Psyllid ID: psy17342

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-
Protein Sequence
MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFITSG
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEccccccccccEEEEEEccccccEEEEEcccccccccccccEEEEEEccccccccEEEEEccccEEEEEEEcccccEEEEEEccccEEEEEccccccccEEEcccccccccccEEEEEEEEEccccEEEEEEccccEEEEEcccccccEEEEEcccccccccEEEEEEEEEccccccEEEEEccccEEEEEEcccccccccEEEEcccccEEEEEEcccccccccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEccccccEEEEEEcccEEEEEEcccccEEEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccEccHHHHHHHHHHHcHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHcccccccccEEEEEccccccccEEEEEEccccccccccccEEEEEEcccccccccEEEcccccEEEEEcccccccEEEEEEcccEEEEEEccccccccEEEcccccccccccEEEEEEEEcccccEEEEEEcccEEEEEEEcccccccccEEccccccccccccEEEEEcccccccEEEEEccccEEEEEccccccccEEEEEccccccEEEEEEcccccccccccEEEEEcccEEEEEEEccccccEEEEEccccEEEEEEEcccccEEEEEEccccEEEEEEccccccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEccccccHHHHHcccc
Coil and Loop (DISEMBL)
mdwaeagesqisgtlhglqadwneegdpglpqlpqdlqfdmtgdeksstkLSFCRQFFdekwsknrnvtymdwstqhPELLLASYhrnkeapnepdgvcliwntkfkkttpefeffcqspvlsccfakfnpylilggtysgQIVLWdtrvqkktpvhrtplsvmahthpvfcmsvigtqnahnlisisndgrlcswslemlsspqetrdlqynnkqtkNLAVLSLafpqndvnnfvvgcedgnvysacrhgnkagnvecyeghegpvvglsshraqghidfshlyltssYDWSVKLWnikenkpvhsfnefRDYVMdvqwspinpalFATVEVAGRVdlwnlnldtevpatsaivegapalsrvtwtpngtqlcvgdekgaiTMFDVGEVGIACLKFITSG
Flexible Loop (DISEMBL)
mdwaeageSQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVegapalsrvtwtpnGTQLCVGDEKGAITMFDVGEVGIACLKFITSG
Low Complexity Region (SEG)
MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNtkfkkttpefeffCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFITSG
Disordered region (IsUnstruct)
**************************************************LSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHR*******PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEML**************QTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFI***
Disordered Region (DISOPRED)
*******ESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTG****STKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKK***********AHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQET********QTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKF****
Disordered Region (DISEMBL)
**********ISGTLHGLQADWNEEGDPGLPQLPQDLQFDM********KLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFITSG
Disordered Region (DISPRO)
*DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFITSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	401	2.2.26 [Sep-21-2011]
Q24246	663	Cytoplasmic dynein 1 inte	no	N/A	0.857	0.518	0.627	1e-137
O88487	612	Cytoplasmic dynein 1 inte	yes	N/A	0.877	0.575	0.622	1e-136
O88485	628	Cytoplasmic dynein 1 inte	no	N/A	0.867	0.554	0.62	1e-135
Q0III3	612	Cytoplasmic dynein 1 inte	yes	N/A	0.877	0.575	0.619	1e-135
Q29RQ3	608	Cytoplasmic dynein 1 inte	no	N/A	0.867	0.572	0.62	1e-135
O14576	645	Cytoplasmic dynein 1 inte	yes	N/A	0.867	0.539	0.62	1e-135
Q63100	643	Cytoplasmic dynein 1 inte	yes	N/A	0.867	0.541	0.62	1e-135
Q5NVM2	638	Cytoplasmic dynein 1 inte	yes	N/A	0.877	0.551	0.619	1e-135
Q13409	638	Cytoplasmic dynein 1 inte	no	N/A	0.877	0.551	0.619	1e-135
Q62871	638	Cytoplasmic dynein 1 inte	no	N/A	0.877	0.551	0.619	1e-134

>sp|Q24246|DYIN_DROME Cytoplasmic dynein 1 intermediate chain OS=Drosophila melanogaster GN=sw PE=1 SV=3

 Score =  488 bits (1256), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 217/346 (62%), Positives = 279/346 (80%), Gaps = 2/346 (0%)

Query: 44  DEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWN 103
           DE+S  +LS  R F+DE+WSKNR +T MDWST  PEL++ SYH N+E+PNEPDGV ++WN
Sbjct: 292 DERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWN 351

Query: 104 TKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSV 163
           TKFKK+TPE  F CQS V+S CFAKFNP LILGGTYSGQIVLWD RVQK+TP+ RTPLS 
Sbjct: 352 TKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSA 411

Query: 164 MAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL 223
            AHTHPV+C+ ++GTQNAHN+ISIS+DG+LCSWSL+MLS PQ+T +LQ   +Q+K +A+ 
Sbjct: 412 AAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQ--QRQSKAIAIT 469

Query: 224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSH 283
           S+AFP N++N+ V+G EDG VYSA RHG ++G  E YE H GP+ G+S+H  Q   DF H
Sbjct: 470 SMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGH 529

Query: 284 LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN 343
           L+LTSS DW++KLW++K+ KP++SF +  DYVMDV WSP++PALFA V+ +GR+DLWNLN
Sbjct: 530 LFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLN 589

Query: 344 LDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389
            DTEVP  S +V GAPAL+RV+WTP+G  +C+GDE G + ++DV E
Sbjct: 590 QDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAE 635

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the help dynein bind to dynactin 150 kDa component.
Drosophila melanogaster (taxid: 7227)

>sp|O88487|DC1I2_MOUSE Cytoplasmic dynein 1 intermediate chain 2 OS=Mus musculus GN=Dync1i2 PE=2 SV=1

 Score =  483 bits (1244), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 221/355 (62%), Positives = 285/355 (80%), Gaps = 3/355 (0%)

Query: 35  QDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNE 94
           +DL+ D  G+ ++  KLS  RQFFDE+WSK+R V+ +DWS+Q+PELL+ASY+ N+EAP+E
Sbjct: 224 RDLE-DKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLVASYNNNEEAPHE 282

Query: 95  PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKT 154
           PDGV L+WN K+KKTTPE+ F CQS V+S  FAKF+P L++GGTYSGQIVLWD R  K+T
Sbjct: 283 PDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKFHPNLVVGGTYSGQIVLWDNRSNKRT 342

Query: 155 PVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNN 214
           PV RTPLS  AHTHPV+C++V+GTQNAHNLISIS DG++CSWSL+MLS PQ++ +L +  
Sbjct: 343 PVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVH-- 400

Query: 215 KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR 274
           KQ+K +AV S++FP  DVNNFVVG E+G+VY+ACRHG+KAG  E +EGH+GP+ G+  H 
Sbjct: 401 KQSKAVAVTSMSFPVGDVNNFVVGSEEGSVYTACRHGSKAGISEMFEGHQGPITGIHCHA 460

Query: 275 AQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVA 334
           A G +DFSHL++TSS+DW+VKLW  K NKP++SF +  DYV DV WSP +PALFA V+  
Sbjct: 461 AVGAVDFSHLFVTSSFDWTVKLWTTKNNKPLYSFEDNSDYVYDVMWSPTHPALFACVDGM 520

Query: 335 GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389
           GR+DLWNLN DTEVP  S  VEG PAL+RV WT +G ++ VGD +G I ++DVGE
Sbjct: 521 GRLDLWNLNNDTEVPTASISVEGNPALNRVRWTHSGREIAVGDSEGQIVIYDVGE 575

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the binding of dynein to dynactin via its 150 kDa component (p150-glued) DCNT1. Involved in membrane-transport, such as Golgi apparatus, late endosomes and lysosomes.

Mus musculus (taxid: 10090)

>sp|O88485|DC1I1_MOUSE Cytoplasmic dynein 1 intermediate chain 1 OS=Mus musculus GN=Dync1i1 PE=1 SV=2

 Score =  483 bits (1243), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 217/350 (62%), Positives = 279/350 (79%), Gaps = 2/350 (0%)

Query: 43  GDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIW 102
           GD ++   LSF RQF+DE WSK+R VT MDWS Q+PEL++ASY  N++AP+EPDGV L+W
Sbjct: 248 GDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMVASYSNNEDAPHEPDGVALVW 307

Query: 103 NTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLS 162
           N KFKKTTPE+ F CQS V+S CFA+F+P L++GGTYSGQIVLWD R  ++TPV RTPLS
Sbjct: 308 NMKFKKTTPEYVFHCQSSVMSVCFARFHPNLVVGGTYSGQIVLWDNRSHRRTPVQRTPLS 367

Query: 163 VMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV 222
             AHTHPV+C++V+GTQNAHNLI++S DG++CSWSL+MLS+PQE+ +L YN  ++K +AV
Sbjct: 368 AAAHTHPVYCVNVVGTQNAHNLITVSTDGKMCSWSLDMLSTPQESMELVYN--KSKPVAV 425

Query: 223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS 282
             +AFP  DVNNFVVG E+G VY+ACRHG+KAG  E +EGH+GPV G++ H A G IDFS
Sbjct: 426 TGMAFPTGDVNNFVVGSEEGTVYTACRHGSKAGIGEVFEGHQGPVTGINCHMAVGPIDFS 485

Query: 283 HLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNL 342
           HL++TSS+DW+VKLW  K NKP++SF +  DYV DV WSP++PALFA V+  GR+DLWNL
Sbjct: 486 HLFVTSSFDWTVKLWTTKHNKPLYSFEDNADYVYDVMWSPVHPALFACVDGMGRLDLWNL 545

Query: 343 NLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGI 392
           N DTEVP  S  +EGA AL+RV W   G ++ VGD +G I ++DVGE+ +
Sbjct: 546 NSDTEVPTASVAIEGASALNRVRWAQGGKEVAVGDSEGRIWIYDVGELAV 595

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the binding of dynein to dynactin via its 150 kDa component (p150-glued) DCNT1. May play a role in mediating the interaction of cytoplasmic dynein with membranous organelles and kinetochores.

Mus musculus (taxid: 10090)

>sp|Q0III3|DC1I2_BOVIN Cytoplasmic dynein 1 intermediate chain 2 OS=Bos taurus GN=DYNC1I2 PE=1 SV=1

 Score =  482 bits (1241), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 220/355 (61%), Positives = 285/355 (80%), Gaps = 3/355 (0%)

Query: 35  QDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNE 94
           +DL+ D  G+ ++  KLS  RQFFDE+WSK+R V+ +DWS+Q+PELL+ASY+ N++AP+E
Sbjct: 224 RDLE-DKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLVASYNNNEDAPHE 282

Query: 95  PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKT 154
           PDGV L+WN K+KKTTPE+ F CQS V+S  FAKF+P L++GGTYSGQIVLWD R  K+T
Sbjct: 283 PDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKFHPNLVVGGTYSGQIVLWDNRSNKRT 342

Query: 155 PVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNN 214
           PV RTPLS  AHTHPV+C++V+GTQNAHNLISIS DG++CSWSL+MLS PQ++ +L +  
Sbjct: 343 PVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVH-- 400

Query: 215 KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR 274
           KQ+K +AV S++FP  DVNNFVVG E+G+VY+ACRHG+KAG  E +EGH+GP+ G+  H 
Sbjct: 401 KQSKAVAVTSMSFPVGDVNNFVVGSEEGSVYTACRHGSKAGISEMFEGHQGPITGIHCHS 460

Query: 275 AQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVA 334
           A G +DFSHL++TSS+DW+VKLW  K NKP++SF +  DYV DV WSP +PALFA V+  
Sbjct: 461 AVGAVDFSHLFVTSSFDWTVKLWTTKNNKPLYSFEDNSDYVYDVMWSPTHPALFACVDGM 520

Query: 335 GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389
           GR+DLWNLN DTEVP  S  VEG PAL+RV WT +G ++ VGD +G I ++DVGE
Sbjct: 521 GRLDLWNLNNDTEVPTASISVEGNPALNRVRWTHSGREIAVGDSEGQIVIYDVGE 575

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the binding of dynein to dynactin via its 150 kDa component (p150-glued) DCNT1. Involved in membrane-transport, such as Golgi apparatus, late endosomes and lysosomes.

Bos taurus (taxid: 9913)

>sp|Q29RQ3|DC1I1_BOVIN Cytoplasmic dynein 1 intermediate chain 1 OS=Bos taurus GN=DYNC1I1 PE=1 SV=1

 Score =  482 bits (1241), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 217/350 (62%), Positives = 280/350 (80%), Gaps = 2/350 (0%)

Query: 43  GDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIW 102
           GD ++   LSF RQF+DE WSK+R VT MDWS Q+PEL++ASY+ N++AP+EPDGV L+W
Sbjct: 228 GDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMVASYNNNEDAPHEPDGVALVW 287

Query: 103 NTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLS 162
           N KFKKTTPE+ F CQS V+S CFA+F+P L++GGTYSGQIVLWD R  ++TPV RTPLS
Sbjct: 288 NMKFKKTTPEYVFHCQSSVMSVCFARFHPNLVVGGTYSGQIVLWDNRSHRRTPVQRTPLS 347

Query: 163 VMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV 222
             AHTHPV+C++V+GTQNAHNLI++S DG++CSWSL+MLS+PQE+ +L YN  ++K +AV
Sbjct: 348 AAAHTHPVYCVNVVGTQNAHNLITVSTDGKMCSWSLDMLSTPQESMELVYN--KSKPVAV 405

Query: 223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS 282
             +AFP  DVNNFVVG E+G VY+ACRHG+KAG  E +EGH+GPV G++ H A G IDFS
Sbjct: 406 TGMAFPTGDVNNFVVGSEEGTVYTACRHGSKAGIGEVFEGHQGPVTGINCHMAVGPIDFS 465

Query: 283 HLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNL 342
           HL++TSS+DW+VKLW  K NKP++SF +  DYV DV WSP++PALFA V+  GR+DLWNL
Sbjct: 466 HLFVTSSFDWTVKLWTTKHNKPLYSFEDNADYVYDVMWSPVHPALFACVDGMGRLDLWNL 525

Query: 343 NLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGI 392
           N DTEVP  S  +EGA AL+RV W   G ++ VGD +G I ++DVGE+ +
Sbjct: 526 NNDTEVPTASVAIEGASALNRVRWAQGGKEVAVGDSEGRIWIYDVGELAV 575

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the binding of dynein to dynactin via its 150 kDa component (p150-glued) DCTN1. May play a role in mediating the interaction of cytoplasmic dynein with membranous organelles and kinetochores.

Bos taurus (taxid: 9913)

>sp|O14576|DC1I1_HUMAN Cytoplasmic dynein 1 intermediate chain 1 OS=Homo sapiens GN=DYNC1I1 PE=1 SV=2

 Score =  482 bits (1240), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 217/350 (62%), Positives = 280/350 (80%), Gaps = 2/350 (0%)

Query: 43  GDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIW 102
           GD ++   LSF RQF+DE WSK+R VT MDWS Q+PEL++ASY+ N++AP+EPDGV L+W
Sbjct: 265 GDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMVASYNNNEDAPHEPDGVALVW 324

Query: 103 NTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLS 162
           N KFKKTTPE+ F CQS V+S CFA+F+P L++GGTYSGQIVLWD R  ++TPV RTPLS
Sbjct: 325 NMKFKKTTPEYVFHCQSSVMSVCFARFHPNLVVGGTYSGQIVLWDNRSHRRTPVQRTPLS 384

Query: 163 VMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV 222
             AHTHPV+C++V+GTQNAHNLI++S DG++CSWSL+MLS+PQE+ +L YN  ++K +AV
Sbjct: 385 AAAHTHPVYCVNVVGTQNAHNLITVSTDGKMCSWSLDMLSTPQESMELVYN--KSKPVAV 442

Query: 223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS 282
             +AFP  DVNNFVVG E+G VY+ACRHG+KAG  E +EGH+GPV G++ H A G IDFS
Sbjct: 443 TGMAFPTGDVNNFVVGSEEGTVYTACRHGSKAGIGEVFEGHQGPVTGINCHMAVGPIDFS 502

Query: 283 HLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNL 342
           HL++TSS+DW+VKLW  K NKP++SF +  DYV DV WSP++PALFA V+  GR+DLWNL
Sbjct: 503 HLFVTSSFDWTVKLWTTKHNKPLYSFEDNADYVYDVMWSPVHPALFACVDGMGRLDLWNL 562

Query: 343 NLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGI 392
           N DTEVP  S  +EGA AL+RV W   G ++ VGD +G I ++DVGE+ +
Sbjct: 563 NNDTEVPTASVAIEGASALNRVRWAQAGKEVAVGDSEGRIWVYDVGELAV 612

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the binding of dynein to dynactin via its 150 kDa component (p150-glued) DCNT1. May play a role in mediating the interaction of cytoplasmic dynein with membranous organelles and kinetochores.

Homo sapiens (taxid: 9606)

>sp|Q63100|DC1I1_RAT Cytoplasmic dynein 1 intermediate chain 1 OS=Rattus norvegicus GN=Dync1i1 PE=1 SV=1

 Score =  481 bits (1237), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 217/350 (62%), Positives = 279/350 (79%), Gaps = 2/350 (0%)

Query: 43  GDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIW 102
           GD ++   LSF RQF+DE WSK+R VT MDWS Q+PEL++ASY  N++AP+EPDGV L+W
Sbjct: 263 GDVQAGANLSFNRQFYDEHWSKHRVVTCMDWSLQYPELMVASYSNNEDAPHEPDGVALVW 322

Query: 103 NTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLS 162
           N KFKKTTPE+ F CQS V+S CFA+F+P L++GGTYSGQIVLWD R  ++TPV RTPLS
Sbjct: 323 NMKFKKTTPEYVFHCQSSVMSVCFARFHPNLVVGGTYSGQIVLWDNRSHRRTPVQRTPLS 382

Query: 163 VMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV 222
             AHTHPV+C++V+GTQNAHNLI++S DG++CSWSL+MLS+PQE+ +L YN  ++K +AV
Sbjct: 383 AAAHTHPVYCVNVVGTQNAHNLITVSTDGKMCSWSLDMLSTPQESMELVYN--KSKPVAV 440

Query: 223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS 282
             +AFP  DVNNFVVG E+G VY+ACRHG+KAG  E +EGH+GPV G++ H A G IDFS
Sbjct: 441 TGMAFPTGDVNNFVVGSEEGTVYTACRHGSKAGIGEVFEGHQGPVTGINCHMAVGPIDFS 500

Query: 283 HLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNL 342
           HL++TSS+DW+VKLW  K NKP++SF +  DYV DV WSP++PALFA V+  GR+DLWNL
Sbjct: 501 HLFVTSSFDWTVKLWTTKHNKPLYSFEDNADYVYDVMWSPVHPALFACVDGMGRLDLWNL 560

Query: 343 NLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGI 392
           N DTEVP  S  +EGA AL+RV W   G ++ VGD +G I ++DVGE+ +
Sbjct: 561 NSDTEVPTASVAIEGAYALNRVRWAQGGKEVAVGDSEGRIWIYDVGELAV 610

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the binding of dynein to dynactin via its 150 kDa component (p150-glued) DCNT1. May play a role in mediating the interaction of cytoplasmic dynein with membranous organelles and kinetochores.

Rattus norvegicus (taxid: 10116)

>sp|Q5NVM2|DC1I2_PONAB Cytoplasmic dynein 1 intermediate chain 2 OS=Pongo abelii GN=DYNC1I2 PE=2 SV=1

 Score =  480 bits (1236), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 220/355 (61%), Positives = 285/355 (80%), Gaps = 3/355 (0%)

Query: 35  QDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNE 94
           +DL+ D  G+ ++  KLS  RQFFDE+WSK+R V+ +DWS+Q+PELL+ASY+ N++AP+E
Sbjct: 250 RDLE-DKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLVASYNNNEDAPHE 308

Query: 95  PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKT 154
           PDGV L+WN K+KKTTPE+ F CQS V+S  FAKF+P L++GGTYSGQIVLWD R  K+T
Sbjct: 309 PDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKFHPNLVVGGTYSGQIVLWDNRSNKRT 368

Query: 155 PVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNN 214
           PV RTPLS  AHTHPV+C++V+GTQNAHNLISIS DG++CSWSL+MLS PQ++ +L +  
Sbjct: 369 PVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVH-- 426

Query: 215 KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR 274
           KQ+K +AV S++FP  DVNNFVVG E+G+VY+ACRHG+KAG  E +EGH+GP+ G+  H 
Sbjct: 427 KQSKAVAVTSMSFPVGDVNNFVVGSEEGSVYTACRHGSKAGISEMFEGHQGPITGIHCHA 486

Query: 275 AQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVA 334
           A G +DFSHL++TSS+DW+VKLW  K NKP++SF +  DYV DV WSP +PALFA V+  
Sbjct: 487 AVGAVDFSHLFVTSSFDWTVKLWTTKNNKPLYSFEDNADYVYDVMWSPTHPALFACVDGM 546

Query: 335 GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389
           GR+DLWNLN DTEVP  S  VEG PAL+RV WT +G ++ VGD +G I ++DVGE
Sbjct: 547 GRLDLWNLNNDTEVPTASISVEGNPALNRVRWTHSGREIAVGDSEGQIVIYDVGE 601

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and help dynein bind to dynactin 150 kDa component (By similarity). organelles along microtubules. The intermediate chains mediate the binding of dynein to dynactin via its 150 kDa component (p150-glued) DCNT1. Involved in membrane-transport, such as Golgi apparatus, late endosomes and lysosomes.

Pongo abelii (taxid: 9601)

>sp|Q13409|DC1I2_HUMAN Cytoplasmic dynein 1 intermediate chain 2 OS=Homo sapiens GN=DYNC1I2 PE=1 SV=3

 Score =  480 bits (1236), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 220/355 (61%), Positives = 285/355 (80%), Gaps = 3/355 (0%)

Query: 35  QDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNE 94
           +DL+ D  G+ ++  KLS  RQFFDE+WSK+R V+ +DWS+Q+PELL+ASY+ N++AP+E
Sbjct: 250 RDLE-DKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLVASYNNNEDAPHE 308

Query: 95  PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKT 154
           PDGV L+WN K+KKTTPE+ F CQS V+S  FAKF+P L++GGTYSGQIVLWD R  K+T
Sbjct: 309 PDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKFHPNLVVGGTYSGQIVLWDNRSNKRT 368

Query: 155 PVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNN 214
           PV RTPLS  AHTHPV+C++V+GTQNAHNLISIS DG++CSWSL+MLS PQ++ +L +  
Sbjct: 369 PVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVH-- 426

Query: 215 KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR 274
           KQ+K +AV S++FP  DVNNFVVG E+G+VY+ACRHG+KAG  E +EGH+GP+ G+  H 
Sbjct: 427 KQSKAVAVTSMSFPVGDVNNFVVGSEEGSVYTACRHGSKAGISEMFEGHQGPITGIHCHA 486

Query: 275 AQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVA 334
           A G +DFSHL++TSS+DW+VKLW  K NKP++SF +  DYV DV WSP +PALFA V+  
Sbjct: 487 AVGAVDFSHLFVTSSFDWTVKLWTTKNNKPLYSFEDNADYVYDVMWSPTHPALFACVDGM 546

Query: 335 GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389
           GR+DLWNLN DTEVP  S  VEG PAL+RV WT +G ++ VGD +G I ++DVGE
Sbjct: 547 GRLDLWNLNNDTEVPTASISVEGNPALNRVRWTHSGREIAVGDSEGQIVIYDVGE 601

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the binding of dynein to dynactin via its 150 kDa component (p150-glued) DCNT1. Involved in membrane-transport, such as Golgi apparatus, late endosomes and lysosomes.

Homo sapiens (taxid: 9606)

>sp|Q62871|DC1I2_RAT Cytoplasmic dynein 1 intermediate chain 2 OS=Rattus norvegicus GN=Dync1i2 PE=1 SV=1

 Score =  478 bits (1231), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 220/355 (61%), Positives = 285/355 (80%), Gaps = 3/355 (0%)

Query: 35  QDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNE 94
           +DL+ D  G+ ++  KLS  RQFFDE+WSK+R V+ +DWS+Q+PELL+ASY+ N+EAP+E
Sbjct: 250 RDLE-DKEGEIQAGAKLSLNRQFFDERWSKHRVVSCLDWSSQYPELLVASYNNNEEAPHE 308

Query: 95  PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKT 154
           PDGV L+WN K+KKTTPE+ F CQS V+S  FAKF+P L++GGTYSGQIVLWD R  K+T
Sbjct: 309 PDGVALVWNMKYKKTTPEYVFHCQSAVMSATFAKFHPNLVVGGTYSGQIVLWDNRSNKRT 368

Query: 155 PVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNN 214
           PV RTPLS  AHTHPV+C++V+GTQNAHNLISIS DG++CSWSL+MLS PQ++ +L +  
Sbjct: 369 PVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVH-- 426

Query: 215 KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR 274
           KQ+K +AV S++FP  DVNNFVVG E+G+VY+ACRHG+KAG  E +EGH+GP+ G+  H 
Sbjct: 427 KQSKAVAVTSMSFPVGDVNNFVVGSEEGSVYTACRHGSKAGISEMFEGHQGPITGIHCHA 486

Query: 275 AQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVA 334
           A G +DFSHL++TSS+DW+VKLW+ K NKP++SF +  DYV DV  SP +PALFA V+  
Sbjct: 487 AVGAVDFSHLFVTSSFDWTVKLWSTKNNKPLYSFEDNSDYVYDVIGSPTHPALFACVDGM 546

Query: 335 GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389
           GR+DLWNLN DTEVP  S  VEG PAL+RV WT +G ++ VGD +G I ++DVGE
Sbjct: 547 GRLDLWNLNNDTEVPTASISVEGNPALNRVRWTHSGREIAVGDSEGQIVIYDVGE 601

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. The intermediate chains mediate the binding of dynein to dynactin via its 150 kDa component (p150-glued) DCNT1. Involved in membrane-transport, such as Golgi apparatus, late endosomes and lysosomes.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	401
322795652	681	hypothetical protein SINV_03066 [Solenop	0.857	0.505	0.667	1e-139
345490296	654	PREDICTED: cytoplasmic dynein 1 intermed	0.877	0.538	0.640	1e-139
307212596	682	Dynein intermediate chain, cytosolic [Ha	0.877	0.516	0.649	1e-139
345490298	681	PREDICTED: cytoplasmic dynein 1 intermed	0.877	0.516	0.640	1e-138
307189065	600	Dynein intermediate chain, cytosolic [Ca	0.877	0.586	0.649	1e-138
332028731	643	Dynein intermediate chain, cytosolic [Ac	0.857	0.534	0.667	1e-138
345490300	708	PREDICTED: cytoplasmic dynein 1 intermed	0.877	0.497	0.640	1e-138
340722861	707	PREDICTED: cytoplasmic dynein 1 intermed	0.857	0.486	0.656	1e-137
328783012	707	PREDICTED: cytoplasmic dynein 1 intermed	0.857	0.486	0.658	1e-137
350418771	707	PREDICTED: cytoplasmic dynein 1 intermed	0.857	0.486	0.656	1e-137

>gi|322795652|gb|EFZ18331.1| hypothetical protein SINV_03066 [Solenopsis invicta]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 231/346 (66%), Positives = 278/346 (80%), Gaps = 2/346 (0%)

Query: 44  DEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWN 103
           DEKS  +L   R F  E+WS+NR VT MDWS Q PELL ASY+ N + PN+PDGVCLIWN
Sbjct: 285 DEKSHQRLWLNRSFICERWSRNRCVTSMDWSPQFPELLAASYNNNDDTPNDPDGVCLIWN 344

Query: 104 TKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSV 163
           TKFKKTTPEF F CQSPV+S  FA+F+P LILGGTYSGQIVLWD RVQK+TP+ RTPLS 
Sbjct: 345 TKFKKTTPEFIFHCQSPVMSTTFARFHPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSA 404

Query: 164 MAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL 223
            AHTHPV+C+SV+GTQNAHNLISIS DG+LCSWSL+MLS PQE   L+ + KQ+K +A  
Sbjct: 405 TAHTHPVYCLSVVGTQNAHNLISISTDGKLCSWSLDMLSQPQEA--LELHTKQSKAIAAT 462

Query: 224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSH 283
            LAFP  DVNNFV+G EDG VYSACRHG++AG  E YEGH+GPV G+S+H  QG IDFSH
Sbjct: 463 CLAFPHGDVNNFVMGSEDGTVYSACRHGSRAGLTETYEGHQGPVTGISAHAVQGGIDFSH 522

Query: 284 LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN 343
           L+LTSS DW++KLW++KENKP++SF    DYV DV WSP +PALFA+V+ +GR+DLWNLN
Sbjct: 523 LFLTSSLDWTIKLWSLKENKPLYSFEHNGDYVYDVAWSPTHPALFASVDDSGRLDLWNLN 582

Query: 344 LDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389
            DTEVP  S +V+G PAL+RV+WTP+G  + VGD+ G I ++DV E
Sbjct: 583 QDTEVPTASVVVDGCPALNRVSWTPSGLHVTVGDDTGKIWVYDVAE 628

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345490296|ref|XP_003426346.1| PREDICTED: cytoplasmic dynein 1 intermediate chain isoform 2 [Nasonia vitripennis]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 232/362 (64%), Positives = 282/362 (77%), Gaps = 10/362 (2%)

Query: 36  DLQFDMTG--------DEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHR 87
           D+  D TG        D+KS   L   R FFDE+WS+NR VT MDWS Q PELL A+Y+ 
Sbjct: 242 DIYTDYTGTMDGEDGMDDKSHQCLWLNRFFFDERWSRNRCVTAMDWSPQFPELLAAAYNN 301

Query: 88  NKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWD 147
           N + PN+PDGVCL+WNTKFKKTTPEF F CQSPV+S  FA+F+P LILGGTYSGQ+VLWD
Sbjct: 302 NDDTPNDPDGVCLVWNTKFKKTTPEFIFHCQSPVMSTTFARFHPNLILGGTYSGQVVLWD 361

Query: 148 TRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQET 207
            RVQK+TP+ RTPLS  AHTHPV+C+ V+GTQNAHNLISIS DG++CSWSL+MLS PQET
Sbjct: 362 NRVQKRTPIQRTPLSAAAHTHPVYCLKVVGTQNAHNLISISTDGKMCSWSLDMLSQPQET 421

Query: 208 RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPV 267
            +LQ  NKQ+K +AV  LAFP  DVNNFVVG EDG VYSACRHG +AG  E YEGH+GP+
Sbjct: 422 LELQ--NKQSKQIAVTQLAFPSGDVNNFVVGSEDGTVYSACRHGTRAGVTETYEGHQGPI 479

Query: 268 VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPAL 327
            G+ +H   G IDFSHL+L+SS DW++KLW++KENKP++SF    DYV DV WSP +PA+
Sbjct: 480 TGVDTHAVPGGIDFSHLFLSSSLDWTIKLWSLKENKPLYSFEHNSDYVYDVAWSPSHPAV 539

Query: 328 FATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
           FA V+ +GR+DLWNLN DTEVP  S IV+G PAL+RV+WTP+G  + VGD+ G I ++DV
Sbjct: 540 FAAVDDSGRLDLWNLNQDTEVPTASVIVDGCPALNRVSWTPSGLHVTVGDDSGKIWVYDV 599

Query: 388 GE 389
            E
Sbjct: 600 AE 601

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212596|gb|EFN88311.1| Dynein intermediate chain, cytosolic [Harpegnathos saltator]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 235/362 (64%), Positives = 282/362 (77%), Gaps = 10/362 (2%)

Query: 36  DLQFDMTG--------DEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHR 87
           D+  D TG        DEKS  +L   R F  E+WS+NR VT MDWS Q PELL ASY+ 
Sbjct: 270 DIYTDYTGTMDGEDGMDEKSHQRLWLNRSFICERWSRNRCVTSMDWSPQFPELLAASYNN 329

Query: 88  NKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWD 147
           N + PN+PDGVCLIWNTKFKKTTPEF F CQSPV+S  FA+F+P LILGGTYSGQIVLWD
Sbjct: 330 NDDTPNDPDGVCLIWNTKFKKTTPEFIFHCQSPVMSTTFARFHPNLILGGTYSGQIVLWD 389

Query: 148 TRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQET 207
            RVQK+TP+ RTPLS  AHTHPV+C+SV+GTQNAHNLISIS DG+LCSWSL+MLS PQE 
Sbjct: 390 NRVQKRTPIQRTPLSASAHTHPVYCLSVVGTQNAHNLISISTDGKLCSWSLDMLSQPQEA 449

Query: 208 RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPV 267
             L+ + KQ+K +A   LAFP  DVNNFV+G EDG VYSACRHG++AG  E YEGH+GPV
Sbjct: 450 --LELHTKQSKAIAATCLAFPHGDVNNFVMGSEDGTVYSACRHGSRAGLTETYEGHQGPV 507

Query: 268 VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPAL 327
            G+S+H  QG IDFSHL+LTSS DW++KLW++KENKP++SF    DYV DV WSP +PAL
Sbjct: 508 TGISAHAVQGGIDFSHLFLTSSLDWTIKLWSLKENKPLYSFEHNGDYVYDVAWSPTHPAL 567

Query: 328 FATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
           FA V+ +GR+DLWNLN DTEVP  S +V+G PAL+RV+WTP+G  + VGD+ G I ++DV
Sbjct: 568 FAAVDDSGRLDLWNLNQDTEVPTASVVVDGCPALNRVSWTPSGLHVTVGDDTGKIWVYDV 627

Query: 388 GE 389
            E
Sbjct: 628 AE 629

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345490298|ref|XP_003426347.1| PREDICTED: cytoplasmic dynein 1 intermediate chain isoform 3 [Nasonia vitripennis]

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 232/362 (64%), Positives = 282/362 (77%), Gaps = 10/362 (2%)

Query: 36  DLQFDMTG--------DEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHR 87
           D+  D TG        D+KS   L   R FFDE+WS+NR VT MDWS Q PELL A+Y+ 
Sbjct: 269 DIYTDYTGTMDGEDGMDDKSHQCLWLNRFFFDERWSRNRCVTAMDWSPQFPELLAAAYNN 328

Query: 88  NKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWD 147
           N + PN+PDGVCL+WNTKFKKTTPEF F CQSPV+S  FA+F+P LILGGTYSGQ+VLWD
Sbjct: 329 NDDTPNDPDGVCLVWNTKFKKTTPEFIFHCQSPVMSTTFARFHPNLILGGTYSGQVVLWD 388

Query: 148 TRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQET 207
            RVQK+TP+ RTPLS  AHTHPV+C+ V+GTQNAHNLISIS DG++CSWSL+MLS PQET
Sbjct: 389 NRVQKRTPIQRTPLSAAAHTHPVYCLKVVGTQNAHNLISISTDGKMCSWSLDMLSQPQET 448

Query: 208 RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPV 267
            +LQ  NKQ+K +AV  LAFP  DVNNFVVG EDG VYSACRHG +AG  E YEGH+GP+
Sbjct: 449 LELQ--NKQSKQIAVTQLAFPSGDVNNFVVGSEDGTVYSACRHGTRAGVTETYEGHQGPI 506

Query: 268 VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPAL 327
            G+ +H   G IDFSHL+L+SS DW++KLW++KENKP++SF    DYV DV WSP +PA+
Sbjct: 507 TGVDTHAVPGGIDFSHLFLSSSLDWTIKLWSLKENKPLYSFEHNSDYVYDVAWSPSHPAV 566

Query: 328 FATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
           FA V+ +GR+DLWNLN DTEVP  S IV+G PAL+RV+WTP+G  + VGD+ G I ++DV
Sbjct: 567 FAAVDDSGRLDLWNLNQDTEVPTASVIVDGCPALNRVSWTPSGLHVTVGDDSGKIWVYDV 626

Query: 388 GE 389
            E
Sbjct: 627 AE 628

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189065|gb|EFN73552.1| Dynein intermediate chain, cytosolic [Camponotus floridanus]

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 235/362 (64%), Positives = 282/362 (77%), Gaps = 10/362 (2%)

Query: 36  DLQFDMTG--------DEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHR 87
           D+  D TG        DEKS  +L   R F  E+WS+NR VT MDWS Q PELL ASY+ 
Sbjct: 188 DIYTDYTGTMDGEDGMDEKSHQRLWLNRSFICERWSRNRCVTSMDWSPQFPELLAASYNN 247

Query: 88  NKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWD 147
           N + PN+PDGVCLIWNTKFKKTTPEF F CQSPV+S  FA+F+P LILGGTYSGQIVLWD
Sbjct: 248 NDDTPNDPDGVCLIWNTKFKKTTPEFIFHCQSPVMSTTFARFHPNLILGGTYSGQIVLWD 307

Query: 148 TRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQET 207
            RVQK+TP+ RTPLS  AHTHPV+C+SV+GTQNAHNLISIS DG+LCSWSL+MLS PQE 
Sbjct: 308 NRVQKRTPIQRTPLSATAHTHPVYCLSVVGTQNAHNLISISTDGKLCSWSLDMLSQPQEA 367

Query: 208 RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPV 267
             L+ + KQ+K +A   LAFP  DVNNFV+G EDG VYSACRHG++AG  E YEGH+GPV
Sbjct: 368 --LELHTKQSKAIAATCLAFPHGDVNNFVMGSEDGTVYSACRHGSRAGLTETYEGHQGPV 425

Query: 268 VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPAL 327
            G+S+H  QG IDFSHL+LTSS DW++KLW++KENKP++SF    DYV DV WSP +PAL
Sbjct: 426 TGISAHAVQGGIDFSHLFLTSSLDWTIKLWSLKENKPLYSFEHNGDYVYDVAWSPTHPAL 485

Query: 328 FATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
           FA V+ +GR+DLWNLN DTEVP  S +V+G PAL+RV+WTP+G  + VGD+ G I ++DV
Sbjct: 486 FAAVDDSGRLDLWNLNQDTEVPTASVVVDGCPALNRVSWTPSGLHVTVGDDTGKIWVYDV 545

Query: 388 GE 389
            E
Sbjct: 546 AE 547

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028731|gb|EGI68762.1| Dynein intermediate chain, cytosolic [Acromyrmex echinatior]

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 231/346 (66%), Positives = 277/346 (80%), Gaps = 2/346 (0%)

Query: 44  DEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWN 103
           DEKS  +L   R F  E+WS+NR VT MDWS Q PELL ASY+ N + PN+PDGVCLIWN
Sbjct: 247 DEKSHQRLWLNRSFICERWSRNRCVTSMDWSPQFPELLAASYNNNDDTPNDPDGVCLIWN 306

Query: 104 TKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSV 163
           TKFKKTTPEF F CQSPV+S  FA+F+P LILGGTYSGQIVLWD RVQK+TP+ RTPLS 
Sbjct: 307 TKFKKTTPEFIFHCQSPVMSTTFARFHPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSA 366

Query: 164 MAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL 223
            AHTHPV+C++V+GTQNAHNLISIS DG+LCSWSL+MLS PQE   L+ + KQ+K +A  
Sbjct: 367 TAHTHPVYCLNVVGTQNAHNLISISTDGKLCSWSLDMLSQPQEA--LELHTKQSKAIAAT 424

Query: 224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSH 283
            LAFP  DVNNFV+G EDG VYSACRHG++AG  E YEGH+GPV G+S+H  QG IDFSH
Sbjct: 425 CLAFPHGDVNNFVMGSEDGTVYSACRHGSRAGLTETYEGHQGPVTGISAHAVQGGIDFSH 484

Query: 284 LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN 343
           L+LTSS DW++KLW++KENKP++SF    DYV DV WSP +PALFA V+ +GR+DLWNLN
Sbjct: 485 LFLTSSLDWTIKLWSLKENKPLYSFEHNGDYVYDVAWSPTHPALFAAVDDSGRLDLWNLN 544

Query: 344 LDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389
            DTEVP  S IV+G PAL+RV+WTP+G  + VGD+ G I ++DV E
Sbjct: 545 QDTEVPTASVIVDGCPALNRVSWTPSGLHVTVGDDTGKIWVYDVAE 590

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345490300|ref|XP_001606556.2| PREDICTED: cytoplasmic dynein 1 intermediate chain isoform 1 [Nasonia vitripennis]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 232/362 (64%), Positives = 282/362 (77%), Gaps = 10/362 (2%)

Query: 36  DLQFDMTG--------DEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHR 87
           D+  D TG        D+KS   L   R FFDE+WS+NR VT MDWS Q PELL A+Y+ 
Sbjct: 296 DIYTDYTGTMDGEDGMDDKSHQCLWLNRFFFDERWSRNRCVTAMDWSPQFPELLAAAYNN 355

Query: 88  NKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWD 147
           N + PN+PDGVCL+WNTKFKKTTPEF F CQSPV+S  FA+F+P LILGGTYSGQ+VLWD
Sbjct: 356 NDDTPNDPDGVCLVWNTKFKKTTPEFIFHCQSPVMSTTFARFHPNLILGGTYSGQVVLWD 415

Query: 148 TRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQET 207
            RVQK+TP+ RTPLS  AHTHPV+C+ V+GTQNAHNLISIS DG++CSWSL+MLS PQET
Sbjct: 416 NRVQKRTPIQRTPLSAAAHTHPVYCLKVVGTQNAHNLISISTDGKMCSWSLDMLSQPQET 475

Query: 208 RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPV 267
            +LQ  NKQ+K +AV  LAFP  DVNNFVVG EDG VYSACRHG +AG  E YEGH+GP+
Sbjct: 476 LELQ--NKQSKQIAVTQLAFPSGDVNNFVVGSEDGTVYSACRHGTRAGVTETYEGHQGPI 533

Query: 268 VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPAL 327
            G+ +H   G IDFSHL+L+SS DW++KLW++KENKP++SF    DYV DV WSP +PA+
Sbjct: 534 TGVDTHAVPGGIDFSHLFLSSSLDWTIKLWSLKENKPLYSFEHNSDYVYDVAWSPSHPAV 593

Query: 328 FATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
           FA V+ +GR+DLWNLN DTEVP  S IV+G PAL+RV+WTP+G  + VGD+ G I ++DV
Sbjct: 594 FAAVDDSGRLDLWNLNQDTEVPTASVIVDGCPALNRVSWTPSGLHVTVGDDSGKIWVYDV 653

Query: 388 GE 389
            E
Sbjct: 654 AE 655

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722861|ref|XP_003399819.1| PREDICTED: cytoplasmic dynein 1 intermediate chain-like [Bombus terrestris]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 227/346 (65%), Positives = 278/346 (80%), Gaps = 2/346 (0%)

Query: 44  DEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWN 103
           DEKS  +L   R FF ++WS+NR VT MDWS Q PELL ASY+ N + PN+PDGVCL+WN
Sbjct: 311 DEKSHQRLWLNRWFFCDRWSRNRCVTSMDWSPQFPELLAASYNNNDDTPNDPDGVCLVWN 370

Query: 104 TKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSV 163
           TKFKKTTPEF F CQSPV+S  FA+F+P LILGGTYSGQIVLWD RVQK+TP+ RTPLS 
Sbjct: 371 TKFKKTTPEFIFHCQSPVMSTTFARFHPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSA 430

Query: 164 MAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL 223
            AHTHPV+C++V+G QNAHNLISIS DG+LCSWSL+MLS PQET  L+ + KQ+K +A  
Sbjct: 431 SAHTHPVYCLNVVGAQNAHNLISISTDGKLCSWSLDMLSQPQET--LELHTKQSKAIAAT 488

Query: 224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSH 283
            LAFP  DVNNFVVG E+G VYSACRHG KAG ++ YEGH+GPV G+S+H  QG IDFSH
Sbjct: 489 CLAFPHGDVNNFVVGSEEGTVYSACRHGTKAGVLDSYEGHQGPVTGISTHAVQGGIDFSH 548

Query: 284 LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN 343
           L+LTSS DW++KLW++KE+KP++SF    DYV DV WSP +PALFA V+ +GR+DLWNLN
Sbjct: 549 LFLTSSIDWTIKLWSLKESKPLYSFEHNGDYVYDVAWSPTHPALFAAVDDSGRLDLWNLN 608

Query: 344 LDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389
            DTEVP  S ++ G+PAL+RV+WTP+G  + VGD+ G I ++DV E
Sbjct: 609 QDTEVPTASIVINGSPALNRVSWTPSGLHVTVGDDTGKIWVYDVAE 654

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783012|ref|XP_396853.3| PREDICTED: cytoplasmic dynein 1 intermediate chain [Apis mellifera] gi|380012072|ref|XP_003690113.1| PREDICTED: cytoplasmic dynein 1 intermediate chain-like [Apis florea]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 228/346 (65%), Positives = 277/346 (80%), Gaps = 2/346 (0%)

Query: 44  DEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWN 103
           DEK+  +L   R FF ++WS+NR VT MDWS Q PELL ASY+ N + PN+PDGVCL+WN
Sbjct: 311 DEKNHQRLWLNRWFFCDRWSRNRCVTSMDWSPQFPELLAASYNNNDDTPNDPDGVCLVWN 370

Query: 104 TKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSV 163
           TKFKKTTPEF F CQSPV+S  FA+F+P LILGGTYSGQIVLWD RVQK+TP+ RTPLS 
Sbjct: 371 TKFKKTTPEFIFHCQSPVMSTTFARFHPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSA 430

Query: 164 MAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL 223
            AHTHPV+C++V+G QNAHNLISIS DG+LCSWSL+MLS PQET DL  + KQ+K +A  
Sbjct: 431 SAHTHPVYCLNVVGAQNAHNLISISTDGKLCSWSLDMLSQPQETLDL--HTKQSKAIAAT 488

Query: 224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSH 283
            LAFP  DVNNFVVG E+G VYSACRHG KAG +E YEGH+GPV G+S+H  QG IDFSH
Sbjct: 489 CLAFPHGDVNNFVVGSEEGTVYSACRHGTKAGVLETYEGHQGPVTGISAHAVQGGIDFSH 548

Query: 284 LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN 343
           L+LTSS DW++KLW++KE+KP++SF    DYV DV WSP +PALFA V+ +GR+DLWNLN
Sbjct: 549 LFLTSSIDWTIKLWSLKESKPLYSFEHNGDYVYDVAWSPTHPALFAAVDDSGRLDLWNLN 608

Query: 344 LDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389
            DTEVP  S ++ G PAL+RV+WTP+G  + VGD+ G I ++DV E
Sbjct: 609 QDTEVPTASIVINGCPALNRVSWTPSGLHVTVGDDSGKIWVYDVAE 654

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418771|ref|XP_003491961.1| PREDICTED: cytoplasmic dynein 1 intermediate chain-like [Bombus impatiens]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 227/346 (65%), Positives = 278/346 (80%), Gaps = 2/346 (0%)

Query: 44  DEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWN 103
           DEKS  +L   R FF ++WS+NR VT MDWS Q PELL ASY+ N + PN+PDGVCL+WN
Sbjct: 311 DEKSHQRLWLNRWFFCDRWSRNRCVTSMDWSPQFPELLAASYNNNDDTPNDPDGVCLVWN 370

Query: 104 TKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSV 163
           TKFKKTTPEF F CQSPV+S  FA+F+P LILGGTYSGQIVLWD RVQK+TP+ RTPLS 
Sbjct: 371 TKFKKTTPEFIFHCQSPVMSTTFARFHPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSA 430

Query: 164 MAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL 223
            AHTHPV+C++V+G QNAHNLISIS DG+LCSWSL+MLS PQET  L+ + KQ+K +A  
Sbjct: 431 SAHTHPVYCLNVVGAQNAHNLISISTDGKLCSWSLDMLSQPQET--LELHTKQSKAIAAT 488

Query: 224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSH 283
            LAFP  DVNNFVVG E+G VYSACRHG KAG ++ YEGH+GPV G+S+H  QG IDFSH
Sbjct: 489 CLAFPHGDVNNFVVGSEEGTVYSACRHGTKAGVLDSYEGHQGPVTGISTHAVQGGIDFSH 548

Query: 284 LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN 343
           L+LTSS DW++KLW++KE+KP++SF    DYV DV WSP +PALFA V+ +GR+DLWNLN
Sbjct: 549 LFLTSSIDWTIKLWSLKESKPLYSFEHNGDYVYDVAWSPTHPALFAAVDDSGRLDLWNLN 608

Query: 344 LDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389
            DTEVP  S ++ G+PAL+RV+WTP+G  + VGD+ G I ++DV E
Sbjct: 609 QDTEVPTASIVINGSPALNRVSWTPSGLHVTVGDDTGKIWVYDVAE 654

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	401
UNIPROTKB|F1PSE8	628	DYNC1I1 "Uncharacterized prote	0.937	0.598	0.559	1.3e-122
UNIPROTKB|O14576	645	DYNC1I1 "Cytoplasmic dynein 1	0.937	0.582	0.559	1.3e-122
MGI|MGI:107743	628	Dync1i1 "dynein cytoplasmic 1	0.937	0.598	0.559	2.2e-122
UNIPROTKB|F1SF88	552	LOC100523985 "Uncharacterized	0.937	0.681	0.556	4.5e-122
FB|FBgn0003654	663	sw "short wing" [Drosophila me	0.857	0.518	0.601	9.5e-121
FB|FBgn0053497	543	Sdic2 "Sperm-specific dynein i	0.857	0.633	0.601	1.2e-120
FB|FBgn0053499	543	Sdic4 "Sperm-specific dynein i	0.857	0.633	0.601	1.2e-120
UNIPROTKB|E1C7N2	617	DYNC1I1 "Uncharacterized prote	0.937	0.609	0.559	2e-120
UNIPROTKB|Q29RQ3	608	DYNC1I1 "Cytoplasmic dynein 1	0.937	0.618	0.559	2e-120
UNIPROTKB|F5H050	602	DYNC1I1 "Cytoplasmic dynein 1	0.942	0.627	0.562	2e-120

UNIPROTKB|F1PSE8 DYNC1I1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1183 (421.5 bits), Expect = 1.3e-122, Sum P(2) = 1.3e-122
 Identities = 212/379 (55%), Positives = 282/379 (74%)

Query:    14 TLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDW 73
             T+  ++    E+ D       ++L+ +  GD ++   LSF RQF+DE WSK+R VT MDW
Sbjct:   220 TIRVIERALAEDSDIFFDYSGRELE-EKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDW 278

Query:    74 STQHPELLLASYHRNKEAPNEPDGVCLIWNXXXXXXXXXXXXXCQSPVLSCCFAKFNPYL 133
             S Q+PEL++ASY+ N++AP+EPDGV L+WN             CQS V+S CFA+F+P L
Sbjct:   279 SLQYPELMVASYNNNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARFHPNL 338

Query:   134 ILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRL 193
             ++GGTYSGQIVLWD R  ++TPV RTPLS  AHTHPV+C++V+GTQNAHNLI++S DG++
Sbjct:   339 VVGGTYSGQIVLWDNRSHRRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLITVSTDGKM 398

Query:   194 CSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK 253
             CSWSL+MLS+PQE+ +L YN  ++K +AV  +AFP  DVNNFVVG E+G VY+ACRHG+K
Sbjct:   399 CSWSLDMLSTPQESMELVYN--KSKPVAVTGMAFPTGDVNNFVVGSEEGTVYTACRHGSK 456

Query:   254 AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRD 313
             AG  E +EGH+GPV G++ H A G IDFSHL++TSS+DW+VKLW  K NKP++SF +  D
Sbjct:   457 AGIGEVFEGHQGPVTGINCHMAVGPIDFSHLFVTSSFDWTVKLWTTKHNKPLYSFEDNAD 516

Query:   314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQL 373
             YV DV WSP++PALFA V+  GR+DLWNLN DTEVP  S  +EGA AL+RV W   G ++
Sbjct:   517 YVYDVMWSPVHPALFACVDGMGRLDLWNLNNDTEVPTASVAIEGASALNRVRWAQAGKEV 576

Query:   374 CVGDEKGAITMFDVGEVGI 392
              VGD +G I ++DVGE+ +
Sbjct:   577 AVGDSEGRIWIYDVGELAV 595

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005868 "cytoplasmic dynein complex" evidence=IEA

UNIPROTKB|O14576 DYNC1I1 "Cytoplasmic dynein 1 intermediate chain 1" [Homo sapiens (taxid:9606)]

 Score = 1183 (421.5 bits), Expect = 1.3e-122, Sum P(2) = 1.3e-122
 Identities = 212/379 (55%), Positives = 282/379 (74%)

Query:    14 TLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDW 73
             T+  ++    E+ D       ++L+ +  GD ++   LSF RQF+DE WSK+R VT MDW
Sbjct:   237 TIRVIERALAEDSDIFFDYSGRELE-EKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDW 295

Query:    74 STQHPELLLASYHRNKEAPNEPDGVCLIWNXXXXXXXXXXXXXCQSPVLSCCFAKFNPYL 133
             S Q+PEL++ASY+ N++AP+EPDGV L+WN             CQS V+S CFA+F+P L
Sbjct:   296 SLQYPELMVASYNNNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARFHPNL 355

Query:   134 ILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRL 193
             ++GGTYSGQIVLWD R  ++TPV RTPLS  AHTHPV+C++V+GTQNAHNLI++S DG++
Sbjct:   356 VVGGTYSGQIVLWDNRSHRRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLITVSTDGKM 415

Query:   194 CSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK 253
             CSWSL+MLS+PQE+ +L YN  ++K +AV  +AFP  DVNNFVVG E+G VY+ACRHG+K
Sbjct:   416 CSWSLDMLSTPQESMELVYN--KSKPVAVTGMAFPTGDVNNFVVGSEEGTVYTACRHGSK 473

Query:   254 AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRD 313
             AG  E +EGH+GPV G++ H A G IDFSHL++TSS+DW+VKLW  K NKP++SF +  D
Sbjct:   474 AGIGEVFEGHQGPVTGINCHMAVGPIDFSHLFVTSSFDWTVKLWTTKHNKPLYSFEDNAD 533

Query:   314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQL 373
             YV DV WSP++PALFA V+  GR+DLWNLN DTEVP  S  +EGA AL+RV W   G ++
Sbjct:   534 YVYDVMWSPVHPALFACVDGMGRLDLWNLNNDTEVPTASVAIEGASALNRVRWAQAGKEV 593

Query:   374 CVGDEKGAITMFDVGEVGI 392
              VGD +G I ++DVGE+ +
Sbjct:   594 AVGDSEGRIWVYDVGELAV 612

GO:0005874 "microtubule" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0000922 "spindle pole" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0031982 "vesicle" evidence=IDA

GO:0003774 "motor activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0008017 "microtubule binding" evidence=ISS

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0047496 "vesicle transport along microtubule" evidence=ISS

MGI|MGI:107743 Dync1i1 "dynein cytoplasmic 1 intermediate chain 1" [Mus musculus (taxid:10090)]

 Score = 1184 (421.8 bits), Expect = 2.2e-122, Sum P(2) = 2.2e-122
 Identities = 212/379 (55%), Positives = 281/379 (74%)

Query:    14 TLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDW 73
             T+  ++    E+ D       ++L+ +  GD ++   LSF RQF+DE WSK+R VT MDW
Sbjct:   220 TIRVIERALAEDSDIFFDYSGRELE-EKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDW 278

Query:    74 STQHPELLLASYHRNKEAPNEPDGVCLIWNXXXXXXXXXXXXXCQSPVLSCCFAKFNPYL 133
             S Q+PEL++ASY  N++AP+EPDGV L+WN             CQS V+S CFA+F+P L
Sbjct:   279 SLQYPELMVASYSNNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARFHPNL 338

Query:   134 ILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRL 193
             ++GGTYSGQIVLWD R  ++TPV RTPLS  AHTHPV+C++V+GTQNAHNLI++S DG++
Sbjct:   339 VVGGTYSGQIVLWDNRSHRRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLITVSTDGKM 398

Query:   194 CSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK 253
             CSWSL+MLS+PQE+ +L YN  ++K +AV  +AFP  DVNNFVVG E+G VY+ACRHG+K
Sbjct:   399 CSWSLDMLSTPQESMELVYN--KSKPVAVTGMAFPTGDVNNFVVGSEEGTVYTACRHGSK 456

Query:   254 AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRD 313
             AG  E +EGH+GPV G++ H A G IDFSHL++TSS+DW+VKLW  K NKP++SF +  D
Sbjct:   457 AGIGEVFEGHQGPVTGINCHMAVGPIDFSHLFVTSSFDWTVKLWTTKHNKPLYSFEDNAD 516

Query:   314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQL 373
             YV DV WSP++PALFA V+  GR+DLWNLN DTEVP  S  +EGA AL+RV W   G ++
Sbjct:   517 YVYDVMWSPVHPALFACVDGMGRLDLWNLNSDTEVPTASVAIEGASALNRVRWAQGGKEV 576

Query:   374 CVGDEKGAITMFDVGEVGI 392
              VGD +G I ++DVGE+ +
Sbjct:   577 AVGDSEGRIWIYDVGELAV 595

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000776 "kinetochore" evidence=ISO

GO:0000922 "spindle pole" evidence=ISO

GO:0003774 "motor activity" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005868 "cytoplasmic dynein complex" evidence=ISO

GO:0005874 "microtubule" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0008017 "microtubule binding" evidence=ISO

GO:0030286 "dynein complex" evidence=TAS

GO:0031982 "vesicle" evidence=ISO

GO:0047496 "vesicle transport along microtubule" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

UNIPROTKB|F1SF88 LOC100523985 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1178 (419.7 bits), Expect = 4.5e-122, Sum P(2) = 4.5e-122
 Identities = 211/379 (55%), Positives = 281/379 (74%)

Query:    14 TLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDW 73
             T+  ++    E+ D       ++L+ +  GD ++   LSF RQF+DE WSK+R VT MDW
Sbjct:   144 TIRVIERALAEDSDIFFDYSGRELE-EKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDW 202

Query:    74 STQHPELLLASYHRNKEAPNEPDGVCLIWNXXXXXXXXXXXXXCQSPVLSCCFAKFNPYL 133
             S Q+PEL++ASY+ N++AP+EPDGV L+WN             CQS V+S CFA+F+P L
Sbjct:   203 SLQYPELMVASYNNNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARFHPNL 262

Query:   134 ILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRL 193
             ++GGTYSGQIVLWD R  ++TPV RTPLS  AHTHPV+C++V+GTQNAHNLI++S DG++
Sbjct:   263 VVGGTYSGQIVLWDNRSHRRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLITVSTDGKM 322

Query:   194 CSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK 253
             CSWSL+MLS+PQE+ +L YN  ++K +AV  +AFP  DVNNFVVG E+G VY+ACRHG+K
Sbjct:   323 CSWSLDMLSTPQESMELVYN--KSKPVAVTGMAFPTGDVNNFVVGSEEGTVYTACRHGSK 380

Query:   254 AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRD 313
             AG  E +EGH+GPV G++ H A G IDFSHL++TSS+DW+VKLW  K NKP++SF +  D
Sbjct:   381 AGIGEVFEGHQGPVTGINCHMAVGPIDFSHLFVTSSFDWTVKLWTTKHNKPLYSFEDNAD 440

Query:   314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQL 373
             YV DV WSP++PALFA V+  GR+DLWNLN DTEVP  S  +EGA AL+ V W   G ++
Sbjct:   441 YVYDVMWSPVHPALFACVDGMGRLDLWNLNNDTEVPTASVAIEGASALNHVRWAQAGKEV 500

Query:   374 CVGDEKGAITMFDVGEVGI 392
              VGD +G I ++DVGE+ +
Sbjct:   501 AVGDSEGRIWIYDVGELAV 519

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005868 "cytoplasmic dynein complex" evidence=IEA

FB|FBgn0003654 sw "short wing" [Drosophila melanogaster (taxid:7227)]

 Score = 1188 (423.3 bits), Expect = 9.5e-121, P = 9.5e-121
 Identities = 208/346 (60%), Positives = 269/346 (77%)

Query:    44 DEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWN 103
             DE+S  +LS  R F+DE+WSKNR +T MDWST  PEL++ SYH N+E+PNEPDGV ++WN
Sbjct:   292 DERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWN 351

Query:   104 XXXXXXXXXXXXXCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSV 163
                          CQS V+S CFAKFNP LILGGTYSGQIVLWD RVQK+TP+ RTPLS 
Sbjct:   352 TKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSA 411

Query:   164 MAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL 223
              AHTHPV+C+ ++GTQNAHN+ISIS+DG+LCSWSL+MLS PQ+T +LQ   +Q+K +A+ 
Sbjct:   412 AAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQ--QRQSKAIAIT 469

Query:   224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSH 283
             S+AFP N++N+ V+G EDG VYSA RHG ++G  E YE H GP+ G+S+H  Q   DF H
Sbjct:   470 SMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGH 529

Query:   284 LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN 343
             L+LTSS DW++KLW++K+ KP++SF +  DYVMDV WSP++PALFA V+ +GR+DLWNLN
Sbjct:   530 LFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLN 589

Query:   344 LDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389
              DTEVP  S +V GAPAL+RV+WTP+G  +C+GDE G + ++DV E
Sbjct:   590 QDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAE 635

GO:0005868 "cytoplasmic dynein complex" evidence=IEA;NAS

GO:0003777 "microtubule motor activity" evidence=NAS

GO:0001754 "eye photoreceptor cell differentiation" evidence=IGI

GO:0016482 "cytoplasmic transport" evidence=IMP

GO:0034501 "protein localization to kinetochore" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

GO:0007051 "spindle organization" evidence=IMP

GO:0051642 "centrosome localization" evidence=IMP

GO:0045503 "dynein light chain binding" evidence=IPI

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

GO:0008088 "axon cargo transport" evidence=IMP

FB|FBgn0053497 Sdic2 "Sperm-specific dynein intermediate chain 2" [Drosophila melanogaster (taxid:7227)]

 Score = 1187 (422.9 bits), Expect = 1.2e-120, P = 1.2e-120
 Identities = 208/346 (60%), Positives = 269/346 (77%)

Query:    44 DEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWN 103
             DE+S  +LS  R F+DE+WSKNR +T MDWST  PEL++ SYH N+E+PNEPDGV ++WN
Sbjct:   172 DERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWN 231

Query:   104 XXXXXXXXXXXXXCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSV 163
                          CQS V+S CFAKFNP LILGGTYSGQIVLWD RVQK+TP+ RTPLS 
Sbjct:   232 TKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSA 291

Query:   164 MAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL 223
              AHTHPV+C+ ++GTQNAHN+ISIS+DG+LCSWSL+MLS PQ+T +LQ   +Q+K +A+ 
Sbjct:   292 AAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQ--QRQSKAIAIT 349

Query:   224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSH 283
             S+AFP N++N+ V+G EDG VYSA RHG ++G  E YE H GP+ G+S+H  Q   DF H
Sbjct:   350 SMAFPANEINSVVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGH 409

Query:   284 LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN 343
             L+LTSS DW++KLW++K+ KP++SF +  DYVMDV WSP++PALFA V+ +GR+DLWNLN
Sbjct:   410 LFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLN 469

Query:   344 LDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389
              DTEVP  S +V GAPAL+RV+WTP+G  +C+GDE G + ++DV E
Sbjct:   470 QDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAE 515

GO:0005868 "cytoplasmic dynein complex" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=ISS

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

FB|FBgn0053499 Sdic4 "Sperm-specific dynein intermediate chain 4" [Drosophila melanogaster (taxid:7227)]

 Score = 1187 (422.9 bits), Expect = 1.2e-120, P = 1.2e-120
 Identities = 208/346 (60%), Positives = 269/346 (77%)

Query:    44 DEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWN 103
             DE+S  +LS  R F+DE+WSKNR +T MDWST  PEL++ SYH N+E+PNEPDGV ++WN
Sbjct:   172 DERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWN 231

Query:   104 XXXXXXXXXXXXXCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSV 163
                          CQS V+S CFAKFNP LILGGTYSGQIVLWD RVQK+TP+ RTPLS 
Sbjct:   232 TKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSA 291

Query:   164 MAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL 223
              AHTHPV+C+ ++GTQNAHN+ISIS+DG+LCSWSL+MLS PQ+T +LQ   +Q+K +A+ 
Sbjct:   292 AAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQ--QRQSKAIAIT 349

Query:   224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSH 283
             S+AFP N++N+ V+G EDG VYSA RHG ++G  E YE H GP+ G+S+H  Q   DF H
Sbjct:   350 SMAFPANEINSVVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGH 409

Query:   284 LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN 343
             L+LTSS DW++KLW++K+ KP++SF +  DYVMDV WSP++PALFA V+ +GR+DLWNLN
Sbjct:   410 LFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFAAVDGSGRLDLWNLN 469

Query:   344 LDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE 389
              DTEVP  S +V GAPAL+RV+WTP+G  +C+GDE G + ++DV E
Sbjct:   470 QDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAE 515

GO:0005868 "cytoplasmic dynein complex" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=ISS

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

UNIPROTKB|E1C7N2 DYNC1I1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1185 (422.2 bits), Expect = 2.0e-120, P = 2.0e-120
 Identities = 212/379 (55%), Positives = 282/379 (74%)

Query:    14 TLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDW 73
             T+  ++    E+ D       +D++ +  GD ++   LSF RQF+DE WSK+R VT MDW
Sbjct:   209 TIRVIERALAEDSDIFFDYSGRDVE-EKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDW 267

Query:    74 STQHPELLLASYHRNKEAPNEPDGVCLIWNXXXXXXXXXXXXXCQSPVLSCCFAKFNPYL 133
             S Q+PEL++ASY+ N++AP+EPDGV L+WN             CQS V+S CFA+F+P L
Sbjct:   268 SLQYPELMVASYNNNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARFHPNL 327

Query:   134 ILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRL 193
             ++GGTYSGQIVLWD R  ++TPV RTPLS  AHTHPV+C++V+GTQNAHNLI++S DG++
Sbjct:   328 VVGGTYSGQIVLWDNRSHRRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLITVSTDGKM 387

Query:   194 CSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK 253
             CSWSL+MLS+PQE+ +L YN  ++K +AV  +AFP  DVNNFVVG E+G VY+ACRHG+K
Sbjct:   388 CSWSLDMLSTPQESMELVYN--KSKPVAVTGMAFPTGDVNNFVVGSEEGTVYTACRHGSK 445

Query:   254 AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRD 313
             AG  E +EGH+GPV G++ H A G IDFSHL++TSS+DW+VKLW  K NKP++SF +  D
Sbjct:   446 AGIGEIFEGHQGPVTGINCHMAVGSIDFSHLFVTSSFDWTVKLWTTKHNKPLYSFEDNAD 505

Query:   314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQL 373
             YV DV WSP++PALFA V+  GR+DLWNLN DTEVP  S  +EGA AL+RV W   G ++
Sbjct:   506 YVYDVMWSPVHPALFACVDGMGRLDLWNLNNDTEVPTASVTIEGASALNRVRWAQAGKEV 565

Query:   374 CVGDEKGAITMFDVGEVGI 392
              VGD +G I ++DVGE+ +
Sbjct:   566 AVGDSEGRIWIYDVGELAV 584

GO:0005868 "cytoplasmic dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0031982 "vesicle" evidence=IEA

UNIPROTKB|Q29RQ3 DYNC1I1 "Cytoplasmic dynein 1 intermediate chain 1" [Bos taurus (taxid:9913)]

 Score = 1185 (422.2 bits), Expect = 2.0e-120, P = 2.0e-120
 Identities = 212/379 (55%), Positives = 282/379 (74%)

Query:    14 TLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDW 73
             T+  ++    E+ D       ++L+ +  GD ++   LSF RQF+DE WSK+R VT MDW
Sbjct:   200 TIRVIERALAEDSDIFFDYSGRELE-EKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDW 258

Query:    74 STQHPELLLASYHRNKEAPNEPDGVCLIWNXXXXXXXXXXXXXCQSPVLSCCFAKFNPYL 133
             S Q+PEL++ASY+ N++AP+EPDGV L+WN             CQS V+S CFA+F+P L
Sbjct:   259 SLQYPELMVASYNNNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARFHPNL 318

Query:   134 ILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRL 193
             ++GGTYSGQIVLWD R  ++TPV RTPLS  AHTHPV+C++V+GTQNAHNLI++S DG++
Sbjct:   319 VVGGTYSGQIVLWDNRSHRRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLITVSTDGKM 378

Query:   194 CSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK 253
             CSWSL+MLS+PQE+ +L YN  ++K +AV  +AFP  DVNNFVVG E+G VY+ACRHG+K
Sbjct:   379 CSWSLDMLSTPQESMELVYN--KSKPVAVTGMAFPTGDVNNFVVGSEEGTVYTACRHGSK 436

Query:   254 AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRD 313
             AG  E +EGH+GPV G++ H A G IDFSHL++TSS+DW+VKLW  K NKP++SF +  D
Sbjct:   437 AGIGEVFEGHQGPVTGINCHMAVGPIDFSHLFVTSSFDWTVKLWTTKHNKPLYSFEDNAD 496

Query:   314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQL 373
             YV DV WSP++PALFA V+  GR+DLWNLN DTEVP  S  +EGA AL+RV W   G ++
Sbjct:   497 YVYDVMWSPVHPALFACVDGMGRLDLWNLNNDTEVPTASVAIEGASALNRVRWAQGGKEV 556

Query:   374 CVGDEKGAITMFDVGEVGI 392
              VGD +G I ++DVGE+ +
Sbjct:   557 AVGDSEGRIWIYDVGELAV 575

GO:0031982 "vesicle" evidence=ISS

GO:0005868 "cytoplasmic dynein complex" evidence=IDA

GO:0000922 "spindle pole" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

UNIPROTKB|F5H050 DYNC1I1 "Cytoplasmic dynein 1 intermediate chain 1" [Homo sapiens (taxid:9606)]

 Score = 1185 (422.2 bits), Expect = 2.0e-120, P = 2.0e-120
 Identities = 215/382 (56%), Positives = 284/382 (74%)

Query:    14 TLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDW 73
             T+  ++    E+ D       ++L+ +  GD ++   LSF RQF+DE WSK+R VT MDW
Sbjct:   200 TIRVIERALAEDSDIFFDYSGRELE-EKDGDVQAGANLSFNRQFYDEHWSKHRVVTCMDW 258

Query:    74 STQHPELLLASYHRNKEAPNEPDGVCLIWNXXXXXXXXXXXXXCQSPVLSCCFAKFNPYL 133
             S Q+PEL++ASY+ N++AP+EPDGV L+WN             CQS V+S CFA+F+P L
Sbjct:   259 SLQYPELMVASYNNNEDAPHEPDGVALVWNMKFKKTTPEYVFHCQSSVMSVCFARFHPNL 318

Query:   134 ILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRL 193
             ++GGTYSGQIVLWD R  ++TPV RTPLS  AHTHPV+C++V+GTQNAHNLI++S DG++
Sbjct:   319 VVGGTYSGQIVLWDNRSHRRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLITVSTDGKM 378

Query:   194 CSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK 253
             CSWSL+MLS+PQE+ +L YN  ++K +AV  +AFP  DVNNFVVG E+G VY+ACRHG+K
Sbjct:   379 CSWSLDMLSTPQESMELVYN--KSKPVAVTGMAFPTGDVNNFVVGSEEGTVYTACRHGSK 436

Query:   254 AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRD 313
             AG  E +EGH+GPV G++ H A G IDFSHL++TSS+DW+VKLW  K NKP++SF +  D
Sbjct:   437 AGIGEVFEGHQGPVTGINCHMAVGPIDFSHLFVTSSFDWTVKLWTTKHNKPLYSFEDNAD 496

Query:   314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQL 373
             YV DV WSP++PALFA V+  GR+DLWNLN DTEVP  S  +EGA AL+RV W   G ++
Sbjct:   497 YVYDVMWSPVHPALFACVDGMGRLDLWNLNNDTEVPTASVAIEGASALNRVRWAQAGKEV 556

Query:   374 CVGDEKGAITMFDVGEVGIACL 395
              VGD +G I ++DVGE G+A L
Sbjct:   557 AVGDSEGRIWVYDVGE-GLAML 577

GO:0005868 "cytoplasmic dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O88487	DC1I2_MOUSE	No assigned EC number	0.6225	0.8778	0.5751	yes	N/A
Q0III3	DC1I2_BOVIN	No assigned EC number	0.6197	0.8778	0.5751	yes	N/A
Q63100	DC1I1_RAT	No assigned EC number	0.62	0.8678	0.5412	yes	N/A
Q5NVM2	DC1I2_PONAB	No assigned EC number	0.6197	0.8778	0.5517	yes	N/A
O14576	DC1I1_HUMAN	No assigned EC number	0.62	0.8678	0.5395	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	401
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-08

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 76.3 bits (186), Expect = 5e-15
 Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 17/223 (7%)

Query: 166 HTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL 225
           H   +  ++         L+S S+DG +  W L+          L  + +   + +V  L
Sbjct: 64  HEDSITSIAFSPDG--ELLLSGSSDGTIKLWDLD------NGEKLIKSLEGLHDSSVSKL 115

Query: 226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGN-VECYEGHEGPVVGLSSHRAQGHIDFSHL 284
           A    D N+ ++     +        +  G  +   EGH   V  L+        D   L
Sbjct: 116 ALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP-----DGKLL 170

Query: 285 YLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL 344
              SS D ++KLW+++  KP+ +     D V  + +SP    L A+    G + LW+L+ 
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230

Query: 345 DTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
              + +T   + G       +++P+G+ L  G   G I ++D+
Sbjct: 231 GKLLRST---LSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDL 270

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 57/270 (21%), Positives = 97/270 (35%), Gaps = 32/270 (11%)

Query: 119 SPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGT 178
             V    F+     L  G    G I +WD    +         ++  HT PV    V  +
Sbjct: 10  GGVTCVAFSPDGKLLATGS-GDGTIKVWDLETGEL------LRTLKGHTGPVRD--VAAS 60

Query: 179 QNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVG 238
            +   L S S+D  +  W LE   + +  R L  +        V S+AF  +     +  
Sbjct: 61  ADGTYLASGSSDKTIRLWDLE---TGECVRTLTGHTS-----YVSSVAF--SPDGRILSS 110

Query: 239 C-EDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLW 297
              D  +            +    GH   V  ++               +SS D ++KLW
Sbjct: 111 SSRDKTI--KVWDVETGKCLTTLRGHTDWVNSVAFSP------DGTFVASSSQDGTIKLW 162

Query: 298 NIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG 357
           +++  K V +       V  V +SP    L ++    G + LW+L+    +   +     
Sbjct: 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKCL--GTLRGHE 219

Query: 358 APALSRVTWTPNGTQLCVGDEKGAITMFDV 387
               S V ++P+G  L  G E G I ++D+
Sbjct: 220 NGVNS-VAFSPDGYLLASGSEDGTIRVWDL 248

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 70.1 bits (170), Expect = 5e-13
 Identities = 57/294 (19%), Positives = 106/294 (36%), Gaps = 29/294 (9%)

Query: 96  DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTP 155
           DG   +W+                 V S  F+     L  G +  G I LWD R  K   
Sbjct: 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL- 191

Query: 156 VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNK 215
                 ++  HT PV  ++         + S S+DG +  W L   +       L  ++ 
Sbjct: 192 -----STLAGHTDPVSSLAFSPDGGLL-IASGSSDGTIRLWDLS--TGKLLRSTLSGHSD 243

Query: 216 QTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRA 275
              +      +F  +  +    G  DG +       + +  +    GH   V+ ++    
Sbjct: 244 SVVS------SFSPDG-SLLASGSSDGTIR-LWDLRSSSSLLRTLSGHSSSVLSVAFSPD 295

Query: 276 QGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEF--RDYVMDVQWSPINPALFATVEV 333
                   L  + S D +V+LW+++  K + S         V  + +SP    L +    
Sbjct: 296 ------GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349

Query: 334 AGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
            G + LW+L     +      +EG   +  V+++P+G  +  G   G + ++D+
Sbjct: 350 DGTIRLWDLRTGKPL----KTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDL 399

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 66.7 bits (161), Expect = 5e-12
 Identities = 49/251 (19%), Positives = 83/251 (33%), Gaps = 31/251 (12%)

Query: 96  DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTP 155
           DG   +W+    K          S  +   F+     L  G    G I LWD R      
Sbjct: 220 DGTIRLWDLSTGKLLRS-TLSGHSDSVVSSFSPDGSLLASGS-SDGTIRLWDLRSSSSLL 277

Query: 156 VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNK 215
                 ++  H+  V  ++     +   L S S+DG +  W LE            +   
Sbjct: 278 R-----TLSGHSSSVLSVAFSP--DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG- 329

Query: 216 QTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRA 275
                 V SL+F  +       G +DG +        K            P+  L  H  
Sbjct: 330 -----PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK------------PLKTLEGHSN 372

Query: 276 QGHIDFS---HLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVE 332
              + FS    +  + S D +V+LW++     + + +     V  + +SP   +L +   
Sbjct: 373 VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS 432

Query: 333 VAGRVDLWNLN 343
               + LW+L 
Sbjct: 433 D-NTIRLWDLK 442

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 58.9 bits (143), Expect = 9e-10
 Identities = 51/278 (18%), Positives = 96/278 (34%), Gaps = 46/278 (16%)

Query: 68  VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFA 127
           V  +  S     L   S           D    +W+ +  +          S V S  F+
Sbjct: 54  VRDVAASADGTYLASGSS----------DKTIRLWDLETGECVRTLTGH-TSYVSSVAFS 102

Query: 128 KFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISI 187
             +  ++   +    I +WD      T    T L    HT  V  ++         + S 
Sbjct: 103 P-DGRILSSSSRDKTIKVWDVE----TGKCLTTLR--GHTDWVNSVAFSPDGTF--VASS 153

Query: 188 SNDG--RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGN-- 243
           S DG  +L  W L    + +    L  +  +     V S+AF   D    +    DG   
Sbjct: 154 SQDGTIKL--WDLR---TGKCVATLTGHTGE-----VNSVAF-SPDGEKLLSSSSDGTIK 202

Query: 244 VYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK 303
           ++      +    +    GHE  V  ++           +L  + S D ++++W+++  +
Sbjct: 203 LWDL----STGKCLGTLRGHENGVNSVAFSPD------GYLLASGSEDGTIRVWDLRTGE 252

Query: 304 PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
            V + +   + V  + WSP    L A+    G + +W+
Sbjct: 253 CVQTLSGHTNSVTSLAWSPDGKRL-ASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 56.3 bits (134), Expect = 1e-08
 Identities = 56/284 (19%), Positives = 103/284 (36%), Gaps = 23/284 (8%)

Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG 177
           +  + S  F+     L+ G    G I LWD    +K            H   V  +++  
Sbjct: 65  EDSITSIAFSPDGELLLSGS-SDGTIKLWDLDNGEKLIKSLE----GLHDSSVSKLALSS 119

Query: 178 TQNAHNLISISN-DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFV 236
                 L++ S+ DG +  W L        T        +  + +V SLAF  +      
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRT-------LEGHSESVTSLAFSPDGKLLAS 172

Query: 237 VGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKL 296
               DG +        K   +    GH  PV  L+        D   L  + S D +++L
Sbjct: 173 GSSLDGTIKLWDLRTGK--PLSTLAGHTDPVSSLAFS-----PDGGLLIASGSSDGTIRL 225

Query: 297 WNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVE 356
           W++   K + S        +   +SP + +L A+    G + LW+L   + +  T +   
Sbjct: 226 WDLSTGKLLRSTLSGHSDSVVSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS 284

Query: 357 GAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFITS 400
            +  +  V ++P+G  L  G   G + ++D+    +     +  
Sbjct: 285 SS--VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG 326

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	401
KOG0271|consensus	480		100.0
KOG0271|consensus	480		100.0
KOG0272|consensus	459		100.0
KOG0286|consensus	343		100.0
KOG0272|consensus	459		100.0
KOG0273|consensus	524		100.0
KOG0279|consensus	315		100.0
KOG0284|consensus	464		100.0
KOG0315|consensus	311		100.0
KOG0273|consensus	524		100.0
KOG0315|consensus	311		100.0
KOG0319|consensus	775		100.0
KOG0318|consensus	603		100.0
KOG0645|consensus	312		100.0
KOG0295|consensus	406		100.0
KOG0286|consensus	343		100.0
KOG0276|consensus	794		100.0
KOG0263|consensus	707		100.0
KOG0291|consensus	893		100.0
KOG0279|consensus	315		100.0
KOG0319|consensus	775		100.0
KOG0265|consensus	338		100.0
KOG0263|consensus	707		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0285|consensus	460		100.0
KOG0281|consensus	499		100.0
KOG0291|consensus	893		100.0
KOG0277|consensus	311		100.0
KOG0284|consensus	464		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0306|consensus	888		100.0
KOG0266|consensus	456		100.0
KOG0295|consensus	406		100.0
KOG0285|consensus	460		100.0
KOG0292|consensus	1202		100.0
KOG0293|consensus	519		100.0
KOG0293|consensus	519		100.0
KOG0296|consensus	399		100.0
KOG0313|consensus	423		100.0
KOG0645|consensus	312		100.0
KOG0318|consensus	603		100.0
KOG0282|consensus	503		100.0
KOG0313|consensus	423		100.0
KOG1407|consensus	313		100.0
KOG0292|consensus	1202		100.0
KOG0265|consensus	338		100.0
KOG0305|consensus	484		100.0
KOG0281|consensus	499		100.0
KOG0264|consensus	422		100.0
KOG0647|consensus	347		100.0
KOG0316|consensus	307		100.0
KOG0277|consensus	311		100.0
KOG0316|consensus	307		100.0
KOG0278|consensus	334		100.0
KOG0282|consensus	503		100.0
KOG0264|consensus	422		100.0
KOG0266|consensus	456		100.0
KOG0310|consensus	487		100.0
KOG0276|consensus	794		100.0
KOG0306|consensus	888		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0275|consensus	508		100.0
KOG1587|consensus	555		100.0
KOG0640|consensus	430		100.0
KOG1036|consensus	323		100.0
KOG0772|consensus	641		100.0
KOG0275|consensus	508		100.0
KOG0641|consensus	350		100.0
KOG0643|consensus	327		100.0
KOG0283|consensus	712		100.0
KOG1446|consensus	311		100.0
KOG0299|consensus	479		100.0
KOG0296|consensus	399		100.0
KOG0274|consensus	537		100.0
KOG0288|consensus	459		100.0
KOG0268|consensus	433		100.0
KOG1408|consensus	1080		100.0
KOG1332|consensus	299		100.0
KOG1539|consensus	910		99.98
KOG0300|consensus	481		99.98
PTZ00421	493	coronin; Provisional	99.98
KOG0301|consensus	745		99.98
KOG1063|consensus	764		99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0305|consensus	484		99.97
KOG1332|consensus	299		99.97
KOG0278|consensus	334		99.97
KOG0973|consensus	942		99.97
KOG0289|consensus	506		99.97
KOG0274|consensus	537		99.97
KOG0269|consensus	839		99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0772|consensus	641		99.97
KOG0310|consensus	487		99.97
KOG2096|consensus	420		99.97
KOG0973|consensus	942		99.97
KOG0647|consensus	347		99.97
KOG1407|consensus	313		99.97
KOG0308|consensus	735		99.97
KOG0308|consensus	735		99.97
KOG2106|consensus	626		99.97
KOG0641|consensus	350		99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0289|consensus	506		99.97
KOG2055|consensus	514		99.97
KOG1036|consensus	323		99.96
KOG0646|consensus	476		99.96
KOG0643|consensus	327		99.96
KOG0640|consensus	430		99.96
KOG0294|consensus	362		99.96
KOG0288|consensus	459		99.96
KOG2445|consensus	361		99.96
KOG0299|consensus	479		99.96
KOG0268|consensus	433		99.96
KOG1446|consensus	311		99.96
KOG0639|consensus	705		99.96
KOG0294|consensus	362		99.96
KOG0307|consensus	1049		99.96
KOG2445|consensus	361		99.96
KOG0269|consensus	839		99.96
KOG0321|consensus	720		99.96
KOG0283|consensus	712		99.96
KOG1408|consensus	1080		99.96
KOG2106|consensus	626		99.96
KOG0646|consensus	476		99.96
KOG0302|consensus	440		99.95
KOG1539|consensus	910		99.95
KOG0270|consensus	463		99.95
KOG0301|consensus	745		99.95
KOG1274|consensus	933		99.95
KOG0270|consensus	463		99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG0650|consensus	733		99.95
KOG2048|consensus	691		99.95
KOG0302|consensus	440		99.95
KOG4328|consensus	498		99.95
KOG2048|consensus	691		99.95
KOG4378|consensus	673		99.95
KOG1274|consensus	933		99.95
KOG0307|consensus	1049		99.95
KOG4283|consensus	397		99.95
KOG1445|consensus	1012		99.95
KOG0300|consensus	481		99.94
KOG4378|consensus	673		99.94
KOG0639|consensus	705		99.94
KOG2919|consensus	406		99.94
KOG1273|consensus	405		99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG1063|consensus	764		99.94
KOG0267|consensus	825		99.94
KOG4328|consensus	498		99.94
KOG4283|consensus	397		99.93
KOG1007|consensus	370		99.93
KOG0321|consensus	720		99.93
KOG1538|consensus	1081		99.93
KOG0290|consensus	364		99.92
KOG0267|consensus	825		99.92
KOG1034|consensus	385		99.92
KOG1007|consensus	370		99.92
KOG0290|consensus	364		99.92
KOG1273|consensus	405		99.92
KOG2096|consensus	420		99.92
KOG2055|consensus	514		99.91
KOG1188|consensus	376		99.91
KOG0650|consensus	733		99.91
KOG1445|consensus	1012		99.9
KOG2919|consensus	406		99.9
KOG4227|consensus	609		99.9
KOG0322|consensus	323		99.9
PRK11028	330	6-phosphogluconolactonase; Provisional	99.89
KOG1517|consensus	1387		99.89
KOG1524|consensus	737		99.88
KOG1009|consensus	434		99.88
KOG1034|consensus	385		99.88
KOG0642|consensus	577		99.87
KOG0642|consensus	577		99.87
KOG0649|consensus	325		99.87
KOG0644|consensus	1113		99.87
PRK11028	330	6-phosphogluconolactonase; Provisional	99.86
KOG1587|consensus	555		99.86
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG0322|consensus	323		99.85
KOG1009|consensus	434		99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG0303|consensus	472		99.84
KOG1963|consensus	792		99.84
KOG0649|consensus	325		99.83
KOG2110|consensus	391		99.83
KOG1188|consensus	376		99.83
KOG1240|consensus	1431		99.82
KOG2110|consensus	391		99.82
KOG1523|consensus	361		99.81
KOG1963|consensus	792		99.81
KOG1523|consensus	361		99.8
KOG1334|consensus	559		99.8
KOG1240|consensus	1431		99.8
KOG0303|consensus	472		99.8
KOG1517|consensus	1387		99.8
KOG1538|consensus	1081		99.79
KOG2111|consensus	346		99.78
KOG2139|consensus	445		99.78
KOG1354|consensus	433		99.78
KOG0644|consensus	1113		99.77
KOG4227|consensus	609		99.77
KOG1272|consensus	545		99.77
KOG2321|consensus	703		99.76
KOG1310|consensus	758		99.76
KOG1310|consensus	758		99.76
KOG4497|consensus	447		99.76
KOG1334|consensus	559		99.75
KOG2394|consensus	636		99.74
KOG1409|consensus	404		99.73
KOG0771|consensus	398		99.73
KOG0771|consensus	398		99.73
KOG2111|consensus	346		99.73
KOG1524|consensus	737		99.72
KOG4497|consensus	447		99.72
KOG0280|consensus	339		99.72
PRK01742	429	tolB translocation protein TolB; Provisional	99.72
KOG2321|consensus	703		99.7
KOG3881|consensus	412		99.7
PRK01742	429	tolB translocation protein TolB; Provisional	99.7
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.68
KOG2139|consensus	445		99.67
KOG2394|consensus	636		99.67
KOG3881|consensus	412		99.67
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.66
KOG1272|consensus	545		99.66
KOG2315|consensus	566		99.62
KOG0974|consensus	967		99.61
PRK03629	429	tolB translocation protein TolB; Provisional	99.61
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.61
KOG1354|consensus	433		99.6
PRK03629	429	tolB translocation protein TolB; Provisional	99.59
PRK04922	433	tolB translocation protein TolB; Provisional	99.58
KOG0280|consensus	339		99.57
PRK05137	435	tolB translocation protein TolB; Provisional	99.57
KOG1409|consensus	404		99.56
KOG0974|consensus	967		99.56
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.54
PRK04922	433	tolB translocation protein TolB; Provisional	99.54
PRK02889	427	tolB translocation protein TolB; Provisional	99.53
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.53
PRK02889	427	tolB translocation protein TolB; Provisional	99.53
PRK05137	435	tolB translocation protein TolB; Provisional	99.52
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.5
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.49
KOG0309|consensus	1081		99.49
KOG4547|consensus	541		99.48
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.46
KOG4547|consensus	541		99.46
KOG1064|consensus	2439		99.43
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.42
KOG4532|consensus	344		99.41
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.39
KOG1064|consensus	2439		99.39
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.38
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.38
KOG2041|consensus	1189		99.38
PRK00178	430	tolB translocation protein TolB; Provisional	99.37
PRK04792	448	tolB translocation protein TolB; Provisional	99.37
PRK01029	428	tolB translocation protein TolB; Provisional	99.37
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.37
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.36
PRK00178	430	tolB translocation protein TolB; Provisional	99.34
KOG2315|consensus	566		99.32
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.32
KOG1912|consensus	1062		99.32
PRK01029	428	tolB translocation protein TolB; Provisional	99.32
PRK04792	448	tolB translocation protein TolB; Provisional	99.31
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.31
COG4946	668	Uncharacterized protein related to the periplasmic	99.3
KOG1912|consensus	1062		99.29
KOG2041|consensus	1189		99.28
KOG2314|consensus	698		99.28
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.27
KOG2314|consensus	698		99.26
KOG4532|consensus	344		99.23
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.22
KOG0309|consensus	1081		99.22
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.21
KOG0882|consensus	558		99.2
KOG4190|consensus	1034		99.19
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.16
KOG3914|consensus	390		99.15
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.14
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.14
KOG3914|consensus	390		99.12
KOG4714|consensus	319		99.11
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.1
KOG2695|consensus	425		99.09
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.06
COG4946	668	Uncharacterized protein related to the periplasmic	99.04
KOG4190|consensus	1034		99.02
KOG1645|consensus	463		98.98
KOG1645|consensus	463		98.96
KOG1275|consensus	1118		98.96
KOG3617|consensus	1416		98.94
KOG4714|consensus	319		98.92
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.87
KOG2066|consensus	846		98.87
KOG2695|consensus	425		98.86
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.85
KOG0882|consensus	558		98.85
PRK04043	419	tolB translocation protein TolB; Provisional	98.84
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.83
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.83
KOG2114|consensus	933		98.82
KOG1832|consensus	1516		98.82
PRK04043	419	tolB translocation protein TolB; Provisional	98.82
KOG1920|consensus	1265		98.75
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.74
KOG2066|consensus	846		98.72
KOG2114|consensus	933		98.69
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.69
KOG1275|consensus	1118		98.68
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.64
KOG3621|consensus	726		98.6
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.59
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.59
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.59
KOG1008|consensus	783		98.58
KOG1920|consensus	1265		98.57
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.55
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.54
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.52
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.51
KOG1832|consensus	1516		98.48
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.47
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.47
KOG1008|consensus	783		98.43
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.41
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.32
PRK02888	635	nitrous-oxide reductase; Validated	98.29
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.26
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.21
KOG4649|consensus	354		98.2
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.15
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.1
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.09
KOG4649|consensus	354		97.98
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.95
KOG4640|consensus	665		97.93
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.93
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.92
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.89
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.87
KOG3617|consensus	1416		97.86
KOG3621|consensus	726		97.84
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.84
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.78
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.74
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.73
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.73
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.7
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.68
KOG2444|consensus	238		97.67
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.67
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.65
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.64
KOG4441|consensus	571		97.6
KOG1897|consensus	1096		97.59
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.58
KOG1897|consensus	1096		97.58
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.56
KOG4441|consensus	571		97.54
PRK02888	635	nitrous-oxide reductase; Validated	97.48
KOG4640|consensus	665		97.48
PHA02713	557	hypothetical protein; Provisional	97.45
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.43
PHA02713	557	hypothetical protein; Provisional	97.35
COG3391	381	Uncharacterized conserved protein [Function unknow	97.29
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.27
KOG2079|consensus	1206		97.26
KOG2395|consensus	644		97.22
COG3391	381	Uncharacterized conserved protein [Function unknow	97.2
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.2
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.16
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.11
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.06
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.04
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.02
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.94
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.94
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.85
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.84
PHA03098	534	kelch-like protein; Provisional	96.8
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.78
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.75
PRK13616	591	lipoprotein LpqB; Provisional	96.59
PRK13616	591	lipoprotein LpqB; Provisional	96.58
PRK10115	686	protease 2; Provisional	96.55
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.54
KOG2079|consensus	1206		96.52
KOG2444|consensus	238		96.5
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.47
KOG2395|consensus	644		96.32
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.32
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.31
KOG4499|consensus	310		96.28
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.28
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.19
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.18
KOG3630|consensus	1405		96.1
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.04
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.9
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.9
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.85
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.82
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.65
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.51
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.5
PHA03098	534	kelch-like protein; Provisional	95.5
KOG3630|consensus	1405		95.47
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.28
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.23
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.22
PHA02790	480	Kelch-like protein; Provisional	95.12
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.08
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.81
PHA02790	480	Kelch-like protein; Provisional	94.74
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.68
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.62
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.61
COG4590	733	ABC-type uncharacterized transport system, permeas	94.35
KOG4460|consensus	741		93.87
COG4590	733	ABC-type uncharacterized transport system, permeas	93.87
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.64
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.55
KOG2247|consensus	615		93.46
KOG1916|consensus	1283		93.46
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	93.39
PLN02193	470	nitrile-specifier protein	93.08
KOG2063|consensus	877		93.07
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	92.9
KOG2377|consensus	657		92.78
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.78
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.45
KOG1983|consensus	993		92.38
KOG1916|consensus	1283		92.34
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.33
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.31
KOG2377|consensus	657		92.27
KOG2280|consensus	829		92.22
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.06
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.75
PRK10115	686	protease 2; Provisional	91.73
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.64
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	91.53
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	91.3
KOG1900|consensus	1311		90.98
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	90.9
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	90.72
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.69
KOG1900|consensus	1311		90.65
PLN02153	341	epithiospecifier protein	90.54
KOG1983|consensus	993		90.36
KOG1898|consensus	1205		90.23
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.83
KOG4499|consensus	310		89.23
KOG2247|consensus	615		88.93
KOG1898|consensus	1205		88.9
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	88.84
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	88.53
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	88.18
COG5276	370	Uncharacterized conserved protein [Function unknow	88.08
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	87.82
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	87.39
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	87.36
PF13449	326	Phytase-like: Esterase-like activity of phytase	87.27
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.21
KOG4460|consensus	741		87.21
COG5167	776	VID27 Protein involved in vacuole import and degra	87.02
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	86.96
KOG2280|consensus	829		86.92
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	86.87
PLN02153	341	epithiospecifier protein	86.67
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	86.41
COG5276	370	Uncharacterized conserved protein [Function unknow	86.19
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	86.11
COG1520	370	FOG: WD40-like repeat [Function unknown]	86.1
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	85.86
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	85.65
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	85.49
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	84.81
PF12768	281	Rax2: Cortical protein marker for cell polarity	84.45
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	84.12
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	83.1
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	82.93
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	82.49
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	82.31
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	81.21
PF12768	281	Rax2: Cortical protein marker for cell polarity	80.01

>KOG0271|consensus

Probab=100.00  E-value=6.3e-54  Score=344.08  Aligned_cols=315  Identities=18%  Similarity=0.276  Sum_probs=271.9

Q ss_pred             hhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEe
Q psy17342          6 AGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASY   85 (401)
Q Consensus         6 ~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   85 (401)
                      .+..|+||+-|-++|+||...++.+...                            ..|...|.|++|+|||+.||+|+ 
T Consensus       126 ~g~~l~tGsGD~TvR~WD~~TeTp~~t~----------------------------KgH~~WVlcvawsPDgk~iASG~-  176 (480)
T KOG0271|consen  126 TGSRLVTGSGDTTVRLWDLDTETPLFTC----------------------------KGHKNWVLCVAWSPDGKKIASGS-  176 (480)
T ss_pred             CCceEEecCCCceEEeeccCCCCcceee----------------------------cCCccEEEEEEECCCcchhhccc-
Confidence            4568999999999999999888733222                            15779999999999999999999 


Q ss_pred             ccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCC----CceEEEEecCCeEEEEECCCCCCCceeeccc
Q psy17342         86 HRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFN----PYLILGGTYSGQIVLWDTRVQKKTPVHRTPL  161 (401)
Q Consensus        86 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~  161 (401)
                               .||.|++||.++++.+.....+|...|++++|.|-.    .++|++++.||.++|||+..+...      +
T Consensus       177 ---------~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~------~  241 (480)
T KOG0271|consen  177 ---------KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV------R  241 (480)
T ss_pred             ---------cCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEE------E
Confidence                     899999999999999888888899999999998742    358999999999999999887754      4


Q ss_pred             cccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEec-----------c-
Q psy17342        162 SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFP-----------Q-  229 (401)
Q Consensus       162 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~-  229 (401)
                      .+.+|+.+|+|++|   -...+++++|.|++|++|+...+ ....  .     +.+|...|+.++.+           | 
T Consensus       242 ~lsgHT~~VTCvrw---GG~gliySgS~DrtIkvw~a~dG-~~~r--~-----lkGHahwvN~lalsTdy~LRtgaf~~t  310 (480)
T KOG0271|consen  242 TLSGHTASVTCVRW---GGEGLIYSGSQDRTIKVWRALDG-KLCR--E-----LKGHAHWVNHLALSTDYVLRTGAFDHT  310 (480)
T ss_pred             EeccCccceEEEEE---cCCceEEecCCCceEEEEEccch-hHHH--h-----hcccchheeeeeccchhhhhccccccc
Confidence            46899999999999   24568999999999999998752 2221  2     45588888888776           1 


Q ss_pred             -----------------------CCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEE
Q psy17342        230 -----------------------NDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL  286 (401)
Q Consensus       230 -----------------------~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~  286 (401)
                                             ..+..+++|+.|..+++|+.... .+++..+.+|..-|+.+.|+|+      +.++|
T Consensus       311 ~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~-kkpi~rmtgHq~lVn~V~fSPd------~r~IA  383 (480)
T KOG0271|consen  311 GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS-KKPITRMTGHQALVNHVSFSPD------GRYIA  383 (480)
T ss_pred             cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc-ccchhhhhchhhheeeEEECCC------ccEEE
Confidence                                   12335999999999999997643 3467788999999999999999      89999


Q ss_pred             EEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEe
Q psy17342        287 TSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTW  366 (401)
Q Consensus       287 s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  366 (401)
                      +++.|..|++||.++|+.+.+|.+|-..|+.++|+.|.+ +|++|+.|.++++||+++.+....+   .+|...|.++.|
T Consensus       384 SaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkKl~~DL---pGh~DEVf~vDw  459 (480)
T KOG0271|consen  384 SASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKKLKQDL---PGHADEVFAVDW  459 (480)
T ss_pred             EeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeeeecccC---CCCCceEEEEEe
Confidence            999999999999999999999999999999999999997 9999999999999999997765554   368899999999


Q ss_pred             cCCCcEEEEEecCCcEEEEE
Q psy17342        367 TPNGTQLCVGDEKGAITMFD  386 (401)
Q Consensus       367 s~~g~~l~~~~~dg~v~iw~  386 (401)
                      +|||..+++|+.|..+++|.
T Consensus       460 spDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  460 SPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             cCCCceeecCCCceEEEeec
Confidence            99999999999999999995

>KOG0271|consensus

Probab=100.00  E-value=7.3e-50  Score=320.75  Aligned_cols=297  Identities=18%  Similarity=0.258  Sum_probs=254.8

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      +|.++|.|++|+|+|+.|++|+          .|.++++||+.+....... -+|...|.|++|+||+ ..||+|+.||+
T Consensus       113 GH~e~Vl~~~fsp~g~~l~tGs----------GD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPDg-k~iASG~~dg~  180 (480)
T KOG0271|consen  113 GHGEAVLSVQFSPTGSRLVTGS----------GDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPDG-KKIASGSKDGS  180 (480)
T ss_pred             CCCCcEEEEEecCCCceEEecC----------CCceEEeeccCCCCcceee-cCCccEEEEEEECCCc-chhhccccCCe
Confidence            5899999999999999999999          8999999999976555443 3479999999999988 79999999999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEee---cCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG---TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                      |++||..+++...     ..+.+|...|++++|.+   .|...+|++++.||.++|||+..   ....+.     ..+|.
T Consensus       181 I~lwdpktg~~~g-----~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~---~~~~~~-----lsgHT  247 (480)
T KOG0271|consen  181 IRLWDPKTGQQIG-----RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL---GTCVRT-----LSGHT  247 (480)
T ss_pred             EEEecCCCCCccc-----ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC---ceEEEE-----eccCc
Confidence            9999999887542     24689999999999954   45667999999999999999874   122222     45699


Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccC-----------CC----------
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQ-----------GH----------  278 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-----------~~----------  278 (401)
                      .+|+|+.|-  ...++++|+.|+.|++|+..  .+.+.+.+++|...|+.++.+.++           ..          
T Consensus       248 ~~VTCvrwG--G~gliySgS~DrtIkvw~a~--dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~  323 (480)
T KOG0271|consen  248 ASVTCVRWG--GEGLIYSGSQDRTIKVWRAL--DGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK  323 (480)
T ss_pred             cceEEEEEc--CCceEEecCCCceEEEEEcc--chhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence            999999996  56799999999999999987  455788999999999999887221           00          


Q ss_pred             ---------CCCCcEEEEEeCCCeEEEEEeeC-CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCC
Q psy17342        279 ---------IDFSHLYLTSSYDWSVKLWNIKE-NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV  348 (401)
Q Consensus       279 ---------~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  348 (401)
                               .+.++.+++|+.|.++.+|+... .+++..+.+|..-|+.+.||||++ ++|+++.|..|++||.++++.+
T Consensus       324 Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~tGk~l  402 (480)
T KOG0271|consen  324 ALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRTGKFL  402 (480)
T ss_pred             HHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc-EEEEeecccceeeeeCCCcchh
Confidence                     01145799999999999999754 568999999999999999999998 8999999999999999999988


Q ss_pred             cceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCcc
Q psy17342        349 PATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGI  392 (401)
Q Consensus       349 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~  392 (401)
                      ..++   +|-.+|..++|+.|.++|++|+.|.++++|++++.++
T Consensus       403 asfR---GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl  443 (480)
T KOG0271|consen  403 ASFR---GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL  443 (480)
T ss_pred             hhhh---hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee
Confidence            8875   6888999999999999999999999999999999753

>KOG0272|consensus

Probab=100.00  E-value=1.5e-48  Score=316.92  Aligned_cols=288  Identities=15%  Similarity=0.204  Sum_probs=258.2

Q ss_pred             cccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCC-CCceEEEEe
Q psy17342         60 EKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF-NPYLILGGT  138 (401)
Q Consensus        60 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~g~  138 (401)
                      .+++..++|..+.|+++++.|++|++          +|.++||+..+...+.. ..+|...|.++.|+|. ...-+++|+
T Consensus       170 SQ~gd~rPis~~~fS~ds~~laT~sw----------sG~~kvW~~~~~~~~~~-l~gH~~~v~~~~fhP~~~~~~lat~s  238 (459)
T KOG0272|consen  170 SQVGDTRPISGCSFSRDSKHLATGSW----------SGLVKVWSVPQCNLLQT-LRGHTSRVGAAVFHPVDSDLNLATAS  238 (459)
T ss_pred             hhccCCCcceeeEeecCCCeEEEeec----------CCceeEeecCCcceeEE-EeccccceeeEEEccCCCccceeeec
Confidence            33456699999999999999999995          99999999998754443 4568999999999997 356899999


Q ss_pred             cCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342        139 YSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       139 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      .||++++|++.+....      ..+.+|...|..++|  +|+|++|++++.|.+-++||+++.....      .  ..+|
T Consensus       239 ~Dgtvklw~~~~e~~l------~~l~gH~~RVs~Vaf--HPsG~~L~TasfD~tWRlWD~~tk~ElL------~--QEGH  302 (459)
T KOG0272|consen  239 ADGTVKLWKLSQETPL------QDLEGHLARVSRVAF--HPSGKFLGTASFDSTWRLWDLETKSELL------L--QEGH  302 (459)
T ss_pred             cCCceeeeccCCCcch------hhhhcchhhheeeee--cCCCceeeecccccchhhcccccchhhH------h--hccc
Confidence            9999999999887543      346899999999999  9999999999999999999998632211      1  4679


Q ss_pred             ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      ...|.+++|+ ++|..+++|+.|..-++||++  ++.++..+.+|..+|.+++|+|+      |..+||||.|++++|||
T Consensus       303 s~~v~~iaf~-~DGSL~~tGGlD~~~RvWDlR--tgr~im~L~gH~k~I~~V~fsPN------Gy~lATgs~Dnt~kVWD  373 (459)
T KOG0272|consen  303 SKGVFSIAFQ-PDGSLAATGGLDSLGRVWDLR--TGRCIMFLAGHIKEILSVAFSPN------GYHLATGSSDNTCKVWD  373 (459)
T ss_pred             ccccceeEec-CCCceeeccCccchhheeecc--cCcEEEEecccccceeeEeECCC------ceEEeecCCCCcEEEee
Confidence            9999999999 899999999999999999999  55688999999999999999999      89999999999999999


Q ss_pred             eeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEec
Q psy17342        299 IKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDE  378 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  378 (401)
                      ++..+++.++.+|..-|+.|+|+|....+|++++.|++++||.-.+..++..+   .+|...|.++..++|++++++++.
T Consensus       374 LR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL---aGHe~kV~s~Dis~d~~~i~t~s~  450 (459)
T KOG0272|consen  374 LRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL---AGHEGKVISLDISPDSQAIATSSF  450 (459)
T ss_pred             ecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh---cCCccceEEEEeccCCceEEEecc
Confidence            99999999999999999999999966569999999999999999998877776   489999999999999999999999


Q ss_pred             CCcEEEEE
Q psy17342        379 KGAITMFD  386 (401)
Q Consensus       379 dg~v~iw~  386 (401)
                      |.++++|.
T Consensus       451 DRT~KLW~  458 (459)
T KOG0272|consen  451 DRTIKLWR  458 (459)
T ss_pred             Cceeeecc
Confidence            99999995

>KOG0286|consensus

Probab=100.00  E-value=1.4e-44  Score=280.69  Aligned_cols=289  Identities=17%  Similarity=0.284  Sum_probs=251.3

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      +|...|.++.|++|.++|++++          .||.+.|||.-+...+..+.+. ...|..++|+|.+ +++|+|+-|+.
T Consensus        53 GH~~Ki~~~~ws~Dsr~ivSaS----------qDGklIvWDs~TtnK~haipl~-s~WVMtCA~sPSg-~~VAcGGLdN~  120 (343)
T KOG0286|consen   53 GHLNKIYAMDWSTDSRRIVSAS----------QDGKLIVWDSFTTNKVHAIPLP-SSWVMTCAYSPSG-NFVACGGLDNK  120 (343)
T ss_pred             ccccceeeeEecCCcCeEEeec----------cCCeEEEEEcccccceeEEecC-ceeEEEEEECCCC-CeEEecCcCce
Confidence            5889999999999999999999          8999999999887766666555 7789999999966 89999999999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      ..||++.........+....+.+|.+.+.++.|  . +..+|+++|.|.+..+||++++.   ....     +.+|...|
T Consensus       121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f--~-dD~~ilT~SGD~TCalWDie~g~---~~~~-----f~GH~gDV  189 (343)
T KOG0286|consen  121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRF--L-DDNHILTGSGDMTCALWDIETGQ---QTQV-----FHGHTGDV  189 (343)
T ss_pred             eEEEecccccccccceeeeeecCccceeEEEEE--c-CCCceEecCCCceEEEEEcccce---EEEE-----ecCCcccE
Confidence            999999866433333323346899999999999  3 46789999999999999998632   2222     45699999


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN  302 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  302 (401)
                      .+++++|.+++.+++|+-|+..++||++.  ..+.++|.+|...|+++.|.|+      +.-|++|+.|+++|+||++..
T Consensus       190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~--~~c~qtF~ghesDINsv~ffP~------G~afatGSDD~tcRlyDlRaD  261 (343)
T KOG0286|consen  190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRS--GQCVQTFEGHESDINSVRFFPS------GDAFATGSDDATCRLYDLRAD  261 (343)
T ss_pred             EEEecCCCCCCeEEecccccceeeeeccC--cceeEeecccccccceEEEccC------CCeeeecCCCceeEEEeecCC
Confidence            99999966999999999999999999994  4689999999999999999999      899999999999999999998


Q ss_pred             CceEEEee--cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCC
Q psy17342        303 KPVHSFNE--FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG  380 (401)
Q Consensus       303 ~~~~~~~~--~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  380 (401)
                      +.+..+..  -..+|++++||..|+ +|.+|..|.++.+||.-.++.+..+   .+|...|+++..+|||..|++|+.|.
T Consensus       262 ~~~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk~e~vg~L---~GHeNRvScl~~s~DG~av~TgSWDs  337 (343)
T KOG0286|consen  262 QELAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLKGERVGVL---AGHENRVSCLGVSPDGMAVATGSWDS  337 (343)
T ss_pred             cEEeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeeccccceEEEe---eccCCeeEEEEECCCCcEEEecchhH
Confidence            88888764  245799999999998 7888889999999999887766555   48999999999999999999999999


Q ss_pred             cEEEEE
Q psy17342        381 AITMFD  386 (401)
Q Consensus       381 ~v~iw~  386 (401)
                      .++||.
T Consensus       338 ~lriW~  343 (343)
T KOG0286|consen  338 TLRIWA  343 (343)
T ss_pred             heeecC
Confidence            999994

>KOG0272|consensus

Probab=100.00  E-value=1.4e-44  Score=293.89  Aligned_cols=272  Identities=18%  Similarity=0.241  Sum_probs=238.9

Q ss_pred             hhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCC--CCCeEE
Q psy17342          5 EAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQ--HPELLL   82 (401)
Q Consensus         5 ~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~   82 (401)
                      ..++.|+||+.+|.++||....-+.                        ...|    .+|...|.++.|+|.  +..||+
T Consensus       185 ~ds~~laT~swsG~~kvW~~~~~~~------------------------~~~l----~gH~~~v~~~~fhP~~~~~~lat  236 (459)
T KOG0272|consen  185 RDSKHLATGSWSGLVKVWSVPQCNL------------------------LQTL----RGHTSRVGAAVFHPVDSDLNLAT  236 (459)
T ss_pred             cCCCeEEEeecCCceeEeecCCcce------------------------eEEE----eccccceeeEEEccCCCccceee
Confidence            4578899999999999998754431                        1111    157789999999997  568999


Q ss_pred             EEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecccc
Q psy17342         83 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLS  162 (401)
Q Consensus        83 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~  162 (401)
                      ++          .||++++|++++...+..+. +|...|..++|+|+| ++|++++.|.+-++||+.++...      +.
T Consensus       237 ~s----------~Dgtvklw~~~~e~~l~~l~-gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~El------L~  298 (459)
T KOG0272|consen  237 AS----------ADGTVKLWKLSQETPLQDLE-GHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSEL------LL  298 (459)
T ss_pred             ec----------cCCceeeeccCCCcchhhhh-cchhhheeeeecCCC-ceeeecccccchhhcccccchhh------Hh
Confidence            99          79999999999766666554 467999999999987 89999999999999999998765      33


Q ss_pred             ccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCc
Q psy17342        163 VMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG  242 (401)
Q Consensus       163 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  242 (401)
                      ..+|...|.+++|  .++|.++++|+.|..-++||++++   ...+.     +.+|..+|.+++|+ |+|..+++|+.|+
T Consensus       299 QEGHs~~v~~iaf--~~DGSL~~tGGlD~~~RvWDlRtg---r~im~-----L~gH~k~I~~V~fs-PNGy~lATgs~Dn  367 (459)
T KOG0272|consen  299 QEGHSKGVFSIAF--QPDGSLAATGGLDSLGRVWDLRTG---RCIMF-----LAGHIKEILSVAFS-PNGYHLATGSSDN  367 (459)
T ss_pred             hcccccccceeEe--cCCCceeeccCccchhheeecccC---cEEEE-----ecccccceeeEeEC-CCceEEeecCCCC
Confidence            4799999999999  999999999999999999999973   23333     45599999999999 8999999999999


Q ss_pred             eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECC
Q psy17342        243 NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP  322 (401)
Q Consensus       243 ~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  322 (401)
                      .++|||++...  .+.++.+|..-|+.+.|.|..     +.+|+|++.|++++||..++..+++++.+|.+.|.+++.+|
T Consensus       368 t~kVWDLR~r~--~ly~ipAH~nlVS~Vk~~p~~-----g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~  440 (459)
T KOG0272|consen  368 TCKVWDLRMRS--ELYTIPAHSNLVSQVKYSPQE-----GYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP  440 (459)
T ss_pred             cEEEeeecccc--cceecccccchhhheEecccC-----CeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc
Confidence            99999999654  588999999999999999965     89999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEecCCEEEEEe
Q psy17342        323 INPALFATVEVAGRVDLWN  341 (401)
Q Consensus       323 ~~~~~l~~~~~d~~i~iwd  341 (401)
                      +++ .+++++.|.++++|.
T Consensus       441 d~~-~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  441 DSQ-AIATSSFDRTIKLWR  458 (459)
T ss_pred             CCc-eEEEeccCceeeecc
Confidence            997 899999999999995

>KOG0273|consensus

Probab=100.00  E-value=5.8e-42  Score=282.34  Aligned_cols=332  Identities=20%  Similarity=0.352  Sum_probs=268.5

Q ss_pred             hhhhhc-cccccccccccccccccCCCCCCCCccccc--cccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCC
Q psy17342          3 WAEAGE-SQISGTLHGLQADWNEEGDPGLPQLPQDLQ--FDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPE   79 (401)
Q Consensus         3 ~~~~~~-~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   79 (401)
                      |--+.+ .+++|+.|-..|+|++......-.....++  +...+                .....+..|++++|+.+|..
T Consensus       186 WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~----------------~s~~~nkdVT~L~Wn~~G~~  249 (524)
T KOG0273|consen  186 WNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGG----------------KSVPSNKDVTSLDWNNDGTL  249 (524)
T ss_pred             cCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhc----------------ccCCccCCcceEEecCCCCe
Confidence            444334 788999999999998875322211111222  11111                11123467999999999999


Q ss_pred             eEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeec
Q psy17342         80 LLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRT  159 (401)
Q Consensus        80 l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~  159 (401)
                      ||+|.          .||.++||+.. +.....+ ..|.++|.++.|+..| .+|++++.|+++.+||..++....    
T Consensus       250 LatG~----------~~G~~riw~~~-G~l~~tl-~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q----  312 (524)
T KOG0273|consen  250 LATGS----------EDGEARIWNKD-GNLISTL-GQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQ----  312 (524)
T ss_pred             EEEee----------cCcEEEEEecC-chhhhhh-hccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEE----
Confidence            99999          69999999988 4444333 3479999999999977 799999999999999998877542    


Q ss_pred             cccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc
Q psy17342        160 PLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC  239 (401)
Q Consensus       160 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  239 (401)
                        .+.-|..+-.++.|   .+...|++++.|+.|+++.+.. ..|..+       +.+|..+|.++.|+ |.+.+|++++
T Consensus       313 --~f~~~s~~~lDVdW---~~~~~F~ts~td~~i~V~kv~~-~~P~~t-------~~GH~g~V~alk~n-~tg~LLaS~S  378 (524)
T KOG0273|consen  313 --QFEFHSAPALDVDW---QSNDEFATSSTDGCIHVCKVGE-DRPVKT-------FIGHHGEVNALKWN-PTGSLLASCS  378 (524)
T ss_pred             --eeeeccCCccceEE---ecCceEeecCCCceEEEEEecC-CCccee-------eecccCceEEEEEC-CCCceEEEec
Confidence              23567777788999   3666899999999999999865 334433       45599999999999 8999999999


Q ss_pred             CCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCC---CCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceE
Q psy17342        240 EDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQG---HIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVM  316 (401)
Q Consensus       240 ~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~---~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  316 (401)
                      .|+++++|...  .......+.+|...|+.+.|+|...   .+..+..+++++.|++|++||+..+.++++|..|..+|+
T Consensus       379 dD~TlkiWs~~--~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVy  456 (524)
T KOG0273|consen  379 DDGTLKIWSMG--QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVY  456 (524)
T ss_pred             CCCeeEeeecC--CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceE
Confidence            99999999976  3346788999999999999999752   233367899999999999999999999999999999999


Q ss_pred             EEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEec
Q psy17342        317 DVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       317 ~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~  388 (401)
                      +++|+|+|+ ++|+|+.||.|.||+.++++....+    .....|..++|+.+|.+|..+-.||.+.+-|++
T Consensus       457 svafS~~g~-ylAsGs~dg~V~iws~~~~~l~~s~----~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  457 SVAFSPNGR-YLASGSLDGCVHIWSTKTGKLVKSY----QGTGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             EEEecCCCc-EEEecCCCCeeEeccccchheeEee----cCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            999999998 8999999999999999998866554    456779999999999999999999999999985

>KOG0279|consensus

Probab=100.00  E-value=1.3e-41  Score=262.53  Aligned_cols=290  Identities=18%  Similarity=0.278  Sum_probs=238.5

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcC-----CCCCceEEEecCCCeeEEEEeCCCCceEEEE
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKF-----KKTTPEFEFFCQSPVLSCCFAKFNPYLILGG  137 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g  137 (401)
                      .|++.|+.++..+.++.++..+         +.|.++.+|++..     |..+..+ .+|...|..+..++++ ++.+++
T Consensus        13 gh~d~Vt~la~~~~~~~~l~sa---------srDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~v~dv~~s~dg-~~alS~   81 (315)
T KOG0279|consen   13 GHTDWVTALAIKIKNSDILVSA---------SRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHFVSDVVLSSDG-NFALSA   81 (315)
T ss_pred             CCCceEEEEEeecCCCceEEEc---------ccceEEEEEEeccCccccCceeeee-eccceEecceEEccCC-ceEEec
Confidence            5889999999999876655555         3899999999865     2223333 3478999999999988 899999


Q ss_pred             ecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccC
Q psy17342        138 TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT  217 (401)
Q Consensus       138 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  217 (401)
                      +.|+++++||+.+++..      ..+.+|...|.+++|  +++..++++|+.|.+|++|++..  ...  .++..   ..
T Consensus        82 swD~~lrlWDl~~g~~t------~~f~GH~~dVlsva~--s~dn~qivSGSrDkTiklwnt~g--~ck--~t~~~---~~  146 (315)
T KOG0279|consen   82 SWDGTLRLWDLATGEST------RRFVGHTKDVLSVAF--STDNRQIVSGSRDKTIKLWNTLG--VCK--YTIHE---DS  146 (315)
T ss_pred             cccceEEEEEecCCcEE------EEEEecCCceEEEEe--cCCCceeecCCCcceeeeeeecc--cEE--EEEec---CC
Confidence            99999999999998643      336799999999999  99999999999999999999863  222  22221   22


Q ss_pred             CccceEEEEeccCC-CCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEE
Q psy17342        218 KNLAVLSLAFPQND-VNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKL  296 (401)
Q Consensus       218 ~~~~v~~~~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~i  296 (401)
                      +...|.|+.|+|.. ..+|++++.|+.|++||+++.  +....+.+|.+.++.+.++|+      |.++++|+.||.+.+
T Consensus       147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~--~l~~~~~gh~~~v~t~~vSpD------GslcasGgkdg~~~L  218 (315)
T KOG0279|consen  147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC--QLRTTFIGHSGYVNTVTVSPD------GSLCASGGKDGEAML  218 (315)
T ss_pred             CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc--chhhccccccccEEEEEECCC------CCEEecCCCCceEEE
Confidence            37899999999543 778999999999999999854  467788999999999999999      899999999999999


Q ss_pred             EEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecC------CCCeEEEEecCCC
Q psy17342        297 WNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG------APALSRVTWTPNG  370 (401)
Q Consensus       297 wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~~~v~~~~~s~~g  370 (401)
                      ||++.++.+..+.. ...|.+++|+|+.. .|+.+ .+..|+|||+.++..+..+.....+      .....+++|++||
T Consensus       219 wdL~~~k~lysl~a-~~~v~sl~fspnry-wL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG  295 (315)
T KOG0279|consen  219 WDLNEGKNLYSLEA-FDIVNSLCFSPNRY-WLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADG  295 (315)
T ss_pred             EEccCCceeEeccC-CCeEeeEEecCCce-eEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCC
Confidence            99999999888775 78999999999985 45544 4567999999998877665543222      2346789999999


Q ss_pred             cEEEEEecCCcEEEEEecc
Q psy17342        371 TQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       371 ~~l~~~~~dg~v~iw~~~~  389 (401)
                      ..|++|..|+.|++|.+..
T Consensus       296 ~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  296 QTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             cEEEeeecCCcEEEEEeec
Confidence            9999999999999999853

>KOG0284|consensus

Probab=100.00  E-value=9.4e-44  Score=287.85  Aligned_cols=287  Identities=19%  Similarity=0.334  Sum_probs=249.3

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQI  143 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v  143 (401)
                      -+.+|..+.|.|+|+.|++|+          ..|.+.+|+..+ -....+...|..+|.++.|++++ .++++|+.+|.|
T Consensus        95 vkc~V~~v~WtPeGRRLltgs----------~SGEFtLWNg~~-fnFEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~i  162 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGS----------QSGEFTLWNGTS-FNFETILQAHDSPVRTMKWSHNG-TWMISGDKGGMI  162 (464)
T ss_pred             cccceeeEEEcCCCceeEeec----------ccccEEEecCce-eeHHHHhhhhcccceeEEEccCC-CEEEEcCCCceE
Confidence            346799999999999999999          799999999853 22333445689999999999977 899999999999


Q ss_pred             EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceE
Q psy17342        144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL  223 (401)
Q Consensus       144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (401)
                      ++|+.+-......      ...|...|++++|  +|+...|++++.||+|+|||....   .+...     +.+|.-.|.
T Consensus       163 KyWqpnmnnVk~~------~ahh~eaIRdlaf--SpnDskF~t~SdDg~ikiWdf~~~---kee~v-----L~GHgwdVk  226 (464)
T KOG0284|consen  163 KYWQPNMNNVKII------QAHHAEAIRDLAF--SPNDSKFLTCSDDGTIKIWDFRMP---KEERV-----LRGHGWDVK  226 (464)
T ss_pred             EecccchhhhHHh------hHhhhhhhheecc--CCCCceeEEecCCCeEEEEeccCC---chhhe-----eccCCCCcc
Confidence            9999876654311      2345599999999  889999999999999999999752   22222     345889999


Q ss_pred             EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC
Q psy17342        224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK  303 (401)
Q Consensus       224 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  303 (401)
                      +++|+ |...++++|+.|..|++||.+  +..++.++.+|+..|..+.|+|+      +++|+++|.|..++++|+++.+
T Consensus       227 svdWH-P~kgLiasgskDnlVKlWDpr--Sg~cl~tlh~HKntVl~~~f~~n------~N~Llt~skD~~~kv~DiR~mk  297 (464)
T KOG0284|consen  227 SVDWH-PTKGLIASGSKDNLVKLWDPR--SGSCLATLHGHKNTVLAVKFNPN------GNWLLTGSKDQSCKVFDIRTMK  297 (464)
T ss_pred             eeccC-CccceeEEccCCceeEeecCC--CcchhhhhhhccceEEEEEEcCC------CCeeEEccCCceEEEEehhHhH
Confidence            99999 788999999999999999998  55588999999999999999999      7999999999999999999999


Q ss_pred             ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEE
Q psy17342        304 PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAIT  383 (401)
Q Consensus       304 ~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~  383 (401)
                      .++++++|...|+++.|+|-...+|.+|+.||.|..|.+...+.+..+  ..+|...|++++|+|-|.+|++|+.|.+++
T Consensus       298 El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i--~~AHd~~iwsl~~hPlGhil~tgsnd~t~r  375 (464)
T KOG0284|consen  298 ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI--PPAHDGEIWSLAYHPLGHILATGSNDRTVR  375 (464)
T ss_pred             HHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCC--CcccccceeeeeccccceeEeecCCCccee
Confidence            999999999999999999998889999999999999999855544443  457889999999999999999999999999


Q ss_pred             EEEecc
Q psy17342        384 MFDVGE  389 (401)
Q Consensus       384 iw~~~~  389 (401)
                      +|.-..
T Consensus       376 fw~r~r  381 (464)
T KOG0284|consen  376 FWTRNR  381 (464)
T ss_pred             eeccCC
Confidence            998653

>KOG0315|consensus

Probab=100.00  E-value=8.3e-42  Score=259.36  Aligned_cols=291  Identities=19%  Similarity=0.245  Sum_probs=243.1

Q ss_pred             cccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEeccC
Q psy17342          9 SQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRN   88 (401)
Q Consensus         9 ~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~   88 (401)
                      .++|+++|.+||.|....+.....++                            .....|+.+...|+++.||+++    
T Consensus        12 iLvsA~YDhTIRfWqa~tG~C~rTiq----------------------------h~dsqVNrLeiTpdk~~LAaa~----   59 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQALTGICSRTIQ----------------------------HPDSQVNRLEITPDKKDLAAAG----   59 (311)
T ss_pred             EEEeccCcceeeeeehhcCeEEEEEe----------------------------cCccceeeEEEcCCcchhhhcc----
Confidence            58899999999999988777443331                            1125699999999999999999    


Q ss_pred             CCCCCCCCcEEEEEeCcCCCCCceEEEe-cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCC
Q psy17342         89 KEAPNEPDGVCLIWNTKFKKTTPEFEFF-CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHT  167 (401)
Q Consensus        89 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  167 (401)
                             ...|++||+.+++..+...+. |...|+++.|..+| +.+++|++||+++|||++......       ...|.
T Consensus        60 -------~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR-------~~~~~  124 (311)
T KOG0315|consen   60 -------NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQR-------NYQHN  124 (311)
T ss_pred             -------CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCcccch-------hccCC
Confidence                   689999999998877777776 67899999999987 899999999999999999854432       24678


Q ss_pred             CcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEE
Q psy17342        168 HPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSA  247 (401)
Q Consensus       168 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~  247 (401)
                      .+|+++..  +|+...|++|..+|.|++||+....   ...++.    ......|.++... +++..++.+...|.+++|
T Consensus       125 spVn~vvl--hpnQteLis~dqsg~irvWDl~~~~---c~~~li----Pe~~~~i~sl~v~-~dgsml~a~nnkG~cyvW  194 (311)
T KOG0315|consen  125 SPVNTVVL--HPNQTELISGDQSGNIRVWDLGENS---CTHELI----PEDDTSIQSLTVM-PDGSMLAAANNKGNCYVW  194 (311)
T ss_pred             CCcceEEe--cCCcceEEeecCCCcEEEEEccCCc---cccccC----CCCCcceeeEEEc-CCCcEEEEecCCccEEEE
Confidence            99999998  8999999999999999999997522   122221    1244689999999 899999999999999999


Q ss_pred             eCCCC----CCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC-CceEEEeecCCceEEEEECC
Q psy17342        248 CRHGN----KAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN-KPVHSFNEFRDYVMDVQWSP  322 (401)
Q Consensus       248 ~~~~~----~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~~  322 (401)
                      ++-..    ...++..++.|.+.+..+.++|+      +++|+++|.|.+++||+.++. +....+++|...++.++||.
T Consensus       195 ~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd------~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~  268 (311)
T KOG0315|consen  195 RLLNHQTASELEPVHKFQAHNGHILRCLLSPD------VKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA  268 (311)
T ss_pred             EccCCCccccceEhhheecccceEEEEEECCC------CcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc
Confidence            98653    23466788999999999999999      799999999999999999887 66677889999999999999


Q ss_pred             CCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEe
Q psy17342        323 INPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTW  366 (401)
Q Consensus       323 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  366 (401)
                      ++. +|++++.|+.+++||+..++.+..+   .+|.....+++.
T Consensus       269 dg~-YlvTassd~~~rlW~~~~~k~v~qy---~gh~K~~vc~~l  308 (311)
T KOG0315|consen  269 DGE-YLVTASSDHTARLWDLSAGKEVRQY---QGHHKAAVCVAL  308 (311)
T ss_pred             Ccc-EEEecCCCCceeecccccCceeeec---CCcccccEEEEe
Confidence            997 8999999999999999998876554   356666666654

>KOG0273|consensus

Probab=100.00  E-value=8.5e-42  Score=281.39  Aligned_cols=293  Identities=18%  Similarity=0.358  Sum_probs=244.9

Q ss_pred             ccccceEEEEecCCCC-CeEEEEeccCCCCCCCCCcEEEEEeCcC--CCCCceEEE-----------ecCCCeeEEEEeC
Q psy17342         63 SKNRNVTYMDWSTQHP-ELLLASYHRNKEAPNEPDGVCLIWNTKF--KKTTPEFEF-----------FCQSPVLSCCFAK  128 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~d~~v~iwd~~~--~~~~~~~~~-----------~~~~~v~~~~~~~  128 (401)
                      .|..+|.+.+|+|-.. .|++++          .+...++|++..  ........+           ..+..|++++|+.
T Consensus       176 ~~~~~V~~~~WnP~~~~llasg~----------~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~  245 (524)
T KOG0273|consen  176 RHESEVFICAWNPLRDGLLASGS----------GDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN  245 (524)
T ss_pred             cCCCceEEEecCchhhhhhhccC----------CccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC
Confidence            3788999999999877 566666          799999999874  111111111           1246899999999


Q ss_pred             CCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccc
Q psy17342        129 FNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETR  208 (401)
Q Consensus       129 ~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~  208 (401)
                      +| .+|++|+.||.+++|+......       .++..|.++|.++.|  +..|.+|++++.|+++.+||..++ ...+.+
T Consensus       246 ~G-~~LatG~~~G~~riw~~~G~l~-------~tl~~HkgPI~slKW--nk~G~yilS~~vD~ttilwd~~~g-~~~q~f  314 (524)
T KOG0273|consen  246 DG-TLLATGSEDGEARIWNKDGNLI-------STLGQHKGPIFSLKW--NKKGTYILSGGVDGTTILWDAHTG-TVKQQF  314 (524)
T ss_pred             CC-CeEEEeecCcEEEEEecCchhh-------hhhhccCCceEEEEE--cCCCCEEEeccCCccEEEEeccCc-eEEEee
Confidence            77 8999999999999999987653       346889999999999  999999999999999999998752 223332


Q ss_pred             ccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEE
Q psy17342        209 DLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS  288 (401)
Q Consensus       209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~  288 (401)
                      .+       |..+-..+.|-  +...+++.+.|+.|+++.+...  .++.++.+|.++|.++.|+|.      +.+|+++
T Consensus       315 ~~-------~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~--~P~~t~~GH~g~V~alk~n~t------g~LLaS~  377 (524)
T KOG0273|consen  315 EF-------HSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGED--RPVKTFIGHHGEVNALKWNPT------GSLLASC  377 (524)
T ss_pred             ee-------ccCCccceEEe--cCceEeecCCCceEEEEEecCC--CcceeeecccCceEEEEECCC------CceEEEe
Confidence            22       44555667775  6778999999999999998744  478899999999999999999      8999999


Q ss_pred             eCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCC--------cEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCC
Q psy17342        289 SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINP--------ALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPA  360 (401)
Q Consensus       289 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~--------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  360 (401)
                      +.|++++||+.........+..|...|..+.|+|.|+        ..+++++.|++|++||+..+.++..+   ..|..+
T Consensus       378 SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f---~kH~~p  454 (524)
T KOG0273|consen  378 SDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL---MKHQEP  454 (524)
T ss_pred             cCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee---ccCCCc
Confidence            9999999999999999999999999999999999763        47899999999999999998876654   478999


Q ss_pred             eEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeee
Q psy17342        361 LSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFI  398 (401)
Q Consensus       361 v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~  398 (401)
                      |.+++|+|+|++||+|+.||.|.+|++++++  .++.+
T Consensus       455 VysvafS~~g~ylAsGs~dg~V~iws~~~~~--l~~s~  490 (524)
T KOG0273|consen  455 VYSVAFSPNGRYLASGSLDGCVHIWSTKTGK--LVKSY  490 (524)
T ss_pred             eEEEEecCCCcEEEecCCCCeeEeccccchh--eeEee
Confidence            9999999999999999999999999999984  45544

>KOG0315|consensus

Probab=100.00  E-value=5.2e-41  Score=255.07  Aligned_cols=274  Identities=16%  Similarity=0.223  Sum_probs=228.7

Q ss_pred             CeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceee
Q psy17342         79 ELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHR  158 (401)
Q Consensus        79 ~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~  158 (401)
                      .|++++          .|.+|++|...+|.+..++. +..+.|+.+...|++ ..|++++ .-.|++||+++....++  
T Consensus        12 iLvsA~----------YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk-~~LAaa~-~qhvRlyD~~S~np~Pv--   76 (311)
T KOG0315|consen   12 ILVSAG----------YDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDK-KDLAAAG-NQHVRLYDLNSNNPNPV--   76 (311)
T ss_pred             EEEecc----------CcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCc-chhhhcc-CCeeEEEEccCCCCCce--
Confidence            577888          49999999999998886554 337899999999977 6676664 56899999999887655  


Q ss_pred             ccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEE
Q psy17342        159 TPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVG  238 (401)
Q Consensus       159 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  238 (401)
                        .++.+|+..|.++.|  ..+|+.+++|++||+++|||++... .+.        ...+..+|+++..+ |+...|++|
T Consensus        77 --~t~e~h~kNVtaVgF--~~dgrWMyTgseDgt~kIWdlR~~~-~qR--------~~~~~spVn~vvlh-pnQteLis~  142 (311)
T KOG0315|consen   77 --ATFEGHTKNVTAVGF--QCDGRWMYTGSEDGTVKIWDLRSLS-CQR--------NYQHNSPVNTVVLH-PNQTELISG  142 (311)
T ss_pred             --eEEeccCCceEEEEE--eecCeEEEecCCCceEEEEeccCcc-cch--------hccCCCCcceEEec-CCcceEEee
Confidence              557899999999999  8999999999999999999998622 111        22266899999999 888999999


Q ss_pred             cCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC------CceEEEeecC
Q psy17342        239 CEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN------KPVHSFNEFR  312 (401)
Q Consensus       239 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------~~~~~~~~~~  312 (401)
                      ..+|.|++||+....... ........+|.++...|+      +..++.+...|+.++|++-..      +++..++.|+
T Consensus       143 dqsg~irvWDl~~~~c~~-~liPe~~~~i~sl~v~~d------gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~  215 (311)
T KOG0315|consen  143 DQSGNIRVWDLGENSCTH-ELIPEDDTSIQSLTVMPD------GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN  215 (311)
T ss_pred             cCCCcEEEEEccCCcccc-ccCCCCCcceeeEEEcCC------CcEEEEecCCccEEEEEccCCCccccceEhhheeccc
Confidence            999999999998653211 122334578999999999      899999999999999998653      4677788999


Q ss_pred             CceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        313 DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       313 ~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      +.+..+.+||+++ +||+++.|.+++||+..+.  +..-....+|...++.++||.||.||++|+.|+.+++|++..++
T Consensus       216 ~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k  291 (311)
T KOG0315|consen  216 GHILRCLLSPDVK-YLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK  291 (311)
T ss_pred             ceEEEEEECCCCc-EEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence            9999999999998 8999999999999999876  22222234677899999999999999999999999999999985

>KOG0319|consensus

Probab=100.00  E-value=4.6e-42  Score=297.54  Aligned_cols=342  Identities=18%  Similarity=0.228  Sum_probs=268.2

Q ss_pred             CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCC-
Q psy17342          1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPE-   79 (401)
Q Consensus         1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-   79 (401)
                      |+...-+..+++|+.||.++|||...+..+    ..++                        +|.+.|.++.|+|+-.+ 
T Consensus       111 ma~~~~g~LlAtggaD~~v~VWdi~~~~~t----h~fk------------------------G~gGvVssl~F~~~~~~~  162 (775)
T KOG0319|consen  111 MAFDPTGTLLATGGADGRVKVWDIKNGYCT----HSFK------------------------GHGGVVSSLLFHPHWNRW  162 (775)
T ss_pred             EEEcCCCceEEeccccceEEEEEeeCCEEE----EEec------------------------CCCceEEEEEeCCccchh
Confidence            344455678999999999999999877621    1122                        57799999999998765 


Q ss_pred             -eEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCC-----
Q psy17342         80 -LLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKK-----  153 (401)
Q Consensus        80 -l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~-----  153 (401)
                       |+++.          .|+++++||+.+..........|.+.|++++|++++ .-+++++.|..+.|||+.+.+.     
T Consensus       163 lL~sg~----------~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~-~~~ls~~RDkvi~vwd~~~~~~l~~lp  231 (775)
T KOG0319|consen  163 LLASGA----------TDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDS-LELLSVGRDKVIIVWDLVQYKKLKTLP  231 (775)
T ss_pred             heeecC----------CCceEEEEEcccCchHHHHHHhhhhheeeeeeccCC-ceEEEeccCcEEEEeehhhhhhhheec
Confidence             45555          899999999986544222233478899999999986 5666667888888888754322     


Q ss_pred             --------------------------------------------------------------------------------
Q psy17342        154 --------------------------------------------------------------------------------  153 (401)
Q Consensus       154 --------------------------------------------------------------------------------  153 (401)
                                                                                                      
T Consensus       232 ~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~  311 (775)
T KOG0319|consen  232 LYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDED  311 (775)
T ss_pred             hhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEcc
Confidence                                                                                            


Q ss_pred             ---------------------------------Cc---eee----ccccccCCCCcEEEEEEeecCCceEEEEEeCCCcE
Q psy17342        154 ---------------------------------TP---VHR----TPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRL  193 (401)
Q Consensus       154 ---------------------------------~~---~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i  193 (401)
                                                       .+   ...    ...-+.+|...|.++..  ..+|.+|++|+.|.++
T Consensus       312 ~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~--~~~g~llat~sKD~sv  389 (775)
T KOG0319|consen  312 ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDV--WSSGDLLATGSKDKSV  389 (775)
T ss_pred             ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeee--cccCcEEEEecCCceE
Confidence                                             00   000    00013567777777774  4567899999999999


Q ss_pred             EEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCC--C-c----eeeecCCCCc
Q psy17342        194 CSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKA--G-N----VECYEGHEGP  266 (401)
Q Consensus       194 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--~-~----~~~~~~~~~~  266 (401)
                      ++|.++..  ......+..  ..+|...|.+++++......|++++.|+.+++|++...+.  . .    ..+...|...
T Consensus       390 ilWr~~~~--~~~~~~~a~--~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKd  465 (775)
T KOG0319|consen  390 ILWRLNNN--CSKSLCVAQ--ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKD  465 (775)
T ss_pred             EEEEecCC--cchhhhhhh--hcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhccc
Confidence            99998531  222222222  5679999999999866778899999999999999875211  1 1    1234579999


Q ss_pred             eeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342        267 VVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT  346 (401)
Q Consensus       267 v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~  346 (401)
                      |++++++|+      ..+++|||.|++.+||+++..+...++.+|...|++|.|+|..+ +++++|.|++|+||.+.+..
T Consensus       466 IN~Vaia~n------dkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~fS  538 (775)
T KOG0319|consen  466 INCVAIAPN------DKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSISTFS  538 (775)
T ss_pred             ccceEecCC------CceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccc-eeEeccCCceEEEEEeccce
Confidence            999999999      69999999999999999999999999999999999999999987 89999999999999999998


Q ss_pred             CCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeeee
Q psy17342        347 EVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT  399 (401)
Q Consensus       347 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~~  399 (401)
                      ++.++.   +|...|..+.|-.+|+.|++++.||.|++|+++++  .|+.++-
T Consensus       539 ClkT~e---GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~--eC~~tlD  586 (775)
T KOG0319|consen  539 CLKTFE---GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN--ECEMTLD  586 (775)
T ss_pred             eeeeec---CccceeEeeeeeeCCcEEEeccCCCcEEEEeccch--hhhhhhh
Confidence            887764   78999999999999999999999999999999998  6777653

>KOG0318|consensus

Probab=100.00  E-value=4.4e-40  Score=274.86  Aligned_cols=302  Identities=16%  Similarity=0.230  Sum_probs=241.4

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE--ecCCCeeEEEEeCCCCceEEEEecC
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF--FCQSPVLSCCFAKFNPYLILGGTYS  140 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~g~~d  140 (401)
                      .|..-|.|++|+|||.++++++          .||++.+||-++++.+..+.-  .|.+.|++++|+||+ ..+++.+.|
T Consensus       188 ~HskFV~~VRysPDG~~Fat~g----------sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaD  256 (603)
T KOG0318|consen  188 EHSKFVNCVRYSPDGSRFATAG----------SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS-TQFLTVSAD  256 (603)
T ss_pred             ccccceeeEEECCCCCeEEEec----------CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC-ceEEEecCC
Confidence            3778899999999999999999          899999999999887776652  378999999999988 678888999


Q ss_pred             CeEEEEECCCCCCCcee-------------------------------------eccccccCCCCcEEEEEEeecCCceE
Q psy17342        141 GQIVLWDTRVQKKTPVH-------------------------------------RTPLSVMAHTHPVFCMSVIGTQNAHN  183 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~  183 (401)
                      .+++|||+.+.......                                     ..+..+.+|...|+++..  ++++.+
T Consensus       257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv--~~d~~~  334 (603)
T KOG0318|consen  257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTV--SPDGKT  334 (603)
T ss_pred             ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEE--cCCCCE
Confidence            99999999876541110                                     011235799999999999  999999


Q ss_pred             EEEEeCCCcEEEeeccCCCCCccc--------c-----------------------------------ccccc-------
Q psy17342        184 LISISNDGRLCSWSLEMLSSPQET--------R-----------------------------------DLQYN-------  213 (401)
Q Consensus       184 l~s~~~dg~i~~wd~~~~~~~~~~--------~-----------------------------------~~~~~-------  213 (401)
                      |++|+.||.|.-|+...+......        .                                   ++..+       
T Consensus       335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~  414 (603)
T KOG0318|consen  335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL  414 (603)
T ss_pred             EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence            999999999999998653211100        0                                   00000       


Q ss_pred             ---------------c--------ccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeee
Q psy17342        214 ---------------N--------KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGL  270 (401)
Q Consensus       214 ---------------~--------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i  270 (401)
                                     .        .....-...+++++ ++++.+++|+.|+.|++|.+.+...........|.++|+++
T Consensus       415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~-~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v  493 (603)
T KOG0318|consen  415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS-PDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDV  493 (603)
T ss_pred             CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEc-CCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEE
Confidence                           0        00112234567788 89999999999999999999876544455666799999999


Q ss_pred             ecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceE-EEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCc
Q psy17342        271 SSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVH-SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVP  349 (401)
Q Consensus       271 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  349 (401)
                      +++|+      +.+||+|...+.+.+||+.+.+... .+..|...|.+++|+|+.. ++|+|+.|.+|.||+++..... 
T Consensus       494 aySpd------~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP~~~-  565 (603)
T KOG0318|consen  494 AYSPD------GAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKPAKH-  565 (603)
T ss_pred             EECCC------CcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccChhhh-
Confidence            99999      8999999999999999998876533 3445999999999999997 8999999999999999877654 


Q ss_pred             ceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEec
Q psy17342        350 ATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       350 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~  388 (401)
                       +.....|...|+.+.|- +...|++.+.|-.|++|++.
T Consensus       566 -i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  566 -IIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             -eEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence             45556787789999996 55678899999999999974

>KOG0645|consensus

Probab=100.00  E-value=8.6e-40  Score=251.40  Aligned_cols=290  Identities=15%  Similarity=0.252  Sum_probs=237.4

Q ss_pred             ccccceEEEEecCC-CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC---ceEEEecCCCeeEEEEeCCCCceEEEEe
Q psy17342         63 SKNRNVTYMDWSTQ-HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT---PEFEFFCQSPVLSCCFAKFNPYLILGGT  138 (401)
Q Consensus        63 ~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~g~  138 (401)
                      .|.+.+..++|+|- |..|++++          .|..|++|+...+...   ..+.-.|...|.+++|+|.+ ++|++|+
T Consensus        12 gh~~r~W~~awhp~~g~ilAscg----------~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aS   80 (312)
T KOG0645|consen   12 GHKDRVWSVAWHPGKGVILASCG----------TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG-RYLASAS   80 (312)
T ss_pred             CCCCcEEEEEeccCCceEEEeec----------CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC-cEEEEee
Confidence            56789999999998 87788888          8999999999853221   11122378999999999987 7999999


Q ss_pred             cCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342        139 YSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       139 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      .|.++.||.-..++....    ..+.+|..+|.+++|  +++|.+||+++.|..|-+|.+....+-...-.     +++|
T Consensus        81 FD~t~~Iw~k~~~efecv----~~lEGHEnEVK~Vaw--s~sG~~LATCSRDKSVWiWe~deddEfec~aV-----L~~H  149 (312)
T KOG0645|consen   81 FDATVVIWKKEDGEFECV----ATLEGHENEVKCVAW--SASGNYLATCSRDKSVWIWEIDEDDEFECIAV-----LQEH  149 (312)
T ss_pred             ccceEEEeecCCCceeEE----eeeeccccceeEEEE--cCCCCEEEEeeCCCeEEEEEecCCCcEEEEee-----eccc
Confidence            999999999876665432    346899999999999  99999999999999999999974333222222     4569


Q ss_pred             ccceEEEEeccCCCCeEEEEcCCceEEEEeCC-CCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEE
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRH-GNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLW  297 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iw  297 (401)
                      ...|..+.|+ |...+|++++.|.+|++|... ...-.+..++.+|...|.+++|+|.      +..|++++.|++++||
T Consensus       150 tqDVK~V~WH-Pt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~------G~rl~s~sdD~tv~Iw  222 (312)
T KOG0645|consen  150 TQDVKHVIWH-PTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNI------GSRLVSCSDDGTVSIW  222 (312)
T ss_pred             cccccEEEEc-CCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCC------CceEEEecCCcceEee
Confidence            9999999999 889999999999999999876 5566788999999999999999998      7999999999999999


Q ss_pred             EeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcce----EEeecCCCCeEEEEecCC-CcE
Q psy17342        298 NIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPAT----SAIVEGAPALSRVTWTPN-GTQ  372 (401)
Q Consensus       298 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~v~~~~~s~~-g~~  372 (401)
                      -..+.-    -..|...++.+.|. ++  +|++++.|+.|++|.-...-..+.+    .....|...|++++|+|. ...
T Consensus       223 ~~~~~~----~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~  295 (312)
T KOG0645|consen  223 RLYTDL----SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNR  295 (312)
T ss_pred             eeccCc----chhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCc
Confidence            866221    12367889999999 54  7999999999999987653222322    223457778999999995 688


Q ss_pred             EEEEecCCcEEEEEec
Q psy17342        373 LCVGDEKGAITMFDVG  388 (401)
Q Consensus       373 l~~~~~dg~v~iw~~~  388 (401)
                      |++|+.||.|++|.+.
T Consensus       296 L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  296 LASGGDDGIVNFWELE  311 (312)
T ss_pred             eeecCCCceEEEEEec
Confidence            9999999999999985

>KOG0295|consensus

Probab=100.00  E-value=8.8e-40  Score=261.22  Aligned_cols=291  Identities=13%  Similarity=0.149  Sum_probs=251.0

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      +|..+|+.+-|+|+-..+++++          +|++|++||..+++....+ .+|...|.+++|+..| .++++++.|=.
T Consensus       106 g~r~~vt~v~~hp~~~~v~~as----------~d~tikv~D~~tg~~e~~L-rGHt~sv~di~~~a~G-k~l~tcSsDl~  173 (406)
T KOG0295|consen  106 GHRSSVTRVIFHPSEALVVSAS----------EDATIKVFDTETGELERSL-RGHTDSVFDISFDASG-KYLATCSSDLS  173 (406)
T ss_pred             ccccceeeeeeccCceEEEEec----------CCceEEEEEccchhhhhhh-hccccceeEEEEecCc-cEEEecCCccc
Confidence            4778999999999998888888          8999999999998885444 4567789999999977 89999999988


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      +++||.++...     ......+|...|.+++|  -|.|+++++++.|.+|+.|++.++. ...  .     +.+|...|
T Consensus       174 ~~LWd~~~~~~-----c~ks~~gh~h~vS~V~f--~P~gd~ilS~srD~tik~We~~tg~-cv~--t-----~~~h~ewv  238 (406)
T KOG0295|consen  174 AKLWDFDTFFR-----CIKSLIGHEHGVSSVFF--LPLGDHILSCSRDNTIKAWECDTGY-CVK--T-----FPGHSEWV  238 (406)
T ss_pred             hhheeHHHHHH-----HHHHhcCcccceeeEEE--EecCCeeeecccccceeEEecccce-eEE--e-----ccCchHhE
Confidence            99999987421     11235789999999999  6788999999999999999998733 222  2     45588899


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCC---------CCCcEEEEEeCCCe
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHI---------DFSHLYLTSSYDWS  293 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~---------~~~~~l~s~~~d~~  293 (401)
                      ..+..+ .|+.++++++.|..+++|-....  .+...++.|+.+|.+++|.|....+         +.++++.+++.|++
T Consensus       239 r~v~v~-~DGti~As~s~dqtl~vW~~~t~--~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt  315 (406)
T KOG0295|consen  239 RMVRVN-QDGTIIASCSNDQTLRVWVVATK--QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT  315 (406)
T ss_pred             EEEEec-CCeeEEEecCCCceEEEEEeccc--hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce
Confidence            999999 99999999999999999998744  3566788999999999999864322         22469999999999


Q ss_pred             EEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEE
Q psy17342        294 VKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQL  373 (401)
Q Consensus       294 i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  373 (401)
                      |++||+.++.++.++.+|..+|..++|+|.|+ +|+++.+|+++++||+++.++...+.   .|..-++++.|+.+-.++
T Consensus       316 Ik~wdv~tg~cL~tL~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~~~~cmk~~~---ah~hfvt~lDfh~~~p~V  391 (406)
T KOG0295|consen  316 IKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGK-YILSCADDKTLRVWDLKNLQCMKTLE---AHEHFVTSLDFHKTAPYV  391 (406)
T ss_pred             EEEEeccCCeEEEEEecccceeeeeEEcCCCe-EEEEEecCCcEEEEEeccceeeeccC---CCcceeEEEecCCCCceE
Confidence            99999999999999999999999999999998 89999999999999999988776654   678889999999999999


Q ss_pred             EEEecCCcEEEEEe
Q psy17342        374 CVGDEKGAITMFDV  387 (401)
Q Consensus       374 ~~~~~dg~v~iw~~  387 (401)
                      ++|+-|.++++|.-
T Consensus       392 vTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  392 VTGSVDQTVKVWEC  405 (406)
T ss_pred             Eeccccceeeeeec
Confidence            99999999999974

>KOG0286|consensus

Probab=100.00  E-value=5.7e-40  Score=255.06  Aligned_cols=275  Identities=16%  Similarity=0.237  Sum_probs=234.9

Q ss_pred             CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCe
Q psy17342          1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL   80 (401)
Q Consensus         1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   80 (401)
                      |+|+....+|++++.||.+-|||.-..+....||-                            +...|..++|+|.|+++
T Consensus        61 ~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl----------------------------~s~WVMtCA~sPSg~~V  112 (343)
T KOG0286|consen   61 MDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL----------------------------PSSWVMTCAYSPSGNFV  112 (343)
T ss_pred             eEecCCcCeEEeeccCCeEEEEEcccccceeEEec----------------------------CceeEEEEEECCCCCeE
Confidence            89999999999999999999999766663332211                            22669999999999999


Q ss_pred             EEEEeccCCCCCCCCCcEEEEEeCcCC--C---CCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCc
Q psy17342         81 LLASYHRNKEAPNEPDGVCLIWNTKFK--K---TTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTP  155 (401)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~--~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~  155 (401)
                      |+|+          -|+...||++.+.  +   .+.+...+|.+-+.|+.|-++  ..|++++.|.+..+||+++++.. 
T Consensus       113 AcGG----------LdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~-  179 (343)
T KOG0286|consen  113 ACGG----------LDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQT-  179 (343)
T ss_pred             EecC----------cCceeEEEecccccccccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEE-
Confidence            9999          7999999999854  2   233334568999999999985  47889999999999999998865 


Q ss_pred             eeeccccccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCe
Q psy17342        156 VHRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNN  234 (401)
Q Consensus       156 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  234 (401)
                           ..+.+|.+.|.++++  +| +++.|++|+-|+..++||++.. ...+.       +.+|...|.++.|. |++.-
T Consensus       180 -----~~f~GH~gDV~slsl--~p~~~ntFvSg~cD~~aklWD~R~~-~c~qt-------F~ghesDINsv~ff-P~G~a  243 (343)
T KOG0286|consen  180 -----QVFHGHTGDVMSLSL--SPSDGNTFVSGGCDKSAKLWDVRSG-QCVQT-------FEGHESDINSVRFF-PSGDA  243 (343)
T ss_pred             -----EEecCCcccEEEEec--CCCCCCeEEecccccceeeeeccCc-ceeEe-------ecccccccceEEEc-cCCCe
Confidence                 346899999999999  66 8999999999999999999973 23332       56699999999999 89999


Q ss_pred             EEEEcCCceEEEEeCCCCCCCceeeec--CCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC
Q psy17342        235 FVVGCEDGNVYSACRHGNKAGNVECYE--GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR  312 (401)
Q Consensus       235 l~~~~~d~~i~~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  312 (401)
                      |++|++|+.+++||++...  .+..|.  .-..+|++++|+..      +++|.+|..|.++.+||.-.++.+..+.+|+
T Consensus       244 fatGSDD~tcRlyDlRaD~--~~a~ys~~~~~~gitSv~FS~S------GRlLfagy~d~~c~vWDtlk~e~vg~L~GHe  315 (343)
T KOG0286|consen  244 FATGSDDATCRLYDLRADQ--ELAVYSHDSIICGITSVAFSKS------GRLLFAGYDDFTCNVWDTLKGERVGVLAGHE  315 (343)
T ss_pred             eeecCCCceeEEEeecCCc--EEeeeccCcccCCceeEEEccc------ccEEEeeecCCceeEeeccccceEEEeeccC
Confidence            9999999999999999654  344444  33468999999998      8999999999999999999999999999999


Q ss_pred             CceEEEEECCCCCcEEEEEecCCEEEEEe
Q psy17342        313 DYVMDVQWSPINPALFATVEVAGRVDLWN  341 (401)
Q Consensus       313 ~~v~~v~~~~~~~~~l~~~~~d~~i~iwd  341 (401)
                      ..|.++..+|+|. .+++|+.|.+++||.
T Consensus       316 NRvScl~~s~DG~-av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  316 NRVSCLGVSPDGM-AVATGSWDSTLRIWA  343 (343)
T ss_pred             CeeEEEEECCCCc-EEEecchhHheeecC
Confidence            9999999999996 899999999999994

>KOG0276|consensus

Probab=100.00  E-value=1.2e-39  Score=277.74  Aligned_cols=283  Identities=20%  Similarity=0.291  Sum_probs=249.9

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQI  143 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v  143 (401)
                      +.+.|.++.|+|..+.++++-|          +|.|.||+.++...+..+... .-+|.+..|-+ .++.+++|+.|..|
T Consensus        12 rSdRVKsVd~HPtePw~la~Ly----------nG~V~IWnyetqtmVksfeV~-~~PvRa~kfia-RknWiv~GsDD~~I   79 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALY----------NGDVQIWNYETQTMVKSFEVS-EVPVRAAKFIA-RKNWIVTGSDDMQI   79 (794)
T ss_pred             cCCceeeeecCCCCceEEEeee----------cCeeEEEecccceeeeeeeec-ccchhhheeee-ccceEEEecCCceE
Confidence            5688999999999999999995          999999999988777766554 77999999998 55899999999999


Q ss_pred             EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceE
Q psy17342        144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL  223 (401)
Q Consensus       144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (401)
                      +||+.++.+..      ..+..|.+.|++++.  +|...+++++|.|-+|++||.+......+.       +.+|..-|.
T Consensus        80 rVfnynt~ekV------~~FeAH~DyIR~iav--HPt~P~vLtsSDDm~iKlW~we~~wa~~qt-------feGH~HyVM  144 (794)
T KOG0276|consen   80 RVFNYNTGEKV------KTFEAHSDYIRSIAV--HPTLPYVLTSSDDMTIKLWDWENEWACEQT-------FEGHEHYVM  144 (794)
T ss_pred             EEEecccceee------EEeeccccceeeeee--cCCCCeEEecCCccEEEEeeccCceeeeeE-------EcCcceEEE
Confidence            99999998865      446799999999999  999999999999999999999864444444       566999999


Q ss_pred             EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC
Q psy17342        224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK  303 (401)
Q Consensus       224 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  303 (401)
                      +++|+|.|.+.+++++.|++|++|.+..  ..+..++++|...|+|+.+-|...    ..+|++|+.|.+|+|||..+.+
T Consensus       145 qv~fnPkD~ntFaS~sLDrTVKVWslgs--~~~nfTl~gHekGVN~Vdyy~~gd----kpylIsgaDD~tiKvWDyQtk~  218 (794)
T KOG0276|consen  145 QVAFNPKDPNTFASASLDRTVKVWSLGS--PHPNFTLEGHEKGVNCVDYYTGGD----KPYLISGADDLTIKVWDYQTKS  218 (794)
T ss_pred             EEEecCCCccceeeeeccccEEEEEcCC--CCCceeeeccccCcceEEeccCCC----cceEEecCCCceEEEeecchHH
Confidence            9999999999999999999999999974  447889999999999999988631    4699999999999999999999


Q ss_pred             ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEE
Q psy17342        304 PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAIT  383 (401)
Q Consensus       304 ~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~  383 (401)
                      +++++.+|...|..+.|+|.-+ ++++|++||+++||+-.+-+....+.   -+-..+++++-.+.+..+++|.+.|.|.
T Consensus       219 CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE~tLn---~gleRvW~I~~~k~~~~i~vG~Deg~i~  294 (794)
T KOG0276|consen  219 CVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLEKTLN---YGLERVWCIAAHKGDGKIAVGFDEGSVT  294 (794)
T ss_pred             HHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehhhhhh---cCCceEEEEeecCCCCeEEEeccCCcEE
Confidence            9999999999999999999998 99999999999999999887766654   2356799999988888888888888653

>KOG0263|consensus

Probab=100.00  E-value=2.7e-39  Score=282.98  Aligned_cols=246  Identities=19%  Similarity=0.297  Sum_probs=216.5

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCC------------------------------CCceE
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK------------------------------TTPEF  113 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~------------------------------~~~~~  113 (401)
                      ....++|..|++++..||.|-          .|..|++|.+...+                              ...+.
T Consensus       377 t~~~v~ca~fSddssmlA~Gf----------~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~  446 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGF----------VDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT  446 (707)
T ss_pred             cCCcceeEeecCCcchhhccc----------cccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence            347899999999998776666          89999999987311                              11123


Q ss_pred             EEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcE
Q psy17342        114 EFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRL  193 (401)
Q Consensus       114 ~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i  193 (401)
                      ..+|.++|+.+.|+|+. ++|++++.|+++++|.+.+....      +.+.+|..||+++.|  +|.|-+|||+|.|++-
T Consensus       447 L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~------V~y~GH~~PVwdV~F--~P~GyYFatas~D~tA  517 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCL------VIYKGHLAPVWDVQF--APRGYYFATASHDQTA  517 (707)
T ss_pred             eecCCCceeeeeecccc-cceeeccCCcceeeeecccceeE------EEecCCCcceeeEEe--cCCceEEEecCCCcee
Confidence            46789999999999976 89999999999999999998765      456799999999999  8999999999999999


Q ss_pred             EEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecC
Q psy17342        194 CSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSH  273 (401)
Q Consensus       194 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  273 (401)
                      ++|.... ..|...       +.+|...|.|+.|+ |+..++++|+.|.+|++||..  ++..++.|.||.++|.+++|+
T Consensus       518 rLWs~d~-~~PlRi-------faghlsDV~cv~FH-PNs~Y~aTGSsD~tVRlWDv~--~G~~VRiF~GH~~~V~al~~S  586 (707)
T KOG0263|consen  518 RLWSTDH-NKPLRI-------FAGHLSDVDCVSFH-PNSNYVATGSSDRTVRLWDVS--TGNSVRIFTGHKGPVTALAFS  586 (707)
T ss_pred             eeeeccc-CCchhh-------hcccccccceEEEC-CcccccccCCCCceEEEEEcC--CCcEEEEecCCCCceEEEEEc
Confidence            9999875 223333       56699999999999 899999999999999999998  445789999999999999999


Q ss_pred             ccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342        274 RAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT  346 (401)
Q Consensus       274 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~  346 (401)
                      |.      |.+|++|+.|+.|.+||+.+++++..+.+|.+.|.++.|+.+|. +||+|+.|++|++||+....
T Consensus       587 p~------Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  587 PC------GRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             CC------CceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhc
Confidence            98      89999999999999999999999999999999999999999997 99999999999999987543

>KOG0291|consensus

Probab=100.00  E-value=1.6e-38  Score=276.20  Aligned_cols=295  Identities=19%  Similarity=0.338  Sum_probs=242.9

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIV  144 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~  144 (401)
                      ..+|..++|+..|.+|+.++         +.-|.+.||++.+...+-+ ..+|...+++++++||| +++++|+.||.|+
T Consensus       307 ~~~I~t~~~N~tGDWiA~g~---------~klgQLlVweWqsEsYVlK-QQgH~~~i~~l~YSpDg-q~iaTG~eDgKVK  375 (893)
T KOG0291|consen  307 DQKILTVSFNSTGDWIAFGC---------SKLGQLLVWEWQSESYVLK-QQGHSDRITSLAYSPDG-QLIATGAEDGKVK  375 (893)
T ss_pred             cceeeEEEecccCCEEEEcC---------CccceEEEEEeeccceeee-ccccccceeeEEECCCC-cEEEeccCCCcEE
Confidence            46788999999999999999         3568999999997655433 34578899999999988 8999999999999


Q ss_pred             EEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342        145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS  224 (401)
Q Consensus       145 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (401)
                      |||..++-+.      .++..|+..|+.+.|  +..++.+++.+.||+|+.||+... ....++..+      ......|
T Consensus       376 vWn~~SgfC~------vTFteHts~Vt~v~f--~~~g~~llssSLDGtVRAwDlkRY-rNfRTft~P------~p~Qfsc  440 (893)
T KOG0291|consen  376 VWNTQSGFCF------VTFTEHTSGVTAVQF--TARGNVLLSSSLDGTVRAWDLKRY-RNFRTFTSP------EPIQFSC  440 (893)
T ss_pred             EEeccCceEE------EEeccCCCceEEEEE--EecCCEEEEeecCCeEEeeeeccc-ceeeeecCC------CceeeeE
Confidence            9999988765      567899999999999  899999999999999999999762 233333322      3456778


Q ss_pred             EEeccCCCCeEEEEcCCce-EEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC
Q psy17342        225 LAFPQNDVNNFVVGCEDGN-VYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK  303 (401)
Q Consensus       225 ~~~~~~~~~~l~~~~~d~~-i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  303 (401)
                      ++.. |.+..+.+|+.|.. |++|+..  +++.+..+.||.+||.+++|+|.      +..|+++|.|.+||+||+-...
T Consensus       441 vavD-~sGelV~AG~~d~F~IfvWS~q--TGqllDiLsGHEgPVs~l~f~~~------~~~LaS~SWDkTVRiW~if~s~  511 (893)
T KOG0291|consen  441 VAVD-PSGELVCAGAQDSFEIFVWSVQ--TGQLLDILSGHEGPVSGLSFSPD------GSLLASGSWDKTVRIWDIFSSS  511 (893)
T ss_pred             EEEc-CCCCEEEeeccceEEEEEEEee--cCeeeehhcCCCCcceeeEEccc------cCeEEeccccceEEEEEeeccC
Confidence            9998 78999999988875 9999998  55678899999999999999999      7999999999999999996543


Q ss_pred             -ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe-----------------ecCCCCeEEEE
Q psy17342        304 -PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAI-----------------VEGAPALSRVT  365 (401)
Q Consensus       304 -~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------------~~~~~~v~~~~  365 (401)
                       .+.++. +...+..++|+|+|+ -+|+++.||.|.+||.+.+.+...+...                 ......++.++
T Consensus       512 ~~vEtl~-i~sdvl~vsfrPdG~-elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~  589 (893)
T KOG0291|consen  512 GTVETLE-IRSDVLAVSFRPDGK-ELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTIC  589 (893)
T ss_pred             ceeeeEe-eccceeEEEEcCCCC-eEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEE
Confidence             444454 477899999999998 6899999999999999876554222110                 11235789999


Q ss_pred             ecCCCcEEEEEecCCcEEEEEeccCccceeeee
Q psy17342        366 WTPNGTQLCVGDEKGAITMFDVGEVGIACLKFI  398 (401)
Q Consensus       366 ~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~  398 (401)
                      +|+||.+|++|+....|.+|++.++  -.++.+
T Consensus       590 ySaDG~~IlAgG~sn~iCiY~v~~~--vllkkf  620 (893)
T KOG0291|consen  590 YSADGKCILAGGESNSICIYDVPEG--VLLKKF  620 (893)
T ss_pred             EcCCCCEEEecCCcccEEEEECchh--heeeeE
Confidence            9999999999999999999999997  444444

>KOG0279|consensus

Probab=100.00  E-value=5.8e-39  Score=247.88  Aligned_cols=259  Identities=21%  Similarity=0.268  Sum_probs=218.3

Q ss_pred             EEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCc
Q psy17342        113 FEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR  192 (401)
Q Consensus       113 ~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~  192 (401)
                      ....|++.|+.++..+.++.++++++.|..+.+|++....... -.....+.+|...|..+..  ++++++.++++.|++
T Consensus        10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~-G~~~r~~~GHsH~v~dv~~--s~dg~~alS~swD~~   86 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKY-GVPVRRLTGHSHFVSDVVL--SSDGNFALSASWDGT   86 (315)
T ss_pred             eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcccc-CceeeeeeccceEecceEE--ccCCceEEeccccce
Confidence            3445899999999999888999999999999999997754321 1111346899999999999  999999999999999


Q ss_pred             EEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCC--CCceeee
Q psy17342        193 LCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGH--EGPVVGL  270 (401)
Q Consensus       193 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~--~~~v~~i  270 (401)
                      +++||+..+ ++  ...     +.+|...|.+++|+ ++...+++|+.|.+|.+|+..+.   +..++..+  .+.|.|+
T Consensus        87 lrlWDl~~g-~~--t~~-----f~GH~~dVlsva~s-~dn~qivSGSrDkTiklwnt~g~---ck~t~~~~~~~~WVscv  154 (315)
T KOG0279|consen   87 LRLWDLATG-ES--TRR-----FVGHTKDVLSVAFS-TDNRQIVSGSRDKTIKLWNTLGV---CKYTIHEDSHREWVSCV  154 (315)
T ss_pred             EEEEEecCC-cE--EEE-----EEecCCceEEEEec-CCCceeecCCCcceeeeeeeccc---EEEEEecCCCcCcEEEE
Confidence            999999863 22  222     45699999999999 89999999999999999998643   44444433  7889999


Q ss_pred             ecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcc
Q psy17342        271 SSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA  350 (401)
Q Consensus       271 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  350 (401)
                      .|+|+..    ..+|++++.|++|++||+++.+...++.+|.+.++.+++||||. ++++|+.||.+.+||++.++.+..
T Consensus       155 rfsP~~~----~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~lys  229 (315)
T KOG0279|consen  155 RFSPNES----NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKNLYS  229 (315)
T ss_pred             EEcCCCC----CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCceeEe
Confidence            9999842    47999999999999999999999999999999999999999997 899999999999999999887544


Q ss_pred             eEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeee
Q psy17342        351 TSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFI  398 (401)
Q Consensus       351 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~  398 (401)
                          ..+...|.+++|+|+...|+.+...+ |+|||+.++  .++..|
T Consensus       230 ----l~a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~--~~v~~l  270 (315)
T KOG0279|consen  230 ----LEAFDIVNSLCFSPNRYWLCAATATS-IKIWDLESK--AVVEEL  270 (315)
T ss_pred             ----ccCCCeEeeEEecCCceeEeeccCCc-eEEEeccch--hhhhhc
Confidence                46788999999999998887776554 999999987  444443

>KOG0319|consensus

Probab=100.00  E-value=9.9e-39  Score=276.96  Aligned_cols=354  Identities=16%  Similarity=0.178  Sum_probs=274.1

Q ss_pred             hccccccccccccccccccCCCCCCCCccc--cccccCCC-CC--------CCCCceee---ee-eeccccccccceEEE
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQD--LQFDMTGD-EK--------SSTKLSFC---RQ-FFDEKWSKNRNVTYM   71 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~--~~~~~~~~-~~--------~~~~~~~~---~~-~~~~~~~~~~~v~~~   71 (401)
                      +++++|.+.+|.+++||.+....+....+.  -.+....- ..        ..+.+-+.   .. ....-.+-++.|.+|
T Consensus       250 ~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm  329 (775)
T KOG0319|consen  250 GEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDM  329 (775)
T ss_pred             ceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheee
Confidence            578999999999999998877654222111  00110000 00        01111111   00 011222346889999


Q ss_pred             Ee-cCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC
Q psy17342         72 DW-STQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV  150 (401)
Q Consensus        72 ~~-~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~  150 (401)
                      +| .|+.++|+.++          ..+.+++|++.+..+.  +..+|...|.++....+| .+|++|+.|.++++|.+++
T Consensus       330 ~~lG~e~~~laVAT----------Ns~~lr~y~~~~~~c~--ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~  396 (775)
T KOG0319|consen  330 KFLGPEESHLAVAT----------NSPELRLYTLPTSYCQ--IIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNN  396 (775)
T ss_pred             eecCCccceEEEEe----------CCCceEEEecCCCceE--EEeCchhheeeeeecccC-cEEEEecCCceEEEEEecC
Confidence            97 56778899998          7999999988865444  666789999999944445 7999999999999999955


Q ss_pred             CCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccc-ccccCCccceEEEEecc
Q psy17342        151 QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY-NNKQTKNLAVLSLAFPQ  229 (401)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~  229 (401)
                      +......  .....+|.+.|.++++. ......|+++|.|+++++|++...........+.. .....|...|+|++++ 
T Consensus       397 ~~~~~~~--~a~~~gH~~svgava~~-~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia-  472 (775)
T KOG0319|consen  397 NCSKSLC--VAQANGHTNSVGAVAGS-KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA-  472 (775)
T ss_pred             Ccchhhh--hhhhcccccccceeeec-ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec-
Confidence            4432211  12347999999999982 33456899999999999999986222222111110 0134589999999999 


Q ss_pred             CCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEe
Q psy17342        230 NDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN  309 (401)
Q Consensus       230 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  309 (401)
                      |+..++++|+.|...++|++.  +......+.||...|.++.|+|.      .+.++|+|.|++|+||.+.+..++++|.
T Consensus       473 ~ndkLiAT~SqDktaKiW~le--~~~l~~vLsGH~RGvw~V~Fs~~------dq~laT~SgD~TvKIW~is~fSClkT~e  544 (775)
T KOG0319|consen  473 PNDKLIATGSQDKTAKIWDLE--QLRLLGVLSGHTRGVWCVSFSKN------DQLLATCSGDKTVKIWSISTFSCLKTFE  544 (775)
T ss_pred             CCCceEEecccccceeeeccc--CceEEEEeeCCccceEEEEeccc------cceeEeccCCceEEEEEeccceeeeeec
Confidence            899999999999999999998  55678899999999999999998      6899999999999999999999999999


Q ss_pred             ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        310 EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       310 ~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      +|...|..+.|-.++. .|++++.||.|++|+++++.++..+.   .|...|++++-+|.+.++++|+.||.|.+|.=.+
T Consensus       545 GH~~aVlra~F~~~~~-qliS~~adGliKlWnikt~eC~~tlD---~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  545 GHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKTNECEMTLD---AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             CccceeEeeeeeeCCc-EEEeccCCCcEEEEeccchhhhhhhh---hccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            9999999999999997 78999999999999999999888874   7899999999999999999999999999997544

>KOG0265|consensus

Probab=100.00  E-value=3.1e-38  Score=246.27  Aligned_cols=286  Identities=15%  Similarity=0.207  Sum_probs=235.5

Q ss_pred             cccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEec
Q psy17342         60 EKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTY  139 (401)
Q Consensus        60 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~  139 (401)
                      ....|++.|..+.|+|+|..||+++          .|..|.+|++.....-.-....|.+.|..+.|.+++ +.+++++.
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG----------~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~-s~i~S~gt  110 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGG----------SDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG-SHILSCGT  110 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecC----------CcceEEEEeccccccceeeeccccceeEeeeeccCC-CEEEEecC
Confidence            3446889999999999999999999          699999999763222222233689999999999987 78888889


Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      |.+|+.||.++++..      ..+++|..-|+++.-  ..- ..++.+++.|+++++||+++ ....++++        .
T Consensus       111 Dk~v~~wD~~tG~~~------rk~k~h~~~vNs~~p--~rrg~~lv~SgsdD~t~kl~D~R~-k~~~~t~~--------~  173 (338)
T KOG0265|consen  111 DKTVRGWDAETGKRI------RKHKGHTSFVNSLDP--SRRGPQLVCSGSDDGTLKLWDIRK-KEAIKTFE--------N  173 (338)
T ss_pred             CceEEEEecccceee------ehhccccceeeecCc--cccCCeEEEecCCCceEEEEeecc-cchhhccc--------c
Confidence            999999999999865      345789999998874  433 45677899999999999986 23333332        3


Q ss_pred             ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      +.+++++.|. ..+..+.+|+-|+.|++||++.+  .....+.||..+|+.+..+|.      +.++.+-+.|.++++||
T Consensus       174 kyqltAv~f~-d~s~qv~sggIdn~ikvWd~r~~--d~~~~lsGh~DtIt~lsls~~------gs~llsnsMd~tvrvwd  244 (338)
T KOG0265|consen  174 KYQLTAVGFK-DTSDQVISGGIDNDIKVWDLRKN--DGLYTLSGHADTITGLSLSRY------GSFLLSNSMDNTVRVWD  244 (338)
T ss_pred             ceeEEEEEec-ccccceeeccccCceeeeccccC--cceEEeecccCceeeEEeccC------CCccccccccceEEEEE
Confidence            4579999999 88999999999999999999844  468899999999999999999      79999999999999999


Q ss_pred             eeCC----CceEEEeecC----CceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC
Q psy17342        299 IKEN----KPVHSFNEFR----DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG  370 (401)
Q Consensus       299 ~~~~----~~~~~~~~~~----~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  370 (401)
                      ++..    +++..+.+|.    .....++|+|++. .+.+|+.|..+++||......+..+   .+|...|.+++|+|..
T Consensus       245 ~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~r~~lykl---pGh~gsvn~~~Fhp~e  320 (338)
T KOG0265|consen  245 VRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTSRRILYKL---PGHYGSVNEVDFHPTE  320 (338)
T ss_pred             ecccCCCCceEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeecccccEEEEc---CCcceeEEEeeecCCC
Confidence            9763    4466677643    2456889999997 7899999999999999876544333   4778899999999999


Q ss_pred             cEEEEEecCCcEEEEE
Q psy17342        371 TQLCVGDEKGAITMFD  386 (401)
Q Consensus       371 ~~l~~~~~dg~v~iw~  386 (401)
                      .+|.+++.|.+|++=+
T Consensus       321 ~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  321 PIILSCSSDKTIYLGE  336 (338)
T ss_pred             cEEEEeccCceeEeec
Confidence            9999999999998744

>KOG0263|consensus

Probab=100.00  E-value=2.1e-39  Score=283.66  Aligned_cols=249  Identities=20%  Similarity=0.314  Sum_probs=218.7

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCc--------ee-----------------eccccccCCCCcEEE
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTP--------VH-----------------RTPLSVMAHTHPVFC  172 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~--------~~-----------------~~~~~~~~~~~~v~~  172 (401)
                      ...++|..|++++ .++|.|..|..|++|.+...+...        ..                 .....+.+|.++|..
T Consensus       378 ~~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg  456 (707)
T KOG0263|consen  378 YQGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG  456 (707)
T ss_pred             CCcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence            5689999999987 699999999999999998422100        00                 011235799999999


Q ss_pred             EEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCC
Q psy17342        173 MSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGN  252 (401)
Q Consensus       173 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~  252 (401)
                      ..|  +|+.++|+++|+|+++++|.+.+..   ....     ..+|..+|+.+.|+ |.+-++|+++.|++-++|.... 
T Consensus       457 ~sF--sPd~rfLlScSED~svRLWsl~t~s---~~V~-----y~GH~~PVwdV~F~-P~GyYFatas~D~tArLWs~d~-  524 (707)
T KOG0263|consen  457 CSF--SPDRRFLLSCSEDSSVRLWSLDTWS---CLVI-----YKGHLAPVWDVQFA-PRGYYFATASHDQTARLWSTDH-  524 (707)
T ss_pred             eee--cccccceeeccCCcceeeeecccce---eEEE-----ecCCCcceeeEEec-CCceEEEecCCCceeeeeeccc-
Confidence            999  9999999999999999999998622   1211     45699999999999 8899999999999999999874 


Q ss_pred             CCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEe
Q psy17342        253 KAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVE  332 (401)
Q Consensus       253 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~  332 (401)
                       ..+++.+.+|.+.|.|+.|+|+      +.++++||.|.+||+||+.+|..++.|.+|.++|.+++|||+|+ +|++|+
T Consensus       525 -~~PlRifaghlsDV~cv~FHPN------s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr-~LaSg~  596 (707)
T KOG0263|consen  525 -NKPLRIFAGHLSDVDCVSFHPN------SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR-YLASGD  596 (707)
T ss_pred             -CCchhhhcccccccceEEECCc------ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc-eEeecc
Confidence             4478899999999999999999      79999999999999999999999999999999999999999998 899999


Q ss_pred             cCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        333 VAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       333 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      .||.|.+||+.++..+..+.   +|.+.|.++.||.+|..||+|+.|.+|++||+...
T Consensus       597 ed~~I~iWDl~~~~~v~~l~---~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  597 EDGLIKIWDLANGSLVKQLK---GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             cCCcEEEEEcCCCcchhhhh---cccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            99999999999998877764   67889999999999999999999999999999764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.9e-37  Score=296.96  Aligned_cols=290  Identities=18%  Similarity=0.282  Sum_probs=234.3

Q ss_pred             cccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCC----CC--CceEEEecCCCeeEEEEeCCCCceEE
Q psy17342         62 WSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK----KT--TPEFEFFCQSPVLSCCFAKFNPYLIL  135 (401)
Q Consensus        62 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~----~~--~~~~~~~~~~~v~~~~~~~~~~~~l~  135 (401)
                      ..|...|.+++|+|+++++++++          .|+.|+||+....    ..  .+.....+...+.+++|+|....+|+
T Consensus       480 ~~~~~~V~~i~fs~dg~~latgg----------~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~la  549 (793)
T PLN00181        480 LNSSNLVCAIGFDRDGEFFATAG----------VNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVA  549 (793)
T ss_pred             cCCCCcEEEEEECCCCCEEEEEe----------CCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEE
Confidence            34789999999999999999999          7999999998631    11  12233445678999999987668999


Q ss_pred             EEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCCcccccccccc
Q psy17342        136 GGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNN  214 (401)
Q Consensus       136 ~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~  214 (401)
                      +++.||.|++||+.+++..      ..+.+|.+.|++++|  ++ ++.+|++|+.||+|++||++... ....  +.   
T Consensus       550 s~~~Dg~v~lWd~~~~~~~------~~~~~H~~~V~~l~~--~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~--~~---  615 (793)
T PLN00181        550 SSNFEGVVQVWDVARSQLV------TEMKEHEKRVWSIDY--SSADPTLLASGSDDGSVKLWSINQGV-SIGT--IK---  615 (793)
T ss_pred             EEeCCCeEEEEECCCCeEE------EEecCCCCCEEEEEE--cCCCCCEEEEEcCCCEEEEEECCCCc-EEEE--Ee---
Confidence            9999999999999876543      235789999999999  65 68899999999999999997522 1111  11   


Q ss_pred             ccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeE
Q psy17342        215 KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSV  294 (401)
Q Consensus       215 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i  294 (401)
                         +...+.++.|+++++..+++|+.|+.|++||++... ..+..+.+|...|.++.|.+       +.+|++++.|++|
T Consensus       616 ---~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~-~~~~~~~~h~~~V~~v~f~~-------~~~lvs~s~D~~i  684 (793)
T PLN00181        616 ---TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK-LPLCTMIGHSKTVSYVRFVD-------SSTLVSSSTDNTL  684 (793)
T ss_pred             ---cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC-ccceEecCCCCCEEEEEEeC-------CCEEEEEECCCEE
Confidence               234789999976789999999999999999997543 24567789999999999974       5789999999999


Q ss_pred             EEEEeeC------CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEE----------eecCC
Q psy17342        295 KLWNIKE------NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSA----------IVEGA  358 (401)
Q Consensus       295 ~iwd~~~------~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------~~~~~  358 (401)
                      ++||++.      .+++..+.+|...+..++|+|+++ +|++|+.|+.|++|+.........+..          ...+.
T Consensus       685 kiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~  763 (793)
T PLN00181        685 KLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDAS  763 (793)
T ss_pred             EEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCC
Confidence            9999974      367888999999999999999997 899999999999999875533211110          01234


Q ss_pred             CCeEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342        359 PALSRVTWTPNGTQLCVGDEKGAITMFDV  387 (401)
Q Consensus       359 ~~v~~~~~s~~g~~l~~~~~dg~v~iw~~  387 (401)
                      ..|.+++|+|++..|++|+.||.|+||++
T Consensus       764 ~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        764 QFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             cEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            56999999999999999999999999996

>KOG0285|consensus

Probab=100.00  E-value=4.8e-38  Score=250.88  Aligned_cols=301  Identities=14%  Similarity=0.212  Sum_probs=254.6

Q ss_pred             CceeeeeeeccccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCC
Q psy17342         50 KLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF  129 (401)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  129 (401)
                      ..+....++.-...|.+.|.|+++.|.+.++++++          .|++++|||+.+++....+ .+|...|..+++|+.
T Consensus       136 eWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs----------~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~r  204 (460)
T KOG0285|consen  136 EWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGS----------ADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKR  204 (460)
T ss_pred             cccCcceehhhhhhccceEEEEeeCCCceeEEecC----------CCceeEEEEcccCeEEEee-cchhheeeeeeeccc
Confidence            33344445555557899999999999999999999          8999999999988765433 347889999999997


Q ss_pred             CCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccc
Q psy17342        130 NPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRD  209 (401)
Q Consensus       130 ~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~  209 (401)
                      . -++++++.|+.|+.||++..+.+      ..+.+|-..|.+++.  +|.-+.|++|+.|.++++||+++   ......
T Consensus       205 H-pYlFs~gedk~VKCwDLe~nkvI------R~YhGHlS~V~~L~l--hPTldvl~t~grDst~RvWDiRt---r~~V~~  272 (460)
T KOG0285|consen  205 H-PYLFSAGEDKQVKCWDLEYNKVI------RHYHGHLSGVYCLDL--HPTLDVLVTGGRDSTIRVWDIRT---RASVHV  272 (460)
T ss_pred             C-ceEEEecCCCeeEEEechhhhhH------HHhccccceeEEEec--cccceeEEecCCcceEEEeeecc---cceEEE
Confidence            7 47778889999999999988765      346799999999999  89999999999999999999986   223333


Q ss_pred             cccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe
Q psy17342        210 LQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS  289 (401)
Q Consensus       210 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~  289 (401)
                           +.+|..+|.++.+. +-...+++|+.|+.|++||++..+  ....+..|...|.+++.+|.      ...||+++
T Consensus       273 -----l~GH~~~V~~V~~~-~~dpqvit~S~D~tvrlWDl~agk--t~~tlt~hkksvral~lhP~------e~~fASas  338 (460)
T KOG0285|consen  273 -----LSGHTNPVASVMCQ-PTDPQVITGSHDSTVRLWDLRAGK--TMITLTHHKKSVRALCLHPK------ENLFASAS  338 (460)
T ss_pred             -----ecCCCCcceeEEee-cCCCceEEecCCceEEEeeeccCc--eeEeeecccceeeEEecCCc------hhhhhccC
Confidence                 45599999999999 667789999999999999998554  56788889999999999998      68888888


Q ss_pred             CCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe-----ecCCCCeEEE
Q psy17342        290 YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAI-----VEGAPALSRV  364 (401)
Q Consensus       290 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~  364 (401)
                      .| .|+-|++..+..+..+.+|+.-|++++.+.|+  ++++|++.|.+.+||.+++...+.....     ...+..|.+.
T Consensus       339 ~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as  415 (460)
T KOG0285|consen  339 PD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFAS  415 (460)
T ss_pred             Cc-cceeccCCccchhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEE
Confidence            65 69999999999999999999999999999998  6899999999999999998766554221     2235679999


Q ss_pred             EecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        365 TWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       365 ~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      +|...|..|++|..|.+|++|.-.+.
T Consensus       416 ~fDktg~rlit~eadKtIk~~keDe~  441 (460)
T KOG0285|consen  416 CFDKTGSRLITGEADKTIKMYKEDEH  441 (460)
T ss_pred             eecccCceEEeccCCcceEEEecccc
Confidence            99999999999999999999987654

>KOG0281|consensus

Probab=100.00  E-value=1e-38  Score=254.01  Aligned_cols=278  Identities=15%  Similarity=0.277  Sum_probs=232.3

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQI  143 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v  143 (401)
                      ....|.|+.+..  ..+++|.          .|++|+|||.++..+.. ...+|.+.|.|+.|.   .+++++|+.|.+|
T Consensus       196 ~skgVYClQYDD--~kiVSGl----------rDnTikiWD~n~~~c~~-~L~GHtGSVLCLqyd---~rviisGSSDsTv  259 (499)
T KOG0281|consen  196 NSKGVYCLQYDD--EKIVSGL----------RDNTIKIWDKNSLECLK-ILTGHTGSVLCLQYD---ERVIVSGSSDSTV  259 (499)
T ss_pred             cCCceEEEEecc--hhhhccc----------ccCceEEeccccHHHHH-hhhcCCCcEEeeecc---ceEEEecCCCceE
Confidence            447789988854  3678887          89999999998766554 446789999999994   4699999999999


Q ss_pred             EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceE
Q psy17342        144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL  223 (401)
Q Consensus       144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (401)
                      ++||+++++..      -.+..|...|..+.|    ++.++++++.|.++.+||+...........     +.+|...|.
T Consensus       260 rvWDv~tge~l------~tlihHceaVLhlrf----~ng~mvtcSkDrsiaVWdm~sps~it~rrV-----LvGHrAaVN  324 (499)
T KOG0281|consen  260 RVWDVNTGEPL------NTLIHHCEAVLHLRF----SNGYMVTCSKDRSIAVWDMASPTDITLRRV-----LVGHRAAVN  324 (499)
T ss_pred             EEEeccCCchh------hHHhhhcceeEEEEE----eCCEEEEecCCceeEEEeccCchHHHHHHH-----Hhhhhhhee
Confidence            99999999865      335789999999999    567999999999999999986331111111     566999999


Q ss_pred             EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC
Q psy17342        224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK  303 (401)
Q Consensus       224 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  303 (401)
                      .+.|+   .+++++++.|.+|++|+..  +...++++.+|...|-|+.+.        ++++++|+.|.+|++||+..|.
T Consensus       325 vVdfd---~kyIVsASgDRTikvW~~s--t~efvRtl~gHkRGIAClQYr--------~rlvVSGSSDntIRlwdi~~G~  391 (499)
T KOG0281|consen  325 VVDFD---DKYIVSASGDRTIKVWSTS--TCEFVRTLNGHKRGIACLQYR--------DRLVVSGSSDNTIRLWDIECGA  391 (499)
T ss_pred             eeccc---cceEEEecCCceEEEEecc--ceeeehhhhcccccceehhcc--------CeEEEecCCCceEEEEeccccH
Confidence            99987   4699999999999999998  556899999999999999887        7899999999999999999999


Q ss_pred             ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcc------eEEeecCCCCeEEEEecCCCcEEEEEe
Q psy17342        304 PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA------TSAIVEGAPALSRVTWTPNGTQLCVGD  377 (401)
Q Consensus       304 ~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~------~~~~~~~~~~v~~~~~s~~g~~l~~~~  377 (401)
                      ++..+++|+.-|.++.|...   -+++|++||.|++||+..+.....      +.....|.+.|..+.|  |...+++++
T Consensus       392 cLRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsss  466 (499)
T KOG0281|consen  392 CLRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSS  466 (499)
T ss_pred             HHHHHhchHHhhhheeecCc---eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEecc
Confidence            99999999999999999864   489999999999999987654321      1122356778999999  667899999


Q ss_pred             cCCcEEEEEeccC
Q psy17342        378 EKGAITMFDVGEV  390 (401)
Q Consensus       378 ~dg~v~iw~~~~~  390 (401)
                      .|.+|.|||+.++
T Consensus       467 HddtILiWdFl~~  479 (499)
T KOG0281|consen  467 HDDTILIWDFLNG  479 (499)
T ss_pred             CCCeEEEEEcCCC
Confidence            9999999999876

>KOG0291|consensus

Probab=100.00  E-value=7e-37  Score=266.11  Aligned_cols=284  Identities=16%  Similarity=0.252  Sum_probs=237.6

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEe-cCCeEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGT-YSGQIV  144 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~-~dg~v~  144 (401)
                      ..|++.+|++....|+++-          ..|...+|++..-..++..... ..+|..++|+..| ..|+.|+ .-|.+.
T Consensus       266 ~kvtaa~fH~~t~~lvvgF----------ssG~f~LyelP~f~lih~LSis-~~~I~t~~~N~tG-DWiA~g~~klgQLl  333 (893)
T KOG0291|consen  266 SKVTAAAFHKGTNLLVVGF----------SSGEFGLYELPDFNLIHSLSIS-DQKILTVSFNSTG-DWIAFGCSKLGQLL  333 (893)
T ss_pred             cceeeeeccCCceEEEEEe----------cCCeeEEEecCCceEEEEeecc-cceeeEEEecccC-CEEEEcCCccceEE
Confidence            7899999999887777776          7899999999876666555444 6789999999877 6776665 448999


Q ss_pred             EEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342        145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS  224 (401)
Q Consensus       145 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (401)
                      ||++++....      +..++|...+.++++  +|||.++++|+.||.|++||...+   .....     +..|+..|+.
T Consensus       334 VweWqsEsYV------lKQQgH~~~i~~l~Y--SpDgq~iaTG~eDgKVKvWn~~Sg---fC~vT-----FteHts~Vt~  397 (893)
T KOG0291|consen  334 VWEWQSESYV------LKQQGHSDRITSLAY--SPDGQLIATGAEDGKVKVWNTQSG---FCFVT-----FTEHTSGVTA  397 (893)
T ss_pred             EEEeecccee------eeccccccceeeEEE--CCCCcEEEeccCCCcEEEEeccCc---eEEEE-----eccCCCceEE
Confidence            9999987754      445799999999999  999999999999999999998752   22222     3449999999


Q ss_pred             EEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCC-CCceeeeecCccCCCCCCCcEEEEEeCCC-eEEEEEeeCC
Q psy17342        225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGH-EGPVVGLSSHRAQGHIDFSHLYLTSSYDW-SVKLWNIKEN  302 (401)
Q Consensus       225 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~  302 (401)
                      +.|+ ..++.+++.+.||+|+.||+.  ..+..++|... .....|++..|.      +.+++.|+.|. .|.+|++.+|
T Consensus       398 v~f~-~~g~~llssSLDGtVRAwDlk--RYrNfRTft~P~p~QfscvavD~s------GelV~AG~~d~F~IfvWS~qTG  468 (893)
T KOG0291|consen  398 VQFT-ARGNVLLSSSLDGTVRAWDLK--RYRNFRTFTSPEPIQFSCVAVDPS------GELVCAGAQDSFEIFVWSVQTG  468 (893)
T ss_pred             EEEE-ecCCEEEEeecCCeEEeeeec--ccceeeeecCCCceeeeEEEEcCC------CCEEEeeccceEEEEEEEeecC
Confidence            9999 899999999999999999997  33456666533 345678999998      78888888876 6999999999


Q ss_pred             CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC-CcceEEeecCCCCeEEEEecCCCcEEEEEecCCc
Q psy17342        303 KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE-VPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGA  381 (401)
Q Consensus       303 ~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  381 (401)
                      +.+-.+.+|+++|.+++|+|.+. +|++++.|.+|++||+-.... +.+    ......+..++|+|+|+-|++++-||.
T Consensus       469 qllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEt----l~i~sdvl~vsfrPdG~elaVaTldgq  543 (893)
T KOG0291|consen  469 QLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGTVET----LEIRSDVLAVSFRPDGKELAVATLDGQ  543 (893)
T ss_pred             eeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeeccCceeee----EeeccceeEEEEcCCCCeEEEEEecce
Confidence            99999999999999999999997 899999999999999976432 222    344667999999999999999999999


Q ss_pred             EEEEEeccCc
Q psy17342        382 ITMFDVGEVG  391 (401)
Q Consensus       382 v~iw~~~~~~  391 (401)
                      |.+||++.+.
T Consensus       544 Itf~d~~~~~  553 (893)
T KOG0291|consen  544 ITFFDIKEAV  553 (893)
T ss_pred             EEEEEhhhce
Confidence            9999998763

>KOG0277|consensus

Probab=100.00  E-value=3.5e-37  Score=234.98  Aligned_cols=294  Identities=16%  Similarity=0.241  Sum_probs=234.2

Q ss_pred             eEEEEecCCCC-CeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceE-EEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         68 VTYMDWSTQHP-ELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEF-EFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        68 v~~~~~~~~~~-~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      =.++.|||--. +|+.+.-..+..+   ..|++.|.++...+.+.+. .+.-...+..++|++...+.+++++.||++++
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~---G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl   87 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLA---GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRL   87 (311)
T ss_pred             cceeEecccccchhheeehhhcccc---cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEE
Confidence            45788999432 3444432222222   5799999999744444433 34457899999999998899999999999999


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEE
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL  225 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (401)
                      ||...... |+    ..++.|..+|.++.|. ...+..++++|.|++|++|+...   +.....     +.+|...|...
T Consensus        88 ~d~~~~s~-Pi----~~~kEH~~EV~Svdwn-~~~r~~~ltsSWD~TiKLW~~~r---~~Sv~T-----f~gh~~~Iy~a  153 (311)
T KOG0277|consen   88 FDLTMPSK-PI----HKFKEHKREVYSVDWN-TVRRRIFLTSSWDGTIKLWDPNR---PNSVQT-----FNGHNSCIYQA  153 (311)
T ss_pred             eccCCCCc-ch----hHHHhhhhheEEeccc-cccceeEEeeccCCceEeecCCC---CcceEe-----ecCCccEEEEE
Confidence            99544332 33    3468999999999994 34566788889999999999874   333322     45599999999


Q ss_pred             EeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC-CCc
Q psy17342        226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE-NKP  304 (401)
Q Consensus       226 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~  304 (401)
                      +|+|..++.+++++.|+.+++||++.. + ....+..|...|.++.|+..+     .+.++||+.|+.|++||+++ ..+
T Consensus       154 ~~sp~~~nlfas~Sgd~~l~lwdvr~~-g-k~~~i~ah~~Eil~cdw~ky~-----~~vl~Tg~vd~~vr~wDir~~r~p  226 (311)
T KOG0277|consen  154 AFSPHIPNLFASASGDGTLRLWDVRSP-G-KFMSIEAHNSEILCCDWSKYN-----HNVLATGGVDNLVRGWDIRNLRTP  226 (311)
T ss_pred             ecCCCCCCeEEEccCCceEEEEEecCC-C-ceeEEEeccceeEeecccccC-----CcEEEecCCCceEEEEehhhcccc
Confidence            999999999999999999999998854 3 334488899999999999886     78999999999999999987 578


Q ss_pred             eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC-CcEEEEEecCCcEE
Q psy17342        305 VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN-GTQLCVGDEKGAIT  383 (401)
Q Consensus       305 ~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~v~  383 (401)
                      +.++.+|.-.|..++|||....+||++++|-+++|||...+.....  ....|..-+..+.||+- +.++|+.+-|+.++
T Consensus       227 l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e--~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~  304 (311)
T KOG0277|consen  227 LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIE--TVDHHTEFVCGLDWSLFDPGQVASTGWDELLY  304 (311)
T ss_pred             ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhh--hhhccceEEeccccccccCceeeeccccccee
Confidence            9999999999999999999888999999999999999985543222  12356677888999974 78899999999999


Q ss_pred             EEEe
Q psy17342        384 MFDV  387 (401)
Q Consensus       384 iw~~  387 (401)
                      ||+.
T Consensus       305 Vw~p  308 (311)
T KOG0277|consen  305 VWNP  308 (311)
T ss_pred             eecc
Confidence            9984

>KOG0284|consensus

Probab=100.00  E-value=6.4e-39  Score=259.91  Aligned_cols=277  Identities=19%  Similarity=0.310  Sum_probs=233.9

Q ss_pred             chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeE
Q psy17342          2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELL   81 (401)
Q Consensus         2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   81 (401)
                      .|.--|.+|++|+..|...+|+-..          +.|+.                  -...|..+|.++.|++++.+++
T Consensus       103 ~WtPeGRRLltgs~SGEFtLWNg~~----------fnFEt------------------ilQaHDs~Vr~m~ws~~g~wmi  154 (464)
T KOG0284|consen  103 RWTPEGRRLLTGSQSGEFTLWNGTS----------FNFET------------------ILQAHDSPVRTMKWSHNGTWMI  154 (464)
T ss_pred             EEcCCCceeEeecccccEEEecCce----------eeHHH------------------HhhhhcccceeEEEccCCCEEE
Confidence            4666788899999999999998521          11211                  1236889999999999999999


Q ss_pred             EEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccc
Q psy17342         82 LASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPL  161 (401)
Q Consensus        82 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~  161 (401)
                      +|.          .+|.|++|+... ..+..+..+|...|++++|+|.. ..+++++.||+|+|||........      
T Consensus       155 SgD----------~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~------  216 (464)
T KOG0284|consen  155 SGD----------KGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEER------  216 (464)
T ss_pred             EcC----------CCceEEecccch-hhhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhh------
Confidence            999          899999999984 44445555667999999999954 789999999999999998766542      


Q ss_pred             cccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC
Q psy17342        162 SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED  241 (401)
Q Consensus       162 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  241 (401)
                      .+.+|.-.|.+++|  +|...++++++.|..|++||.+++...   ..     +..|+..|..+.|+ +++++|++++.|
T Consensus       217 vL~GHgwdVksvdW--HP~kgLiasgskDnlVKlWDprSg~cl---~t-----lh~HKntVl~~~f~-~n~N~Llt~skD  285 (464)
T KOG0284|consen  217 VLRGHGWDVKSVDW--HPTKGLIASGSKDNLVKLWDPRSGSCL---AT-----LHGHKNTVLAVKFN-PNGNWLLTGSKD  285 (464)
T ss_pred             eeccCCCCcceecc--CCccceeEEccCCceeEeecCCCcchh---hh-----hhhccceEEEEEEc-CCCCeeEEccCC
Confidence            24799999999999  999999999999999999999873322   22     34589999999999 788999999999


Q ss_pred             ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEe-ecCCceEEEEE
Q psy17342        242 GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN-EFRDYVMDVQW  320 (401)
Q Consensus       242 ~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~v~~  320 (401)
                      ..++++|++.  .+.+..+++|+..|+++.|+|-.     ..+|.+|+.||.|..|.+...+++..+. +|...|++++|
T Consensus       286 ~~~kv~DiR~--mkEl~~~r~Hkkdv~~~~WhP~~-----~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~  358 (464)
T KOG0284|consen  286 QSCKVFDIRT--MKELFTYRGHKKDVTSLTWHPLN-----ESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAY  358 (464)
T ss_pred             ceEEEEehhH--hHHHHHhhcchhhheeecccccc-----ccceeeccCCCceEEEeccccccccCCCcccccceeeeec
Confidence            9999999983  34588899999999999999987     7999999999999999998667766664 59999999999


Q ss_pred             CCCCCcEEEEEecCCEEEEEeCC
Q psy17342        321 SPINPALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       321 ~~~~~~~l~~~~~d~~i~iwd~~  343 (401)
                      +|-|. +|++|+.|.++++|.-.
T Consensus       359 hPlGh-il~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  359 HPLGH-ILATGSNDRTVRFWTRN  380 (464)
T ss_pred             cccce-eEeecCCCcceeeeccC
Confidence            99996 99999999999999754

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.8e-36  Score=256.32  Aligned_cols=283  Identities=22%  Similarity=0.315  Sum_probs=235.8

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      .|+.+|.+++|+|+++.|++++          .++.|++|++.+++... ....|...+..+.|+|++ .++++++.+|.
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~----------~~g~i~i~~~~~~~~~~-~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~   74 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGS----------GDGTIKVWDLETGELLR-TLKGHTGPVRDVAASADG-TYLASGSSDKT   74 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEee----------cCcEEEEEEeeCCCcEE-EEecCCcceeEEEECCCC-CEEEEEcCCCe
Confidence            4778999999999999999998          79999999998765333 333467788999999977 68888889999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      |++|++...+..      ..+..|...+.++.|  .+++.++++++.|+.+.+||++...   ....     ...|...+
T Consensus        75 i~i~~~~~~~~~------~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~-----~~~~~~~i  138 (289)
T cd00200          75 IRLWDLETGECV------RTLTGHTSYVSSVAF--SPDGRILSSSSRDKTIKVWDVETGK---CLTT-----LRGHTDWV  138 (289)
T ss_pred             EEEEEcCcccce------EEEeccCCcEEEEEE--cCCCCEEEEecCCCeEEEEECCCcE---EEEE-----eccCCCcE
Confidence            999999876433      234578889999999  7788888888889999999997421   1112     22367789


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN  302 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  302 (401)
                      .+++|+ +++.++++++.++.|++||++..  +....+..|...+.++.|+|+      ++.+++++.|+.|++||++.+
T Consensus       139 ~~~~~~-~~~~~l~~~~~~~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~~~~i~i~d~~~~  209 (289)
T cd00200         139 NSVAFS-PDGTFVASSSQDGTIKLWDLRTG--KCVATLTGHTGEVNSVAFSPD------GEKLLSSSSDGTIKLWDLSTG  209 (289)
T ss_pred             EEEEEc-CcCCEEEEEcCCCcEEEEEcccc--ccceeEecCccccceEEECCC------cCEEEEecCCCcEEEEECCCC
Confidence            999999 67888888888999999999743  356677789899999999998      678888888999999999999


Q ss_pred             CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcE
Q psy17342        303 KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAI  382 (401)
Q Consensus       303 ~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  382 (401)
                      +.+..+..|...+.+++|+|++. ++++++.|+.|++||+.+++....+.   .+...+.+++|+|++++|++++.||.|
T Consensus       210 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~i  285 (289)
T cd00200         210 KCLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGECVQTLS---GHTNSVTSLAWSPDGKRLASGSADGTI  285 (289)
T ss_pred             ceecchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCceeEEEcc---ccCCcEEEEEECCCCCEEEEecCCCeE
Confidence            98888888888999999999975 78888889999999998766544443   567789999999999999999999999


Q ss_pred             EEEE
Q psy17342        383 TMFD  386 (401)
Q Consensus       383 ~iw~  386 (401)
                      ++|+
T Consensus       286 ~iw~  289 (289)
T cd00200         286 RIWD  289 (289)
T ss_pred             EecC
Confidence            9996

>KOG0306|consensus

Probab=100.00  E-value=2.6e-36  Score=262.48  Aligned_cols=292  Identities=20%  Similarity=0.267  Sum_probs=249.9

Q ss_pred             cccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC
Q psy17342         62 WSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG  141 (401)
Q Consensus        62 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg  141 (401)
                      .+|+..|.++++|.+...+++++           .+.++||+.++.+++.++.   .+-+.+..|.| +.+++++|..+|
T Consensus       370 ~GHR~dVRsl~vS~d~~~~~Sga-----------~~SikiWn~~t~kciRTi~---~~y~l~~~Fvp-gd~~Iv~G~k~G  434 (888)
T KOG0306|consen  370 GGHRSDVRSLCVSSDSILLASGA-----------GESIKIWNRDTLKCIRTIT---CGYILASKFVP-GDRYIVLGTKNG  434 (888)
T ss_pred             ccchhheeEEEeecCceeeeecC-----------CCcEEEEEccCcceeEEec---cccEEEEEecC-CCceEEEeccCC
Confidence            46889999999999987777776           8999999999988886553   34789999999 558999999999


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCC----CccccccccccccC
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSS----PQETRDLQYNNKQT  217 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~~~~~~  217 (401)
                      .+.+||+.+....      -....|.+.|++++.  .|++..+++||.|.+|++||......    ......+...+...
T Consensus       435 el~vfdlaS~~l~------Eti~AHdgaIWsi~~--~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe  506 (888)
T KOG0306|consen  435 ELQVFDLASASLV------ETIRAHDGAIWSISL--SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE  506 (888)
T ss_pred             ceEEEEeehhhhh------hhhhccccceeeeee--cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe
Confidence            9999999887654      234689999999999  99999999999999999999853211    11222232222233


Q ss_pred             CccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEE
Q psy17342        218 KNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLW  297 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iw  297 (401)
                      -...|.|++++ ||+.+|+++--|.++.+|-+++  .+....+.||.-||.|+..+|+      +.+++|||.|.+|+||
T Consensus       507 l~ddvL~v~~S-pdgk~LaVsLLdnTVkVyflDt--lKFflsLYGHkLPV~smDIS~D------SklivTgSADKnVKiW  577 (888)
T KOG0306|consen  507 LEDDVLCVSVS-PDGKLLAVSLLDNTVKVYFLDT--LKFFLSLYGHKLPVLSMDISPD------SKLIVTGSADKNVKIW  577 (888)
T ss_pred             ccccEEEEEEc-CCCcEEEEEeccCeEEEEEecc--eeeeeeecccccceeEEeccCC------cCeEEeccCCCceEEe
Confidence            45689999999 8999999999999999998874  4456788899999999999999      7999999999999999


Q ss_pred             EeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEe
Q psy17342        298 NIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGD  377 (401)
Q Consensus       298 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  377 (401)
                      -+.-|.+.+.+-+|...|.++.|-|... +|.++|.|+.|+-||-...+.++.+   .+|...|++++.+|+|.++++++
T Consensus       578 GLdFGDCHKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~kFe~iq~L---~~H~~ev~cLav~~~G~~vvs~s  653 (888)
T KOG0306|consen  578 GLDFGDCHKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEKFEEIQKL---DGHHSEVWCLAVSPNGSFVVSSS  653 (888)
T ss_pred             ccccchhhhhhhcccCceeEEEEcccce-eEEEecCcceEEeechhhhhhheee---ccchheeeeeEEcCCCCeEEecc
Confidence            9999999999999999999999999875 8999999999999998887776665   47889999999999999999999


Q ss_pred             cCCcEEEEEecc
Q psy17342        378 EKGAITMFDVGE  389 (401)
Q Consensus       378 ~dg~v~iw~~~~  389 (401)
                      .|.+|++|....
T Consensus       654 hD~sIRlwE~td  665 (888)
T KOG0306|consen  654 HDKSIRLWERTD  665 (888)
T ss_pred             CCceeEeeeccC
Confidence            999999999765

>KOG0266|consensus

Probab=100.00  E-value=7.9e-36  Score=267.50  Aligned_cols=286  Identities=20%  Similarity=0.292  Sum_probs=240.0

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCC--CCceEEEecCCCeeEEEEeCCCCceEEEEecCC
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK--TTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG  141 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg  141 (401)
                      +...|.++.|+|+|+.+++++          .++.+++|+..+.+  ..... .+|...|.+++|+|++ .++++|+.|+
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~----------~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~-~~l~s~s~D~  225 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAAS----------SDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDG-SYLLSGSDDK  225 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEcc----------CCCcEEEeecccccchhhccc-cccccceeeeEECCCC-cEEEEecCCc
Confidence            468899999999999999888          79999999997655  33333 5688999999999987 6999999999


Q ss_pred             eEEEEECCCC-CCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        142 QIVLWDTRVQ-KKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       142 ~v~iw~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      +|+|||+... ...      ..+.+|...|++++|  ++.++++++|+.|++|++||++. +.+...       +.+|..
T Consensus       226 tiriwd~~~~~~~~------~~l~gH~~~v~~~~f--~p~g~~i~Sgs~D~tvriWd~~~-~~~~~~-------l~~hs~  289 (456)
T KOG0266|consen  226 TLRIWDLKDDGRNL------KTLKGHSTYVTSVAF--SPDGNLLVSGSDDGTVRIWDVRT-GECVRK-------LKGHSD  289 (456)
T ss_pred             eEEEeeccCCCeEE------EEecCCCCceEEEEe--cCCCCEEEEecCCCcEEEEeccC-CeEEEe-------eeccCC
Confidence            9999999433 322      345799999999999  89999999999999999999986 223222       455899


Q ss_pred             ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCc--eeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGP--VVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~--v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      .|++++|+ ++++.|++++.|+.|++||.......+...+.++..+  ++++.|+|+      +.++++++.|+.+++||
T Consensus       290 ~is~~~f~-~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~------~~~ll~~~~d~~~~~w~  362 (456)
T KOG0266|consen  290 GISGLAFS-PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPN------GKYLLSASLDRTLKLWD  362 (456)
T ss_pred             ceEEEEEC-CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCC------CcEEEEecCCCeEEEEE
Confidence            99999999 8999999999999999999985542134556665555  999999999      89999999999999999


Q ss_pred             eeCCCceEEEeecCCc---eEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecC-CCCeEEEEecCCCcEEE
Q psy17342        299 IKENKPVHSFNEFRDY---VMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG-APALSRVTWTPNGTQLC  374 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~---v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~  374 (401)
                      +..++.+..+.+|...   +.+...++.+. ++++|+.|+.|++||+.++..+..+.   +| ...+..++++|..++++
T Consensus       363 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s~~~~~~l~---~h~~~~~~~~~~~~~~~~~~  438 (456)
T KOG0266|consen  363 LRSGKSVGTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSSGGILQRLE---GHSKAAVSDLSSHPTENLIA  438 (456)
T ss_pred             ccCCcceeeecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCCccchhhhhc---CCCCCceeccccCCCcCeee
Confidence            9999999999988774   34455577776 89999999999999999877666654   55 68889999999999999


Q ss_pred             EEe--cCCcEEEEEec
Q psy17342        375 VGD--EKGAITMFDVG  388 (401)
Q Consensus       375 ~~~--~dg~v~iw~~~  388 (401)
                      +++  .|+.+++|..+
T Consensus       439 s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  439 SSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ecCcCCCceEEEecCC
Confidence            998  78999999864

>KOG0295|consensus

Probab=100.00  E-value=7e-37  Score=244.68  Aligned_cols=258  Identities=16%  Similarity=0.236  Sum_probs=227.2

Q ss_pred             EEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCc
Q psy17342        113 FEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR  192 (401)
Q Consensus       113 ~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~  192 (401)
                      ...+|..+|+.+-|+|.- .++++++.|++|++||..+++..      ..+++|...+.+++|  +..|.++++++.|-.
T Consensus       103 ~l~g~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~tg~~e------~~LrGHt~sv~di~~--~a~Gk~l~tcSsDl~  173 (406)
T KOG0295|consen  103 KLAGHRSSVTRVIFHPSE-ALVVSASEDATIKVFDTETGELE------RSLRGHTDSVFDISF--DASGKYLATCSSDLS  173 (406)
T ss_pred             hhhccccceeeeeeccCc-eEEEEecCCceEEEEEccchhhh------hhhhccccceeEEEE--ecCccEEEecCCccc
Confidence            344578899999999955 78899999999999999999874      446899999999999  889999999999999


Q ss_pred             EEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeec
Q psy17342        193 LCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSS  272 (401)
Q Consensus       193 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~  272 (401)
                      +++||.........  .     ..+|...|.+++|- |.+.++++++.|..|+.|+..  .+-++.+|.+|...|..+..
T Consensus       174 ~~LWd~~~~~~c~k--s-----~~gh~h~vS~V~f~-P~gd~ilS~srD~tik~We~~--tg~cv~t~~~h~ewvr~v~v  243 (406)
T KOG0295|consen  174 AKLWDFDTFFRCIK--S-----LIGHEHGVSSVFFL-PLGDHILSCSRDNTIKAWECD--TGYCVKTFPGHSEWVRMVRV  243 (406)
T ss_pred             hhheeHHHHHHHHH--H-----hcCcccceeeEEEE-ecCCeeeecccccceeEEecc--cceeEEeccCchHhEEEEEe
Confidence            99999975211111  1     34588999999999 778999999999999999998  44589999999999999999


Q ss_pred             CccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCC--------------CcEEEEEecCCEEE
Q psy17342        273 HRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPIN--------------PALFATVEVAGRVD  338 (401)
Q Consensus       273 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--------------~~~l~~~~~d~~i~  338 (401)
                      +.+      +.++++++.|.++++|-+.++++...+..|..+|-+++|.|..              ..++.+++.|++|+
T Consensus       244 ~~D------Gti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk  317 (406)
T KOG0295|consen  244 NQD------GTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIK  317 (406)
T ss_pred             cCC------eeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEE
Confidence            988      8999999999999999999999999999999999999998741              24899999999999


Q ss_pred             EEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeeeec
Q psy17342        339 LWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFITS  400 (401)
Q Consensus       339 iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~~~  400 (401)
                      +||+.++..+.++   .+|...|..++|+|.|+||+++.+|+++++||++++  +|++++++
T Consensus       318 ~wdv~tg~cL~tL---~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~--~cmk~~~a  374 (406)
T KOG0295|consen  318 IWDVSTGMCLFTL---VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL--QCMKTLEA  374 (406)
T ss_pred             EEeccCCeEEEEE---ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc--eeeeccCC
Confidence            9999999876555   488999999999999999999999999999999998  88888764

>KOG0285|consensus

Probab=100.00  E-value=4.8e-36  Score=239.51  Aligned_cols=244  Identities=19%  Similarity=0.288  Sum_probs=217.2

Q ss_pred             EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEE
Q psy17342        115 FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLC  194 (401)
Q Consensus       115 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~  194 (401)
                      .+|.+.|.|+++-|- ..++++|+.|++++|||+.+++..      +++.+|-..|..+++  ++...++++++.|+.|+
T Consensus       148 ~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~Lk------ltltGhi~~vr~vav--S~rHpYlFs~gedk~VK  218 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLK------LTLTGHIETVRGVAV--SKRHPYLFSAGEDKQVK  218 (460)
T ss_pred             hhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEE------Eeecchhheeeeeee--cccCceEEEecCCCeeE
Confidence            357899999999994 589999999999999999999875      556899999999999  88999999999999999


Q ss_pred             EeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCc
Q psy17342        195 SWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR  274 (401)
Q Consensus       195 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  274 (401)
                      .||++..   .....     +.+|-..|.|++.+ |.-..|++|+.|..+++||++...  .+..+.||..+|.++.+.|
T Consensus       219 CwDLe~n---kvIR~-----YhGHlS~V~~L~lh-PTldvl~t~grDst~RvWDiRtr~--~V~~l~GH~~~V~~V~~~~  287 (460)
T KOG0285|consen  219 CWDLEYN---KVIRH-----YHGHLSGVYCLDLH-PTLDVLVTGGRDSTIRVWDIRTRA--SVHVLSGHTNPVASVMCQP  287 (460)
T ss_pred             EEechhh---hhHHH-----hccccceeEEEecc-ccceeEEecCCcceEEEeeecccc--eEEEecCCCCcceeEEeec
Confidence            9999751   11111     56699999999999 788999999999999999999554  6889999999999999999


Q ss_pred             cCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe
Q psy17342        275 AQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAI  354 (401)
Q Consensus       275 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  354 (401)
                      .      ...+++|+.|++|++||++.++.+.++..|...|.+++.+|... +||+++.| .|+-|++..+..+..+   
T Consensus       288 ~------dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~-~fASas~d-nik~w~~p~g~f~~nl---  356 (460)
T KOG0285|consen  288 T------DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKEN-LFASASPD-NIKQWKLPEGEFLQNL---  356 (460)
T ss_pred             C------CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchh-hhhccCCc-cceeccCCccchhhcc---
Confidence            8      58899999999999999999999999999999999999999985 89999877 6999999998877764   


Q ss_pred             ecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        355 VEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       355 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      .+|...|++++.+.|| ++++|+++|.+.+||.+++
T Consensus       357 sgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg  391 (460)
T KOG0285|consen  357 SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSG  391 (460)
T ss_pred             ccccceeeeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence            4678889999998886 6778999999999999997

>KOG0292|consensus

Probab=100.00  E-value=1.4e-35  Score=262.23  Aligned_cols=286  Identities=18%  Similarity=0.279  Sum_probs=243.7

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIV  144 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~  144 (401)
                      ...|..++|+|..+.++++-          ..|.|++||...+..+.++. .|.++|..++|+|.. .++++|+.|-.|+
T Consensus         9 SsRvKglsFHP~rPwILtsl----------HsG~IQlWDYRM~tli~rFd-eHdGpVRgv~FH~~q-plFVSGGDDykIk   76 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSL----------HSGVIQLWDYRMGTLIDRFD-EHDGPVRGVDFHPTQ-PLFVSGGDDYKIK   76 (1202)
T ss_pred             cccccceecCCCCCEEEEee----------cCceeeeehhhhhhHHhhhh-ccCCccceeeecCCC-CeEEecCCccEEE
Confidence            36799999999999999999          69999999999888877664 579999999999976 6999999999999


Q ss_pred             EEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342        145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS  224 (401)
Q Consensus       145 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (401)
                      +|+..+.++.      .++.+|-+.|+.+.|  ++.-..++++|.|.+|++|+..+ ......       +.+|..-|.|
T Consensus        77 VWnYk~rrcl------ftL~GHlDYVRt~~F--HheyPWIlSASDDQTIrIWNwqs-r~~iav-------ltGHnHYVMc  140 (1202)
T KOG0292|consen   77 VWNYKTRRCL------FTLLGHLDYVRTVFF--HHEYPWILSASDDQTIRIWNWQS-RKCIAV-------LTGHNHYVMC  140 (1202)
T ss_pred             EEecccceeh------hhhccccceeEEeec--cCCCceEEEccCCCeEEEEeccC-CceEEE-------EecCceEEEe
Confidence            9999988765      567899999999999  99999999999999999999975 222222       4569999999


Q ss_pred             EEeccCCCCeEEEEcCCceEEEEeCCCCCCC---------------------------ceeeecCCCCceeeeecCccCC
Q psy17342        225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKAG---------------------------NVECYEGHEGPVVGLSSHRAQG  277 (401)
Q Consensus       225 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~---------------------------~~~~~~~~~~~v~~i~~~~~~~  277 (401)
                      ..|+ |....+++++.|.+|++||+.+-..+                           ....+.||...|+-++|+|.  
T Consensus       141 AqFh-ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT--  217 (1202)
T KOG0292|consen  141 AQFH-PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT--  217 (1202)
T ss_pred             eccC-CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC--
Confidence            9999 78999999999999999998642110                           12356789999999999998  


Q ss_pred             CCCCCcEEEEEeCCCeEEEEEeeCCC--ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee
Q psy17342        278 HIDFSHLYLTSSYDWSVKLWNIKENK--PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV  355 (401)
Q Consensus       278 ~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  355 (401)
                          -.+|++|+.|..|++|.+...+  .+-+..+|.+.|.++-|+|... ++++.|+|+.|++||+...+.+..++   
T Consensus       218 ----lpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kRt~v~tfr---  289 (1202)
T KOG0292|consen  218 ----LPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKRTSVQTFR---  289 (1202)
T ss_pred             ----cceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccccceeeee---
Confidence                5899999999999999997654  2445678999999999999886 89999999999999999988777765   


Q ss_pred             cCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        356 EGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       356 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      ..+...+.++-+|..+++++|.+.| +.||.++..
T Consensus       290 rendRFW~laahP~lNLfAAgHDsG-m~VFkleRE  323 (1202)
T KOG0292|consen  290 RENDRFWILAAHPELNLFAAGHDSG-MIVFKLERE  323 (1202)
T ss_pred             ccCCeEEEEEecCCcceeeeecCCc-eEEEEEccc
Confidence            3467899999999999887666555 778988743

>KOG0293|consensus

Probab=100.00  E-value=9.9e-36  Score=241.90  Aligned_cols=289  Identities=16%  Similarity=0.253  Sum_probs=234.5

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCC--CceEEEecCCCeeEEEEeCCCCceEEEEecC
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKT--TPEFEFFCQSPVLSCCFAKFNPYLILGGTYS  140 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d  140 (401)
                      .|.+.|+-+.||++|++||+++          .|.+..+|++.....  +.....+|..+|..+.||||. ++|++++.+
T Consensus       222 ~htdEVWfl~FS~nGkyLAsaS----------kD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~  290 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHNGKYLASAS----------KDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFD  290 (519)
T ss_pred             hCCCcEEEEEEcCCCeeEeecc----------CCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC-CeEEecCch
Confidence            3789999999999999999999          899999999864332  122334578999999999987 566666678


Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      ..+.+||+.++.......     .+|...+.+++|  .|++..+++|+.|+++..||++.  ......+.      ....
T Consensus       291 e~~~lwDv~tgd~~~~y~-----~~~~~S~~sc~W--~pDg~~~V~Gs~dr~i~~wdlDg--n~~~~W~g------vr~~  355 (519)
T KOG0293|consen  291 EVLSLWDVDTGDLRHLYP-----SGLGFSVSSCAW--CPDGFRFVTGSPDRTIIMWDLDG--NILGNWEG------VRDP  355 (519)
T ss_pred             HheeeccCCcchhhhhcc-----cCcCCCcceeEE--ccCCceeEecCCCCcEEEecCCc--chhhcccc------cccc
Confidence            889999999988654322     346788999999  89999999999999999999974  22222111      1335


Q ss_pred             ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEee
Q psy17342        221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIK  300 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  300 (401)
                      .|.+++.. +|++++++.+.|..|++++.......   .+.....+|++++.+.+      +.++++--.+..+.+||++
T Consensus       356 ~v~dlait-~Dgk~vl~v~~d~~i~l~~~e~~~dr---~lise~~~its~~iS~d------~k~~LvnL~~qei~LWDl~  425 (519)
T KOG0293|consen  356 KVHDLAIT-YDGKYVLLVTVDKKIRLYNREARVDR---GLISEEQPITSFSISKD------GKLALVNLQDQEIHLWDLE  425 (519)
T ss_pred             eeEEEEEc-CCCcEEEEEecccceeeechhhhhhh---ccccccCceeEEEEcCC------CcEEEEEcccCeeEEeecc
Confidence            79999999 89999999999999999998754321   12335578999999998      7888888889999999999


Q ss_pred             CCCceEEEeecCCc--eEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC-cEEEEEe
Q psy17342        301 ENKPVHSFNEFRDY--VMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG-TQLCVGD  377 (401)
Q Consensus       301 ~~~~~~~~~~~~~~--v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~  377 (401)
                      ..+.+..+.+|...  +..-+|--....++++|++|+.|+||+..+++.+..+.   +|...|++++|+|.. .++|+|+
T Consensus       426 e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls---GHs~~vNcVswNP~~p~m~ASas  502 (519)
T KOG0293|consen  426 ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS---GHSKTVNCVSWNPADPEMFASAS  502 (519)
T ss_pred             hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec---CCcceeeEEecCCCCHHHhhccC
Confidence            99999999988754  55566766555699999999999999999998877764   788999999999965 6789999


Q ss_pred             cCCcEEEEEeccC
Q psy17342        378 EKGAITMFDVGEV  390 (401)
Q Consensus       378 ~dg~v~iw~~~~~  390 (401)
                      +||+|+||.....
T Consensus       503 DDgtIRIWg~~~~  515 (519)
T KOG0293|consen  503 DDGTIRIWGPSDN  515 (519)
T ss_pred             CCCeEEEecCCcc
Confidence            9999999988654

>KOG0293|consensus

Probab=100.00  E-value=8.9e-36  Score=242.17  Aligned_cols=281  Identities=16%  Similarity=0.249  Sum_probs=229.9

Q ss_pred             hhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEE
Q psy17342          4 AEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLA   83 (401)
Q Consensus         4 ~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   83 (401)
                      +--|.++||++.|.+.-+|++..+..                     +++....    .+|..+|..+.||||.++|+++
T Consensus       233 S~nGkyLAsaSkD~Taiiw~v~~d~~---------------------~kl~~tl----vgh~~~V~yi~wSPDdryLlaC  287 (519)
T KOG0293|consen  233 SHNGKYLASASKDSTAIIWIVVYDVH---------------------FKLKKTL----VGHSQPVSYIMWSPDDRYLLAC  287 (519)
T ss_pred             cCCCeeEeeccCCceEEEEEEecCcc---------------------eeeeeee----ecccCceEEEEECCCCCeEEec
Confidence            34578999999999999999887772                     2222222    2567899999999999999999


Q ss_pred             EeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccc
Q psy17342         84 SYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSV  163 (401)
Q Consensus        84 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~  163 (401)
                      +          .+..+.+||+.++.....+..++...+.+++|.||+ ..+++|+.|+.+..||++......-.      
T Consensus       288 g----------~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~~W~------  350 (519)
T KOG0293|consen  288 G----------FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILGNWE------  350 (519)
T ss_pred             C----------chHheeeccCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchhhccc------
Confidence            9          588899999999988877766666899999999988 67889999999999999876543211      


Q ss_pred             cCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCce
Q psy17342        164 MAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGN  243 (401)
Q Consensus       164 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  243 (401)
                      ......|.+++.  .++|.++++.+.|..|++++.+.... ...        .....+|++++.+ .+++++++.-.+..
T Consensus       351 gvr~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~d-r~l--------ise~~~its~~iS-~d~k~~LvnL~~qe  418 (519)
T KOG0293|consen  351 GVRDPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVD-RGL--------ISEEQPITSFSIS-KDGKLALVNLQDQE  418 (519)
T ss_pred             ccccceeEEEEE--cCCCcEEEEEecccceeeechhhhhh-hcc--------ccccCceeEEEEc-CCCcEEEEEcccCe
Confidence            122357899999  89999999999999999999875211 111        1245689999999 99999999999999


Q ss_pred             EEEEeCCCCCCCceeeecCCCCceeee--ecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEEC
Q psy17342        244 VYSACRHGNKAGNVECYEGHEGPVVGL--SSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWS  321 (401)
Q Consensus       244 i~~~~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  321 (401)
                      +++||+.  ....+..+.||...-.-|  +|--.+     ..++++||+|+.|+||+..+++++..+.+|...|++|+|+
T Consensus       419 i~LWDl~--e~~lv~kY~Ghkq~~fiIrSCFgg~~-----~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswN  491 (519)
T KOG0293|consen  419 IHLWDLE--ENKLVRKYFGHKQGHFIIRSCFGGGN-----DKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWN  491 (519)
T ss_pred             eEEeecc--hhhHHHHhhcccccceEEEeccCCCC-----cceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecC
Confidence            9999998  445678888987643322  343322     4799999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEecCCEEEEEeCCCC
Q psy17342        322 PINPALFATVEVAGRVDLWNLNLD  345 (401)
Q Consensus       322 ~~~~~~l~~~~~d~~i~iwd~~~~  345 (401)
                      |..+.+||+++.||+|+||-....
T Consensus       492 P~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  492 PADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             CCCHHHhhccCCCCeEEEecCCcc
Confidence            999999999999999999987643

>KOG0296|consensus

Probab=100.00  E-value=1e-34  Score=232.51  Aligned_cols=286  Identities=14%  Similarity=0.198  Sum_probs=229.6

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      .|.+.|.+++.+|+.+++++|+          .|..-.||+..++.... ...+|...|+++.|+.++ .+||+|..+|.
T Consensus        62 ~H~~svFavsl~P~~~l~aTGG----------gDD~AflW~~~~ge~~~-eltgHKDSVt~~~Fshdg-tlLATGdmsG~  129 (399)
T KOG0296|consen   62 KHTDSVFAVSLHPNNNLVATGG----------GDDLAFLWDISTGEFAG-ELTGHKDSVTCCSFSHDG-TLLATGDMSGK  129 (399)
T ss_pred             hcCCceEEEEeCCCCceEEecC----------CCceEEEEEccCCccee-EecCCCCceEEEEEccCc-eEEEecCCCcc
Confidence            4789999999999888888888          89999999999888443 445689999999999987 89999999999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      |+||...++....      .+......+.=+.|  +|.+..|++|+.||.+-+|.+.... ..+.       +.+|..++
T Consensus       130 v~v~~~stg~~~~------~~~~e~~dieWl~W--Hp~a~illAG~~DGsvWmw~ip~~~-~~kv-------~~Gh~~~c  193 (399)
T KOG0296|consen  130 VLVFKVSTGGEQW------KLDQEVEDIEWLKW--HPRAHILLAGSTDGSVWMWQIPSQA-LCKV-------MSGHNSPC  193 (399)
T ss_pred             EEEEEcccCceEE------EeecccCceEEEEe--cccccEEEeecCCCcEEEEECCCcc-eeeE-------ecCCCCCc
Confidence            9999999887542      23345566777888  8999999999999999999997521 1111       56699999


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec-----------------------------------------
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE-----------------------------------------  261 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~-----------------------------------------  261 (401)
                      ++=.|. |+++.++++..||.|++|++....  ++..+.                                         
T Consensus       194 t~G~f~-pdGKr~~tgy~dgti~~Wn~ktg~--p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~  270 (399)
T KOG0296|consen  194 TCGEFI-PDGKRILTGYDDGTIIVWNPKTGQ--PLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC  270 (399)
T ss_pred             cccccc-CCCceEEEEecCceEEEEecCCCc--eeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEe
Confidence            999999 789999999999999999987432  222221                                         


Q ss_pred             ----------CCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEE
Q psy17342        262 ----------GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATV  331 (401)
Q Consensus       262 ----------~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~  331 (401)
                                .+...+.|+.+.|...  . -.+.|+|+.||+|.|||+...++.+.+. |..+|..+.|-+ .. +|+++
T Consensus       271 ~n~~~~~l~~~~e~~~esve~~~~ss--~-lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~-~l~t~  344 (399)
T KOG0296|consen  271 NNGTVPELKPSQEELDESVESIPSSS--K-LPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TD-YLLTA  344 (399)
T ss_pred             cCCCCccccccchhhhhhhhhccccc--c-cchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cc-hheee
Confidence                      1122233444444310  0 2578899999999999998877665554 688899999999 44 67888


Q ss_pred             ecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEec
Q psy17342        332 EVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       332 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~  388 (401)
                      +.+|.|++||.++++....+   .+|...|.+++.+|+++++++++.|++.+||++.
T Consensus       345 c~~g~v~~wDaRtG~l~~~y---~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  345 CANGKVRQWDARTGQLKFTY---TGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             ccCceEEeeeccccceEEEE---ecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            89999999999999877666   4888999999999999999999999999999875

>KOG0313|consensus

Probab=100.00  E-value=1.3e-34  Score=232.95  Aligned_cols=296  Identities=19%  Similarity=0.249  Sum_probs=234.6

Q ss_pred             cccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCC--ceEEEE
Q psy17342         60 EKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNP--YLILGG  137 (401)
Q Consensus        60 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~g  137 (401)
                      +.+.|.+.|.++.-.  ++.+++++|          ||.+++||.+ |+... ...+|.++|.+++|.-.++  ..++++
T Consensus       100 ~~~~hdDWVSsv~~~--~~~IltgsY----------Dg~~riWd~~-Gk~~~-~~~Ght~~ik~v~~v~~n~~~~~fvsa  165 (423)
T KOG0313|consen  100 QCFLHDDWVSSVKGA--SKWILTGSY----------DGTSRIWDLK-GKSIK-TIVGHTGPIKSVAWVIKNSSSCLFVSA  165 (423)
T ss_pred             ccccchhhhhhhccc--CceEEEeec----------CCeeEEEecC-CceEE-EEecCCcceeeeEEEecCCccceEEEe
Confidence            334588999999988  668999995          9999999998 55443 3456799999888864332  368999


Q ss_pred             ecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCC-CCcc----------
Q psy17342        138 TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLS-SPQE----------  206 (401)
Q Consensus       138 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~----------  206 (401)
                      +.|.++++|.++.++......  ....+|...|-+++.  .+++..+++|+.|.+|++|+..... ...+          
T Consensus       166 s~Dqtl~Lw~~~~~~~~~~~~--~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~  241 (423)
T KOG0313|consen  166 SMDQTLRLWKWNVGENKVKAL--KVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQ  241 (423)
T ss_pred             cCCceEEEEEecCchhhhhHH--hHhcccccceeEEEe--cCCCCeEEeecccceeeecccCCCccccccccchhhhhhh
Confidence            999999999998776532211  122599999999998  8999999999999999999932210 0000          


Q ss_pred             ------ccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCC
Q psy17342        207 ------TRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHID  280 (401)
Q Consensus       207 ------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~  280 (401)
                            ....+...+.+|..+|.++.|+ + ...+++++.|.+|+.||+....  ....+. -..++++++++|.     
T Consensus       242 ~~~~~~~~r~P~vtl~GHt~~Vs~V~w~-d-~~v~yS~SwDHTIk~WDletg~--~~~~~~-~~ksl~~i~~~~~-----  311 (423)
T KOG0313|consen  242 KREKEGGTRTPLVTLEGHTEPVSSVVWS-D-ATVIYSVSWDHTIKVWDLETGG--LKSTLT-TNKSLNCISYSPL-----  311 (423)
T ss_pred             hhhhcccccCceEEecccccceeeEEEc-C-CCceEeecccceEEEEEeeccc--ceeeee-cCcceeEeecccc-----
Confidence                  0000011256899999999998 3 7889999999999999998443  444554 4567899999998     


Q ss_pred             CCcEEEEEeCCCeEEEEEeeCCC---ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC-CCcceEEeec
Q psy17342        281 FSHLYLTSSYDWSVKLWNIKENK---PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT-EVPATSAIVE  356 (401)
Q Consensus       281 ~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~  356 (401)
                       ..+|++|+.|..+++||.+++.   ..++|.+|...|.++.|+|...++|++++.|+++++||+++.+ .+..   ..+
T Consensus       312 -~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plyd---I~~  387 (423)
T KOG0313|consen  312 -SKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYD---IAG  387 (423)
T ss_pred             -cceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCccee---ecc
Confidence             7999999999999999998753   4567889999999999999999999999999999999999876 3333   357


Q ss_pred             CCCCeEEEEecCCCcEEEEEecCCcEEEEEec
Q psy17342        357 GAPALSRVTWTPNGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       357 ~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~  388 (401)
                      |...|.++.|+ ++..|++|+.|.+|+|+.-.
T Consensus       388 h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  388 HNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             CCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence            88999999997 56689999999999998754

>KOG0645|consensus

Probab=100.00  E-value=3.2e-34  Score=220.86  Aligned_cols=277  Identities=17%  Similarity=0.146  Sum_probs=215.7

Q ss_pred             hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH   86 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   86 (401)
                      |..+||++.|..||+|+......       +                 .....-.-.|++.|.+++|+|.|++|++++  
T Consensus        27 g~ilAscg~Dk~vriw~~~~~~s-------~-----------------~ck~vld~~hkrsVRsvAwsp~g~~La~aS--   80 (312)
T KOG0645|consen   27 GVILASCGTDKAVRIWSTSSGDS-------W-----------------TCKTVLDDGHKRSVRSVAWSPHGRYLASAS--   80 (312)
T ss_pred             ceEEEeecCCceEEEEecCCCCc-------E-----------------EEEEeccccchheeeeeeecCCCcEEEEee--
Confidence            66899999999999999875321       1                 111111115889999999999999999999  


Q ss_pred             cCCCCCCCCCcEEEEEeCcCCCCCceEE-EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccC
Q psy17342         87 RNKEAPNEPDGVCLIWNTKFKKTTPEFE-FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMA  165 (401)
Q Consensus        87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~  165 (401)
                              -|.++.||.-..+.-..... -+|...|.|++|+++| ++||+++.|..|-||.+.........   ..++.
T Consensus        81 --------FD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~---aVL~~  148 (312)
T KOG0645|consen   81 --------FDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECI---AVLQE  148 (312)
T ss_pred             --------ccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEE---eeecc
Confidence                    49999999877543332222 3479999999999977 89999999999999999855432221   23589


Q ss_pred             CCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEE
Q psy17342        166 HTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVY  245 (401)
Q Consensus       166 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  245 (401)
                      |...|..+.|  +|...+|+++|.|.+|++|.-.....-.....     +.+|...|.+++|+ +.+..|++++.|+.++
T Consensus       149 HtqDVK~V~W--HPt~dlL~S~SYDnTIk~~~~~~dddW~c~~t-----l~g~~~TVW~~~F~-~~G~rl~s~sdD~tv~  220 (312)
T KOG0645|consen  149 HTQDVKHVIW--HPTEDLLFSCSYDNTIKVYRDEDDDDWECVQT-----LDGHENTVWSLAFD-NIGSRLVSCSDDGTVS  220 (312)
T ss_pred             ccccccEEEE--cCCcceeEEeccCCeEEEEeecCCCCeeEEEE-----ecCccceEEEEEec-CCCceEEEecCCcceE
Confidence            9999999999  89999999999999999998763222222222     44588899999999 8899999999999999


Q ss_pred             EEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC--Cce-----EEEeecCCceEEE
Q psy17342        246 SACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN--KPV-----HSFNEFRDYVMDV  318 (401)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~-----~~~~~~~~~v~~v  318 (401)
                      +|-....      .-..|..+++.+.|. +       ..|++++.|+.|++|.....  .+.     ..-..|...|+++
T Consensus       221 Iw~~~~~------~~~~~sr~~Y~v~W~-~-------~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV  286 (312)
T KOG0645|consen  221 IWRLYTD------LSGMHSRALYDVPWD-N-------GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV  286 (312)
T ss_pred             eeeeccC------cchhcccceEeeeec-c-------cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE
Confidence            9975411      112378899999998 3       68999999999999986542  111     1234588899999


Q ss_pred             EECCCCCcEEEEEecCCEEEEEeCC
Q psy17342        319 QWSPINPALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       319 ~~~~~~~~~l~~~~~d~~i~iwd~~  343 (401)
                      +|.|..+.+|++++.||.|++|.+.
T Consensus       287 ~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  287 QWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             EEcCCCCCceeecCCCceEEEEEec
Confidence            9999756689999999999999874

>KOG0318|consensus

Probab=100.00  E-value=9.3e-34  Score=237.20  Aligned_cols=328  Identities=16%  Similarity=0.290  Sum_probs=257.4

Q ss_pred             hhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEe
Q psy17342          6 AGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASY   85 (401)
Q Consensus         6 ~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   85 (401)
                      -|++||+|...|++||||...+..+      ++                 ..+.   .-.++|..++|++++++|++.+-
T Consensus        70 sG~yiASGD~sG~vRIWdtt~~~hi------LK-----------------nef~---v~aG~I~Di~Wd~ds~RI~avGE  123 (603)
T KOG0318|consen   70 SGFYIASGDVSGKVRIWDTTQKEHI------LK-----------------NEFQ---VLAGPIKDISWDFDSKRIAAVGE  123 (603)
T ss_pred             CceEEeecCCcCcEEEEeccCccee------ee-----------------eeee---ecccccccceeCCCCcEEEEEec
Confidence            4789999999999999998765421      11                 0000   12278999999999999999995


Q ss_pred             ccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccC
Q psy17342         86 HRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMA  165 (401)
Q Consensus        86 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~  165 (401)
                      +..      .=|.+.+||.  +..+.++ .+|...|+++.|-|..+..+++|+.|+.|.+|+-.--+      ...++..
T Consensus       124 Gre------rfg~~F~~DS--G~SvGei-~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFK------Fk~s~r~  188 (603)
T KOG0318|consen  124 GRE------RFGHVFLWDS--GNSVGEI-TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFK------FKSSFRE  188 (603)
T ss_pred             Ccc------ceeEEEEecC--CCcccee-eccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCee------eeecccc
Confidence            431      2245566665  4555555 45688999999999999999999999999999754332      2245678


Q ss_pred             CCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEE
Q psy17342        166 HTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVY  245 (401)
Q Consensus       166 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  245 (401)
                      |..-|+++.|  +|+|.+|++++.||++.+||=.++.   ...++..  ..+|++.|.+++|+ ||+..+++++.|..++
T Consensus       189 HskFV~~VRy--sPDG~~Fat~gsDgki~iyDGktge---~vg~l~~--~~aHkGsIfalsWs-PDs~~~~T~SaDkt~K  260 (603)
T KOG0318|consen  189 HSKFVNCVRY--SPDGSRFATAGSDGKIYIYDGKTGE---KVGELED--SDAHKGSIFALSWS-PDSTQFLTVSADKTIK  260 (603)
T ss_pred             cccceeeEEE--CCCCCeEEEecCCccEEEEcCCCcc---EEEEecC--CCCccccEEEEEEC-CCCceEEEecCCceEE
Confidence            9999999999  9999999999999999999976532   3333332  35699999999999 8999999999999999


Q ss_pred             EEeCCCCC-----------------------------------------CCceeeecCCCCceeeeecCccCCCCCCCcE
Q psy17342        246 SACRHGNK-----------------------------------------AGNVECYEGHEGPVVGLSSHRAQGHIDFSHL  284 (401)
Q Consensus       246 ~~~~~~~~-----------------------------------------~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~  284 (401)
                      +||....+                                         ..++..+.+|...|+++..+|+      +.+
T Consensus       261 IWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d------~~~  334 (603)
T KOG0318|consen  261 IWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD------GKT  334 (603)
T ss_pred             EEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC------CCE
Confidence            99986533                                         1233456789999999999999      799


Q ss_pred             EEEEeCCCeEEEEEeeCCC-------------------------------------------------------------
Q psy17342        285 YLTSSYDWSVKLWNIKENK-------------------------------------------------------------  303 (401)
Q Consensus       285 l~s~~~d~~i~iwd~~~~~-------------------------------------------------------------  303 (401)
                      |++|+.||.|.-||..++.                                                             
T Consensus       335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~  414 (603)
T KOG0318|consen  335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL  414 (603)
T ss_pred             EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence            9999999999999986540                                                             


Q ss_pred             ----------------------------------------------------------------ceEEEeecCCceEEEE
Q psy17342        304 ----------------------------------------------------------------PVHSFNEFRDYVMDVQ  319 (401)
Q Consensus       304 ----------------------------------------------------------------~~~~~~~~~~~v~~v~  319 (401)
                                                                                      .......|.++|++++
T Consensus       415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va  494 (603)
T KOG0318|consen  415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA  494 (603)
T ss_pred             CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE
Confidence                                                                            0011223677889999


Q ss_pred             ECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        320 WSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       320 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      +||++. +||++...+.+.+||+.+.+.  ......-|...|.+++|+|+..++|+|+-|-.|.||+++...
T Consensus       495 ySpd~~-yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~  563 (603)
T KOG0318|consen  495 YSPDGA-YLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA  563 (603)
T ss_pred             ECCCCc-EEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh
Confidence            999997 889998889999999987665  222223478899999999999999999999999999998764

>KOG0282|consensus

Probab=100.00  E-value=4.2e-36  Score=248.71  Aligned_cols=275  Identities=19%  Similarity=0.299  Sum_probs=230.0

Q ss_pred             hhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEe
Q psy17342          6 AGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASY   85 (401)
Q Consensus         6 ~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   85 (401)
                      .+..+++|+.|+.|+||++-.+....   .+|                        .+|+.+|.+++|+++|..+++++|
T Consensus       226 ~~hLlLS~gmD~~vklW~vy~~~~~l---rtf------------------------~gH~k~Vrd~~~s~~g~~fLS~sf  278 (503)
T KOG0282|consen  226 KGHLLLSGGMDGLVKLWNVYDDRRCL---RTF------------------------KGHRKPVRDASFNNCGTSFLSASF  278 (503)
T ss_pred             eeeEEEecCCCceEEEEEEecCccee---hhh------------------------hcchhhhhhhhccccCCeeeeeec
Confidence            57789999999999999987755211   111                        268899999999999999999995


Q ss_pred             ccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccC
Q psy17342         86 HRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMA  165 (401)
Q Consensus        86 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~  165 (401)
                                |+.|++||+++|++...+  +....++|+.|+|++.+.+++|..|+.|+.||+++++..      ..+..
T Consensus       279 ----------D~~lKlwDtETG~~~~~f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv------qeYd~  340 (503)
T KOG0282|consen  279 ----------DRFLKLWDTETGQVLSRF--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV------QEYDR  340 (503)
T ss_pred             ----------ceeeeeeccccceEEEEE--ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH------HHHHh
Confidence                      999999999999887655  446789999999999899999999999999999998854      23578


Q ss_pred             CCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEE
Q psy17342        166 HTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVY  245 (401)
Q Consensus       166 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  245 (401)
                      |-+.|..+.|  -+++.++++.+.|+++++|+.+..-......       ........++..+ |++..++.-+.|..|.
T Consensus       341 hLg~i~~i~F--~~~g~rFissSDdks~riWe~~~~v~ik~i~-------~~~~hsmP~~~~~-P~~~~~~aQs~dN~i~  410 (503)
T KOG0282|consen  341 HLGAILDITF--VDEGRRFISSSDDKSVRIWENRIPVPIKNIA-------DPEMHTMPCLTLH-PNGKWFAAQSMDNYIA  410 (503)
T ss_pred             hhhheeeeEE--ccCCceEeeeccCccEEEEEcCCCccchhhc-------chhhccCcceecC-CCCCeehhhccCceEE
Confidence            9999999999  8899999999999999999997522211111       1134456688888 8999999999999999


Q ss_pred             EEeCCCC-CCCceeeecCCCCc--eeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECC
Q psy17342        246 SACRHGN-KAGNVECYEGHEGP--VVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP  322 (401)
Q Consensus       246 ~~~~~~~-~~~~~~~~~~~~~~--v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  322 (401)
                      ++..... +......|++|..+  -..+.|+|+      +.+|++|+.||.+.+||.++.+.+..++.|++++..+.|+|
T Consensus       411 ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD------G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP  484 (503)
T KOG0282|consen  411 IFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD------GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHP  484 (503)
T ss_pred             EEecccccccCHhhhhcceeccCceeeEEEcCC------CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecC
Confidence            9986532 22234567788643  456789999      89999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEecCCEEEEEe
Q psy17342        323 INPALFATVEVAGRVDLWN  341 (401)
Q Consensus       323 ~~~~~l~~~~~d~~i~iwd  341 (401)
                      .....+|+++.||.|++||
T Consensus       485 ~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  485 VEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CCcceeEecccCceeEecC
Confidence            9888999999999999996

>KOG0313|consensus

Probab=100.00  E-value=6.7e-35  Score=234.59  Aligned_cols=278  Identities=17%  Similarity=0.275  Sum_probs=223.8

Q ss_pred             hhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCC---eEE
Q psy17342          6 AGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPE---LLL   82 (401)
Q Consensus         6 ~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---l~~   82 (401)
                      ..+.|+||++||.+|+||..+....                             ...+|.++|.+++|--....   +++
T Consensus       114 ~~~~IltgsYDg~~riWd~~Gk~~~-----------------------------~~~Ght~~ik~v~~v~~n~~~~~fvs  164 (423)
T KOG0313|consen  114 ASKWILTGSYDGTSRIWDLKGKSIK-----------------------------TIVGHTGPIKSVAWVIKNSSSCLFVS  164 (423)
T ss_pred             cCceEEEeecCCeeEEEecCCceEE-----------------------------EEecCCcceeeeEEEecCCccceEEE
Confidence            3678999999999999998766510                             11257788998887544444   888


Q ss_pred             EEeccCCCCCCCCCcEEEEEeCcCCCCCceEE---EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCC------
Q psy17342         83 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE---FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKK------  153 (401)
Q Consensus        83 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~------  153 (401)
                      ++          .|.++++|.++.+.......   .+|...|-++...+++ ..+++|+.|.+|.||+......      
T Consensus       165 as----------~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~  233 (423)
T KOG0313|consen  165 AS----------MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESS  233 (423)
T ss_pred             ec----------CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCcccccccc
Confidence            88          89999999998655433222   2689999999999977 7999999999999999432111      


Q ss_pred             ------------Cceeec-cccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        154 ------------TPVHRT-PLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       154 ------------~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                                  ....+. ...+.+|.++|.++.|  ++ ...+++++.|.+|+.||+.+.+......         ...
T Consensus       234 s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w--~d-~~v~yS~SwDHTIk~WDletg~~~~~~~---------~~k  301 (423)
T KOG0313|consen  234 SNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW--SD-ATVIYSVSWDHTIKVWDLETGGLKSTLT---------TNK  301 (423)
T ss_pred             chhhhhhhhhhhcccccCceEEecccccceeeEEE--cC-CCceEeecccceEEEEEeecccceeeee---------cCc
Confidence                        000111 2356899999999999  44 7789999999999999998744332221         345


Q ss_pred             ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCc-eeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGN-VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      .+.|++++ +...+|++|+.|..+++||.+...... ..+|.+|.+.|.++.|+|.+     ...|++++.|+++++||+
T Consensus       302 sl~~i~~~-~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~-----~~~~~S~S~D~t~klWDv  375 (423)
T KOG0313|consen  302 SLNCISYS-PLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTN-----EFQLVSGSYDNTVKLWDV  375 (423)
T ss_pred             ceeEeecc-cccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCC-----ceEEEEEecCCeEEEEEe
Confidence            78999999 799999999999999999999776553 45688999999999999997     789999999999999999


Q ss_pred             eCCC-ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCC
Q psy17342        300 KENK-PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       300 ~~~~-~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~  343 (401)
                      ++.+ ++..+.+|...|.++.|+..+  ++++|+.|++|+|+.-.
T Consensus       376 RS~k~plydI~~h~DKvl~vdW~~~~--~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  376 RSTKAPLYDIAGHNDKVLSVDWNEGG--LIVSGGADNKLRIFKGS  418 (423)
T ss_pred             ccCCCcceeeccCCceEEEEeccCCc--eEEeccCcceEEEeccc
Confidence            9977 999999999999999999765  69999999999998654

>KOG1407|consensus

Probab=100.00  E-value=5.2e-34  Score=218.51  Aligned_cols=279  Identities=16%  Similarity=0.185  Sum_probs=233.9

Q ss_pred             ccccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-EecCCCeeEEEEeCCCCceEEEE
Q psy17342         59 DEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-FFCQSPVLSCCFAKFNPYLILGG  137 (401)
Q Consensus        59 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~g  137 (401)
                      .+...|...|.+++|+.+|..|++++          .|+++.+|+++..+...... .+|.+.|-.++|+|..+.+++++
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs----------~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~ata   83 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGS----------FDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATA   83 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecc----------cCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEe
Confidence            33445778899999999999999999          69999999998654443333 24678999999999999999999


Q ss_pred             ecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccC
Q psy17342        138 TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT  217 (401)
Q Consensus       138 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  217 (401)
                      +.|.+|++||++..+....       ...+..-.-+.|  +|++.+++.++.|..|.+.|.++. +.....+        
T Consensus        84 s~dk~ir~wd~r~~k~~~~-------i~~~~eni~i~w--sp~g~~~~~~~kdD~it~id~r~~-~~~~~~~--------  145 (313)
T KOG1407|consen   84 SGDKTIRIWDIRSGKCTAR-------IETKGENINITW--SPDGEYIAVGNKDDRITFIDARTY-KIVNEEQ--------  145 (313)
T ss_pred             cCCceEEEEEeccCcEEEE-------eeccCcceEEEE--cCCCCEEEEecCcccEEEEEeccc-ceeehhc--------
Confidence            9999999999998875422       122233345677  899999999999999999999862 2222222        


Q ss_pred             CccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEE
Q psy17342        218 KNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLW  297 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iw  297 (401)
                      ....+.-++|+ .++.+++..+..|.|.+....  ..+++..+++|.....||.|+|.      +++||+|+.|..+.+|
T Consensus       146 ~~~e~ne~~w~-~~nd~Fflt~GlG~v~ILsyp--sLkpv~si~AH~snCicI~f~p~------GryfA~GsADAlvSLW  216 (313)
T KOG1407|consen  146 FKFEVNEISWN-NSNDLFFLTNGLGCVEILSYP--SLKPVQSIKAHPSNCICIEFDPD------GRYFATGSADALVSLW  216 (313)
T ss_pred             ccceeeeeeec-CCCCEEEEecCCceEEEEecc--ccccccccccCCcceEEEEECCC------CceEeeccccceeecc
Confidence            33467888999 788888888888999998776  55678999999999999999999      8999999999999999


Q ss_pred             EeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEe
Q psy17342        298 NIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGD  377 (401)
Q Consensus       298 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  377 (401)
                      |+..--+++.+..+.-+|..+.|+.+|+ +||++++|..|-|=++.++..+..+    ++.++...++|+|...+||-++
T Consensus       217 D~~ELiC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd~~~eI----~~~~~t~tVAWHPk~~LLAyA~  291 (313)
T KOG1407|consen  217 DVDELICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGDRVWEI----PCEGPTFTVAWHPKRPLLAYAC  291 (313)
T ss_pred             ChhHhhhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCCeEEEe----eccCCceeEEecCCCceeeEEe
Confidence            9999999999999999999999999998 8999999999999999999876654    5678889999999999999877


Q ss_pred             cC
Q psy17342        378 EK  379 (401)
Q Consensus       378 ~d  379 (401)
                      +|
T Consensus       292 dd  293 (313)
T KOG1407|consen  292 DD  293 (313)
T ss_pred             cC
Confidence            65

>KOG0292|consensus

Probab=100.00  E-value=5.8e-34  Score=252.15  Aligned_cols=325  Identities=18%  Similarity=0.249  Sum_probs=252.7

Q ss_pred             ccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEecc
Q psy17342          8 ESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHR   87 (401)
Q Consensus         8 ~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~   87 (401)
                      .-|+++=..|.|++||..-...+...                            ..|.++|..++|+|+++.+++|+   
T Consensus        22 PwILtslHsG~IQlWDYRM~tli~rF----------------------------deHdGpVRgv~FH~~qplFVSGG---   70 (1202)
T KOG0292|consen   22 PWILTSLHSGVIQLWDYRMGTLIDRF----------------------------DEHDGPVRGVDFHPTQPLFVSGG---   70 (1202)
T ss_pred             CEEEEeecCceeeeehhhhhhHHhhh----------------------------hccCCccceeeecCCCCeEEecC---
Confidence            45778888999999999877632211                            15789999999999999999999   


Q ss_pred             CCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCC
Q psy17342         88 NKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHT  167 (401)
Q Consensus        88 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  167 (401)
                             .|-.|+||++++.+++-++ .+|-.-|..+.|++.- -+++++|.|-+|+||+..+..+..+      +.+|+
T Consensus        71 -------DDykIkVWnYk~rrclftL-~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iav------ltGHn  135 (1202)
T KOG0292|consen   71 -------DDYKIKVWNYKTRRCLFTL-LGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAV------LTGHN  135 (1202)
T ss_pred             -------CccEEEEEecccceehhhh-ccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEE------EecCc
Confidence                   8999999999987777654 4678999999999965 5899999999999999999887633      57999


Q ss_pred             CcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccc--------------cc-------cccccCCccceEEEE
Q psy17342        168 HPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRD--------------LQ-------YNNKQTKNLAVLSLA  226 (401)
Q Consensus       168 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--------------~~-------~~~~~~~~~~v~~~~  226 (401)
                      ..|.|..|  +|..+.++++|.|.+|++||+..+.+......              +.       ...+.+|...|.-++
T Consensus       136 HYVMcAqF--hptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaA  213 (1202)
T KOG0292|consen  136 HYVMCAQF--HPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAA  213 (1202)
T ss_pred             eEEEeecc--CCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEE
Confidence            99999999  89999999999999999999964322111000              11       113678999999999


Q ss_pred             eccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceE
Q psy17342        227 FPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVH  306 (401)
Q Consensus       227 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  306 (401)
                      |+ |.-..|++|+.|..|++|..+..+.-.+.+..+|.+.|.++-|+|.      .+++++.|.|++|+|||+...+.++
T Consensus       214 fh-pTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~------q~lIlSnsEDksirVwDm~kRt~v~  286 (1202)
T KOG0292|consen  214 FH-PTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPH------QDLILSNSEDKSIRVWDMTKRTSVQ  286 (1202)
T ss_pred             ec-CCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCc------cceeEecCCCccEEEEeccccccee
Confidence            99 7888999999999999999886665567788899999999999998      5899999999999999999999999


Q ss_pred             EEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeC---------------------------CCCCCCcceEEeecC--
Q psy17342        307 SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNL---------------------------NLDTEVPATSAIVEG--  357 (401)
Q Consensus       307 ~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~---------------------------~~~~~~~~~~~~~~~--  357 (401)
                      +|....+..+.++-+|..+ ++++|. |+-+.+|.+                           .+.+..+.......+  
T Consensus       287 tfrrendRFW~laahP~lN-LfAAgH-DsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~  364 (1202)
T KOG0292|consen  287 TFRRENDRFWILAAHPELN-LFAAGH-DSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTL  364 (1202)
T ss_pred             eeeccCCeEEEEEecCCcc-eeeeec-CCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcc
Confidence            9988788899999999986 777665 433444444                           333322222221111  


Q ss_pred             CCCeEEEEecCCCc-EEEEEecC-CcEEEEEecc
Q psy17342        358 APALSRVTWTPNGT-QLCVGDEK-GAITMFDVGE  389 (401)
Q Consensus       358 ~~~v~~~~~s~~g~-~l~~~~~d-g~v~iw~~~~  389 (401)
                      -.++.+++++|..+ .|++...| |.--++.+..
T Consensus       365 ~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk  398 (1202)
T KOG0292|consen  365 WQPPRSLSYNPAENAVLICSNLDNGEYELVQIPK  398 (1202)
T ss_pred             cCCcceeeeccccCeEEEEeccCCCeEEEEEecC
Confidence            25678899999754 44444333 4444555544

>KOG0265|consensus

Probab=100.00  E-value=8e-34  Score=221.72  Aligned_cols=258  Identities=15%  Similarity=0.251  Sum_probs=211.2

Q ss_pred             EEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcE
Q psy17342        114 EFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRL  193 (401)
Q Consensus       114 ~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i  193 (401)
                      ..+|.+.|+.+.|+|+| .+|++|+.|..|.+|++......     ...+++|.+.|..+.|  .+++..+++++.|.++
T Consensus        43 l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdceN-----~~~lkgHsgAVM~l~~--~~d~s~i~S~gtDk~v  114 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDCEN-----FWVLKGHSGAVMELHG--MRDGSHILSCGTDKTV  114 (338)
T ss_pred             cCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccccccc-----eeeeccccceeEeeee--ccCCCEEEEecCCceE
Confidence            35689999999999977 79999999999999997654332     1345799999999999  9999999999999999


Q ss_pred             EEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecC
Q psy17342        194 CSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSH  273 (401)
Q Consensus       194 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  273 (401)
                      +.||.+++..   ..+     ..+|..-|.++.-+.....++.+++.|+++++||.+.+.  .++++. .+.+++++.|.
T Consensus       115 ~~wD~~tG~~---~rk-----~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~--~~~t~~-~kyqltAv~f~  183 (338)
T KOG0265|consen  115 RGWDAETGKR---IRK-----HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE--AIKTFE-NKYQLTAVGFK  183 (338)
T ss_pred             EEEeccccee---eeh-----hccccceeeecCccccCCeEEEecCCCceEEEEeecccc--hhhccc-cceeEEEEEec
Confidence            9999987332   222     344888888888653445667889999999999998443  455554 56788999999


Q ss_pred             ccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcc-eE
Q psy17342        274 RAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA-TS  352 (401)
Q Consensus       274 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~  352 (401)
                      ..      +..+.+|+-|+.|++||++.+.....+.+|...|+.+..+|+|. ++.+-+.|.++++||++......+ +.
T Consensus       184 d~------s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp~~p~~R~v~  256 (338)
T KOG0265|consen  184 DT------SDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRPFAPSQRCVK  256 (338)
T ss_pred             cc------ccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC-ccccccccceEEEEEecccCCCCceEE
Confidence            87      78999999999999999999999999999999999999999997 788999999999999987655444 33


Q ss_pred             EeecC----CCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeeee
Q psy17342        353 AIVEG----APALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT  399 (401)
Q Consensus       353 ~~~~~----~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~~  399 (401)
                      ...++    +.....++|+|++.++.+|+.|..+++||..+.  ..+..++
T Consensus       257 if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r--~~lyklp  305 (338)
T KOG0265|consen  257 IFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR--RILYKLP  305 (338)
T ss_pred             EeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc--cEEEEcC
Confidence            33333    234667899999999999999999999999875  3444443

>KOG0305|consensus

Probab=100.00  E-value=9.2e-34  Score=243.97  Aligned_cols=278  Identities=21%  Similarity=0.296  Sum_probs=233.8

Q ss_pred             EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECC
Q psy17342         70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTR  149 (401)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~  149 (401)
                      -++|+..+ .|+++.           ...|++|+..++.......++ ...|+++.|+++| .+|++|..+|.|.|||..
T Consensus       182 lldWss~n-~laVal-----------g~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~  247 (484)
T KOG0305|consen  182 LLDWSSAN-VLAVAL-----------GQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDG-SHLAVGTSDGTVQIWDVK  247 (484)
T ss_pred             HhhcccCC-eEEEEe-----------cceEEEEecCCCceEEeEecC-CCceEEEEECCCC-CEEEEeecCCeEEEEehh
Confidence            36788443 566555           679999999988766655555 7899999999988 899999999999999998


Q ss_pred             CCCCCceeeccccccC-CCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEec
Q psy17342        150 VQKKTPVHRTPLSVMA-HTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFP  228 (401)
Q Consensus       150 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  228 (401)
                      +......      +.+ |...|-+++|    +...+.+|+.|+.|..+|++.......  .     ..+|...|..+.|+
T Consensus       248 ~~k~~~~------~~~~h~~rvg~laW----~~~~lssGsr~~~I~~~dvR~~~~~~~--~-----~~~H~qeVCgLkws  310 (484)
T KOG0305|consen  248 EQKKTRT------LRGSHASRVGSLAW----NSSVLSSGSRDGKILNHDVRISQHVVS--T-----LQGHRQEVCGLKWS  310 (484)
T ss_pred             hcccccc------ccCCcCceeEEEec----cCceEEEecCCCcEEEEEEecchhhhh--h-----hhcccceeeeeEEC
Confidence            8765532      345 9999999999    477899999999999999986332222  1     35599999999999


Q ss_pred             cCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC--CCeEEEEEeeCCCceE
Q psy17342        229 QNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY--DWSVKLWNIKENKPVH  306 (401)
Q Consensus       229 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~  306 (401)
                       +++.++++|+.|+.+.+||..  ...+...+..|...|..++|+|..     ..+||+|+.  |+.|++||..+++.+.
T Consensus       311 -~d~~~lASGgnDN~~~Iwd~~--~~~p~~~~~~H~aAVKA~awcP~q-----~~lLAsGGGs~D~~i~fwn~~~g~~i~  382 (484)
T KOG0305|consen  311 -PDGNQLASGGNDNVVFIWDGL--SPEPKFTFTEHTAAVKALAWCPWQ-----SGLLATGGGSADRCIKFWNTNTGARID  382 (484)
T ss_pred             -CCCCeeccCCCccceEeccCC--CccccEEEeccceeeeEeeeCCCc-----cCceEEcCCCcccEEEEEEcCCCcEec
Confidence             999999999999999999995  444678888999999999999997     789999865  9999999999999999


Q ss_pred             EEeecCCceEEEEECCCCCcEEEEE-ecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEE
Q psy17342        307 SFNEFRDYVMDVQWSPINPALFATV-EVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMF  385 (401)
Q Consensus       307 ~~~~~~~~v~~v~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw  385 (401)
                      .+.. ...|..+.|++..+.++.+. -.++.|.||+..+.+.+..+   .+|...|..++++|||..+++|+.|.++++|
T Consensus       383 ~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l---~gH~~RVl~la~SPdg~~i~t~a~DETlrfw  458 (484)
T KOG0305|consen  383 SVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL---LGHTSRVLYLALSPDGETIVTGAADETLRFW  458 (484)
T ss_pred             cccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee---cCCcceeEEEEECCCCCEEEEecccCcEEec
Confidence            8887 67899999999987555553 35678999999986655444   5889999999999999999999999999999


Q ss_pred             EeccC
Q psy17342        386 DVGEV  390 (401)
Q Consensus       386 ~~~~~  390 (401)
                      ++-+.
T Consensus       459 ~~f~~  463 (484)
T KOG0305|consen  459 NLFDE  463 (484)
T ss_pred             cccCC
Confidence            99774

>KOG0281|consensus

Probab=100.00  E-value=1.3e-35  Score=236.36  Aligned_cols=234  Identities=17%  Similarity=0.276  Sum_probs=202.6

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS  197 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd  197 (401)
                      ...|+|+.+.   ...+++|..|++|+|||.++....      ..+.+|++.|.|+.|    +...+++|+.|.+|++||
T Consensus       197 skgVYClQYD---D~kiVSGlrDnTikiWD~n~~~c~------~~L~GHtGSVLCLqy----d~rviisGSSDsTvrvWD  263 (499)
T KOG0281|consen  197 SKGVYCLQYD---DEKIVSGLRDNTIKIWDKNSLECL------KILTGHTGSVLCLQY----DERVIVSGSSDSTVRVWD  263 (499)
T ss_pred             CCceEEEEec---chhhhcccccCceEEeccccHHHH------HhhhcCCCcEEeeec----cceEEEecCCCceEEEEe
Confidence            5689999994   367999999999999999887654      346799999999999    677999999999999999


Q ss_pred             ccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCC-CceeeecCCCCceeeeecCccC
Q psy17342        198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKA-GNVECYEGHEGPVVGLSSHRAQ  276 (401)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~  276 (401)
                      .+++ ++..+       +.+|...|..+.|+   ..++++++.|..+.+||+..... .+.+.+.||...|+.+.|+   
T Consensus       264 v~tg-e~l~t-------lihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---  329 (499)
T KOG0281|consen  264 VNTG-EPLNT-------LIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---  329 (499)
T ss_pred             ccCC-chhhH-------HhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---
Confidence            9873 33333       34588999999988   68999999999999999976442 2345678999999999998   


Q ss_pred             CCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeec
Q psy17342        277 GHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVE  356 (401)
Q Consensus       277 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  356 (401)
                           .+++++++.|.+|++|++.+++.+.++.+|...|.|+++.  ++ ++++|+.|.+|++||+..+..+..+.   +
T Consensus       330 -----~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~r-lvVSGSSDntIRlwdi~~G~cLRvLe---G  398 (499)
T KOG0281|consen  330 -----DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIECGACLRVLE---G  398 (499)
T ss_pred             -----cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--Ce-EEEecCCCceEEEEeccccHHHHHHh---c
Confidence                 5799999999999999999999999999999999888765  44 89999999999999999999887764   7


Q ss_pred             CCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        357 GAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       357 ~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      |+.-|.++.|  |.+.+++|+.||+|+|||+..+.
T Consensus       399 HEeLvRciRF--d~krIVSGaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  399 HEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAAL  431 (499)
T ss_pred             hHHhhhheee--cCceeeeccccceEEEEeccccc
Confidence            8889999999  67789999999999999998864

>KOG0264|consensus

Probab=100.00  E-value=5e-34  Score=234.94  Aligned_cols=269  Identities=21%  Similarity=0.328  Sum_probs=221.1

Q ss_pred             EEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCce----eeccccccCCCCcEEEEEEeecCCceEEEEEeC
Q psy17342        114 EFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPV----HRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN  189 (401)
Q Consensus       114 ~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~  189 (401)
                      .+.|.+.|+.+.+.|+++.++++++..+.|.|||.......+.    .+..+.+.+|...-++++|. ......+++++.
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn-~~~~g~Lls~~~  198 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWN-RQQEGTLLSGSD  198 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccc-cccceeEeeccC
Confidence            3558899999999999999999999999999999976544332    12234678999988999995 234558999999


Q ss_pred             CCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceee
Q psy17342        190 DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVG  269 (401)
Q Consensus       190 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~  269 (401)
                      |++|++||+.......... .....+.+|...|..++|++.+...|++++.|+.+.+||.+..+.++.....+|.++|+|
T Consensus       199 d~~i~lwdi~~~~~~~~~~-~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~  277 (422)
T KOG0264|consen  199 DHTICLWDINAESKEDKVV-DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC  277 (422)
T ss_pred             CCcEEEEeccccccCCccc-cceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence            9999999998644321111 111125679999999999988999999999999999999996555567788899999999


Q ss_pred             eecCccCCCCCCCcEEEEEeCCCeEEEEEeeC-CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCC
Q psy17342        270 LSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE-NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV  348 (401)
Q Consensus       270 i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  348 (401)
                      ++|+|..     +.+|||||.|++|++||+|+ .+++.++.+|...|.+|.|+|....+||+++.|+.+.+||+..-...
T Consensus       278 ~~fnp~~-----~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e  352 (422)
T KOG0264|consen  278 VAFNPFN-----EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE  352 (422)
T ss_pred             EEeCCCC-----CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence            9999987     78999999999999999998 56889999999999999999999899999999999999999753322


Q ss_pred             c-----------ceEEeecCCCCeEEEEecCCCcE-EEEEecCCcEEEEEecc
Q psy17342        349 P-----------ATSAIVEGAPALSRVTWTPNGTQ-LCVGDEKGAITMFDVGE  389 (401)
Q Consensus       349 ~-----------~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~dg~v~iw~~~~  389 (401)
                      +           .+-..-+|...|..+.|+|+..+ |++.+.|+.+.||++..
T Consensus       353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            2           12234567788999999999765 57789999999999874

>KOG0647|consensus

Probab=100.00  E-value=2.9e-33  Score=218.76  Aligned_cols=274  Identities=19%  Similarity=0.256  Sum_probs=218.7

Q ss_pred             ccccceEEEEecCCCCCeE-EEEeccCCCCCCCCCcEEEEEeCcC-CCCCceEEEecCCCeeEEEEeCCCCceEEEEecC
Q psy17342         63 SKNRNVTYMDWSTQHPELL-LASYHRNKEAPNEPDGVCLIWNTKF-KKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS  140 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~-~~~~~~~~~~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d  140 (401)
                      ..++.|.+++|||....++ +++          -|++|++|+++. +...++....|.++|.+++|+.+| ..+++|+.|
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~S----------WD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~D   93 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGS----------WDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCD   93 (347)
T ss_pred             CcccchheeEeccccCceEEecc----------cCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-ceEEeeccC
Confidence            3558899999999555555 566          599999999986 577777777789999999999988 788889999


Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      +.+++||+.+++..       .+..|.++|..+.|........|++||.|.+|++||.+. ..+...+.++.        
T Consensus        94 k~~k~wDL~S~Q~~-------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~-~~pv~t~~LPe--------  157 (347)
T KOG0647|consen   94 KQAKLWDLASGQVS-------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS-SNPVATLQLPE--------  157 (347)
T ss_pred             CceEEEEccCCCee-------eeeecccceeEEEEecCCCcceeEecccccceeecccCC-CCeeeeeeccc--------
Confidence            99999999998753       347899999999997666667999999999999999986 44555555544        


Q ss_pred             ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEee
Q psy17342        221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIK  300 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  300 (401)
                      .++++..-   ...+++++.+..|.+|++++...+.......-.-.++||+..++      .+.++.|+-+|++.|..+.
T Consensus       158 RvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d------~~~~alGsiEGrv~iq~id  228 (347)
T KOG0647|consen  158 RVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQD------KDGFALGSIEGRVAIQYID  228 (347)
T ss_pred             eeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEec------CCceEeeeecceEEEEecC
Confidence            67777654   56889999999999999976543222222223345789999888      5667999999999999998


Q ss_pred             CC--CceEEEeecCC---------ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC
Q psy17342        301 EN--KPVHSFNEFRD---------YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN  369 (401)
Q Consensus       301 ~~--~~~~~~~~~~~---------~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  369 (401)
                      .+  +.-.+|+.|..         .|++|+|+|... .|++++.||++.+||-.....+...   ..+..+|++.+|+.+
T Consensus       229 ~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~kLk~s---~~~~qpItcc~fn~~  304 (347)
T KOG0647|consen  229 DPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDARTKLKTS---ETHPQPITCCSFNRN  304 (347)
T ss_pred             CCCccCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhhhhhhcc---CcCCCccceeEecCC
Confidence            76  55566777763         578899999876 7899999999999998876655443   367889999999999


Q ss_pred             CcEEEEE
Q psy17342        370 GTQLCVG  376 (401)
Q Consensus       370 g~~l~~~  376 (401)
                      |.++|-+
T Consensus       305 G~ifaYA  311 (347)
T KOG0647|consen  305 GSIFAYA  311 (347)
T ss_pred             CCEEEEE
Confidence            9988755

>KOG0316|consensus

Probab=100.00  E-value=2.1e-33  Score=212.14  Aligned_cols=282  Identities=16%  Similarity=0.184  Sum_probs=226.9

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      .++++|..+.|+-+|++.++++          .|.+|++|+...+..+.++. +|...|..++.+.|+ ..+++|+.|..
T Consensus        15 ~~qgaV~avryN~dGnY~ltcG----------sdrtvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dn-skf~s~GgDk~   82 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDGNYCLTCG----------SDRTVRLWNPLRGALIKTYS-GHGHEVLDAALSSDN-SKFASCGGDKA   82 (307)
T ss_pred             ccccceEEEEEccCCCEEEEcC----------CCceEEeecccccceeeeec-CCCceeeeccccccc-cccccCCCCce
Confidence            3568999999999999999999          89999999999888776664 457899999999877 67888889999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      +.+||+++++..      ..+.+|.+.|+.++|  +.+...+++|+.|.++++||.+... ......     +......|
T Consensus        83 v~vwDV~TGkv~------Rr~rgH~aqVNtV~f--NeesSVv~SgsfD~s~r~wDCRS~s-~ePiQi-----ldea~D~V  148 (307)
T KOG0316|consen   83 VQVWDVNTGKVD------RRFRGHLAQVNTVRF--NEESSVVASGSFDSSVRLWDCRSRS-FEPIQI-----LDEAKDGV  148 (307)
T ss_pred             EEEEEcccCeee------eecccccceeeEEEe--cCcceEEEeccccceeEEEEcccCC-CCccch-----hhhhcCce
Confidence            999999999865      346899999999999  8899999999999999999998522 222211     22256689


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN  302 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  302 (401)
                      .++...   +..|+.|+.||.++.||++..+  ....+.  ..||++++|+++      ++..+.++.|+++++.|-.+|
T Consensus       149 ~Si~v~---~heIvaGS~DGtvRtydiR~G~--l~sDy~--g~pit~vs~s~d------~nc~La~~l~stlrLlDk~tG  215 (307)
T KOG0316|consen  149 SSIDVA---EHEIVAGSVDGTVRTYDIRKGT--LSSDYF--GHPITSVSFSKD------GNCSLASSLDSTLRLLDKETG  215 (307)
T ss_pred             eEEEec---ccEEEeeccCCcEEEEEeecce--eehhhc--CCcceeEEecCC------CCEEEEeeccceeeecccchh
Confidence            999876   6789999999999999998443  333343  458999999999      789999999999999999999


Q ss_pred             CceEEEeecCCceE--EEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCC
Q psy17342        303 KPVHSFNEFRDYVM--DVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG  380 (401)
Q Consensus       303 ~~~~~~~~~~~~v~--~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  380 (401)
                      +.+..+++|...-.  .++++.... .+++|++||.+.+||+.....+..+.  ....-.+.+++++|.-..++++...+
T Consensus       216 klL~sYkGhkn~eykldc~l~qsdt-hV~sgSEDG~Vy~wdLvd~~~~sk~~--~~~~v~v~dl~~hp~~~~f~~A~~~~  292 (307)
T KOG0316|consen  216 KLLKSYKGHKNMEYKLDCCLNQSDT-HVFSGSEDGKVYFWDLVDETQISKLS--VVSTVIVTDLSCHPTMDDFITATGHG  292 (307)
T ss_pred             HHHHHhcccccceeeeeeeecccce-eEEeccCCceEEEEEeccceeeeeec--cCCceeEEeeecccCccceeEecCCc
Confidence            99999999876543  455555554 78999999999999999877655443  22223388999999987777776554


Q ss_pred             cEEEEEe
Q psy17342        381 AITMFDV  387 (401)
Q Consensus       381 ~v~iw~~  387 (401)
                       +..|.-
T Consensus       293 -~~~~~~  298 (307)
T KOG0316|consen  293 -DLFWYQ  298 (307)
T ss_pred             -eeceee
Confidence             666654

>KOG0277|consensus

Probab=100.00  E-value=3.1e-34  Score=218.93  Aligned_cols=247  Identities=18%  Similarity=0.329  Sum_probs=206.7

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-EecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-FFCQSPVLSCCFAKFNPYLILGGTYSGQI  143 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~dg~v  143 (401)
                      .+.+..++|+++....+.++         +.||+++|||+.. ...|... .+|...|.++.|++...+.+++++.|++|
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a---------~GDGSLrl~d~~~-~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~Ti  129 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAA---------SGDGSLRLFDLTM-PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTI  129 (311)
T ss_pred             ccceeEeeecCCCcceEEEE---------ecCceEEEeccCC-CCcchhHHHhhhhheEEeccccccceeEEeeccCCce
Confidence            48899999999877655554         2799999999653 3333333 34789999999999887888888999999


Q ss_pred             EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceE
Q psy17342        144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL  223 (401)
Q Consensus       144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (401)
                      ++|+...++..      .++.+|..-|....|. ....+.++++|.|+++++||++..++...   +..     |...+.
T Consensus       130 KLW~~~r~~Sv------~Tf~gh~~~Iy~a~~s-p~~~nlfas~Sgd~~l~lwdvr~~gk~~~---i~a-----h~~Eil  194 (311)
T KOG0277|consen  130 KLWDPNRPNSV------QTFNGHNSCIYQAAFS-PHIPNLFASASGDGTLRLWDVRSPGKFMS---IEA-----HNSEIL  194 (311)
T ss_pred             EeecCCCCcce------EeecCCccEEEEEecC-CCCCCeEEEccCCceEEEEEecCCCceeE---EEe-----ccceeE
Confidence            99999877654      4578999999999994 23577999999999999999987543332   333     778999


Q ss_pred             EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC-C
Q psy17342        224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE-N  302 (401)
Q Consensus       224 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~  302 (401)
                      |+.|+.-+.+.+++|+.|+.|+.||++..+. ++..+.+|.-.|..+.|+|..     ..+|++++.|-++||||... .
T Consensus       195 ~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-pl~eL~gh~~AVRkvk~Sph~-----~~lLaSasYDmT~riw~~~~~d  268 (311)
T KOG0277|consen  195 CCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-PLFELNGHGLAVRKVKFSPHH-----ASLLASASYDMTVRIWDPERQD  268 (311)
T ss_pred             eecccccCCcEEEecCCCceEEEEehhhccc-cceeecCCceEEEEEecCcch-----hhHhhhccccceEEecccccch
Confidence            9999988899999999999999999987554 577889999999999999987     78999999999999999974 4


Q ss_pred             CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeC
Q psy17342        303 KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNL  342 (401)
Q Consensus       303 ~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~  342 (401)
                      ..+.+...|..-+..+.|++..+.++|+++.|+.++||+.
T Consensus       269 s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  269 SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            4566677899999999999988789999999999999984

>KOG0316|consensus

Probab=100.00  E-value=2.9e-33  Score=211.34  Aligned_cols=247  Identities=13%  Similarity=0.138  Sum_probs=211.3

Q ss_pred             EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEE
Q psy17342        115 FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLC  194 (401)
Q Consensus       115 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~  194 (401)
                      -.++++|.++.|+-+| ++.++++.|.+|++|+...+...      .++.+|..+|..++.  +.++..|++|+.|..+.
T Consensus        14 ~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg~li------ktYsghG~EVlD~~~--s~Dnskf~s~GgDk~v~   84 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRGALI------KTYSGHGHEVLDAAL--SSDNSKFASCGGDKAVQ   84 (307)
T ss_pred             cccccceEEEEEccCC-CEEEEcCCCceEEeeccccccee------eeecCCCceeeeccc--cccccccccCCCCceEE
Confidence            3468999999999988 67777778999999999888765      346799999999998  88999999999999999


Q ss_pred             EeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCc
Q psy17342        195 SWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR  274 (401)
Q Consensus       195 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  274 (401)
                      +||+.++..   ..+     +.+|...|..+.|+ .+...+++|+.|..+++||.+....++++.+......|.++... 
T Consensus        85 vwDV~TGkv---~Rr-----~rgH~aqVNtV~fN-eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~-  154 (307)
T KOG0316|consen   85 VWDVNTGKV---DRR-----FRGHLAQVNTVRFN-EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA-  154 (307)
T ss_pred             EEEcccCee---eee-----cccccceeeEEEec-CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec-
Confidence            999987432   222     45699999999999 89999999999999999999999999999999889999999987 


Q ss_pred             cCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe
Q psy17342        275 AQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAI  354 (401)
Q Consensus       275 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  354 (401)
                             +..+++|+.||++|.||++.|+.....-+  .+|++++|+++++ ...+++.|+++++.|-.+++.+..+...
T Consensus       155 -------~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~n-c~La~~l~stlrLlDk~tGklL~sYkGh  224 (307)
T KOG0316|consen  155 -------EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGN-CSLASSLDSTLRLLDKETGKLLKSYKGH  224 (307)
T ss_pred             -------ccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCC-EEEEeeccceeeecccchhHHHHHhccc
Confidence                   57899999999999999999987666554  5899999999997 6777889999999999999988877532


Q ss_pred             ecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        355 VEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       355 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      .. ...-...+++.....+++|++||.|++||+.+..
T Consensus       225 kn-~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~  260 (307)
T KOG0316|consen  225 KN-MEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET  260 (307)
T ss_pred             cc-ceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence            21 1223456777788899999999999999998874

>KOG0278|consensus

Probab=100.00  E-value=3.3e-34  Score=218.36  Aligned_cols=286  Identities=18%  Similarity=0.229  Sum_probs=242.9

Q ss_pred             ccccceEEEEecC---CCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEec
Q psy17342         63 SKNRNVTYMDWST---QHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTY  139 (401)
Q Consensus        63 ~~~~~v~~~~~~~---~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~  139 (401)
                      +|.++|..++|+|   +|-+|++++          .|+.-.+-+-+++.-+.++. +|.+.|.+...+.+. ...++++.
T Consensus        12 ghtrpvvdl~~s~itp~g~flisa~----------kd~~pmlr~g~tgdwigtfe-ghkgavw~~~l~~na-~~aasaaa   79 (334)
T KOG0278|consen   12 GHTRPVVDLAFSPITPDGYFLISAS----------KDGKPMLRNGDTGDWIGTFE-GHKGAVWSATLNKNA-TRAASAAA   79 (334)
T ss_pred             CCCcceeEEeccCCCCCceEEEEec----------cCCCchhccCCCCCcEEeee-ccCcceeeeecCchh-hhhhhhcc
Confidence            5889999999985   787888888          79998888888888887765 569999999988744 67889999


Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                      |-+-++||.-++...       ....|..-|.+++|  +.+.++|++|+.+..+++||++....+..  +     ..+|.
T Consensus        80 dftakvw~a~tgdel-------hsf~hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~App~--E-----~~ght  143 (334)
T KOG0278|consen   80 DFTAKVWDAVTGDEL-------HSFEHKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPPK--E-----ISGHT  143 (334)
T ss_pred             cchhhhhhhhhhhhh-------hhhhhhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCch--h-----hcCCC
Confidence            999999999888754       23579999999999  99999999999999999999986443322  2     34599


Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      ..|..+-|. ...+.|++++.|+.||+||.+..+  .+.++. -..+|+++.++++      ++++. ....+.|.+||.
T Consensus       144 g~Ir~v~wc-~eD~~iLSSadd~tVRLWD~rTgt--~v~sL~-~~s~VtSlEvs~d------G~ilT-ia~gssV~Fwda  212 (334)
T KOG0278|consen  144 GGIRTVLWC-HEDKCILSSADDKTVRLWDHRTGT--EVQSLE-FNSPVTSLEVSQD------GRILT-IAYGSSVKFWDA  212 (334)
T ss_pred             CcceeEEEe-ccCceEEeeccCCceEEEEeccCc--EEEEEe-cCCCCcceeeccC------CCEEE-EecCceeEEecc
Confidence            999999999 788899999999999999998544  566665 5678999999998      55554 455789999999


Q ss_pred             eCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC
Q psy17342        300 KENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK  379 (401)
Q Consensus       300 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  379 (401)
                      .+..+++.++. ...|.+...+|+.. ++++|++|..++.||..++..+..+  ..+|.++|.+++|+|+|...++|+.|
T Consensus       213 ksf~~lKs~k~-P~nV~SASL~P~k~-~fVaGged~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdGE~yAsGSED  288 (334)
T KOG0278|consen  213 KSFGLLKSYKM-PCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDGELYASGSED  288 (334)
T ss_pred             ccccceeeccC-ccccccccccCCCc-eEEecCcceEEEEEeccCCceeeec--ccCCCCceEEEEECCCCceeeccCCC
Confidence            99999988886 66799999999985 8999999999999999999877664  24788999999999999999999999


Q ss_pred             CcEEEEEeccCc
Q psy17342        380 GAITMFDVGEVG  391 (401)
Q Consensus       380 g~v~iw~~~~~~  391 (401)
                      |+|++|.+..++
T Consensus       289 GTirlWQt~~~~  300 (334)
T KOG0278|consen  289 GTIRLWQTTPGK  300 (334)
T ss_pred             ceEEEEEecCCC
Confidence            999999997764

>KOG0282|consensus

Probab=100.00  E-value=2.3e-34  Score=238.51  Aligned_cols=283  Identities=16%  Similarity=0.289  Sum_probs=228.3

Q ss_pred             ccccceEEEEecC-CCCCeEEEEeccCCCCCCCCCcEEEEEeCcC-CCCCceEEEecCCCeeEEEEeCCCCceEEEEecC
Q psy17342         63 SKNRNVTYMDWST-QHPELLLASYHRNKEAPNEPDGVCLIWNTKF-KKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS  140 (401)
Q Consensus        63 ~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d  140 (401)
                      +|+..|+++.|.| .+.+|++++          .|+.|+||++-. ++++.++ .+|..+|.+++|++++ ..+.+++.|
T Consensus       212 gH~kgvsai~~fp~~~hLlLS~g----------mD~~vklW~vy~~~~~lrtf-~gH~k~Vrd~~~s~~g-~~fLS~sfD  279 (503)
T KOG0282|consen  212 GHTKGVSAIQWFPKKGHLLLSGG----------MDGLVKLWNVYDDRRCLRTF-KGHRKPVRDASFNNCG-TSFLSASFD  279 (503)
T ss_pred             CCccccchhhhccceeeEEEecC----------CCceEEEEEEecCcceehhh-hcchhhhhhhhccccC-Ceeeeeecc
Confidence            4889999999999 777788888          899999999976 5555555 4679999999999988 567778899


Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCc-eEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNA-HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                      +.|++||.++++....       ......++++.|  +|++ +.|++|+.|+.|+.||++...   ...+     ...|-
T Consensus       280 ~~lKlwDtETG~~~~~-------f~~~~~~~cvkf--~pd~~n~fl~G~sd~ki~~wDiRs~k---vvqe-----Yd~hL  342 (503)
T KOG0282|consen  280 RFLKLWDTETGQVLSR-------FHLDKVPTCVKF--HPDNQNIFLVGGSDKKIRQWDIRSGK---VVQE-----YDRHL  342 (503)
T ss_pred             eeeeeeccccceEEEE-------EecCCCceeeec--CCCCCcEEEEecCCCcEEEEeccchH---HHHH-----HHhhh
Confidence            9999999999986532       223456789999  7777 889999999999999999733   2222     23378


Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      ..|..+.|- +++..+++.++|+.+++|+.+.... .......+.....++..+|+      +.+++.-+.|..|.++.+
T Consensus       343 g~i~~i~F~-~~g~rFissSDdks~riWe~~~~v~-ik~i~~~~~hsmP~~~~~P~------~~~~~aQs~dN~i~ifs~  414 (503)
T KOG0282|consen  343 GAILDITFV-DEGRRFISSSDDKSVRIWENRIPVP-IKNIADPEMHTMPCLTLHPN------GKWFAAQSMDNYIAIFST  414 (503)
T ss_pred             hheeeeEEc-cCCceEeeeccCccEEEEEcCCCcc-chhhcchhhccCcceecCCC------CCeehhhccCceEEEEec
Confidence            899999999 8999999999999999999874332 11122234445678999999      799999999999999987


Q ss_pred             eCC---CceEEEeecC--CceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC-CcEE
Q psy17342        300 KEN---KPVHSFNEFR--DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN-GTQL  373 (401)
Q Consensus       300 ~~~---~~~~~~~~~~--~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l  373 (401)
                      ...   .....|++|.  +.-..+.|||||+ +|++|+.||.+.+||.++-+.+..++   .|..++..+.|+|. -..+
T Consensus       415 ~~~~r~nkkK~feGh~vaGys~~v~fSpDG~-~l~SGdsdG~v~~wdwkt~kl~~~lk---ah~~~ci~v~wHP~e~Skv  490 (503)
T KOG0282|consen  415 VPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR-TLCSGDSDGKVNFWDWKTTKLVSKLK---AHDQPCIGVDWHPVEPSKV  490 (503)
T ss_pred             ccccccCHhhhhcceeccCceeeEEEcCCCC-eEEeecCCccEEEeechhhhhhhccc---cCCcceEEEEecCCCccee
Confidence            542   2334566664  4567899999998 89999999999999999988776664   67889999999997 4679


Q ss_pred             EEEecCCcEEEEE
Q psy17342        374 CVGDEKGAITMFD  386 (401)
Q Consensus       374 ~~~~~dg~v~iw~  386 (401)
                      |+++.||.|++|+
T Consensus       491 at~~w~G~Ikiwd  503 (503)
T KOG0282|consen  491 ATCGWDGLIKIWD  503 (503)
T ss_pred             EecccCceeEecC
Confidence            9999999999996

>KOG0264|consensus

Probab=100.00  E-value=8.1e-33  Score=227.87  Aligned_cols=265  Identities=16%  Similarity=0.260  Sum_probs=217.7

Q ss_pred             eccccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCc--------e-EEEecCCCeeEEEEeC
Q psy17342         58 FDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTP--------E-FEFFCQSPVLSCCFAK  128 (401)
Q Consensus        58 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~--------~-~~~~~~~~v~~~~~~~  128 (401)
                      ...++.|.+.|+.+.+-|..+.|+++.         ...+.|.|||..+....+        . ...+|...-+.++|++
T Consensus       117 i~~~i~h~gEVnRaRymPQnp~iVAt~---------t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~  187 (422)
T KOG0264|consen  117 ISQKINHDGEVNRARYMPQNPNIVATK---------TSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNR  187 (422)
T ss_pred             EEEeccCCccchhhhhCCCCCcEEEec---------CCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccc
Confidence            345566889999999999999988876         378999999997633222        2 3345677788999999


Q ss_pred             CCCceEEEEecCCeEEEEECCCCCCC-ceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccc
Q psy17342        129 FNPYLILGGTYSGQIVLWDTRVQKKT-PVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQET  207 (401)
Q Consensus       129 ~~~~~l~~g~~dg~v~iw~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~  207 (401)
                      ...-.|++|+.|+.|++||+...... +.......+.+|...|..++|. ..+...|++++.|+.+.|||++.. .....
T Consensus       188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h-~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~  265 (422)
T KOG0264|consen  188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWH-PLHEDLFGSVGDDGKLMIWDTRSN-TSKPS  265 (422)
T ss_pred             ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhcc-ccchhhheeecCCCeEEEEEcCCC-CCCCc
Confidence            88789999999999999999876552 2222234568999999999995 345678999999999999999962 22222


Q ss_pred             cccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEE
Q psy17342        208 RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLT  287 (401)
Q Consensus       208 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s  287 (401)
                      ..     ...|..+|.|++|+|.++..||+|+.|++|.+||+++... ++.++.+|...|.++.|+|..     ...|++
T Consensus       266 ~~-----~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSPh~-----etvLAS  334 (422)
T KOG0264|consen  266 HS-----VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSPHN-----ETVLAS  334 (422)
T ss_pred             cc-----ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-CceeccCCCcceEEEEeCCCC-----CceeEe
Confidence            22     3458999999999999999999999999999999997654 688999999999999999987     789999


Q ss_pred             EeCCCeEEEEEeeCC--------------CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        288 SSYDWSVKLWNIKEN--------------KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       288 ~~~d~~i~iwd~~~~--------------~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      ++.|+.+.+||+..-              ++++.-.+|...|..+.|+|..+..+++.+.|+.+.||.+..
T Consensus       335 Sg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  335 SGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            999999999999641              234666789999999999999999999999999999999874

>KOG0266|consensus

Probab=100.00  E-value=6.5e-33  Score=248.73  Aligned_cols=279  Identities=22%  Similarity=0.314  Sum_probs=224.1

Q ss_pred             hhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEE
Q psy17342          5 EAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLAS   84 (401)
Q Consensus         5 ~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   84 (401)
                      ..|..+++++.++.+++|+......  .+                        .....+|...|.+++|+|+++++++++
T Consensus       169 ~~g~~l~~~~~~~~i~~~~~~~~~~--~~------------------------~~~l~~h~~~v~~~~fs~d~~~l~s~s  222 (456)
T KOG0266|consen  169 PDGRALAAASSDGLIRIWKLEGIKS--NL------------------------LRELSGHTRGVSDVAFSPDGSYLLSGS  222 (456)
T ss_pred             CCCCeEEEccCCCcEEEeecccccc--hh------------------------hccccccccceeeeEECCCCcEEEEec
Confidence            3466788899999999998844431  00                        000125778899999999999999999


Q ss_pred             eccCCCCCCCCCcEEEEEeCcCC-CCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccc
Q psy17342         85 YHRNKEAPNEPDGVCLIWNTKFK-KTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSV  163 (401)
Q Consensus        85 ~~~~~~~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~  163 (401)
                                .|++|+|||++.. ..+..+ .+|...|++++|+|++ +++++|+.|++|+|||+++++..      ..+
T Consensus       223 ----------~D~tiriwd~~~~~~~~~~l-~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~------~~l  284 (456)
T KOG0266|consen  223 ----------DDKTLRIWDLKDDGRNLKTL-KGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECV------RKL  284 (456)
T ss_pred             ----------CCceEEEeeccCCCeEEEEe-cCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEE------Eee
Confidence                      8999999999443 444433 4789999999999998 99999999999999999996654      335


Q ss_pred             cCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCce
Q psy17342        164 MAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGN  243 (401)
Q Consensus       164 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  243 (401)
                      .+|.+.|.+++|  ++++.+|++++.|+.|++||+.+.... ....+..  ..... .++++.|+ +++.++++++.|+.
T Consensus       285 ~~hs~~is~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~--~~~~~-~~~~~~fs-p~~~~ll~~~~d~~  357 (456)
T KOG0266|consen  285 KGHSDGISGLAF--SPDGNLLVSASYDGTIRVWDLETGSKL-CLKLLSG--AENSA-PVTSVQFS-PNGKYLLSASLDRT  357 (456)
T ss_pred             eccCCceEEEEE--CCCCCEEEEcCCCccEEEEECCCCcee-eeecccC--CCCCC-ceeEEEEC-CCCcEEEEecCCCe
Confidence            799999999999  999999999999999999999874321 1111111  11122 69999999 89999999999999


Q ss_pred             EEEEeCCCCCCCceeeecCCCCce---eeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeec-CCceEEEE
Q psy17342        244 VYSACRHGNKAGNVECYEGHEGPV---VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEF-RDYVMDVQ  319 (401)
Q Consensus       244 i~~~~~~~~~~~~~~~~~~~~~~v---~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~v~  319 (401)
                      +++|++..  ......+.+|...+   .+....+.      +.++++|+.|+.|++||+.++..+..+.+| ...+..+.
T Consensus       358 ~~~w~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~  429 (456)
T KOG0266|consen  358 LKLWDLRS--GKSVGTYTGHSNLVRCIFSPTLSTG------GKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLS  429 (456)
T ss_pred             EEEEEccC--CcceeeecccCCcceeEecccccCC------CCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccc
Confidence            99999984  44677888887753   33334444      799999999999999999999999999999 88999999


Q ss_pred             ECCCCCcEEEEEe--cCCEEEEEeCC
Q psy17342        320 WSPINPALFATVE--VAGRVDLWNLN  343 (401)
Q Consensus       320 ~~~~~~~~l~~~~--~d~~i~iwd~~  343 (401)
                      ++|... ++++++  .|+.+++|...
T Consensus       430 ~~~~~~-~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  430 SHPTEN-LIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             cCCCcC-eeeecCcCCCceEEEecCC
Confidence            999987 788887  68999999754

>KOG0310|consensus

Probab=100.00  E-value=6.5e-33  Score=230.24  Aligned_cols=284  Identities=16%  Similarity=0.181  Sum_probs=228.7

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIV  144 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~  144 (401)
                      ...|.+++|+|..++=++..          ..-.+.||+..+...... .......|+++.|..|| .++++|...|.|+
T Consensus        26 ~~~vssl~fsp~~P~d~aVt----------~S~rvqly~~~~~~~~k~-~srFk~~v~s~~fR~DG-~LlaaGD~sG~V~   93 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVT----------SSVRVQLYSSVTRSVRKT-FSRFKDVVYSVDFRSDG-RLLAAGDESGHVK   93 (487)
T ss_pred             cCcceeEecCCCCCCceEEe----------cccEEEEEecchhhhhhh-HHhhccceeEEEeecCC-eEEEccCCcCcEE
Confidence            37899999999887644444          378999999986443332 23347889999999988 8999999999999


Q ss_pred             EEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342        145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS  224 (401)
Q Consensus       145 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (401)
                      |+|..+....      ..+.+|+.+|..+.|. ..++..+++|+.|+.+++||+.+..   ....     ..+|+..|.|
T Consensus        94 vfD~k~r~iL------R~~~ah~apv~~~~f~-~~d~t~l~s~sDd~v~k~~d~s~a~---v~~~-----l~~htDYVR~  158 (487)
T KOG0310|consen   94 VFDMKSRVIL------RQLYAHQAPVHVTKFS-PQDNTMLVSGSDDKVVKYWDLSTAY---VQAE-----LSGHTDYVRC  158 (487)
T ss_pred             EeccccHHHH------HHHhhccCceeEEEec-ccCCeEEEecCCCceEEEEEcCCcE---EEEE-----ecCCcceeEe
Confidence            9996553221      3468999999999993 3456678889999999999998632   1223     4569999999


Q ss_pred             EEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC-CC
Q psy17342        225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE-NK  303 (401)
Q Consensus       225 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~  303 (401)
                      .+++|.++..+++|+.||.|++||.+... ..+..+. |..+|.++.+-|.      +.++++++ ...|++||+.+ ++
T Consensus       159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~eln-hg~pVe~vl~lps------gs~iasAg-Gn~vkVWDl~~G~q  229 (487)
T KOG0310|consen  159 GDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELN-HGCPVESVLALPS------GSLIASAG-GNSVKVWDLTTGGQ  229 (487)
T ss_pred             eccccCCCeEEEecCCCceEEEEEeccCC-ceeEEec-CCCceeeEEEcCC------CCEEEEcC-CCeEEEEEecCCce
Confidence            99998888899999999999999998665 3455555 9999999999998      78999988 67899999985 45


Q ss_pred             ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEE
Q psy17342        304 PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAIT  383 (401)
Q Consensus       304 ~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~  383 (401)
                      .+..+..|...|+|+++..++. .|++++-|+.+++||+.+.+.+..+    .-.++|.+++.+|+++.++.|..+|.+.
T Consensus       230 ll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~~Kvv~s~----~~~~pvLsiavs~dd~t~viGmsnGlv~  304 (487)
T KOG0310|consen  230 LLTSMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTNYKVVHSW----KYPGPVLSIAVSPDDQTVVIGMSNGLVS  304 (487)
T ss_pred             ehhhhhcccceEEEEEeecCCc-eEeecccccceEEEEccceEEEEee----ecccceeeEEecCCCceEEEecccceee
Confidence            5566666999999999999986 7899999999999998776544443    4478899999999999999999999887


Q ss_pred             EEEecc
Q psy17342        384 MFDVGE  389 (401)
Q Consensus       384 iw~~~~  389 (401)
                      +=+...
T Consensus       305 ~rr~~~  310 (487)
T KOG0310|consen  305 IRRREV  310 (487)
T ss_pred             eehhhc
Confidence            765443

>KOG0276|consensus

Probab=100.00  E-value=2.5e-33  Score=239.27  Aligned_cols=247  Identities=16%  Similarity=0.248  Sum_probs=217.4

Q ss_pred             cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEe
Q psy17342        117 CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSW  196 (401)
Q Consensus       117 ~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~w  196 (401)
                      +...|.++.|+|..+ .++++-.+|.|.||+.++....      .++....-||++..|  -...+.+++|+.|..|++|
T Consensus        12 rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetqtmV------ksfeV~~~PvRa~kf--iaRknWiv~GsDD~~IrVf   82 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQTMV------KSFEVSEVPVRAAKF--IARKNWIVTGSDDMQIRVF   82 (794)
T ss_pred             cCCceeeeecCCCCc-eEEEeeecCeeEEEecccceee------eeeeecccchhhhee--eeccceEEEecCCceEEEE
Confidence            578999999999775 6666778999999999987654      234556778999998  6788899999999999999


Q ss_pred             eccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccC
Q psy17342        197 SLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQ  276 (401)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  276 (401)
                      +.++..+.   ..     +..|..-|++++.+ |...++++++.|-.|++||.+. ...+.++|+||..-|++++|+|.+
T Consensus        83 nynt~ekV---~~-----FeAH~DyIR~iavH-Pt~P~vLtsSDDm~iKlW~we~-~wa~~qtfeGH~HyVMqv~fnPkD  152 (794)
T KOG0276|consen   83 NYNTGEKV---KT-----FEAHSDYIRSIAVH-PTLPYVLTSSDDMTIKLWDWEN-EWACEQTFEGHEHYVMQVAFNPKD  152 (794)
T ss_pred             ecccceee---EE-----eeccccceeeeeec-CCCCeEEecCCccEEEEeeccC-ceeeeeEEcCcceEEEEEEecCCC
Confidence            99874322   22     45599999999999 7888999999999999999874 345788999999999999999987


Q ss_pred             CCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCC--CcEEEEEecCCEEEEEeCCCCCCCcceEEe
Q psy17342        277 GHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPIN--PALFATVEVAGRVDLWNLNLDTEVPATSAI  354 (401)
Q Consensus       277 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  354 (401)
                           .+.|++++-|++|++|.+.+..+..++++|...|+++.+-+.|  + +|++|+.|.+|+|||..+..+++++.  
T Consensus       153 -----~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkp-ylIsgaDD~tiKvWDyQtk~CV~TLe--  224 (794)
T KOG0276|consen  153 -----PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKP-YLISGADDLTIKVWDYQTKSCVQTLE--  224 (794)
T ss_pred             -----ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcc-eEEecCCCceEEEeecchHHHHHHhh--
Confidence                 7999999999999999999999999999999999999998865  5 79999999999999999999888875  


Q ss_pred             ecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        355 VEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       355 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                       +|...|..+.|+|.-.++++|+.||+|+||+-.+-+
T Consensus       225 -GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~  260 (794)
T KOG0276|consen  225 -GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK  260 (794)
T ss_pred             -cccccceEEEecCCCcEEEEecCCccEEEecCccee
Confidence             788899999999999999999999999999987754

>KOG0306|consensus

Probab=100.00  E-value=1.1e-32  Score=240.09  Aligned_cols=328  Identities=16%  Similarity=0.246  Sum_probs=257.9

Q ss_pred             CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCe
Q psy17342          1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL   80 (401)
Q Consensus         1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   80 (401)
                      |+++..|..+|||+.|+.|-+||+.++..+..+                            -+|++.|+.+-|..+.+.+
T Consensus       113 l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL----------------------------~GHkd~iT~~~F~~~~~~l  164 (888)
T KOG0306|consen  113 LKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL----------------------------RGHKDSITQALFLNGDSFL  164 (888)
T ss_pred             EEEcccCceEeecCCCccEEEEEeccceeeEEe----------------------------ecchHHHhHHhccCCCeEE
Confidence            567888999999999999999999888733222                            1678899999999878889


Q ss_pred             EEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCC--C------
Q psy17342         81 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQ--K------  152 (401)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~--~------  152 (401)
                      ++++          .|+.|++||+++..+..+. ..|.+.+..+++.+   ++++++..|+.+++|++...  +      
T Consensus       165 vS~s----------KDs~iK~WdL~tqhCf~Th-vd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~  230 (888)
T KOG0306|consen  165 VSVS----------KDSMIKFWDLETQHCFETH-VDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRY  230 (888)
T ss_pred             EEec----------cCceEEEEecccceeeeEE-ecccceEEEEEEec---ceEEEEecCCceEEEEeeccccccccccc
Confidence            9888          8999999999987776554 45689999999986   56777778999999998210  0      


Q ss_pred             ----------------C---------------------------------------------------------------
Q psy17342        153 ----------------K---------------------------------------------------------------  153 (401)
Q Consensus       153 ----------------~---------------------------------------------------------------  153 (401)
                                      .                                                               
T Consensus       231 ~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~  310 (888)
T KOG0306|consen  231 ISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDE  310 (888)
T ss_pred             ceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHH
Confidence                            0                                                               


Q ss_pred             -----------------------Cc-----------------e---------eeccccccCCCCcEEEEEEeecCCceEE
Q psy17342        154 -----------------------TP-----------------V---------HRTPLSVMAHTHPVFCMSVIGTQNAHNL  184 (401)
Q Consensus       154 -----------------------~~-----------------~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~l  184 (401)
                                             ..                 .         ....+.+.+|...|+++++  +.+...+
T Consensus       311 i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v--S~d~~~~  388 (888)
T KOG0306|consen  311 IKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV--SSDSILL  388 (888)
T ss_pred             HHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe--ecCceee
Confidence                                   00                 0         0001345789999999999  7676666


Q ss_pred             EEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCC
Q psy17342        185 ISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHE  264 (401)
Q Consensus       185 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~  264 (401)
                      ++++ .+.+++|+..+.. +..++.         ...+.+..|. |..+++++|..+|.+.+||+...  ..+.+.++|.
T Consensus       389 ~Sga-~~SikiWn~~t~k-ciRTi~---------~~y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdlaS~--~l~Eti~AHd  454 (888)
T KOG0306|consen  389 ASGA-GESIKIWNRDTLK-CIRTIT---------CGYILASKFV-PGDRYIVLGTKNGELQVFDLASA--SLVETIRAHD  454 (888)
T ss_pred             eecC-CCcEEEEEccCcc-eeEEec---------cccEEEEEec-CCCceEEEeccCCceEEEEeehh--hhhhhhhccc
Confidence            6654 5689999988632 222222         2367888899 78999999999999999999843  4677888999


Q ss_pred             CceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC-----CCce--------EEEeecCCceEEEEECCCCCcEEEEE
Q psy17342        265 GPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE-----NKPV--------HSFNEFRDYVMDVQWSPINPALFATV  331 (401)
Q Consensus       265 ~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~--------~~~~~~~~~v~~v~~~~~~~~~l~~~  331 (401)
                      +.|.+++..|+      +..+++||.|.+|++||..-     +...        .+++ -...|.++.+|||++ +||.+
T Consensus       455 gaIWsi~~~pD------~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk-~LaVs  526 (888)
T KOG0306|consen  455 GAIWSISLSPD------NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGK-LLAVS  526 (888)
T ss_pred             cceeeeeecCC------CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCc-EEEEE
Confidence            99999999999      79999999999999999852     1111        1222 256799999999998 89999


Q ss_pred             ecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeeee
Q psy17342        332 EVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT  399 (401)
Q Consensus       332 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~~  399 (401)
                      --|++++||-+.+-+..-.+   .+|.-+|.++..|||++.+++|+.|..|+||-+.=|  .|-+.+.
T Consensus       527 LLdnTVkVyflDtlKFflsL---YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG--DCHKS~f  589 (888)
T KOG0306|consen  527 LLDNTVKVYFLDTLKFFLSL---YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG--DCHKSFF  589 (888)
T ss_pred             eccCeEEEEEecceeeeeee---cccccceeEEeccCCcCeEEeccCCCceEEeccccc--hhhhhhh
Confidence            99999999999987654333   588999999999999999999999999999998876  4555443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.6e-32  Score=262.86  Aligned_cols=285  Identities=13%  Similarity=0.198  Sum_probs=217.1

Q ss_pred             chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCC-CCCe
Q psy17342          2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQ-HPEL   80 (401)
Q Consensus         2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l   80 (401)
                      .|...+.++++|+.||.|+||+.......      ..         .......      ...+...|.+++|+|. +..|
T Consensus       490 ~fs~dg~~latgg~D~~I~iwd~~~~~~~------~~---------~~~~~~~------~~~~~~~v~~l~~~~~~~~~l  548 (793)
T PLN00181        490 GFDRDGEFFATAGVNKKIKIFECESIIKD------GR---------DIHYPVV------ELASRSKLSGICWNSYIKSQV  548 (793)
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCccccc------cc---------ccccceE------EecccCceeeEEeccCCCCEE
Confidence            46667889999999999999997532100      00         0000000      0122357999999885 6678


Q ss_pred             EEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecc
Q psy17342         81 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP  160 (401)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~  160 (401)
                      ++++          .|++|++||+.+++.+..+ ..|...|++++|+|.++.+|++|+.||.|++||++++.....    
T Consensus       549 as~~----------~Dg~v~lWd~~~~~~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~----  613 (793)
T PLN00181        549 ASSN----------FEGVVQVWDVARSQLVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT----  613 (793)
T ss_pred             EEEe----------CCCeEEEEECCCCeEEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE----
Confidence            8888          7999999999876655433 357889999999985558999999999999999987654321    


Q ss_pred             ccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC
Q psy17342        161 LSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE  240 (401)
Q Consensus       161 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  240 (401)
                        +. +...|.++.|. ++++..|++|+.||.|++||++....+..  .     ..+|...|.++.|.  ++..+++++.
T Consensus       614 --~~-~~~~v~~v~~~-~~~g~~latgs~dg~I~iwD~~~~~~~~~--~-----~~~h~~~V~~v~f~--~~~~lvs~s~  680 (793)
T PLN00181        614 --IK-TKANICCVQFP-SESGRSLAFGSADHKVYYYDLRNPKLPLC--T-----MIGHSKTVSYVRFV--DSSTLVSSST  680 (793)
T ss_pred             --Ee-cCCCeEEEEEe-CCCCCEEEEEeCCCeEEEEECCCCCccce--E-----ecCCCCCEEEEEEe--CCCEEEEEEC
Confidence              22 33578899883 45789999999999999999975322221  1     33488899999997  5778999999


Q ss_pred             CceEEEEeCCCC----CCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEE--------
Q psy17342        241 DGNVYSACRHGN----KAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSF--------  308 (401)
Q Consensus       241 d~~i~~~~~~~~----~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------  308 (401)
                      |+.|++||++..    ...++..+.+|...+.++.|+|.      +.+|++|+.|+.|++|+.....++..+        
T Consensus       681 D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~------~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~  754 (793)
T PLN00181        681 DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVS------DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPV  754 (793)
T ss_pred             CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCC------CCEEEEEeCCCEEEEEECCCCCceEEEecccCCcc
Confidence            999999998742    22457789999999999999998      789999999999999998765544332        


Q ss_pred             -----eecCCceEEEEECCCCCcEEEEEecCCEEEEEeC
Q psy17342        309 -----NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNL  342 (401)
Q Consensus       309 -----~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~  342 (401)
                           ..+...|.+++|+|++. ++++++.||.|+||++
T Consensus       755 ~~~~~~~~~~~V~~v~ws~~~~-~lva~~~dG~I~i~~~  792 (793)
T PLN00181        755 SGLEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILEM  792 (793)
T ss_pred             cccccCCCCcEEEEEEEcCCCC-eEEEecCCCcEEEEec
Confidence                 22455799999999997 7899999999999996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.1e-32  Score=233.17  Aligned_cols=275  Identities=19%  Similarity=0.269  Sum_probs=223.8

Q ss_pred             CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCe
Q psy17342          1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL   80 (401)
Q Consensus         1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   80 (401)
                      |.|...++.+++|+.+|.+++|+.........                            ...|...+..+.|+|+++.+
T Consensus        15 ~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~----------------------------~~~~~~~i~~~~~~~~~~~l   66 (289)
T cd00200          15 VAFSPDGKLLATGSGDGTIKVWDLETGELLRT----------------------------LKGHTGPVRDVAASADGTYL   66 (289)
T ss_pred             EEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE----------------------------EecCCcceeEEEECCCCCEE
Confidence            45667788999999999999999875541100                            01344678899999999899


Q ss_pred             EEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecc
Q psy17342         81 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP  160 (401)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~  160 (401)
                      ++++          .++.|++|++.+++....+. .+...+.++.|+|++ .++++++.+|.|.+||+.+.+..      
T Consensus        67 ~~~~----------~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~------  128 (289)
T cd00200          67 ASGS----------SDKTIRLWDLETGECVRTLT-GHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCL------  128 (289)
T ss_pred             EEEc----------CCCeEEEEEcCcccceEEEe-ccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEE------
Confidence            9998          79999999999765544443 456789999999975 78888877999999999865432      


Q ss_pred             ccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC
Q psy17342        161 LSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE  240 (401)
Q Consensus       161 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  240 (401)
                      ..+..|...+.+++|  ++++.++++++.|+.+++||++... ....       ...+...+.++.|+ ++++.+++++.
T Consensus       129 ~~~~~~~~~i~~~~~--~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~-------~~~~~~~i~~~~~~-~~~~~l~~~~~  197 (289)
T cd00200         129 TTLRGHTDWVNSVAF--SPDGTFVASSSQDGTIKLWDLRTGK-CVAT-------LTGHTGEVNSVAFS-PDGEKLLSSSS  197 (289)
T ss_pred             EEeccCCCcEEEEEE--cCcCCEEEEEcCCCcEEEEEccccc-ccee-------EecCccccceEEEC-CCcCEEEEecC
Confidence            223578889999999  8888888888889999999997422 2221       12366789999999 78889999999


Q ss_pred             CceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEE
Q psy17342        241 DGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQW  320 (401)
Q Consensus       241 d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~  320 (401)
                      ++.+++||.+.  ...+..+..|...+.++.|+|+      +.++++++.|+.|++||+.+++++..+..|...+.+++|
T Consensus       198 ~~~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~  269 (289)
T cd00200         198 DGTIKLWDLST--GKCLGTLRGHENGVNSVAFSPD------GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAW  269 (289)
T ss_pred             CCcEEEEECCC--CceecchhhcCCceEEEEEcCC------CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEE
Confidence            99999999974  3356677688899999999998      688888888999999999999999999999999999999


Q ss_pred             CCCCCcEEEEEecCCEEEEEe
Q psy17342        321 SPINPALFATVEVAGRVDLWN  341 (401)
Q Consensus       321 ~~~~~~~l~~~~~d~~i~iwd  341 (401)
                      +|+++ ++++++.|+.+++|+
T Consensus       270 ~~~~~-~l~~~~~d~~i~iw~  289 (289)
T cd00200         270 SPDGK-RLASGSADGTIRIWD  289 (289)
T ss_pred             CCCCC-EEEEecCCCeEEecC
Confidence            99987 789999999999996

>KOG0275|consensus

Probab=100.00  E-value=6.6e-34  Score=224.84  Aligned_cols=281  Identities=19%  Similarity=0.273  Sum_probs=238.7

Q ss_pred             hhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEe
Q psy17342          6 AGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASY   85 (401)
Q Consensus         6 ~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   85 (401)
                      .+.++++|+.||-+.||+...++    +..|++|+...                .-..+.++|.|++|+.|...|++|+ 
T Consensus       224 DgqyLvsgSvDGFiEVWny~~GK----lrKDLkYQAqd----------------~fMMmd~aVlci~FSRDsEMlAsGs-  282 (508)
T KOG0275|consen  224 DGQYLVSGSVDGFIEVWNYTTGK----LRKDLKYQAQD----------------NFMMMDDAVLCISFSRDSEMLASGS-  282 (508)
T ss_pred             CCceEeeccccceeeeehhccch----hhhhhhhhhhc----------------ceeecccceEEEeecccHHHhhccC-
Confidence            57899999999999999998887    33444432111                1113558899999999999999999 


Q ss_pred             ccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccC
Q psy17342         86 HRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMA  165 (401)
Q Consensus        86 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~  165 (401)
                               .||.|++|.+.++.++.++...|...|+|+.|+.|+ ..+.+++.|.++++--+.+++..      ..+.+
T Consensus       283 ---------qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~L------KEfrG  346 (508)
T KOG0275|consen  283 ---------QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCL------KEFRG  346 (508)
T ss_pred             ---------cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhH------HHhcC
Confidence                     899999999999999999988899999999999988 56778889999999999998865      34689


Q ss_pred             CCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEE
Q psy17342        166 HTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVY  245 (401)
Q Consensus       166 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  245 (401)
                      |...|+...|  .++|..+++++.||+|++|+..+ ..+..+++...     ...+|.++-..|.+...++++...+.++
T Consensus       347 HsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~Kt-teC~~Tfk~~~-----~d~~vnsv~~~PKnpeh~iVCNrsntv~  418 (508)
T KOG0275|consen  347 HSSYVNEATF--TDDGHHIISASSDGTVKVWHGKT-TECLSTFKPLG-----TDYPVNSVILLPKNPEHFIVCNRSNTVY  418 (508)
T ss_pred             ccccccceEE--cCCCCeEEEecCCccEEEecCcc-hhhhhhccCCC-----CcccceeEEEcCCCCceEEEEcCCCeEE
Confidence            9999999999  99999999999999999999987 34444444333     6778999999988999999999999999


Q ss_pred             EEeCCCCCCCceeeecC---CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECC
Q psy17342        246 SACRHGNKAGNVECYEG---HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP  322 (401)
Q Consensus       246 ~~~~~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  322 (401)
                      +.++.+.   .++.|..   ..+...+...+|.      +.++.+.+.|+.++.|.+.+|+...++..|...+..++-+|
T Consensus       419 imn~qGQ---vVrsfsSGkREgGdFi~~~lSpk------GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP  489 (508)
T KOG0275|consen  419 IMNMQGQ---VVRSFSSGKREGGDFINAILSPK------GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP  489 (508)
T ss_pred             EEeccce---EEeeeccCCccCCceEEEEecCC------CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCc
Confidence            9998654   4555542   3455667788898      89999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEecCCEEEEEe
Q psy17342        323 INPALFATVEVAGRVDLWN  341 (401)
Q Consensus       323 ~~~~~l~~~~~d~~i~iwd  341 (401)
                      ..+ ++|+-++||.+++|.
T Consensus       490 HqN-llAsYsEDgllKLWk  507 (508)
T KOG0275|consen  490 HQN-LLASYSEDGLLKLWK  507 (508)
T ss_pred             ccc-hhhhhcccchhhhcC
Confidence            986 899999999999995

>KOG1587|consensus

Probab=100.00  E-value=7.5e-32  Score=238.89  Aligned_cols=320  Identities=37%  Similarity=0.670  Sum_probs=256.8

Q ss_pred             ccccceEEEEecCCCC--CeEEEEeccCCC--------CCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCc
Q psy17342         63 SKNRNVTYMDWSTQHP--ELLLASYHRNKE--------APNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPY  132 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~--~l~~~~~~~~~~--------~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  132 (401)
                      .+...+.++.|.|++.  ...+..|..+..        +....++.+.||+++.. ..++..+.....|++++|+|..++
T Consensus       178 ~~~~~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~  256 (555)
T KOG1587|consen  178 SPKRQVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNP-NTPELVLESPSEVTCLKFCPFDPN  256 (555)
T ss_pred             chhcceeeeeeccCCCcceEEEEeecccccccccccccccccCCceEEEEecCCC-CCceEEEecCCceeEEEeccCCcc
Confidence            3556788888888776  344444443222        22234468999999965 788899999999999999999999


Q ss_pred             eEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccc
Q psy17342        133 LILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY  212 (401)
Q Consensus       133 ~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~  212 (401)
                      +++.|..+|+|.+||++.....+..........|..++..+.|..+..+.-|++++.||.|..|+++....|.....+..
T Consensus       257 ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~  336 (555)
T KOG1587|consen  257 LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLES  336 (555)
T ss_pred             eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccc
Confidence            99999999999999999887654333334456899999999997666667799999999999999988776665554443


Q ss_pred             cc----ccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCc------eeeecCCCCceeeeecCccCCCCCCC
Q psy17342        213 NN----KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGN------VECYEGHEGPVVGLSSHRAQGHIDFS  282 (401)
Q Consensus       213 ~~----~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~------~~~~~~~~~~v~~i~~~~~~~~~~~~  282 (401)
                      ..    .......+++++|.+.+...+++|+++|.|+.-+..+.....      ...+..|.++|+++.++|..     .
T Consensus       337 ~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~-----~  411 (555)
T KOG1587|consen  337 KKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY-----P  411 (555)
T ss_pred             ccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCc-----c
Confidence            11    113456789999998899999999999999986665544333      44566788999999999986     5


Q ss_pred             cEEEEEeCCCeEEEEEee-CCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCe
Q psy17342        283 HLYLTSSYDWSVKLWNIK-ENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPAL  361 (401)
Q Consensus       283 ~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  361 (401)
                      ..|++++ |-+++||... ...++..+..+...|++++|||..+.+|+++..||.|.|||+......+....... ....
T Consensus       412 k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l  489 (555)
T KOG1587|consen  412 KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPAL  489 (555)
T ss_pred             ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-cccc
Confidence            6777777 9999999988 77888888888888999999999999999999999999999998887777766544 6677


Q ss_pred             EEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        362 SRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       362 ~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      +.+.|+++|+.|++|...|.+++|++...
T Consensus       490 ~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  490 TRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             ceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            88999999999999999999999999654

>KOG0640|consensus

Probab=100.00  E-value=1.3e-32  Score=216.06  Aligned_cols=293  Identities=13%  Similarity=0.145  Sum_probs=235.8

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcC------------C-----CCCceEEEecCCCeeEEE
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKF------------K-----KTTPEFEFFCQSPVLSCC  125 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~------------~-----~~~~~~~~~~~~~v~~~~  125 (401)
                      .|+.++.+.+|+|||.++++|+          .|..|+|.|++.            +     ..+.+..+.|..+|+++.
T Consensus       110 ~HK~~cR~aafs~DG~lvATGs----------aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~  179 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPDGSLVATGS----------ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD  179 (430)
T ss_pred             ecccceeeeeeCCCCcEEEccC----------CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee
Confidence            4789999999999999999999          899999999861            1     112223456889999999


Q ss_pred             EeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCc
Q psy17342        126 FAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQ  205 (401)
Q Consensus       126 ~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~  205 (401)
                      |+|.. .+|++|+.|++|+++|+........    ........+|.+++|  +|.|.+|+.|..--++++||+++.+.- 
T Consensus       180 FHPre-~ILiS~srD~tvKlFDfsK~saKrA----~K~~qd~~~vrsiSf--HPsGefllvgTdHp~~rlYdv~T~Qcf-  251 (430)
T KOG0640|consen  180 FHPRE-TILISGSRDNTVKLFDFSKTSAKRA----FKVFQDTEPVRSISF--HPSGEFLLVGTDHPTLRLYDVNTYQCF-  251 (430)
T ss_pred             ecchh-heEEeccCCCeEEEEecccHHHHHH----HHHhhccceeeeEee--cCCCceEEEecCCCceeEEeccceeEe-
Confidence            99955 8999999999999999987544322    223456779999999  999999999999999999999863321 


Q ss_pred             cccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec-CCC-CceeeeecCccCCCCCCCc
Q psy17342        206 ETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE-GHE-GPVVGLSSHRAQGHIDFSH  283 (401)
Q Consensus       206 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~-~~~-~~v~~i~~~~~~~~~~~~~  283 (401)
                        ....+  ...|...|+++.++ +.+++.++|+.||.|++||--  ..+++.++. .|. ..|.+..|..+      ++
T Consensus       252 --vsanP--d~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwDGV--S~rCv~t~~~AH~gsevcSa~Ftkn------~k  318 (430)
T KOG0640|consen  252 --VSANP--DDQHTGAITQVRYS-STGSLYVTASKDGAIKLWDGV--SNRCVRTIGNAHGGSEVCSAVFTKN------GK  318 (430)
T ss_pred             --eecCc--ccccccceeEEEec-CCccEEEEeccCCcEEeeccc--cHHHHHHHHhhcCCceeeeEEEccC------Ce
Confidence              11112  45699999999999 899999999999999999976  444677665 454 46888899988      89


Q ss_pred             EEEEEeCCCeEEEEEeeCCCceEEEeecC-----CceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCC
Q psy17342        284 LYLTSSYDWSVKLWNIKENKPVHSFNEFR-----DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGA  358 (401)
Q Consensus       284 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  358 (401)
                      ++++.+.|..+++|.+.+++++.++.+..     ..-+...|+....++|.---..+.+.-||.++...+..+.  .+|.
T Consensus       319 yiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s--lgHn  396 (430)
T KOG0640|consen  319 YILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS--LGHN  396 (430)
T ss_pred             EEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc--cCCC
Confidence            99999999999999999999999987631     1223456777776555555556789999999988766654  5899


Q ss_pred             CCeEEEEecCCCcEEEEEecCCcEEEEEec
Q psy17342        359 PALSRVTWTPNGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       359 ~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~  388 (401)
                      +.+..+.-||.+.-+++++.|-.+++|--+
T Consensus       397 ~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  397 GAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             CCceEEEeCCCCCceeeecccceeeeeeec
Confidence            999999999999999999999999999764

>KOG1036|consensus

Probab=100.00  E-value=1.7e-31  Score=209.72  Aligned_cols=283  Identities=19%  Similarity=0.266  Sum_probs=225.2

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQI  143 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v  143 (401)
                      +.+.|++|.|+|.+..|+++++          ||.+++||.......  ..+.|..++.+++|.++  ..+++|+.||.|
T Consensus        12 P~d~IS~v~f~~~~~~LLvssW----------DgslrlYdv~~~~l~--~~~~~~~plL~c~F~d~--~~~~~G~~dg~v   77 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSW----------DGSLRLYDVPANSLK--LKFKHGAPLLDCAFADE--STIVTGGLDGQV   77 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEec----------cCcEEEEeccchhhh--hheecCCceeeeeccCC--ceEEEeccCceE
Confidence            4578999999999999999995          999999999866433  45677899999999974  578899999999


Q ss_pred             EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceE
Q psy17342        144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL  223 (401)
Q Consensus       144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (401)
                      +.+|++++...       .+..|..+|.++.+  .+....+++|+.|++|++||.+. ......        ......|.
T Consensus        78 r~~Dln~~~~~-------~igth~~~i~ci~~--~~~~~~vIsgsWD~~ik~wD~R~-~~~~~~--------~d~~kkVy  139 (323)
T KOG1036|consen   78 RRYDLNTGNED-------QIGTHDEGIRCIEY--SYEVGCVISGSWDKTIKFWDPRN-KVVVGT--------FDQGKKVY  139 (323)
T ss_pred             EEEEecCCcce-------eeccCCCceEEEEe--eccCCeEEEcccCccEEEEeccc-cccccc--------cccCceEE
Confidence            99999988753       34789999999999  77888999999999999999984 111111        11334889


Q ss_pred             EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC-
Q psy17342        224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN-  302 (401)
Q Consensus       224 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-  302 (401)
                      ++...   ++.|++|+.+..+.+||++.........-..-+-.+.|+++.|+      +.-++.++-||+|.+=.+... 
T Consensus       140 ~~~v~---g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn------~eGy~~sSieGRVavE~~d~s~  210 (323)
T KOG1036|consen  140 CMDVS---GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPN------GEGYVVSSIEGRVAVEYFDDSE  210 (323)
T ss_pred             EEecc---CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecC------CCceEEEeecceEEEEccCCch
Confidence            98865   78999999999999999986544332222334567899999997      677888899999998777654 


Q ss_pred             ---CceEEEeecCC---------ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC
Q psy17342        303 ---KPVHSFNEFRD---------YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG  370 (401)
Q Consensus       303 ---~~~~~~~~~~~---------~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  370 (401)
                         +....|+.|..         +|++++|+|-.+ .||+|+.||.|.+||+.+.+.+..+.   .....|.+++|+.+|
T Consensus       211 ~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~rKrl~q~~---~~~~SI~slsfs~dG  286 (323)
T KOG1036|consen  211 EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFNRKRLKQLA---KYETSISSLSFSMDG  286 (323)
T ss_pred             HHhhhceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCcchhhhhhcc---CCCCceEEEEeccCC
Confidence               44456776653         799999999976 79999999999999999887766653   335679999999999


Q ss_pred             cEEEEEec-----CCc-------EEEEEeccCc
Q psy17342        371 TQLCVGDE-----KGA-------ITMFDVGEVG  391 (401)
Q Consensus       371 ~~l~~~~~-----dg~-------v~iw~~~~~~  391 (401)
                      ..||+++.     ...       |.|.++.+.+
T Consensus       287 ~~LAia~sy~ye~~~~~~~~~~~i~I~~l~d~e  319 (323)
T KOG1036|consen  287 SLLAIASSYQYERADTPTHERNAIFIRDLTDYE  319 (323)
T ss_pred             CeEEEEechhhhcCCCCCCCCCceEEEeccccc
Confidence            99999874     223       7777776654

>KOG0772|consensus

Probab=100.00  E-value=8.6e-33  Score=230.96  Aligned_cols=298  Identities=17%  Similarity=0.229  Sum_probs=229.5

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCC----CCceEEEecCCCeeEEEEeCCCCceEEEEec
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK----TTPEFEFFCQSPVLSCCFAKFNPYLILGGTY  139 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~  139 (401)
                      |...|.++++.|.|..+++|+          -|.+|++||.....    ....+.......|.+++|++.+..+|+. +.
T Consensus       166 gtk~Vsal~~Dp~GaR~~sGs----------~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvv-sg  234 (641)
T KOG0772|consen  166 GTKIVSALAVDPSGARFVSGS----------LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVV-SG  234 (641)
T ss_pred             CceEEEEeeecCCCceeeecc----------ccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEE-ec
Confidence            678899999999999999999          59999999997421    1222222246789999999988555544 45


Q ss_pred             CCeEEEEECCCCCCCcee------eccccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCcccccccc
Q psy17342        140 SGQIVLWDTRVQKKTPVH------RTPLSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQETRDLQY  212 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~  212 (401)
                      ....+|+|-+........      +.....++|...+++.+|  +|. ...|++++.||++++||+.......+.++...
T Consensus       235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~w--hP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~  312 (641)
T KOG0772|consen  235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCW--HPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP  312 (641)
T ss_pred             CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeecccc--ccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence            678999997765432211      112335899999999999  554 45799999999999999987554444444433


Q ss_pred             ccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCce-eeecCCCC--ceeeeecCccCCCCCCCcEEEEEe
Q psy17342        213 NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNV-ECYEGHEG--PVVGLSSHRAQGHIDFSHLYLTSS  289 (401)
Q Consensus       213 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~-~~~~~~~~--~v~~i~~~~~~~~~~~~~~l~s~~  289 (401)
                        ..+....++.++|+ +++..||+|+.||.|.+|+..+....+. ..-.+|..  .|+||.|+++      +++|++-+
T Consensus       313 --~~g~Rv~~tsC~~n-rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d------g~~LlSRg  383 (641)
T KOG0772|consen  313 --AGGKRVPVTSCAWN-RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD------GNYLLSRG  383 (641)
T ss_pred             --CCCcccCceeeecC-CCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc------cchhhhcc
Confidence              45677789999999 8999999999999999999865444333 33457877  8999999999      89999999


Q ss_pred             CCCeEEEEEeeC-CCceEEEeec--CCceEEEEECCCCCcEEEEEec------CCEEEEEeCCCCCCCcceEEeecCCCC
Q psy17342        290 YDWSVKLWNIKE-NKPVHSFNEF--RDYVMDVQWSPINPALFATVEV------AGRVDLWNLNLDTEVPATSAIVEGAPA  360 (401)
Q Consensus       290 ~d~~i~iwd~~~-~~~~~~~~~~--~~~v~~v~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~  360 (401)
                      .|+++++||++. .+++....+-  ..+-+.++|||+.+ ++++|..      .|.+.+||..+...+..+..   ....
T Consensus       384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i---~~aS  459 (641)
T KOG0772|consen  384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI---STAS  459 (641)
T ss_pred             CCCceeeeeccccccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEecC---CCce
Confidence            999999999987 4566665542  23457899999997 7888753      47899999988776655543   2667


Q ss_pred             eEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342        361 LSRVTWTPNGTQLCVGDEKGAITMFDV  387 (401)
Q Consensus       361 v~~~~~s~~g~~l~~~~~dg~v~iw~~  387 (401)
                      |..+.|+|.-+.|++|+.||.+++|-=
T Consensus       460 vv~~~WhpkLNQi~~gsgdG~~~vyYd  486 (641)
T KOG0772|consen  460 VVRCLWHPKLNQIFAGSGDGTAHVYYD  486 (641)
T ss_pred             EEEEeecchhhheeeecCCCceEEEEC
Confidence            899999999999999999999998743

>KOG0275|consensus

Probab=100.00  E-value=2.7e-33  Score=221.36  Aligned_cols=286  Identities=17%  Similarity=0.259  Sum_probs=240.2

Q ss_pred             cccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE-------ecCCCeeEEEEeCCCCceE
Q psy17342         62 WSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF-------FCQSPVLSCCFAKFNPYLI  134 (401)
Q Consensus        62 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l  134 (401)
                      ++.+.-+.|..|+|||++|++++          .||-|.+|+..+++....+.+       -+..+|.|+.|+.|. ..+
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgS----------vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMl  278 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGS----------VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EML  278 (508)
T ss_pred             cccccchhheeeCCCCceEeecc----------ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHh
Confidence            34556799999999999999999          799999999998876554432       247899999999976 799


Q ss_pred             EEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccccc
Q psy17342        135 LGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNN  214 (401)
Q Consensus       135 ~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~  214 (401)
                      ++|+.||.|++|.+.++.+...+.     ..|...|+++.|  +.++..+++++.|.++++.-+..+....   +     
T Consensus       279 AsGsqDGkIKvWri~tG~ClRrFd-----rAHtkGvt~l~F--SrD~SqiLS~sfD~tvRiHGlKSGK~LK---E-----  343 (508)
T KOG0275|consen  279 ASGSQDGKIKVWRIETGQCLRRFD-----RAHTKGVTCLSF--SRDNSQILSASFDQTVRIHGLKSGKCLK---E-----  343 (508)
T ss_pred             hccCcCCcEEEEEEecchHHHHhh-----hhhccCeeEEEE--ccCcchhhcccccceEEEeccccchhHH---H-----
Confidence            999999999999999998764322     489999999999  9999999999999999999887632221   2     


Q ss_pred             ccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec--CCCCceeeeecCccCCCCCCCcEEEEEeCCC
Q psy17342        215 KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE--GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW  292 (401)
Q Consensus       215 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~  292 (401)
                      +.+|..-|+...|. +++..+++++.||.|++|+..  +..++.+|+  +...+|+++..-|.+     ...++.|...+
T Consensus       344 frGHsSyvn~a~ft-~dG~~iisaSsDgtvkvW~~K--tteC~~Tfk~~~~d~~vnsv~~~PKn-----peh~iVCNrsn  415 (508)
T KOG0275|consen  344 FRGHSSYVNEATFT-DDGHHIISASSDGTVKVWHGK--TTECLSTFKPLGTDYPVNSVILLPKN-----PEHFIVCNRSN  415 (508)
T ss_pred             hcCccccccceEEc-CCCCeEEEecCCccEEEecCc--chhhhhhccCCCCcccceeEEEcCCC-----CceEEEEcCCC
Confidence            45699999999999 899999999999999999987  444666665  456688999888876     78899999999


Q ss_pred             eEEEEEeeCCCceEEEee---cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC
Q psy17342        293 SVKLWNIKENKPVHSFNE---FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN  369 (401)
Q Consensus       293 ~i~iwd~~~~~~~~~~~~---~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  369 (401)
                      +|.|-++. |+.+++|..   ..+...+.+.+|.|. ++++.++|+.++.+...+++....+.   -|...+..++-+|.
T Consensus       416 tv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGe-wiYcigED~vlYCF~~~sG~LE~tl~---VhEkdvIGl~HHPH  490 (508)
T KOG0275|consen  416 TVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGE-WIYCIGEDGVLYCFSVLSGKLERTLP---VHEKDVIGLTHHPH  490 (508)
T ss_pred             eEEEEecc-ceEEeeeccCCccCCceEEEEecCCCc-EEEEEccCcEEEEEEeecCceeeeee---cccccccccccCcc
Confidence            99999985 788888764   345667788999998 78888999999999999998766654   45666788999999


Q ss_pred             CcEEEEEecCCcEEEEE
Q psy17342        370 GTQLCVGDEKGAITMFD  386 (401)
Q Consensus       370 g~~l~~~~~dg~v~iw~  386 (401)
                      .+.||+-+.||.+++|.
T Consensus       491 qNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  491 QNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cchhhhhcccchhhhcC
Confidence            99999999999999995

>KOG0641|consensus

Probab=100.00  E-value=7.8e-30  Score=191.95  Aligned_cols=306  Identities=14%  Similarity=0.165  Sum_probs=229.0

Q ss_pred             CCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcC----------CCCCceE--
Q psy17342         46 KSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKF----------KKTTPEF--  113 (401)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~----------~~~~~~~--  113 (401)
                      ++.+.+...+.+.+     ..+|.+++|+|.|...++++          ...+++|.....          .+..+..  
T Consensus        18 ~~k~~f~~i~~l~d-----sqairav~fhp~g~lyavgs----------nskt~ric~yp~l~~~r~~hea~~~pp~v~~   82 (350)
T KOG0641|consen   18 KEKKHFEAINILED-----SQAIRAVAFHPAGGLYAVGS----------NSKTFRICAYPALIDLRHAHEAAKQPPSVLC   82 (350)
T ss_pred             ccccceEEEEEecc-----hhheeeEEecCCCceEEecc----------CCceEEEEccccccCcccccccccCCCeEEe
Confidence            34444444444433     37899999999999999888          678888875431          1111122  


Q ss_pred             --EEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC--ceEEEEEeC
Q psy17342        114 --EFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN--AHNLISISN  189 (401)
Q Consensus       114 --~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~  189 (401)
                        ..+|.+.|+|.+|+|.| .++++|+.|.+|++..++........ ..+.+..|.+.|..++|...|.  +..|++++.
T Consensus        83 kr~khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~g-~dle~nmhdgtirdl~fld~~~s~~~il~s~ga  160 (350)
T KOG0641|consen   83 KRNKHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNATG-HDLEFNMHDGTIRDLAFLDDPESGGAILASAGA  160 (350)
T ss_pred             eeccccCccEEEEEecCcc-CeEEecCCCceEEEEecccccccccC-cceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence              23478999999999988 79999999999999988765543222 2256788999999999975333  455666543


Q ss_pred             -CCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC------
Q psy17342        190 -DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG------  262 (401)
Q Consensus       190 -dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~------  262 (401)
                       |..|.+-|...   .+....     +.+|...|.++- + -++-.+++|+.|..|++||++-+.  ++.++..      
T Consensus       161 gdc~iy~tdc~~---g~~~~a-----~sghtghilaly-s-wn~~m~~sgsqdktirfwdlrv~~--~v~~l~~~~~~~g  228 (350)
T KOG0641|consen  161 GDCKIYITDCGR---GQGFHA-----LSGHTGHILALY-S-WNGAMFASGSQDKTIRFWDLRVNS--CVNTLDNDFHDGG  228 (350)
T ss_pred             CcceEEEeecCC---CCccee-----ecCCcccEEEEE-E-ecCcEEEccCCCceEEEEeeeccc--eeeeccCcccCCC
Confidence             55555555543   222222     455888888773 2 358899999999999999998443  4444431      


Q ss_pred             -CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEe
Q psy17342        263 -HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN  341 (401)
Q Consensus       263 -~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd  341 (401)
                       ....|.+++..|.      +++|++|-.|....+||++.+++++.+..|...|.++.|+|... ++.++++|..|++-|
T Consensus       229 lessavaav~vdps------grll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~-yllt~syd~~ikltd  301 (350)
T KOG0641|consen  229 LESSAVAAVAVDPS------GRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH-YLLTCSYDMKIKLTD  301 (350)
T ss_pred             cccceeEEEEECCC------cceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCce-EEEEecccceEEEee
Confidence             2357899999999      89999999999999999999999999999999999999999885 899999999999999


Q ss_pred             CCCCC--CCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEec
Q psy17342        342 LNLDT--EVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       342 ~~~~~--~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~  388 (401)
                      +...-  +++... ...|...+..+.|+|..-.+++.+.|.++.+|-++
T Consensus       302 lqgdla~el~~~v-v~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  302 LQGDLAHELPIMV-VAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             cccchhhcCceEE-EEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            97532  222222 23567778889999999889999999999999764

>KOG0643|consensus

Probab=100.00  E-value=3.2e-32  Score=209.44  Aligned_cols=293  Identities=15%  Similarity=0.202  Sum_probs=234.5

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      +|.++++.+.|+.+|.+|++++          .|.++.||-..+++.+.++. +|.+.|.|+...-+. ..+++|+.|.+
T Consensus         8 GHERplTqiKyN~eGDLlFsca----------KD~~~~vw~s~nGerlGty~-GHtGavW~~Did~~s-~~liTGSAD~t   75 (327)
T KOG0643|consen    8 GHERPLTQIKYNREGDLLFSCA----------KDSTPTVWYSLNGERLGTYD-GHTGAVWCCDIDWDS-KHLITGSADQT   75 (327)
T ss_pred             cCccccceEEecCCCcEEEEec----------CCCCceEEEecCCceeeeec-CCCceEEEEEecCCc-ceeeeccccce
Confidence            5889999999999999999999          89999999987788777664 579999999998866 78999999999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC-----CcEEEeeccCCCC----Cccccccccc
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND-----GRLCSWSLEMLSS----PQETRDLQYN  213 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~----~~~~~~~~~~  213 (401)
                      +++||+.+++....       -....+|..+.|  +.++++++.+..+     +.|.++|++....    .....++   
T Consensus        76 ~kLWDv~tGk~la~-------~k~~~~Vk~~~F--~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI---  143 (327)
T KOG0643|consen   76 AKLWDVETGKQLAT-------WKTNSPVKRVDF--SFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI---  143 (327)
T ss_pred             eEEEEcCCCcEEEE-------eecCCeeEEEee--ccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe---
Confidence            99999999987543       245678999999  8899888877553     5699999985331    1112233   


Q ss_pred             cccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCe
Q psy17342        214 NKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWS  293 (401)
Q Consensus       214 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~  293 (401)
                        ..+...++.+-|. +-++.|++|.++|.|..||.++.. +.+..-+.|...|+.+.++|+      ..+|++++.|.+
T Consensus       144 --~t~~skit~a~Wg-~l~~~ii~Ghe~G~is~~da~~g~-~~v~s~~~h~~~Ind~q~s~d------~T~FiT~s~Dtt  213 (327)
T KOG0643|consen  144 --PTPDSKITSALWG-PLGETIIAGHEDGSISIYDARTGK-ELVDSDEEHSSKINDLQFSRD------RTYFITGSKDTT  213 (327)
T ss_pred             --cCCccceeeeeec-ccCCEEEEecCCCcEEEEEcccCc-eeeechhhhccccccccccCC------cceEEecccCcc
Confidence              2366889999999 899999999999999999998543 355666789999999999999      799999999999


Q ss_pred             EEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCC-EEEEEeCCCCCCCcc---------eEEeecCCCCeEE
Q psy17342        294 VKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAG-RVDLWNLNLDTEVPA---------TSAIVEGAPALSR  363 (401)
Q Consensus       294 i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~---------~~~~~~~~~~v~~  363 (401)
                      .++||.++-+.++++.. ..+|++.+++|....+++.|+.+- .|.-=+.+.++....         +....+|=++|++
T Consensus       214 akl~D~~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINs  292 (327)
T KOG0643|consen  214 AKLVDVRTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINS  292 (327)
T ss_pred             ceeeeccceeeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcce
Confidence            99999999999999987 789999999998875555555432 122222233322211         1222367789999


Q ss_pred             EEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        364 VTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       364 ~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      ++|+|+|+..++|+.||.|++..+...
T Consensus       293 vAfhPdGksYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  293 VAFHPDGKSYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             eEECCCCcccccCCCCceEEEEEeccc
Confidence            999999999999999999999887654

>KOG0283|consensus

Probab=100.00  E-value=8.3e-32  Score=238.12  Aligned_cols=291  Identities=15%  Similarity=0.149  Sum_probs=208.4

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEec----------CCCeeEEEEeC---C
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC----------QSPVLSCCFAK---F  129 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~----------~~~v~~~~~~~---~  129 (401)
                      .|+++|+++.||+||++||+||          .|+.|+||.+...+.. ......          .+.+..+.-++   .
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaG----------eD~virVWkVie~e~~-~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~  333 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAG----------EDGVIRVWKVIESERM-RVAEGDSSCMYFEYNANSQIEPSTSSEEKIS  333 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecC----------CCceEEEEEEeccchh-cccccccchhhhhhhhccccCcccccccccc
Confidence            6899999999999999999999          8999999998752221 111100          01111111111   0


Q ss_pred             CC-ceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccc
Q psy17342        130 NP-YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETR  208 (401)
Q Consensus       130 ~~-~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~  208 (401)
                      +. ...-.+..... .+.+.....  ...+....+.+|.+.|.+|.|  + ..++|++++.|.+|++|++.. ..+... 
T Consensus       334 ~~~s~~~~~~~s~~-~~~p~~~f~--f~ekP~~ef~GHt~DILDlSW--S-Kn~fLLSSSMDKTVRLWh~~~-~~CL~~-  405 (712)
T KOG0283|consen  334 SRTSSSRKGSQSPC-VLLPLKAFV--FSEKPFCEFKGHTADILDLSW--S-KNNFLLSSSMDKTVRLWHPGR-KECLKV-  405 (712)
T ss_pred             ccccccccccCCcc-ccCCCcccc--ccccchhhhhccchhheeccc--c-cCCeeEeccccccEEeecCCC-cceeeE-
Confidence            00 01112222222 111111111  011112356899999999999  4 556899999999999999974 222222 


Q ss_pred             ccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEE
Q psy17342        209 DLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS  288 (401)
Q Consensus       209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~  288 (401)
                             ..|..-|+|++|+|-|.++|++|+-||.|++|++...+   +..+..-..-|++++|.|+      |+..+.|
T Consensus       406 -------F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~---Vv~W~Dl~~lITAvcy~Pd------Gk~avIG  469 (712)
T KOG0283|consen  406 -------FSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK---VVDWNDLRDLITAVCYSPD------GKGAVIG  469 (712)
T ss_pred             -------EecCCeeEEEEecccCCCcEeecccccceEEeecCcCe---eEeehhhhhhheeEEeccC------CceEEEE
Confidence                   23889999999999999999999999999999997543   4444445588999999999      8999999


Q ss_pred             eCCCeEEEEEeeCCCceEEEee--c------CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCC
Q psy17342        289 SYDWSVKLWNIKENKPVHSFNE--F------RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPA  360 (401)
Q Consensus       289 ~~d~~i~iwd~~~~~~~~~~~~--~------~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  360 (401)
                      +.+|.+++|+....+.+..+..  |      ...|++++|.|....-+++.+.|..|||||.+....+..++....... 
T Consensus       470 t~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S-  548 (712)
T KOG0283|consen  470 TFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS-  548 (712)
T ss_pred             EeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc-
Confidence            9999999999988776665542  1      227999999987765566677899999999988887777765433333 


Q ss_pred             eEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        361 LSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       361 v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      -...+|+.||++|+++++|..|++|+...
T Consensus       549 Q~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  549 QISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             ceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            34678999999999999999999999854

>KOG1446|consensus

Probab=100.00  E-value=3.3e-30  Score=203.41  Aligned_cols=285  Identities=15%  Similarity=0.175  Sum_probs=230.0

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEec--CCe
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTY--SGQ  142 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~--dg~  142 (401)
                      ...|.++.|+++|..|++++          .|.+++|||..+++.+..+.- +.-.+..++|.... +.++.++.  |.+
T Consensus        14 ~~~i~sl~fs~~G~~litss----------~dDsl~LYd~~~g~~~~ti~s-kkyG~~~~~Fth~~-~~~i~sStk~d~t   81 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSS----------EDDSLRLYDSLSGKQVKTINS-KKYGVDLACFTHHS-NTVIHSSTKEDDT   81 (311)
T ss_pred             CCceeEEEecCCCCEEEEec----------CCCeEEEEEcCCCceeeEeec-ccccccEEEEecCC-ceEEEccCCCCCc
Confidence            37799999999999999988          788999999998877654432 34567888887655 44555555  789


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      |+..++.+++..      ..+.+|...|.+++.  +|-++.+++++.|++|++||++. .+++..+.+.         .-
T Consensus        82 IryLsl~dNkyl------RYF~GH~~~V~sL~~--sP~~d~FlS~S~D~tvrLWDlR~-~~cqg~l~~~---------~~  143 (311)
T KOG1446|consen   82 IRYLSLHDNKYL------RYFPGHKKRVNSLSV--SPKDDTFLSSSLDKTVRLWDLRV-KKCQGLLNLS---------GR  143 (311)
T ss_pred             eEEEEeecCceE------EEcCCCCceEEEEEe--cCCCCeEEecccCCeEEeeEecC-CCCceEEecC---------CC
Confidence            999999988765      346899999999999  89999999999999999999985 3333333322         33


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC---CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG---HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      ...+|. |.|-++|++.....|++||++.....+..++.-   .....+.+.|+|+      |++++.+...+.+.+.|.
T Consensus       144 pi~AfD-p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d------GK~iLlsT~~s~~~~lDA  216 (311)
T KOG1446|consen  144 PIAAFD-PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD------GKSILLSTNASFIYLLDA  216 (311)
T ss_pred             cceeEC-CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC------CCEEEEEeCCCcEEEEEc
Confidence            456888 899999999998899999999876666666553   3677899999999      899999999999999999


Q ss_pred             eCCCceEEEeecCCce---EEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEE
Q psy17342        300 KENKPVHSFNEFRDYV---MDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVG  376 (401)
Q Consensus       300 ~~~~~~~~~~~~~~~v---~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  376 (401)
                      -.|..+.++..+...-   .+.+|+|+++ ++.+|+.||+|.+|+++++..+..+..  .+..++.++.|+|...+++++
T Consensus       217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg~~v~~~~~--~~~~~~~~~~fnP~~~mf~sa  293 (311)
T KOG1446|consen  217 FDGTVKSTFSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLETGKKVAVLRG--PNGGPVSCVRFNPRYAMFVSA  293 (311)
T ss_pred             cCCcEeeeEeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcCCCcEeeEecC--CCCCCccccccCCceeeeeec
Confidence            9999999998765433   5789999998 889999999999999999987776653  256788999999998888777


Q ss_pred             ecCCcEEEEEeccCc
Q psy17342        377 DEKGAITMFDVGEVG  391 (401)
Q Consensus       377 ~~dg~v~iw~~~~~~  391 (401)
                      +.  .+.+|=....+
T Consensus       294 ~s--~l~fw~p~~~~  306 (311)
T KOG1446|consen  294 SS--NLVFWLPDEDA  306 (311)
T ss_pred             Cc--eEEEEeccccc
Confidence            64  58888766543

>KOG0299|consensus

Probab=100.00  E-value=7.2e-31  Score=216.55  Aligned_cols=287  Identities=17%  Similarity=0.221  Sum_probs=231.2

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC----ce------------EE-EecCCCeeEEE
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT----PE------------FE-FFCQSPVLSCC  125 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~----~~------------~~-~~~~~~v~~~~  125 (401)
                      .|..+|.+++++|++++.++++          .+++|.-|++.+++..    +.            .. -.|...+.+++
T Consensus       140 ~H~~s~~~vals~d~~~~fsas----------k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~a  209 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDDKRVFSAS----------KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLA  209 (479)
T ss_pred             cccCcceEEEeeccccceeecC----------CCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEE
Confidence            5889999999999999999999          8999999999876533    11            00 14567899999


Q ss_pred             EeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCc
Q psy17342        126 FAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQ  205 (401)
Q Consensus       126 ~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~  205 (401)
                      .++|+ ++|++|..|..|.||+.++.+...      .+.+|.+.|.+++|  ......+++++.|+++++|+++...   
T Consensus       210 vS~Dg-kylatgg~d~~v~Iw~~~t~ehv~------~~~ghr~~V~~L~f--r~gt~~lys~s~Drsvkvw~~~~~s---  277 (479)
T KOG0299|consen  210 VSSDG-KYLATGGRDRHVQIWDCDTLEHVK------VFKGHRGAVSSLAF--RKGTSELYSASADRSVKVWSIDQLS---  277 (479)
T ss_pred             EcCCC-cEEEecCCCceEEEecCcccchhh------cccccccceeeeee--ecCccceeeeecCCceEEEehhHhH---
Confidence            99988 899999999999999999987642      35899999999999  6677789999999999999997422   


Q ss_pred             cccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEE
Q psy17342        206 ETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLY  285 (401)
Q Consensus       206 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l  285 (401)
                      ....     +.+|...|..+... ..+..+.+|+.|+++++|.+...   ....|.+|.+.+-|++|-.+       ..|
T Consensus       278 ~vet-----lyGHqd~v~~IdaL-~reR~vtVGgrDrT~rlwKi~ee---sqlifrg~~~sidcv~~In~-------~Hf  341 (479)
T KOG0299|consen  278 YVET-----LYGHQDGVLGIDAL-SRERCVTVGGRDRTVRLWKIPEE---SQLIFRGGEGSIDCVAFIND-------EHF  341 (479)
T ss_pred             HHHH-----HhCCccceeeechh-cccceEEeccccceeEEEecccc---ceeeeeCCCCCeeeEEEecc-------cce
Confidence            1111     45699999999988 77888888999999999999533   34578899999999999875       799


Q ss_pred             EEEeCCCeEEEEEeeCCCceEEEee-c-----------CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEE
Q psy17342        286 LTSSYDWSVKLWNIKENKPVHSFNE-F-----------RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSA  353 (401)
Q Consensus       286 ~s~~~d~~i~iwd~~~~~~~~~~~~-~-----------~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  353 (401)
                      ++|+.+|.|.+|++.+.+++++... |           +.+|++++..|... ++|+|+.+|.|++|-+..+-..-.+-.
T Consensus       342 vsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r~i~~l~  420 (479)
T KOG0299|consen  342 VSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLRAINLLY  420 (479)
T ss_pred             eeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCccccceee
Confidence            9999999999999999999887652 1           23899999999987 999999999999999988733222222


Q ss_pred             eecCCCCeEEEEecCCCcEEEEE-ecCCcEEEEEec
Q psy17342        354 IVEGAPALSRVTWTPNGTQLCVG-DEKGAITMFDVG  388 (401)
Q Consensus       354 ~~~~~~~v~~~~~s~~g~~l~~~-~~dg~v~iw~~~  388 (401)
                      ...-.+.|++++|+++|+.|++| +....+--|-..
T Consensus       421 ~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  421 SLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             ecccccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence            23446789999999999977666 444445455443

>KOG0296|consensus

Probab=100.00  E-value=4.3e-31  Score=211.74  Aligned_cols=250  Identities=18%  Similarity=0.233  Sum_probs=204.7

Q ss_pred             EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEE
Q psy17342        115 FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLC  194 (401)
Q Consensus       115 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~  194 (401)
                      ..|..+|.+++.+| +.+++++|+.|..-.+|++.++...      ..+.+|+..|.++.|  +.++.+|++|..+|.|+
T Consensus        61 ~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~------~eltgHKDSVt~~~F--shdgtlLATGdmsG~v~  131 (399)
T KOG0296|consen   61 DKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFA------GELTGHKDSVTCCSF--SHDGTLLATGDMSGKVL  131 (399)
T ss_pred             hhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcce------eEecCCCCceEEEEE--ccCceEEEecCCCccEE
Confidence            35799999999999 5589999999999999999998843      446799999999999  99999999999999999


Q ss_pred             EeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCc
Q psy17342        195 SWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR  274 (401)
Q Consensus       195 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  274 (401)
                      +|+..+......   +.     .....+.-+.|+ |.+..|++|+.||.+.+|.+.+.  ...+.+.||..++++=.|.|
T Consensus       132 v~~~stg~~~~~---~~-----~e~~dieWl~WH-p~a~illAG~~DGsvWmw~ip~~--~~~kv~~Gh~~~ct~G~f~p  200 (399)
T KOG0296|consen  132 VFKVSTGGEQWK---LD-----QEVEDIEWLKWH-PRAHILLAGSTDGSVWMWQIPSQ--ALCKVMSGHNSPCTCGEFIP  200 (399)
T ss_pred             EEEcccCceEEE---ee-----cccCceEEEEec-ccccEEEeecCCCcEEEEECCCc--ceeeEecCCCCCcccccccC
Confidence            999986332222   21     144578889999 79999999999999999999754  46788999999999999999


Q ss_pred             cCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee------c-------------------------------------
Q psy17342        275 AQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE------F-------------------------------------  311 (401)
Q Consensus       275 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~------~-------------------------------------  311 (401)
                      +      ++.++++..||+|++||..+++++..+..      +                                     
T Consensus       201 d------GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~  274 (399)
T KOG0296|consen  201 D------GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGT  274 (399)
T ss_pred             C------CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCC
Confidence            9      89999999999999999999988776651      0                                     


Q ss_pred             --------CCceEEE---EECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCC
Q psy17342        312 --------RDYVMDV---QWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG  380 (401)
Q Consensus       312 --------~~~v~~v---~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  380 (401)
                              ...+.++   .|+..-+ ++|+|+-||+|.|||+...+..    ....|..+|+.+.|-+ ..+|++++.+|
T Consensus       275 ~~~l~~~~e~~~esve~~~~ss~lp-L~A~G~vdG~i~iyD~a~~~~R----~~c~he~~V~~l~w~~-t~~l~t~c~~g  348 (399)
T KOG0296|consen  275 VPELKPSQEELDESVESIPSSSKLP-LAACGSVDGTIAIYDLAASTLR----HICEHEDGVTKLKWLN-TDYLLTACANG  348 (399)
T ss_pred             Cccccccchhhhhhhhhcccccccc-hhhcccccceEEEEecccchhh----eeccCCCceEEEEEcC-cchheeeccCc
Confidence                    0011122   2233334 7899999999999999875543    3357788899999988 78999999999


Q ss_pred             cEEEEEeccCccceeeee
Q psy17342        381 AITMFDVGEVGIACLKFI  398 (401)
Q Consensus       381 ~v~iw~~~~~~~~~l~~~  398 (401)
                      .|+.||.++|  +++.++
T Consensus       349 ~v~~wDaRtG--~l~~~y  364 (399)
T KOG0296|consen  349 KVRQWDARTG--QLKFTY  364 (399)
T ss_pred             eEEeeecccc--ceEEEE
Confidence            9999999999  455444

>KOG0274|consensus

Probab=100.00  E-value=2.2e-31  Score=237.93  Aligned_cols=278  Identities=16%  Similarity=0.248  Sum_probs=235.5

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQI  143 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v  143 (401)
                      +...+.+..|.  ..++++++          .+++|.+||..++..+..-..+|.+.|.++++.. +..++++|+.|.++
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s----------~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~  273 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGS----------DDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTE  273 (537)
T ss_pred             Ccchhhhheee--cCeEEecC----------CCceeEEeecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcE
Confidence            45778888888  34788888          7999999999988877765677899999999987 66899999999999


Q ss_pred             EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceE
Q psy17342        144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL  223 (401)
Q Consensus       144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (401)
                      ++||..++.+..      .+.+|...|.++..    ....+++|+.|.+|++|++..+. ....       ..+|..+|.
T Consensus       274 rvWd~~sg~C~~------~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~-~l~l-------~~~h~~~V~  335 (537)
T KOG0274|consen  274 RVWDCSTGECTH------SLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGA-CLNL-------LRGHTGPVN  335 (537)
T ss_pred             EeEecCCCcEEE------EecCCCceEEEEEc----cCceEeeccCCceEEEEeccCcc-eEEE-------eccccccEE
Confidence            999999998763      35799999999976    66788899999999999998421 1111       234889999


Q ss_pred             EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC-
Q psy17342        224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN-  302 (401)
Q Consensus       224 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-  302 (401)
                      ++..+   +.++++|+.|+.|.+|+..  ..+++..+.+|...|+++.+.+.       +.+++|+.|++|++||+++. 
T Consensus       336 ~v~~~---~~~lvsgs~d~~v~VW~~~--~~~cl~sl~gH~~~V~sl~~~~~-------~~~~Sgs~D~~IkvWdl~~~~  403 (537)
T KOG0274|consen  336 CVQLD---EPLLVSGSYDGTVKVWDPR--TGKCLKSLSGHTGRVYSLIVDSE-------NRLLSGSLDTTIKVWDLRTKR  403 (537)
T ss_pred             EEEec---CCEEEEEecCceEEEEEhh--hceeeeeecCCcceEEEEEecCc-------ceEEeeeeccceEeecCCchh
Confidence            99976   7899999999999999998  66689999999999999988752       79999999999999999999 


Q ss_pred             CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcE
Q psy17342        303 KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAI  382 (401)
Q Consensus       303 ~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  382 (401)
                      +++.++.+|..-+..+.+..  + +|++++.|+.|++||..+++.+..+...  +...|..+++.  ...+++++.||.+
T Consensus       404 ~c~~tl~~h~~~v~~l~~~~--~-~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--~~~~v~~l~~~--~~~il~s~~~~~~  476 (537)
T KOG0274|consen  404 KCIHTLQGHTSLVSSLLLRD--N-FLVSSSADGTIKLWDAEEGECLRTLEGR--HVGGVSALALG--KEEILCSSDDGSV  476 (537)
T ss_pred             hhhhhhcCCccccccccccc--c-eeEeccccccEEEeecccCceeeeeccC--CcccEEEeecC--cceEEEEecCCee
Confidence            99999999999887776554  3 7999999999999999999887776532  45778888776  5678899999999


Q ss_pred             EEEEeccCc
Q psy17342        383 TMFDVGEVG  391 (401)
Q Consensus       383 ~iw~~~~~~  391 (401)
                      ++||+++++
T Consensus       477 ~l~dl~~~~  485 (537)
T KOG0274|consen  477 KLWDLRSGT  485 (537)
T ss_pred             EEEecccCc
Confidence            999999984

>KOG0288|consensus

Probab=100.00  E-value=2.1e-32  Score=222.54  Aligned_cols=282  Identities=17%  Similarity=0.213  Sum_probs=225.2

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCce-EEEecCCCeeEEEEeCCCCceEEEEecCC
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE-FEFFCQSPVLSCCFAKFNPYLILGGTYSG  141 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~g~~dg  141 (401)
                      .|.+.|..+.|-++...|++++          .|..|++|++..++.... ...+..++|+++.|-+++ +.+++++.|+
T Consensus       173 ~h~gev~~v~~l~~sdtlatgg----------~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~-~~~iAas~d~  241 (459)
T KOG0288|consen  173 AHEGEVHDVEFLRNSDTLATGG----------SDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDN-KHVIAASNDK  241 (459)
T ss_pred             ccccccceeEEccCcchhhhcc----------hhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCC-ceEEeecCCC
Confidence            3778999999999988999999          799999999986552221 223456789999999988 5555667899


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccc
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA  221 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  221 (401)
                      .+++|+++..+..      .++.+|.+.|+++.|  ......+++|+.|.+|++||+.... +....-        ....
T Consensus       242 ~~r~Wnvd~~r~~------~TLsGHtdkVt~ak~--~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l--------~~S~  304 (459)
T KOG0288|consen  242 NLRLWNVDSLRLR------HTLSGHTDKVTAAKF--KLSHSRVVSGSADRTIKLWDLQKAY-CSKTVL--------PGSQ  304 (459)
T ss_pred             ceeeeeccchhhh------hhhcccccceeeehh--hccccceeeccccchhhhhhhhhhh-eecccc--------cccc
Confidence            9999999988765      346789999999999  5555569999999999999998622 222211        2234


Q ss_pred             eEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342        222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE  301 (401)
Q Consensus       222 v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  301 (401)
                      +..+..+   ...+++|-.|+.|++||.+...  +......+ +.|+++..+++      +..+.+++.|.++.+.|+++
T Consensus       305 cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~--~~~sv~~g-g~vtSl~ls~~------g~~lLsssRDdtl~viDlRt  372 (459)
T KOG0288|consen  305 CNDIVCS---ISDVISGHFDKKVRFWDIRSAD--KTRSVPLG-GRVTSLDLSMD------GLELLSSSRDDTLKVIDLRT  372 (459)
T ss_pred             ccceEec---ceeeeecccccceEEEeccCCc--eeeEeecC-cceeeEeeccC------CeEEeeecCCCceeeeeccc
Confidence            5555544   5678899999999999988543  55566655 48999999998      78888889999999999999


Q ss_pred             CCceEEEeec----CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEe
Q psy17342        302 NKPVHSFNEF----RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGD  377 (401)
Q Consensus       302 ~~~~~~~~~~----~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  377 (401)
                      ......+...    ....+.+.|||++. ++++||.||.|+||++.+++....+... .....|++++|+|.|..|++++
T Consensus       373 ~eI~~~~sA~g~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~tgKlE~~l~~s-~s~~aI~s~~W~~sG~~Llsad  450 (459)
T KOG0288|consen  373 KEIRQTFSAEGFKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFTGKLEKVLSLS-TSNAAITSLSWNPSGSGLLSAD  450 (459)
T ss_pred             ccEEEEeeccccccccccceeEECCCCc-eeeeccCCCcEEEEEccCceEEEEeccC-CCCcceEEEEEcCCCchhhccc
Confidence            8887777641    23488999999997 8999999999999999999877665532 2233799999999999999999


Q ss_pred             cCCcEEEEE
Q psy17342        378 EKGAITMFD  386 (401)
Q Consensus       378 ~dg~v~iw~  386 (401)
                      .++.+.+|.
T Consensus       451 k~~~v~lW~  459 (459)
T KOG0288|consen  451 KQKAVTLWT  459 (459)
T ss_pred             CCcceEecC
Confidence            999999993

>KOG0268|consensus

Probab=100.00  E-value=3.7e-32  Score=217.67  Aligned_cols=288  Identities=11%  Similarity=0.184  Sum_probs=225.9

Q ss_pred             eeccccccccceEEEEecCCC-CCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEE
Q psy17342         57 FFDEKWSKNRNVTYMDWSTQH-PELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLIL  135 (401)
Q Consensus        57 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  135 (401)
                      |....-+|.+.|.|++=+|.. ..+++|+          .||.|+|||+....+...+. .|.+.|..+++..   ..++
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs----------~DG~VkiWnlsqR~~~~~f~-AH~G~V~Gi~v~~---~~~~  123 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGS----------CDGEVKIWNLSQRECIRTFK-AHEGLVRGICVTQ---TSFF  123 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccc----------cCceEEEEehhhhhhhheee-cccCceeeEEecc---cceE
Confidence            333445699999999999987 6677777          79999999999766665554 4688999999976   3455


Q ss_pred             EEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccc
Q psy17342        136 GGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNK  215 (401)
Q Consensus       136 ~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  215 (401)
                      +++.|.+|+.|.++...        +....-...+..+.-  +..+..+++++.  .|.|||... ..|...+..     
T Consensus       124 tvgdDKtvK~wk~~~~p--------~~tilg~s~~~gIdh--~~~~~~FaTcGe--~i~IWD~~R-~~Pv~smsw-----  185 (433)
T KOG0268|consen  124 TVGDDKTVKQWKIDGPP--------LHTILGKSVYLGIDH--HRKNSVFATCGE--QIDIWDEQR-DNPVSSMSW-----  185 (433)
T ss_pred             EecCCcceeeeeccCCc--------ceeeecccccccccc--ccccccccccCc--eeeeccccc-CCccceeec-----
Confidence            66689999999988742        111233455666665  566778888886  599999875 345554443     


Q ss_pred             cCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEE
Q psy17342        216 QTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVK  295 (401)
Q Consensus       216 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~  295 (401)
                        ....|.++.|+|-....|+++..|+.|.+||++..+  ++.... -...-+.|+|+|.      .-.|++|++|..++
T Consensus       186 --G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~--Pl~KVi-~~mRTN~IswnPe------afnF~~a~ED~nlY  254 (433)
T KOG0268|consen  186 --GADSISSVKFNPVETSILASCASDRSIVLYDLRQAS--PLKKVI-LTMRTNTICWNPE------AFNFVAANEDHNLY  254 (433)
T ss_pred             --CCCceeEEecCCCcchheeeeccCCceEEEecccCC--ccceee-eeccccceecCcc------ccceeeccccccce
Confidence              335799999998788889999999999999998544  343332 2344578999996      78899999999999


Q ss_pred             EEEeeC-CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEE
Q psy17342        296 LWNIKE-NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLC  374 (401)
Q Consensus       296 iwd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  374 (401)
                      .||++. .+++..+.+|.+.|.+|+|||.|+ -|++||.|.+|+||..+.+.....+..  .--+.|.++.||.|.++++
T Consensus       255 ~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~-EfvsgsyDksIRIf~~~~~~SRdiYht--kRMq~V~~Vk~S~Dskyi~  331 (433)
T KOG0268|consen  255 TYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQ-EFVSGSYDKSIRIFPVNHGHSRDIYHT--KRMQHVFCVKYSMDSKYII  331 (433)
T ss_pred             ehhhhhhcccchhhcccceeEEEeccCCCcc-hhccccccceEEEeecCCCcchhhhhH--hhhheeeEEEEeccccEEE
Confidence            999987 568888999999999999999998 699999999999999987765443321  2235699999999999999


Q ss_pred             EEecCCcEEEEEeccC
Q psy17342        375 VGDEKGAITMFDVGEV  390 (401)
Q Consensus       375 ~~~~dg~v~iw~~~~~  390 (401)
                      +|++|+.|++|.-...
T Consensus       332 SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  332 SGSDDGNVRLWKAKAS  347 (433)
T ss_pred             ecCCCcceeeeecchh
Confidence            9999999999998765

>KOG1408|consensus

Probab=100.00  E-value=3.3e-30  Score=223.73  Aligned_cols=352  Identities=15%  Similarity=0.156  Sum_probs=248.7

Q ss_pred             hccccccccccccccccccCCCCCCCCcccccc--ccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEE
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQF--DMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLAS   84 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   84 (401)
                      ..+|+.|..+|+||+++.+.-.-+-.+|..-..  +...-.+..+.+      .......--...++.|+|....|.+.-
T Consensus       270 ~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~------s~~~~a~fPD~IA~~Fdet~~klscVY  343 (1080)
T KOG1408|consen  270 SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKN------SESSPAIFPDAIACQFDETTDKLSCVY  343 (1080)
T ss_pred             cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccc------cccCcccCCceeEEEecCCCceEEEEE
Confidence            457899999999999976544333333322211  111001111111      111111112255678999887777776


Q ss_pred             eccCCCCCCCCCcEEEEEeCcCCCCCce--EEEecCCCeeEEEEeCCC----------CceEEEEecCCeEEEEECCCCC
Q psy17342         85 YHRNKEAPNEPDGVCLIWNTKFKKTTPE--FEFFCQSPVLSCCFAKFN----------PYLILGGTYSGQIVLWDTRVQK  152 (401)
Q Consensus        85 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~----------~~~l~~g~~dg~v~iw~~~~~~  152 (401)
                                .|..++|||++.-+.+.+  ..+.|...|..+.--|.+          +..+++++.|++|++|++....
T Consensus       344 ----------ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ct  413 (1080)
T KOG1408|consen  344 ----------NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCT  413 (1080)
T ss_pred             ----------cCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccc
Confidence                      899999999986433322  224467777777665511          1258899999999999998633


Q ss_pred             CCceeec-------------------------------cccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCC
Q psy17342        153 KTPVHRT-------------------------------PLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEML  201 (401)
Q Consensus       153 ~~~~~~~-------------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~  201 (401)
                      ...+.+.                               ..+.......+++++.  +|++.+|++|..-|++++|++...
T Consensus       414 nn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~v--Sp~gqhLAsGDr~GnlrVy~Lq~l  491 (1080)
T KOG1408|consen  414 NNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAV--SPDGQHLASGDRGGNLRVYDLQEL  491 (1080)
T ss_pred             ccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEE--CCCcceecccCccCceEEEEehhh
Confidence            2111100                               0011223446899999  999999999999999999999752


Q ss_pred             CCCccccccccccccCCccceEEEEeccCC--CCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCC
Q psy17342        202 SSPQETRDLQYNNKQTKNLAVLSLAFPQND--VNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHI  279 (401)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  279 (401)
                         .....     ...|...|.|+.|+.|.  .++|++++.|..|++||... ...++.++.+|...|+++.|.-.....
T Consensus       492 ---~~~~~-----~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r-ny~l~qtld~HSssITsvKFa~~gln~  562 (1080)
T KOG1408|consen  492 ---EYTCF-----MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR-NYDLVQTLDGHSSSITSVKFACNGLNR  562 (1080)
T ss_pred             ---hhhhh-----eecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc-ccchhhhhcccccceeEEEEeecCCce
Confidence               22222     24499999999999554  46799999999999999753 223455555565555555443322000


Q ss_pred             -------C------------------------------------CCcEEEEEeCCCeEEEEEeeCCCceEEEee---cCC
Q psy17342        280 -------D------------------------------------FSHLYLTSSYDWSVKLWNIKENKPVHSFNE---FRD  313 (401)
Q Consensus       280 -------~------------------------------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~  313 (401)
                             |                                    ...++++++.|..|+|||+.+++..+.|++   |++
T Consensus       563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG  642 (1080)
T KOG1408|consen  563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG  642 (1080)
T ss_pred             EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence                   0                                    046899999999999999999999999986   667


Q ss_pred             ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       314 ~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      ....+...|.|- ++|+...|.++.++|+.+++.+...   .+|...|+.+.|.+|-+.|++.+.||.|.||.+..
T Consensus       643 ~lIKv~lDPSgi-Y~atScsdktl~~~Df~sgEcvA~m---~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  643 DLIKVILDPSGI-YLATSCSDKTLCFVDFVSGECVAQM---TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             ceEEEEECCCcc-EEEEeecCCceEEEEeccchhhhhh---cCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            888999999996 7899999999999999999988776   48899999999999999999999999999999865

>KOG1332|consensus

Probab=100.00  E-value=2.2e-31  Score=202.25  Aligned_cols=266  Identities=18%  Similarity=0.247  Sum_probs=205.6

Q ss_pred             EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEE
Q psy17342        115 FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLC  194 (401)
Q Consensus       115 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~  194 (401)
                      ..|...|..+...-.+ ..|++++.|++|+|+.++.......   ...+.+|.+||+.++|..+.-|..|++++.||.|.
T Consensus         8 t~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~~s~l---l~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNGQSKL---LAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCCCcee---eeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence            3456667666655545 6899999999999999987664211   24578999999999997666899999999999999


Q ss_pred             EeeccCCCCCccccccccccccCCccceEEEEeccCC-CCeEEEEcCCceEEEEeCCCC-CCCceeeecCCCCceeeeec
Q psy17342        195 SWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQND-VNNFVVGCEDGNVYSACRHGN-KAGNVECYEGHEGPVVGLSS  272 (401)
Q Consensus       195 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~~~~~~~~-~~~~~~~~~~~~~~v~~i~~  272 (401)
                      +|.-..+ +-.+..+     ...|...|++++|.|.+ +-.|++++.||.|.+.+.+.. .....+....|.-.|++++|
T Consensus        84 iWke~~g-~w~k~~e-----~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw  157 (299)
T KOG1332|consen   84 IWKEENG-RWTKAYE-----HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW  157 (299)
T ss_pred             EEecCCC-chhhhhh-----hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeee
Confidence            9997653 2233333     34599999999999654 456889999999999988765 22234456789999999999


Q ss_pred             CccCCC--------CCCCcEEEEEeCCCeEEEEEeeCC--CceEEEeecCCceEEEEECCCC---CcEEEEEecCCEEEE
Q psy17342        273 HRAQGH--------IDFSHLYLTSSYDWSVKLWNIKEN--KPVHSFNEFRDYVMDVQWSPIN---PALFATVEVAGRVDL  339 (401)
Q Consensus       273 ~~~~~~--------~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~v~~~~~~---~~~l~~~~~d~~i~i  339 (401)
                      .|....        .+....|++|+.|..|+||+..++  +...++.+|.+.|..++|.|.-   +..+|+++.||++.|
T Consensus       158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI  237 (299)
T KOG1332|consen  158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII  237 (299)
T ss_pred             cCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence            997321        111257999999999999999875  3445688999999999999974   457999999999999


Q ss_pred             EeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        340 WNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       340 wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      |..+.................++.++||+.|++|++++.|+.|.+|.-...
T Consensus       238 wt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  238 WTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             EEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence            988743232332222334678999999999999999999999999987654

>KOG1539|consensus

Probab=99.98  E-value=7.7e-30  Score=224.85  Aligned_cols=324  Identities=18%  Similarity=0.265  Sum_probs=249.9

Q ss_pred             hhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEe
Q psy17342          6 AGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASY   85 (401)
Q Consensus         6 ~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   85 (401)
                      .-+.|+.|+..|.+++|++..++.+-+.                     +       .+...|+++.=+|--.-++.|. 
T Consensus       171 YLNKIvvGs~~G~lql~Nvrt~K~v~~f---------------------~-------~~~s~IT~ieqsPaLDVVaiG~-  221 (910)
T KOG1539|consen  171 YLNKIVVGSSQGRLQLWNVRTGKVVYTF---------------------Q-------EFFSRITAIEQSPALDVVAIGL-  221 (910)
T ss_pred             heeeEEEeecCCcEEEEEeccCcEEEEe---------------------c-------ccccceeEeccCCcceEEEEec-
Confidence            4567899999999999999888733221                     1       2236699999999877777777 


Q ss_pred             ccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccC
Q psy17342         86 HRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMA  165 (401)
Q Consensus        86 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~  165 (401)
                               .+|+|.+++++.++.+..+... .+.|++++|..||..++++|+..|.+.+||++..+.....     ...
T Consensus       222 ---------~~G~ViifNlK~dkil~sFk~d-~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~-----~na  286 (910)
T KOG1539|consen  222 ---------ENGTVIIFNLKFDKILMSFKQD-WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVT-----RNA  286 (910)
T ss_pred             ---------cCceEEEEEcccCcEEEEEEcc-ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeee-----ecc
Confidence                     8999999999988777544332 5999999999999999999999999999999987765332     257


Q ss_pred             CCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcc---------------------------------------
Q psy17342        166 HTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQE---------------------------------------  206 (401)
Q Consensus       166 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~---------------------------------------  206 (401)
                      |.+.|....|  .+....+++++.|..+++|-.+++.....                                       
T Consensus       287 h~~sv~~~~f--l~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~  364 (910)
T KOG1539|consen  287 HYGSVTGATF--LPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSV  364 (910)
T ss_pred             ccCCccccee--cCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhh
Confidence            8888888888  67778888888888877774441110000                                       


Q ss_pred             ----------------------c-----ccccc--------------------------------------------ccc
Q psy17342        207 ----------------------T-----RDLQY--------------------------------------------NNK  215 (401)
Q Consensus       207 ----------------------~-----~~~~~--------------------------------------------~~~  215 (401)
                                            .     .+++.                                            ..+
T Consensus       365 ~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~  444 (910)
T KOG1539|consen  365 ISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRF  444 (910)
T ss_pred             hHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccc
Confidence                                  0     00000                                            001


Q ss_pred             cCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeee---cCCCCceeeeecCccCCCCCCCcEEEEEeCCC
Q psy17342        216 QTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY---EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW  292 (401)
Q Consensus       216 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~  292 (401)
                      ......+++++.+ +-|++.+.|+..|.|-+|++.+.  .....|   +.|.++|++++....      ++.+++++.+|
T Consensus       445 ~~~~~~~~av~vs-~CGNF~~IG~S~G~Id~fNmQSG--i~r~sf~~~~ah~~~V~gla~D~~------n~~~vsa~~~G  515 (910)
T KOG1539|consen  445 KKDDINATAVCVS-FCGNFVFIGYSKGTIDRFNMQSG--IHRKSFGDSPAHKGEVTGLAVDGT------NRLLVSAGADG  515 (910)
T ss_pred             cccCcceEEEEEe-ccCceEEEeccCCeEEEEEcccC--eeecccccCccccCceeEEEecCC------CceEEEccCcc
Confidence            1123567788888 78899999999999999999844  234455   479999999999887      68999999999


Q ss_pred             eEEEEEeeCCC-----------------------------------------ceEEEeecCCceEEEEECCCCCcEEEEE
Q psy17342        293 SVKLWNIKENK-----------------------------------------PVHSFNEFRDYVMDVQWSPINPALFATV  331 (401)
Q Consensus       293 ~i~iwd~~~~~-----------------------------------------~~~~~~~~~~~v~~v~~~~~~~~~l~~~  331 (401)
                      .+++||..+..                                         .++.|.+|...|++++|||+|+ .++++
T Consensus       516 ilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr-Wlisa  594 (910)
T KOG1539|consen  516 ILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR-WLISA  594 (910)
T ss_pred             eEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc-EEEEe
Confidence            99999987642                                         3445667999999999999998 78999


Q ss_pred             ecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC-CcEEEEEecc
Q psy17342        332 EVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK-GAITMFDVGE  389 (401)
Q Consensus       332 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-g~v~iw~~~~  389 (401)
                      +.|++|++||+.++..+..+.    -..+++++.|||+|.+||+...| .-|++|.=.+
T Consensus       595 smD~tIr~wDlpt~~lID~~~----vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  595 SMDSTIRTWDLPTGTLIDGLL----VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             ecCCcEEEEeccCcceeeeEe----cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence            999999999999988776653    36778999999999999999988 4599996443

>KOG0300|consensus

Probab=99.98  E-value=1.7e-30  Score=205.04  Aligned_cols=298  Identities=14%  Similarity=0.159  Sum_probs=243.7

Q ss_pred             ccccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEe
Q psy17342         59 DEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGT  138 (401)
Q Consensus        59 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~  138 (401)
                      .+-.+|++.|+.++-....+.+.+++          .|.+.+||.++++.++..+. +|.+.|++++|++.+ .++++++
T Consensus       142 re~~GHkDGiW~Vaa~~tqpi~gtAS----------ADhTA~iWs~Esg~CL~~Y~-GH~GSVNsikfh~s~-~L~lTaS  209 (481)
T KOG0300|consen  142 RELEGHKDGIWHVAADSTQPICGTAS----------ADHTARIWSLESGACLATYT-GHTGSVNSIKFHNSG-LLLLTAS  209 (481)
T ss_pred             hhhcccccceeeehhhcCCcceeecc----------cccceeEEeeccccceeeec-ccccceeeEEecccc-ceEEEcc
Confidence            34456899999999988888777777          89999999999999987764 569999999999966 8999999


Q ss_pred             cCCeEEEEEC------CCCCC---------------------------Cceeec-cccccCCCCcEEEEEEeecCCceEE
Q psy17342        139 YSGQIVLWDT------RVQKK---------------------------TPVHRT-PLSVMAHTHPVFCMSVIGTQNAHNL  184 (401)
Q Consensus       139 ~dg~v~iw~~------~~~~~---------------------------~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l  184 (401)
                      .|++-.||..      .....                           .+..+. .+.+.+|.+.|.+..|  -..++.+
T Consensus       210 GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dW--L~gg~Q~  287 (481)
T KOG0300|consen  210 GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDW--LAGGQQM  287 (481)
T ss_pred             CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhh--hcCccee
Confidence            9999999972      11000                           011111 2346789999999999  7899999


Q ss_pred             EEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCC
Q psy17342        185 ISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHE  264 (401)
Q Consensus       185 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~  264 (401)
                      ++++.|.+-.+||++++ .+...       +.+|....+.++-+ |..+++++.+.|...++||++ .....+..|+||.
T Consensus       288 vTaSWDRTAnlwDVEtg-e~v~~-------LtGHd~ELtHcstH-ptQrLVvTsSrDtTFRLWDFR-eaI~sV~VFQGHt  357 (481)
T KOG0300|consen  288 VTASWDRTANLWDVETG-EVVNI-------LTGHDSELTHCSTH-PTQRLVVTSSRDTTFRLWDFR-EAIQSVAVFQGHT  357 (481)
T ss_pred             eeeeccccceeeeeccC-ceecc-------ccCcchhccccccC-CcceEEEEeccCceeEeccch-hhcceeeeecccc
Confidence            99999999999999873 23222       56699999999999 788999999999999999998 3445678899999


Q ss_pred             CceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC-CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCC
Q psy17342        265 GPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN-KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       265 ~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~  343 (401)
                      ..|+++.|..+       ..+++|+.|.+|++||+++. .++.++.. ..+++.++.+..++ +++.-..+..|++||++
T Consensus       358 dtVTS~vF~~d-------d~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~-iIAiPhDNRqvRlfDln  428 (481)
T KOG0300|consen  358 DTVTSVVFNTD-------DRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHP-IIAIPHDNRQVRLFDLN  428 (481)
T ss_pred             cceeEEEEecC-------CceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCc-eEEeccCCceEEEEecC
Confidence            99999999885       78999999999999999874 57788876 78899999999887 88888888999999998


Q ss_pred             CCCCCcceE--EeecCCCCeEEEEecCCC--cEEEEEecCCcEEEEEeccC
Q psy17342        344 LDTEVPATS--AIVEGAPALSRVTWTPNG--TQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       344 ~~~~~~~~~--~~~~~~~~v~~~~~s~~g--~~l~~~~~dg~v~iw~~~~~  390 (401)
                      ..+. +.+.  ...+|...|++++|..+-  .-|++++.|..+.-|++...
T Consensus       429 G~Rl-aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  429 GNRL-ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             CCcc-ccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            6543 3332  224677889999998663  45889999999999999875

>PTZ00421 coronin; Provisional

Probab=99.98  E-value=1.4e-29  Score=226.16  Aligned_cols=257  Identities=14%  Similarity=0.166  Sum_probs=186.3

Q ss_pred             eeEEEEeCCCCceEEEEecCCeEEEEECCCCCCC-------ceeeccccccCCCCcEEEEEEeecC-CceEEEEEeCCCc
Q psy17342        121 VLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKT-------PVHRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISNDGR  192 (401)
Q Consensus       121 v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~  192 (401)
                      |.....++++. .+++++.+.....|+...+...       .....+..+.+|.+.|.+++|  +| ++.+|++++.|++
T Consensus        23 i~~~~~~~d~~-~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~f--sP~d~~~LaSgS~Dgt   99 (493)
T PTZ00421         23 VTPSTALWDCS-NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAF--NPFDPQKLFTASEDGT   99 (493)
T ss_pred             cccccccCCCC-CcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEE--cCCCCCEEEEEeCCCE
Confidence            44444455442 3344445555556654332210       000111235789999999999  77 7889999999999


Q ss_pred             EEEeeccCCCCCccc-cccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeee
Q psy17342        193 LCSWSLEMLSSPQET-RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLS  271 (401)
Q Consensus       193 i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~  271 (401)
                      |++||+......... ..+..  +.+|...|.+++|+|...++|++++.|+.|++||+...  ..+..+.+|...|.+++
T Consensus       100 IkIWdi~~~~~~~~~~~~l~~--L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg--~~~~~l~~h~~~V~sla  175 (493)
T PTZ00421        100 IMGWGIPEEGLTQNISDPIVH--LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG--KAVEVIKCHSDQITSLE  175 (493)
T ss_pred             EEEEecCCCccccccCcceEE--ecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC--eEEEEEcCCCCceEEEE
Confidence            999999753211110 01111  45689999999999545679999999999999999843  46778889999999999


Q ss_pred             cCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCc-eEEEEECCCCCcEEEEE---ecCCEEEEEeCCCCCC
Q psy17342        272 SHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDY-VMDVQWSPINPALFATV---EVAGRVDLWNLNLDTE  347 (401)
Q Consensus       272 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~v~~~~~~~~~l~~~---~~d~~i~iwd~~~~~~  347 (401)
                      |+|+      +.+|++++.|++|+|||+++++.+.++..|.+. +..+.|.+++..++++|   +.|+.|++||+++...
T Consensus       176 ~spd------G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~  249 (493)
T PTZ00421        176 WNLD------GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS  249 (493)
T ss_pred             EECC------CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence            9998      799999999999999999999999999888765 45788999887444444   2479999999987553


Q ss_pred             CcceEEeecCCCCeEEEEecCCCcEEEEEe-cCCcEEEEEeccCc
Q psy17342        348 VPATSAIVEGAPALSRVTWTPNGTQLCVGD-EKGAITMFDVGEVG  391 (401)
Q Consensus       348 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~v~iw~~~~~~  391 (401)
                      ... .........+....|++++++|++++ .|+.|++||+.+++
T Consensus       250 p~~-~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~  293 (493)
T PTZ00421        250 PYS-TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER  293 (493)
T ss_pred             cee-EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence            221 11122334566678999999999887 59999999999875

>KOG0301|consensus

Probab=99.98  E-value=8.6e-30  Score=220.25  Aligned_cols=278  Identities=18%  Similarity=0.295  Sum_probs=226.7

Q ss_pred             cccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-cCCCeeE-EEEeCCCCceEEEEec
Q psy17342         62 WSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-CQSPVLS-CCFAKFNPYLILGGTY  139 (401)
Q Consensus        62 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~-~~~~~~~~~~l~~g~~  139 (401)
                      .+|+..|..+++.+.. .+++++          +|+++++|+-..++.+....+. +.+-|.. ++|.+..+-.+++|+.
T Consensus        11 ~gH~~DVr~v~~~~~~-~i~s~s----------Rd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~   79 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTDGV-CIISGS----------RDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGM   79 (745)
T ss_pred             ccCccchheeEecCCe-EEeecC----------CCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecc
Confidence            3577889888887765 788888          7999999999876666644443 5566655 7887634346889999


Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                      |.++.+|........      ..+.+|...|.+++.  ..++. +++||.|.++++|......   ..       ..+|.
T Consensus        80 D~~i~v~~~~~~~P~------~~LkgH~snVC~ls~--~~~~~-~iSgSWD~TakvW~~~~l~---~~-------l~gH~  140 (745)
T KOG0301|consen   80 DTTIIVFKLSQAEPL------YTLKGHKSNVCSLSI--GEDGT-LISGSWDSTAKVWRIGELV---YS-------LQGHT  140 (745)
T ss_pred             cceEEEEecCCCCch------hhhhccccceeeeec--CCcCc-eEecccccceEEecchhhh---cc-------cCCcc
Confidence            999999999887754      457899999999987  55555 9999999999999876421   11       45699


Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      ..|++++.. ++. .+++|+.|..|++|.-.    ..+++|.+|.+.|+.+++-|.       ..|++++.||.|++|++
T Consensus       141 asVWAv~~l-~e~-~~vTgsaDKtIklWk~~----~~l~tf~gHtD~VRgL~vl~~-------~~flScsNDg~Ir~w~~  207 (745)
T KOG0301|consen  141 ASVWAVASL-PEN-TYVTGSADKTIKLWKGG----TLLKTFSGHTDCVRGLAVLDD-------SHFLSCSNDGSIRLWDL  207 (745)
T ss_pred             hheeeeeec-CCC-cEEeccCcceeeeccCC----chhhhhccchhheeeeEEecC-------CCeEeecCCceEEEEec
Confidence            999999998 444 99999999999999752    368899999999999999985       68999999999999999


Q ss_pred             eCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC
Q psy17342        300 KENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK  379 (401)
Q Consensus       300 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  379 (401)
                       ++..+.++.+|...|+++...++++ +++++++|++++||+..  ...+.+..   ....|+++.+-++|. |++|++|
T Consensus       208 -~ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~--e~~q~I~l---PttsiWsa~~L~NgD-Ivvg~SD  279 (745)
T KOG0301|consen  208 -DGEVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD--ECVQVITL---PTTSIWSAKVLLNGD-IVVGGSD  279 (745)
T ss_pred             -cCceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC--ceEEEEec---CccceEEEEEeeCCC-EEEeccC
Confidence             7899999999999999999777765 89999999999999987  44444432   234799999988887 6789999


Q ss_pred             CcEEEEEeccC
Q psy17342        380 GAITMFDVGEV  390 (401)
Q Consensus       380 g~v~iw~~~~~  390 (401)
                      |.|+||.....
T Consensus       280 G~VrVfT~~k~  290 (745)
T KOG0301|consen  280 GRVRVFTVDKD  290 (745)
T ss_pred             ceEEEEEeccc
Confidence            99999998743

>KOG1063|consensus

Probab=99.97  E-value=1.4e-29  Score=218.84  Aligned_cols=354  Identities=14%  Similarity=0.168  Sum_probs=254.8

Q ss_pred             cccccccccccccccccCCCCCCCCccccccccCCC-C--CCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEe
Q psy17342          9 SQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGD-E--KSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASY   85 (401)
Q Consensus         9 ~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   85 (401)
                      +++|++.|.+||||.+.-.................+ .  .....+...-.+..-..+|.+.|.++.|+|.+..|++++ 
T Consensus       208 ~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSAS-  286 (764)
T KOG1063|consen  208 LLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSAS-  286 (764)
T ss_pred             EEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecc-
Confidence            789999999999996543331111100000000000 0  001111211222233447999999999999998999999 


Q ss_pred             ccCCCCCCCCCcEEEEEeCcCCCCC--ceEEEe----cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeec
Q psy17342         86 HRNKEAPNEPDGVCLIWNTKFKKTT--PEFEFF----CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRT  159 (401)
Q Consensus        86 ~~~~~~~~~~d~~v~iwd~~~~~~~--~~~~~~----~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~  159 (401)
                               .|.++.+|...+...+  ....++    .........|+|++ +.+++-+..|-.++|.-.... ...+. 
T Consensus       287 ---------aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~-~~ii~~g~~Gg~hlWkt~d~~-~w~~~-  354 (764)
T KOG1063|consen  287 ---------ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS-NVIIAHGRTGGFHLWKTKDKT-FWTQE-  354 (764)
T ss_pred             ---------cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC-CEEEEecccCcEEEEeccCcc-ceeec-
Confidence                     8999999998754222  222222    24568899999977 677777789999999932211 11111 


Q ss_pred             cccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc
Q psy17342        160 PLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC  239 (401)
Q Consensus       160 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  239 (401)
                       ..+.+|.+.|.+++|  .|.|.+|++.+.|.+-+++-.-  ++.....++..  .+-|...++|+++- +....+++|.
T Consensus       355 -~~iSGH~~~V~dv~W--~psGeflLsvs~DQTTRlFa~w--g~q~~wHEiaR--PQiHGyDl~c~~~v-n~~~~FVSgA  426 (764)
T KOG1063|consen  355 -PVISGHVDGVKDVDW--DPSGEFLLSVSLDQTTRLFARW--GRQQEWHEIAR--PQIHGYDLTCLSFV-NEDLQFVSGA  426 (764)
T ss_pred             -cccccccccceeeee--cCCCCEEEEeccccceeeeccc--ccccceeeecc--cccccccceeeehc-cCCceeeecc
Confidence             235899999999999  9999999999999999998754  23333444444  45688899999998 5577888888


Q ss_pred             CCceEEEEeCCCC---------------C---------------------------------------------------
Q psy17342        240 EDGNVYSACRHGN---------------K---------------------------------------------------  253 (401)
Q Consensus       240 ~d~~i~~~~~~~~---------------~---------------------------------------------------  253 (401)
                      +...+|+|+....               .                                                   
T Consensus       427 dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~E  506 (764)
T KOG1063|consen  427 DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTE  506 (764)
T ss_pred             cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChH
Confidence            8888898764210               0                                                   


Q ss_pred             --------CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC-----CeEEEEEeeCCCceEEEeecCCceEEEEE
Q psy17342        254 --------AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD-----WSVKLWNIKENKPVHSFNEFRDYVMDVQW  320 (401)
Q Consensus       254 --------~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~v~~  320 (401)
                              -..++.+.||...|++++.+|+      ++++|+++..     ..|++|+..+-..++.+..|.-.|+.++|
T Consensus       507 dqLq~~tLwPEv~KLYGHGyEv~~l~~s~~------gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~F  580 (764)
T KOG1063|consen  507 DQLQQNTLWPEVHKLYGHGYEVYALAISPT------GNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAF  580 (764)
T ss_pred             HHHHHhccchhhHHhccCceeEEEEEecCC------CCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEE
Confidence                    0011234578889999999999      7999998764     36999999998888899999999999999


Q ss_pred             CCCCCcEEEEEecCCEEEEEeCCCCCCC-cceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        321 SPINPALFATVEVAGRVDLWNLNLDTEV-PATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       321 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      ||+++ +|++.+.|.++.+|........ ..+.....|..-|+++.|+|+++++++++.|.+|++|...+.
T Consensus       581 Spdg~-~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  581 SPDGR-YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             CCCCc-EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            99998 7899999999999988543221 122223467788999999999999999999999999999887

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=9.9e-29  Score=220.80  Aligned_cols=297  Identities=13%  Similarity=0.131  Sum_probs=206.4

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcC----------CCCC--ceEEEecCCCeeEEEEeCCCCce
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKF----------KKTT--PEFEFFCQSPVLSCCFAKFNPYL  133 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~----------~~~~--~~~~~~~~~~v~~~~~~~~~~~~  133 (401)
                      ..|.....++++..++++.          .+.....|+...          ++..  +....+|.+.|++++|+|.+.++
T Consensus        21 ~~i~~~~~~~d~~~~~~~n----------~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~   90 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACN----------DRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQK   90 (493)
T ss_pred             eccccccccCCCCCcEeEC----------CceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCE
Confidence            3456666777776777776          455555665432          2211  12345688999999999954479


Q ss_pred             EEEEecCCeEEEEECCCCCCCce-eeccccccCCCCcEEEEEEeecCCc-eEEEEEeCCCcEEEeeccCCCCCccccccc
Q psy17342        134 ILGGTYSGQIVLWDTRVQKKTPV-HRTPLSVMAHTHPVFCMSVIGTQNA-HNLISISNDGRLCSWSLEMLSSPQETRDLQ  211 (401)
Q Consensus       134 l~~g~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~  211 (401)
                      |++|+.|++|++||+........ ......+.+|...|.+++|  +|++ .+|++++.|++|++||++...   ....  
T Consensus        91 LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f--~P~~~~iLaSgs~DgtVrIWDl~tg~---~~~~--  163 (493)
T PTZ00421         91 LFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSF--HPSAMNVLASAGADMVVNVWDVERGK---AVEV--  163 (493)
T ss_pred             EEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEe--CcCCCCEEEEEeCCCEEEEEECCCCe---EEEE--
Confidence            99999999999999976532110 0111345789999999999  7765 689999999999999998532   1112  


Q ss_pred             cccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCce-eeeecCccCCCCCCCcEEEEEe-
Q psy17342        212 YNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPV-VGLSSHRAQGHIDFSHLYLTSS-  289 (401)
Q Consensus       212 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v-~~i~~~~~~~~~~~~~~l~s~~-  289 (401)
                         +..|...|.+++|+ +++.+|++++.|+.|++||++..  ..+..+.+|.+.+ ..+.|.|.      ...+++++ 
T Consensus       164 ---l~~h~~~V~sla~s-pdG~lLatgs~Dg~IrIwD~rsg--~~v~tl~~H~~~~~~~~~w~~~------~~~ivt~G~  231 (493)
T PTZ00421        164 ---IKCHSDQITSLEWN-LDGSLLCTTSKDKKLNIIDPRDG--TIVSSVEAHASAKSQRCLWAKR------KDLIITLGC  231 (493)
T ss_pred             ---EcCCCCceEEEEEE-CCCCEEEEecCCCEEEEEECCCC--cEEEEEecCCCCcceEEEEcCC------CCeEEEEec
Confidence               33478899999999 79999999999999999999843  4577788887653 46778887      45666544 


Q ss_pred             ---CCCeEEEEEeeCCC-ceEEEeec-CCceEEEEECCCCCcEEEEEe-cCCEEEEEeCCCCCCCcceEEeecCCCCeEE
Q psy17342        290 ---YDWSVKLWNIKENK-PVHSFNEF-RDYVMDVQWSPINPALFATVE-VAGRVDLWNLNLDTEVPATSAIVEGAPALSR  363 (401)
Q Consensus       290 ---~d~~i~iwd~~~~~-~~~~~~~~-~~~v~~v~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  363 (401)
                         .|+.|++||+++.. ++.....+ ...+....|++++. ++++++ .|+.|++||+.+++.....  ...+..++..
T Consensus       232 s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~~~~~~~~~--~~~s~~~~~g  308 (493)
T PTZ00421        232 SKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTN-LLYIGSKGEGNIRCFELMNERLTFCS--SYSSVEPHKG  308 (493)
T ss_pred             CCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCC-EEEEEEeCCCeEEEEEeeCCceEEEe--eccCCCCCcc
Confidence               47899999998754 44444332 34566678999997 566665 5999999999987654332  2344567788


Q ss_pred             EEecCCCcEEEEEecCCcEEEEEeccCccceee
Q psy17342        364 VTWTPNGTQLCVGDEKGAITMFDVGEVGIACLK  396 (401)
Q Consensus       364 ~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~  396 (401)
                      ++|.|....=+  ..--..++|.+....++++.
T Consensus       309 ~~~~pk~~~dv--~~~Ei~r~~~l~~~~i~pis  339 (493)
T PTZ00421        309 LCMMPKWSLDT--RKCEIARFYALTYHSLYTIQ  339 (493)
T ss_pred             eEecccccccc--cceeeeEEEEecCCeEEEEE
Confidence            88888632111  11123567777665544444

>KOG0305|consensus

Probab=99.97  E-value=5.2e-30  Score=220.93  Aligned_cols=245  Identities=20%  Similarity=0.273  Sum_probs=207.6

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIV  144 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~  144 (401)
                      ...|+++.|+++|.+|++|.          .+|.|.|||..+.+.++.+..+|...|-+++|+   ...+.+|+.++.|.
T Consensus       217 ~~~vtSv~ws~~G~~LavG~----------~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~  283 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGT----------SDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN---SSVLSSGSRDGKIL  283 (484)
T ss_pred             CCceEEEEECCCCCEEEEee----------cCCeEEEEehhhccccccccCCcCceeEEEecc---CceEEEecCCCcEE
Confidence            36799999999999999999          899999999998888888777689999999997   36899999999999


Q ss_pred             EEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342        145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS  224 (401)
Q Consensus       145 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (401)
                      .+|++..+....     .+.+|...|..++|  ++++.++++|+.|+.+.|||...   +.....+     ..|...|..
T Consensus       284 ~~dvR~~~~~~~-----~~~~H~qeVCgLkw--s~d~~~lASGgnDN~~~Iwd~~~---~~p~~~~-----~~H~aAVKA  348 (484)
T KOG0305|consen  284 NHDVRISQHVVS-----TLQGHRQEVCGLKW--SPDGNQLASGGNDNVVFIWDGLS---PEPKFTF-----TEHTAAVKA  348 (484)
T ss_pred             EEEEecchhhhh-----hhhcccceeeeeEE--CCCCCeeccCCCccceEeccCCC---ccccEEE-----eccceeeeE
Confidence            999998765421     25789999999999  99999999999999999999953   2333333     349999999


Q ss_pred             EEeccCCCCeEEEE--cCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe-CCCeEEEEEeeC
Q psy17342        225 LAFPQNDVNNFVVG--CEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS-YDWSVKLWNIKE  301 (401)
Q Consensus       225 ~~~~~~~~~~l~~~--~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~  301 (401)
                      ++|+|....+||+|  +.|+.|++||....  ..+.... -...|.+|.|++..     .+++.+-+ .+..|.||+..+
T Consensus       349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g--~~i~~vd-tgsQVcsL~Wsk~~-----kEi~sthG~s~n~i~lw~~ps  420 (484)
T KOG0305|consen  349 LAWCPWQSGLLATGGGSADRCIKFWNTNTG--ARIDSVD-TGSQVCSLIWSKKY-----KELLSTHGYSENQITLWKYPS  420 (484)
T ss_pred             eeeCCCccCceEEcCCCcccEEEEEEcCCC--cEecccc-cCCceeeEEEcCCC-----CEEEEecCCCCCcEEEEeccc
Confidence            99999889999987  56999999999843  3344433 56789999999985     45555443 377899999999


Q ss_pred             CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342        302 NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT  346 (401)
Q Consensus       302 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~  346 (401)
                      .+++..+.+|...|..++++|+|. .+++|+.|.++++|++-...
T Consensus       421 ~~~~~~l~gH~~RVl~la~SPdg~-~i~t~a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  421 MKLVAELLGHTSRVLYLALSPDGE-TIVTGAADETLRFWNLFDER  464 (484)
T ss_pred             cceeeeecCCcceeEEEEECCCCC-EEEEecccCcEEeccccCCC
Confidence            999999999999999999999997 78999999999999997643

>KOG1332|consensus

Probab=99.97  E-value=2.8e-30  Score=196.32  Aligned_cols=260  Identities=18%  Similarity=0.202  Sum_probs=205.5

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCC-Cce-EEEecCCCeeEEEEeC-CCCceEEEEec
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKT-TPE-FEFFCQSPVLSCCFAK-FNPYLILGGTY  139 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~-~~~-~~~~~~~~v~~~~~~~-~~~~~l~~g~~  139 (401)
                      .|++.|.++...-.|++|++++          +|++|+|+...++.. ... -+.+|.++|..++|.. .-..+||+++.
T Consensus         9 ~H~D~IHda~lDyygkrlATcs----------SD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsY   78 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCS----------SDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSY   78 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeec----------CCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeec
Confidence            4778899999989999999999          899999999986543 222 2345899999999964 33379999999


Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                      ||.|.||.-.+++-...    .....|...|++++|.|+.-|-.|++++.||.|.+.+.+..+.-.....     ...|.
T Consensus        79 DgkVIiWke~~g~w~k~----~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki-----~~aH~  149 (299)
T KOG1332|consen   79 DGKVIIWKEENGRWTKA----YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKI-----VFAHE  149 (299)
T ss_pred             CceEEEEecCCCchhhh----hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhh-----hhccc
Confidence            99999999988754322    3457899999999998888899999999999999999986422222211     34588


Q ss_pred             cceEEEEeccCC--C-----------CeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEE
Q psy17342        220 LAVLSLAFPQND--V-----------NNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL  286 (401)
Q Consensus       220 ~~v~~~~~~~~~--~-----------~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~  286 (401)
                      ..|++++|.|..  +           ..|++|+.|..|.+|......-.....+.+|.+.|+.++|.|..+-+  ..+++
T Consensus       150 ~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~--~s~iA  227 (299)
T KOG1332|consen  150 IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLP--KSTIA  227 (299)
T ss_pred             cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCC--ceeeE
Confidence            999999999642  2           46999999999999999876555566799999999999999986433  36899


Q ss_pred             EEeCCCeEEEEEeeCCC---ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        287 TSSYDWSVKLWNIKENK---PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       287 s~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      +++.||++.||..+...   ....++.....+..+.||+.|. +|+.++.|+.+.+|.-..
T Consensus       228 S~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  228 SCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             EecCCCcEEEEEecCccCcccccccccCCcceEEEEEecccc-EEEEecCCcEEEEEEeCC
Confidence            99999999999876321   1112233467899999999997 889888999999997554

>KOG0278|consensus

Probab=99.97  E-value=4.3e-31  Score=201.44  Aligned_cols=244  Identities=16%  Similarity=0.220  Sum_probs=204.2

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      +|+++|++...+.+...-++++          .|-+-+|||.-++..+..  +.|..-|.+++|+.|. +.|++|+.+..
T Consensus        57 ghkgavw~~~l~~na~~aasaa----------adftakvw~a~tgdelhs--f~hkhivk~~af~~ds-~~lltgg~ekl  123 (334)
T KOG0278|consen   57 GHKGAVWSATLNKNATRAASAA----------ADFTAKVWDAVTGDELHS--FEHKHIVKAVAFSQDS-NYLLTGGQEKL  123 (334)
T ss_pred             ccCcceeeeecCchhhhhhhhc----------ccchhhhhhhhhhhhhhh--hhhhheeeeEEecccc-hhhhccchHHH
Confidence            5779999999999887777777          799999999998887754  4678889999999976 78889999999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      ++|||++..+..     +..+.+|.+.|..+-|  ....+.|++++.|++|++||.+++ ...+.+.+        ..+|
T Consensus       124 lrvfdln~p~Ap-----p~E~~ghtg~Ir~v~w--c~eD~~iLSSadd~tVRLWD~rTg-t~v~sL~~--------~s~V  187 (334)
T KOG0278|consen  124 LRVFDLNRPKAP-----PKEISGHTGGIRTVLW--CHEDKCILSSADDKTVRLWDHRTG-TEVQSLEF--------NSPV  187 (334)
T ss_pred             hhhhhccCCCCC-----chhhcCCCCcceeEEE--eccCceEEeeccCCceEEEEeccC-cEEEEEec--------CCCC
Confidence            999999887654     2456899999999999  778888999999999999999873 33333333        3479


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN  302 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  302 (401)
                      +++.++ +++.++.++ ..+.|.+||....  .+++.+. -...|.+.+.+|.      ...+++|+.|..++.||..++
T Consensus       188 tSlEvs-~dG~ilTia-~gssV~Fwdaksf--~~lKs~k-~P~nV~SASL~P~------k~~fVaGged~~~~kfDy~Tg  256 (334)
T KOG0278|consen  188 TSLEVS-QDGRILTIA-YGSSVKFWDAKSF--GLLKSYK-MPCNVESASLHPK------KEFFVAGGEDFKVYKFDYNTG  256 (334)
T ss_pred             cceeec-cCCCEEEEe-cCceeEEeccccc--cceeecc-CccccccccccCC------CceEEecCcceEEEEEeccCC
Confidence            999999 788776655 4578999998743  3455554 3456889999999      689999999999999999999


Q ss_pred             CceEEE-eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC
Q psy17342        303 KPVHSF-NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE  347 (401)
Q Consensus       303 ~~~~~~-~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  347 (401)
                      ..+..+ ++|.++|.|+.|+|+|. +.++|++||+|+||....++.
T Consensus       257 eEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  257 EEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             ceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCCCc
Confidence            998886 88999999999999997 899999999999999876654

>KOG0973|consensus

Probab=99.97  E-value=9.7e-30  Score=230.86  Aligned_cols=296  Identities=13%  Similarity=0.167  Sum_probs=233.1

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcC--------CCCCce---EEEecCCCeeEEEEeCCCCceE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKF--------KKTTPE---FEFFCQSPVLSCCFAKFNPYLI  134 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~--------~~~~~~---~~~~~~~~v~~~~~~~~~~~~l  134 (401)
                      ..|.+++.+|+|..+++|+.        ..|+.++||+.+.        ...++.   ....|.+.|+|+.|+|+| .+|
T Consensus        14 ~~IfSIdv~pdg~~~aTgGq--------~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-~~l   84 (942)
T KOG0973|consen   14 KSIFSIDVHPDGVKFATGGQ--------VLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG-SYL   84 (942)
T ss_pred             eeEEEEEecCCceeEecCCc--------cccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC-CeE
Confidence            56999999999999999983        2488888998753        111121   223478999999999988 899


Q ss_pred             EEEecCCeEEEEECCCCC------------CCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCC
Q psy17342        135 LGGTYSGQIVLWDTRVQK------------KTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLS  202 (401)
Q Consensus       135 ~~g~~dg~v~iw~~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~  202 (401)
                      |+|+.|+.|.||+.....            .....+....+.+|...|..++|  +|++.+|++++.|++|.+|+..++ 
T Consensus        85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W--sp~~~~lvS~s~DnsViiwn~~tF-  161 (942)
T KOG0973|consen   85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW--SPDDSLLVSVSLDNSVIIWNAKTF-  161 (942)
T ss_pred             eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc--CCCccEEEEecccceEEEEccccc-
Confidence            999999999999988310            01112233456899999999999  999999999999999999999875 


Q ss_pred             CCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCC------CCceeeeecCccC
Q psy17342        203 SPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGH------EGPVVGLSSHRAQ  276 (401)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~------~~~v~~i~~~~~~  276 (401)
                      .....       +.+|...|..+.|. |-+++|++-+.|+.|++|....  ....+.+.++      ...+..+.|+|+ 
T Consensus       162 ~~~~v-------l~~H~s~VKGvs~D-P~Gky~ASqsdDrtikvwrt~d--w~i~k~It~pf~~~~~~T~f~RlSWSPD-  230 (942)
T KOG0973|consen  162 ELLKV-------LRGHQSLVKGVSWD-PIGKYFASQSDDRTLKVWRTSD--WGIEKSITKPFEESPLTTFFLRLSWSPD-  230 (942)
T ss_pred             eeeee-------eecccccccceEEC-CccCeeeeecCCceEEEEEccc--ceeeEeeccchhhCCCcceeeecccCCC-
Confidence            22222       45599999999999 8999999999999999999653  2233333332      345788999999 


Q ss_pred             CCCCCCcEEEEEeC----CCeEEEEEeeCCCceEEEeecCCceEEEEECCC--------C----C----cEEEEEecCCE
Q psy17342        277 GHIDFSHLYLTSSY----DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPI--------N----P----ALFATVEVAGR  336 (401)
Q Consensus       277 ~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~--------~----~----~~l~~~~~d~~  336 (401)
                           |.+|++...    -..+.|.+-.+.+.-..|-+|..++.+++|+|.        |    .    .++|+|+.|+.
T Consensus       231 -----G~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrS  305 (942)
T KOG0973|consen  231 -----GHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRS  305 (942)
T ss_pred             -----cCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCcc
Confidence                 899998754    346888888777888889999999999999983        1    1    17899999999


Q ss_pred             EEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        337 VDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       337 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      |.||.....+++..+.  .-....|..++|+|||..|++++.||+|.+..++..+
T Consensus       306 lSVW~T~~~RPl~vi~--~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  306 LSVWNTALPRPLFVIH--NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             EEEEecCCCCchhhhh--hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence            9999987666544432  2336789999999999999999999999999998753

>KOG0289|consensus

Probab=99.97  E-value=3.2e-29  Score=205.42  Aligned_cols=286  Identities=18%  Similarity=0.218  Sum_probs=233.0

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIV  144 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~  144 (401)
                      ...+.++...|....+++|+          .|..+.++|..+++.+..+. +|...|+.+.|+|+. ..+++++.|-.|+
T Consensus       219 ~pgi~ald~~~s~~~ilTGG----------~d~~av~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~-~~v~~aSad~~i~  286 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGG----------EDKTAVLFDKPSNQILATLK-GHTKKITSVKFHKDL-DTVITASADEIIR  286 (506)
T ss_pred             CCCeeEEeecCCCCcceecC----------CCCceEEEecchhhhhhhcc-CcceEEEEEEeccch-hheeecCCcceEE
Confidence            46788999999877899998          79999999999877776554 568899999999976 7888999999999


Q ss_pred             EEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342        145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS  224 (401)
Q Consensus       145 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (401)
                      ||........      .....|..+|+.+..  ++.|++|++++.||+..+.|++.+......   ..   ......+++
T Consensus       287 vws~~~~s~~------~~~~~h~~~V~~ls~--h~tgeYllsAs~d~~w~Fsd~~~g~~lt~v---s~---~~s~v~~ts  352 (506)
T KOG0289|consen  287 VWSVPLSSEP------TSSRPHEEPVTGLSL--HPTGEYLLSASNDGTWAFSDISSGSQLTVV---SD---ETSDVEYTS  352 (506)
T ss_pred             eeccccccCc------cccccccccceeeee--ccCCcEEEEecCCceEEEEEccCCcEEEEE---ee---ccccceeEE
Confidence            9998766532      445789999999998  999999999999999999999864322211   11   123456899


Q ss_pred             EEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc
Q psy17342        225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP  304 (401)
Q Consensus       225 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  304 (401)
                      .+|+ ||+.+|.+|+.|+.+++||+....  .+..|.+|.++|..++|+.+      |.++++++.|+.|++||+|..+.
T Consensus       353 ~~fH-pDgLifgtgt~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsEN------GY~Lat~add~~V~lwDLRKl~n  423 (506)
T KOG0289|consen  353 AAFH-PDGLIFGTGTPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSEN------GYWLATAADDGSVKLWDLRKLKN  423 (506)
T ss_pred             eeEc-CCceEEeccCCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccC------ceEEEEEecCCeEEEEEehhhcc
Confidence            9999 899999999999999999998655  57889999999999999998      89999999999999999999888


Q ss_pred             eEEEeecC-CceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEE
Q psy17342        305 VHSFNEFR-DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAIT  383 (401)
Q Consensus       305 ~~~~~~~~-~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~  383 (401)
                      ..++...+ ..+.++.|.+.|. +|+.++.|=+|++++-.+... ........|.+..+.+.|....+++++++.|..++
T Consensus       424 ~kt~~l~~~~~v~s~~fD~SGt-~L~~~g~~l~Vy~~~k~~k~W-~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~  501 (506)
T KOG0289|consen  424 FKTIQLDEKKEVNSLSFDQSGT-YLGIAGSDLQVYICKKKTKSW-TEIKELADHSGLSTGVRFGEHAQYLASTSMDAILR  501 (506)
T ss_pred             cceeeccccccceeEEEcCCCC-eEEeecceeEEEEEecccccc-eeeehhhhcccccceeeecccceEEeeccchhheE
Confidence            88876532 3699999999997 677777776666666444322 12222234556788999999999999999999988


Q ss_pred             EEEe
Q psy17342        384 MFDV  387 (401)
Q Consensus       384 iw~~  387 (401)
                      ++.+
T Consensus       502 ~~a~  505 (506)
T KOG0289|consen  502 LYAL  505 (506)
T ss_pred             Eeec
Confidence            8765

>KOG0274|consensus

Probab=99.97  E-value=1e-29  Score=227.32  Aligned_cols=272  Identities=18%  Similarity=0.256  Sum_probs=224.3

Q ss_pred             hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH   86 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   86 (401)
                      ..++++|+.+.++++|+......+..                           .-.+|.+.|.+++|..-+..|++|+  
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~~i~~---------------------------~l~GH~g~V~~l~~~~~~~~lvsgS--  268 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGYLILT---------------------------RLVGHFGGVWGLAFPSGGDKLVSGS--  268 (537)
T ss_pred             cCeEEecCCCceeEEeecccceEEEe---------------------------eccCCCCCceeEEEecCCCEEEEEe--
Confidence            45778888888888888665552211                           1126779999999998777899999  


Q ss_pred             cCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCC
Q psy17342         87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH  166 (401)
Q Consensus        87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  166 (401)
                              .|.++++||+.++.+...+. +|.+.|.++...+   .++++|+.|.+|++|++.++.....      +.+|
T Consensus       269 --------~D~t~rvWd~~sg~C~~~l~-gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l------~~~h  330 (537)
T KOG0274|consen  269 --------TDKTERVWDCSTGECTHSLQ-GHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNL------LRGH  330 (537)
T ss_pred             --------cCCcEEeEecCCCcEEEEec-CCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEE------eccc
Confidence                    79999999999999887665 5788999998843   6788999999999999998776432      3459


Q ss_pred             CCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEE
Q psy17342        167 THPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYS  246 (401)
Q Consensus       167 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~  246 (401)
                      .++|+++..    ++.++++|+.|++|++||+.+ .+....       +.+|...|+++.+. .. +.+++|+.|+.|++
T Consensus       331 ~~~V~~v~~----~~~~lvsgs~d~~v~VW~~~~-~~cl~s-------l~gH~~~V~sl~~~-~~-~~~~Sgs~D~~Ikv  396 (537)
T KOG0274|consen  331 TGPVNCVQL----DEPLLVSGSYDGTVKVWDPRT-GKCLKS-------LSGHTGRVYSLIVD-SE-NRLLSGSLDTTIKV  396 (537)
T ss_pred             cccEEEEEe----cCCEEEEEecCceEEEEEhhh-ceeeee-------ecCCcceEEEEEec-Cc-ceEEeeeeccceEe
Confidence            999999998    488999999999999999984 222222       45699999999877 33 89999999999999


Q ss_pred             EeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee-cCCceEEEEECCCCC
Q psy17342        247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE-FRDYVMDVQWSPINP  325 (401)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~  325 (401)
                      ||++... +++..+.+|..-+.++.+.        .++|++++.|++|++||..++++++++.+ |.+.|..+++.  . 
T Consensus       397 Wdl~~~~-~c~~tl~~h~~~v~~l~~~--------~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~-  464 (537)
T KOG0274|consen  397 WDLRTKR-KCIHTLQGHTSLVSSLLLR--------DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--K-  464 (537)
T ss_pred             ecCCchh-hhhhhhcCCcccccccccc--------cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--c-
Confidence            9998553 5889999999999777765        58999999999999999999999999998 67889988887  2 


Q ss_pred             cEEEEEecCCEEEEEeCCCCCCCcce
Q psy17342        326 ALFATVEVAGRVDLWNLNLDTEVPAT  351 (401)
Q Consensus       326 ~~l~~~~~d~~i~iwd~~~~~~~~~~  351 (401)
                      ..+++++.|+.+++||+++++....+
T Consensus       465 ~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  465 EEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             ceEEEEecCCeeEEEecccCchhhhh
Confidence            26788889999999999998876654

>KOG0269|consensus

Probab=99.97  E-value=3.2e-30  Score=225.49  Aligned_cols=292  Identities=17%  Similarity=0.277  Sum_probs=227.4

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe------cCCCeeEEEEeCCCCceEEEEec
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF------CQSPVLSCCFAKFNPYLILGGTY  139 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~g~~  139 (401)
                      ....+|..+++-..++.++           ...++||..............      ..-.+..++|+....++||+++.
T Consensus        40 ~~~nAIs~nr~~~qiv~AG-----------rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~  108 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAG-----------RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCST  108 (839)
T ss_pred             cccceEeecCCcceeEEec-----------ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecC
Confidence            5678888899998899888           678889888653333222221      11346678898777789999999


Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                      +|.|.+||+......+.   ...+..|...++++.|. +....+|++||.||+|++||++..... .+       ..+..
T Consensus       109 nG~i~vWdlnk~~rnk~---l~~f~EH~Rs~~~ldfh-~tep~iliSGSQDg~vK~~DlR~~~S~-~t-------~~~nS  176 (839)
T KOG0269|consen  109 NGVISVWDLNKSIRNKL---LTVFNEHERSANKLDFH-STEPNILISGSQDGTVKCWDLRSKKSK-ST-------FRSNS  176 (839)
T ss_pred             CCcEEEEecCccccchh---hhHhhhhccceeeeeec-cCCccEEEecCCCceEEEEeeeccccc-cc-------ccccc
Confidence            99999999987322111   13568999999999995 456678999999999999999863222 22       23367


Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      ..|+.+.|+|..+..|+++.+.|.+++||++.. .++...+.+|.++|.++.|+|+      +.+|||||.|+.|+|||.
T Consensus       177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp-~r~~~k~~AH~GpV~c~nwhPn------r~~lATGGRDK~vkiWd~  249 (839)
T KOG0269|consen  177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP-DRCEKKLTAHNGPVLCLNWHPN------REWLATGGRDKMVKIWDM  249 (839)
T ss_pred             hhhhceeeccCCCceEEEecCCceEEEeeccCc-hhHHHHhhcccCceEEEeecCC------CceeeecCCCccEEEEec
Confidence            789999999989999999999999999999853 3467788899999999999997      799999999999999999


Q ss_pred             eCCC--ceEEEeecCCceEEEEECCCCCcEEEEEe--cCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecC-CCcEEE
Q psy17342        300 KENK--PVHSFNEFRDYVMDVQWSPINPALFATVE--VAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTP-NGTQLC  374 (401)
Q Consensus       300 ~~~~--~~~~~~~~~~~v~~v~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~  374 (401)
                      ...+  ++.++.. ..+|.+|.|-|..++.||+++  .|-.|+|||++..- ++. .....|...++.++|.. |-..|.
T Consensus       250 t~~~~~~~~tInT-iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY-IP~-~t~~eH~~~vt~i~W~~~d~~~l~  326 (839)
T KOG0269|consen  250 TDSRAKPKHTINT-IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY-IPY-ATFLEHTDSVTGIAWDSGDRINLW  326 (839)
T ss_pred             cCCCccceeEEee-cceeeeeeeccCccchhhhhhccccceEEEEeecccc-ccc-eeeeccCccccceeccCCCceeeE
Confidence            7654  4445554 568999999999988888876  46789999998643 232 23357788899999975 456788


Q ss_pred             EEecCCcEEEEEeccC
Q psy17342        375 VGDEKGAITMFDVGEV  390 (401)
Q Consensus       375 ~~~~dg~v~iw~~~~~  390 (401)
                      +++.||+|..-.+++.
T Consensus       327 s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  327 SCSKDGTVLQHLFKNA  342 (839)
T ss_pred             eecCccHHHHhhhhcc
Confidence            9999998876655554

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=3e-28  Score=218.68  Aligned_cols=239  Identities=11%  Similarity=0.059  Sum_probs=174.0

Q ss_pred             EecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCccccccccccc
Q psy17342        137 GTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNK  215 (401)
Q Consensus       137 g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  215 (401)
                      |+.++.|++|+.......      ..+.+|.++|.+++|  +|+ +.+|++|+.|++|++||+...........-....+
T Consensus        50 GG~~gvI~L~~~~r~~~v------~~L~gH~~~V~~laf--sP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L  121 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPV------IKLKGHTSSILDLQF--NPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL  121 (568)
T ss_pred             CCceeEEEeeecCCCceE------EEEcCCCCCEEEEEE--cCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe
Confidence            567788999998654321      345799999999999  776 78999999999999999975322111100000013


Q ss_pred             cCCccceEEEEeccCCCC-eEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeE
Q psy17342        216 QTKNLAVLSLAFPQNDVN-NFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSV  294 (401)
Q Consensus       216 ~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i  294 (401)
                      .+|...|.+++|+ |++. .+++++.|+.|++||++...  ....+. |...|.+++|+|+      +.+|++++.|+.|
T Consensus       122 ~gH~~~V~sVaf~-P~g~~iLaSgS~DgtIrIWDl~tg~--~~~~i~-~~~~V~Slswspd------G~lLat~s~D~~I  191 (568)
T PTZ00420        122 KGHKKKISIIDWN-PMNYYIMCSSGFDSFVNIWDIENEK--RAFQIN-MPKKLSSLKWNIK------GNLLSGTCVGKHM  191 (568)
T ss_pred             ecCCCcEEEEEEC-CCCCeEEEEEeCCCeEEEEECCCCc--EEEEEe-cCCcEEEEEECCC------CCEEEEEecCCEE
Confidence            4588999999999 5555 56789999999999998543  344554 6678999999998      7999999999999


Q ss_pred             EEEEeeCCCceEEEeecCCceEE-----EEECCCCCcEEEEEecCC----EEEEEeCCCC-CCCcceEEeecCCCCeEEE
Q psy17342        295 KLWNIKENKPVHSFNEFRDYVMD-----VQWSPINPALFATVEVAG----RVDLWNLNLD-TEVPATSAIVEGAPALSRV  364 (401)
Q Consensus       295 ~iwd~~~~~~~~~~~~~~~~v~~-----v~~~~~~~~~l~~~~~d~----~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~  364 (401)
                      +|||+++++.+.++.+|.+.+..     ..|++++. ++++++.|+    .|+|||++.. ..+..... ..+...+...
T Consensus       192 rIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l-d~~~~~L~p~  269 (568)
T PTZ00420        192 HIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNTTSALVTMSI-DNASAPLIPH  269 (568)
T ss_pred             EEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCCCCceEEEEe-cCCccceEEe
Confidence            99999999999999999876543     33568876 567666563    7999999963 33322211 1122333333


Q ss_pred             EecCCCcEEEEEecCCcEEEEEeccCcccee
Q psy17342        365 TWTPNGTQLCVGDEKGAITMFDVGEVGIACL  395 (401)
Q Consensus       365 ~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l  395 (401)
                      ...++|.++++|+.|+.|++|++..+.+..+
T Consensus       270 ~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l  300 (568)
T PTZ00420        270 YDESTGLIYLIGKGDGNCRYYQHSLGSIRKV  300 (568)
T ss_pred             eeCCCCCEEEEEECCCeEEEEEccCCcEEee
Confidence            3455689999999999999999987654333

>KOG0772|consensus

Probab=99.97  E-value=5.6e-30  Score=214.24  Aligned_cols=288  Identities=14%  Similarity=0.149  Sum_probs=216.0

Q ss_pred             hhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEE
Q psy17342          5 EAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLAS   84 (401)
Q Consensus         5 ~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   84 (401)
                      -.|.+++||++|-+|+.||+.+....  +. .|+-..+                    .....|.+++|++.|..|++.+
T Consensus       177 p~GaR~~sGs~Dy~v~~wDf~gMdas--~~-~fr~l~P--------------------~E~h~i~sl~ys~Tg~~iLvvs  233 (641)
T KOG0772|consen  177 PSGARFVSGSLDYTVKFWDFQGMDAS--MR-SFRQLQP--------------------CETHQINSLQYSVTGDQILVVS  233 (641)
T ss_pred             CCCceeeeccccceEEEEeccccccc--ch-hhhccCc--------------------ccccccceeeecCCCCeEEEEe
Confidence            35778999999999999999876521  10 1220000                    1236799999999999999888


Q ss_pred             eccCCCCCCCCCcEEEEEeCcCCCCCceEE------------EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCC
Q psy17342         85 YHRNKEAPNEPDGVCLIWNTKFKKTTPEFE------------FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQK  152 (401)
Q Consensus        85 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~  152 (401)
                                .....+|+|-+. ..+.++.            -+|...++|.+|+|+.+..+++++.||+++||+++...
T Consensus       234 ----------g~aqakl~DRdG-~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k  302 (641)
T KOG0772|consen  234 ----------GSAQAKLLDRDG-FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK  302 (641)
T ss_pred             ----------cCcceeEEccCC-ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch
Confidence                      688999999873 3222221            24678899999999998999999999999999998765


Q ss_pred             CCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc--ceEEEEeccC
Q psy17342        153 KTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL--AVLSLAFPQN  230 (401)
Q Consensus       153 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~  230 (401)
                      .....-.+....+..-+++.++|  ++++..|++|+.||.|.+|+..... ....+.+    ...|..  .|+|+.|+ .
T Consensus       303 ~q~qVik~k~~~g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~-v~p~~~v----k~AH~~g~~Itsi~FS-~  374 (641)
T KOG0772|consen  303 SQLQVIKTKPAGGKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRT-VRPVMKV----KDAHLPGQDITSISFS-Y  374 (641)
T ss_pred             hheeEEeeccCCCcccCceeeec--CCCcchhhhcccCCceeeeecCCcc-cccceEe----eeccCCCCceeEEEec-c
Confidence            43221111222455668899999  9999999999999999999985422 1112222    234555  89999999 8


Q ss_pred             CCCeEEEEcCCceEEEEeCCCCCCCceeeecC--CCCceeeeecCccCCCCCCCcEEEEEeC------CCeEEEEEeeCC
Q psy17342        231 DVNNFVVGCEDGNVYSACRHGNKAGNVECYEG--HEGPVVGLSSHRAQGHIDFSHLYLTSSY------DWSVKLWNIKEN  302 (401)
Q Consensus       231 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~  302 (401)
                      ++++|++-+.|+.+++||++..+. ++....+  ...+-+.++|+|+      .++|++|..      .+.+.+||..+-
T Consensus       375 dg~~LlSRg~D~tLKvWDLrq~kk-pL~~~tgL~t~~~~tdc~FSPd------~kli~TGtS~~~~~~~g~L~f~d~~t~  447 (641)
T KOG0772|consen  375 DGNYLLSRGFDDTLKVWDLRQFKK-PLNVRTGLPTPFPGTDCCFSPD------DKLILTGTSAPNGMTAGTLFFFDRMTL  447 (641)
T ss_pred             ccchhhhccCCCceeeeecccccc-chhhhcCCCccCCCCccccCCC------ceEEEecccccCCCCCceEEEEeccce
Confidence            999999999999999999986543 4444433  2345678999999      689998864      568999999998


Q ss_pred             CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeC
Q psy17342        303 KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNL  342 (401)
Q Consensus       303 ~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~  342 (401)
                      ..+.++......|..+.|+|.-+. +..|+.||.+++|--
T Consensus       448 d~v~ki~i~~aSvv~~~WhpkLNQ-i~~gsgdG~~~vyYd  486 (641)
T KOG0772|consen  448 DTVYKIDISTASVVRCLWHPKLNQ-IFAGSGDGTAHVYYD  486 (641)
T ss_pred             eeEEEecCCCceEEEEeecchhhh-eeeecCCCceEEEEC
Confidence            889888877888999999998764 555667899998743

>KOG0310|consensus

Probab=99.97  E-value=3.8e-29  Score=207.98  Aligned_cols=261  Identities=18%  Similarity=0.229  Sum_probs=209.4

Q ss_pred             cEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEe
Q psy17342         97 GVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVI  176 (401)
Q Consensus        97 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  176 (401)
                      -..+-|+-.+....    ......|.+++|+|..+.-+++.+ .-.+.||+..+....      -.+......|.++.| 
T Consensus         9 ~e~~~w~~~~~~~~----~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~------k~~srFk~~v~s~~f-   76 (487)
T KOG0310|consen    9 PEIRYWRQETFPPV----HKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVR------KTFSRFKDVVYSVDF-   76 (487)
T ss_pred             ccchhhhhhccccc----ccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhh------hhHHhhccceeEEEe-
Confidence            34455554433222    223678999999998888777764 467999998876543      124567788999999 


Q ss_pred             ecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCc
Q psy17342        177 GTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGN  256 (401)
Q Consensus       177 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~  256 (401)
                       ..||.++++|...|.|+++|+..    ..  .+..  +.+|..++..+.|+|.++..+++|++|+.+++||+.+..  .
T Consensus        77 -R~DG~LlaaGD~sG~V~vfD~k~----r~--iLR~--~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--v  145 (487)
T KOG0310|consen   77 -RSDGRLLAAGDESGHVKVFDMKS----RV--ILRQ--LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--V  145 (487)
T ss_pred             -ecCCeEEEccCCcCcEEEecccc----HH--HHHH--HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--E
Confidence             89999999999999999999653    11  1111  456999999999998888899999999999999998544  3


Q ss_pred             eeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC-CceEEEeecCCceEEEEECCCCCcEEEEEecCC
Q psy17342        257 VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN-KPVHSFNEFRDYVMDVQWSPINPALFATVEVAG  335 (401)
Q Consensus       257 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~  335 (401)
                      ...+.+|++.|.|.+++|..     +..++|||.||.|++||++.. ..+.++. |..+|..+.+-|.|. ++++++ .+
T Consensus       146 ~~~l~~htDYVR~g~~~~~~-----~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs-~iasAg-Gn  217 (487)
T KOG0310|consen  146 QAELSGHTDYVRCGDISPAN-----DHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGS-LIASAG-GN  217 (487)
T ss_pred             EEEecCCcceeEeeccccCC-----CeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCC-EEEEcC-CC
Confidence            55788999999999999986     679999999999999999987 5555554 789999999999997 788876 56


Q ss_pred             EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        336 RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       336 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      .+++||+.++.+.....  ..|...|+|+++..++..|++|+-|+.|++||+.+-
T Consensus       218 ~vkVWDl~~G~qll~~~--~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~  270 (487)
T KOG0310|consen  218 SVKVWDLTTGGQLLTSM--FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY  270 (487)
T ss_pred             eEEEEEecCCceehhhh--hcccceEEEEEeecCCceEeecccccceEEEEccce
Confidence            89999999776543332  348889999999999999999999999999997654

>KOG2096|consensus

Probab=99.97  E-value=1.6e-28  Score=193.91  Aligned_cols=290  Identities=14%  Similarity=0.177  Sum_probs=212.9

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCce----EEEecCCCeeEEEEeCCCCceEEEEe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE----FEFFCQSPVLSCCFAKFNPYLILGGT  138 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~g~  138 (401)
                      +|.+.|++++|+.||++|++++          .|++|+||+++.-.....    ... .-+..+.+.|+||-..++++.-
T Consensus        84 gH~~~vt~~~FsSdGK~lat~~----------~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~  152 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGKKLATIS----------GDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVK  152 (420)
T ss_pred             ccCCceeeeEEcCCCceeEEEe----------CCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEc
Confidence            5899999999999999999999          899999999975221111    111 1346789999999878888877


Q ss_pred             cCCeEEEEECCCCCCCce--eeccc---c-ccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccc
Q psy17342        139 YSGQIVLWDTRVQKKTPV--HRTPL---S-VMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY  212 (401)
Q Consensus       139 ~dg~v~iw~~~~~~~~~~--~~~~~---~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~  212 (401)
                      ...++++|.+...+....  ...+.   . -..|.-.|..+-.  ..++.+|++++.|..|.+|+++  ++....+..  
T Consensus       153 ~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk--Gq~L~~idt--  226 (420)
T KOG2096|consen  153 RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK--GQLLQSIDT--  226 (420)
T ss_pred             cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC--Cceeeeecc--
Confidence            778899998764332110  00000   0 1345666777766  6788999999999999999997  333332221  


Q ss_pred             ccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCC------CCCceeeecCCCCceeeeecCccCCCCCCCcEEE
Q psy17342        213 NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGN------KAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL  286 (401)
Q Consensus       213 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~------~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~  286 (401)
                           ....-+..+.+ |+++++++++..-.|.+|..--.      ....+..++||...|..++|+|+      +..++
T Consensus       227 -----nq~~n~~aavS-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~------S~r~v  294 (420)
T KOG2096|consen  227 -----NQSSNYDAAVS-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS------STRAV  294 (420)
T ss_pred             -----ccccccceeeC-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC------cceeE
Confidence                 23344566788 89999999999999999975321      22345678899999999999999      79999


Q ss_pred             EEeCCCeEEEEEeeC-------CCceEEEe----ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee
Q psy17342        287 TSSYDWSVKLWNIKE-------NKPVHSFN----EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV  355 (401)
Q Consensus       287 s~~~d~~i~iwd~~~-------~~~~~~~~----~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  355 (401)
                      +.+.||+++|||..-       .+.+++..    ...+....+.++|+|+ .||.+ ....|++|..++++..+.+.  .
T Consensus       295 tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~-~lA~s-~gs~l~~~~se~g~~~~~~e--~  370 (420)
T KOG2096|consen  295 TVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD-SLAVS-FGSDLKVFASEDGKDYPELE--D  370 (420)
T ss_pred             EEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc-EEEee-cCCceEEEEcccCccchhHH--H
Confidence            999999999999742       12233321    1223344899999998 55544 45689999999988877765  3


Q ss_pred             cCCCCeEEEEecCCCcEEEEEecCCcEEEEE
Q psy17342        356 EGAPALSRVTWTPNGTQLCVGDEKGAITMFD  386 (401)
Q Consensus       356 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~  386 (401)
                      .|...|.+++|+++|+++++++ |..++++.
T Consensus       371 ~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  371 IHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             hhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            6788899999999999999988 45677765

>KOG0973|consensus

Probab=99.97  E-value=1.7e-29  Score=229.29  Aligned_cols=298  Identities=16%  Similarity=0.203  Sum_probs=218.6

Q ss_pred             hhccccccc--cccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEE
Q psy17342          6 AGESQISGT--LHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLA   83 (401)
Q Consensus         6 ~~~~~~~g~--~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   83 (401)
                      .+..+|||+  .||.++||+...-.  .+.   ..+        ...  +.+... ....|.+.|.|+.|+|||++||+|
T Consensus        24 dg~~~aTgGq~~d~~~~iW~~~~vl--~~~---~~~--------~~~--l~k~l~-~m~~h~~sv~CVR~S~dG~~lAsG   87 (942)
T KOG0973|consen   24 DGVKFATGGQVLDGGIVIWSQDPVL--DEK---EEK--------NEN--LPKHLC-TMDDHDGSVNCVRFSPDGSYLASG   87 (942)
T ss_pred             CceeEecCCccccccceeecccccc--chh---hhh--------hcc--cchhhe-eeccccCceeEEEECCCCCeEeec
Confidence            467889999  89999999754221  000   000        000  111111 122577999999999999999999


Q ss_pred             EeccCCCCCCCCCcEEEEEeCcC------CCC-----------CceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEE
Q psy17342         84 SYHRNKEAPNEPDGVCLIWNTKF------KKT-----------TPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLW  146 (401)
Q Consensus        84 ~~~~~~~~~~~~d~~v~iwd~~~------~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw  146 (401)
                      +          .|+.|.||+...      ...           ......+|...|..++|+|++ .+|++++.|++|.||
T Consensus        88 S----------DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiw  156 (942)
T KOG0973|consen   88 S----------DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIW  156 (942)
T ss_pred             c----------CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEE
Confidence            9          899999999873      000           111234589999999999976 899999999999999


Q ss_pred             ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEE
Q psy17342        147 DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLA  226 (401)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  226 (401)
                      +..+....      ..+.+|.+.|-.+.|  .|-|++|++-+.|++|++|++...+.. ..+.-+.. ..+-....+.+.
T Consensus       157 n~~tF~~~------~vl~~H~s~VKGvs~--DP~Gky~ASqsdDrtikvwrt~dw~i~-k~It~pf~-~~~~~T~f~RlS  226 (942)
T KOG0973|consen  157 NAKTFELL------KVLRGHQSLVKGVSW--DPIGKYFASQSDDRTLKVWRTSDWGIE-KSITKPFE-ESPLTTFFLRLS  226 (942)
T ss_pred             ccccceee------eeeecccccccceEE--CCccCeeeeecCCceEEEEEcccceee-Eeeccchh-hCCCcceeeecc
Confidence            99987543      335799999999999  999999999999999999997652211 11111110 122345678999


Q ss_pred             eccCCCCeEEEEcC----CceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCC-------C----cEEEEEeCC
Q psy17342        227 FPQNDVNNFVVGCE----DGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDF-------S----HLYLTSSYD  291 (401)
Q Consensus       227 ~~~~~~~~l~~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~-------~----~~l~s~~~d  291 (401)
                      |+ |+|.+|++...    -..+.+.+..+  .+.-..+-||.+++.++.|+|.-.....       .    ..+|+|+.|
T Consensus       227 WS-PDG~~las~nA~n~~~~~~~IieR~t--Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD  303 (942)
T KOG0973|consen  227 WS-PDGHHLASPNAVNGGKSTIAIIERGT--WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD  303 (942)
T ss_pred             cC-CCcCeecchhhccCCcceeEEEecCC--ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence            99 89999998632    33467777653  3345678899999999999995322111       1    278899999


Q ss_pred             CeEEEEEeeCCCceEEEee-cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        292 WSVKLWNIKENKPVHSFNE-FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       292 ~~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      ++|.||.....+|+..... ....|.+++|+|+|- .|.++|.||+|.+..+..
T Consensus       304 rSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~-~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  304 RSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGF-SLFACSLDGTVALIHFEE  356 (942)
T ss_pred             ccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCC-eEEEEecCCeEEEEEcch
Confidence            9999999988888766443 467899999999997 677889999999999865

>KOG0647|consensus

Probab=99.97  E-value=7.6e-29  Score=194.18  Aligned_cols=266  Identities=13%  Similarity=0.217  Sum_probs=205.2

Q ss_pred             hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH   86 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   86 (401)
                      ...++.|+.||+||+|++.....+..                          .-...|.++|.+++|+.+|..+++++  
T Consensus        40 ~~~~~A~SWD~tVR~wevq~~g~~~~--------------------------ka~~~~~~PvL~v~WsddgskVf~g~--   91 (347)
T KOG0647|consen   40 DNLLAAGSWDGTVRIWEVQNSGQLVP--------------------------KAQQSHDGPVLDVCWSDDGSKVFSGG--   91 (347)
T ss_pred             CceEEecccCCceEEEEEecCCcccc--------------------------hhhhccCCCeEEEEEccCCceEEeec--
Confidence            45677999999999999877531100                          01125679999999999999999999  


Q ss_pred             cCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCC-ceEEEEecCCeEEEEECCCCCCCceeeccccccC
Q psy17342         87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNP-YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMA  165 (401)
Q Consensus        87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~  165 (401)
                              .|+.+++||+.+++..  ....|.++|.++.|-+... ..|++|+.|.+|+.||.+.......       ..
T Consensus        92 --------~Dk~~k~wDL~S~Q~~--~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t-------~~  154 (347)
T KOG0647|consen   92 --------CDKQAKLWDLASGQVS--QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVAT-------LQ  154 (347)
T ss_pred             --------cCCceEEEEccCCCee--eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeee-------ee
Confidence                    7999999999987433  3445799999999987331 3899999999999999997664322       34


Q ss_pred             CCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEE
Q psy17342        166 HTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVY  245 (401)
Q Consensus       166 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  245 (401)
                      -.+.++++..    ...+++.+..+..|.+|+++.........+      ..-+-.++|++.. .+....+.|+-+|.+.
T Consensus       155 LPeRvYa~Dv----~~pm~vVata~r~i~vynL~n~~te~k~~~------SpLk~Q~R~va~f-~d~~~~alGsiEGrv~  223 (347)
T KOG0647|consen  155 LPERVYAADV----LYPMAVVATAERHIAVYNLENPPTEFKRIE------SPLKWQTRCVACF-QDKDGFALGSIEGRVA  223 (347)
T ss_pred             ccceeeehhc----cCceeEEEecCCcEEEEEcCCCcchhhhhc------CcccceeeEEEEE-ecCCceEeeeecceEE
Confidence            4567777765    556888899999999999975332222211      1134568899888 7888889999999999


Q ss_pred             EEeCCCCCCCceeeecCCCC---------ceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceE
Q psy17342        246 SACRHGNKAGNVECYEGHEG---------PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVM  316 (401)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~---------~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  316 (401)
                      +..+.......-.+|+.|..         +|++|+|+|.      ...|+|++.||+..+||-.....+++.+.|..+|+
T Consensus       224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~------hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpIt  297 (347)
T KOG0647|consen  224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPV------HGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPIT  297 (347)
T ss_pred             EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecc------cceEEEecCCceEEEecchhhhhhhccCcCCCccc
Confidence            98887643345667777763         5788999998      58999999999999999988888888899999999


Q ss_pred             EEEECCCCCcEEEEEecC
Q psy17342        317 DVQWSPINPALFATVEVA  334 (401)
Q Consensus       317 ~v~~~~~~~~~l~~~~~d  334 (401)
                      +.+|+.+|..+.++.++|
T Consensus       298 cc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  298 CCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             eeEecCCCCEEEEEeecc
Confidence            999999998444445544

>KOG1407|consensus

Probab=99.97  E-value=6.6e-29  Score=190.67  Aligned_cols=247  Identities=15%  Similarity=0.174  Sum_probs=201.2

Q ss_pred             ecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEE
Q psy17342        116 FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCS  195 (401)
Q Consensus       116 ~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~  195 (401)
                      .|...+.+++|+-+| ..|++|+.|+++.+|+++..+...    .....+|.+.|-.++|. .+..+.|++++.|.+|++
T Consensus        18 ~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~~~----~~~~~gh~~svdql~w~-~~~~d~~atas~dk~ir~   91 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRFRK----ELVYRGHTDSVDQLCWD-PKHPDLFATASGDKTIRI   91 (313)
T ss_pred             hhhhcceEEEEcccC-ceeeecccCCceEEEEecchhhhh----hhcccCCCcchhhheeC-CCCCcceEEecCCceEEE
Confidence            467899999999988 799999999999999998774321    24457999999999995 456779999999999999


Q ss_pred             eeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCcc
Q psy17342        196 WSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRA  275 (401)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  275 (401)
                      ||++.. ++......        ...-.-+.|+ |++++++++..|..|...|.+..+  .+...+ ....+.-+.|+-+
T Consensus        92 wd~r~~-k~~~~i~~--------~~eni~i~ws-p~g~~~~~~~kdD~it~id~r~~~--~~~~~~-~~~e~ne~~w~~~  158 (313)
T KOG1407|consen   92 WDIRSG-KCTARIET--------KGENINITWS-PDGEYIAVGNKDDRITFIDARTYK--IVNEEQ-FKFEVNEISWNNS  158 (313)
T ss_pred             EEeccC-cEEEEeec--------cCcceEEEEc-CCCCEEEEecCcccEEEEEecccc--eeehhc-ccceeeeeeecCC
Confidence            999873 33333222        2234457888 899999999999999999988543  333333 4456778888855


Q ss_pred             CCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee
Q psy17342        276 QGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV  355 (401)
Q Consensus       276 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  355 (401)
                            +++|+....-|.|.|.....-+++.+++.|+....||.|+|+|+ +||+|+.|..+.+||+..--++..+.   
T Consensus       159 ------nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~ELiC~R~is---  228 (313)
T KOG1407|consen  159 ------NDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDELICERCIS---  228 (313)
T ss_pred             ------CCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCc-eEeeccccceeeccChhHhhhheeec---
Confidence                  56666666689999999999999999999999999999999998 89999999999999998765555543   


Q ss_pred             cCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        356 EGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       356 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      .+.-+|..++||.||++||+|++|..|-|=++++|.
T Consensus       229 RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd  264 (313)
T KOG1407|consen  229 RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD  264 (313)
T ss_pred             cccCceEEEEeccCcceeeccCccceEEeEecccCC
Confidence            456789999999999999999999999999999884

>KOG0308|consensus

Probab=99.97  E-value=1e-29  Score=218.34  Aligned_cols=291  Identities=13%  Similarity=0.187  Sum_probs=228.7

Q ss_pred             EEEec-CCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCce-----EEEecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342         70 YMDWS-TQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE-----FEFFCQSPVLSCCFAKFNPYLILGGTYSGQI  143 (401)
Q Consensus        70 ~~~~~-~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v  143 (401)
                      .+..+ |.+++|++|+          +||.|++|+.......+.     ..-+|...|+.+....++ +.|++++.|-+|
T Consensus        29 ~Lq~da~~~ryLfTgG----------RDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTV   97 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGG----------RDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG-KTLISASSDTTV   97 (735)
T ss_pred             hccccCCCCceEEecC----------CCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC-CceEEecCCceE
Confidence            34444 4566799999          899999999875333211     112468889999988866 688899999999


Q ss_pred             EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCC-Ccccc-cccccccc-CCcc
Q psy17342        144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSS-PQETR-DLQYNNKQ-TKNL  220 (401)
Q Consensus       144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~-~~~~~~~~-~~~~  220 (401)
                      ++|+....... ..   -.+..|.+.|.|+++. .++...+++|+.|+.|.+||++.+.. ..... .+....+. ++..
T Consensus        98 K~W~~~~~~~~-c~---stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~  172 (735)
T KOG0308|consen   98 KVWNAHKDNTF-CM---STIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD  172 (735)
T ss_pred             EEeecccCcch-hH---hhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence            99999876411 11   2357899999999984 56788999999999999999986422 10000 11111122 6888


Q ss_pred             ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEee
Q psy17342        221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIK  300 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  300 (401)
                      .|++++.+ +.+..+++|+..+.+++||.+..+  .+..++||...|..+..+++      |..++++|.||+|++||+.
T Consensus       173 siYSLA~N-~t~t~ivsGgtek~lr~wDprt~~--kimkLrGHTdNVr~ll~~dD------Gt~~ls~sSDgtIrlWdLg  243 (735)
T KOG0308|consen  173 SIYSLAMN-QTGTIIVSGGTEKDLRLWDPRTCK--KIMKLRGHTDNVRVLLVNDD------GTRLLSASSDGTIRLWDLG  243 (735)
T ss_pred             ceeeeecC-CcceEEEecCcccceEEecccccc--ceeeeeccccceEEEEEcCC------CCeEeecCCCceEEeeecc
Confidence            99999999 788899999999999999998543  57788899999999999999      8999999999999999999


Q ss_pred             CCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCC
Q psy17342        301 ENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG  380 (401)
Q Consensus       301 ~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  380 (401)
                      ..+++.++..|...|+++..+|+-. .+++|+.||.|..=|+++......+   ....++|..+..+...+-+-+++.|+
T Consensus       244 qQrCl~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n~~~~tli---ck~daPv~~l~~~~~~~~~WvtTtds  319 (735)
T KOG0308|consen  244 QQRCLATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRNPAKSTLI---CKEDAPVLKLHLHEHDNSVWVTTTDS  319 (735)
T ss_pred             ccceeeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccCCchhheEe---ecCCCchhhhhhccccCCceeeeccc
Confidence            9999999999999999999999986 7999999999999999986433222   34466777777776555567788899


Q ss_pred             cEEEEEecc
Q psy17342        381 AITMFDVGE  389 (401)
Q Consensus       381 ~v~iw~~~~  389 (401)
                      .|+-|..+-
T Consensus       320 ~I~rW~~~~  328 (735)
T KOG0308|consen  320 SIKRWKLEP  328 (735)
T ss_pred             cceecCCcc
Confidence            999998754

>KOG0308|consensus

Probab=99.97  E-value=2.5e-29  Score=215.87  Aligned_cols=332  Identities=16%  Similarity=0.222  Sum_probs=249.1

Q ss_pred             hhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEe
Q psy17342          6 AGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASY   85 (401)
Q Consensus         6 ~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   85 (401)
                      .+.++.||+.||.+++|+...+..-+.-+                      .......|.+.|+.+..+.+++.|++++ 
T Consensus        36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~----------------------~~asme~HsDWVNDiiL~~~~~tlIS~S-   92 (735)
T KOG0308|consen   36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTP----------------------YIASMEHHSDWVNDIILCGNGKTLISAS-   92 (735)
T ss_pred             CCceEEecCCCceEEEeccccccCCcccc----------------------hhhhhhhhHhHHhhHHhhcCCCceEEec-
Confidence            34579999999999999987666322221                      0011124789999999999999999999 


Q ss_pred             ccCCCCCCCCCcEEEEEeCcCCC-CCceEEEecCCCeeEEEE-eCCCCceEEEEecCCeEEEEECCCCCC--Cceee--c
Q psy17342         86 HRNKEAPNEPDGVCLIWNTKFKK-TTPEFEFFCQSPVLSCCF-AKFNPYLILGGTYSGQIVLWDTRVQKK--TPVHR--T  159 (401)
Q Consensus        86 ~~~~~~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~-~~~~~~~l~~g~~dg~v~iw~~~~~~~--~~~~~--~  159 (401)
                               .|-+|++|+...+. .-......|..-|.|+++ .+ ...++|+|+-|+.|.+||++.+..  .....  .
T Consensus        93 ---------sDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t  162 (735)
T KOG0308|consen   93 ---------SDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVT  162 (735)
T ss_pred             ---------CCceEEEeecccCcchhHhhhhcccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccc
Confidence                     89999999998653 112233457899999999 55 447999999999999999997632  11100  0


Q ss_pred             cccc-cCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEE
Q psy17342        160 PLSV-MAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVG  238 (401)
Q Consensus       160 ~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  238 (401)
                      ..++ .++..+|++++-  ++.+..|++|+..+.+++||.++   ..+.+++.     +|...|.++..+ .++..++++
T Consensus       163 ~~sl~sG~k~siYSLA~--N~t~t~ivsGgtek~lr~wDprt---~~kimkLr-----GHTdNVr~ll~~-dDGt~~ls~  231 (735)
T KOG0308|consen  163 VNSLGSGPKDSIYSLAM--NQTGTIIVSGGTEKDLRLWDPRT---CKKIMKLR-----GHTDNVRVLLVN-DDGTRLLSA  231 (735)
T ss_pred             cccCCCCCccceeeeec--CCcceEEEecCcccceEEecccc---ccceeeee-----ccccceEEEEEc-CCCCeEeec
Confidence            0112 388999999998  88999999999999999999986   44455544     599999999999 899999999


Q ss_pred             cCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEE
Q psy17342        239 CEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDV  318 (401)
Q Consensus       239 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v  318 (401)
                      +.||.|++||+.  ..+++.++..|...|.++..+|+      -..+.+|+.||.|..=|+++......+-....+|..+
T Consensus       232 sSDgtIrlWdLg--qQrCl~T~~vH~e~VWaL~~~~s------f~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l  303 (735)
T KOG0308|consen  232 SSDGTIRLWDLG--QQRCLATYIVHKEGVWALQSSPS------FTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKL  303 (735)
T ss_pred             CCCceEEeeecc--ccceeeeEEeccCceEEEeeCCC------cceEEecCCCCcEEecccCCchhheEeecCCCchhhh
Confidence            999999999998  45588999999999999999988      5899999999999999998843333333346677777


Q ss_pred             EECCCCCcEEEEEecCCEEEEEeCCCCCCC---------------cce------EEeecCCCCeEEEEecCCCcEEEEEe
Q psy17342        319 QWSPINPALFATVEVAGRVDLWNLNLDTEV---------------PAT------SAIVEGAPALSRVTWTPNGTQLCVGD  377 (401)
Q Consensus       319 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---------------~~~------~~~~~~~~~v~~~~~s~~g~~l~~~~  377 (401)
                      ..+..... +-+++.|+.|+-|-..-...+               +.+      .....+..+|...+.-.|.+++++-.
T Consensus       304 ~~~~~~~~-~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkD  382 (735)
T KOG0308|consen  304 HLHEHDNS-VWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKD  382 (735)
T ss_pred             hhccccCC-ceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeec
Confidence            77754432 356667888888865421110               000      01122334455556666788999999


Q ss_pred             cCCcEEEEEeccC
Q psy17342        378 EKGAITMFDVGEV  390 (401)
Q Consensus       378 ~dg~v~iw~~~~~  390 (401)
                      ..|.+.+||+-..
T Consensus       383 a~gnv~lwDIl~~  395 (735)
T KOG0308|consen  383 AKGNVALWDILAC  395 (735)
T ss_pred             CCCCEEEEEeeee
Confidence            9999999999765

>KOG2106|consensus

Probab=99.97  E-value=2.3e-27  Score=198.22  Aligned_cols=304  Identities=14%  Similarity=0.187  Sum_probs=228.8

Q ss_pred             CCCCCCceeeeeeeccccc----cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE---Eec
Q psy17342         45 EKSSTKLSFCRQFFDEKWS----KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE---FFC  117 (401)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~---~~~  117 (401)
                      ......+++|.-....+..    .++.|....|+|.++.|+...          ..+.+.+|+++.+....+.-   ...
T Consensus       176 ~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~----------Gk~H~~Fw~~~~~~l~k~~~~fek~e  245 (626)
T KOG2106|consen  176 DSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITC----------GKGHLYFWTLRGGSLVKRQGIFEKRE  245 (626)
T ss_pred             CCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEe----------CCceEEEEEccCCceEEEeecccccc
Confidence            3444556666554443333    567899999999998877776          68999999998765443322   223


Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS  197 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd  197 (401)
                      ...|.|++|.+++  -+++|..+|.|.||+....+..      .....|.+.|.+++.  ..+| .|++|+.|..|..||
T Consensus       246 kk~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~~~------k~~~aH~ggv~~L~~--lr~G-tllSGgKDRki~~Wd  314 (626)
T KOG2106|consen  246 KKFVLCVTFLENG--DVITGDSGGNILIWSKGTNRIS------KQVHAHDGGVFSLCM--LRDG-TLLSGGKDRKIILWD  314 (626)
T ss_pred             ceEEEEEEEcCCC--CEEeecCCceEEEEeCCCceEE------eEeeecCCceEEEEE--ecCc-cEeecCccceEEecc
Confidence            4689999999977  4779999999999999765432      112489999999998  5566 466699999999999


Q ss_pred             ccCCCCCccccccccc----------------------------------cccCCccceEEEEeccCCCCeEEEEcCCce
Q psy17342        198 LEMLSSPQETRDLQYN----------------------------------NKQTKNLAVLSLAFPQNDVNNFVVGCEDGN  243 (401)
Q Consensus       198 ~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  243 (401)
                      -.  -+.....+++..                                  ..++|......++.+ |+.+++++++.|+.
T Consensus       315 ~~--y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~h-ps~~q~~T~gqdk~  391 (626)
T KOG2106|consen  315 DN--YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATH-PSKNQLLTCGQDKH  391 (626)
T ss_pred             cc--ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcC-CChhheeeccCcce
Confidence            32  111112222110                                  134677788889999 78899999999999


Q ss_pred             EEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCC
Q psy17342        244 VYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPI  323 (401)
Q Consensus       244 i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~  323 (401)
                      +++|+-  .+  ++-+.. -..++.|+.|+|.      + .++.|...|...+.|.++...+..-.. +.+++.++|+|+
T Consensus       392 v~lW~~--~k--~~wt~~-~~d~~~~~~fhps------g-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~  458 (626)
T KOG2106|consen  392 VRLWND--HK--LEWTKI-IEDPAECADFHPS------G-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPD  458 (626)
T ss_pred             EEEccC--Cc--eeEEEE-ecCceeEeeccCc------c-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCC
Confidence            999982  22  222222 4578899999998      6 999999999999999998655555444 889999999999


Q ss_pred             CCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342        324 NPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV  387 (401)
Q Consensus       324 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~  387 (401)
                      |. +||.|+.|+.|+||.+.............. .++|+.+.||+|+++|.+-+.|-.|..|..
T Consensus       459 G~-~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~-gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  459 GA-FLAVGSHDNHIYIYRVSANGRKYSRVGKCS-GSPITHLDWSSDSQFLVSNSGDYEILYWKP  520 (626)
T ss_pred             CC-EEEEecCCCeEEEEEECCCCcEEEEeeeec-CceeEEeeecCCCceEEeccCceEEEEEcc
Confidence            97 899999999999999987665433333233 389999999999999999999999999943

>KOG0641|consensus

Probab=99.97  E-value=1.2e-27  Score=180.23  Aligned_cols=256  Identities=14%  Similarity=0.198  Sum_probs=197.4

Q ss_pred             EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC------CCCCceee---ccccccCCCCcEEEEEEeecCCceEEE
Q psy17342        115 FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV------QKKTPVHR---TPLSVMAHTHPVFCMSVIGTQNAHNLI  185 (401)
Q Consensus       115 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~------~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~  185 (401)
                      +.....|.+++|+|.| .+.+.|+...+++|-....      ....+.+.   .....+.|.+.|.|.+|  +|.|.+++
T Consensus        29 l~dsqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~w--s~~gelia  105 (350)
T KOG0641|consen   29 LEDSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAW--SPCGELIA  105 (350)
T ss_pred             ecchhheeeEEecCCC-ceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEe--cCccCeEE
Confidence            4456789999999977 6888999999988864432      11111111   11234679999999999  99999999


Q ss_pred             EEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEec--cCC-CCeEEEEc-CCceEEEEeCCCCCCCceeeec
Q psy17342        186 SISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFP--QND-VNNFVVGC-EDGNVYSACRHGNKAGNVECYE  261 (401)
Q Consensus       186 s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~-~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~  261 (401)
                      +|+.|.+|++..++.......-..+.   +..|...|..++|.  |.. +.+|++++ .|..|++-|..  ..+....+.
T Consensus       106 tgsndk~ik~l~fn~dt~~~~g~dle---~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~--~g~~~~a~s  180 (350)
T KOG0641|consen  106 TGSNDKTIKVLPFNADTCNATGHDLE---FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG--RGQGFHALS  180 (350)
T ss_pred             ecCCCceEEEEecccccccccCccee---eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC--CCCcceeec
Confidence            99999999998776422222222222   34488999999997  222 33455543 35556666654  555788999


Q ss_pred             CCCCceeee-ecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee--c-----CCceEEEEECCCCCcEEEEEec
Q psy17342        262 GHEGPVVGL-SSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE--F-----RDYVMDVQWSPINPALFATVEV  333 (401)
Q Consensus       262 ~~~~~v~~i-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~-----~~~v~~v~~~~~~~~~l~~~~~  333 (401)
                      +|.+.|.++ .|+        +-.|++|+.|.+|++||++-..++.++..  |     ...|.+++..|.|+ +|++|-.
T Consensus       181 ghtghilalyswn--------~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~  251 (350)
T KOG0641|consen  181 GHTGHILALYSWN--------GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHA  251 (350)
T ss_pred             CCcccEEEEEEec--------CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeeccC
Confidence            999999887 454        68999999999999999998888877653  2     35799999999997 9999999


Q ss_pred             CCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        334 AGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       334 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      |....+||++.++.++.+   .+|...|.++.|+|...+|.+++.|..|++=|++..
T Consensus       252 dssc~lydirg~r~iq~f---~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  252 DSSCMLYDIRGGRMIQRF---HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             CCceEEEEeeCCceeeee---CCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence            999999999999877665   588899999999999999999999999999999764

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.2e-27  Score=214.70  Aligned_cols=254  Identities=11%  Similarity=0.111  Sum_probs=183.9

Q ss_pred             CCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCC-c-eeeccccccCCCCcE
Q psy17342         93 NEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKT-P-VHRTPLSVMAHTHPV  170 (401)
Q Consensus        93 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~-~-~~~~~~~~~~~~~~v  170 (401)
                      ++.++.|++|+......+. ...+|.+.|.+++|+|+...+|++|+.||.|+|||+.+.... . .......+.+|...|
T Consensus        50 GG~~gvI~L~~~~r~~~v~-~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVI-KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCceeEEEeeecCCCceEE-EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            3468899999987543322 223578999999999976689999999999999999764321 0 001112357899999


Q ss_pred             EEEEEeecCCceE-EEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeC
Q psy17342        171 FCMSVIGTQNAHN-LISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACR  249 (401)
Q Consensus       171 ~~~~~~~~~~~~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~  249 (401)
                      .+++|  +|++.. +++++.|++|++||++....   ...+.      +...|.+++|+ +++.+|++++.|+.|++||+
T Consensus       129 ~sVaf--~P~g~~iLaSgS~DgtIrIWDl~tg~~---~~~i~------~~~~V~Slsws-pdG~lLat~s~D~~IrIwD~  196 (568)
T PTZ00420        129 SIIDW--NPMNYYIMCSSGFDSFVNIWDIENEKR---AFQIN------MPKKLSSLKWN-IKGNLLSGTCVGKHMHIIDP  196 (568)
T ss_pred             EEEEE--CCCCCeEEEEEeCCCeEEEEECCCCcE---EEEEe------cCCcEEEEEEC-CCCCEEEEEecCCEEEEEEC
Confidence            99999  887765 57899999999999986321   11111      34579999999 89999999999999999999


Q ss_pred             CCCCCCceeeecCCCCceeeee-----cCccCCCCCCCcEEEEEeCCC----eEEEEEeeC-CCceEEEee--cCCceEE
Q psy17342        250 HGNKAGNVECYEGHEGPVVGLS-----SHRAQGHIDFSHLYLTSSYDW----SVKLWNIKE-NKPVHSFNE--FRDYVMD  317 (401)
Q Consensus       250 ~~~~~~~~~~~~~~~~~v~~i~-----~~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~-~~~~~~~~~--~~~~v~~  317 (401)
                      +..  ..+..+.+|.+.+.+..     |+++      +.+|++++.|+    +|+|||+++ ++++..+..  +.+.+..
T Consensus       197 Rsg--~~i~tl~gH~g~~~s~~v~~~~fs~d------~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p  268 (568)
T PTZ00420        197 RKQ--EIASSFHIHDGGKNTKNIWIDGLGGD------DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIP  268 (568)
T ss_pred             CCC--cEEEEEecccCCceeEEEEeeeEcCC------CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEE
Confidence            854  46778889988765433     3355      57888877764    799999985 667766543  2233333


Q ss_pred             EEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC
Q psy17342        318 VQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG  370 (401)
Q Consensus       318 v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  370 (401)
                      ....+++. ++++|+.|+.|++|++..+.. ..+. ...+..++.+++|.|..
T Consensus       269 ~~D~~tg~-l~lsGkGD~tIr~~e~~~~~~-~~l~-~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        269 HYDESTGL-IYLIGKGDGNCRYYQHSLGSI-RKVN-EYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             eeeCCCCC-EEEEEECCCeEEEEEccCCcE-Eeec-ccccCCCccceEEcccc
Confidence            33444564 889999999999999987532 2222 12356778899999974

>KOG0289|consensus

Probab=99.97  E-value=3e-28  Score=199.75  Aligned_cols=252  Identities=16%  Similarity=0.228  Sum_probs=210.8

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS  197 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd  197 (401)
                      ...++++...|. ...+.+|+.|..+.++|...++..      ..+.+|...|+.+.+  +++...+++++.|..|++|.
T Consensus       219 ~pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l------~~~~Gh~kki~~v~~--~~~~~~v~~aSad~~i~vws  289 (506)
T KOG0289|consen  219 TPGITALDIIPS-SSKILTGGEDKTAVLFDKPSNQIL------ATLKGHTKKITSVKF--HKDLDTVITASADEIIRVWS  289 (506)
T ss_pred             CCCeeEEeecCC-CCcceecCCCCceEEEecchhhhh------hhccCcceEEEEEEe--ccchhheeecCCcceEEeec
Confidence            357888888886 478889999999999999988765      446899999999999  89999999999999999999


Q ss_pred             ccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec--CCCCceeeeecCcc
Q psy17342        198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE--GHEGPVVGLSSHRA  275 (401)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~~  275 (401)
                      ......+..        ...|..+|+.+..+ +.+.+|++++.|+...+.|.+...  .+....  ...-.+++.+|+|+
T Consensus       290 ~~~~s~~~~--------~~~h~~~V~~ls~h-~tgeYllsAs~d~~w~Fsd~~~g~--~lt~vs~~~s~v~~ts~~fHpD  358 (506)
T KOG0289|consen  290 VPLSSEPTS--------SRPHEEPVTGLSLH-PTGEYLLSASNDGTWAFSDISSGS--QLTVVSDETSDVEYTSAAFHPD  358 (506)
T ss_pred             cccccCccc--------cccccccceeeeec-cCCcEEEEecCCceEEEEEccCCc--EEEEEeeccccceeEEeeEcCC
Confidence            875332222        23488999999999 899999999999999999988543  233222  22345899999999


Q ss_pred             CCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee
Q psy17342        276 QGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV  355 (401)
Q Consensus       276 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  355 (401)
                            +.+|.+|..|+.|+|||+.++..+..|.+|.++|..++|+.+| ++|+++.+|+.|++||++..+..+.+..  
T Consensus       359 ------gLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l--  429 (506)
T KOG0289|consen  359 ------GLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQL--  429 (506)
T ss_pred             ------ceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeec--
Confidence                  8999999999999999999999999999999999999999999 4899999999999999999887777654  


Q ss_pred             cCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeee
Q psy17342        356 EGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFI  398 (401)
Q Consensus       356 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~  398 (401)
                      .....+.++.|.+.|++|+.++.|=.|++++-.+..+.++..+
T Consensus       430 ~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~  472 (506)
T KOG0289|consen  430 DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL  472 (506)
T ss_pred             cccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh
Confidence            3345799999999999999998887777777666666666544

>KOG2055|consensus

Probab=99.97  E-value=4.5e-28  Score=200.22  Aligned_cols=287  Identities=16%  Similarity=0.233  Sum_probs=222.8

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCC--CCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK--TTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      .++|++|.|+|..+.|++++          .|++++||.++...  .++.+.+ ...+|.+.+|.|+|...+++++....
T Consensus       213 ~~~I~sv~FHp~~plllvaG----------~d~~lrifqvDGk~N~~lqS~~l-~~fPi~~a~f~p~G~~~i~~s~rrky  281 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAG----------LDGTLRIFQVDGKVNPKLQSIHL-EKFPIQKAEFAPNGHSVIFTSGRRKY  281 (514)
T ss_pred             cCCceEEEecCCCceEEEec----------CCCcEEEEEecCccChhheeeee-ccCccceeeecCCCceEEEecccceE
Confidence            58899999999999999999          69999999998422  2222222 26799999999999768888889999


Q ss_pred             EEEEECCCCCCCceeeccccccCC-CCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccc
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAH-THPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA  221 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  221 (401)
                      ++.||+.+.+.....+.    .++ ...+.....  ++++++|+..+..|.|.+....+ ......+++        .+.
T Consensus       282 ~ysyDle~ak~~k~~~~----~g~e~~~~e~FeV--Shd~~fia~~G~~G~I~lLhakT-~eli~s~Ki--------eG~  346 (514)
T KOG2055|consen  282 LYSYDLETAKVTKLKPP----YGVEEKSMERFEV--SHDSNFIAIAGNNGHIHLLHAKT-KELITSFKI--------EGV  346 (514)
T ss_pred             EEEeeccccccccccCC----CCcccchhheeEe--cCCCCeEEEcccCceEEeehhhh-hhhhheeee--------ccE
Confidence            99999988776543221    233 334556666  89999999999999999988765 233333333        457


Q ss_pred             eEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCce--eeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPV--VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       222 v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v--~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      |..++|+ .++..|++.+.+|.|++||++.+  .+++.+. ..+.|  ++++.+++      +.+||+|+..|.|.|||.
T Consensus       347 v~~~~fs-Sdsk~l~~~~~~GeV~v~nl~~~--~~~~rf~-D~G~v~gts~~~S~n------g~ylA~GS~~GiVNIYd~  416 (514)
T KOG2055|consen  347 VSDFTFS-SDSKELLASGGTGEVYVWNLRQN--SCLHRFV-DDGSVHGTSLCISLN------GSYLATGSDSGIVNIYDG  416 (514)
T ss_pred             EeeEEEe-cCCcEEEEEcCCceEEEEecCCc--ceEEEEe-ecCccceeeeeecCC------CceEEeccCcceEEEecc
Confidence            9999999 89999999999999999999855  5677776 33444  34555566      789999999999999997


Q ss_pred             eC------CCceEEEeecCCceEEEEECCCCCcEEEEEec--CCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc
Q psy17342        300 KE------NKPVHSFNEFRDYVMDVQWSPINPALFATVEV--AGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT  371 (401)
Q Consensus       300 ~~------~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  371 (401)
                      .+      .+|+.++..-...|++++|+|+.+ +||.+|.  +..+++-.+.+......+......-+.|++++|||.|.
T Consensus       417 ~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG  495 (514)
T KOG2055|consen  417 NSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSG  495 (514)
T ss_pred             chhhccCCCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCc
Confidence            54      577888777778999999999997 7777764  56888888876544333332223345699999999999


Q ss_pred             EEEEEecCCcEEEEEec
Q psy17342        372 QLCVGDEKGAITMFDVG  388 (401)
Q Consensus       372 ~l~~~~~dg~v~iw~~~  388 (401)
                      +||.|..+|.|.+|.+.
T Consensus       496 ~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  496 YLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eEEeecCCCceeeEeec
Confidence            99999999999999985

>KOG1036|consensus

Probab=99.96  E-value=5e-28  Score=190.28  Aligned_cols=261  Identities=14%  Similarity=0.264  Sum_probs=205.2

Q ss_pred             hhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEE
Q psy17342          4 AEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLA   83 (401)
Q Consensus         4 ~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   83 (401)
                      ...+..++.+++||++|+++.....    +    +                     ..+.|..++.+++|.++. .+++|
T Consensus        22 ~~~~~~LLvssWDgslrlYdv~~~~----l----~---------------------~~~~~~~plL~c~F~d~~-~~~~G   71 (323)
T KOG1036|consen   22 SPSSSDLLVSSWDGSLRLYDVPANS----L----K---------------------LKFKHGAPLLDCAFADES-TIVTG   71 (323)
T ss_pred             cCcCCcEEEEeccCcEEEEeccchh----h----h---------------------hheecCCceeeeeccCCc-eEEEe
Confidence            3456778888999999999876553    1    0                     123566899999999855 67888


Q ss_pred             EeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccc
Q psy17342         84 SYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSV  163 (401)
Q Consensus        84 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~  163 (401)
                      +          -||.|+.+|+.+++..  ....|..+|.|+.+++ ....+++|+.|++|++||.+.......       
T Consensus        72 ~----------~dg~vr~~Dln~~~~~--~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~-------  131 (323)
T KOG1036|consen   72 G----------LDGQVRRYDLNTGNED--QIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGT-------  131 (323)
T ss_pred             c----------cCceEEEEEecCCcce--eeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccc-------
Confidence            8          6999999999976543  4556899999999998 447899999999999999987443211       


Q ss_pred             cCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCce
Q psy17342        164 MAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGN  243 (401)
Q Consensus       164 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  243 (401)
                      ......|.++..    .++.|+.|+.|..+.+||++....+.+..+      ..-+-.++|+++. |++.-+++++-+|.
T Consensus       132 ~d~~kkVy~~~v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~re------S~lkyqtR~v~~~-pn~eGy~~sSieGR  200 (323)
T KOG1036|consen  132 FDQGKKVYCMDV----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRE------SSLKYQTRCVALV-PNGEGYVVSSIEGR  200 (323)
T ss_pred             cccCceEEEEec----cCCEEEEeecCceEEEEEcccccchhhhcc------ccceeEEEEEEEe-cCCCceEEEeecce
Confidence            233448998876    788899999999999999998666553322      1244578999999 58888999999999


Q ss_pred             EEEEeCCCC--CCCceeeecCCC---------CceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC
Q psy17342        244 VYSACRHGN--KAGNVECYEGHE---------GPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR  312 (401)
Q Consensus       244 i~~~~~~~~--~~~~~~~~~~~~---------~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  312 (401)
                      |.+=.++..  .......|+.|.         -||++|+|+|-      ...|+||+.||.|.+||+.+.+.+..+...+
T Consensus       201 VavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~------~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~  274 (323)
T KOG1036|consen  201 VAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI------HGTFATGGSDGIVNIWDLFNRKRLKQLAKYE  274 (323)
T ss_pred             EEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc------cceEEecCCCceEEEccCcchhhhhhccCCC
Confidence            987544432  122345677775         37999999998      5899999999999999999999999998877


Q ss_pred             CceEEEEECCCCCcEEEEEe
Q psy17342        313 DYVMDVQWSPINPALFATVE  332 (401)
Q Consensus       313 ~~v~~v~~~~~~~~~l~~~~  332 (401)
                      ..|.+++|+.+|. +||.++
T Consensus       275 ~SI~slsfs~dG~-~LAia~  293 (323)
T KOG1036|consen  275 TSISSLSFSMDGS-LLAIAS  293 (323)
T ss_pred             CceEEEEeccCCC-eEEEEe
Confidence            8899999999997 778775

>KOG0646|consensus

Probab=99.96  E-value=6.2e-28  Score=199.72  Aligned_cols=279  Identities=16%  Similarity=0.248  Sum_probs=213.7

Q ss_pred             CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEE
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMS  174 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  174 (401)
                      ...++.+||+.++...-++.......-.++..-. +..++++-..-..|.+|.+.......      ....-.++|.+++
T Consensus        16 d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~-~~yllsaq~~rp~l~vw~i~k~~~~~------q~~v~Pg~v~al~   88 (476)
T KOG0646|consen   16 DPINCIVWDLRTGTSLLQYKGSYLAQAASLTALN-NEYLLSAQLKRPLLHVWEILKKDQVV------QYIVLPGPVHALA   88 (476)
T ss_pred             CCcceeEEecCCCceeEEecCcccccchhhhhhc-hhheeeecccCccccccccCchhhhh------hhcccccceeeee
Confidence            4456999999998776555443122222222211 22344444445679999997765432      1234567899998


Q ss_pred             EeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCC---
Q psy17342        175 VIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHG---  251 (401)
Q Consensus       175 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~---  251 (401)
                      -  +|+|.+++.|+..|.|++|.+.++. ....       +..|-..|+|+.|+ .|+.+|++|+.||.|.+|.+..   
T Consensus        89 s--~n~G~~l~ag~i~g~lYlWelssG~-LL~v-------~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv~  157 (476)
T KOG0646|consen   89 S--SNLGYFLLAGTISGNLYLWELSSGI-LLNV-------LSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLVS  157 (476)
T ss_pred             c--CCCceEEEeecccCcEEEEEecccc-HHHH-------HHhhccceeEEEEe-CCCcEEEecCCCccEEEEEEEeecc
Confidence            8  8999999999899999999998732 2222       23488899999999 9999999999999999997632   


Q ss_pred             ----CCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcE
Q psy17342        252 ----NKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPAL  327 (401)
Q Consensus       252 ----~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~  327 (401)
                          ....++..|..|.-+|+++...+...    ..+++|+|.|.++++||+..+..+.++.. +..+.+++.+|.+. .
T Consensus       158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~----~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~-~  231 (476)
T KOG0646|consen  158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGT----NARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAER-V  231 (476)
T ss_pred             cccCCCccceeeeccCcceeEEEEecCCCc----cceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEccccc-E
Confidence                24567889999999999998876521    47999999999999999999999988876 77899999999997 7


Q ss_pred             EEEEecCCEEEEEeCCCCCC-------------CcceEEeecCCC--CeEEEEecCCCcEEEEEecCCcEEEEEeccCcc
Q psy17342        328 FATVEVAGRVDLWNLNLDTE-------------VPATSAIVEGAP--ALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGI  392 (401)
Q Consensus       328 l~~~~~d~~i~iwd~~~~~~-------------~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~  392 (401)
                      ++.|+.+|.|.+.++.....             ...+....+|..  +|++++.+-||..|++|+.||.|.|||+.+.  
T Consensus       232 ~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~--  309 (476)
T KOG0646|consen  232 VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK--  309 (476)
T ss_pred             EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH--
Confidence            88999999999988764330             112233345655  8999999999999999999999999999987  


Q ss_pred             ceeeeee
Q psy17342        393 ACLKFIT  399 (401)
Q Consensus       393 ~~l~~~~  399 (401)
                      +|++++.
T Consensus       310 Q~iRtl~  316 (476)
T KOG0646|consen  310 QCIRTLQ  316 (476)
T ss_pred             HHHHHHh
Confidence            7888765

>KOG0643|consensus

Probab=99.96  E-value=6.5e-29  Score=191.31  Aligned_cols=249  Identities=15%  Similarity=0.185  Sum_probs=193.2

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEe----
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGT----  138 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~----  138 (401)
                      +|.++|+|++.+-+.+.+++|+          .|.++++||+++++++...  ....+|..+.|++.+ ++++...    
T Consensus        50 GHtGavW~~Did~~s~~liTGS----------AD~t~kLWDv~tGk~la~~--k~~~~Vk~~~F~~~g-n~~l~~tD~~m  116 (327)
T KOG0643|consen   50 GHTGAVWCCDIDWDSKHLITGS----------ADQTAKLWDVETGKQLATW--KTNSPVKRVDFSFGG-NLILASTDKQM  116 (327)
T ss_pred             CCCceEEEEEecCCcceeeecc----------ccceeEEEEcCCCcEEEEe--ecCCeeEEEeeccCC-cEEEEEehhhc
Confidence            5899999999999999999999          8999999999999887655  446899999999977 4444432    


Q ss_pred             -cCCeEEEEECCCCCCCceeec-cccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccccccc
Q psy17342        139 -YSGQIVLWDTRVQKKTPVHRT-PLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQ  216 (401)
Q Consensus       139 -~dg~v~iw~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  216 (401)
                       ..+.|.++|++.......... .+.+..+...++.+-|  .+-++.|++|.+||.|..||++++.......       .
T Consensus       117 g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~W--g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~-------~  187 (327)
T KOG0643|consen  117 GYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALW--GPLGETIIAGHEDGSISIYDARTGKELVDSD-------E  187 (327)
T ss_pred             CcceEEEEEEccCChhhhcccCceEEecCCccceeeeee--cccCCEEEEecCCCcEEEEEcccCceeeech-------h
Confidence             346799999985442221111 1334567789999999  9999999999999999999998744333332       3


Q ss_pred             CCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe-CCCe--
Q psy17342        217 TKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS-YDWS--  293 (401)
Q Consensus       217 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~~--  293 (401)
                      .|...|+.+.++ ++..++++++.|..-++||.+  ....++++. -..||++.+++|..      +.++.|+ .+..  
T Consensus       188 ~h~~~Ind~q~s-~d~T~FiT~s~Dttakl~D~~--tl~v~Kty~-te~PvN~aaisP~~------d~VilgGGqeA~dV  257 (327)
T KOG0643|consen  188 EHSSKINDLQFS-RDRTYFITGSKDTTAKLVDVR--TLEVLKTYT-TERPVNTAAISPLL------DHVILGGGQEAMDV  257 (327)
T ss_pred             hhcccccccccc-CCcceEEecccCccceeeecc--ceeeEEEee-ecccccceeccccc------ceEEecCCceeeee
Confidence            377899999999 899999999999999999998  444667776 56899999999984      4444444 3321  


Q ss_pred             -----------EEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        294 -----------VKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       294 -----------i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                                 .++|++-..+.+...++|-++|++++|+|+|+ .+++|++||.|++..+..
T Consensus       258 TTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk-sYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  258 TTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK-SYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             eeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc-ccccCCCCceEEEEEecc
Confidence                       12222222245667789999999999999998 789999999999987654

>KOG0640|consensus

Probab=99.96  E-value=1.2e-28  Score=193.88  Aligned_cols=222  Identities=16%  Similarity=0.226  Sum_probs=182.1

Q ss_pred             cccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCC---CCccc---------cccccccccCCccceEEEEecc
Q psy17342        162 SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLS---SPQET---------RDLQYNNKQTKNLAVLSLAFPQ  229 (401)
Q Consensus       162 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~---~~~~~---------~~~~~~~~~~~~~~v~~~~~~~  229 (401)
                      .+..|.+++++.+|  +++|.++++|+.|..|++.|++..-   .+.+.         ..+.  .+..|..+|+++.|+ 
T Consensus       107 ylt~HK~~cR~aaf--s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIR--TlYDH~devn~l~FH-  181 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAF--SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIR--TLYDHVDEVNDLDFH-  181 (430)
T ss_pred             EEeecccceeeeee--CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEe--ehhhccCcccceeec-
Confidence            34689999999999  9999999999999999999987211   11111         1111  145688999999999 


Q ss_pred             CCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEe
Q psy17342        230 NDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN  309 (401)
Q Consensus       230 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  309 (401)
                      |...+|++|+.|+.|++||......+..........+|.+++|+|.      |++++.|..-..+++||+.+-++...-.
T Consensus       182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs------GefllvgTdHp~~rlYdv~T~Qcfvsan  255 (430)
T KOG0640|consen  182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS------GEFLLVGTDHPTLRLYDVNTYQCFVSAN  255 (430)
T ss_pred             chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC------CceEEEecCCCceeEEeccceeEeeecC
Confidence            8899999999999999999975433222222235678999999999      8999999999999999999887765543


Q ss_pred             ---ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEE
Q psy17342        310 ---EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFD  386 (401)
Q Consensus       310 ---~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~  386 (401)
                         .|.+.|++|.+++.++ +.++++.||.|+|||--+++++..+... .+...|.+..|..+|+++.+.+.|..|++|+
T Consensus       256 Pd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~A-H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWE  333 (430)
T KOG0640|consen  256 PDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNA-HGGSEVCSAVFTKNGKYILSSGKDSTVKLWE  333 (430)
T ss_pred             cccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhh-cCCceeeeEEEccCCeEEeecCCcceeeeee
Confidence               4889999999999997 8999999999999999988888776542 2356799999999999999999999999999


Q ss_pred             eccCccceeeee
Q psy17342        387 VGEVGIACLKFI  398 (401)
Q Consensus       387 ~~~~~~~~l~~~  398 (401)
                      +.++  ++++.+
T Consensus       334 i~t~--R~l~~Y  343 (430)
T KOG0640|consen  334 ISTG--RMLKEY  343 (430)
T ss_pred             ecCC--ceEEEE
Confidence            9998  666654

>KOG0294|consensus

Probab=99.96  E-value=4.8e-27  Score=185.24  Aligned_cols=273  Identities=16%  Similarity=0.197  Sum_probs=202.4

Q ss_pred             CCceeeeeeeccccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeC
Q psy17342         49 TKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAK  128 (401)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  128 (401)
                      .++.+...|..+  .|..+|++++.+  ++++++|+          .|-+|+|||+........+ +.|.+.|+++.|.+
T Consensus        29 ~~~~l~~lF~~~--aH~~sitavAVs--~~~~aSGs----------sDetI~IYDm~k~~qlg~l-l~HagsitaL~F~~   93 (362)
T KOG0294|consen   29 VKPTLKPLFAFS--AHAGSITALAVS--GPYVASGS----------SDETIHIYDMRKRKQLGIL-LSHAGSITALKFYP   93 (362)
T ss_pred             cceeeecccccc--ccccceeEEEec--ceeEeccC----------CCCcEEEEeccchhhhcce-eccccceEEEEecC
Confidence            344444444443  588999999985  77999999          8999999999976666544 56799999999987


Q ss_pred             CC-CceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccc
Q psy17342        129 FN-PYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQET  207 (401)
Q Consensus       129 ~~-~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~  207 (401)
                      .- ...|++|+.||.|.+|+...-...      -++++|.+.|+.++.  +|.+.+-++.+.|+.++.|++-.+. ....
T Consensus        94 ~~S~shLlS~sdDG~i~iw~~~~W~~~------~slK~H~~~Vt~lsi--HPS~KLALsVg~D~~lr~WNLV~Gr-~a~v  164 (362)
T KOG0294|consen   94 PLSKSHLLSGSDDGHIIIWRVGSWELL------KSLKAHKGQVTDLSI--HPSGKLALSVGGDQVLRTWNLVRGR-VAFV  164 (362)
T ss_pred             CcchhheeeecCCCcEEEEEcCCeEEe------eeecccccccceeEe--cCCCceEEEEcCCceeeeehhhcCc-ccee
Confidence            53 237889999999999999877543      345789999999999  9999999999999999999997632 2333


Q ss_pred             cccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEE
Q psy17342        208 RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLT  287 (401)
Q Consensus       208 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s  287 (401)
                      ..+..        ..+.+.|+ +.+.+++++..+ .|-+|.+....  ...... ....+.++.|..       +..|++
T Consensus       165 ~~L~~--------~at~v~w~-~~Gd~F~v~~~~-~i~i~q~d~A~--v~~~i~-~~~r~l~~~~l~-------~~~L~v  224 (362)
T KOG0294|consen  165 LNLKN--------KATLVSWS-PQGDHFVVSGRN-KIDIYQLDNAS--VFREIE-NPKRILCATFLD-------GSELLV  224 (362)
T ss_pred             eccCC--------cceeeEEc-CCCCEEEEEecc-EEEEEecccHh--Hhhhhh-ccccceeeeecC-------CceEEE
Confidence            33322        34459999 788888887764 56777765332  222222 224456666654       589999


Q ss_pred             EeCCCeEEEEEeeCCCceEEEeecCCceEEEEE--CCCCCcEEEEEecCCEEEEEeCCCCCCCc-ceEEeecCCCCeEEE
Q psy17342        288 SSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQW--SPINPALFATVEVAGRVDLWNLNLDTEVP-ATSAIVEGAPALSRV  364 (401)
Q Consensus       288 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~--~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~  364 (401)
                      |+.|+.|++||.....+...+.+|...|-++.+  .|++ .+|++++.||.|++||++.....+ ..-........++|+
T Consensus       225 G~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl  303 (362)
T KOG0294|consen  225 GGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCL  303 (362)
T ss_pred             ecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEccccccCCcceeEEeecCCcccee
Confidence            999999999999999999999999999999984  4555 589999999999999998763322 111112234555555


Q ss_pred             Ee
Q psy17342        365 TW  366 (401)
Q Consensus       365 ~~  366 (401)
                      ..
T Consensus       304 ~~  305 (362)
T KOG0294|consen  304 RV  305 (362)
T ss_pred             ee
Confidence            54

>KOG0288|consensus

Probab=99.96  E-value=7.2e-29  Score=202.10  Aligned_cols=266  Identities=15%  Similarity=0.211  Sum_probs=209.2

Q ss_pred             hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH   86 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   86 (401)
                      .+.++||+.|..|++|++..++.  ++-..+                        .+..++|++++|.++++.+++++  
T Consensus       187 sdtlatgg~Dr~Ik~W~v~~~k~--~~~~tL------------------------aGs~g~it~~d~d~~~~~~iAas--  238 (459)
T KOG0288|consen  187 SDTLATGGSDRIIKLWNVLGEKS--ELISTL------------------------AGSLGNITSIDFDSDNKHVIAAS--  238 (459)
T ss_pred             cchhhhcchhhhhhhhhcccchh--hhhhhh------------------------hccCCCcceeeecCCCceEEeec--
Confidence            36789999999999999887761  110001                        12347799999999999999999  


Q ss_pred             cCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCC
Q psy17342         87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH  166 (401)
Q Consensus        87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  166 (401)
                              .|+.+++|++...+...++.. |...|+++.|.... ..+++|+.|.+|++||+....+...       .-.
T Consensus       239 --------~d~~~r~Wnvd~~r~~~TLsG-HtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt-------~l~  301 (459)
T KOG0288|consen  239 --------NDKNLRLWNVDSLRLRHTLSG-HTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKT-------VLP  301 (459)
T ss_pred             --------CCCceeeeeccchhhhhhhcc-cccceeeehhhccc-cceeeccccchhhhhhhhhhheecc-------ccc
Confidence                    799999999998877776655 89999999998855 4599999999999999988654311       123


Q ss_pred             CCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEE
Q psy17342        167 THPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYS  246 (401)
Q Consensus       167 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~  246 (401)
                      ...+.+|..    ....++++-.|++|++||++.. .+...+.        -.+.|+++..+ .++..+++++.|..+.+
T Consensus       302 ~S~cnDI~~----~~~~~~SgH~DkkvRfwD~Rs~-~~~~sv~--------~gg~vtSl~ls-~~g~~lLsssRDdtl~v  367 (459)
T KOG0288|consen  302 GSQCNDIVC----SISDVISGHFDKKVRFWDIRSA-DKTRSVP--------LGGRVTSLDLS-MDGLELLSSSRDDTLKV  367 (459)
T ss_pred             cccccceEe----cceeeeecccccceEEEeccCC-ceeeEee--------cCcceeeEeec-cCCeEEeeecCCCceee
Confidence            345566665    2567899999999999999862 2222222        23489999999 89999999999999999


Q ss_pred             EeCCCCCCCceeeecCC----CCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCC--ceEEEEE
Q psy17342        247 ACRHGNKAGNVECYEGH----EGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRD--YVMDVQW  320 (401)
Q Consensus       247 ~~~~~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~v~~  320 (401)
                      .|+++..  ....+.+.    ....+.+.|+|+      +.|+++||.||.|+||++.++++...+.....  .|++++|
T Consensus       368 iDlRt~e--I~~~~sA~g~k~asDwtrvvfSpd------~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W  439 (459)
T KOG0288|consen  368 IDLRTKE--IRQTFSAEGFKCASDWTRVVFSPD------GSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSW  439 (459)
T ss_pred             eeccccc--EEEEeeccccccccccceeEECCC------CceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEE
Confidence            9998654  33444321    234788999999      79999999999999999999999888876444  5999999


Q ss_pred             CCCCCcEEEEEecCCEEEEE
Q psy17342        321 SPINPALFATVEVAGRVDLW  340 (401)
Q Consensus       321 ~~~~~~~l~~~~~d~~i~iw  340 (401)
                      +|.|. .+++++.++.+.+|
T Consensus       440 ~~sG~-~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  440 NPSGS-GLLSADKQKAVTLW  458 (459)
T ss_pred             cCCCc-hhhcccCCcceEec
Confidence            99998 67888899999998

>KOG2445|consensus

Probab=99.96  E-value=5.4e-27  Score=184.36  Aligned_cols=269  Identities=14%  Similarity=0.198  Sum_probs=198.0

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE---EecCCCeeEEEEeC-CCCceEEEEe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE---FFCQSPVLSCCFAK-FNPYLILGGT  138 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~-~~~~~l~~g~  138 (401)
                      .|.+-|.++.|.+.|+++|+++          .|++|+|||.+.....-...   ..|.+.|..+.|.+ .=++.+|+++
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCS----------sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS   80 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCS----------SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS   80 (361)
T ss_pred             CCcceeeeeeecccCceeeecc----------CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe
Confidence            4667899999999999999999          89999999975443332222   23789999999964 3347999999


Q ss_pred             cCCeEEEEECCCCCCCc---eeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcc-----cccc
Q psy17342        139 YSGQIVLWDTRVQKKTP---VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQE-----TRDL  210 (401)
Q Consensus       139 ~dg~v~iw~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-----~~~~  210 (401)
                      .|+++.||.-.......   ......++......|+++.|.+..-|-.+++++.||.++||+.-.......     .+..
T Consensus        81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~  160 (361)
T KOG2445|consen   81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN  160 (361)
T ss_pred             cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence            99999999864222111   111223456778899999998878899999999999999998754322111     1111


Q ss_pred             ccccccCCccceEEEEeccC--CCCeEEEEcCC-----ceEEEEeCCC--CCCCceeeecCCCCceeeeecCccCCCCCC
Q psy17342        211 QYNNKQTKNLAVLSLAFPQN--DVNNFVVGCED-----GNVYSACRHG--NKAGNVECYEGHEGPVVGLSSHRAQGHIDF  281 (401)
Q Consensus       211 ~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d-----~~i~~~~~~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~  281 (401)
                      .......+..+..|+.|+|.  ...+|++|+.+     +.+++|....  ++...+..+.+|..+|++++|.|+-+... 
T Consensus       161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y-  239 (361)
T KOG2445|consen  161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSY-  239 (361)
T ss_pred             ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCce-
Confidence            01012236677889999943  24678888876     4566765543  34445667789999999999999864332 


Q ss_pred             CcEEEEEeCCCeEEEEEeeCC--------------------CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEe
Q psy17342        282 SHLYLTSSYDWSVKLWNIKEN--------------------KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN  341 (401)
Q Consensus       282 ~~~l~s~~~d~~i~iwd~~~~--------------------~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd  341 (401)
                       .+||+++.|| |+||.++..                    +.+..+..|++.|+.+.|+-.|. +|++.|.||+||+|.
T Consensus       240 -~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  240 -HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDDGCVRLWK  316 (361)
T ss_pred             -eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCCceeeehh
Confidence             6899999999 999999731                    23445678999999999999996 899999999999998


Q ss_pred             CCCC
Q psy17342        342 LNLD  345 (401)
Q Consensus       342 ~~~~  345 (401)
                      ..-.
T Consensus       317 any~  320 (361)
T KOG2445|consen  317 ANYN  320 (361)
T ss_pred             hhhh
Confidence            6543

>KOG0299|consensus

Probab=99.96  E-value=2.3e-27  Score=195.99  Aligned_cols=252  Identities=19%  Similarity=0.274  Sum_probs=205.6

Q ss_pred             EEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCC----ce------eeccccc--cCCCCcEEEEEEeecCCc
Q psy17342        114 EFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKT----PV------HRTPLSV--MAHTHPVFCMSVIGTQNA  181 (401)
Q Consensus       114 ~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~----~~------~~~~~~~--~~~~~~v~~~~~~~~~~~  181 (401)
                      ...|.-++++++++|++ .+.++++.+|+|.-|++.++...    +.      ...+...  ..|...+.+++.  ++++
T Consensus       138 ~~~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av--S~Dg  214 (479)
T KOG0299|consen  138 IGKHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV--SSDG  214 (479)
T ss_pred             eccccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE--cCCC
Confidence            34578899999999987 68889999999999999877633    11      1111222  378999999999  9999


Q ss_pred             eEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec
Q psy17342        182 HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE  261 (401)
Q Consensus       182 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~  261 (401)
                      .+|++|+.|..|.||+.++.. +.+.       +.+|...|.+++|- .....+++++.|+.|.+|++..  ...+.++.
T Consensus       215 kylatgg~d~~v~Iw~~~t~e-hv~~-------~~ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~~--~s~vetly  283 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLE-HVKV-------FKGHRGAVSSLAFR-KGTSELYSASADRSVKVWSIDQ--LSYVETLY  283 (479)
T ss_pred             cEEEecCCCceEEEecCcccc-hhhc-------ccccccceeeeeee-cCccceeeeecCCceEEEehhH--hHHHHHHh
Confidence            999999999999999998733 2222       35599999999999 7888999999999999999984  44688899


Q ss_pred             CCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEe
Q psy17342        262 GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN  341 (401)
Q Consensus       262 ~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd  341 (401)
                      +|++.|.+|.....      .+.+-.|+.|+++++|++.. .....+.+|.+.+-|++|-.+.  .|++|+.+|.|.+|+
T Consensus       284 GHqd~v~~IdaL~r------eR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs  354 (479)
T KOG0299|consen  284 GHQDGVLGIDALSR------ERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWS  354 (479)
T ss_pred             CCccceeeechhcc------cceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEee
Confidence            99999999988776      46666666999999999953 3445677888899999999886  489999999999999


Q ss_pred             CCCCCCCcceEEeecC-----------CCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        342 LNLDTEVPATSAIVEG-----------APALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       342 ~~~~~~~~~~~~~~~~-----------~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      +...+++.+..  .+|           ...|++++..|...++|+|+.+|.|++|.+.++
T Consensus       355 ~~KKkplf~~~--~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  355 LLKKKPLFTSR--LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ecccCceeEee--ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            98877554333  232           227899999999999999999999999999998

>KOG0268|consensus

Probab=99.96  E-value=6.7e-29  Score=199.12  Aligned_cols=243  Identities=14%  Similarity=0.210  Sum_probs=199.3

Q ss_pred             EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEE
Q psy17342        115 FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLC  194 (401)
Q Consensus       115 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~  194 (401)
                      .+|...|.|++=+|.....+++|+.||.|+|||+....+.      ..+..|.+.|..|++  ..  ..+++++.|.+|+
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~------~~f~AH~G~V~Gi~v--~~--~~~~tvgdDKtvK  132 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI------RTFKAHEGLVRGICV--TQ--TSFFTVGDDKTVK  132 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh------heeecccCceeeEEe--cc--cceEEecCCccee
Confidence            4678999999999976678999999999999999887654      456899999999999  33  7899999999999


Q ss_pred             EeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCc
Q psy17342        195 SWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR  274 (401)
Q Consensus       195 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  274 (401)
                      .|.+..  .+..++.        ....+..+.-+ ...+.++++++  .|.+||..-.  .++..+.--...|.++.|+|
T Consensus       133 ~wk~~~--~p~~til--------g~s~~~gIdh~-~~~~~FaTcGe--~i~IWD~~R~--~Pv~smswG~Dti~svkfNp  197 (433)
T KOG0268|consen  133 QWKIDG--PPLHTIL--------GKSVYLGIDHH-RKNSVFATCGE--QIDIWDEQRD--NPVSSMSWGADSISSVKFNP  197 (433)
T ss_pred             eeeccC--Ccceeee--------ccccccccccc-cccccccccCc--eeeecccccC--CccceeecCCCceeEEecCC
Confidence            999874  2333322        23355666655 55677777765  6889998733  46778877788899999999


Q ss_pred             cCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe
Q psy17342        275 AQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAI  354 (401)
Q Consensus       275 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  354 (401)
                      ..     ..+|++|++|+.|.+||++++++++.+.. ...-+.++|+|.. ..|+++++|..++.||++.-..  .+...
T Consensus       198 vE-----TsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~--p~~v~  268 (433)
T KOG0268|consen  198 VE-----TSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSR--PLNVH  268 (433)
T ss_pred             Cc-----chheeeeccCCceEEEecccCCccceeee-eccccceecCccc-cceeeccccccceehhhhhhcc--cchhh
Confidence            86     68899999999999999999999988765 5566899999966 4799999999999999987543  23334


Q ss_pred             ecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        355 VEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       355 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      .+|.++|.++.|||.|+-+++|+.|.+|+||.++.+.
T Consensus       269 ~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~  305 (433)
T KOG0268|consen  269 KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH  305 (433)
T ss_pred             cccceeEEEeccCCCcchhccccccceEEEeecCCCc
Confidence            5788999999999999999999999999999998763

>KOG1446|consensus

Probab=99.96  E-value=3.4e-26  Score=180.82  Aligned_cols=246  Identities=15%  Similarity=0.135  Sum_probs=188.2

Q ss_pred             cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC--CCcEE
Q psy17342        117 CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN--DGRLC  194 (401)
Q Consensus       117 ~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~  194 (401)
                      ....|+++.|+++| .++++++.|.+++|||..++.....      +..+.-.+..++|  ......++.++.  |.+|+
T Consensus        13 ~~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~g~~~~t------i~skkyG~~~~~F--th~~~~~i~sStk~d~tIr   83 (311)
T KOG1446|consen   13 TNGKINSLDFSDDG-LLLITSSEDDSLRLYDSLSGKQVKT------INSKKYGVDLACF--THHSNTVIHSSTKEDDTIR   83 (311)
T ss_pred             CCCceeEEEecCCC-CEEEEecCCCeEEEEEcCCCceeeE------eecccccccEEEE--ecCCceEEEccCCCCCceE
Confidence            36789999999988 6777788899999999998876532      3455557778888  445555555555  88999


Q ss_pred             EeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCc
Q psy17342        195 SWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR  274 (401)
Q Consensus       195 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  274 (401)
                      ..++.+   ....   ..  +.+|...|.+++.+ |-+..+++++.|+.|++||++..+  +...+....  -..++|.|
T Consensus        84 yLsl~d---Nkyl---RY--F~GH~~~V~sL~~s-P~~d~FlS~S~D~tvrLWDlR~~~--cqg~l~~~~--~pi~AfDp  150 (311)
T KOG1446|consen   84 YLSLHD---NKYL---RY--FPGHKKRVNSLSVS-PKDDTFLSSSLDKTVRLWDLRVKK--CQGLLNLSG--RPIAAFDP  150 (311)
T ss_pred             EEEeec---CceE---EE--cCCCCceEEEEEec-CCCCeEEecccCCeEEeeEecCCC--CceEEecCC--CcceeECC
Confidence            999875   1111   11  56799999999999 666999999999999999999544  333332222  23578999


Q ss_pred             cCCCCCCCcEEEEEeCCCeEEEEEeeC--CCceEEEeec---CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCc
Q psy17342        275 AQGHIDFSHLYLTSSYDWSVKLWNIKE--NKPVHSFNEF---RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVP  349 (401)
Q Consensus       275 ~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~---~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  349 (401)
                      .      |-++|++.....|++||++.  +.|..++...   ....+.+.|||+|+. ++.+...+.+++.|.-++....
T Consensus       151 ~------GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~-iLlsT~~s~~~~lDAf~G~~~~  223 (311)
T KOG1446|consen  151 E------GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS-ILLSTNASFIYLLDAFDGTVKS  223 (311)
T ss_pred             C------CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE-EEEEeCCCcEEEEEccCCcEee
Confidence            8      78899888777999999986  3466665543   567899999999995 5556678899999999998776


Q ss_pred             ceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        350 ATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       350 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      .+........--....|+||++++++|+.||+|.+|+++++.
T Consensus       224 tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~  265 (311)
T KOG1446|consen  224 TFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK  265 (311)
T ss_pred             eEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCc
Confidence            666543333333678999999999999999999999999884

>KOG0639|consensus

Probab=99.96  E-value=1.9e-27  Score=198.63  Aligned_cols=287  Identities=10%  Similarity=0.184  Sum_probs=227.9

Q ss_pred             cccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCC-CCCceEEEe---cCCCeeEEEEeCCCCceEE
Q psy17342         60 EKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK-KTTPEFEFF---CQSPVLSCCFAKFNPYLIL  135 (401)
Q Consensus        60 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~-~~~~~~~~~---~~~~v~~~~~~~~~~~~l~  135 (401)
                      ..+.|.+-|.++..|...+++.+|+           .|-|+|||+... ...+...+.   ...-|.++..+|++ +.|+
T Consensus       414 ~tL~HGEvVcAvtIS~~trhVyTgG-----------kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg-rtLi  481 (705)
T KOG0639|consen  414 NTLAHGEVVCAVTISNPTRHVYTGG-----------KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG-RTLI  481 (705)
T ss_pred             hhhccCcEEEEEEecCCcceeEecC-----------CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCC-ceEE
Confidence            3456889999999999999999999           899999999742 222222222   35678999999988 5666


Q ss_pred             EEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccc
Q psy17342        136 GGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNK  215 (401)
Q Consensus       136 ~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  215 (401)
                      +|+.-.++.|||+........    ..+........+++.  +||.+..+++..||.|.|||++.   ......     +
T Consensus       482 vGGeastlsiWDLAapTprik----aeltssapaCyALa~--spDakvcFsccsdGnI~vwDLhn---q~~Vrq-----f  547 (705)
T KOG0639|consen  482 VGGEASTLSIWDLAAPTPRIK----AELTSSAPACYALAI--SPDAKVCFSCCSDGNIAVWDLHN---QTLVRQ-----F  547 (705)
T ss_pred             eccccceeeeeeccCCCcchh----hhcCCcchhhhhhhc--CCccceeeeeccCCcEEEEEccc---ceeeec-----c
Confidence            777889999999987654211    122333445677777  99999999999999999999985   122222     5


Q ss_pred             cCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEE
Q psy17342        216 QTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVK  295 (401)
Q Consensus       216 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~  295 (401)
                      ++|...+.||.++ +++..|.+|+.|..||.||++....  +... .....|.++.++|.      +++++.|-..+.+.
T Consensus       548 qGhtDGascIdis-~dGtklWTGGlDntvRcWDlregrq--lqqh-dF~SQIfSLg~cP~------~dWlavGMens~ve  617 (705)
T KOG0639|consen  548 QGHTDGASCIDIS-KDGTKLWTGGLDNTVRCWDLREGRQ--LQQH-DFSSQIFSLGYCPT------GDWLAVGMENSNVE  617 (705)
T ss_pred             cCCCCCceeEEec-CCCceeecCCCccceeehhhhhhhh--hhhh-hhhhhheecccCCC------ccceeeecccCcEE
Confidence            6799999999999 8999999999999999999985432  2111 13478999999999      79999999999998


Q ss_pred             EEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEE
Q psy17342        296 LWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCV  375 (401)
Q Consensus       296 iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  375 (401)
                      |-... +.....+..|+..|.++.|.+.|+ ++++.+.|+.+..|...-+..+..    ......|.++..|.|.++|++
T Consensus       618 vlh~s-kp~kyqlhlheScVLSlKFa~cGk-wfvStGkDnlLnawrtPyGasiFq----skE~SsVlsCDIS~ddkyIVT  691 (705)
T KOG0639|consen  618 VLHTS-KPEKYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQ----SKESSSVLSCDISFDDKYIVT  691 (705)
T ss_pred             EEecC-CccceeecccccEEEEEEecccCc-eeeecCchhhhhhccCccccceee----ccccCcceeeeeccCceEEEe
Confidence            87764 444566778999999999999998 789999999999999887764433    245678999999999999999


Q ss_pred             EecCCcEEEEEec
Q psy17342        376 GDEKGAITMFDVG  388 (401)
Q Consensus       376 ~~~dg~v~iw~~~  388 (401)
                      |+.|....||.+.
T Consensus       692 GSGdkkATVYeV~  704 (705)
T KOG0639|consen  692 GSGDKKATVYEVI  704 (705)
T ss_pred             cCCCcceEEEEEe
Confidence            9999999999873

>KOG0294|consensus

Probab=99.96  E-value=2.1e-26  Score=181.62  Aligned_cols=240  Identities=11%  Similarity=0.150  Sum_probs=189.5

Q ss_pred             cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEe
Q psy17342        117 CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSW  196 (401)
Q Consensus       117 ~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~w  196 (401)
                      |.+++++++.+  + .++++|+.|-+|+|||+.......      .+..|.+.|+++.|.+......|++|+.||.|.+|
T Consensus        42 H~~sitavAVs--~-~~~aSGssDetI~IYDm~k~~qlg------~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw  112 (362)
T KOG0294|consen   42 HAGSITALAVS--G-PYVASGSSDETIHIYDMRKRKQLG------ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW  112 (362)
T ss_pred             cccceeEEEec--c-eeEeccCCCCcEEEEeccchhhhc------ceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence            78899999996  3 799999999999999998876542      24679999999999544444599999999999999


Q ss_pred             eccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccC
Q psy17342        197 SLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQ  276 (401)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  276 (401)
                      +...-   .   .+..  +.+|...|+.++++ |.+++.++.+.|+.+++||+-..+...+..+. +..  +.+.|+|. 
T Consensus       113 ~~~~W---~---~~~s--lK~H~~~Vt~lsiH-PS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~a--t~v~w~~~-  179 (362)
T KOG0294|consen  113 RVGSW---E---LLKS--LKAHKGQVTDLSIH-PSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKA--TLVSWSPQ-  179 (362)
T ss_pred             EcCCe---E---Eeee--ecccccccceeEec-CCCceEEEEcCCceeeeehhhcCccceeeccC-Ccc--eeeEEcCC-
Confidence            98741   1   1112  45588899999999 89999999999999999998755443343333 222  34899998 


Q ss_pred             CCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeec
Q psy17342        277 GHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVE  356 (401)
Q Consensus       277 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  356 (401)
                           +.+|+.++. ..|-||.+.+.+...++.. ...+.++.|-..+  .+++|+.|+.|++||..+......   ..+
T Consensus       180 -----Gd~F~v~~~-~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l~~~--~L~vG~d~~~i~~~D~ds~~~~~~---~~A  247 (362)
T KOG0294|consen  180 -----GDHFVVSGR-NKIDIYQLDNASVFREIEN-PKRILCATFLDGS--ELLVGGDNEWISLKDTDSDTPLTE---FLA  247 (362)
T ss_pred             -----CCEEEEEec-cEEEEEecccHhHhhhhhc-cccceeeeecCCc--eEEEecCCceEEEeccCCCcccee---eec
Confidence                 788888774 5699999988777766665 3557777777665  588899999999999988554333   358


Q ss_pred             CCCCeEEEEe--cCCCcEEEEEecCCcEEEEEeccC
Q psy17342        357 GAPALSRVTW--TPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       357 ~~~~v~~~~~--s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      |...|-.+.+  .|++.+|+++++||.|+|||++..
T Consensus       248 H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  248 HENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             chhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            8899998885  467899999999999999999876

>KOG0307|consensus

Probab=99.96  E-value=2.2e-28  Score=223.18  Aligned_cols=306  Identities=18%  Similarity=0.285  Sum_probs=231.3

Q ss_pred             eEEEEecCCCC-CeEEEEeccCCCCCCCCCcEEEEEeCcCCCC----CceEEEecCCCeeEEEEeCCCCc---eEEEEec
Q psy17342         68 VTYMDWSTQHP-ELLLASYHRNKEAPNEPDGVCLIWNTKFKKT----TPEFEFFCQSPVLSCCFAKFNPY---LILGGTY  139 (401)
Q Consensus        68 v~~~~~~~~~~-~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~---~l~~g~~  139 (401)
                      -..++|+|++. ++++|......-.+-+.+.++-||.+.....    .+.-.+......+.++|.+.+..   +|+.|..
T Consensus         9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~e   88 (1049)
T KOG0307|consen    9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLE   88 (1049)
T ss_pred             cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeecccc
Confidence            34578999998 5555543332222334577777877653211    22223334678899999997766   6999999


Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCce-EEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAH-NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      ||.|.+||...-..........+...|.+.|..+.|  ++... .|++|+.||.|.|||+.....+...-      ....
T Consensus        89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDf--N~~q~nlLASGa~~geI~iWDlnn~~tP~~~~------~~~~  160 (1049)
T KOG0307|consen   89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDF--NPFQGNLLASGADDGEILIWDLNKPETPFTPG------SQAP  160 (1049)
T ss_pred             CCceEEecchhhccCcchHHHhhhcccCCceeeeec--cccCCceeeccCCCCcEEEeccCCcCCCCCCC------CCCC
Confidence            999999998763111111112345789999999999  66655 99999999999999998754443332      1225


Q ss_pred             ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCC--CceeeeecCccCCCCCCCcEEEEEeCCC---e
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHE--GPVVGLSSHRAQGHIDFSHLYLTSSYDW---S  293 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~--~~v~~i~~~~~~~~~~~~~~l~s~~~d~---~  293 (401)
                      ...|.+++|+......|++++.+|.+.+||++.++  .+..+..+.  ..+..++|+|+.     ...+++++.|.   .
T Consensus       161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~--pii~ls~~~~~~~~S~l~WhP~~-----aTql~~As~dd~~Pv  233 (1049)
T KOG0307|consen  161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK--PIIKLSDTPGRMHCSVLAWHPDH-----ATQLLVASGDDSAPV  233 (1049)
T ss_pred             cccceEeccchhhhHHhhccCCCCCceeccccCCC--cccccccCCCccceeeeeeCCCC-----ceeeeeecCCCCCce
Confidence            67899999997778889999999999999999653  444444443  457899999997     56777777654   6


Q ss_pred             EEEEEeeC-CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc-
Q psy17342        294 VKLWNIKE-NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT-  371 (401)
Q Consensus       294 i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-  371 (401)
                      |.+||+|. ..+++++++|...|.++.|++.+..++++++.|+.|.+|+.++++.+..+.   .....+..+.|+|... 
T Consensus       234 iqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p---~~~nW~fdv~w~pr~P~  310 (1049)
T KOG0307|consen  234 IQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP---AQGNWCFDVQWCPRNPS  310 (1049)
T ss_pred             eEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC---CCCcceeeeeecCCCcc
Confidence            99999986 568888999999999999999997799999999999999999988766553   3467899999999876 


Q ss_pred             EEEEEecCCcEEEEEeccCc
Q psy17342        372 QLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       372 ~l~~~~~dg~v~iw~~~~~~  391 (401)
                      .+++++-||.|.||.+.+..
T Consensus       311 ~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  311 VMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             hhhhheeccceeeeeeecCC
Confidence            78888999999999998764

>KOG2445|consensus

Probab=99.96  E-value=1.2e-26  Score=182.35  Aligned_cols=268  Identities=16%  Similarity=0.198  Sum_probs=199.0

Q ss_pred             EEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCc
Q psy17342        113 FEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR  192 (401)
Q Consensus       113 ~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~  192 (401)
                      +...|..-|+++.|.+.| +.+++|+.|++|+|||.+.....-...  ...+.|.+.|..+.|..+.-|+.+++++.|++
T Consensus         8 i~s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~~W~~T--s~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt   84 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSGTWSCT--SSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT   84 (361)
T ss_pred             cccCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCCceEEe--eeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence            445577889999999977 899999999999999986655432222  34578999999999987777999999999999


Q ss_pred             EEEeeccCCCCCc---cccccccccccCCccceEEEEeccCC-CCeEEEEcCCceEEEEeCCCCCC----Cceeee----
Q psy17342        193 LCSWSLEMLSSPQ---ETRDLQYNNKQTKNLAVLSLAFPQND-VNNFVVGCEDGNVYSACRHGNKA----GNVECY----  260 (401)
Q Consensus       193 i~~wd~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~----~~~~~~----  260 (401)
                      +.+|.-.......   .-.....  +......|+.+.|.|.. +-.+++++.||.+|+|+.-....    .+...+    
T Consensus        85 v~iWEE~~~~~~~~~~~Wv~~tt--l~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~  162 (361)
T KOG2445|consen   85 VSIWEEQEKSEEAHGRRWVRRTT--LVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI  162 (361)
T ss_pred             eeeeeecccccccccceeEEEEE--eecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc
Confidence            9999863211111   1111111  34467889999999643 56689999999999997643111    111122    


Q ss_pred             ---cCCCCceeeeecCccCCCCCCCcEEEEEeCC-----CeEEEEEeeCC----CceEEEeecCCceEEEEECCCC---C
Q psy17342        261 ---EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD-----WSVKLWNIKEN----KPVHSFNEFRDYVMDVQWSPIN---P  325 (401)
Q Consensus       261 ---~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~----~~~~~~~~~~~~v~~v~~~~~~---~  325 (401)
                         ..+..+..|+.|+|....   ..+||.|+.+     +.++||.....    ..+.++.+|..+|++++|.|+-   .
T Consensus       163 ~pp~~~~~~~~CvsWn~sr~~---~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y  239 (361)
T KOG2445|consen  163 DPPGKNKQPCFCVSWNPSRMH---EPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSY  239 (361)
T ss_pred             CCcccccCcceEEeecccccc---CceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCce
Confidence               246678899999987533   5788888855     48999987543    3455677899999999999973   2


Q ss_pred             cEEEEEecCCEEEEEeCCCCC-----------------CCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEec
Q psy17342        326 ALFATVEVAGRVDLWNLNLDT-----------------EVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       326 ~~l~~~~~d~~i~iwd~~~~~-----------------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~  388 (401)
                      ++||+++.|| |+||.++...                 .+..+.....|...|+.++|+-.|..|++.+.||.|++|...
T Consensus       240 ~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  240 HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            5899999999 9999987411                 112233345678899999999999999999999999999865


Q ss_pred             c
Q psy17342        389 E  389 (401)
Q Consensus       389 ~  389 (401)
                      -
T Consensus       319 y  319 (361)
T KOG2445|consen  319 Y  319 (361)
T ss_pred             h
Confidence            3

>KOG0269|consensus

Probab=99.96  E-value=5.3e-28  Score=211.73  Aligned_cols=249  Identities=19%  Similarity=0.251  Sum_probs=200.2

Q ss_pred             cceEEEEecCC-CCCeEEEEeccCCCCCCCCCcEEEEEeCcC---CCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC
Q psy17342         66 RNVTYMDWSTQ-HPELLLASYHRNKEAPNEPDGVCLIWNTKF---KKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG  141 (401)
Q Consensus        66 ~~v~~~~~~~~-~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg  141 (401)
                      -.+..+.|+.. .++||+++          ..|.|.+||+..   .+.+. ....|...++++.|++..+++|++|+.||
T Consensus        88 ~S~~DVkW~~~~~NlIAT~s----------~nG~i~vWdlnk~~rnk~l~-~f~EH~Rs~~~ldfh~tep~iliSGSQDg  156 (839)
T KOG0269|consen   88 YSAADVKWGQLYSNLIATCS----------TNGVISVWDLNKSIRNKLLT-VFNEHERSANKLDFHSTEPNILISGSQDG  156 (839)
T ss_pred             eehhhcccccchhhhheeec----------CCCcEEEEecCccccchhhh-HhhhhccceeeeeeccCCccEEEecCCCc
Confidence            44666778753 34577777          799999999985   22221 22357899999999999999999999999


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccc
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA  221 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  221 (401)
                      .|++||++.....      .++.+....|+++.|.+. .+..|+++.+.|.+++||++....+...       +..|.++
T Consensus       157 ~vK~~DlR~~~S~------~t~~~nSESiRDV~fsp~-~~~~F~s~~dsG~lqlWDlRqp~r~~~k-------~~AH~Gp  222 (839)
T KOG0269|consen  157 TVKCWDLRSKKSK------STFRSNSESIRDVKFSPG-YGNKFASIHDSGYLQLWDLRQPDRCEKK-------LTAHNGP  222 (839)
T ss_pred             eEEEEeeeccccc------ccccccchhhhceeeccC-CCceEEEecCCceEEEeeccCchhHHHH-------hhcccCc
Confidence            9999999988765      334567889999999643 3778999999999999999964433322       4559999


Q ss_pred             eEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC--CCeEEEEEe
Q psy17342        222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY--DWSVKLWNI  299 (401)
Q Consensus       222 v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~--d~~i~iwd~  299 (401)
                      |.|+.|+ |++.+||+|+.|+.|++|+..+.....+.++. ...+|.++.|-|..     ...|++++.  |-.|+|||+
T Consensus       223 V~c~nwh-Pnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~-----~~hLAtcsmv~dtsV~VWDv  295 (839)
T KOG0269|consen  223 VLCLNWH-PNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPAR-----SYHLATCSMVVDTSVHVWDV  295 (839)
T ss_pred             eEEEeec-CCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCc-----cchhhhhhccccceEEEEee
Confidence            9999999 69999999999999999999876665666655 46789999999987     678888876  889999999


Q ss_pred             eCC-CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342        300 KEN-KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT  346 (401)
Q Consensus       300 ~~~-~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~  346 (401)
                      +.. -|..++..|...++.++|.......+.+++.||.|..-.+++..
T Consensus       296 rRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  296 RRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             ccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence            754 46778889999999999988655689999999988776665543

>KOG0321|consensus

Probab=99.96  E-value=3.3e-27  Score=202.53  Aligned_cols=269  Identities=19%  Similarity=0.301  Sum_probs=196.7

Q ss_pred             eccccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCce-EEEecCCCeeEEEEeCCCCceEEE
Q psy17342         58 FDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE-FEFFCQSPVLSCCFAKFNPYLILG  136 (401)
Q Consensus        58 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~  136 (401)
                      +...+.|..+|.++.|-|....|++++          .|.++++||+++.+.... ..++|...|.+++|.|+++..+++
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsas----------GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~t  162 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSAS----------GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCT  162 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEcc----------CCceeeeeeeccceeecceeecccccccchhhhccCCCcceee
Confidence            344457889999999999666677777          899999999998766554 356789999999999999999999


Q ss_pred             EecCCeEEEEECCCCCCCc----------------eeecc-----ccccCCCCcEEE---EEEeecCCceEEEEEeC-CC
Q psy17342        137 GTYSGQIVLWDTRVQKKTP----------------VHRTP-----LSVMAHTHPVFC---MSVIGTQNAHNLISISN-DG  191 (401)
Q Consensus       137 g~~dg~v~iw~~~~~~~~~----------------~~~~~-----~~~~~~~~~v~~---~~~~~~~~~~~l~s~~~-dg  191 (401)
                      |+.||.|.|||++-.....                ....+     ..-..+...|.+   +.+  ..|...|++++. |+
T Consensus       163 GgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~--fkDe~tlaSaga~D~  240 (720)
T KOG0321|consen  163 GGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVL--FKDESTLASAGAADS  240 (720)
T ss_pred             ccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEE--EeccceeeeccCCCc
Confidence            9999999999987443100                00000     111234444444   333  478889999988 99


Q ss_pred             cEEEeeccCCCCCccccccccccccCC---ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCcee
Q psy17342        192 RLCSWSLEMLSSPQETRDLQYNNKQTK---NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVV  268 (401)
Q Consensus       192 ~i~~wd~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~  268 (401)
                      .|++||+++..............+..+   ...+.++... ..|.+|.+.+.|+.|++|++......++..+.++...-.
T Consensus       241 ~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD-ssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf  319 (720)
T KOG0321|consen  241 TIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD-SSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSF  319 (720)
T ss_pred             ceEEEeecccccccccCCCcccCccCcccceeeeEEEEec-CCCCeEEEEecCCcEEEEeccccCcCchhhccCccccee
Confidence            999999987433222211111111112   5577888887 778888888889999999998877667777766543222


Q ss_pred             --eeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC-CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342        269 --GLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN-KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD  345 (401)
Q Consensus       269 --~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~  345 (401)
                        .-..+|+      +.++++|+.|...++|.+.+. .+...+.+|...|++++|.|..-.=++++++|..++||++..+
T Consensus       320 ~vks~lSpd------~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  320 YVKSELSPD------DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             eeeeecCCC------CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence              1234566      799999999999999999874 4556678899999999998865444778899999999999654

>KOG0283|consensus

Probab=99.96  E-value=8.8e-28  Score=212.79  Aligned_cols=268  Identities=16%  Similarity=0.226  Sum_probs=193.4

Q ss_pred             CchhhhhccccccccccccccccccCCCCC---------------------CCCccc-c---c--cccCCCCCCCCCcee
Q psy17342          1 MDWAEAGESQISGTLHGLQADWNEEGDPGL---------------------PQLPQD-L---Q--FDMTGDEKSSTKLSF   53 (401)
Q Consensus         1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~---------------------~~~~~~-~---~--~~~~~~~~~~~~~~~   53 (401)
                      |...--|.+||+|+.||.||||.+......                     |..... -   +  ........+...++.
T Consensus       273 mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~  352 (712)
T KOG0283|consen  273 MKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPL  352 (712)
T ss_pred             EEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCC
Confidence            445567899999999999999977652110                     001111 0   0  000000111122222


Q ss_pred             eee-----eeccccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeC
Q psy17342         54 CRQ-----FFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAK  128 (401)
Q Consensus        54 ~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  128 (401)
                      ...     -+..-.+|.+.|.++.||.++ +|++++          .|.+|+||++....++.  .+.|..-|+|++|+|
T Consensus       353 ~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSS----------MDKTVRLWh~~~~~CL~--~F~HndfVTcVaFnP  419 (712)
T KOG0283|consen  353 KAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSS----------MDKTVRLWHPGRKECLK--VFSHNDFVTCVAFNP  419 (712)
T ss_pred             ccccccccchhhhhccchhheecccccCC-eeEecc----------ccccEEeecCCCcceee--EEecCCeeEEEEecc
Confidence            211     122333699999999999887 889888          89999999999777764  568899999999999


Q ss_pred             CCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccc
Q psy17342        129 FNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETR  208 (401)
Q Consensus       129 ~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~  208 (401)
                      .+.+++++|+-||.|+||++...+..       ....-..-|++++|  .|+|+..+.|+.+|.+++|+..... .....
T Consensus       420 vDDryFiSGSLD~KvRiWsI~d~~Vv-------~W~Dl~~lITAvcy--~PdGk~avIGt~~G~C~fY~t~~lk-~~~~~  489 (712)
T KOG0283|consen  420 VDDRYFISGSLDGKVRLWSISDKKVV-------DWNDLRDLITAVCY--SPDGKGAVIGTFNGYCRFYDTEGLK-LVSDF  489 (712)
T ss_pred             cCCCcEeecccccceEEeecCcCeeE-------eehhhhhhheeEEe--ccCCceEEEEEeccEEEEEEccCCe-EEEee
Confidence            98899999999999999999887653       12334478999999  9999999999999999999987532 22222


Q ss_pred             cccc--ccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCc--eeeeecCccCCCCCCCcE
Q psy17342        209 DLQY--NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGP--VVGLSSHRAQGHIDFSHL  284 (401)
Q Consensus       209 ~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~--v~~i~~~~~~~~~~~~~~  284 (401)
                      .+..  .+...+. .|+.+.|.|.+...+++.+.|..|+|+|.+..  .++..|+|+...  -....|..+      +++
T Consensus       490 ~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~--~lv~KfKG~~n~~SQ~~Asfs~D------gk~  560 (712)
T KOG0283|consen  490 HIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK--DLVHKFKGFRNTSSQISASFSSD------GKH  560 (712)
T ss_pred             eEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccch--hhhhhhcccccCCcceeeeEccC------CCE
Confidence            2111  1112233 89999999878888999999999999999743  357777765432  245577776      899


Q ss_pred             EEEEeCCCeEEEEEee
Q psy17342        285 YLTSSYDWSVKLWNIK  300 (401)
Q Consensus       285 l~s~~~d~~i~iwd~~  300 (401)
                      |++++.|..|+||++.
T Consensus       561 IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  561 IVSASEDSWVYIWKND  576 (712)
T ss_pred             EEEeecCceEEEEeCC
Confidence            9999999999999974

>KOG1408|consensus

Probab=99.96  E-value=2.9e-27  Score=205.56  Aligned_cols=308  Identities=12%  Similarity=0.110  Sum_probs=222.8

Q ss_pred             ccccccccccccccccccCCCCCC----CC-ccc-cc--cccCCC-CCCCCCceeeeeeeccccccccceEEEEecCCCC
Q psy17342          8 ESQISGTLHGLQADWNEEGDPGLP----QL-PQD-LQ--FDMTGD-EKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHP   78 (401)
Q Consensus         8 ~~~~~g~~~g~~~vw~~~~~~~~~----~~-~~~-~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   78 (401)
                      +..+|.+.|++||+|+++......    .+ ..+ .+  +++... ........+...--......+..|.+++.+|+|+
T Consensus       393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq  472 (1080)
T KOG1408|consen  393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ  472 (1080)
T ss_pred             cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc
Confidence            347889999999999988732110    11 011 11  221111 0001111111111112223457899999999999


Q ss_pred             CeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCC--CCceEEEEecCCeEEEEECCCCCCCce
Q psy17342         79 ELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF--NPYLILGGTYSGQIVLWDTRVQKKTPV  156 (401)
Q Consensus        79 ~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~g~~dg~v~iw~~~~~~~~~~  156 (401)
                      +||+|.          ..|+++||++...+....+ -.|...|.|+.|+..  +..+|++++.|.-|.|||+...-..  
T Consensus       473 hLAsGD----------r~GnlrVy~Lq~l~~~~~~-eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l--  539 (1080)
T KOG1408|consen  473 HLASGD----------RGGNLRVYDLQELEYTCFM-EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL--  539 (1080)
T ss_pred             eecccC----------ccCceEEEEehhhhhhhhe-ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch--
Confidence            999998          7999999999865544333 347999999999852  3369999999999999999765332  


Q ss_pred             eeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEE
Q psy17342        157 HRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFV  236 (401)
Q Consensus       157 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  236 (401)
                         .-++.+|...|+++.|..+.-...+++++.|..|.+-..++.+.......- .  .......++.++.. |..++++
T Consensus       540 ---~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~-t--~t~~ktTlYDm~Vd-p~~k~v~  612 (1080)
T KOG1408|consen  540 ---VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRH-T--QTLSKTTLYDMAVD-PTSKLVV  612 (1080)
T ss_pred             ---hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccc-c--cccccceEEEeeeC-CCcceEE
Confidence               134689999999999965444478999999987765443321111111111 1  11234578899999 8899999


Q ss_pred             EEcCCceEEEEeCCCCCCCceeeecC---CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCC
Q psy17342        237 VGCEDGNVYSACRHGNKAGNVECYEG---HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRD  313 (401)
Q Consensus       237 ~~~~d~~i~~~~~~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  313 (401)
                      +++.|..|++|++.+.  +..+.|++   |.+....+...|.      +.++++...|+++.++|+.+++++.++.+|..
T Consensus       613 t~cQDrnirif~i~sg--Kq~k~FKgs~~~eG~lIKv~lDPS------giY~atScsdktl~~~Df~sgEcvA~m~GHsE  684 (1080)
T KOG1408|consen  613 TVCQDRNIRIFDIESG--KQVKSFKGSRDHEGDLIKVILDPS------GIYLATSCSDKTLCFVDFVSGECVAQMTGHSE  684 (1080)
T ss_pred             EEecccceEEEecccc--ceeeeecccccCCCceEEEEECCC------ccEEEEeecCCceEEEEeccchhhhhhcCcch
Confidence            9999999999999854  45667764   6677788899998      89999999999999999999999999999999


Q ss_pred             ceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        314 YVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       314 ~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      .|+.+.|.+|.+ .|++.+.||.|.||.+..
T Consensus       685 ~VTG~kF~nDCk-HlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  685 AVTGVKFLNDCK-HLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             heeeeeecccch-hheeecCCceEEEEECch
Confidence            999999999998 578888899999998753

>KOG2106|consensus

Probab=99.96  E-value=2.1e-25  Score=186.63  Aligned_cols=286  Identities=21%  Similarity=0.292  Sum_probs=218.1

Q ss_pred             cceEEEEecCC--CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342         66 RNVTYMDWSTQ--HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQI  143 (401)
Q Consensus        66 ~~v~~~~~~~~--~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v  143 (401)
                      ..|.|++|++-  |.+|++...        +.+..+.+||+..+........ .+..|....|+|.+++++++.+ .|.+
T Consensus       155 ~GV~~vaFsk~~~G~~l~~vD~--------s~~h~lSVWdWqk~~~~~~vk~-sne~v~~a~FHPtd~nliit~G-k~H~  224 (626)
T KOG2106|consen  155 RGVTCVAFSKINGGSLLCAVDD--------SNPHMLSVWDWQKKAKLGPVKT-SNEVVFLATFHPTDPNLIITCG-KGHL  224 (626)
T ss_pred             ccceeeeecccCCCceEEEecC--------CCccccchhhchhhhccCccee-ccceEEEEEeccCCCcEEEEeC-CceE
Confidence            77999999983  445555553        3578899999987655544432 3678899999999999999886 6789


Q ss_pred             EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceE
Q psy17342        144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL  223 (401)
Q Consensus       144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (401)
                      ..|+.+.+.....+..  .-+.....|.|++|  .+++ -+++|..+|.|.+|+.....   .....     ..|...|.
T Consensus       225 ~Fw~~~~~~l~k~~~~--fek~ekk~Vl~v~F--~eng-dviTgDS~G~i~Iw~~~~~~---~~k~~-----~aH~ggv~  291 (626)
T KOG2106|consen  225 YFWTLRGGSLVKRQGI--FEKREKKFVLCVTF--LENG-DVITGDSGGNILIWSKGTNR---ISKQV-----HAHDGGVF  291 (626)
T ss_pred             EEEEccCCceEEEeec--cccccceEEEEEEE--cCCC-CEEeecCCceEEEEeCCCce---EEeEe-----eecCCceE
Confidence            9999988765433221  11233478999999  6666 48899999999999986421   11111     14899999


Q ss_pred             EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCc--------------------------------------eeeecCCCC
Q psy17342        224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGN--------------------------------------VECYEGHEG  265 (401)
Q Consensus       224 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~--------------------------------------~~~~~~~~~  265 (401)
                      +++.. .++.++ +|+.|..|..||-.-++.+.                                      ....++|..
T Consensus       292 ~L~~l-r~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~d  369 (626)
T KOG2106|consen  292 SLCML-RDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGD  369 (626)
T ss_pred             EEEEe-cCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEeccc
Confidence            99998 666554 59999999999843222110                                      012246777


Q ss_pred             ceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342        266 PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD  345 (401)
Q Consensus       266 ~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~  345 (401)
                      ....++.+|+      .+++++++.|+.+++|+  ..+++.+... ..++.++.|+|.|  .+|.|...|...+.|.++.
T Consensus       370 elwgla~hps------~~q~~T~gqdk~v~lW~--~~k~~wt~~~-~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~  438 (626)
T KOG2106|consen  370 ELWGLATHPS------KNQLLTCGQDKHVRLWN--DHKLEWTKII-EDPAECADFHPSG--VVAVGTATGRWFVLDTETQ  438 (626)
T ss_pred             ceeeEEcCCC------hhheeeccCcceEEEcc--CCceeEEEEe-cCceeEeeccCcc--eEEEeeccceEEEEecccc
Confidence            8889999998      69999999999999999  5667666655 6788999999999  6899999999999999985


Q ss_pred             CCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        346 TEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       346 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      ..+.   .... ..+++.++|+|+|.+||+|+.|+.|+||.+..++
T Consensus       439 ~lv~---~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g  480 (626)
T KOG2106|consen  439 DLVT---IHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG  480 (626)
T ss_pred             eeEE---EEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC
Confidence            4332   2233 7899999999999999999999999999998876

>KOG0646|consensus

Probab=99.96  E-value=2.2e-27  Score=196.43  Aligned_cols=306  Identities=14%  Similarity=0.141  Sum_probs=222.9

Q ss_pred             ccccccc-cccccccccCCCCCCCCccccccccCC-----------CCCCCCCceeeeeeeccccc----cccceEEEEe
Q psy17342         10 QISGTLH-GLQADWNEEGDPGLPQLPQDLQFDMTG-----------DEKSSTKLSFCRQFFDEKWS----KNRNVTYMDW   73 (401)
Q Consensus        10 ~~~g~~~-g~~~vw~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~   73 (401)
                      +.+++.| .+..+||+..++.+.+....+.+...+           .....+.+++|.........    -.++|.|++-
T Consensus        10 ~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s   89 (476)
T KOG0646|consen   10 CSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALAS   89 (476)
T ss_pred             EeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeec
Confidence            3344554 468999999888664443331111110           02233455555543332222    3578999999


Q ss_pred             cCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCC-
Q psy17342         74 STQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQK-  152 (401)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~-  152 (401)
                      +|+|.+|++++          ..+.|++|.+.+|..+..+ ..|-..|+|+.|+.|+ .++++|+.||.|.+|.+..-- 
T Consensus        90 ~n~G~~l~ag~----------i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~  157 (476)
T KOG0646|consen   90 SNLGYFLLAGT----------ISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVS  157 (476)
T ss_pred             CCCceEEEeec----------ccCcEEEEEeccccHHHHH-HhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecc
Confidence            99999999887          6999999999999888766 5578999999999987 799999999999999874311 


Q ss_pred             --CCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccC
Q psy17342        153 --KTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQN  230 (401)
Q Consensus       153 --~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  230 (401)
                        ..........+..|+-+|+++...+.+...+++++|.|.++++||+..+ .....+.        ....+.+++.+ |
T Consensus       158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlti~--------fp~si~av~lD-p  227 (476)
T KOG0646|consen  158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLTIT--------FPSSIKAVALD-P  227 (476)
T ss_pred             cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eeeEEEe--------cCCcceeEEEc-c
Confidence              1111111234689999999999854555679999999999999999863 2333322        34579999999 7


Q ss_pred             CCCeEEEEcCCceEEEEeCCCCC--------------CCceeeecCCCC--ceeeeecCccCCCCCCCcEEEEEeCCCeE
Q psy17342        231 DVNNFVVGCEDGNVYSACRHGNK--------------AGNVECYEGHEG--PVVGLSSHRAQGHIDFSHLYLTSSYDWSV  294 (401)
Q Consensus       231 ~~~~l~~~~~d~~i~~~~~~~~~--------------~~~~~~~~~~~~--~v~~i~~~~~~~~~~~~~~l~s~~~d~~i  294 (401)
                      .+..+++|+.+|.|.+.++....              ...+..+.||.+  +|+|++++-+      +.+|++|+.||+|
T Consensus       228 ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D------gtlLlSGd~dg~V  301 (476)
T KOG0646|consen  228 AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD------GTLLLSGDEDGKV  301 (476)
T ss_pred             cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC------ccEEEeeCCCCCE
Confidence            89999999999999987765432              123456678888  9999999998      8999999999999


Q ss_pred             EEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCC
Q psy17342        295 KLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       295 ~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~  343 (401)
                      +|||+.+.++++++....++|+-+.+.|-.+..+..-...-.+-.|++.
T Consensus       302 cvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk  350 (476)
T KOG0646|consen  302 CVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK  350 (476)
T ss_pred             EEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhh
Confidence            9999999999999886688999999977654334433333445555544

>KOG0302|consensus

Probab=99.95  E-value=1.6e-26  Score=186.44  Aligned_cols=258  Identities=14%  Similarity=0.261  Sum_probs=197.2

Q ss_pred             ecCCCeeEEEEeCCC-CceEEEEecCCeEEEEECCCCCC----------CceeeccccccCCCCcEEEEEEeecCC-ceE
Q psy17342        116 FCQSPVLSCCFAKFN-PYLILGGTYSGQIVLWDTRVQKK----------TPVHRTPLSVMAHTHPVFCMSVIGTQN-AHN  183 (401)
Q Consensus       116 ~~~~~v~~~~~~~~~-~~~l~~g~~dg~v~iw~~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~  183 (401)
                      .|.+.++.+.-++.+ ..+.++-+..|.|.||++...-.          ....+...++.+|...-+.++|  +|- ...
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdW--Sp~~~g~  226 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDW--SPIKTGR  226 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeec--ccccccc
Confidence            456777777777764 34667778899999999864211          1122233567899999999999  552 335


Q ss_pred             EEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCC
Q psy17342        184 LISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGH  263 (401)
Q Consensus       184 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~  263 (401)
                      |++|..-+.|++|...++.-     ......+.+|...|-.++|+|.....|++|+-||+|++||++....+.....+.|
T Consensus       227 LlsGDc~~~I~lw~~~~g~W-----~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh  301 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSW-----KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAH  301 (440)
T ss_pred             cccCccccceEeeeeccCce-----eecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeecc
Confidence            88888888999999876221     1111225669999999999988889999999999999999998755555556899


Q ss_pred             CCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC---CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEE
Q psy17342        264 EGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE---NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLW  340 (401)
Q Consensus       264 ~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iw  340 (401)
                      .+.|+-|+|+..      ..+||+|+.||+++|||++.   ++++.+|+.|..+|++|.|+|.....|++++.|.+|.||
T Consensus       302 ~sDVNVISWnr~------~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiW  375 (440)
T KOG0302|consen  302 NSDVNVISWNRR------EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIW  375 (440)
T ss_pred             CCceeeEEccCC------cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence            999999999988      46999999999999999986   678999999999999999999887899999999999999


Q ss_pred             eCCCCCC---------------CcceEEeecCCCCeEEEEecCC-CcEEEEEecCCcEEEEEe
Q psy17342        341 NLNLDTE---------------VPATSAIVEGAPALSRVTWTPN-GTQLCVGDEKGAITMFDV  387 (401)
Q Consensus       341 d~~~~~~---------------~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~v~iw~~  387 (401)
                      |+.-...               .+.+-+...+...+..+.|++. -.+|++.+.|| +.||..
T Consensus       376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfkt  437 (440)
T KOG0302|consen  376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFKT  437 (440)
T ss_pred             EeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEEe
Confidence            9864322               1112222234567888999987 35677777888 667654

>KOG1539|consensus

Probab=99.95  E-value=1.7e-25  Score=197.72  Aligned_cols=327  Identities=14%  Similarity=0.201  Sum_probs=233.6

Q ss_pred             hhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCC--CCeEEE
Q psy17342          6 AGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQH--PELLLA   83 (401)
Q Consensus         6 ~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~   83 (401)
                      .|++++++..++.+.||+...... + .  ..            ++.+    ..  ..+ +.|+++ ++|..  +.++.|
T Consensus       123 fGe~lia~d~~~~l~vw~~s~~~~-e-~--~l------------~~~~----~~--~~~-~~Ital-~HP~TYLNKIvvG  178 (910)
T KOG1539|consen  123 FGEHLIAVDISNILFVWKTSSIQE-E-L--YL------------QSTF----LK--VEG-DFITAL-LHPSTYLNKIVVG  178 (910)
T ss_pred             ecceEEEEEccCcEEEEEeccccc-c-c--cc------------ccee----ee--ccC-CceeeE-ecchhheeeEEEe
Confidence            578889999999999998765420 0 0  00            0111    11  011 226666 45543  347777


Q ss_pred             EeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccc
Q psy17342         84 SYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSV  163 (401)
Q Consensus        84 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~  163 (401)
                      +          .+|.++||++++++.+.++.. +...|+++.=+|- -..++.|..+|+|.+++++.++..      +++
T Consensus       179 s----------~~G~lql~Nvrt~K~v~~f~~-~~s~IT~ieqsPa-LDVVaiG~~~G~ViifNlK~dkil------~sF  240 (910)
T KOG1539|consen  179 S----------SQGRLQLWNVRTGKVVYTFQE-FFSRITAIEQSPA-LDVVAIGLENGTVIIFNLKFDKIL------MSF  240 (910)
T ss_pred             e----------cCCcEEEEEeccCcEEEEecc-cccceeEeccCCc-ceEEEEeccCceEEEEEcccCcEE------EEE
Confidence            7          799999999999988876643 4689999999994 479999999999999999988765      333


Q ss_pred             cCCCCcEEEEEEeecCCce-EEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCc
Q psy17342        164 MAHTHPVFCMSVIGTQNAH-NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG  242 (401)
Q Consensus       164 ~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  242 (401)
                      +...+.|++++|  ..||. .+++++..|.+.+||++... .....      ...|...|....|. +....+++++.|.
T Consensus       241 k~d~g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~kk-l~~v~------~nah~~sv~~~~fl-~~epVl~ta~~Dn  310 (910)
T KOG1539|consen  241 KQDWGRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKKK-LINVT------RNAHYGSVTGATFL-PGEPVLVTAGADN  310 (910)
T ss_pred             EccccceeEEEe--ccCCCeeEEeccCCceEEEEEcCCCe-eeeee------eccccCCcccceec-CCCceEeeccCCC
Confidence            334699999999  77776 55566667999999998522 11111      22366777777887 6777788888887


Q ss_pred             eEEEEeCCCCCC--CceeeecC----------------------------------------------------------
Q psy17342        243 NVYSACRHGNKA--GNVECYEG----------------------------------------------------------  262 (401)
Q Consensus       243 ~i~~~~~~~~~~--~~~~~~~~----------------------------------------------------------  262 (401)
                      .+++|-.+...+  +.++.-.|                                                          
T Consensus       311 Slk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~  390 (910)
T KOG1539|consen  311 SLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFST  390 (910)
T ss_pred             ceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccch
Confidence            776663331110  00000000                                                          


Q ss_pred             --------------------------------------------------------CCCceeeeecCccCCCCCCCcEEE
Q psy17342        263 --------------------------------------------------------HEGPVVGLSSHRAQGHIDFSHLYL  286 (401)
Q Consensus       263 --------------------------------------------------------~~~~v~~i~~~~~~~~~~~~~~l~  286 (401)
                                                                              ....+++++.++.      |++.+
T Consensus       391 ~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C------GNF~~  464 (910)
T KOG1539|consen  391 EKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC------GNFVF  464 (910)
T ss_pred             hhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEecc------CceEE
Confidence                                                                    1123556666665      78888


Q ss_pred             EEeCCCeEEEEEeeCCCceEEE---eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcc-------------
Q psy17342        287 TSSYDWSVKLWNIKENKPVHSF---NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA-------------  350 (401)
Q Consensus       287 s~~~d~~i~iwd~~~~~~~~~~---~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-------------  350 (401)
                      .|+..|.|-+|++.+|-...++   ..|.++|++++....++ ++++++.+|.+++||.........             
T Consensus       465 IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~h  543 (910)
T KOG1539|consen  465 IGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYH  543 (910)
T ss_pred             EeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEecCCcceeeeeccCCCcceeeee
Confidence            8888999999999988888888   47999999999999887 899999999999999986542211             


Q ss_pred             -------------------------eEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        351 -------------------------TSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       351 -------------------------~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                                               .+...+|...|++++|||||++|++++.|++|++||+.++.
T Consensus       544 r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~  609 (910)
T KOG1539|consen  544 RVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT  609 (910)
T ss_pred             ehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence                                     11123478899999999999999999999999999999984

>KOG0270|consensus

Probab=99.95  E-value=8e-27  Score=192.02  Aligned_cols=251  Identities=20%  Similarity=0.238  Sum_probs=199.0

Q ss_pred             ceEEEEecCC-------CCCeEEEEeccCCCCCCCCCcEEEEEeCcC-CCCCceEEE-------------------ecCC
Q psy17342         67 NVTYMDWSTQ-------HPELLLASYHRNKEAPNEPDGVCLIWNTKF-KKTTPEFEF-------------------FCQS  119 (401)
Q Consensus        67 ~v~~~~~~~~-------~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~-~~~~~~~~~-------------------~~~~  119 (401)
                      .-.|++|...       |+++|.|+          .+..|.|||+.- ....|.+.+                   +|..
T Consensus       175 fPLC~ewld~~~~~~~~gNyvAiGt----------mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTd  244 (463)
T KOG0270|consen  175 FPLCIEWLDHGSKSGGAGNYVAIGT----------MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTD  244 (463)
T ss_pred             cchhhhhhhcCCCCCCCcceEEEec----------cCceeEEeccccccccccceeechhhhhhhhhhcccccccccchH
Confidence            3466776433       56788888          799999999863 222333332                   3677


Q ss_pred             CeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeecc
Q psy17342        120 PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLE  199 (401)
Q Consensus       120 ~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~  199 (401)
                      .|.+++|+..-.++||+|+.|.+|++||+.+++..      .++..|.+.|.++.|+ +.....|++|+.|+++.+.|.+
T Consensus       245 avl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~------~s~~~~~k~Vq~l~wh-~~~p~~LLsGs~D~~V~l~D~R  317 (463)
T KOG0270|consen  245 AVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK------SSITHHGKKVQTLEWH-PYEPSVLLSGSYDGTVALKDCR  317 (463)
T ss_pred             HHHHHHhccccceeEEecCCCceEEEEEcCCCCcc------eehhhcCCceeEEEec-CCCceEEEeccccceEEeeecc
Confidence            88899999888889999999999999999999875      3345799999999995 4567799999999999999998


Q ss_pred             CCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCC
Q psy17342        200 MLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHI  279 (401)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  279 (401)
                      .........+        ..+.|-.++|.|.....+++++.||.++-+|++... +++.+++.|.++|.++++++..   
T Consensus       318 ~~~~s~~~wk--------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-~~vwt~~AHd~~ISgl~~n~~~---  385 (463)
T KOG0270|consen  318 DPSNSGKEWK--------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-KPVWTLKAHDDEISGLSVNIQT---  385 (463)
T ss_pred             CccccCceEE--------eccceEEEEecCCCceeEEEecCCceEEeeecCCCC-CceeEEEeccCCcceEEecCCC---
Confidence            6433333333        345899999998888999999999999999999654 6899999999999999999886   


Q ss_pred             CCCcEEEEEeCCCeEEEEEeeCCCc--eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCC
Q psy17342        280 DFSHLYLTSSYDWSVKLWNIKENKP--VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV  348 (401)
Q Consensus       280 ~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  348 (401)
                        ..++++++.|+.|++|++....+  +..-.-.-+...|.++.|+-..+++.|+..+.++|||+.+...+
T Consensus       386 --p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  386 --PGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             --CcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence              78999999999999999975443  22211112347788899998888999999999999999876543

>KOG0301|consensus

Probab=99.95  E-value=3.5e-26  Score=198.14  Aligned_cols=261  Identities=16%  Similarity=0.209  Sum_probs=207.5

Q ss_pred             cccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEE-EEecC-CCCCeEEEEec
Q psy17342          9 SQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTY-MDWST-QHPELLLASYH   86 (401)
Q Consensus         9 ~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l~~~~~~   86 (401)
                      .+++|+.||++++|+-..+.-+...                       .+   .+|.+-|.+ ++|-+ ++-.|++|+  
T Consensus        27 ~i~s~sRd~t~~vw~~~~~~~l~~~-----------------------~~---~~~~g~i~~~i~y~e~~~~~l~~g~--   78 (745)
T KOG0301|consen   27 CIISGSRDGTVKVWAKKGKQYLETH-----------------------AF---EGPKGFIANSICYAESDKGRLVVGG--   78 (745)
T ss_pred             EEeecCCCCceeeeeccCcccccce-----------------------ec---ccCcceeeccceeccccCcceEeec--
Confidence            4899999999999987666522110                       00   123355655 77775 344588888  


Q ss_pred             cCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCC
Q psy17342         87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH  166 (401)
Q Consensus        87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  166 (401)
                              .|..+.+|..........+ .+|...|.++....++  .+++||.|.++++|.......        .+.+|
T Consensus        79 --------~D~~i~v~~~~~~~P~~~L-kgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~l~~--------~l~gH  139 (745)
T KOG0301|consen   79 --------MDTTIIVFKLSQAEPLYTL-KGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGELVY--------SLQGH  139 (745)
T ss_pred             --------ccceEEEEecCCCCchhhh-hccccceeeeecCCcC--ceEecccccceEEecchhhhc--------ccCCc
Confidence                    8999999999876655433 4679999999977655  389999999999998876442        35899


Q ss_pred             CCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEE
Q psy17342        167 THPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYS  246 (401)
Q Consensus       167 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~  246 (401)
                      +..|+++..  -|++ .++|||.|.+|++|.-.+   ..++       +.+|...|+.+++.  +...|++++.||.|+.
T Consensus       140 ~asVWAv~~--l~e~-~~vTgsaDKtIklWk~~~---~l~t-------f~gHtD~VRgL~vl--~~~~flScsNDg~Ir~  204 (745)
T KOG0301|consen  140 TASVWAVAS--LPEN-TYVTGSADKTIKLWKGGT---LLKT-------FSGHTDCVRGLAVL--DDSHFLSCSNDGSIRL  204 (745)
T ss_pred             chheeeeee--cCCC-cEEeccCcceeeeccCCc---hhhh-------hccchhheeeeEEe--cCCCeEeecCCceEEE
Confidence            999999998  5666 899999999999998542   2222       45699999999998  4568899999999999


Q ss_pred             EeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCc
Q psy17342        247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPA  326 (401)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~  326 (401)
                      |++.+.   .+..+.+|+..|++++..++      ...++++++|++++||+..  .+.+.+......|+++.+-++|. 
T Consensus       205 w~~~ge---~l~~~~ghtn~vYsis~~~~------~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-  272 (745)
T KOG0301|consen  205 WDLDGE---VLLEMHGHTNFVYSISMALS------DGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-  272 (745)
T ss_pred             EeccCc---eeeeeeccceEEEEEEecCC------CCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-
Confidence            999543   68889999999999996666      5899999999999999976  77777776666899999999997 


Q ss_pred             EEEEEecCCEEEEEeCCC
Q psy17342        327 LFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       327 ~l~~~~~d~~i~iwd~~~  344 (401)
                       +++|+.||.||||....
T Consensus       273 -Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  273 -IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             -EEEeccCceEEEEEecc
Confidence             78888999999998763

>KOG1274|consensus

Probab=99.95  E-value=6.8e-26  Score=202.29  Aligned_cols=246  Identities=16%  Similarity=0.275  Sum_probs=199.7

Q ss_pred             EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEE
Q psy17342        115 FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLC  194 (401)
Q Consensus       115 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~  194 (401)
                      +.|....+.++|.|+| ..|++++.||.|++|+.......|     -.+..+...|.+++.    .+.+|++++.+++|.
T Consensus        10 yaht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e~P-----~ti~~~g~~v~~ia~----~s~~f~~~s~~~tv~   79 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEEEP-----ETIDISGELVSSIAC----YSNHFLTGSEQNTVL   79 (933)
T ss_pred             hhccCceEEEEEcCCC-CEEEEecCCCceEEeecCCcccCC-----chhhccCceeEEEee----cccceEEeeccceEE
Confidence            3567889999999988 588888899999999987764322     223348888988876    555999999999999


Q ss_pred             EeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCc
Q psy17342        195 SWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR  274 (401)
Q Consensus       195 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  274 (401)
                      +|.+..+........        ...++++++|+ .++++++.|+.|-.|++.+.....  ....+++|.++|.++.++|
T Consensus        80 ~y~fps~~~~~iL~R--------ftlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~D~s--~~~~lrgh~apVl~l~~~p  148 (933)
T KOG1274|consen   80 RYKFPSGEEDTILAR--------FTLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLDDSS--QEKVLRGHDAPVLQLSYDP  148 (933)
T ss_pred             EeeCCCCCccceeee--------eeccceEEEEe-cCCcEEEeecCceeEEEEeccccc--hheeecccCCceeeeeEcC
Confidence            999876332222222        34589999999 999999999999999999887443  5778999999999999999


Q ss_pred             cCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee--------cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342        275 AQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE--------FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT  346 (401)
Q Consensus       275 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~  346 (401)
                      .      +++||+.+.||.|++||+.++.+..++.+        ....+..++|+|++.. |+....|+.|++|+.....
T Consensus       149 ~------~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-la~~~~d~~Vkvy~r~~we  221 (933)
T KOG1274|consen  149 K------GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT-LAVPPVDNTVKVYSRKGWE  221 (933)
T ss_pred             C------CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe-EEeeccCCeEEEEccCCce
Confidence            9      79999999999999999999887777654        1345778999999874 5666679999999999887


Q ss_pred             CCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        347 EVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       347 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      ....++... +...+..++|+|+|+|||+++.||.|.|||+++
T Consensus       222 ~~f~Lr~~~-~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  222 LQFKLRDKL-SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             eheeecccc-cccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            665555322 234499999999999999999999999999985

>KOG0270|consensus

Probab=99.95  E-value=5.2e-26  Score=187.28  Aligned_cols=297  Identities=17%  Similarity=0.229  Sum_probs=213.2

Q ss_pred             EEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEec----CCCeeEEEEeCC------CCceEEEEe
Q psy17342         69 TYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC----QSPVLSCCFAKF------NPYLILGGT  138 (401)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~~------~~~~l~~g~  138 (401)
                      -.+..-|+...++++-...       ....+.+|=.+...  +.+-.+|    .....|++|...      .++++|.|+
T Consensus       129 de~~V~psDnlIl~ar~ed-------dvs~LEvYVyn~~e--~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGt  199 (463)
T KOG0270|consen  129 DEEQVKPSDNLILCARNED-------DVSYLEVYVYNEEE--ENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGT  199 (463)
T ss_pred             ccceeccCCcEEEEeeccC-------CceEEEEEEEcCCC--cceeEecceeccCcchhhhhhhcCCCCCCCcceEEEec
Confidence            3455667666666665311       23444444443211  2233343    455678888643      136999999


Q ss_pred             cCCeEEEEECCCCCCC-cee--------------eccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCC
Q psy17342        139 YSGQIVLWDTRVQKKT-PVH--------------RTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSS  203 (401)
Q Consensus       139 ~dg~v~iw~~~~~~~~-~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~  203 (401)
                      .+..|.|||+.-.... |..              +......+|+..|.+++|. ....+.|++||.|.+|++||+.+ ++
T Consensus       200 mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n-~~~~nVLaSgsaD~TV~lWD~~~-g~  277 (463)
T KOG0270|consen  200 MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN-RNFRNVLASGSADKTVKLWDVDT-GK  277 (463)
T ss_pred             cCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc-cccceeEEecCCCceEEEEEcCC-CC
Confidence            9999999998632211 110              0112235799999999984 23456899999999999999987 44


Q ss_pred             CccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCc
Q psy17342        204 PQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSH  283 (401)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~  283 (401)
                      +...+.       .|...|.++.|+|.....|++|+.|+++.+.|.+.... .-..++ -.+.|-.++|.|..     ..
T Consensus       278 p~~s~~-------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-s~~~wk-~~g~VEkv~w~~~s-----e~  343 (463)
T KOG0270|consen  278 PKSSIT-------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-SGKEWK-FDGEVEKVAWDPHS-----EN  343 (463)
T ss_pred             cceehh-------hcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-cCceEE-eccceEEEEecCCC-----ce
Confidence            554433       37889999999988899999999999999999984211 112222 45788999999986     67


Q ss_pred             EEEEEeCCCeEEEEEeeC-CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeE
Q psy17342        284 LYLTSSYDWSVKLWNIKE-NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALS  362 (401)
Q Consensus       284 ~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  362 (401)
                      .++++..||+|+-+|+|+ ++++.+++.|.++|.++++++..+.++++++.|+.+++|++........... .-.-+...
T Consensus       344 ~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~-~~~~~rl~  422 (463)
T KOG0270|consen  344 SFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH-SFKLGRLH  422 (463)
T ss_pred             eEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc-ccccccee
Confidence            888889999999999998 4999999999999999999999988999999999999999976543222111 01122366


Q ss_pred             EEEecCCC-cEEEEEecCCcEEEEEeccCc
Q psy17342        363 RVTWTPNG-TQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       363 ~~~~s~~g-~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      |+++.|+- -+|+.|+..+.++|||+.+..
T Consensus       423 c~~~~~~~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  423 CFALDPDVAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             ecccCCCcceEEEecCccceEEEeecccCh
Confidence            77778874 467888888899999998863

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=6.3e-25  Score=189.58  Aligned_cols=270  Identities=12%  Similarity=0.046  Sum_probs=188.7

Q ss_pred             CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEE
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMS  174 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  174 (401)
                      .|+.|++||+.+++....+  .....+.+++|+|++..++++++.++.|++||..+++....      +..+. .+..++
T Consensus         9 ~d~~v~~~d~~t~~~~~~~--~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~------~~~~~-~~~~~~   79 (300)
T TIGR03866         9 KDNTISVIDTATLEVTRTF--PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT------LPSGP-DPELFA   79 (300)
T ss_pred             CCCEEEEEECCCCceEEEE--ECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe------ccCCC-CccEEE
Confidence            7999999999877655444  33345778999998855567777889999999987654321      12222 345677


Q ss_pred             EeecCCceEEEEE-eCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCc-eEEEEeCCCC
Q psy17342        175 VIGTQNAHNLISI-SNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG-NVYSACRHGN  252 (401)
Q Consensus       175 ~~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~~~~~~~~  252 (401)
                      |  +++++.++++ +.++.+++||++... ...  .+.      ....+.+++|+ +++..++++..++ .+.+||....
T Consensus        80 ~--~~~g~~l~~~~~~~~~l~~~d~~~~~-~~~--~~~------~~~~~~~~~~~-~dg~~l~~~~~~~~~~~~~d~~~~  147 (300)
T TIGR03866        80 L--HPNGKILYIANEDDNLVTVIDIETRK-VLA--EIP------VGVEPEGMAVS-PDGKIVVNTSETTNMAHFIDTKTY  147 (300)
T ss_pred             E--CCCCCEEEEEcCCCCeEEEEECCCCe-EEe--Eee------CCCCcceEEEC-CCCCEEEEEecCCCeEEEEeCCCC
Confidence            7  8888877554 568999999997521 111  111      12346789999 7999999888765 4667787643


Q ss_pred             CCCceeeecCCCCceeeeecCccCCCCCCCcEE-EEEeCCCeEEEEEeeCCCceEEEeecCC-------ceEEEEECCCC
Q psy17342        253 KAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLY-LTSSYDWSVKLWNIKENKPVHSFNEFRD-------YVMDVQWSPIN  324 (401)
Q Consensus       253 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~-------~v~~v~~~~~~  324 (401)
                        ....... ......+++|+|+      +.++ +++..++.|++||+++++.+..+..+..       ....++|+|++
T Consensus       148 --~~~~~~~-~~~~~~~~~~s~d------g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg  218 (300)
T TIGR03866       148 --EIVDNVL-VDQRPRFAEFTAD------GKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDG  218 (300)
T ss_pred             --eEEEEEE-cCCCccEEEECCC------CCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCC
Confidence              2333322 2234567899998      5666 4555699999999999887776653211       23468899999


Q ss_pred             CcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEE-ecCCcEEEEEeccCccceeeeeec
Q psy17342        325 PALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVG-DEKGAITMFDVGEVGIACLKFITS  400 (401)
Q Consensus       325 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~dg~v~iw~~~~~~~~~l~~~~~  400 (401)
                      +.++++.+.++.+.+||+++++.....    .+...+.+++|+|+|++|+++ ..+|.|.+||+.++  ++++.++.
T Consensus       219 ~~~~~~~~~~~~i~v~d~~~~~~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~--~~~~~~~~  289 (300)
T TIGR03866       219 KTAFVALGPANRVAVVDAKTYEVLDYL----LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL--KVIKSIKV  289 (300)
T ss_pred             CEEEEEcCCCCeEEEEECCCCcEEEEE----EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC--cEEEEEEc
Confidence            855565666778999999876543322    234568899999999999886 46899999999998  55555543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0650|consensus

Probab=99.95  E-value=3.4e-26  Score=195.02  Aligned_cols=290  Identities=16%  Similarity=0.188  Sum_probs=219.5

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      +|.+.|.++...|.|.+|++|+          .||+|+||.+.++.++....+  .+.|.|++|+|.+..-+++......
T Consensus       398 GHtg~Vr~iSvdp~G~wlasGs----------dDGtvriWEi~TgRcvr~~~~--d~~I~~vaw~P~~~~~vLAvA~~~~  465 (733)
T KOG0650|consen  398 GHTGLVRSISVDPSGEWLASGS----------DDGTVRIWEIATGRCVRTVQF--DSEIRSVAWNPLSDLCVLAVAVGEC  465 (733)
T ss_pred             ccCCeEEEEEecCCcceeeecC----------CCCcEEEEEeecceEEEEEee--cceeEEEEecCCCCceeEEEEecCc
Confidence            6889999999999999999999          899999999999999987766  4799999999976553333334444


Q ss_pred             EEEEECCCCCC-----------------Cc--------------eeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC
Q psy17342        143 IVLWDTRVQKK-----------------TP--------------VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG  191 (401)
Q Consensus       143 v~iw~~~~~~~-----------------~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg  191 (401)
                      +.|-+..-+..                 .+              ..........|..+|..+.|  +..|++|++...++
T Consensus       466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtW--HrkGDYlatV~~~~  543 (733)
T KOG0650|consen  466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTW--HRKGDYLATVMPDS  543 (733)
T ss_pred             eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeee--ecCCceEEEeccCC
Confidence            55554332210                 00              00000112457889999999  89999999987654


Q ss_pred             ---cEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCcee
Q psy17342        192 ---RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVV  268 (401)
Q Consensus       192 ---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~  268 (401)
                         .|.|.++..... +..       +.-..+.|.++.|+ |...+|++++. ..|++||+..  ...++.+......|.
T Consensus       544 ~~~~VliHQLSK~~s-Q~P-------F~kskG~vq~v~FH-Ps~p~lfVaTq-~~vRiYdL~k--qelvKkL~tg~kwiS  611 (733)
T KOG0650|consen  544 GNKSVLIHQLSKRKS-QSP-------FRKSKGLVQRVKFH-PSKPYLFVATQ-RSVRIYDLSK--QELVKKLLTGSKWIS  611 (733)
T ss_pred             CcceEEEEecccccc-cCc-------hhhcCCceeEEEec-CCCceEEEEec-cceEEEehhH--HHHHHHHhcCCeeee
Confidence               588888875221 111       12245679999999 67777777765 6899999973  345666666778899


Q ss_pred             eeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC-CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeC-----
Q psy17342        269 GLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE-NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNL-----  342 (401)
Q Consensus       269 ~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~-----  342 (401)
                      +++.+|.      |.-|+.|+.|+.+..+|+.- .++.+++..|...+++|+|++.-+ +|++|+.||++.|+.-     
T Consensus       612 ~msihp~------GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~D  684 (733)
T KOG0650|consen  612 SMSIHPN------GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYND  684 (733)
T ss_pred             eeeecCC------CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehh
Confidence            9999998      78899999999999999964 578889999999999999999987 9999999999999853     


Q ss_pred             -CCCCCCcceEEeecCC----CCeEEEEecCCCcEEEEEecCCcEEEE
Q psy17342        343 -NLDTEVPATSAIVEGA----PALSRVTWTPNGTQLCVGDEKGAITMF  385 (401)
Q Consensus       343 -~~~~~~~~~~~~~~~~----~~v~~~~~s~~g~~l~~~~~dg~v~iw  385 (401)
                       ..+..+..++...+|.    -.|..+.|+|...+|++++.||+|++|
T Consensus       685 l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  685 LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             hhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence             2222222233333443    348889999999999999999999998

>KOG2048|consensus

Probab=99.95  E-value=4.6e-25  Score=190.79  Aligned_cols=240  Identities=15%  Similarity=0.166  Sum_probs=176.6

Q ss_pred             hhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEe
Q psy17342          6 AGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASY   85 (401)
Q Consensus         6 ~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   85 (401)
                      ....+|.|..+|+|.+|++...--.                       ...++.   ..++.|.+++|++.+ .|++.+ 
T Consensus        36 kS~~lAvsRt~g~IEiwN~~~~w~~-----------------------~~vi~g---~~drsIE~L~W~e~~-RLFS~g-   87 (691)
T KOG2048|consen   36 KSNQLAVSRTDGNIEIWNLSNNWFL-----------------------EPVIHG---PEDRSIESLAWAEGG-RLFSSG-   87 (691)
T ss_pred             cCCceeeeccCCcEEEEccCCCcee-----------------------eEEEec---CCCCceeeEEEccCC-eEEeec-
Confidence            3456788899999999998764310                       111111   244789999999655 677777 


Q ss_pred             ccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccC
Q psy17342         86 HRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMA  165 (401)
Q Consensus        86 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~  165 (401)
                               -+|.|.-||+.+.+....+.. ..+.|.+++.+|.+ ..++.|+.||.+..++...+...  ..  ..+..
T Consensus        88 ---------~sg~i~EwDl~~lk~~~~~d~-~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~--~~--r~l~r  152 (691)
T KOG2048|consen   88 ---------LSGSITEWDLHTLKQKYNIDS-NGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKIT--YK--RSLMR  152 (691)
T ss_pred             ---------CCceEEEEecccCceeEEecC-CCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEE--EE--eeccc
Confidence                     599999999997765543322 36789999999966 78888999997777776665432  21  22455


Q ss_pred             CCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccccccc-CCccceEEEEeccCCCCeEEEEcCCceE
Q psy17342        166 HTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQ-TKNLAVLSLAFPQNDVNNFVVGCEDGNV  244 (401)
Q Consensus       166 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i  244 (401)
                      .++.|.+++|  ++++..+++|+.||.|++||........ ...+...... ....-|+++.|.  ....|++|...|.|
T Consensus       153 q~sRvLslsw--~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~-~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V  227 (691)
T KOG2048|consen  153 QKSRVLSLSW--NPTGTKIAGGSIDGVIRIWDVKSGQTLH-IITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTV  227 (691)
T ss_pred             ccceEEEEEe--cCCccEEEecccCceEEEEEcCCCceEE-EeeecccccccCCceEEEEEEEe--ecCcEEEecCCceE
Confidence            6789999999  9999999999999999999998643322 1111111011 244567888887  56789999999999


Q ss_pred             EEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342        245 YSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE  301 (401)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  301 (401)
                      .+||....  .++..+..|.+.|.+++..++      ++.+++++.|+.|.-|...+
T Consensus       228 ~FWd~~~g--TLiqS~~~h~adVl~Lav~~~------~d~vfsaGvd~~ii~~~~~~  276 (691)
T KOG2048|consen  228 TFWDSIFG--TLIQSHSCHDADVLALAVADN------EDRVFSAGVDPKIIQYSLTT  276 (691)
T ss_pred             EEEcccCc--chhhhhhhhhcceeEEEEcCC------CCeEEEccCCCceEEEEecC
Confidence            99998744  467888899999999999988      68888888888887776543

>KOG0302|consensus

Probab=99.95  E-value=7.5e-26  Score=182.63  Aligned_cols=255  Identities=16%  Similarity=0.265  Sum_probs=194.4

Q ss_pred             cccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcC--------------CCCCceEEEe-cCCCeeEE
Q psy17342         60 EKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKF--------------KKTTPEFEFF-CQSPVLSC  124 (401)
Q Consensus        60 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~--------------~~~~~~~~~~-~~~~v~~~  124 (401)
                      ....|.+.++.+.-++-++..+++++        +..|.|+||++..              .+..+.+.+. |...=+.+
T Consensus       146 ~~i~h~g~~NRvr~~~~~~~~~~asw--------se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~L  217 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLGNEVLCASW--------SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGL  217 (440)
T ss_pred             cccccccccceeeecccCCcceeeee--------cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceee
Confidence            33457789999999998888888876        4699999999853              1222333333 66788999


Q ss_pred             EEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeeccCCCC
Q psy17342        125 CFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLEMLSS  203 (401)
Q Consensus       125 ~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~  203 (401)
                      +|||...-.|++|..-+.|++|...++.-..-   ...+.+|+..|-.++|  +|. ...|++||.||+|+|||++...+
T Consensus       218 dWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd---~~Pf~gH~~SVEDLqW--SptE~~vfaScS~DgsIrIWDiRs~~~  292 (440)
T KOG0302|consen  218 DWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD---QRPFTGHTKSVEDLQW--SPTEDGVFASCSCDGSIRIWDIRSGPK  292 (440)
T ss_pred             ecccccccccccCccccceEeeeeccCceeec---Cccccccccchhhhcc--CCccCceEEeeecCceEEEEEecCCCc
Confidence            99996555788998889999999988653211   1335679999999999  554 45899999999999999997432


Q ss_pred             CccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCC-CCceeeecCCCCceeeeecCccCCCCCCC
Q psy17342        204 PQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK-AGNVECYEGHEGPVVGLSSHRAQGHIDFS  282 (401)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~~~  282 (401)
                      .... .     ...|...|+.++|+ .+..+|++|+.||.+++||++..+ .+++..|+-|..+|++|.|+|..     .
T Consensus       293 ~~~~-~-----~kAh~sDVNVISWn-r~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e-----~  360 (440)
T KOG0302|consen  293 KAAV-S-----TKAHNSDVNVISWN-RREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE-----D  360 (440)
T ss_pred             ccee-E-----eeccCCceeeEEcc-CCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc-----C
Confidence            2222 1     13488899999999 677799999999999999998643 34778899999999999999986     6


Q ss_pred             cEEEEEeCCCeEEEEEeeCCCc----------------eEEEeec--CCceEEEEECCCCCcEEEEEecCCEEEEE
Q psy17342        283 HLYLTSSYDWSVKLWNIKENKP----------------VHSFNEF--RDYVMDVQWSPINPALFATVEVAGRVDLW  340 (401)
Q Consensus       283 ~~l~s~~~d~~i~iwd~~~~~~----------------~~~~~~~--~~~v~~v~~~~~~~~~l~~~~~d~~i~iw  340 (401)
                      ..|++++.|.+|.|||+.-..-                -+-+-.|  ...+..+.|+++-+.++++.+.|| +.||
T Consensus       361 s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  361 SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence            7888999999999999953211                1111223  446888999999888999998887 4444

>KOG4328|consensus

Probab=99.95  E-value=1.3e-25  Score=185.56  Aligned_cols=295  Identities=16%  Similarity=0.165  Sum_probs=215.5

Q ss_pred             cccceEEEEecCCCC-CeEEEEeccCCCCCCCCCcEEEEEeCcCC-CCCc-eEE-EecCCCeeEEEEeCCCCceEEEEec
Q psy17342         64 KNRNVTYMDWSTQHP-ELLLASYHRNKEAPNEPDGVCLIWNTKFK-KTTP-EFE-FFCQSPVLSCCFAKFNPYLILGGTY  139 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~d~~v~iwd~~~~-~~~~-~~~-~~~~~~v~~~~~~~~~~~~l~~g~~  139 (401)
                      +.+.|++++|+|..+ .+++++         +..|.|-+||+.+. +... .+. ..|..+|.++.|+|.+...+++.+.
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~G---------dK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy  255 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVG---------DKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY  255 (498)
T ss_pred             cccceEEEEecccCcceEEEEc---------cCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc
Confidence            568899999999876 555555         37899999999532 2222 222 2378899999999999889999999


Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                      ||+|++-|++......+    ++.........++.|  +.+...++.+..=|.+.+||++..+.......       .|.
T Consensus       256 DGtiR~~D~~~~i~e~v----~s~~~d~~~fs~~d~--~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~-------lh~  322 (498)
T KOG4328|consen  256 DGTIRLQDFEGNISEEV----LSLDTDNIWFSSLDF--SAESRSVLFGDNVGNFNVIDLRTDGSEYENLR-------LHK  322 (498)
T ss_pred             CceeeeeeecchhhHHH----hhcCccceeeeeccc--cCCCccEEEeecccceEEEEeecCCccchhhh-------hhh
Confidence            99999999988765422    223334445666777  77777888888888999999997554333332       266


Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCc--eeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEE
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGN--VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLW  297 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iw  297 (401)
                      ..|++++++|-...+|++++.|+..++||++.-..+.  ......|...|.+..|+|..      ..|+|.+.|..|+||
T Consensus       323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~------gtl~TT~~D~~IRv~  396 (498)
T KOG4328|consen  323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG------GTLLTTCQDNEIRVF  396 (498)
T ss_pred             cccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC------CceEeeccCCceEEe
Confidence            7999999998888999999999999999998644332  23444699999999999995      448999999999999


Q ss_pred             Eee----CCCceEEEee---cCC--ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeE-EEEec
Q psy17342        298 NIK----ENKPVHSFNE---FRD--YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALS-RVTWT  367 (401)
Q Consensus       298 d~~----~~~~~~~~~~---~~~--~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~s  367 (401)
                      |..    .-.+..++..   +..  ......|.|+.. ++++|..-..|-|+|-..++.+..+..  +....|. -..|+
T Consensus       397 dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q~v~el~~--P~~~tI~~vn~~H  473 (498)
T KOG4328|consen  397 DSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQMVCELHD--PESSTIPSVNEFH  473 (498)
T ss_pred             ecccccccCCccceeeccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCEEeeeccC--ccccccccceeec
Confidence            983    3445555442   111  234678999886 899999999999999887764444321  2122232 36899


Q ss_pred             CCCcEEEE-EecCCcEEEEEecc
Q psy17342        368 PNGTQLCV-GDEKGAITMFDVGE  389 (401)
Q Consensus       368 ~~g~~l~~-~~~dg~v~iw~~~~  389 (401)
                      |-+..+++ ++..|.|+||--+.
T Consensus       474 P~~~~~~aG~~s~Gki~vft~k~  496 (498)
T KOG4328|consen  474 PMRDTLAAGGNSSGKIYVFTNKK  496 (498)
T ss_pred             ccccceeccCCccceEEEEecCC
Confidence            99884544 55678888886543

>KOG2048|consensus

Probab=99.95  E-value=6.4e-25  Score=189.90  Aligned_cols=288  Identities=15%  Similarity=0.152  Sum_probs=222.9

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceE-EEecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEF-EFFCQSPVLSCCFAKFNPYLILGGTYSGQI  143 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v  143 (401)
                      ..+|.+++|+.+.+.||++-          .+|.|.||++..+-..... ..+....|.+++|++ + ..|++.+.+|.|
T Consensus        25 Ps~I~slA~s~kS~~lAvsR----------t~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~-~RLFS~g~sg~i   92 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSR----------TDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-G-GRLFSSGLSGSI   92 (691)
T ss_pred             ccceEEEEEeccCCceeeec----------cCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-C-CeEEeecCCceE
Confidence            37899999999998888887          7999999999875433332 333567999999996 4 356666689999


Q ss_pred             EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceE
Q psy17342        144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL  223 (401)
Q Consensus       144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (401)
                      .-||+.+.+..      .......+.|++++.  +|.+..++.|+.||.+..++... +.......+.     -.++.+.
T Consensus        93 ~EwDl~~lk~~------~~~d~~gg~IWsiai--~p~~~~l~IgcddGvl~~~s~~p-~~I~~~r~l~-----rq~sRvL  158 (691)
T KOG2048|consen   93 TEWDLHTLKQK------YNIDSNGGAIWSIAI--NPENTILAIGCDDGVLYDFSIGP-DKITYKRSLM-----RQKSRVL  158 (691)
T ss_pred             EEEecccCcee------EEecCCCcceeEEEe--CCccceEEeecCCceEEEEecCC-ceEEEEeecc-----cccceEE
Confidence            99999988754      334677889999999  89999999999999777777653 1122222222     2568999


Q ss_pred             EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec------CCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEE
Q psy17342        224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE------GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLW  297 (401)
Q Consensus       224 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~------~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iw  297 (401)
                      +++|+ +++..++.|+.||.|++||......-.+.+.+      +...-|.++.+-.+       ..|++|..-|+|.+|
T Consensus       159 slsw~-~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-------~tI~sgDS~G~V~FW  230 (691)
T KOG2048|consen  159 SLSWN-PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-------STIASGDSAGTVTFW  230 (691)
T ss_pred             EEEec-CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-------CcEEEecCCceEEEE
Confidence            99999 89999999999999999999754432211111      12334677777753       799999999999999


Q ss_pred             EeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcc-eEEeecCCCCeEEEEecCCCcEEEEE
Q psy17342        298 NIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA-TSAIVEGAPALSRVTWTPNGTQLCVG  376 (401)
Q Consensus       298 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~  376 (401)
                      |...+..++.+..|...|.+++..+++. .+.+++.|+.|..|...+.+.... ......|...+.+++..++  .|++|
T Consensus       231 d~~~gTLiqS~~~h~adVl~Lav~~~~d-~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sg  307 (691)
T KOG2048|consen  231 DSIFGTLIQSHSCHDADVLALAVADNED-RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISG  307 (691)
T ss_pred             cccCcchhhhhhhhhcceeEEEEcCCCC-eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEec
Confidence            9999999999999999999999999987 678888999999998877654221 1122356778999998877  89999


Q ss_pred             ecCCcEEEEEecc
Q psy17342        377 DEKGAITMFDVGE  389 (401)
Q Consensus       377 ~~dg~v~iw~~~~  389 (401)
                      +.|..+.+-....
T Consensus       308 G~d~~l~i~~s~~  320 (691)
T KOG2048|consen  308 GRDFTLAICSSRE  320 (691)
T ss_pred             ceeeEEEEccccc
Confidence            9999888776654

>KOG4378|consensus

Probab=99.95  E-value=1.5e-25  Score=187.11  Aligned_cols=270  Identities=15%  Similarity=0.236  Sum_probs=205.9

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCC-CCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK-KTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIV  144 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~  144 (401)
                      ..+.++.|+.... |++++.        +.|..+++|.-... ..++.........-.|++..... .++++|+..+.|+
T Consensus        35 pg~~s~~w~~~n~-lvvas~--------~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S-~y~~sgG~~~~Vk  104 (673)
T KOG4378|consen   35 PGDFSFNWQRRNF-LVVASM--------AGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS-LYEISGGQSGCVK  104 (673)
T ss_pred             Ccceeeeccccce-EEEeec--------CCceeEEEecccCCCCccceeeccccchHHHHhhhhcc-eeeeccCcCceee
Confidence            4499999998774 666653        46889999986532 11222222222344455544434 6899999999999


Q ss_pred             EEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342        145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS  224 (401)
Q Consensus       145 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (401)
                      |||++.....      ..+..|...|+++.|  +....+|++++..|.|.+..+.+..   ....+..    +....|.-
T Consensus       105 iwdl~~kl~h------r~lkdh~stvt~v~Y--N~~DeyiAsvs~gGdiiih~~~t~~---~tt~f~~----~sgqsvRl  169 (673)
T KOG4378|consen  105 IWDLRAKLIH------RFLKDHQSTVTYVDY--NNTDEYIASVSDGGDIIIHGTKTKQ---KTTTFTI----DSGQSVRL  169 (673)
T ss_pred             ehhhHHHHHh------hhccCCcceeEEEEe--cCCcceeEEeccCCcEEEEecccCc---cccceec----CCCCeEEE
Confidence            9999855433      235799999999999  7888999999999999999987632   2222221    23456779


Q ss_pred             EEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc
Q psy17342        225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP  304 (401)
Q Consensus       225 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  304 (401)
                      +.|+|....+|.+++.+|.|.+||..+... ...-...|..|...|+|+|.+     ..+|++.+.|.+|.+||++..+.
T Consensus       170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp-~~~~~~~HsAP~~gicfspsn-----e~l~vsVG~Dkki~~yD~~s~~s  243 (673)
T KOG4378|consen  170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSP-IFHASEAHSAPCRGICFSPSN-----EALLVSVGYDKKINIYDIRSQAS  243 (673)
T ss_pred             eecccccceeeEeeccCCeEEEEeccCCCc-ccchhhhccCCcCcceecCCc-----cceEEEecccceEEEeecccccc
Confidence            999977777888999999999999987653 344456899999999999997     78999999999999999998877


Q ss_pred             eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC
Q psy17342        305 VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG  370 (401)
Q Consensus       305 ~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  370 (401)
                      ...+.. ..+...++|+++|. +|++|...|.|..||++..+..  +.....|...|++++|-|.-
T Consensus       244 ~~~l~y-~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~k~P--v~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  244 TDRLTY-SHPLSTVAFSECGT-YLCAGNSKGELIAYDMRSTKAP--VAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cceeee-cCCcceeeecCCce-EEEeecCCceEEEEecccCCCC--ceEeeecccceeEEEeeecc
Confidence            777765 67899999999996 8999999999999999975532  22335778889999997664

>KOG1274|consensus

Probab=99.95  E-value=3.9e-25  Score=197.51  Aligned_cols=277  Identities=17%  Similarity=0.228  Sum_probs=218.0

Q ss_pred             cccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC
Q psy17342         62 WSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG  141 (401)
Q Consensus        62 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg  141 (401)
                      +.|...-+.++|.|+|.+|.+++          .||.|++|+.......|.....+...|.+++...   .+|++|+.++
T Consensus        10 yaht~G~t~i~~d~~gefi~tcg----------sdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s---~~f~~~s~~~   76 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCG----------SDGDIRKWKTNSDEEEPETIDISGELVSSIACYS---NHFLTGSEQN   76 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEec----------CCCceEEeecCCcccCCchhhccCceeEEEeecc---cceEEeeccc
Confidence            46778899999999999999999          8999999998766455555444677888887743   5888999999


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccc
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA  221 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  221 (401)
                      +|.+|.+.+++...+      +...+-++++++|  +.+|.+++.||.|-.|++.++.....   ...     +.+|..+
T Consensus        77 tv~~y~fps~~~~~i------L~Rftlp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~---~~~-----lrgh~ap  140 (933)
T KOG1274|consen   77 TVLRYKFPSGEEDTI------LARFTLPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQ---EKV-----LRGHDAP  140 (933)
T ss_pred             eEEEeeCCCCCccce------eeeeeccceEEEE--ecCCcEEEeecCceeEEEEeccccch---hee-----ecccCCc
Confidence            999999998776422      2455678999999  88999999999999999999876332   222     3459999


Q ss_pred             eEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC--------CCCceeeeecCccCCCCCCCcEEEEEeCCCe
Q psy17342        222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG--------HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWS  293 (401)
Q Consensus       222 v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~--------~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~  293 (401)
                      |.++.|+ |.+++||+.+-||.|++|++....  +..++.+        ....+..++|+|.      +..|+..+.|+.
T Consensus       141 Vl~l~~~-p~~~fLAvss~dG~v~iw~~~~~~--~~~tl~~v~k~n~~~~s~i~~~~aW~Pk------~g~la~~~~d~~  211 (933)
T KOG1274|consen  141 VLQLSYD-PKGNFLAVSSCDGKVQIWDLQDGI--LSKTLTGVDKDNEFILSRICTRLAWHPK------GGTLAVPPVDNT  211 (933)
T ss_pred             eeeeeEc-CCCCEEEEEecCceEEEEEcccch--hhhhcccCCccccccccceeeeeeecCC------CCeEEeeccCCe
Confidence            9999999 899999999999999999998543  2333321        1455778999999      566677777999


Q ss_pred             EEEEEeeCCCceEEEee--cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc
Q psy17342        294 VKLWNIKENKPVHSFNE--FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT  371 (401)
Q Consensus       294 i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  371 (401)
                      |++|+.........+..  +...+..++|+|.|. +||+++.||.|.|||..+...       ......|.+++|.|+.+
T Consensus       212 Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~t~~~-------~~~~~~Vc~~aw~p~~n  283 (933)
T KOG1274|consen  212 VKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK-YIAASTLDGQILVWNVDTHER-------HEFKRAVCCEAWKPNAN  283 (933)
T ss_pred             EEEEccCCceeheeecccccccceEEEEEcCCCc-EEeeeccCCcEEEEecccchh-------ccccceeEEEecCCCCC
Confidence            99999999888887764  444589999999997 899999999999999997221       12246799999999987


Q ss_pred             EEEEEecCCcEEE
Q psy17342        372 QLCVGDEKGAITM  384 (401)
Q Consensus       372 ~l~~~~~dg~v~i  384 (401)
                      -+-.-...|...+
T Consensus       284 ~it~~~~~g~~~~  296 (933)
T KOG1274|consen  284 AITLITALGTLGV  296 (933)
T ss_pred             eeEEEeecccccc
Confidence            6655444444333

>KOG0307|consensus

Probab=99.95  E-value=6e-27  Score=213.92  Aligned_cols=255  Identities=20%  Similarity=0.350  Sum_probs=204.0

Q ss_pred             cceEEEEecCCCCC---eEEEEeccCCCCCCCCCcEEEEEeCcC---CCCCc--eEEEecCCCeeEEEEeCCCCceEEEE
Q psy17342         66 RNVTYMDWSTQHPE---LLLASYHRNKEAPNEPDGVCLIWNTKF---KKTTP--EFEFFCQSPVLSCCFAKFNPYLILGG  137 (401)
Q Consensus        66 ~~v~~~~~~~~~~~---l~~~~~~~~~~~~~~~d~~v~iwd~~~---~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~g  137 (401)
                      ...+.++|++.|..   |++|+.         .||.|.+||...   +....  ...-.|.+.|..+.|++..+++||+|
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~---------edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG  135 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGL---------EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASG  135 (1049)
T ss_pred             ccceeeeecccCCCccceeeccc---------cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeecc
Confidence            55788999998887   455552         899999999875   11111  11234799999999999998899999


Q ss_pred             ecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccC
Q psy17342        138 TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT  217 (401)
Q Consensus       138 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  217 (401)
                      +.||.|.|||++..+.-....    .....+.|.+++|. ......|++++.+|++.|||++..   ...+.+..   .+
T Consensus       136 a~~geI~iWDlnn~~tP~~~~----~~~~~~eI~~lsWN-rkvqhILAS~s~sg~~~iWDlr~~---~pii~ls~---~~  204 (1049)
T KOG0307|consen  136 ADDGEILIWDLNKPETPFTPG----SQAPPSEIKCLSWN-RKVSHILASGSPSGRAVIWDLRKK---KPIIKLSD---TP  204 (1049)
T ss_pred             CCCCcEEEeccCCcCCCCCCC----CCCCcccceEeccc-hhhhHHhhccCCCCCceeccccCC---Cccccccc---CC
Confidence            999999999998855321111    13456789999994 344667889999999999999863   33333332   12


Q ss_pred             CccceEEEEeccCCCCeEEEEcCCce---EEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeE
Q psy17342        218 KNLAVLSLAFPQNDVNNFVVGCEDGN---VYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSV  294 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~~~~~d~~---i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i  294 (401)
                      ....+..++|+|.....++++++|..   |.+||++... .+++.+++|...|.++.|++.+     ..++++++.|++|
T Consensus       205 ~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-sP~k~~~~H~~GilslsWc~~D-----~~lllSsgkD~~i  278 (1049)
T KOG0307|consen  205 GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-SPLKILEGHQRGILSLSWCPQD-----PRLLLSSGKDNRI  278 (1049)
T ss_pred             CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-CchhhhcccccceeeeccCCCC-----chhhhcccCCCCe
Confidence            33568899999877888888887654   8999998644 3678889999999999999986     6899999999999


Q ss_pred             EEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342        295 KLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT  346 (401)
Q Consensus       295 ~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~  346 (401)
                      .+|+.++++.+.++.....++..+.|+|..+.++++++-||.|.||.+....
T Consensus       279 i~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  279 ICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            9999999999999998888999999999998899999999999999987654

>KOG4283|consensus

Probab=99.95  E-value=8e-26  Score=176.84  Aligned_cols=221  Identities=17%  Similarity=0.237  Sum_probs=179.4

Q ss_pred             cCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccc-------cccccccccCCccceEEEEeccCCCCeEE
Q psy17342        164 MAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQET-------RDLQYNNKQTKNLAVLSLAFPQNDVNNFV  236 (401)
Q Consensus       164 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  236 (401)
                      ..|.+.|+++..- ...+.++++|+.||.|.+||++........       ..+..+-..+|+-.|.++.|-|.|...+.
T Consensus        40 r~HgGsvNsL~id-~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   40 RPHGGSVNSLQID-LTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             ccCCCccceeeec-cccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            5788999999973 457899999999999999999764311111       00111114578899999999999999999


Q ss_pred             EEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceE
Q psy17342        237 VGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVM  316 (401)
Q Consensus       237 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  316 (401)
                      +++.|..+++||.+..+  ....|+ -.+.|++-+++|-..+   .-++|+|..|-.|++-|+.+|..-+++.+|.+.|.
T Consensus       119 ssSFDhtlKVWDtnTlQ--~a~~F~-me~~VYshamSp~a~s---HcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl  192 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQ--EAVDFK-MEGKVYSHAMSPMAMS---HCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL  192 (397)
T ss_pred             cccccceEEEeecccce--eeEEee-cCceeehhhcChhhhc---ceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence            99999999999998443  344444 5577888888886321   35788888899999999999999999999999999


Q ss_pred             EEEECCCCCcEEEEEecCCEEEEEeCCCC------------CCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEE
Q psy17342        317 DVQWSPINPALFATVEVAGRVDLWNLNLD------------TEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITM  384 (401)
Q Consensus       317 ~v~~~~~~~~~l~~~~~d~~i~iwd~~~~------------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~i  384 (401)
                      +|.|+|...++|++|+.||.|++||++..            +..+..+....|.+.+..++|+.+|.++++.+.|..+++
T Consensus       193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~  272 (397)
T KOG4283|consen  193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV  272 (397)
T ss_pred             EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence            99999999999999999999999999854            223334434567788999999999999999999999999


Q ss_pred             EEeccCc
Q psy17342        385 FDVGEVG  391 (401)
Q Consensus       385 w~~~~~~  391 (401)
                      |+..+|+
T Consensus       273 wn~~~G~  279 (397)
T KOG4283|consen  273 WNMESGR  279 (397)
T ss_pred             eecccCc
Confidence            9999875

>KOG1445|consensus

Probab=99.95  E-value=7.3e-26  Score=194.54  Aligned_cols=172  Identities=19%  Similarity=0.277  Sum_probs=137.3

Q ss_pred             ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCC-----CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCe
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK-----AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWS  293 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~  293 (401)
                      ...|+.+.|.|-|...|+++++||.|++|.+..+.     ..+...+.+|...|+++.|+|-.     .+.|++++.|.+
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA-----advLa~asyd~T  701 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLA-----ADVLAVASYDST  701 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchh-----hhHhhhhhccce
Confidence            44567788888888899999999999999876432     23456778899999999999986     689999999999


Q ss_pred             EEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEE
Q psy17342        294 VKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQL  373 (401)
Q Consensus       294 i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  373 (401)
                      |++||+++++....+.+|.+.|.+++|||+|+ .+|+.+.||+|++|..++... +.....-.-...--.+.|.-||+++
T Consensus       702 i~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~-pv~Eg~gpvgtRgARi~wacdgr~v  779 (1012)
T KOG1445|consen  702 IELWDLANAKLYSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSREQ-PVYEGKGPVGTRGARILWACDGRIV  779 (1012)
T ss_pred             eeeeehhhhhhhheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCCC-ccccCCCCccCcceeEEEEecCcEE
Confidence            99999999999999999999999999999998 899999999999999987653 2222111112233457888899999


Q ss_pred             EEEecC----CcEEEEEeccCccceeee
Q psy17342        374 CVGDEK----GAITMFDVGEVGIACLKF  397 (401)
Q Consensus       374 ~~~~~d----g~v~iw~~~~~~~~~l~~  397 (401)
                      ++.+.|    ..|.+||.++-.+..|.+
T Consensus       780 iv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t  807 (1012)
T KOG1445|consen  780 IVVGFDKSSERQVQMYDAQTLDLRPLYT  807 (1012)
T ss_pred             EEecccccchhhhhhhhhhhccCCccee
Confidence            887765    468889887654444443

>KOG0300|consensus

Probab=99.94  E-value=1.6e-25  Score=177.11  Aligned_cols=257  Identities=16%  Similarity=0.206  Sum_probs=210.5

Q ss_pred             EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEE
Q psy17342        115 FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLC  194 (401)
Q Consensus       115 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~  194 (401)
                      .+|...|..++... +..++.+++.|.+.+||.++++.+.      ..+.+|.+.|++++|  ++.+.++++++.|++-.
T Consensus       145 ~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL------~~Y~GH~GSVNsikf--h~s~~L~lTaSGD~taH  215 (481)
T KOG0300|consen  145 EGHKDGIWHVAADS-TQPICGTASADHTARIWSLESGACL------ATYTGHTGSVNSIKF--HNSGLLLLTASGDETAH  215 (481)
T ss_pred             cccccceeeehhhc-CCcceeecccccceeEEeeccccce------eeecccccceeeEEe--ccccceEEEccCCcchH
Confidence            45788999998876 3458999999999999999999876      557899999999999  89999999999999999


Q ss_pred             Eeec------cCCCCCc--------------------------cccccccccccCCccceEEEEeccCCCCeEEEEcCCc
Q psy17342        195 SWSL------EMLSSPQ--------------------------ETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG  242 (401)
Q Consensus       195 ~wd~------~~~~~~~--------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  242 (401)
                      ||..      .....+.                          ..+..+-..+.+|...|.+..|. ..++.+++++-|.
T Consensus       216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL-~gg~Q~vTaSWDR  294 (481)
T KOG0300|consen  216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWL-AGGQQMVTASWDR  294 (481)
T ss_pred             HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhh-cCcceeeeeeccc
Confidence            9972      1100000                          00111111256788889999999 8899999999999


Q ss_pred             eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC-CceEEEeecCCceEEEEEC
Q psy17342        243 NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN-KPVHSFNEFRDYVMDVQWS  321 (401)
Q Consensus       243 ~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~  321 (401)
                      .-.+||.+  +..++..+.||....+-++-+|.      .+++++.+.|.+.++||++.. ..+..|++|...|+++.|.
T Consensus       295 TAnlwDVE--tge~v~~LtGHd~ELtHcstHpt------QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~  366 (481)
T KOG0300|consen  295 TANLWDVE--TGEVVNILTGHDSELTHCSTHPT------QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFN  366 (481)
T ss_pred             cceeeeec--cCceeccccCcchhccccccCCc------ceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEe
Confidence            99999998  55678999999999999999998      589999999999999999853 4567799999999999999


Q ss_pred             CCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccce
Q psy17342        322 PINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIAC  394 (401)
Q Consensus       322 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~  394 (401)
                      .+.+  +++|+.|.+|++||+++.+. +...  .....+++.++.+..++.|+.-.++..|++||++...+..
T Consensus       367 ~dd~--vVSgSDDrTvKvWdLrNMRs-plAT--IRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR  434 (481)
T KOG0300|consen  367 TDDR--VVSGSDDRTVKVWDLRNMRS-PLAT--IRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR  434 (481)
T ss_pred             cCCc--eeecCCCceEEEeeeccccC-ccee--eecCCccceeEeecCCceEEeccCCceEEEEecCCCcccc
Confidence            9875  89999999999999987542 2222  2446789999999989999999999999999998764433

>KOG4378|consensus

Probab=99.94  E-value=3.2e-25  Score=185.17  Aligned_cols=277  Identities=16%  Similarity=0.223  Sum_probs=206.6

Q ss_pred             CcEEEEEeCcCCCCCceEEEe-cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCC-CceeeccccccCCCCcEEEE
Q psy17342         96 DGVCLIWNTKFKKTTPEFEFF-CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKK-TPVHRTPLSVMAHTHPVFCM  173 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~-~~~~~~~~~~~~~~~~v~~~  173 (401)
                      ...++|||.......+.+..+ ....+.+++|+..+.-.+++.+.|..+++|.-..... .+..+     ......-.|+
T Consensus        11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~-----k~~gd~~~Cv   85 (673)
T KOG4378|consen   11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVR-----KLTGDNAFCV   85 (673)
T ss_pred             CCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceee-----ccccchHHHH
Confidence            568999999876666555433 2346999999875422233344577788997665421 11111     1122233455


Q ss_pred             EEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCC
Q psy17342        174 SVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK  253 (401)
Q Consensus       174 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~  253 (401)
                      +.  .....++++|+..+.|+|||++.   ......     +.+|...|+++.++ ....+|++++..|.|.+..+..+.
T Consensus        86 ~~--~s~S~y~~sgG~~~~Vkiwdl~~---kl~hr~-----lkdh~stvt~v~YN-~~DeyiAsvs~gGdiiih~~~t~~  154 (673)
T KOG4378|consen   86 AC--ASQSLYEISGGQSGCVKIWDLRA---KLIHRF-----LKDHQSTVTYVDYN-NTDEYIASVSDGGDIIIHGTKTKQ  154 (673)
T ss_pred             hh--hhcceeeeccCcCceeeehhhHH---HHHhhh-----ccCCcceeEEEEec-CCcceeEEeccCCcEEEEecccCc
Confidence            44  44558999999999999999973   111111     45589999999999 888999999999999999887543


Q ss_pred             CCceeeecCC-CCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEE-eecCCceEEEEECCCCCcEEEEE
Q psy17342        254 AGNVECYEGH-EGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSF-NEFRDYVMDVQWSPINPALFATV  331 (401)
Q Consensus       254 ~~~~~~~~~~-~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~~~  331 (401)
                        ....|... ...|.-+.++|..     ..+|.+++.+|.|.+||+....++..+ ..|..+...|+|+|....+|++.
T Consensus       155 --~tt~f~~~sgqsvRll~ys~sk-----r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsV  227 (673)
T KOG4378|consen  155 --KTTTFTIDSGQSVRLLRYSPSK-----RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSV  227 (673)
T ss_pred             --cccceecCCCCeEEEeeccccc-----ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEe
Confidence              23344433 3345678999985     577888999999999999887777665 46999999999999998899999


Q ss_pred             ecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeeeec
Q psy17342        332 EVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFITS  400 (401)
Q Consensus       332 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~~~  400 (401)
                      +.|..|.+||++..+....+.    -..+...++|+++|.+|+.|...|.|..||++..+ .++.++++
T Consensus       228 G~Dkki~~yD~~s~~s~~~l~----y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k-~Pv~v~sa  291 (673)
T KOG4378|consen  228 GYDKKINIYDIRSQASTDRLT----YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK-APVAVRSA  291 (673)
T ss_pred             cccceEEEeecccccccceee----ecCCcceeeecCCceEEEeecCCceEEEEecccCC-CCceEeee
Confidence            999999999999776655543    36678999999999999999999999999999876 67776653

>KOG0639|consensus

Probab=99.94  E-value=9.4e-26  Score=188.64  Aligned_cols=237  Identities=14%  Similarity=0.194  Sum_probs=197.6

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEec-CCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFNPYLILGGTYSGQIV  144 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~g~~dg~v~  144 (401)
                      .-|.++...|||+.|++|+          .-.++.|||+..........+.. ....++++.+||. ++.+++..||.|.
T Consensus       466 nyiRSckL~pdgrtLivGG----------eastlsiWDLAapTprikaeltssapaCyALa~spDa-kvcFsccsdGnI~  534 (705)
T KOG0639|consen  466 NYIRSCKLLPDGRTLIVGG----------EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIA  534 (705)
T ss_pred             cceeeeEecCCCceEEecc----------ccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEE
Confidence            5589999999999999999          68899999998644333233332 2467889999977 6777788899999


Q ss_pred             EEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342        145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS  224 (401)
Q Consensus       145 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (401)
                      |||+.+....      ..+.+|.+.+.||.+  +++|..|-+|+.|.+|+.||++...++.+ .        .....|.+
T Consensus       535 vwDLhnq~~V------rqfqGhtDGascIdi--s~dGtklWTGGlDntvRcWDlregrqlqq-h--------dF~SQIfS  597 (705)
T KOG0639|consen  535 VWDLHNQTLV------RQFQGHTDGASCIDI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQ-H--------DFSSQIFS  597 (705)
T ss_pred             EEEcccceee------ecccCCCCCceeEEe--cCCCceeecCCCccceeehhhhhhhhhhh-h--------hhhhhhee
Confidence            9999987654      347899999999999  99999999999999999999987443322 1        13568999


Q ss_pred             EEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc
Q psy17342        225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP  304 (401)
Q Consensus       225 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  304 (401)
                      +.++ |.+.++++|-+++.+.+......   ....+.-|..-|.++.|.+.      ++++++.+.|.-+..|...-|..
T Consensus       598 Lg~c-P~~dWlavGMens~vevlh~skp---~kyqlhlheScVLSlKFa~c------GkwfvStGkDnlLnawrtPyGas  667 (705)
T KOG0639|consen  598 LGYC-PTGDWLAVGMENSNVEVLHTSKP---EKYQLHLHESCVLSLKFAYC------GKWFVSTGKDNLLNAWRTPYGAS  667 (705)
T ss_pred             cccC-CCccceeeecccCcEEEEecCCc---cceeecccccEEEEEEeccc------CceeeecCchhhhhhccCccccc
Confidence            9999 89999999999999999877533   24556679999999999998      89999999999999999988988


Q ss_pred             eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeC
Q psy17342        305 VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNL  342 (401)
Q Consensus       305 ~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~  342 (401)
                      ++..+. ...|.++..+.+.+ ++++|+.|....+|.+
T Consensus       668 iFqskE-~SsVlsCDIS~ddk-yIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  668 IFQSKE-SSSVLSCDISFDDK-YIVTGSGDKKATVYEV  703 (705)
T ss_pred             eeeccc-cCcceeeeeccCce-EEEecCCCcceEEEEE
Confidence            887775 67899999999997 8999999988888865

>KOG2919|consensus

Probab=99.94  E-value=1.9e-24  Score=171.33  Aligned_cols=284  Identities=17%  Similarity=0.233  Sum_probs=212.7

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcC-----C-------CCCceEEEecCCCeeEEEEe------
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKF-----K-------KTTPEFEFFCQSPVLSCCFA------  127 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~-----~-------~~~~~~~~~~~~~v~~~~~~------  127 (401)
                      .-...+.|+|||..|++-+          .|..+.+|++..     +       +....+.......|+..+|-      
T Consensus        50 nf~kgckWSPDGSciL~~s----------edn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~  119 (406)
T KOG2919|consen   50 NFLKGCKWSPDGSCILSLS----------EDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSD  119 (406)
T ss_pred             hhhccceeCCCCceEEeec----------ccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccC
Confidence            4466788999999999999          899999999853     1       11222333345678888886      


Q ss_pred             -CCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCC---cEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCC
Q psy17342        128 -KFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTH---PVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSS  203 (401)
Q Consensus       128 -~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~  203 (401)
                       |+ ..++++.+.+.-|++||.-+++.....+.    -.|..   ...+++|  +|+|.+|++|- ...|+++|+...+.
T Consensus       120 qP~-t~l~a~ssr~~PIh~wdaftG~lraSy~~----ydh~de~taAhsL~F--s~DGeqlfaGy-krcirvFdt~RpGr  191 (406)
T KOG2919|consen  120 QPS-TNLFAVSSRDQPIHLWDAFTGKLRASYRA----YDHQDEYTAAHSLQF--SPDGEQLFAGY-KRCIRVFDTSRPGR  191 (406)
T ss_pred             CCc-cceeeeccccCceeeeeccccccccchhh----hhhHHhhhhheeEEe--cCCCCeEeecc-cceEEEeeccCCCC
Confidence             43 36888889999999999999887644332    23333   3467888  99999998864 56899999965444


Q ss_pred             CccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCc
Q psy17342        204 PQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSH  283 (401)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~  283 (401)
                      ....+........+...-+.+++|+|.+...+++|+....+-++.-..  ..++..+.+|.+.|+.+.|+++      ++
T Consensus       192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~--~~pl~llggh~gGvThL~~~ed------Gn  263 (406)
T KOG2919|consen  192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG--RRPLQLLGGHGGGVTHLQWCED------GN  263 (406)
T ss_pred             CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC--CCceeeecccCCCeeeEEeccC------cC
Confidence            333333322224456778999999988888999999999888776653  3467888899999999999999      78


Q ss_pred             EEEEEeC-CCeEEEEEeeC-CCceEEEeecCC-ceEE--EEECCCCCcEEEEEecCCEEEEEeCCCCCC-CcceEEeecC
Q psy17342        284 LYLTSSY-DWSVKLWNIKE-NKPVHSFNEFRD-YVMD--VQWSPINPALFATVEVAGRVDLWNLNLDTE-VPATSAIVEG  357 (401)
Q Consensus       284 ~l~s~~~-d~~i~iwd~~~-~~~~~~~~~~~~-~v~~--v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~  357 (401)
                      .|.+|+. |-.|..||++. +.++..+..|.+ .-..  ....|.++ +|++|+.||.|++||++.... +..+   ..+
T Consensus       264 ~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn~~sv~---~~~  339 (406)
T KOG2919|consen  264 KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGNEVSVT---GNY  339 (406)
T ss_pred             eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCCCccccc---ccc
Confidence            8888876 78999999986 567777777655 2223  44568887 899999999999999998433 3222   355


Q ss_pred             CCCeEEEEecCCCcEEEEEecC
Q psy17342        358 APALSRVTWTPNGTQLCVGDEK  379 (401)
Q Consensus       358 ~~~v~~~~~s~~g~~l~~~~~d  379 (401)
                      ...++.++++|--.++|+++..
T Consensus       340 sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  340 SDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             cccccceecCcccceeeeccCc
Confidence            6779999999998888888754

>KOG1273|consensus

Probab=99.94  E-value=9.4e-25  Score=172.43  Aligned_cols=287  Identities=13%  Similarity=0.180  Sum_probs=206.2

Q ss_pred             eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEE
Q psy17342         68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWD  147 (401)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~  147 (401)
                      -.|+.|++.|.+||.|+          .+|.|.|||+.+.. +.+....|..+|++++||++| +.|++++.|..|.+||
T Consensus        26 a~~~~Fs~~G~~lAvGc----------~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwD   93 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGC----------ANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWD   93 (405)
T ss_pred             cceEEeccCcceeeeec----------cCCcEEEEEccccc-hhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEe
Confidence            78999999999999999          79999999999755 444556689999999999988 7888999999999999


Q ss_pred             CCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEe
Q psy17342        148 TRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF  227 (401)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  227 (401)
                      +..+.....       .....+|+...|.+...+..+++- .+..-.+-++..   +....-... ..........+..|
T Consensus        94 l~~gs~l~r-------irf~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~---~~h~~Lp~d-~d~dln~sas~~~f  161 (405)
T KOG1273|consen   94 LLKGSPLKR-------IRFDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSD---PKHSVLPKD-DDGDLNSSASHGVF  161 (405)
T ss_pred             ccCCCceeE-------EEccCccceeeeccccCCeEEEEE-ecCCcEEEEecC---CceeeccCC-Cccccccccccccc
Confidence            999885432       345789999999544444444443 333344444432   111111100 00001112223357


Q ss_pred             ccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCC-CceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC----C
Q psy17342        228 PQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHE-GPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE----N  302 (401)
Q Consensus       228 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----~  302 (401)
                      . +.++++++|+..|.+.+++..+.  +++..++-.. ..|..+.++..      ++.|+.-+.|..||.|+++.    +
T Consensus       162 d-r~g~yIitGtsKGkllv~~a~t~--e~vas~rits~~~IK~I~~s~~------g~~liiNtsDRvIR~ye~~di~~~~  232 (405)
T KOG1273|consen  162 D-RRGKYIITGTSKGKLLVYDAETL--ECVASFRITSVQAIKQIIVSRK------GRFLIINTSDRVIRTYEISDIDDEG  232 (405)
T ss_pred             c-CCCCEEEEecCcceEEEEecchh--eeeeeeeechheeeeEEEEecc------CcEEEEecCCceEEEEehhhhcccC
Confidence            7 88999999999999999998843  5666666555 67888888877      79999999999999999863    1


Q ss_pred             -----CceEEEee--cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEE
Q psy17342        303 -----KPVHSFNE--FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCV  375 (401)
Q Consensus       303 -----~~~~~~~~--~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  375 (401)
                           ++.+.+..  ....-.+++|+.+|.+++++...-..++||.-..+..+..+..  ........+.|+|-...+++
T Consensus       233 r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG--~kgE~l~DV~whp~rp~i~s  310 (405)
T KOG1273|consen  233 RDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG--TKGEELLDVNWHPVRPIIAS  310 (405)
T ss_pred             ccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC--Cchhheeecccccceeeeee
Confidence                 11122221  1334568999999986666555667899999999988776642  12356788999999998888


Q ss_pred             EecCCcEEEEEeccC
Q psy17342        376 GDEKGAITMFDVGEV  390 (401)
Q Consensus       376 ~~~dg~v~iw~~~~~  390 (401)
                      - ..|.|+||....-
T Consensus       311 i-~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  311 I-ASGVVYIWAVVQV  324 (405)
T ss_pred             c-cCCceEEEEeecc
Confidence            7 6789999998654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=3.2e-24  Score=185.18  Aligned_cols=289  Identities=10%  Similarity=0.027  Sum_probs=194.3

Q ss_pred             ccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEecc
Q psy17342          8 ESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHR   87 (401)
Q Consensus         8 ~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~   87 (401)
                      ..++|++.|+.+++||....+.+.                        .+.     ....+.+++|+|+++.+++++   
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~------------------------~~~-----~~~~~~~l~~~~dg~~l~~~~---   49 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTR------------------------TFP-----VGQRPRGITLSKDGKLLYVCA---   49 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEE------------------------EEE-----CCCCCCceEECCCCCEEEEEE---
Confidence            356788999999999976544110                        010     113366799999998875554   


Q ss_pred             CCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCC
Q psy17342         88 NKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHT  167 (401)
Q Consensus        88 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  167 (401)
                            ..++.|++||..+++....+.  ....+..++|+|++..+++++..++.|++||+.+.+....       ..+.
T Consensus        50 ------~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~-------~~~~  114 (300)
T TIGR03866        50 ------SDSDTIQVIDLATGEVIGTLP--SGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE-------IPVG  114 (300)
T ss_pred             ------CCCCeEEEEECCCCcEEEecc--CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE-------eeCC
Confidence                  168999999998776544332  2344678899998855556666789999999987543211       1223


Q ss_pred             CcEEEEEEeecCCceEEEEEeCCC-cEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEE-cCCceEE
Q psy17342        168 HPVFCMSVIGTQNAHNLISISNDG-RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVG-CEDGNVY  245 (401)
Q Consensus       168 ~~v~~~~~~~~~~~~~l~s~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~  245 (401)
                      ..+.+++|  +|++..+++++.++ .+.+||..... ...  ...      ....+.+++|+ ++++.++++ ..++.|+
T Consensus       115 ~~~~~~~~--~~dg~~l~~~~~~~~~~~~~d~~~~~-~~~--~~~------~~~~~~~~~~s-~dg~~l~~~~~~~~~v~  182 (300)
T TIGR03866       115 VEPEGMAV--SPDGKIVVNTSETTNMAHFIDTKTYE-IVD--NVL------VDQRPRFAEFT-ADGKELWVSSEIGGTVS  182 (300)
T ss_pred             CCcceEEE--CCCCCEEEEEecCCCeEEEEeCCCCe-EEE--EEE------cCCCccEEEEC-CCCCEEEEEcCCCCEEE
Confidence            34678888  89999999988875 46677876421 111  111      12245678999 788877554 4689999


Q ss_pred             EEeCCCCCCCceeeecCC-----CC--ceeeeecCccCCCCCCCcE-EEEEeCCCeEEEEEeeCCCceEEEeecCCceEE
Q psy17342        246 SACRHGNKAGNVECYEGH-----EG--PVVGLSSHRAQGHIDFSHL-YLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMD  317 (401)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~-----~~--~v~~i~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  317 (401)
                      +||+...+  .+..+..+     ..  ....++|+|+      +++ +++.+.++.+.+||+++++.+..+. +...+.+
T Consensus       183 i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~s~d------g~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~  253 (300)
T TIGR03866       183 VIDVATRK--VIKKITFEIPGVHPEAVQPVGIKLTKD------GKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQ  253 (300)
T ss_pred             EEEcCcce--eeeeeeecccccccccCCccceEECCC------CCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcce
Confidence            99997543  33333211     11  2346788888      565 4444557789999998887766554 3557899


Q ss_pred             EEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecC
Q psy17342        318 VQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTP  368 (401)
Q Consensus       318 v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~  368 (401)
                      ++|+|+++.++++.+.++.|++||+++++.+..+..    ....+.++++|
T Consensus       254 ~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~~~  300 (300)
T TIGR03866       254 LAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV----GRLPWGVVVRP  300 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc----ccccceeEeCC
Confidence            999999984444446789999999999876666542    34557787765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1063|consensus

Probab=99.94  E-value=3.4e-24  Score=185.92  Aligned_cols=340  Identities=17%  Similarity=0.199  Sum_probs=248.7

Q ss_pred             chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeE
Q psy17342          2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELL   81 (401)
Q Consensus         2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   81 (401)
                      .|.+.+..|++++.|.++.+|.......+        |.+.             ......-+.........|+|++..++
T Consensus       274 ~W~p~~~~LLSASaDksmiiW~pd~~tGi--------Wv~~-------------vRlGe~gg~a~GF~g~lw~~n~~~ii  332 (764)
T KOG1063|consen  274 WWHPEGLDLLSASADKSMIIWKPDENTGI--------WVDV-------------VRLGEVGGSAGGFWGGLWSPNSNVII  332 (764)
T ss_pred             EEccchhhheecccCcceEEEecCCccce--------EEEE-------------EEeecccccccceeeEEEcCCCCEEE
Confidence            58888999999999999999987655421        1100             00111112235688899999998888


Q ss_pred             EEEeccCCCCCCCCCcEEEEEeCcC-CCCC-ceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeec
Q psy17342         82 LASYHRNKEAPNEPDGVCLIWNTKF-KKTT-PEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRT  159 (401)
Q Consensus        82 ~~~~~~~~~~~~~~d~~v~iwd~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~  159 (401)
                      +-+          ..|..++|..+. .... .....+|...|..++|.|.| .+|++.+.|-+-+++-.-..+..  .-+
T Consensus       333 ~~g----------~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~--wHE  399 (764)
T KOG1063|consen  333 AHG----------RTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQE--WHE  399 (764)
T ss_pred             Eec----------ccCcEEEEeccCccceeeccccccccccceeeeecCCC-CEEEEeccccceeeecccccccc--eee
Confidence            888          589999999332 1111 12334588999999999987 57777789999999876632221  111


Q ss_pred             cccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCC--------------CC---------------Ccccc--
Q psy17342        160 PLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEML--------------SS---------------PQETR--  208 (401)
Q Consensus       160 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~--------------~~---------------~~~~~--  208 (401)
                      ...-+-|...++|+++  -+....|++|.....+++|+....              +.               ....+  
T Consensus       400 iaRPQiHGyDl~c~~~--vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~  477 (764)
T KOG1063|consen  400 IARPQIHGYDLTCLSF--VNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPG  477 (764)
T ss_pred             ecccccccccceeeeh--ccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccc
Confidence            1223678889999999  455778999999999999975310              00               00000  


Q ss_pred             ------------ccc---------c----------------ccccCCccceEEEEeccCCCCeEEEEcCCc-----eEEE
Q psy17342        209 ------------DLQ---------Y----------------NNKQTKNLAVLSLAFPQNDVNNFVVGCEDG-----NVYS  246 (401)
Q Consensus       209 ------------~~~---------~----------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~~  246 (401)
                                  +..         .                .++.+|...|++++.+ |+++++++++...     .|++
T Consensus       478 e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s-~~gnliASaCKS~~~ehAvI~l  556 (764)
T KOG1063|consen  478 ETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAIS-PTGNLIASACKSSLKEHAVIRL  556 (764)
T ss_pred             ccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEec-CCCCEEeehhhhCCccceEEEE
Confidence                        000         0                1467899999999999 8999999998654     4899


Q ss_pred             EeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC-c---eEEEeecCCceEEEEECC
Q psy17342        247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK-P---VHSFNEFRDYVMDVQWSP  322 (401)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~---~~~~~~~~~~v~~v~~~~  322 (401)
                      |+..+-.  ....+.+|.-.|+.++|+|+      +++|++.+.|+++.+|...... .   ....+.|..-|+++.|+|
T Consensus       557 w~t~~W~--~~~~L~~HsLTVT~l~FSpd------g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p  628 (764)
T KOG1063|consen  557 WNTANWL--QVQELEGHSLTVTRLAFSPD------GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP  628 (764)
T ss_pred             Eeccchh--hhheecccceEEEEEEECCC------CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc
Confidence            9987433  45678899999999999999      8999999999999999985421 1   223567999999999999


Q ss_pred             CCCcEEEEEecCCEEEEEeCCCC--CCCcceEEeecCCCCeEEEEecCC-----CcEEEEEecCCcEEEEEec
Q psy17342        323 INPALFATVEVAGRVDLWNLNLD--TEVPATSAIVEGAPALSRVTWTPN-----GTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       323 ~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~~~~~dg~v~iw~~~  388 (401)
                      ++. +|+++|.|..|++|.....  +.+..+ ....+..+|+.++|.|-     +..+++|-..|.|.+|...
T Consensus       629 de~-~FaTaSRDK~VkVW~~~~~~d~~i~~~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  629 DEK-YFATASRDKKVKVWEEPDLRDKYISRF-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             ccc-eeEEecCCceEEEEeccCchhhhhhhh-chhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            997 6999999999999999876  333332 22456788999999873     3478899999999999976

>KOG0267|consensus

Probab=99.94  E-value=7.2e-27  Score=203.26  Aligned_cols=249  Identities=18%  Similarity=0.281  Sum_probs=208.9

Q ss_pred             CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEE
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMS  174 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  174 (401)
                      ..-.+++||.+..       ..|...|.++..-. ..+.+++|+.+..+-+|.+......      +.+.+|..+|.++.
T Consensus        12 ~~t~Lr~~~~~~~-------~~hsaav~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp~~i------~S~~~hespIeSl~   77 (825)
T KOG0267|consen   12 RATKLRVWDTREF-------VAHSAAVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKPNAI------TSLTGHESPIESLT   77 (825)
T ss_pred             eeeccccccchhh-------hhhhhhhceeeeec-cceeeccCCCceeeccccccCCchh------heeeccCCcceeee
Confidence            4667778887621       23466677777644 4478999999999999998776543      45689999999999


Q ss_pred             EeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCC
Q psy17342        175 VIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKA  254 (401)
Q Consensus       175 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~  254 (401)
                      |  +....+|++|+.+|+|++||++...   ....     +.+|...+.++.|+ |-+.+++.|+.|+.+.+||.+  +.
T Consensus        78 f--~~~E~LlaagsasgtiK~wDleeAk---~vrt-----Ltgh~~~~~sv~f~-P~~~~~a~gStdtd~~iwD~R--k~  144 (825)
T KOG0267|consen   78 F--DTSERLLAAGSASGTIKVWDLEEAK---IVRT-----LTGHLLNITSVDFH-PYGEFFASGSTDTDLKIWDIR--KK  144 (825)
T ss_pred             c--CcchhhhcccccCCceeeeehhhhh---hhhh-----hhccccCcceeeec-cceEEeccccccccceehhhh--cc
Confidence            9  8899999999999999999998521   1222     45689999999999 889999999999999999998  45


Q ss_pred             CceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecC
Q psy17342        255 GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVA  334 (401)
Q Consensus       255 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d  334 (401)
                      .+.+.+.+|...|..+.|+|+      +.++++++.|.+++|||+..|+.+.+|+.|.+.+..+.|+|..- ++++|+.|
T Consensus       145 Gc~~~~~s~~~vv~~l~lsP~------Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~-Lla~Gs~d  217 (825)
T KOG0267|consen  145 GCSHTYKSHTRVVDVLRLSPD------GRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEV-LLAPGSSD  217 (825)
T ss_pred             CceeeecCCcceeEEEeecCC------CceeeccCCcceeeeecccccccccccccccccccccccCchhh-hhccCCCC
Confidence            589999999999999999999      89999999999999999999999999999999999999999984 89999999


Q ss_pred             CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCC
Q psy17342        335 GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG  380 (401)
Q Consensus       335 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  380 (401)
                      +++++||+++.+.+....   .....|.+.+|+|++..+++|....
T Consensus       218 ~tv~f~dletfe~I~s~~---~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  218 RTVRFWDLETFEVISSGK---PETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             ceeeeeccceeEEeeccC---CccCCceeeeecCCceeeecCchhh
Confidence            999999999765443322   2356799999999999999887654

>KOG4328|consensus

Probab=99.94  E-value=2e-24  Score=178.62  Aligned_cols=258  Identities=20%  Similarity=0.256  Sum_probs=194.0

Q ss_pred             cCCCeeEEEEeCCCC-ceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEE
Q psy17342        117 CQSPVLSCCFAKFNP-YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCS  195 (401)
Q Consensus       117 ~~~~v~~~~~~~~~~-~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~  195 (401)
                      +...|++++|+|... .++++|+..|+|-+||+...+.  .......+..|.++|.++.|.+ .+...+++.|.||+|++
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~--d~d~v~~f~~hs~~Vs~l~F~P-~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK--DKDGVYLFTPHSGPVSGLKFSP-ANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC--ccCceEEeccCCccccceEecC-CChhheeeeccCceeee
Confidence            478999999999776 6999999999999999964332  1122244678999999999942 34568999999999999


Q ss_pred             eeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCcc
Q psy17342        196 WSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRA  275 (401)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  275 (401)
                      -|++.. .......+.     .....+.++.|+ .+...++.+..=|...+||++.... ....+.-|...|.+++++|.
T Consensus       262 ~D~~~~-i~e~v~s~~-----~d~~~fs~~d~~-~e~~~vl~~~~~G~f~~iD~R~~~s-~~~~~~lh~kKI~sv~~NP~  333 (498)
T KOG4328|consen  262 QDFEGN-ISEEVLSLD-----TDNIWFSSLDFS-AESRSVLFGDNVGNFNVIDLRTDGS-EYENLRLHKKKITSVALNPV  333 (498)
T ss_pred             eeecch-hhHHHhhcC-----ccceeeeecccc-CCCccEEEeecccceEEEEeecCCc-cchhhhhhhcccceeecCCC
Confidence            999752 122222221     144567788888 6677777777777999999986543 24556678889999999999


Q ss_pred             CCCCCCCcEEEEEeCCCeEEEEEeeCCC----ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCC----CCCC
Q psy17342        276 QGHIDFSHLYLTSSYDWSVKLWNIKENK----PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN----LDTE  347 (401)
Q Consensus       276 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~----~~~~  347 (401)
                      .     ..+|+|++.|++++|||++.-.    ++.....|...|.++.|||.+.. |++.+.|..|+|||..    ....
T Consensus       334 ~-----p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p  407 (498)
T KOG4328|consen  334 C-----PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEP  407 (498)
T ss_pred             C-----chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCc
Confidence            7     7899999999999999998632    23344568999999999999985 8888899999999984    2222


Q ss_pred             CcceEEeecCCC--CeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        348 VPATSAIVEGAP--ALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       348 ~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      ...+.....+..  .....+|.|+..++++|-.-..|-|+|-..++
T Consensus       408 ~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  408 LGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ  453 (498)
T ss_pred             cceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence            233322111111  24467899999999999998899999988774

>KOG4283|consensus

Probab=99.93  E-value=2.8e-24  Score=168.27  Aligned_cols=298  Identities=17%  Similarity=0.180  Sum_probs=212.5

Q ss_pred             hhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeee-eeeccccccccceEEEEecCCCCCeEEEE
Q psy17342          6 AGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCR-QFFDEKWSKNRNVTYMDWSTQHPELLLAS   84 (401)
Q Consensus         6 ~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   84 (401)
                      .+.++++|+.||.+-|||++....-.+              +....+... .-..+...|+-+|.++.|-|-..-+++.+
T Consensus        55 egrymlSGgadgsi~v~Dl~n~t~~e~--------------s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss  120 (397)
T KOG4283|consen   55 EGRYMLSGGADGSIAVFDLQNATDYEA--------------SGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS  120 (397)
T ss_pred             cceEEeecCCCccEEEEEeccccchhh--------------ccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence            567899999999999999876551110              011111111 11234446889999999999665555555


Q ss_pred             eccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCC--ceEEEEecCCeEEEEECCCCCCCceeecccc
Q psy17342         85 YHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNP--YLILGGTYSGQIVLWDTRVQKKTPVHRTPLS  162 (401)
Q Consensus        85 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~  162 (401)
                               +-|.+++|||..+.+....+  ..++.|++-+++|-..  .++|+|..+-.|++-|+.++...      -.
T Consensus       121 ---------SFDhtlKVWDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s------H~  183 (397)
T KOG4283|consen  121 ---------SFDHTLKVWDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS------HT  183 (397)
T ss_pred             ---------cccceEEEeecccceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce------ee
Confidence                     37999999999976655444  4468899999998543  48899999999999999998865      34


Q ss_pred             ccCCCCcEEEEEEeecCCce-EEEEEeCCCcEEEeeccCCCCCcccccc------ccc-cccCCccceEEEEeccCCCCe
Q psy17342        163 VMAHTHPVFCMSVIGTQNAH-NLISISNDGRLCSWSLEMLSSPQETRDL------QYN-NKQTKNLAVLSLAFPQNDVNN  234 (401)
Q Consensus       163 ~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~------~~~-~~~~~~~~v~~~~~~~~~~~~  234 (401)
                      +.+|.+.|.++.|  +|..+ .|++|+.||.|++||++........+..      +.. ....|.+.+..++|. .++.+
T Consensus       184 LsGHr~~vlaV~W--sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t-Sd~~~  260 (397)
T KOG4283|consen  184 LSGHRDGVLAVEW--SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT-SDARY  260 (397)
T ss_pred             eccccCceEEEEe--ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec-ccchh
Confidence            6899999999999  66665 5778999999999999864322211111      100 134688999999999 99999


Q ss_pred             EEEEcCCceEEEEeCCCCCCCceeeec-CCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCC
Q psy17342        235 FVVGCEDGNVYSACRHGNKAGNVECYE-GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRD  313 (401)
Q Consensus       235 l~~~~~d~~i~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  313 (401)
                      +++.+.|..+++|+...........-+ .|... .+.+++-.  ..+ ...++---.++.+.++++-.+..+..+..|..
T Consensus       261 l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~-~~~~~~~~--~~~-s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k  336 (397)
T KOG4283|consen  261 LASCGTDDRIRVWNMESGRNTLREFGPIIHNQT-TSFAVHIQ--SMD-SDVFVLFPNDGSLALLNLLEGSFVRRLSTHLK  336 (397)
T ss_pred             hhhccCccceEEeecccCccccccccccccccc-ccceEEEe--ecc-cceEEEEecCCeEEEEEccCceEEEeeecccc
Confidence            999999999999998754332111100 11111 11111100  001 34455445579999999999999999999999


Q ss_pred             ceEEEEECCCCCcEEEEEecCCEEEEEeC
Q psy17342        314 YVMDVQWSPINPALFATVEVAGRVDLWNL  342 (401)
Q Consensus       314 ~v~~v~~~~~~~~~l~~~~~d~~i~iwd~  342 (401)
                      .+.+.++.|+-+ ...++..|+.|..|-.
T Consensus       337 ~i~c~~~~~~fq-~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  337 RINCAAYRPDFE-QCFTGDMNGNIYMWSP  364 (397)
T ss_pred             eeeEEeecCchh-hhhccccCCccccccc
Confidence            999999999987 5788999999999987

>KOG1007|consensus

Probab=99.93  E-value=1.4e-23  Score=163.94  Aligned_cols=262  Identities=18%  Similarity=0.201  Sum_probs=196.2

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC---------ceEEEecCCCeeEEEEeCCCCceE
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT---------PEFEFFCQSPVLSCCFAKFNPYLI  134 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~l  134 (401)
                      |-+.|..++-+|..+.+++..|..  +...+.-..+.||.+......         ..+...+-+.|.|+.|.|++ ..+
T Consensus        62 ~agEvw~las~P~d~~ilaT~yn~--~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns-~kl  138 (370)
T KOG1007|consen   62 HAGEVWDLASSPFDQRILATVYND--TSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS-DKL  138 (370)
T ss_pred             CCcceehhhcCCCCCceEEEEEec--cCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC-Cee
Confidence            458899999999999888888632  111111246789998642211         11222345689999999976 555


Q ss_pred             EEEecCCeEEEEECCCCCCC-ceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccc
Q psy17342        135 LGGTYSGQIVLWDTRVQKKT-PVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYN  213 (401)
Q Consensus       135 ~~g~~dg~v~iw~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~  213 (401)
                      ++- .+..|.+|+++..... .....+.+ .+|....++-+|.++.+++.+++. .|+++..||+++..+....      
T Consensus       139 asm-~dn~i~l~~l~ess~~vaev~ss~s-~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI------  209 (370)
T KOG1007|consen  139 ASM-DDNNIVLWSLDESSKIVAEVLSSES-AEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSI------  209 (370)
T ss_pred             EEe-ccCceEEEEcccCcchheeeccccc-ccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcch------
Confidence            555 3889999999877652 22221111 346778888999777788887775 5789999999963322222      


Q ss_pred             cccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCe
Q psy17342        214 NKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWS  293 (401)
Q Consensus       214 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~  293 (401)
                       ...|...|..+.|+|....+|++++.||.|++||.+..+. ++..+.+|...|.++.|+|..     .+++++++.|..
T Consensus       210 -~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~-pv~el~~HsHWvW~VRfn~~h-----dqLiLs~~SDs~  282 (370)
T KOG1007|consen  210 -EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF-PVQELPGHSHWVWAVRFNPEH-----DQLILSGGSDSA  282 (370)
T ss_pred             -hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc-cccccCCCceEEEEEEecCcc-----ceEEEecCCCce
Confidence             2347888999999977777899999999999999986544 688899999999999999997     789999999999


Q ss_pred             EEEEEeeCC-----------------------------CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        294 VKLWNIKEN-----------------------------KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       294 i~iwd~~~~-----------------------------~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      |.+|....-                             ..+.++..|...|++++|+.-.+++||+-++||.+.|=.+..
T Consensus       283 V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  283 VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             eEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            999965321                             123466779999999999999999999999999998866543

>KOG0321|consensus

Probab=99.93  E-value=1.9e-23  Score=179.71  Aligned_cols=294  Identities=15%  Similarity=0.232  Sum_probs=201.8

Q ss_pred             EEecC--CCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC-----ceEEEecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342         71 MDWST--QHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT-----PEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQI  143 (401)
Q Consensus        71 ~~~~~--~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v  143 (401)
                      ..|++  +.+.+++.+         .++|.|.++|.+...-.     -.....|...|..+.|-| +...|++++.|.++
T Consensus        55 ~sFs~~~n~eHiLava---------dE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~  124 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVA---------DEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTI  124 (720)
T ss_pred             ccccCCCCccceEEEe---------cCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCcee
Confidence            45554  445566655         28999999998752221     122344789999999999 87899999999999


Q ss_pred             EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCC-------------------C
Q psy17342        144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSS-------------------P  204 (401)
Q Consensus       144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-------------------~  204 (401)
                      ++||+.........    .+.+|...|.+++|. ..+...|++|+.||.|.|||++....                   +
T Consensus       125 r~Wdvk~s~l~G~~----~~~GH~~SvkS~cf~-~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp  199 (720)
T KOG0321|consen  125 RPWDVKTSRLVGGR----LNLGHTGSVKSECFM-PTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP  199 (720)
T ss_pred             eeeeeccceeecce----eecccccccchhhhc-cCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence            99999987764331    257999999999994 23556899999999999999974220                   0


Q ss_pred             ccccccccccccCCccc----eEEEEeccCCCCeEEEEcC-CceEEEEeCCCCCC----C--ceeeecCC---CCceeee
Q psy17342        205 QETRDLQYNNKQTKNLA----VLSLAFPQNDVNNFVVGCE-DGNVYSACRHGNKA----G--NVECYEGH---EGPVVGL  270 (401)
Q Consensus       205 ~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~----~--~~~~~~~~---~~~v~~i  270 (401)
                      .....-.......+...    |+.+.|  .|...|++++. |+.|++||++.+..    +  ....+..|   .-.+.++
T Consensus       200 skp~~kr~~k~kA~s~ti~ssvTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL  277 (720)
T KOG0321|consen  200 SKPLKKRIRKWKAASNTIFSSVTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNL  277 (720)
T ss_pred             CchhhccccccccccCceeeeeEEEEE--eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEE
Confidence            00000000011223333    444555  58888998887 99999999985421    1  11222223   2345666


Q ss_pred             ecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC--CceEEEeecCC--ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342        271 SSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN--KPVHSFNEFRD--YVMDVQWSPINPALFATVEVAGRVDLWNLNLDT  346 (401)
Q Consensus       271 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~--~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~  346 (401)
                      .....      |.+|.+.+.|++|+.|++..-  .++..+.++..  .-..-..+|++. ++++|+.|...++|.+.+..
T Consensus       278 ~lDss------Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~-~l~SgSsd~~ayiw~vs~~e  350 (720)
T KOG0321|consen  278 ILDSS------GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC-SLLSGSSDEQAYIWVVSSPE  350 (720)
T ss_pred             EecCC------CCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc-eEeccCCCcceeeeeecCcc
Confidence            66655      556555556999999999763  45555554322  122334689997 79999999999999999877


Q ss_pred             CCcceEEeecCCCCeEEEEecCCC-cEEEEEecCCcEEEEEeccC
Q psy17342        347 EVPATSAIVEGAPALSRVTWTPNG-TQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       347 ~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~iw~~~~~  390 (401)
                      ....+.  .+|...|++++|.|.. .-++++++|-.++||++..+
T Consensus       351 ~~~~~l--~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  351 APPALL--LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             CChhhh--hCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            554443  5788899999998752 34667799999999999665

>KOG1538|consensus

Probab=99.93  E-value=7.8e-24  Score=183.20  Aligned_cols=284  Identities=14%  Similarity=0.246  Sum_probs=222.3

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      ..|..++|-|||..|+.+.           +..+.+||...|.....+. +|...|+|++|+.+| ..+++|+.|..|.+
T Consensus        13 hci~d~afkPDGsqL~lAA-----------g~rlliyD~ndG~llqtLK-gHKDtVycVAys~dG-krFASG~aDK~VI~   79 (1081)
T KOG1538|consen   13 HCINDIAFKPDGTQLILAA-----------GSRLLVYDTSDGTLLQPLK-GHKDTVYCVAYAKDG-KRFASGSADKSVII   79 (1081)
T ss_pred             cchheeEECCCCceEEEec-----------CCEEEEEeCCCcccccccc-cccceEEEEEEccCC-ceeccCCCceeEEE
Confidence            3799999999999999888           7899999999888776554 569999999999988 79999999999999


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEE
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL  225 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (401)
                      |+..-....        --.|++.|.|+.|  +|-...|++++.+ ..-+|.....  .....        .....+.+.
T Consensus        80 W~~klEG~L--------kYSH~D~IQCMsF--NP~~h~LasCsLs-dFglWS~~qK--~V~K~--------kss~R~~~C  138 (1081)
T KOG1538|consen   80 WTSKLEGIL--------KYSHNDAIQCMSF--NPITHQLASCSLS-DFGLWSPEQK--SVSKH--------KSSSRIICC  138 (1081)
T ss_pred             eccccccee--------eeccCCeeeEeec--CchHHHhhhcchh-hccccChhhh--hHHhh--------hhheeEEEe
Confidence            987543321        1479999999999  8999999999875 4678876531  11111        134578899


Q ss_pred             EeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCce
Q psy17342        226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPV  305 (401)
Q Consensus       226 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  305 (401)
                      +|. .|+++++.|-.+|+|.+-+..+.....+....|...+|.+++|+|..+... ...++......++.+|.+. |+.+
T Consensus       139 sWt-nDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~-~di~aV~DW~qTLSFy~Ls-G~~I  215 (1081)
T KOG1538|consen  139 SWT-NDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGR-NDILAVADWGQTLSFYQLS-GKQI  215 (1081)
T ss_pred             eec-CCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCc-cceEEEEeccceeEEEEec-ceee
Confidence            999 999999999999999998766554434445556889999999999864322 4788999999999999885 5555


Q ss_pred             EEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEE
Q psy17342        306 HSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMF  385 (401)
Q Consensus       306 ~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw  385 (401)
                      ..-+.-.-...|+.+-|+|. ++..|+.|+.+++|--+ +-.+.++.   .....|+.++..|++++++.|+.||+|.-|
T Consensus       216 gk~r~L~FdP~CisYf~NGE-y~LiGGsdk~L~~fTR~-GvrLGTvg---~~D~WIWtV~~~PNsQ~v~~GCqDGTiACy  290 (1081)
T KOG1538|consen  216 GKDRALNFDPCCISYFTNGE-YILLGGSDKQLSLFTRD-GVRLGTVG---EQDSWIWTVQAKPNSQYVVVGCQDGTIACY  290 (1081)
T ss_pred             cccccCCCCchhheeccCCc-EEEEccCCCceEEEeec-CeEEeecc---ccceeEEEEEEccCCceEEEEEccCeeehh
Confidence            43333344557899999998 67778889999999654 33333322   246789999999999999999999999999


Q ss_pred             EeccCc
Q psy17342        386 DVGEVG  391 (401)
Q Consensus       386 ~~~~~~  391 (401)
                      ++....
T Consensus       291 Nl~fST  296 (1081)
T KOG1538|consen  291 NLIFST  296 (1081)
T ss_pred             hhHHhH
Confidence            986553

>KOG0290|consensus

Probab=99.92  E-value=4.7e-23  Score=161.11  Aligned_cols=292  Identities=16%  Similarity=0.227  Sum_probs=212.6

Q ss_pred             cceEEEEecC--C-CCCeEEEEeccCCCCCCCCCcEEEEEeCc--CCCCCceEEEecCCCeeEEEEeCCC----CceEEE
Q psy17342         66 RNVTYMDWST--Q-HPELLLASYHRNKEAPNEPDGVCLIWNTK--FKKTTPEFEFFCQSPVLSCCFAKFN----PYLILG  136 (401)
Q Consensus        66 ~~v~~~~~~~--~-~~~l~~~~~~~~~~~~~~~d~~v~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~  136 (401)
                      -.+.++.|+.  + ..+|+.|++-.      ...+.|.|-.+.  +++.+....+.|.-+++.+.|.|+.    +.+||+
T Consensus        45 ~~lya~~Ws~~~~~~~rla~gS~~E------e~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT  118 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDKKFRLAVGSFIE------EYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT  118 (364)
T ss_pred             CceeeeccccCCCcceeEEEeeecc------ccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhc
Confidence            5588899983  3 33578887532      235677776654  4555555557788999999999975    347777


Q ss_pred             EecCCeEEEEECCCCCCCceeeccc---cccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccc
Q psy17342        137 GTYSGQIVLWDTRVQKKTPVHRTPL---SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYN  213 (401)
Q Consensus       137 g~~dg~v~iw~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~  213 (401)
                      .+  -.+++|.+...+........+   ....+..++++..|. .-+.+++.++|-|-+..+||++.+.......+    
T Consensus       119 s~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWn-e~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ----  191 (364)
T KOG0290|consen  119 SS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWN-EVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ----  191 (364)
T ss_pred             cc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccc-cCCcceeEeecccCeEEEEEEeeccccceeeE----
Confidence            53  579999998533221111111   234677899999994 45677899999999999999987422112222    


Q ss_pred             cccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec-CC-CCceeeeecCccCCCCCCCcEEEEEeCC
Q psy17342        214 NKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE-GH-EGPVVGLSSHRAQGHIDFSHLYLTSSYD  291 (401)
Q Consensus       214 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~-~~-~~~v~~i~~~~~~~~~~~~~~l~s~~~d  291 (401)
                       +..|..+|..++|.....+.|++.+.||.+|+||++......+ .++ .. ..+...++|++..     .+++|+-..|
T Consensus       192 -LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI-IYE~p~~~~pLlRLswnkqD-----pnymATf~~d  264 (364)
T KOG0290|consen  192 -LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI-IYEDPSPSTPLLRLSWNKQD-----PNYMATFAMD  264 (364)
T ss_pred             -EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE-EecCCCCCCcceeeccCcCC-----chHHhhhhcC
Confidence             3459999999999955567899999999999999986543322 222 22 5678899999886     7888887765


Q ss_pred             -CeEEEEEeeC-CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC----CcceEEeecCCCCeEEEE
Q psy17342        292 -WSVKLWNIKE-NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE----VPATSAIVEGAPALSRVT  365 (401)
Q Consensus       292 -~~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~  365 (401)
                       ..|.|.|++. ..++.++.+|.+.|++++|.|.....+++++.|.++.|||+...-.    -+.+..  ...+.|+.+.
T Consensus       265 S~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay--~a~~EVNqi~  342 (364)
T KOG0290|consen  265 SNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY--TAGGEVNQIQ  342 (364)
T ss_pred             CceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh--hccceeeeee
Confidence             4799999987 5789999999999999999999888999999999999999976432    122221  2457799999


Q ss_pred             ecCC-CcEEEEEecC
Q psy17342        366 WTPN-GTQLCVGDEK  379 (401)
Q Consensus       366 ~s~~-g~~l~~~~~d  379 (401)
                      |++. +..++.+...
T Consensus       343 Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  343 WSSSQPDWIAICFGK  357 (364)
T ss_pred             ecccCCCEEEEEecC
Confidence            9964 6777776643

>KOG0267|consensus

Probab=99.92  E-value=1.3e-25  Score=195.59  Aligned_cols=222  Identities=18%  Similarity=0.339  Sum_probs=193.3

Q ss_pred             eEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccc
Q psy17342        133 LILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY  212 (401)
Q Consensus       133 ~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~  212 (401)
                      +++.+...-.+++|+.+..            ..|...+.++..  -..+..+++|+.|-.+.+|.+..   +...+.   
T Consensus         6 ~~m~~~~~t~Lr~~~~~~~------------~~hsaav~~lk~--~~s~r~~~~Gg~~~k~~L~~i~k---p~~i~S---   65 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTREF------------VAHSAAVGCLKI--RKSSRSLVTGGEDEKVNLWAIGK---PNAITS---   65 (825)
T ss_pred             ccceeeeeeccccccchhh------------hhhhhhhceeee--eccceeeccCCCceeeccccccC---Cchhhe---
Confidence            4445555666778887543            468888888887  67788999999999999999864   333333   


Q ss_pred             ccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC
Q psy17342        213 NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW  292 (401)
Q Consensus       213 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~  292 (401)
                        +.+|..+|.++.|+ .+..+|+.|+.+|.|++||+.  ..+.++++.+|...+.++.|+|.      +.++++|+.|.
T Consensus        66 --~~~hespIeSl~f~-~~E~LlaagsasgtiK~wDle--eAk~vrtLtgh~~~~~sv~f~P~------~~~~a~gStdt  134 (825)
T KOG0267|consen   66 --LTGHESPIESLTFD-TSERLLAAGSASGTIKVWDLE--EAKIVRTLTGHLLNITSVDFHPY------GEFFASGSTDT  134 (825)
T ss_pred             --eeccCCcceeeecC-cchhhhcccccCCceeeeehh--hhhhhhhhhccccCcceeeeccc------eEEeccccccc
Confidence              34599999999999 899999999999999999998  45578899999999999999999      79999999999


Q ss_pred             eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcE
Q psy17342        293 SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQ  372 (401)
Q Consensus       293 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  372 (401)
                      .+++||++..-+.+.+.+|...+..+.|+|+|+ +++.+++|..++|||+..++....+.   .|...+.++.|+|..-.
T Consensus       135 d~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~agk~~~ef~---~~e~~v~sle~hp~e~L  210 (825)
T KOG0267|consen  135 DLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAGKLSKEFK---SHEGKVQSLEFHPLEVL  210 (825)
T ss_pred             cceehhhhccCceeeecCCcceeEEEeecCCCc-eeeccCCcceeeeecccccccccccc---cccccccccccCchhhh
Confidence            999999998889999999999999999999997 89999999999999999998877764   57788999999999999


Q ss_pred             EEEEecCCcEEEEEecc
Q psy17342        373 LCVGDEKGAITMFDVGE  389 (401)
Q Consensus       373 l~~~~~dg~v~iw~~~~  389 (401)
                      +++|+.|++|++||+++
T Consensus       211 la~Gs~d~tv~f~dlet  227 (825)
T KOG0267|consen  211 LAPGSSDRTVRFWDLET  227 (825)
T ss_pred             hccCCCCceeeeeccce
Confidence            99999999999999985

>KOG1034|consensus

Probab=99.92  E-value=7.3e-23  Score=162.68  Aligned_cols=297  Identities=13%  Similarity=0.161  Sum_probs=214.2

Q ss_pred             cccccccceEEEEecC----CCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCC---CCceEEEe-cCCCeeEEEEeCCC-
Q psy17342         60 EKWSKNRNVTYMDWST----QHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK---TTPEFEFF-CQSPVLSCCFAKFN-  130 (401)
Q Consensus        60 ~~~~~~~~v~~~~~~~----~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~---~~~~~~~~-~~~~v~~~~~~~~~-  130 (401)
                      -+..|+.+|..++|++    +...+++..          ..+.+.+|+.....   .++.+.-. +....+.++|+-+. 
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatv----------G~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~  102 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATV----------GGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSN  102 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEe----------CCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCC
Confidence            3345789999999985    233333333          37899999987432   22222222 56778889997543 


Q ss_pred             --CceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCccc
Q psy17342        131 --PYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQET  207 (401)
Q Consensus       131 --~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~  207 (401)
                        .-++|+|+.-|.|+|.|+.+++..      -.+.+|...|+.+.+  .|. .++++++|.|..|++|++++   ....
T Consensus       103 ~~~p~la~~G~~GvIrVid~~~~~~~------~~~~ghG~sINeik~--~p~~~qlvls~SkD~svRlwnI~~---~~Cv  171 (385)
T KOG1034|consen  103 TGNPFLAAGGYLGVIRVIDVVSGQCS------KNYRGHGGSINEIKF--HPDRPQLVLSASKDHSVRLWNIQT---DVCV  171 (385)
T ss_pred             CCCeeEEeecceeEEEEEecchhhhc------cceeccCccchhhhc--CCCCCcEEEEecCCceEEEEeccC---CeEE
Confidence              237778889999999999988765      235799999999999  555 46899999999999999986   2222


Q ss_pred             cccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCC----Cce----------------------eeec
Q psy17342        208 RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKA----GNV----------------------ECYE  261 (401)
Q Consensus       208 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~----~~~----------------------~~~~  261 (401)
                      ..+..  ..+|...|.++.|+ .++.+|++++.|..+.+|++.....    +..                      .+-.
T Consensus       172 ~VfGG--~egHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~d  248 (385)
T KOG1034|consen  172 AVFGG--VEGHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTD  248 (385)
T ss_pred             EEecc--cccccCcEEEEEEc-CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccc
Confidence            23333  67799999999999 8999999999999999999872110    000                      0112


Q ss_pred             CCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEee-CCC-------------ceEEEeecCCceEEE--EECCCCC
Q psy17342        262 GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIK-ENK-------------PVHSFNEFRDYVMDV--QWSPINP  325 (401)
Q Consensus       262 ~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~-------------~~~~~~~~~~~v~~v--~~~~~~~  325 (401)
                      -|...|.|+.|-        ++++++-|.++.|..|... -++             .+.++.-....|+-+  +|.|-++
T Consensus       249 iHrnyVDCvrw~--------gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~  320 (385)
T KOG1034|consen  249 IHRNYVDCVRWF--------GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK  320 (385)
T ss_pred             cccchHHHHHHH--------hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH
Confidence            467777788876        7899999999999999872 111             223333344455544  4566676


Q ss_pred             cEEEEEecCCEEEEEeCCCCCCCcceEE-eecCCCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        326 ALFATVEVAGRVDLWNLNLDTEVPATSA-IVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       326 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                       +||.|...|.|.+||++.......-.. .......|...+|+.||.+|+...+|++|.-||..+
T Consensus       321 -~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~  384 (385)
T KOG1034|consen  321 -MLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS  384 (385)
T ss_pred             -HHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence             799999999999999998765322111 122356799999999999999999999999998643

>KOG1007|consensus

Probab=99.92  E-value=8.6e-23  Score=159.52  Aligned_cols=283  Identities=15%  Similarity=0.174  Sum_probs=206.0

Q ss_pred             CCcEEEEEeCcC--CCCCceEEEecCCCeeEEEEeCCCCceEEEEecC-------CeEEEEECCCCCCCcee---ecccc
Q psy17342         95 PDGVCLIWNTKF--KKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS-------GQIVLWDTRVQKKTPVH---RTPLS  162 (401)
Q Consensus        95 ~d~~v~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d-------g~v~iw~~~~~~~~~~~---~~~~~  162 (401)
                      .|+.|.+.+++.  +....+..+++.+.|..++-+|..+.+|+++..+       ..+.||.+.........   .....
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~  117 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS  117 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence            578888877765  3344445567789999999999988888887552       24789998754332110   00011


Q ss_pred             c-cCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEecc-CCCCeEEEEcC
Q psy17342        163 V-MAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQ-NDVNNFVVGCE  240 (401)
Q Consensus       163 ~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~  240 (401)
                      + ..+-+.|.|+.|  .|++..+++-. |..|.+|++....+.........  ...+....++-+|+| .+++.++ ...
T Consensus       118 Ldteavg~i~cvew--~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~--s~e~~~~ftsg~WspHHdgnqv~-tt~  191 (370)
T KOG1007|consen  118 LDTEAVGKINCVEW--EPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSE--SAEMRHSFTSGAWSPHHDGNQVA-TTS  191 (370)
T ss_pred             CCHHHhCceeeEEE--cCCCCeeEEec-cCceEEEEcccCcchheeecccc--cccccceecccccCCCCccceEE-EeC
Confidence            1 245569999999  88999888876 78999999986443222222222  334567788889997 4555555 456


Q ss_pred             CceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC-CCceEEEeecCCceEEEE
Q psy17342        241 DGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE-NKPVHSFNEFRDYVMDVQ  319 (401)
Q Consensus       241 d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~v~  319 (401)
                      |+.+..||.+... +....-.+|...|..+.|+|+.     ..+|++|+.||.|+|||.+. ..+++++.+|..+|++|.
T Consensus       192 d~tl~~~D~RT~~-~~~sI~dAHgq~vrdlDfNpnk-----q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR  265 (370)
T KOG1007|consen  192 DSTLQFWDLRTMK-KNNSIEDAHGQRVRDLDFNPNK-----QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR  265 (370)
T ss_pred             CCcEEEEEccchh-hhcchhhhhcceeeeccCCCCc-----eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence            8999999998543 2233445788889999999996     67899999999999999986 568999999999999999


Q ss_pred             ECCCCCcEEEEEecCCEEEEEeCCCCCC------------------------C--cceEEeecCCCCeEEEEecCCCcE-
Q psy17342        320 WSPINPALFATVEVAGRVDLWNLNLDTE------------------------V--PATSAIVEGAPALSRVTWTPNGTQ-  372 (401)
Q Consensus       320 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~------------------------~--~~~~~~~~~~~~v~~~~~s~~g~~-  372 (401)
                      |+|....++.+++.|..|.+|-..+-..                        +  ..+.....|...|.+++||.-..+ 
T Consensus       266 fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi  345 (370)
T KOG1007|consen  266 FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI  345 (370)
T ss_pred             ecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence            9999888999999999999996543110                        0  111223457889999999987665 


Q ss_pred             EEEEecCCcEEEEEecc
Q psy17342        373 LCVGDEKGAITMFDVGE  389 (401)
Q Consensus       373 l~~~~~dg~v~iw~~~~  389 (401)
                      +|+-+.||.+.|=++..
T Consensus       346 FASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  346 FASLSYDGRVIISSVPR  362 (370)
T ss_pred             EEEeccCceEEeecCCh
Confidence            56779999998877754

>KOG0290|consensus

Probab=99.92  E-value=2.8e-23  Score=162.35  Aligned_cols=251  Identities=18%  Similarity=0.277  Sum_probs=188.2

Q ss_pred             cccccceEEEEecCCCC----CeEEEEeccCCCCCCCCCcEEEEEeCcCC--CCCceE------EEecCCCeeEEEEeCC
Q psy17342         62 WSKNRNVTYMDWSTQHP----ELLLASYHRNKEAPNEPDGVCLIWNTKFK--KTTPEF------EFFCQSPVLSCCFAKF  129 (401)
Q Consensus        62 ~~~~~~v~~~~~~~~~~----~l~~~~~~~~~~~~~~~d~~v~iwd~~~~--~~~~~~------~~~~~~~v~~~~~~~~  129 (401)
                      +.|.-+++.+.|.|+..    .|++.+           +..+++|.+...  +.....      ..++..++++..|+.-
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs-----------~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~  161 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATS-----------SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV  161 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcc-----------cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccC
Confidence            45668899999999873    344444           468999998742  111111      1234679999999998


Q ss_pred             CCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccc
Q psy17342        130 NPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRD  209 (401)
Q Consensus       130 ~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~  209 (401)
                      .++++.+.+-|-+..|||++++....+.   ..+..|..+|..++|.. ...+.|++.+.||.+++||++.+....-..+
T Consensus       162 dp~~igtSSiDTTCTiWdie~~~~~~vk---TQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE  237 (364)
T KOG0290|consen  162 DPNLIGTSSIDTTCTIWDIETGVSGTVK---TQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYE  237 (364)
T ss_pred             CcceeEeecccCeEEEEEEeecccccee---eEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEec
Confidence            8999999999999999999987431111   23578999999999942 2356899999999999999997544333333


Q ss_pred             cccccccCCccceEEEEeccCCCCeEEEEcCC-ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEE
Q psy17342        210 LQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED-GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS  288 (401)
Q Consensus       210 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~  288 (401)
                      -..     ...+...++|++.+.+++++-..| ..|.+.|++... .++..+++|.+.|+.++|.|..     +..|+++
T Consensus       238 ~p~-----~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~-tpva~L~~H~a~VNgIaWaPhS-----~~hicta  306 (364)
T KOG0290|consen  238 DPS-----PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC-TPVARLRNHQASVNGIAWAPHS-----SSHICTA  306 (364)
T ss_pred             CCC-----CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC-cceehhhcCcccccceEecCCC-----Cceeeec
Confidence            222     356889999998888888876554 458999998543 4678899999999999999987     7899999


Q ss_pred             eCCCeEEEEEeeCC------CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEE
Q psy17342        289 SYDWSVKLWNIKEN------KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLW  340 (401)
Q Consensus       289 ~~d~~i~iwd~~~~------~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iw  340 (401)
                      +.|..+.|||+...      .++..+. ..+.|+.+.|+|..+..++.+. ++.+.|.
T Consensus       307 GDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kkleiL  362 (364)
T KOG0290|consen  307 GDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEIL  362 (364)
T ss_pred             CCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeEE
Confidence            99999999999752      2344444 3678999999987766777765 5555553

>KOG1273|consensus

Probab=99.92  E-value=5.4e-23  Score=162.59  Aligned_cols=253  Identities=13%  Similarity=0.178  Sum_probs=185.1

Q ss_pred             eeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccC
Q psy17342        121 VLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEM  200 (401)
Q Consensus       121 v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~  200 (401)
                      ..|+.|++.| .+||+|+.||.|.|||+.+....      ..+.+|..+|.+++|  +++|..|+++|.|..+.+||+..
T Consensus        26 a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~ia------r~lsaH~~pi~sl~W--S~dgr~LltsS~D~si~lwDl~~   96 (405)
T KOG1273|consen   26 AECCQFSRWG-DYLAVGCANGRVVIYDFDTFRIA------RMLSAHVRPITSLCW--SRDGRKLLTSSRDWSIKLWDLLK   96 (405)
T ss_pred             cceEEeccCc-ceeeeeccCCcEEEEEccccchh------hhhhccccceeEEEe--cCCCCEeeeecCCceeEEEeccC
Confidence            7899999987 89999999999999999987643      235799999999999  99999999999999999999987


Q ss_pred             CCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeee-cCCC-CceeeeecCccCCC
Q psy17342        201 LSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY-EGHE-GPVVGLSSHRAQGH  278 (401)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~-~~v~~i~~~~~~~~  278 (401)
                      +. +...+.+        ..+|+...|+|.+.+..++.-.+..-.+.++.......+..- .+.. ..-.+..|.+.   
T Consensus        97 gs-~l~rirf--------~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~---  164 (405)
T KOG1273|consen   97 GS-PLKRIRF--------DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR---  164 (405)
T ss_pred             CC-ceeEEEc--------cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCC---
Confidence            44 4444443        458999999987777766665555555555543221111000 0000 11122346666   


Q ss_pred             CCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC-CceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCC-----cceE
Q psy17342        279 IDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR-DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV-----PATS  352 (401)
Q Consensus       279 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~  352 (401)
                         ++++++|...|.+.++|..+.+++..++.-. ..|..+.++..|+ .|+.-+.|..||.|+++.-...     ....
T Consensus       165 ---g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di~~~~r~~e~e~~  240 (405)
T KOG1273|consen  165 ---GKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDIDDEGRDGEVEPE  240 (405)
T ss_pred             ---CCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhhcccCccCCcChh
Confidence               8999999999999999999999999888755 7899999999997 7888889999999998731111     1100


Q ss_pred             Eee---cCCCCeEEEEecCCCcEEEEEec-CCcEEEEEeccCccceeeeeec
Q psy17342        353 AIV---EGAPALSRVTWTPNGTQLCVGDE-KGAITMFDVGEVGIACLKFITS  400 (401)
Q Consensus       353 ~~~---~~~~~v~~~~~s~~g~~l~~~~~-dg~v~iw~~~~~~~~~l~~~~~  400 (401)
                      ...   -....-.+++||.+|.|++.++. ...++||.-..|  ..++.|+.
T Consensus       241 ~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G--sLVKILhG  290 (405)
T KOG1273|consen  241 HKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG--SLVKILHG  290 (405)
T ss_pred             HHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc--ceeeeecC
Confidence            000   01223457889999999988764 356999999988  56776663

>KOG2096|consensus

Probab=99.92  E-value=6.1e-23  Score=162.51  Aligned_cols=286  Identities=13%  Similarity=0.117  Sum_probs=197.5

Q ss_pred             CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCe
Q psy17342          1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL   80 (401)
Q Consensus         1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   80 (401)
                      |+++.-|.+++|.+.|+.||+|++..=.                .++.+-+..  ..      .-+--+.+.|.||-+.+
T Consensus        92 ~~FsSdGK~lat~~~Dr~Ir~w~~~DF~----------------~~eHr~~R~--nv------e~dhpT~V~FapDc~s~  147 (420)
T KOG2096|consen   92 VAFSSDGKKLATISGDRSIRLWDVRDFE----------------NKEHRCIRQ--NV------EYDHPTRVVFAPDCKSV  147 (420)
T ss_pred             eEEcCCCceeEEEeCCceEEEEecchhh----------------hhhhhHhhc--cc------cCCCceEEEECCCcceE
Confidence            5677889999999999999999875421                000100000  00      01347889999999988


Q ss_pred             EEEEeccCCCCCCCCCcEEEEEeCcC---CCCCce--------EEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECC
Q psy17342         81 LLASYHRNKEAPNEPDGVCLIWNTKF---KKTTPE--------FEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTR  149 (401)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~v~iwd~~~---~~~~~~--------~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~  149 (401)
                      +....         ...++++|.+..   |.....        +.-.|.-.+..+-... +..++++++.|..|.+|++.
T Consensus       148 vv~~~---------~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk  217 (420)
T KOG2096|consen  148 VVSVK---------RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK  217 (420)
T ss_pred             EEEEc---------cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC
Confidence            87773         678999998753   111111        1112344566665555 44799999999999999998


Q ss_pred             CCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCC--CCCccccccccccccCCccceEEEEe
Q psy17342        150 VQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEML--SSPQETRDLQYNNKQTKNLAVLSLAF  227 (401)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~  227 (401)
                       ++....      +......-+..+.  +|+|.++++++-.-.|++|.+-..  +.-+.......  +.+|...|..++|
T Consensus       218 -Gq~L~~------idtnq~~n~~aav--SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~--LkGH~saV~~~aF  286 (420)
T KOG2096|consen  218 -GQLLQS------IDTNQSSNYDAAV--SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS--LKGHQSAVLAAAF  286 (420)
T ss_pred             -Cceeee------eccccccccceee--CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhe--eccchhheeeeee
Confidence             443322      1223333445566  999999999999999999997431  22222222222  5669999999999


Q ss_pred             ccCCCCeEEEEcCCceEEEEeCCCC-----CCCceeeec----CCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        228 PQNDVNNFVVGCEDGNVYSACRHGN-----KAGNVECYE----GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       228 ~~~~~~~l~~~~~d~~i~~~~~~~~-----~~~~~~~~~----~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      + ++...+++.+.||.+++||.+-.     ....++...    ...+.-..++.+|+      ++.|+.+. ...+.+|.
T Consensus       287 s-n~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~------g~~lA~s~-gs~l~~~~  358 (420)
T KOG2096|consen  287 S-NSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPS------GDSLAVSF-GSDLKVFA  358 (420)
T ss_pred             C-CCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCC------CcEEEeec-CCceEEEE
Confidence            9 89999999999999999997531     112222221    11223348999998      67777655 67899999


Q ss_pred             eeCCCceEEEe-ecCCceEEEEECCCCCcEEEEEecCCEEEEEe
Q psy17342        299 IKENKPVHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWN  341 (401)
Q Consensus       299 ~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd  341 (401)
                      .++++..-+++ .|...|.+++|+++|+ ++++++ |..+++..
T Consensus       359 se~g~~~~~~e~~h~~~Is~is~~~~g~-~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  359 SEDGKDYPELEDIHSTTISSISYSSDGK-YIATCG-DRYVRVIR  400 (420)
T ss_pred             cccCccchhHHHhhcCceeeEEecCCCc-EEeeec-ceeeeeec
Confidence            99988777765 4899999999999998 788886 78888876

>KOG2055|consensus

Probab=99.91  E-value=7.3e-23  Score=169.64  Aligned_cols=275  Identities=12%  Similarity=0.138  Sum_probs=206.3

Q ss_pred             ccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCC-CeEEEEec
Q psy17342          8 ESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHP-ELLLASYH   86 (401)
Q Consensus         8 ~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~   86 (401)
                      ..+++++.||.+|++.+.+...-                     .+...++.     +-+|.+.+|.|+|. .+++++  
T Consensus       226 plllvaG~d~~lrifqvDGk~N~---------------------~lqS~~l~-----~fPi~~a~f~p~G~~~i~~s~--  277 (514)
T KOG2055|consen  226 PLLLVAGLDGTLRIFQVDGKVNP---------------------KLQSIHLE-----KFPIQKAEFAPNGHSVIFTSG--  277 (514)
T ss_pred             ceEEEecCCCcEEEEEecCccCh---------------------hheeeeec-----cCccceeeecCCCceEEEecc--
Confidence            45789999999999987766511                     11111111     26799999999999 677777  


Q ss_pred             cCCCCCCCCCcEEEEEeCcCCCCCceEEEe--cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecccccc
Q psy17342         87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFF--CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVM  164 (401)
Q Consensus        87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~  164 (401)
                              ....++.||+.+.+..+.....  ....+.....+|++ ++|+..+..|.|.+....+++....       .
T Consensus       278 --------rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s-------~  341 (514)
T KOG2055|consen  278 --------RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITS-------F  341 (514)
T ss_pred             --------cceEEEEeeccccccccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhhe-------e
Confidence                    6889999999876654432222  23467788889988 5777778999999999888876422       2


Q ss_pred             CCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceE
Q psy17342        165 AHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNV  244 (401)
Q Consensus       165 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  244 (401)
                      .-.+.|..++|  +.++..|++++.+|.|.+||++.. .....+.-.      ....-++++.+ .++.+||+|+..|.|
T Consensus       342 KieG~v~~~~f--sSdsk~l~~~~~~GeV~v~nl~~~-~~~~rf~D~------G~v~gts~~~S-~ng~ylA~GS~~GiV  411 (514)
T KOG2055|consen  342 KIEGVVSDFTF--SSDSKELLASGGTGEVYVWNLRQN-SCLHRFVDD------GSVHGTSLCIS-LNGSYLATGSDSGIV  411 (514)
T ss_pred             eeccEEeeEEE--ecCCcEEEEEcCCceEEEEecCCc-ceEEEEeec------Cccceeeeeec-CCCceEEeccCcceE
Confidence            34678999999  899999999999999999999863 222222111      11234677777 789999999999999


Q ss_pred             EEEeCCC----CCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC--CCeEEEEEeeCCCceEEEeec---CCce
Q psy17342        245 YSACRHG----NKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY--DWSVKLWNIKENKPVHSFNEF---RDYV  315 (401)
Q Consensus       245 ~~~~~~~----~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~---~~~v  315 (401)
                      .+||.++    ...+++..+..-...|++++|+|+      .++||.+|.  +..+|+-.+.+......|...   -+.|
T Consensus       412 NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d------~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~v  485 (514)
T KOG2055|consen  412 NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD------AQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHV  485 (514)
T ss_pred             EEeccchhhccCCCCchhhhhhhheeeeeeeeCcc------hhhhhhhhhccccceEEEeccceeeeccCCCCCCcccce
Confidence            9999643    345567777777789999999999      789888875  667888888766555555442   3468


Q ss_pred             EEEEECCCCCcEEEEEecCCEEEEEeCC
Q psy17342        316 MDVQWSPINPALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       316 ~~v~~~~~~~~~l~~~~~d~~i~iwd~~  343 (401)
                      +|++|+|.+. ++|.|..+|.+.+|.+.
T Consensus       486 tc~aFSP~sG-~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  486 TCMAFSPNSG-YLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             EEEEecCCCc-eEEeecCCCceeeEeec
Confidence            9999999987 89999999999999874

>KOG1188|consensus

Probab=99.91  E-value=1.6e-22  Score=161.52  Aligned_cols=276  Identities=14%  Similarity=0.222  Sum_probs=194.0

Q ss_pred             CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCC-CCceEEEEecCCeEEEEECCCCCCCceeeccccccCCC-CcEEE
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF-NPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHT-HPVFC  172 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~-~~v~~  172 (401)
                      +.|.|++||..+++.+..+... +..++.+.|... +++.+.+|+.||+|++||++.....+...    +..+. .+-.+
T Consensus        48 Sngsv~lyd~~tg~~l~~fk~~-~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~----~~~~~~~~f~~  122 (376)
T KOG1188|consen   48 SNGSVRLYDKGTGQLLEEFKGP-PATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS----WTQQSGTPFIC  122 (376)
T ss_pred             cCCeEEEEeccchhhhheecCC-CCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee----ccCCCCCcceE
Confidence            7999999999998888777654 778888999774 67889999999999999999877654432    34444 45556


Q ss_pred             EEEeecCCceEEEEEeC----CCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEe
Q psy17342        173 MSVIGTQNAHNLISISN----DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSAC  248 (401)
Q Consensus       173 ~~~~~~~~~~~l~s~~~----dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~  248 (401)
                      ++.  +-.++.+++|..    +-.|.+||++...++...  +    ...|...|+++.|+|.+.++|++|+.||.|.+||
T Consensus       123 ld~--nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~--~----~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD  194 (376)
T KOG1188|consen  123 LDL--NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ--L----NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD  194 (376)
T ss_pred             eec--cCcCCeEEeccccccCceEEEEEEeccccchhhh--h----hhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence            654  445666666643    557999999964433221  1    3458999999999999999999999999999999


Q ss_pred             CCCCCC-CceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeec------------CCce
Q psy17342        249 RHGNKA-GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEF------------RDYV  315 (401)
Q Consensus       249 ~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------------~~~v  315 (401)
                      +..... ..+...-.|...|.++.|....     -+.+.+-+...+..+|+++.+.+...+...            ...+
T Consensus       195 ~~~d~EeDaL~~viN~~sSI~~igw~~~~-----ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~  269 (376)
T KOG1188|consen  195 TKKDNEEDALLHVINHGSSIHLIGWLSKK-----YKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYV  269 (376)
T ss_pred             cCCCcchhhHHHhhcccceeeeeeeecCC-----cceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence            875322 1222333477889999999763     346888888999999999988766555431            1112


Q ss_pred             EEEEECCCCCcEEEEEec-CCEEEEEeCC---CCCCCcceEEeec-CCCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        316 MDVQWSPINPALFATVEV-AGRVDLWNLN---LDTEVPATSAIVE-GAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       316 ~~v~~~~~~~~~l~~~~~-d~~i~iwd~~---~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      ... .+|.+..+++.++. -|...++-+.   ++..........+ |...|+++.|...+.++.+|+.||.+.+|..+.
T Consensus       270 I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  270 INE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED  347 (376)
T ss_pred             eec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence            222 23443334555444 5666666544   2322222222223 556788899998899999999999999999543

>KOG0650|consensus

Probab=99.91  E-value=1.9e-22  Score=172.39  Aligned_cols=279  Identities=15%  Similarity=0.206  Sum_probs=204.2

Q ss_pred             hhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCC-eEEEE
Q psy17342          6 AGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPE-LLLAS   84 (401)
Q Consensus         6 ~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~   84 (401)
                      -|+.+++|+.||++|||.+.+..++..+                       .+.      +.|.|++|+|.+.. +++++
T Consensus       411 ~G~wlasGsdDGtvriWEi~TgRcvr~~-----------------------~~d------~~I~~vaw~P~~~~~vLAvA  461 (733)
T KOG0650|consen  411 SGEWLASGSDDGTVRIWEIATGRCVRTV-----------------------QFD------SEIRSVAWNPLSDLCVLAVA  461 (733)
T ss_pred             CcceeeecCCCCcEEEEEeecceEEEEE-----------------------eec------ceeEEEEecCCCCceeEEEE
Confidence            4788999999999999999887743222                       122      45999999998764 44444


Q ss_pred             eccC-------------------CCCC----CCCCcEEEEEeCcCCCCC---ceEEEecCCCeeEEEEeCCCCceEEEEe
Q psy17342         85 YHRN-------------------KEAP----NEPDGVCLIWNTKFKKTT---PEFEFFCQSPVLSCCFAKFNPYLILGGT  138 (401)
Q Consensus        85 ~~~~-------------------~~~~----~~~d~~v~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~g~  138 (401)
                      ++..                   .|+.    ...++.+..|.-......   ....+.|..+|..+.|+..| .+|++..
T Consensus       462 ~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV~  540 (733)
T KOG0650|consen  462 VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATVM  540 (733)
T ss_pred             ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEec
Confidence            4331                   0111    234556667765532111   23556788999999999988 6776654


Q ss_pred             c---CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccc
Q psy17342        139 Y---SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNK  215 (401)
Q Consensus       139 ~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  215 (401)
                      .   ...|.|.++......      ..+....+.|.++.|  +|...+|+.++. ..|++||+..   ...+.++.    
T Consensus       541 ~~~~~~~VliHQLSK~~sQ------~PF~kskG~vq~v~F--HPs~p~lfVaTq-~~vRiYdL~k---qelvKkL~----  604 (733)
T KOG0650|consen  541 PDSGNKSVLIHQLSKRKSQ------SPFRKSKGLVQRVKF--HPSKPYLFVATQ-RSVRIYDLSK---QELVKKLL----  604 (733)
T ss_pred             cCCCcceEEEEeccccccc------CchhhcCCceeEEEe--cCCCceEEEEec-cceEEEehhH---HHHHHHHh----
Confidence            3   356889998766543      224456778899999  888888888776 4899999974   22222222    


Q ss_pred             cCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEE
Q psy17342        216 QTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVK  295 (401)
Q Consensus       216 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~  295 (401)
                       .....|..++.+ +.|..|++|+.|+.+..+|+.-. .++.+++.-|...+++++|++.      -.+|++|+.||++.
T Consensus       605 -tg~kwiS~msih-p~GDnli~gs~d~k~~WfDldls-skPyk~lr~H~~avr~Va~H~r------yPLfas~sdDgtv~  675 (733)
T KOG0650|consen  605 -TGSKWISSMSIH-PNGDNLILGSYDKKMCWFDLDLS-SKPYKTLRLHEKAVRSVAFHKR------YPLFASGSDDGTVI  675 (733)
T ss_pred             -cCCeeeeeeeec-CCCCeEEEecCCCeeEEEEcccC-cchhHHhhhhhhhhhhhhhccc------cceeeeecCCCcEE
Confidence             255689999999 89999999999999999998743 3467788889999999999998      58999999999999


Q ss_pred             EEEee------CC---CceEEEeecCCc----eEEEEECCCCCcEEEEEecCCEEEEE
Q psy17342        296 LWNIK------EN---KPVHSFNEFRDY----VMDVQWSPINPALFATVEVAGRVDLW  340 (401)
Q Consensus       296 iwd~~------~~---~~~~~~~~~~~~----v~~v~~~~~~~~~l~~~~~d~~i~iw  340 (401)
                      |+--.      ..   -++..+.+|...    |..+.|+|..+ .|.+++.||+|++|
T Consensus       676 Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp-WLfsAGAd~tirlf  732 (733)
T KOG0650|consen  676 VFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP-WLFSAGADGTIRLF  732 (733)
T ss_pred             EEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCc-eEEecCCCceEEee
Confidence            98532      11   355667777654    88999999998 67778889999998

>KOG1445|consensus

Probab=99.90  E-value=1.7e-22  Score=174.08  Aligned_cols=121  Identities=14%  Similarity=0.346  Sum_probs=105.9

Q ss_pred             ceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC-------CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEE
Q psy17342        266 PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN-------KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVD  338 (401)
Q Consensus       266 ~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~  338 (401)
                      .|+.+.|.|.+     ...|+.++.||.|++|.+..+       .+...+..|...|+++.|+|--..+|+++++|.+|+
T Consensus       629 ~vtDl~WdPFD-----~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~  703 (1012)
T KOG1445|consen  629 LVTDLHWDPFD-----DERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIE  703 (1012)
T ss_pred             eeeecccCCCC-----hHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceee
Confidence            37788888876     689999999999999999653       566778899999999999998766899999999999


Q ss_pred             EEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCcccee
Q psy17342        339 LWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACL  395 (401)
Q Consensus       339 iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l  395 (401)
                      +||+.+.+....+   .+|...|..++|||||+.+|+.+.||+|++|+.++++ +.+
T Consensus       704 lWDl~~~~~~~~l---~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e-~pv  756 (1012)
T KOG1445|consen  704 LWDLANAKLYSRL---VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE-QPV  756 (1012)
T ss_pred             eeehhhhhhhhee---ccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC-Ccc
Confidence            9999998765554   5889999999999999999999999999999998876 443

>KOG2919|consensus

Probab=99.90  E-value=1.1e-21  Score=155.71  Aligned_cols=259  Identities=17%  Similarity=0.226  Sum_probs=180.8

Q ss_pred             eeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccc------cc-cCCCCcEEEEEEee-----cCCceEEEEEe
Q psy17342        121 VLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPL------SV-MAHTHPVFCMSVIG-----TQNAHNLISIS  188 (401)
Q Consensus       121 v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~------~~-~~~~~~v~~~~~~~-----~~~~~~l~s~~  188 (401)
                      ...+.|+||| ..|++-+.|..+.+|++...-.......+.      .+ ......|..-+|.+     .|+..++++.+
T Consensus        52 ~kgckWSPDG-SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   52 LKGCKWSPDG-SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hccceeCCCC-ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            4568999999 556666789999999986421110000000      01 12345677777752     46778999999


Q ss_pred             CCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCC-CCCCCceeee-----cC
Q psy17342        189 NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRH-GNKAGNVECY-----EG  262 (401)
Q Consensus       189 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~-~~~~~~~~~~-----~~  262 (401)
                      .+.-|++||.-++. ....+....  ....-..-.+++|+ +|+.+|++|. ...|+++|+. ......+...     .+
T Consensus       131 r~~PIh~wdaftG~-lraSy~~yd--h~de~taAhsL~Fs-~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~g  205 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGK-LRASYRAYD--HQDEYTAAHSLQFS-PDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFG  205 (406)
T ss_pred             ccCceeeeeccccc-cccchhhhh--hHHhhhhheeEEec-CCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccc
Confidence            99999999987633 333332222  01122344689999 8999988765 5789999983 2222122221     23


Q ss_pred             CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeC
Q psy17342        263 HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNL  342 (401)
Q Consensus       263 ~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~  342 (401)
                      ..+-|.+++|+|..     ...++.|+...++-||.-....++..+-+|.+.|+.++|.++|..++..+-.|-.|..||+
T Consensus       206 q~giisc~a~sP~~-----~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDi  280 (406)
T KOG2919|consen  206 QKGIISCFAFSPMD-----SKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDI  280 (406)
T ss_pred             ccceeeeeeccCCC-----CcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence            46788999999986     6799999999999999988899999999999999999999999865555556889999999


Q ss_pred             CCCCC-CcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        343 NLDTE-VPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       343 ~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      +..+. +..+.........-.-+...|+|++|++|+.||.|++||+++-
T Consensus       281 R~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~  329 (406)
T KOG2919|consen  281 RYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL  329 (406)
T ss_pred             hhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC
Confidence            86543 2222222221222223555688999999999999999999883

>KOG4227|consensus

Probab=99.90  E-value=9.6e-22  Score=160.10  Aligned_cols=297  Identities=11%  Similarity=0.094  Sum_probs=221.4

Q ss_pred             cccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcC------CCCCceEEEecCCCeeEEEEeCCCCce
Q psy17342         60 EKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKF------KKTTPEFEFFCQSPVLSCCFAKFNPYL  133 (401)
Q Consensus        60 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~  133 (401)
                      ....|.+.|.++.|+.++++|++|+          .|..+++|+++.      .+.+....-+|.+.|.|++|.. +...
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGG----------DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~  119 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGG----------DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRF  119 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecC----------CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCee
Confidence            4456899999999999999999999          899999999863      2333333344678999999998 4489


Q ss_pred             EEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccc
Q psy17342        134 ILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYN  213 (401)
Q Consensus       134 l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~  213 (401)
                      +++|..+++|.+-|+++.+...+..    -....+.|+.+..  +|..+.|++.+.++.|.+||.+....+...+-+.. 
T Consensus       120 ~~SG~~~~~VI~HDiEt~qsi~V~~----~~~~~~~VY~m~~--~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN-  192 (609)
T KOG4227|consen  120 LYSGERWGTVIKHDIETKQSIYVAN----ENNNRGDVYHMDQ--HPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN-  192 (609)
T ss_pred             EecCCCcceeEeeecccceeeeeec----ccCcccceeeccc--CCCCceEEEEecCceEEEEeccCCCCCCceeeecC-
Confidence            9999999999999999987653321    1233458999998  88899999999999999999986444444433332 


Q ss_pred             cccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC------CCCceeeeecCccCCCCCCCcEEEE
Q psy17342        214 NKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG------HEGPVVGLSSHRAQGHIDFSHLYLT  287 (401)
Q Consensus       214 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~------~~~~v~~i~~~~~~~~~~~~~~l~s  287 (401)
                          ......++.|+|....+|++.+..+-+-+||.+..... +..+.+      ....-.++.|+|+      ++.|++
T Consensus       193 ----~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~-~~~~~~~~~L~~~~~~~M~~~~~~~------G~Q~ms  261 (609)
T KOG4227|consen  193 ----SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP-VYQRSMFKGLPQENTEWMGSLWSPS------GNQFMS  261 (609)
T ss_pred             ----CCccceeeeecCCCceeEEeccccCCCCceeeccccch-HHhhhccccCcccchhhhheeeCCC------CCeehh
Confidence                45677889999888899999999999999999854432 222211      1223367889998      788887


Q ss_pred             EeCCCeEEEEEeeCCCc-eEEEeecC-------CceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCC-----------
Q psy17342        288 SSYDWSVKLWNIKENKP-VHSFNEFR-------DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV-----------  348 (401)
Q Consensus       288 ~~~d~~i~iwd~~~~~~-~~~~~~~~-------~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------  348 (401)
                      --....-.+||+.+.++ +..+. |+       ..+.+++|..+.  -+++|+.+=.|++|.+......           
T Consensus       262 iRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~  338 (609)
T KOG4227|consen  262 IRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEE  338 (609)
T ss_pred             hhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeecce--eeeccCcccceEEEecCCCccccCccccCcchh
Confidence            76666677889876443 33333 22       246678888775  4899999999999988542111           


Q ss_pred             ---------cceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEec
Q psy17342        349 ---------PATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       349 ---------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~  388 (401)
                               ..+....+|...++.+.|+|...+|++.+-...+++|.-.
T Consensus       339 ~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  339 EMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             hCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence                     1223345677888999999999999999999999999754

>KOG0322|consensus

Probab=99.90  E-value=2e-22  Score=155.45  Aligned_cols=289  Identities=11%  Similarity=0.136  Sum_probs=202.5

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      .|...|+++.|-.+++ |.++.          ..|.|++|++.+....+.+...+...|+.+.--|++  .+.+-+.|+.
T Consensus        12 p~~~~v~s~~fqa~~r-L~sg~----------~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d--~l~tqgRd~~   78 (323)
T KOG0322|consen   12 PHSSSVTSVLFQANER-LMSGL----------SVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND--SLDTQGRDPL   78 (323)
T ss_pred             cccchheehhhccchh-hhccc----------ccceEEEEEeecCccchhhhhhccceeeceeecCCc--chhhcCCCce
Confidence            5668899999998885 77777          799999999999888887776778899999998853  4556669999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEee---cCCc----eEEEEEeCCCc-EEEeeccCCCCCcccccccccc
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG---TQNA----HNLISISNDGR-LCSWSLEMLSSPQETRDLQYNN  214 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~----~~l~s~~~dg~-i~~wd~~~~~~~~~~~~~~~~~  214 (401)
                      +.+|++......         ..|.-.++++.|.+   .+.+    ..++.-++... +.+-|.   +.+.+. .+....
T Consensus        79 L~lw~ia~s~~i---------~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~---g~~tqv-~i~dd~  145 (323)
T KOG0322|consen   79 LILWTIAYSAFI---------SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG---GDTTQV-QIADDS  145 (323)
T ss_pred             EEEEEccCcceE---------EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhcc---Ccccee-EccCch
Confidence            999999875543         23433444444421   0110    11111111100 111111   111111 111111


Q ss_pred             ccCCccceEEEEeccCCCC--eEEEEcCCceEEEEeCCCCCC--------CceeeecCCCCceeeeecCccCCCCCCCcE
Q psy17342        215 KQTKNLAVLSLAFPQNDVN--NFVVGCEDGNVYSACRHGNKA--------GNVECYEGHEGPVVGLSSHRAQGHIDFSHL  284 (401)
Q Consensus       215 ~~~~~~~v~~~~~~~~~~~--~l~~~~~d~~i~~~~~~~~~~--------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~  284 (401)
                      ..+..+.++|..+....+.  .+++|.++|.+.+||+.....        +.......|..+|.++.+.+.      ...
T Consensus       146 ~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~------~~r  219 (323)
T KOG0322|consen  146 ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS------CDR  219 (323)
T ss_pred             hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh------hcC
Confidence            3345567777775533333  467899999999999985411        233445579999999999976      456


Q ss_pred             EEEEeCCCeEEEEEeeCC--C--ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCC
Q psy17342        285 YLTSSYDWSVKLWNIKEN--K--PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPA  360 (401)
Q Consensus       285 l~s~~~d~~i~iwd~~~~--~--~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  360 (401)
                      =++|+.+..+..|++...  .  .-.++...+..|..+..-||++ ++|+++.|+.||+|..++...+..++   -|...
T Consensus       220 Gisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~pLAVLk---yHsag  295 (323)
T KOG0322|consen  220 GISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLNPLAVLK---YHSAG  295 (323)
T ss_pred             CcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCCchhhhh---hhhcc
Confidence            678888889999998643  2  1223333456789999999998 99999999999999999999888775   46788


Q ss_pred             eEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342        361 LSRVTWTPNGTQLCVGDEKGAITMFDV  387 (401)
Q Consensus       361 v~~~~~s~~g~~l~~~~~dg~v~iw~~  387 (401)
                      |++++|+|+...+|+++.|++|.+|++
T Consensus       296 vn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  296 VNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999999986

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.89  E-value=8.9e-20  Score=158.92  Aligned_cols=284  Identities=12%  Similarity=0.078  Sum_probs=178.5

Q ss_pred             CCcEEEEEeCcC-CCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCC-CCCceeeccccccCCCCcEEE
Q psy17342         95 PDGVCLIWNTKF-KKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQ-KKTPVHRTPLSVMAHTHPVFC  172 (401)
Q Consensus        95 ~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~-~~~~~~~~~~~~~~~~~~v~~  172 (401)
                      .++.|.+|++.+ ++......+...+....++++|+++.+.+++..++.|.+|+++.. .......     ....+....
T Consensus        10 ~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~-----~~~~~~p~~   84 (330)
T PRK11028         10 ESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE-----SPLPGSPTH   84 (330)
T ss_pred             CCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee-----ecCCCCceE
Confidence            689999999964 332222333445678889999988544455456888999999732 2111111     112234567


Q ss_pred             EEEeecCCceEEEEEeC-CCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEE-EcCCceEEEEeCC
Q psy17342        173 MSVIGTQNAHNLISISN-DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV-GCEDGNVYSACRH  250 (401)
Q Consensus       173 ~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d~~i~~~~~~  250 (401)
                      +++  +|+++++++++. ++.|.+|+++..+.........     .....+.+++++ |+++++++ ...++.|.+||+.
T Consensus        85 i~~--~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~-p~g~~l~v~~~~~~~v~v~d~~  156 (330)
T PRK11028         85 IST--DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-----EGLEGCHSANID-PDNRTLWVPCLKEDRIRLFTLS  156 (330)
T ss_pred             EEE--CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-----cCCCcccEeEeC-CCCCEEEEeeCCCCEEEEEEEC
Confidence            888  899998888764 8899999996422221111110     122346678889 67777754 5567999999997


Q ss_pred             CCCCCce------eeecCCCCceeeeecCccCCCCCCCcEEEEEeC-CCeEEEEEeeC--CC--ceEEEeec------CC
Q psy17342        251 GNKAGNV------ECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DWSVKLWNIKE--NK--PVHSFNEF------RD  313 (401)
Q Consensus       251 ~~~~~~~------~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~--~~--~~~~~~~~------~~  313 (401)
                      ... .+.      ..... ......+.|+|+      +++++++.. +++|.+|++..  ++  .+..+..+      ..
T Consensus       157 ~~g-~l~~~~~~~~~~~~-g~~p~~~~~~pd------g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~  228 (330)
T PRK11028        157 DDG-HLVAQEPAEVTTVE-GAGPRHMVFHPN------QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTR  228 (330)
T ss_pred             CCC-cccccCCCceecCC-CCCCceEEECCC------CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCc
Confidence            421 111      11111 233567899998      677777765 89999999974  22  23333221      12


Q ss_pred             ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEec-CCcEEEEEec--cC
Q psy17342        314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDE-KGAITMFDVG--EV  390 (401)
Q Consensus       314 ~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~v~iw~~~--~~  390 (401)
                      ....+.++|+++.++++...++.|.+|++........+............++++|+|++|+++.. +++|.+|++.  ++
T Consensus       229 ~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g  308 (330)
T PRK11028        229 WAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETG  308 (330)
T ss_pred             cceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCC
Confidence            23468999999855554455789999999754422222222222234567999999999998775 8899999985  44


Q ss_pred             ccceeeeee
Q psy17342        391 GIACLKFIT  399 (401)
Q Consensus       391 ~~~~l~~~~  399 (401)
                      .++.+..+.
T Consensus       309 ~l~~~~~~~  317 (330)
T PRK11028        309 LLTELGRYA  317 (330)
T ss_pred             cEEEccccc
Confidence            455555443

>KOG1517|consensus

Probab=99.89  E-value=3.6e-21  Score=174.86  Aligned_cols=299  Identities=15%  Similarity=0.193  Sum_probs=212.8

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe--cCCCeeEEEEeC-CCCceEEEEecCCe
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF--CQSPVLSCCFAK-FNPYLILGGTYSGQ  142 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~-~~~~~l~~g~~dg~  142 (401)
                      .+-..+.|+|-.+.++++.          ..-.|+|||.+.++....+..+  ....|+.+.+-. +...++.+|+.||.
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad----------~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGv 1134 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAAD----------DRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGV 1134 (1387)
T ss_pred             CCCceeeecCCCceeEEcC----------CcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCce
Confidence            3566788999998898888          6789999999988777665544  346799998864 33458899999999


Q ss_pred             EEEEECCCCC-CCceee---cccc--ccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccccccc
Q psy17342        143 IVLWDTRVQK-KTPVHR---TPLS--VMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQ  216 (401)
Q Consensus       143 v~iw~~~~~~-~~~~~~---~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  216 (401)
                      |+||+--... ..+..-   ..++  ..+..+.-.-+.|  .....+|++++.-..|++||.+...   ....++    .
T Consensus      1135 IRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dW--qQ~~G~Ll~tGd~r~IRIWDa~~E~---~~~diP----~ 1205 (1387)
T KOG1517|consen 1135 IRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDW--QQQSGHLLVTGDVRSIRIWDAHKEQ---VVADIP----Y 1205 (1387)
T ss_pred             EEEecccccccCCceeEEeeccccccCccCCCCCeeeeh--hhhCCeEEecCCeeEEEEEecccce---eEeecc----c
Confidence            9999754322 111110   0000  0111222244566  6666777777778899999997522   222222    2


Q ss_pred             CCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCC-CceeeecCCCCc--eeeeecCccCCCCCCCcEEEEEeCCCe
Q psy17342        217 TKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKA-GNVECYEGHEGP--VVGLSSHRAQGHIDFSHLYLTSSYDWS  293 (401)
Q Consensus       217 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-~~~~~~~~~~~~--v~~i~~~~~~~~~~~~~~l~s~~~d~~  293 (401)
                      +....|+++.-+...++.+++|..||.|++||.+.... ..+..++.|...  |..+.+.+..     -..|++|+.||.
T Consensus      1206 ~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G-----~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1206 GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG-----LGELVSGSQDGD 1280 (1387)
T ss_pred             CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC-----CcceeeeccCCe
Confidence            25567888877756689999999999999999885432 356677888887  9999998863     246999999999


Q ss_pred             EEEEEeeCCCceE--EEeecC--C-ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe----ecCCCCeEEE
Q psy17342        294 VKLWNIKENKPVH--SFNEFR--D-YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAI----VEGAPALSRV  364 (401)
Q Consensus       294 i~iwd~~~~~~~~--~~~~~~--~-~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~  364 (401)
                      |++||++......  ++..|.  + .++++..++..+ ++|+|+. +.|+||++.... +..++..    ......+.++
T Consensus      1281 I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~scL 1357 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSVSCL 1357 (1387)
T ss_pred             EEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhh-hcccccCcccccCcCCCccee
Confidence            9999998742222  222332  3 599999999998 8999987 899999997433 3333211    1123567999


Q ss_pred             EecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        365 TWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       365 ~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      +|+|..-.||+|+.|..|.||....+.
T Consensus      1358 ~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1358 AFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             eecchhHhhhhccCCceEEEeecCCcC
Confidence            999999999999999999999987764

>KOG1524|consensus

Probab=99.88  E-value=5.1e-21  Score=161.85  Aligned_cols=269  Identities=14%  Similarity=0.230  Sum_probs=188.5

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeC------CCCceEEEE
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAK------FNPYLILGG  137 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~l~~g  137 (401)
                      |.+.|.|+.|+.+...+.++.           |..+.+|.--+.............-.+.+..-|      .+...++.+
T Consensus        13 ~~e~vc~v~w~~~eei~~~~d-----------Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~   81 (737)
T KOG1524|consen   13 NSEKVCCVDWSSNEEIYFVSD-----------DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLIC   81 (737)
T ss_pred             cceeEEeecccccceEEEecc-----------CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEE
Confidence            456788999998886666655           666666654433333222222111112221111      122366777


Q ss_pred             ecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccC
Q psy17342        138 TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT  217 (401)
Q Consensus       138 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  217 (401)
                      +.||.+.+.+-...-.       .....|.+.+.+-.|  +++|.-|+++++||.|++|.-..  ....+       ...
T Consensus        82 s~DGkf~il~k~~rVE-------~sv~AH~~A~~~gRW--~~dGtgLlt~GEDG~iKiWSrsG--MLRSt-------l~Q  143 (737)
T KOG1524|consen   82 SNDGRFVILNKSARVE-------RSISAHAAAISSGRW--SPDGAGLLTAGEDGVIKIWSRSG--MLRST-------VVQ  143 (737)
T ss_pred             cCCceEEEecccchhh-------hhhhhhhhhhhhccc--CCCCceeeeecCCceEEEEeccc--hHHHH-------Hhh
Confidence            8899999987554322       235789999999999  99999999999999999998542  11111       112


Q ss_pred             CccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEE
Q psy17342        218 KNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLW  297 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iw  297 (401)
                      ...+|+|++|.|.+.+.+.+.+  +.+.+=.+..+.  .+..+++|.+-|.++.|+|.      ++++++|++|-+.+||
T Consensus       144 ~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~--k~i~WkAHDGiiL~~~W~~~------s~lI~sgGED~kfKvW  213 (737)
T KOG1524|consen  144 NEESIRCARWAPNSNSIVFCQG--GHISIKPLAANS--KIIRWRAHDGLVLSLSWSTQ------SNIIASGGEDFRFKIW  213 (737)
T ss_pred             cCceeEEEEECCCCCceEEecC--CeEEEeeccccc--ceeEEeccCcEEEEeecCcc------ccceeecCCceeEEee
Confidence            5568999999955555555444  455554444222  35678899999999999999      7999999999999999


Q ss_pred             EeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEe
Q psy17342        298 NIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGD  377 (401)
Q Consensus       298 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  377 (401)
                      |. .|+++.+-..|+.+|++++|+|+ . +++.++.. ++++              ..+..+.|..++||+||..+++|+
T Consensus       214 D~-~G~~Lf~S~~~ey~ITSva~npd-~-~~~v~S~n-t~R~--------------~~p~~GSifnlsWS~DGTQ~a~gt  275 (737)
T KOG1524|consen  214 DA-QGANLFTSAAEEYAITSVAFNPE-K-DYLLWSYN-TARF--------------SSPRVGSIFNLSWSADGTQATCGT  275 (737)
T ss_pred             cc-cCcccccCChhccceeeeeeccc-c-ceeeeeee-eeee--------------cCCCccceEEEEEcCCCceeeccc
Confidence            97 48888888889999999999999 3 67777643 4441              123356689999999999999999


Q ss_pred             cCCcEEEEEecc
Q psy17342        378 EKGAITMFDVGE  389 (401)
Q Consensus       378 ~dg~v~iw~~~~  389 (401)
                      ..|.+.+=.+-+
T Consensus       276 ~~G~v~~A~~ie  287 (737)
T KOG1524|consen  276 STGQLIVAYAIE  287 (737)
T ss_pred             cCceEEEeeeeh
Confidence            999876654433

>KOG1009|consensus

Probab=99.88  E-value=1.3e-20  Score=154.03  Aligned_cols=264  Identities=16%  Similarity=0.199  Sum_probs=186.7

Q ss_pred             EEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCc---eeeccccccCCCCcEEEEEEeecCCceEEEEEeCC
Q psy17342        114 EFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTP---VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND  190 (401)
Q Consensus       114 ~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d  190 (401)
                      ..+...+|.++.|.+...+.+++|+.|..|++|.++......   .......+..|...|+++.|  +|+|+.|++|+.+
T Consensus         9 ~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf--~p~gelLASg~D~   86 (434)
T KOG1009|consen    9 SWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRF--SPDGELLASGGDG   86 (434)
T ss_pred             EecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEE--cCCcCeeeecCCC
Confidence            344577999999999876699999999999999987654432   22222346789999999999  9999999999999


Q ss_pred             CcEEEeeccCCC-----CC----ccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec
Q psy17342        191 GRLCSWSLEMLS-----SP----QETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE  261 (401)
Q Consensus       191 g~i~~wd~~~~~-----~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~  261 (401)
                      |.+.+|......     .+    .+.... .....+|...|..++|+ +++..+++++.|..+++||..  .+.....+.
T Consensus        87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v-~k~lr~h~~diydL~Ws-~d~~~l~s~s~dns~~l~Dv~--~G~l~~~~~  162 (434)
T KOG1009|consen   87 GEVFLWKQGDVRIFDADTEADLNKEKWVV-KKVLRGHRDDIYDLAWS-PDSNFLVSGSVDNSVRLWDVH--AGQLLAILD  162 (434)
T ss_pred             ceEEEEEecCcCCccccchhhhCccceEE-EEEecccccchhhhhcc-CCCceeeeeeccceEEEEEec--cceeEeecc
Confidence            999999876200     00    000111 11145688999999999 899999999999999999998  445677888


Q ss_pred             CCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEe-------------------ecCC----ceEEE
Q psy17342        262 GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN-------------------EFRD----YVMDV  318 (401)
Q Consensus       262 ~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------------~~~~----~v~~v  318 (401)
                      .|...+..++|.|.      ++++++-+.|...+.+++...+.++...                   .|+.    -...+
T Consensus       163 dh~~yvqgvawDpl------~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl  236 (434)
T KOG1009|consen  163 DHEHYVQGVAWDPL------NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL  236 (434)
T ss_pred             ccccccceeecchh------hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence            99999999999998      6888888877766666554322111110                   0000    11223


Q ss_pred             EECCCCC---------------------------------------------------------------------cEEE
Q psy17342        319 QWSPINP---------------------------------------------------------------------ALFA  329 (401)
Q Consensus       319 ~~~~~~~---------------------------------------------------------------------~~l~  329 (401)
                      +|+|+|.                                                                     .++|
T Consensus       237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa  316 (434)
T KOG1009|consen  237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA  316 (434)
T ss_pred             ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence            3333332                                                                     1233


Q ss_pred             EEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCcc
Q psy17342        330 TVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGI  392 (401)
Q Consensus       330 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~  392 (401)
                      .++ .+.|.+||.++...+..  ...-|-..|+.++|++||..|+..+.||...+-.++..++
T Consensus       317 iAt-~~svyvydtq~~~P~~~--v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  317 IAT-KNSVYVYDTQTLEPLAV--VDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             Eee-cceEEEeccccccceEE--EeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence            333 34677777665443332  2234567899999999999999999999999888877654

>KOG1034|consensus

Probab=99.88  E-value=4.3e-21  Score=152.72  Aligned_cols=255  Identities=13%  Similarity=0.150  Sum_probs=187.6

Q ss_pred             ccccceEEEEecCC----CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEe
Q psy17342         63 SKNRNVTYMDWSTQ----HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGT  138 (401)
Q Consensus        63 ~~~~~v~~~~~~~~----~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~  138 (401)
                      .|.+....++|+-+    .+++|+++          .-|.|+|.|+.+++....+ .+|...|+.+.++|+.++++++++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G----------~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~~qlvls~S  155 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGG----------YLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDRPQLVLSAS  155 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeec----------ceeEEEEEecchhhhccce-eccCccchhhhcCCCCCcEEEEec
Confidence            36677888888754    44688888          5899999999987766544 567899999999999999999999


Q ss_pred             cCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCc-----------c-
Q psy17342        139 YSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQ-----------E-  206 (401)
Q Consensus       139 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-----------~-  206 (401)
                      .|..|++|++++.....+...   ..+|.+.|.++.|  +.++.+|++++.|.++++|++....-..           . 
T Consensus       156 kD~svRlwnI~~~~Cv~VfGG---~egHrdeVLSvD~--~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t  230 (385)
T KOG1034|consen  156 KDHSVRLWNIQTDVCVAVFGG---VEGHRDEVLSVDF--SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKT  230 (385)
T ss_pred             CCceEEEEeccCCeEEEEecc---cccccCcEEEEEE--cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCc
Confidence            999999999999987766543   4799999999999  9999999999999999999997321000           0 


Q ss_pred             -------cccccc-ccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCC------------CceeeecCCCCc
Q psy17342        207 -------TRDLQY-NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKA------------GNVECYEGHEGP  266 (401)
Q Consensus       207 -------~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~------------~~~~~~~~~~~~  266 (401)
                             ...++. .....|...|-|+.|-   ++++++-+-++.|..|..-....            ..+..+.-....
T Consensus       231 ~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~  307 (385)
T KOG1034|consen  231 TRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCD  307 (385)
T ss_pred             cCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccc
Confidence                   000000 0123366677777776   58888888899999997621000            112223333344


Q ss_pred             eeee--ecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceE--EEee--cCCceEEEEECCCCCcEEEEEecCCEEEEE
Q psy17342        267 VVGL--SSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVH--SFNE--FRDYVMDVQWSPINPALFATVEVAGRVDLW  340 (401)
Q Consensus       267 v~~i--~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~--~~~~v~~v~~~~~~~~~l~~~~~d~~i~iw  340 (401)
                      |.-+  +|.|.      .+.||.|...|.|.+||++...+..  ++..  ....|...+|+.++. +|+...+|++|.-|
T Consensus       308 iWfirf~~d~~------~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrw  380 (385)
T KOG1034|consen  308 IWFIRFAFDPW------QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRW  380 (385)
T ss_pred             eEEEEEeecHH------HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc-EEEEEeCCCcEEEE
Confidence            4444  44555      6899999999999999998876632  2222  245789999999997 77777889999999


Q ss_pred             eCC
Q psy17342        341 NLN  343 (401)
Q Consensus       341 d~~  343 (401)
                      |..
T Consensus       381 drv  383 (385)
T KOG1034|consen  381 DRV  383 (385)
T ss_pred             Eee
Confidence            864

>KOG0642|consensus

Probab=99.87  E-value=2.1e-21  Score=165.05  Aligned_cols=260  Identities=21%  Similarity=0.303  Sum_probs=184.6

Q ss_pred             cccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcC------CCCCceEEEe-cCCCeeEEEEeCCCCc
Q psy17342         60 EKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKF------KKTTPEFEFF-CQSPVLSCCFAKFNPY  132 (401)
Q Consensus        60 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~------~~~~~~~~~~-~~~~v~~~~~~~~~~~  132 (401)
                      ....|.+.|.+++|.|....|++++          .||.+++|+++.      ....+.+.+. |.++|.|+++.+.+ .
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~s----------ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~-~  357 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITAS----------EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG-E  357 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEec----------cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc-e
Confidence            3346889999999999999999999          899999999932      2334444444 89999999999966 7


Q ss_pred             eEEEEecCCeEEEEECCCCCCCc-ee---eccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccc
Q psy17342        133 LILGGTYSGQIVLWDTRVQKKTP-VH---RTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETR  208 (401)
Q Consensus       133 ~l~~g~~dg~v~iw~~~~~~~~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~  208 (401)
                      .+++|+.||+|+.|++....-.. ..   ...-.+.+|.+.|+.+++  ++....|++++.||+++.|+..... + .++
T Consensus       358 ~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~--s~~~~~Llscs~DgTvr~w~~~~~~-~-~~f  433 (577)
T KOG0642|consen  358 HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLAL--SSTKDRLLSCSSDGTVRLWEPTEES-P-CTF  433 (577)
T ss_pred             EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeee--cccccceeeecCCceEEeeccCCcC-c-ccc
Confidence            99999999999999775221100 00   001235799999999999  8888899999999999999986422 2 111


Q ss_pred             ccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC-------CCCceeeeecCccCCCCCC
Q psy17342        209 DLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG-------HEGPVVGLSSHRAQGHIDF  281 (401)
Q Consensus       209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~~~~  281 (401)
                      ....     ......++.+-..+....++...-+.--+++.....  .+..+..       ....+..+.++|.      
T Consensus       434 ~~~~-----e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s--~~~~~~s~~~~~~~~~~~in~vVs~~~------  500 (577)
T KOG0642|consen  434 GEPK-----EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVS--DLLIFESSASPGPRRYPQINKVVSHPT------  500 (577)
T ss_pred             CCcc-----ccCCcceEeeccchhHhhhhhcccccccchhhhhhh--heeeccccCCCcccccCccceEEecCC------
Confidence            1111     222345555541221222222222222233332111  1112211       1234677888888      


Q ss_pred             CcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCC
Q psy17342        282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV  348 (401)
Q Consensus       282 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  348 (401)
                      ..+.+++..|+.|+++|..++++++....|...++++++.|+|. +|++++.|+.+++|.+.....+
T Consensus       501 ~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  501 ADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDVKTCV  566 (577)
T ss_pred             CCeeEecccCCceecccccccccchheeeccceecceeecCCCc-eEEeecCCceeehhhccchhee
Confidence            68999999999999999999999999999999999999999998 8999999999999998765543

>KOG0642|consensus

Probab=99.87  E-value=2.9e-21  Score=164.20  Aligned_cols=258  Identities=16%  Similarity=0.212  Sum_probs=185.3

Q ss_pred             ecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCC--CceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcE
Q psy17342        116 FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKK--TPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRL  193 (401)
Q Consensus       116 ~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i  193 (401)
                      .|...|.+++|+|-. -.|++++.||.|++|+++....  .......+++.+|.++|.|+++  ++++..+++|+-||+|
T Consensus       292 s~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v--~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  292 SHDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVV--PSNGEHCYSGGIDGTI  368 (577)
T ss_pred             cchhhhhhhhcCCCC-CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEe--cCCceEEEeeccCcee
Confidence            367789999999955 6888999999999999943111  1122233678999999999999  9999999999999999


Q ss_pred             EEeeccCCCCCcccc---ccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC--CCCcee
Q psy17342        194 CSWSLEMLSSPQETR---DLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG--HEGPVV  268 (401)
Q Consensus       194 ~~wd~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~--~~~~v~  268 (401)
                      +.|++.....+....   .+.. .+.+|...|+.++++ .....|++++.||+++.|+......   .+|..  ..+--.
T Consensus       369 ~~w~~p~n~dp~ds~dp~vl~~-~l~Ghtdavw~l~~s-~~~~~Llscs~DgTvr~w~~~~~~~---~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  369 RCWNLPPNQDPDDSYDPSVLSG-TLLGHTDAVWLLALS-STKDRLLSCSSDGTVRLWEPTEESP---CTFGEPKEHGYPL  443 (577)
T ss_pred             eeeccCCCCCcccccCcchhcc-ceeccccceeeeeec-ccccceeeecCCceEEeeccCCcCc---cccCCccccCCcc
Confidence            999776333332222   1111 267899999999999 7888899999999999999875443   22322  122223


Q ss_pred             eeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee-------cCCceEEEEECCCCCcEEEEEecCCEEEEEe
Q psy17342        269 GLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE-------FRDYVMDVQWSPINPALFATVEVAGRVDLWN  341 (401)
Q Consensus       269 ~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd  341 (401)
                      ++.+-...     ....++...-+.-.++++.....+..+..       ....++.+.++|.++ +.+++..|+.|+++|
T Consensus       444 svd~~ss~-----~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~d  517 (577)
T KOG0642|consen  444 SVDRTSSR-----PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFD  517 (577)
T ss_pred             eEeeccch-----hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-eeEecccCCceeccc
Confidence            44444321     12222222233333444444444444332       123577899999997 889999999999999


Q ss_pred             CCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      ..++..+...   ..|...++++++.|+|.+|++++.||.|++|++...
T Consensus       518 n~~~~~l~s~---~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  518 NKTGKILHSM---VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             ccccccchhe---eeccceecceeecCCCceEEeecCCceeehhhccch
Confidence            9998876654   367788999999999999999999999999999765

>KOG0649|consensus

Probab=99.87  E-value=8.9e-20  Score=139.41  Aligned_cols=245  Identities=14%  Similarity=0.262  Sum_probs=171.7

Q ss_pred             CeeEEEEeCCCCceEEEEecCCeEEEEECCCCC---CCc-eeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEE
Q psy17342        120 PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQK---KTP-VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCS  195 (401)
Q Consensus       120 ~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~---~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~  195 (401)
                      .|.+-+|+|.+ ++|++|..+|.|.+..+.+..   ..+ -....+..++|.++|+.++|  .  ..+|++|+ ||.|+-
T Consensus        12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f--~--d~~Lls~g-dG~V~g   85 (325)
T KOG0649|consen   12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAF--H--DDFLLSGG-DGLVYG   85 (325)
T ss_pred             HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeee--e--hhheeecc-CceEEE
Confidence            45666889955 799999999999999986421   111 11122345899999999999  3  45667665 499999


Q ss_pred             eeccCCCCC---cccccccc--ccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeee
Q psy17342        196 WSLEMLSSP---QETRDLQY--NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGL  270 (401)
Q Consensus       196 wd~~~~~~~---~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i  270 (401)
                      |..+...+.   ....++..  ......-..|+++... |..+-++.++.|+.++.||++.  ++..+.+++|++.|.++
T Consensus        86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ld-P~enSi~~AgGD~~~y~~dlE~--G~i~r~~rGHtDYvH~v  162 (325)
T KOG0649|consen   86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLD-PSENSILFAGGDGVIYQVDLED--GRIQREYRGHTDYVHSV  162 (325)
T ss_pred             eeehhhhhhccchhhhhhcCccccCcccCCccceeEec-cCCCcEEEecCCeEEEEEEecC--CEEEEEEcCCcceeeee
Confidence            987643221   11111111  0011233468889998 4555555566899999999984  45678999999999999


Q ss_pred             ecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeec----------CCceEEEEECCCCCcEEEEEecCCEEEEE
Q psy17342        271 SSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEF----------RDYVMDVQWSPINPALFATVEVAGRVDLW  340 (401)
Q Consensus       271 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------~~~v~~v~~~~~~~~~l~~~~~d~~i~iw  340 (401)
                      .-...      ...+++|++||++|+||.++++.+.++...          ..+|-+++.+.+   .+++|+ ...+.+|
T Consensus       163 v~R~~------~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGg-Gp~lslw  232 (325)
T KOG0649|consen  163 VGRNA------NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGG-GPKLSLW  232 (325)
T ss_pred             eeccc------CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecC-CCceeEE
Confidence            87554      578999999999999999999998887642          234666666554   566554 5689999


Q ss_pred             eCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        341 NLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       341 d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      .+++.+....+..    ...+..+.|.  .+.+++++....|.-|.+..
T Consensus       233 hLrsse~t~vfpi----pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  233 HLRSSESTCVFPI----PARVHLVDFV--DDCVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             eccCCCceEEEec----ccceeEeeee--cceEEEeccccceeeeeecc
Confidence            9999886666543    4567778884  34567777677788887743

>KOG0644|consensus

Probab=99.87  E-value=1.4e-21  Score=173.20  Aligned_cols=287  Identities=17%  Similarity=0.261  Sum_probs=221.2

Q ss_pred             ccccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEe
Q psy17342         59 DEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGT  138 (401)
Q Consensus        59 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~  138 (401)
                      ....+|..+|.|+.|...|.++++++          .|..|+||..+++.+.... .+|.+.++.++.+..+ .++++++
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgs----------dd~lvKiwS~et~~~lAs~-rGhs~ditdlavs~~n-~~iaaaS  251 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGS----------DDRLVKIWSMETARCLASC-RGHSGDITDLAVSSNN-TMIAAAS  251 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecC----------ccceeeeeeccchhhhccC-CCCccccchhccchhh-hhhhhcc
Confidence            34556889999999999999999999          8999999999988777655 3578999999998854 6899999


Q ss_pred             cCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342        139 YSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       139 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      .|..|++|.+..+....      .+.+|++.|++++|  +|-.    +.+.||++++||.+-  .+.....-+.  ....
T Consensus       252 ~D~vIrvWrl~~~~pvs------vLrghtgavtaiaf--sP~~----sss~dgt~~~wd~r~--~~~~y~prp~--~~~~  315 (1113)
T KOG0644|consen  252 NDKVIRVWRLPDGAPVS------VLRGHTGAVTAIAF--SPRA----SSSDDGTCRIWDARL--EPRIYVPRPL--KFTE  315 (1113)
T ss_pred             cCceEEEEecCCCchHH------HHhccccceeeecc--Cccc----cCCCCCceEeccccc--cccccCCCCC--Cccc
Confidence            99999999999887653      25799999999999  6643    788999999999872  1111111111  1123


Q ss_pred             ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      ...+.++.|. ..+..+++++.|+.-..|....        +..+...+.-+..+.+.     ..+.+++-.+-.+++|+
T Consensus       316 ~~~~~s~~~~-~~~~~f~Tgs~d~ea~n~e~~~--------l~~~~~~lif~t~ssd~-----~~~~~~ar~~~~~~vwn  381 (1113)
T KOG0644|consen  316 KDLVDSILFE-NNGDRFLTGSRDGEARNHEFEQ--------LAWRSNLLIFVTRSSDL-----SSIVVTARNDHRLCVWN  381 (1113)
T ss_pred             ccceeeeecc-ccccccccccCCcccccchhhH--------hhhhccceEEEeccccc-----cccceeeeeeeEeeeee
Confidence            3456667776 7788899999998877775531        11222222222222121     35666777788999999


Q ss_pred             eeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEec
Q psy17342        299 IKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDE  378 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  378 (401)
                      +.++...+.+.+|...+..+.++|-++.+..+++.||...|||+-.+..+..+.  .+ +..+..-+||+||..++....
T Consensus       382 l~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~--~g-h~kl~d~kFSqdgts~~lsd~  458 (1113)
T KOG0644|consen  382 LYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF--IG-HGKLVDGKFSQDGTSIALSDD  458 (1113)
T ss_pred             cccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee--cc-cceeeccccCCCCceEecCCC
Confidence            999999999999999999999999998788899999999999999888776654  23 566778899999999999998


Q ss_pred             CCcEEEEEeccC
Q psy17342        379 KGAITMFDVGEV  390 (401)
Q Consensus       379 dg~v~iw~~~~~  390 (401)
                      -|.++|.....+
T Consensus       459 hgql~i~g~gqs  470 (1113)
T KOG0644|consen  459 HGQLYILGTGQS  470 (1113)
T ss_pred             CCceEEeccCCC
Confidence            899999876554

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.86  E-value=1.6e-18  Score=150.98  Aligned_cols=256  Identities=9%  Similarity=0.021  Sum_probs=161.5

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcC-CCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKF-KKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIV  144 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~  144 (401)
                      +....++++|++++|++++.         .++.|.+|+++. +................++|+|+++.++++...++.|.
T Consensus        35 ~~~~~l~~spd~~~lyv~~~---------~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~  105 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVR---------PEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVS  105 (330)
T ss_pred             CCCccEEECCCCCEEEEEEC---------CCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEE
Confidence            44677899999999988873         578999999973 32221112223346778999998855555555589999


Q ss_pred             EEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEE-eCCCcEEEeeccCCCCCccccccccccccCCccceE
Q psy17342        145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISI-SNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL  223 (401)
Q Consensus       145 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (401)
                      +|+++........   .....+......+++  +|++++++++ ..++.|.+||+...+..........  .........
T Consensus       106 v~~~~~~g~~~~~---~~~~~~~~~~~~~~~--~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~--~~~~g~~p~  178 (330)
T PRK11028        106 VSPLDKDGIPVAP---IQIIEGLEGCHSANI--DPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEV--TTVEGAGPR  178 (330)
T ss_pred             EEEECCCCCCCCc---eeeccCCCcccEeEe--CCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCce--ecCCCCCCc
Confidence            9999743211100   111122334567778  8898887655 4568999999975332211000000  001223467


Q ss_pred             EEEeccCCCCeEEEEcC-CceEEEEeCCCC--CCCceeeecCC------CCceeeeecCccCCCCCCCcEEEEEeC-CCe
Q psy17342        224 SLAFPQNDVNNFVVGCE-DGNVYSACRHGN--KAGNVECYEGH------EGPVVGLSSHRAQGHIDFSHLYLTSSY-DWS  293 (401)
Q Consensus       224 ~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~--~~~~~~~~~~~------~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~~  293 (401)
                      .++|+ +++++++++.. ++.|.+|++...  ....+..+..+      ......+.++|+      +++++++.. ++.
T Consensus       179 ~~~~~-pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd------g~~lyv~~~~~~~  251 (330)
T PRK11028        179 HMVFH-PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD------GRHLYACDRTASL  251 (330)
T ss_pred             eEEEC-CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC------CCEEEEecCCCCe
Confidence            89999 89999888776 899999998742  21222232211      112235788998      677777754 789


Q ss_pred             EEEEEeeCCCceEEEeec---CCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        294 VKLWNIKENKPVHSFNEF---RDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       294 i~iwd~~~~~~~~~~~~~---~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      |.+|++.......++..+   ......++++|+|+.++++...++.|.+|++..
T Consensus       252 I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        252 ISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             EEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            999999654322222222   124568999999996666666689999998853

>KOG1587|consensus

Probab=99.86  E-value=2.6e-19  Score=159.62  Aligned_cols=260  Identities=17%  Similarity=0.231  Sum_probs=188.4

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCc-----eEEEecCCCeeEEEEeCCCC-ceEEEEe
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTP-----EFEFFCQSPVLSCCFAKFNP-YLILGGT  138 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~-~~l~~g~  138 (401)
                      ...|.|+.|+|..+.+++||.         .+|.|.+||+..+...+     .....|..+++.+.|-.+.. .-+++++
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~---------y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s  312 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGC---------YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS  312 (555)
T ss_pred             CCceeEEEeccCCcceEEeec---------cCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe
Confidence            478999999999988888884         79999999998755521     22234788999999976432 3477888


Q ss_pred             cCCeEEEEECCCCCCCceeecccccc-------CCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCc-ccccc
Q psy17342        139 YSGQIVLWDTRVQKKTPVHRTPLSVM-------AHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQ-ETRDL  210 (401)
Q Consensus       139 ~dg~v~iw~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~  210 (401)
                      .||.|..|+++.-.. +.........       .-...+++++|. ..+...|+.|+++|.|.--.-....... ...+.
T Consensus       313 sDG~i~~W~~~~l~~-P~e~~~~~~~~~~~~~~~~~~~~t~~~F~-~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~  390 (555)
T KOG1587|consen  313 SDGSICSWDTDMLSL-PVEGLLLESKKHKGQQSSKAVGATSLKFE-PTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKG  390 (555)
T ss_pred             cCCcEeeeecccccc-chhhcccccccccccccccccceeeEeec-cCCCceEEEEcCCcEEEEEeccCCcccccccccc
Confidence            899999998765332 1111111111       223467888884 3456689999999988773332211111 11111


Q ss_pred             ccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC
Q psy17342        211 QYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY  290 (401)
Q Consensus       211 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~  290 (401)
                      . .....|..+|+++.++|-....+++++ |-.+++|...... .++..+..+...+++++|+|..     ...|+++..
T Consensus       391 ~-~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~-~Pl~~~~~~~~~v~~vaWSptr-----pavF~~~d~  462 (555)
T KOG1587|consen  391 H-STFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA-SPLLSLDSSPDYVTDVAWSPTR-----PAVFATVDG  462 (555)
T ss_pred             c-ccccccCcceEeeecCCCccceeeeec-cceeEeccccCCC-CcchhhhhccceeeeeEEcCcC-----ceEEEEEcC
Confidence            1 014458899999999976666677766 9999999876322 3566777788889999999997     789999999


Q ss_pred             CCeEEEEEeeC--CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        291 DWSVKLWNIKE--NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       291 d~~i~iwd~~~--~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      ||.|.+||+..  ..++.+...+....+.+.|++.|+ ++++|...|++.+|++..
T Consensus       463 ~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  463 DGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILKLSE  517 (555)
T ss_pred             CCceehhhhhccccCCcccccccccccceeecCCCCc-EEEEecCCCcEEEEEcCc
Confidence            99999999965  456666666667788899999997 899999999999999964

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=5.1e-18  Score=154.08  Aligned_cols=291  Identities=22%  Similarity=0.375  Sum_probs=215.8

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCC-CCceEEEecCCCeeEEEE-eCCCCceEEE-Eec
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK-TTPEFEFFCQSPVLSCCF-AKFNPYLILG-GTY  139 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~-~~~~~~~l~~-g~~  139 (401)
                      .|...+.++.|.+.+..++.++          .++.+.+|+..... ....+...+...+..+.+ ++++..+++. +..
T Consensus        63 ~~~~~i~~~~~~~~~~~~~~~~----------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (466)
T COG2319          63 GHEDSITSIAFSPDGELLLSGS----------SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSL  132 (466)
T ss_pred             eccceEEEEEECCCCcEEEEec----------CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCC
Confidence            5678899999999999998888          69999999998665 333333222236777777 7766534444 444


Q ss_pred             CCeEEEEECCC-CCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-CCcEEEeeccCCCCCccccccccccccC
Q psy17342        140 SGQIVLWDTRV-QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-DGRLCSWSLEMLSSPQETRDLQYNNKQT  217 (401)
Q Consensus       140 dg~v~iw~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~  217 (401)
                      ++.+.+|+... ....      ..+..|...|..++|  ++++..+++++. |+.+++|++.. ......       ...
T Consensus       133 d~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~  196 (466)
T COG2319         133 DGTVKLWDLSTPGKLI------RTLEGHSESVTSLAF--SPDGKLLASGSSLDGTIKLWDLRT-GKPLST-------LAG  196 (466)
T ss_pred             CccEEEEEecCCCeEE------EEEecCcccEEEEEE--CCCCCEEEecCCCCCceEEEEcCC-CceEEe-------ecc
Confidence            89999999987 2221      235789999999999  889988888886 99999999975 111111       233


Q ss_pred             CccceEEEEeccCCCC-eEEEEcCCceEEEEeCCCCCCCcee-eecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEE
Q psy17342        218 KNLAVLSLAFPQNDVN-NFVVGCEDGNVYSACRHGNKAGNVE-CYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVK  295 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~  295 (401)
                      |...+.+++|+ +++. .+++++.|+.|++||..  ...... .+.+|.... ...|+|.      +.++++++.|+.++
T Consensus       197 ~~~~v~~~~~~-~~~~~~~~~~~~d~~i~~wd~~--~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~d~~~~  266 (466)
T COG2319         197 HTDPVSSLAFS-PDGGLLIASGSSDGTIRLWDLS--TGKLLRSTLSGHSDSV-VSSFSPD------GSLLASGSSDGTIR  266 (466)
T ss_pred             CCCceEEEEEc-CCcceEEEEecCCCcEEEEECC--CCcEEeeecCCCCcce-eEeECCC------CCEEEEecCCCcEE
Confidence            78899999999 7776 55555999999999776  333455 577787775 3378887      57888999999999


Q ss_pred             EEEeeCCCc-eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEE
Q psy17342        296 LWNIKENKP-VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLC  374 (401)
Q Consensus       296 iwd~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  374 (401)
                      +|+++.... +..+..|...+.++.|+|++. .+++++.|+.+++||........... ...+...+..+.|.+++..++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  344 (466)
T COG2319         267 LWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSLSFSPDGSLLV  344 (466)
T ss_pred             EeeecCCCcEEEEEecCCccEEEEEECCCCC-EEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEEEECCCCCEEE
Confidence            999987665 455567888999999999776 55668888899999888766444433 224555688999943435565


Q ss_pred             EE-ecCCcEEEEEeccCc
Q psy17342        375 VG-DEKGAITMFDVGEVG  391 (401)
Q Consensus       375 ~~-~~dg~v~iw~~~~~~  391 (401)
                      .+ ..|+.+.+|++....
T Consensus       345 ~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         345 SGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             EeecCCCcEEeeecCCCc
Confidence            55 678899999998864

>KOG0322|consensus

Probab=99.85  E-value=5.9e-20  Score=142.00  Aligned_cols=282  Identities=17%  Similarity=0.241  Sum_probs=188.9

Q ss_pred             hhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEE
Q psy17342          5 EAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLAS   84 (401)
Q Consensus         5 ~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   84 (401)
                      .+.+++.+|...|.+.+|++..+...+.+.                           .-+...|+.+.--|++ .|.+-+
T Consensus        23 qa~~rL~sg~~~G~V~~w~lqt~r~~~~~r---------------------------~~g~~~it~lq~~p~d-~l~tqg   74 (323)
T KOG0322|consen   23 QANERLMSGLSVGIVKMWVLQTERDLPLIR---------------------------LFGRLFITNLQSIPND-SLDTQG   74 (323)
T ss_pred             ccchhhhcccccceEEEEEeecCccchhhh---------------------------hhccceeeceeecCCc-chhhcC
Confidence            467889999999999999998888554441                           0123568888888874 667677


Q ss_pred             eccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC-eEEEEECCCC---------CCC
Q psy17342         85 YHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG-QIVLWDTRVQ---------KKT  154 (401)
Q Consensus        85 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg-~v~iw~~~~~---------~~~  154 (401)
                                .|..+.+|++.....    ...|.-.++++-|.+..   +...+... .+-.++-+..         ...
T Consensus        75 ----------Rd~~L~lw~ia~s~~----i~i~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~t  137 (323)
T KOG0322|consen   75 ----------RDPLLILWTIAYSAF----ISIHSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTT  137 (323)
T ss_pred             ----------CCceEEEEEccCcce----EEEeeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccc
Confidence                      799999999985332    22334455666665422   22221111 1112211111         111


Q ss_pred             ceeeccccccCCCCcEEEEEEeecCCc--eEEEEEeCCCcEEEeeccCCCCCccc----cccccccccCCccceEEEEec
Q psy17342        155 PVHRTPLSVMAHTHPVFCMSVIGTQNA--HNLISISNDGRLCSWSLEMLSSPQET----RDLQYNNKQTKNLAVLSLAFP  228 (401)
Q Consensus       155 ~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg~i~~wd~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~  228 (401)
                      .+.-..-.-....+.+.+..+. ..++  -++++|-++|.+.+||+.........    ....  ....|..+|.++.|.
T Consensus       138 qv~i~dd~~~~Klgsvmc~~~~-~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~--~~ash~qpvlsldya  214 (323)
T KOG0322|consen  138 QVQIADDSERSKLGSVMCQDKD-HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVES--PNASHKQPVLSLDYA  214 (323)
T ss_pred             eeEccCchhccccCceeeeecc-ccccceEEEEEeccCCeEEEEEccCCceeecccccccccc--chhhccCcceeeeec
Confidence            1110011123455677777752 2222  35678889999999999863211111    1111  135588999999999


Q ss_pred             cCCCCeEEEEcCCceEEEEeCCCCCCCc--eeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceE
Q psy17342        229 QNDVNNFVVGCEDGNVYSACRHGNKAGN--VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVH  306 (401)
Q Consensus       229 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  306 (401)
                       +....=++|+.+..+..|+++.....+  .....-..-.|..+.+-|+      ++.+||++.|++||||+.++.+++.
T Consensus       215 -s~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD------~KIlATAGWD~RiRVyswrtl~pLA  287 (323)
T KOG0322|consen  215 -SSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPD------GKILATAGWDHRIRVYSWRTLNPLA  287 (323)
T ss_pred             -hhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccC------CcEEeecccCCcEEEEEeccCCchh
Confidence             666677788888889999876543221  1112222345778888998      7999999999999999999999999


Q ss_pred             EEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeC
Q psy17342        307 SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNL  342 (401)
Q Consensus       307 ~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~  342 (401)
                      .++.|...|++++|+|+.+ ++|+++.|++|.+|++
T Consensus       288 VLkyHsagvn~vAfspd~~-lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  288 VLKYHSAGVNAVAFSPDCE-LMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhhhcceeEEEeCCCCc-hhhhccCCceEEeeec
Confidence            9999999999999999986 8999999999999986

>KOG1009|consensus

Probab=99.85  E-value=1.5e-19  Score=147.87  Aligned_cols=295  Identities=13%  Similarity=0.153  Sum_probs=199.9

Q ss_pred             cccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEeccC
Q psy17342          9 SQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRN   88 (401)
Q Consensus         9 ~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~   88 (401)
                      .++||+.|..||+|-++....               ......+...    ...-.|.++|+++.|+|+|..|++|+    
T Consensus        28 ~laT~G~D~~iriW~v~r~~~---------------~~~~~~V~y~----s~Ls~H~~aVN~vRf~p~gelLASg~----   84 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEP---------------GGGDMKVEYL----SSLSRHTRAVNVVRFSPDGELLASGG----   84 (434)
T ss_pred             ceecccCccceeeeeeeecCC---------------CCCceeEEEe----ecccCCcceeEEEEEcCCcCeeeecC----
Confidence            899999999999997765441               0001112211    11223779999999999999999999    


Q ss_pred             CCCCCCCCcEEEEEeCc--------C-----C--CCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCC
Q psy17342         89 KEAPNEPDGVCLIWNTK--------F-----K--KTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKK  153 (401)
Q Consensus        89 ~~~~~~~d~~v~iwd~~--------~-----~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~  153 (401)
                            .+|.|.+|...        +     .  -.+......|...|+.++|+|++ .++++|+.|+.+++||+..+..
T Consensus        85 ------D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l  157 (434)
T KOG1009|consen   85 ------DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQL  157 (434)
T ss_pred             ------CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEecccee
Confidence                  89999999876        2     0  01112233478899999999987 8999999999999999999886


Q ss_pred             CceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcc-----------------cccccccccc
Q psy17342        154 TPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQE-----------------TRDLQYNNKQ  216 (401)
Q Consensus       154 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-----------------~~~~~~~~~~  216 (401)
                      ..      .+..|...+..++|  .|.+.++++-+.|...+.+.+........                 ...+..  ..
T Consensus       158 ~~------~~~dh~~yvqgvaw--Dpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfh--De  227 (434)
T KOG1009|consen  158 LA------ILDDHEHYVQGVAW--DPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFH--DE  227 (434)
T ss_pred             Ee------eccccccccceeec--chhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeee--cC
Confidence            53      35789999999999  89999999999888776666543111100                 001100  00


Q ss_pred             CCccceEEEEeccCCCCeEEEEcC----C-----ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCC---------
Q psy17342        217 TKNLAVLSLAFPQNDVNNFVVGCE----D-----GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGH---------  278 (401)
Q Consensus       217 ~~~~~v~~~~~~~~~~~~l~~~~~----d-----~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~---------  278 (401)
                      .-..-...++|+ |++..+++...    .     +..++++.... .++...+.+-..+...+.++|-...         
T Consensus       228 TlksFFrRlsfT-PdG~llvtPag~~~~g~~~~~n~tYvfsrk~l-~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~  305 (434)
T KOG1009|consen  228 TLKSFFRRLSFT-PDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL-KRPAARLPSPKKPALAVRFSPVYYELRPLSSEKF  305 (434)
T ss_pred             chhhhhhhcccC-CCCcEEEcccceeeeCCceeeceeEeeccccc-cCceeecCCCCcceEEEEeeeeEEEecccccccc
Confidence            111223456788 78888876532    1     22355654422 2344555555666666666653211         


Q ss_pred             ---CCCCcEEEEEeCCCeEEEEEeeCCCceEEEee-cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC
Q psy17342        279 ---IDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE-FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE  347 (401)
Q Consensus       279 ---~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  347 (401)
                         .-++-.++.+. ...|.|||.++..++..... |-..++.++|+++|. .++..+.||...+--+...++
T Consensus       306 ~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~-~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  306 LFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGS-VLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             ccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCc-EEEEeccCCceEEEEEcchhc
Confidence               01133455555 56899999998888877654 888999999999997 677788899888777665443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=1.4e-17  Score=151.21  Aligned_cols=286  Identities=22%  Similarity=0.364  Sum_probs=203.3

Q ss_pred             ceEEEEe-cCCCCCeEEE-EeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEec-CCeE
Q psy17342         67 NVTYMDW-STQHPELLLA-SYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTY-SGQI  143 (401)
Q Consensus        67 ~v~~~~~-~~~~~~l~~~-~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~-dg~v  143 (401)
                      .+..+.+ ++++..++.. +         ..++.+.+|+.............|...|..++|+|++. .+++++. ++.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~---------~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~  180 (466)
T COG2319         111 SVSKLALSSPDGNSILLASS---------SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTI  180 (466)
T ss_pred             ceeeEEEECCCcceEEeccC---------CCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCce
Confidence            4566666 7887733333 4         24899999999862233344455788999999999874 7777765 9999


Q ss_pred             EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCce-EEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAH-NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      ++|+.......      ..+..|...|.+++|  .+++. .+++++.|+.+++||..... .... .     ...|....
T Consensus       181 ~~~~~~~~~~~------~~~~~~~~~v~~~~~--~~~~~~~~~~~~~d~~i~~wd~~~~~-~~~~-~-----~~~~~~~~  245 (466)
T COG2319         181 KLWDLRTGKPL------STLAGHTDPVSSLAF--SPDGGLLIASGSSDGTIRLWDLSTGK-LLRS-T-----LSGHSDSV  245 (466)
T ss_pred             EEEEcCCCceE------EeeccCCCceEEEEE--cCCcceEEEEecCCCcEEEEECCCCc-EEee-e-----cCCCCcce
Confidence            99999874432      224569999999999  68887 55556999999999776211 1110 1     22344443


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN  302 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  302 (401)
                       ...|+ +++..+++++.++.+++|+...... ....+.+|...+.++.+.|.      +..+++++.|+.+.+||....
T Consensus       246 -~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~  316 (466)
T COG2319         246 -VSSFS-PDGSLLASGSSDGTIRLWDLRSSSS-LLRTLSGHSSSVLSVAFSPD------GKLLASGSSDGTVRLWDLETG  316 (466)
T ss_pred             -eEeEC-CCCCEEEEecCCCcEEEeeecCCCc-EEEEEecCCccEEEEEECCC------CCEEEEeeCCCcEEEEEcCCC
Confidence             22788 6668888999999999999985543 23344678899999999996      577777888989999999887


Q ss_pred             CceEEEe--ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEE-EecC
Q psy17342        303 KPVHSFN--EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCV-GDEK  379 (401)
Q Consensus       303 ~~~~~~~--~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~d  379 (401)
                      .......  .|...+..+.|.+++..+...+..|+.+.+|++....  ....  ......+..+.+++ ...++. +..+
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~  391 (466)
T COG2319         317 KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK--PLKT--LEGHSNVLSVSFSP-DGRVVSSGSTD  391 (466)
T ss_pred             ceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc--eeEE--ecCCceEEEEEECC-CCCEEEEecCC
Confidence            7666665  7777899999943324344444678999999998766  1111  12222288899998 544444 6889


Q ss_pred             CcEEEEEeccCc
Q psy17342        380 GAITMFDVGEVG  391 (401)
Q Consensus       380 g~v~iw~~~~~~  391 (401)
                      +.+.+|+.....
T Consensus       392 ~~~~~~~~~~~~  403 (466)
T COG2319         392 GTVRLWDLSTGS  403 (466)
T ss_pred             CceEEEecccCe
Confidence            999999998864

>KOG0303|consensus

Probab=99.84  E-value=2.3e-19  Score=146.30  Aligned_cols=216  Identities=15%  Similarity=0.153  Sum_probs=167.6

Q ss_pred             ccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCc
Q psy17342        163 VMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG  242 (401)
Q Consensus       163 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  242 (401)
                      +.+|+++|..++|.+ .+...|++||+|.+|.+|++..........+ +...+.+|...|..++|+|.-.+.|++++.|.
T Consensus        77 v~GHt~~vLDi~w~P-fnD~vIASgSeD~~v~vW~IPe~~l~~~lte-pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCP-FNDCVIASGSEDTKVMVWQIPENGLTRDLTE-PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             ccCccccccccccCc-cCCceeecCCCCceEEEEECCCcccccCccc-ceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            579999999999953 3456799999999999999965332221111 11115679999999999988889999999999


Q ss_pred             eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCc-eEEEEEC
Q psy17342        243 NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDY-VMDVQWS  321 (401)
Q Consensus       243 ~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~v~~~  321 (401)
                      .|.+|+....  ..+.++. |...|++++|+.+      +.+|++.+.|++|||||.++++.+.+-.+|.+. -..+.|-
T Consensus       155 ~v~iWnv~tg--eali~l~-hpd~i~S~sfn~d------Gs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl  225 (472)
T KOG0303|consen  155 TVSIWNVGTG--EALITLD-HPDMVYSMSFNRD------GSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFL  225 (472)
T ss_pred             eEEEEeccCC--ceeeecC-CCCeEEEEEeccC------CceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEe
Confidence            9999999844  3455666 9999999999998      899999999999999999999999988777763 4467788


Q ss_pred             CCCCcEEEEEe---cCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEE-EEecCCcEEEEEeccCc
Q psy17342        322 PINPALFATVE---VAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLC-VGDEKGAITMFDVGEVG  391 (401)
Q Consensus       322 ~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~dg~v~iw~~~~~~  391 (401)
                      .++. ++.+|-   .+.++-+||..+-... ...........|.---|.+|...++ +|-.|+.|+-|.+.+..
T Consensus       226 ~~g~-i~tTGfsr~seRq~aLwdp~nl~eP-~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  226 ASGK-IFTTGFSRMSERQIALWDPNNLEEP-IALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             ccCc-eeeeccccccccceeccCcccccCc-ceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            8886 555543   4678999998765543 3333345566777667788877765 55679999999998865

>KOG1963|consensus

Probab=99.84  E-value=9.2e-18  Score=150.40  Aligned_cols=301  Identities=16%  Similarity=0.213  Sum_probs=206.6

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcC--CCCCceEEEe-cCCCeeEEEEeCCCCceEEEEecC
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKF--KKTTPEFEFF-CQSPVLSCCFAKFNPYLILGGTYS  140 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~--~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~d  140 (401)
                      |.-.++|.++||++++++++.          .||.|.+|.--.  +.......++ |...|.+++|+++| .+|++|+..
T Consensus       204 Htf~~t~~~~spn~~~~Aa~d----------~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E  272 (792)
T KOG1963|consen  204 HTFNITCVALSPNERYLAAGD----------SDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGRE  272 (792)
T ss_pred             hcccceeEEeccccceEEEec----------cCCcEEEEeccccccccccceEEEecccccceeEEecCC-ceEeecccc
Confidence            556689999999999999998          799999997543  2222223344 78899999999988 688899999


Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccc--c-cccC
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY--N-NKQT  217 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--~-~~~~  217 (401)
                      |.+.+|.+.++....       +..-.++|..+.+  +|++++.+....|..|.+............--+..  + ....
T Consensus       273 ~VLv~Wq~~T~~kqf-------LPRLgs~I~~i~v--S~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~  343 (792)
T KOG1963|consen  273 GVLVLWQLETGKKQF-------LPRLGSPILHIVV--SPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTR  343 (792)
T ss_pred             eEEEEEeecCCCccc-------ccccCCeeEEEEE--cCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccc
Confidence            999999999887432       2456789999999  89999999999999999987744221111111110  0 0111


Q ss_pred             CccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec-----------CCCCceeeeecCccCCCCCCCcEEE
Q psy17342        218 KNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE-----------GHEGPVVGLSSHRAQGHIDFSHLYL  286 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~-----------~~~~~v~~i~~~~~~~~~~~~~~l~  286 (401)
                      ...-.+.++++ |..+.++..+..|.|.+||+.....  +..+.           .+.-.++.++.+..      +.+++
T Consensus       344 ~~~l~t~~~id-pr~~~~vln~~~g~vQ~ydl~td~~--i~~~~v~~~n~~~~~~n~~v~itav~~~~~------gs~ma  414 (792)
T KOG1963|consen  344 PQSLTTGVSID-PRTNSLVLNGHPGHVQFYDLYTDST--IYKLQVCDENYSDGDVNIQVGITAVARSRF------GSWMA  414 (792)
T ss_pred             ccccceeEEEc-CCCCceeecCCCceEEEEeccccce--eeeEEEEeecccCCcceeEEeeeeehhhcc------ceEEE
Confidence            23455678888 6778888899999999999875432  23322           12234566666655      78888


Q ss_pred             EEeC--------C--CeEEEEEeeCCCceEEE-----eecCCceEEEEECCCCCc-EEEEEecCCEEEEEeCCCCCCC--
Q psy17342        287 TSSY--------D--WSVKLWNIKENKPVHSF-----NEFRDYVMDVQWSPINPA-LFATVEVAGRVDLWNLNLDTEV--  348 (401)
Q Consensus       287 s~~~--------d--~~i~iwd~~~~~~~~~~-----~~~~~~v~~v~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~--  348 (401)
                      |.-.        |  -.+++|-......-..+     ..|...+...++.+.-+. .+++++.||.++||-+...+..  
T Consensus       415 T~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k  494 (792)
T KOG1963|consen  415 TLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYK  494 (792)
T ss_pred             EeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCc
Confidence            8642        3  35788987654433332     247666665555544333 7899999999999998543332  


Q ss_pred             ----cceEE-eecCCCCeEEEEecCCCcEEEEEecCCcEEEEEecc-Cccce
Q psy17342        349 ----PATSA-IVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE-VGIAC  394 (401)
Q Consensus       349 ----~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~-~~~~~  394 (401)
                          ..+.. ..-|..+++.++|+.||..|+ .+.|++|.+||..+ .++.+
T Consensus       495 ~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~  545 (792)
T KOG1963|consen  495 KSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLC  545 (792)
T ss_pred             CccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhc
Confidence                11111 112567899999999997665 45567899999988 44443

>KOG0649|consensus

Probab=99.83  E-value=1.1e-17  Score=128.06  Aligned_cols=277  Identities=16%  Similarity=0.159  Sum_probs=189.7

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcC---------CCCCceEEEecCCCeeEEEEeCCCCceEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKF---------KKTTPEFEFFCQSPVLSCCFAKFNPYLILG  136 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  136 (401)
                      ..|.+-+++|.+++|+++.          .+|.|.+..+++         ++........|.++++.++|..   .+|++
T Consensus        11 ~tvf~qa~sp~~~~l~agn----------~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls   77 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGN----------LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLS   77 (325)
T ss_pred             HHHHHHhhCCcceEEEEec----------CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheee
Confidence            4477778999999999998          799999999864         1211111245889999999973   56767


Q ss_pred             EecCCeEEEEECCCCCCC----ce--eeccccc-cCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccc
Q psy17342        137 GTYSGQIVLWDTRVQKKT----PV--HRTPLSV-MAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRD  209 (401)
Q Consensus       137 g~~dg~v~iw~~~~~~~~----~~--~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~  209 (401)
                      |+ ||.|+-|..+.....    +.  ...|... ...-..|+++..  .|..+.++.++.|+.+.-||++++.   -.+.
T Consensus        78 ~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~l--dP~enSi~~AgGD~~~y~~dlE~G~---i~r~  151 (325)
T KOG0649|consen   78 GG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWL--DPSENSILFAGGDGVIYQVDLEDGR---IQRE  151 (325)
T ss_pred             cc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEe--ccCCCcEEEecCCeEEEEEEecCCE---EEEE
Confidence            64 699999988754321    11  1111111 122346788887  6777777778899999999998632   2222


Q ss_pred             cccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec---------CCC-CceeeeecCccCCCC
Q psy17342        210 LQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE---------GHE-GPVVGLSSHRAQGHI  279 (401)
Q Consensus       210 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~---------~~~-~~v~~i~~~~~~~~~  279 (401)
                           +.+|+..+.++.-- .....+++|++||.+++||.+..+  .+..+.         .|- ..|.+++.+      
T Consensus       152 -----~rGHtDYvH~vv~R-~~~~qilsG~EDGtvRvWd~kt~k--~v~~ie~yk~~~~lRp~~g~wigala~~------  217 (325)
T KOG0649|consen  152 -----YRGHTDYVHSVVGR-NANGQILSGAEDGTVRVWDTKTQK--HVSMIEPYKNPNLLRPDWGKWIGALAVN------  217 (325)
T ss_pred             -----EcCCcceeeeeeec-ccCcceeecCCCccEEEEeccccc--eeEEeccccChhhcCcccCceeEEEecc------
Confidence                 45699999999886 667789999999999999998543  344333         222 236666665      


Q ss_pred             CCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCC
Q psy17342        280 DFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAP  359 (401)
Q Consensus       280 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  359 (401)
                        ..++++|+ ...+.+|.++..++...|.. ...+..+.|..+   .+++++..+.+.-|.+..- ....  . ...+.
T Consensus       218 --edWlvCGg-Gp~lslwhLrsse~t~vfpi-pa~v~~v~F~~d---~vl~~G~g~~v~~~~l~Gv-l~a~--i-p~~s~  286 (325)
T KOG0649|consen  218 --EDWLVCGG-GPKLSLWHLRSSESTCVFPI-PARVHLVDFVDD---CVLIGGEGNHVQSYTLNGV-LQAN--I-PVEST  286 (325)
T ss_pred             --CceEEecC-CCceeEEeccCCCceEEEec-ccceeEeeeecc---eEEEeccccceeeeeeccE-EEEe--c-cCCcc
Confidence              46887776 67899999999999988886 678889999876   4667777888999987631 1111  1 12234


Q ss_pred             CeEEEEecCCC-cEEEEEecCCcEEEEE
Q psy17342        360 ALSRVTWTPNG-TQLCVGDEKGAITMFD  386 (401)
Q Consensus       360 ~v~~~~~s~~g-~~l~~~~~dg~v~iw~  386 (401)
                      ..++..|+..- ++|-.++....+.|+.
T Consensus       287 ~c~s~s~~~~p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  287 ACYSASWQTSPIKFISIAGFSNKLHILK  314 (325)
T ss_pred             ceeeecccCCceEEEEecccceeeeeee
Confidence            45566665443 5555666666777663

>KOG2110|consensus

Probab=99.83  E-value=5.2e-17  Score=131.76  Aligned_cols=282  Identities=12%  Similarity=0.166  Sum_probs=193.2

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC--CeE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS--GQI  143 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d--g~v  143 (401)
                      ..+..+.|+.+...|..|+          .|| -++|+.+....... .......|..+-|+.   .++|..+.+  ..+
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs----------~~G-yk~~~~~~~~k~~~-~~~~~~~IvEmLFSS---SLvaiV~~~qpr~L   70 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGS----------KDG-YKIFSCSPFEKCFS-KDTEGVSIVEMLFSS---SLVAIVSIKQPRKL   70 (391)
T ss_pred             cceeeeeeccceeEEEccC----------CCc-eeEEecCchHHhhc-ccCCCeEEEEeeccc---ceeEEEecCCCceE
Confidence            4577788999987777777          455 57888775332111 111133566666754   455544443  358


Q ss_pred             EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceE
Q psy17342        144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL  223 (401)
Q Consensus       144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (401)
                      ++.++........       .....+|.++.+    +.++|+++-++. |.+||++... ...++...    ..+...+.
T Consensus        71 kv~~~Kk~~~ICe-------~~fpt~IL~Vrm----Nr~RLvV~Lee~-IyIydI~~Mk-lLhTI~t~----~~n~~gl~  133 (391)
T KOG2110|consen   71 KVVHFKKKTTICE-------IFFPTSILAVRM----NRKRLVVCLEES-IYIYDIKDMK-LLHTIETT----PPNPKGLC  133 (391)
T ss_pred             EEEEcccCceEEE-------EecCCceEEEEE----ccceEEEEEccc-EEEEecccce-eehhhhcc----CCCccceE
Confidence            8888887664322       234568888887    556677766654 9999998733 33332221    23566677


Q ss_pred             EEEeccCCCCeEEEE--cCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCe-EEEEEee
Q psy17342        224 SLAFPQNDVNNFVVG--CEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWS-VKLWNIK  300 (401)
Q Consensus       224 ~~~~~~~~~~~l~~~--~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~  300 (401)
                      +++++ ..+.+++.-  ...|.|++||..  ..+.+..+..|.+++-+++|+|+      |.+|||+|..|+ |||+.+.
T Consensus       134 AlS~n-~~n~ylAyp~s~t~GdV~l~d~~--nl~~v~~I~aH~~~lAalafs~~------G~llATASeKGTVIRVf~v~  204 (391)
T KOG2110|consen  134 ALSPN-NANCYLAYPGSTTSGDVVLFDTI--NLQPVNTINAHKGPLAALAFSPD------GTLLATASEKGTVIRVFSVP  204 (391)
T ss_pred             eeccC-CCCceEEecCCCCCceEEEEEcc--cceeeeEEEecCCceeEEEECCC------CCEEEEeccCceEEEEEEcC
Confidence            77777 566677753  457889999987  44568888999999999999999      899999999886 7999999


Q ss_pred             CCCceEEEeec--CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcc----------------------------
Q psy17342        301 ENKPVHSFNEF--RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA----------------------------  350 (401)
Q Consensus       301 ~~~~~~~~~~~--~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----------------------------  350 (401)
                      +|+.+.+|+..  ...|.+++|+|+++ +|++.+..++|+||.+......+.                            
T Consensus       205 ~G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~  283 (391)
T KOG2110|consen  205 EGQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSV  283 (391)
T ss_pred             CccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhh
Confidence            99999998752  34688999999998 888888999999998864321100                            


Q ss_pred             ------e-EEeecCCCCeEEEEec--CCCcEEEEEecCCcEEEEEecc
Q psy17342        351 ------T-SAIVEGAPALSRVTWT--PNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       351 ------~-~~~~~~~~~v~~~~~s--~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                            + ....+....-..+.+.  +..+.+.+++.||.++.|.+.-
T Consensus       284 ~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~  331 (391)
T KOG2110|consen  284 LDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP  331 (391)
T ss_pred             hhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence                  0 0000111111223333  4678899999999999999865

>KOG1188|consensus

Probab=99.83  E-value=1.6e-18  Score=138.95  Aligned_cols=203  Identities=16%  Similarity=0.189  Sum_probs=153.1

Q ss_pred             ceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccc
Q psy17342        132 YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQ  211 (401)
Q Consensus       132 ~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~  211 (401)
                      ..++++..+|.|++||..+++...      .++++...++.+.|........+.+|+.||+|++||++...+.... ...
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~-~~~  113 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLE------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI-SWT  113 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhh------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe-ecc
Confidence            468888889999999999976542      3578888899999954336778999999999999999974332222 111


Q ss_pred             cccccCCccceEEEEeccCCCCeEEEEcC----CceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEE
Q psy17342        212 YNNKQTKNLAVLSLAFPQNDVNNFVVGCE----DGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLT  287 (401)
Q Consensus       212 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s  287 (401)
                      .    ....+..|++.+ -+.+++++|++    +-.+.+||.+..+...-.-...|...|+++.|+|.+     .++|++
T Consensus       114 ~----~~~~~f~~ld~n-ck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~-----pnlLlS  183 (376)
T KOG1188|consen  114 Q----QSGTPFICLDLN-CKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD-----PNLLLS  183 (376)
T ss_pred             C----CCCCcceEeecc-CcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC-----CCeEEe
Confidence            1    123466777776 57788888864    567999999976543333456799999999999997     899999


Q ss_pred             EeCCCeEEEEEeeCC---CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcce
Q psy17342        288 SSYDWSVKLWNIKEN---KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPAT  351 (401)
Q Consensus       288 ~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  351 (401)
                      ||.||-|.+||++..   ..+...-.|...|.++.|...+..-+.+-+......+|+++.+.....+
T Consensus       184 GSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~  250 (376)
T KOG1188|consen  184 GSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL  250 (376)
T ss_pred             ecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence            999999999999653   2222333457789999999988334777888999999999988754443

>KOG1240|consensus

Probab=99.82  E-value=1.5e-17  Score=153.94  Aligned_cols=310  Identities=12%  Similarity=0.111  Sum_probs=203.2

Q ss_pred             eeeeeeeccccccccceEEEEecCCC-CCeEEEEeccCCCCCCCCCcEEEEEeCcCC-----CCCceEEEe-cCCCeeEE
Q psy17342         52 SFCRQFFDEKWSKNRNVTYMDWSTQH-PELLLASYHRNKEAPNEPDGVCLIWNTKFK-----KTTPEFEFF-CQSPVLSC  124 (401)
Q Consensus        52 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~-----~~~~~~~~~-~~~~v~~~  124 (401)
                      ........+...|...|..++.++.. .++++|+          .||+|++|+...-     ....+..+. ....+.++
T Consensus      1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS----------~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~v 1104 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGS----------DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKV 1104 (1431)
T ss_pred             CccceEeehhhhccccccceeecCCCCceEEEec----------CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEE
Confidence            44445555666788889999988766 8888888          8999999998741     112233333 46789999


Q ss_pred             EEeCCCCceEEEEecCCeEEEEECCCCCCC---ceeeccccccCCCCcEEE-EEEeecCCceEEEEEeCCCcEEEeeccC
Q psy17342        125 CFAKFNPYLILGGTYSGQIVLWDTRVQKKT---PVHRTPLSVMAHTHPVFC-MSVIGTQNAHNLISISNDGRLCSWSLEM  200 (401)
Q Consensus       125 ~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~---~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~dg~i~~wd~~~  200 (401)
                      ...+.+ +.+|.++.||.|++.+++.....   ..+..... ....+.+.+ .+|........++.+..-+.|..||+++
T Consensus      1105 t~~~~~-~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n-~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1105 TMCGNG-DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPN-LKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred             EeccCC-CeEEEEcCCCeEEEEEccccccccceeeeeeccc-ccCCCceEEeecccccccceeEEEEEeccceEEecchh
Confidence            999866 78888899999999999873211   11111011 122233333 3442222224788888999999999986


Q ss_pred             CCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec-CCCCceeeeecCccCCCC
Q psy17342        201 LSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE-GHEGPVVGLSSHRAQGHI  279 (401)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~  279 (401)
                      .. .....+.     ....+.|++++.+ +.++.+++|+..|.+.+||++-+..  +..+. ++..+|+.+..+|.... 
T Consensus      1183 ~~-~~w~lk~-----~~~hG~vTSi~id-p~~~WlviGts~G~l~lWDLRF~~~--i~sw~~P~~~~i~~v~~~~~~~~- 1252 (1431)
T KOG1240|consen 1183 RH-DAWRLKN-----QLRHGLVTSIVID-PWCNWLVIGTSRGQLVLWDLRFRVP--ILSWEHPARAPIRHVWLCPTYPQ- 1252 (1431)
T ss_pred             hh-hHHhhhc-----CccccceeEEEec-CCceEEEEecCCceEEEEEeecCce--eecccCcccCCcceEEeeccCCC-
Confidence            22 2222222     2356789999999 7888999999999999999985543  33332 45688899988887521 


Q ss_pred             CCCcEEEEEe--CCCeEEEEEeeCCCceEEEeecCC-------------------ceEEEEECCCCCcEEEEEecCCEEE
Q psy17342        280 DFSHLYLTSS--YDWSVKLWNIKENKPVHSFNEFRD-------------------YVMDVQWSPINPALFATVEVAGRVD  338 (401)
Q Consensus       280 ~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~-------------------~v~~v~~~~~~~~~l~~~~~d~~i~  338 (401)
                        ....++++  ..+.|.+|++.+|.+...+...++                   ......+. ++..++.+|+.|..|+
T Consensus      1253 --~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~-~~~~~~ltggsd~kIR 1329 (1431)
T KOG1240|consen 1253 --ESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC-EKNGFLLTGGSDMKIR 1329 (1431)
T ss_pred             --CceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc-cCCceeeecCCcccee
Confidence              14555544  477899999999876666543211                   11112222 2233789999999999


Q ss_pred             EEeCCCCCCCc----------------------------------------c-----eE--------EeecCCCCeEEEE
Q psy17342        339 LWNLNLDTEVP----------------------------------------A-----TS--------AIVEGAPALSRVT  365 (401)
Q Consensus       339 iwd~~~~~~~~----------------------------------------~-----~~--------~~~~~~~~v~~~~  365 (401)
                      .||........                                        .     ..        ....|+.+|++++
T Consensus      1330 ~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma 1409 (1431)
T KOG1240|consen 1330 KWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMA 1409 (1431)
T ss_pred             eccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhh
Confidence            99976432210                                        0     00        0012566788888


Q ss_pred             ecCC-CcEEEEEecCCcEEEEE
Q psy17342        366 WTPN-GTQLCVGDEKGAITMFD  386 (401)
Q Consensus       366 ~s~~-g~~l~~~~~dg~v~iw~  386 (401)
                      +... ..+|++++.||.|+||.
T Consensus      1410 ~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1410 TLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             hhccCccEEEEecCCCeeeecC
Confidence            7654 46889999999999994

>KOG2110|consensus

Probab=99.82  E-value=2e-17  Score=134.15  Aligned_cols=238  Identities=14%  Similarity=0.186  Sum_probs=168.1

Q ss_pred             CCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC--cEEEe
Q psy17342        119 SPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG--RLCSW  196 (401)
Q Consensus       119 ~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~~w  196 (401)
                      ..+..+.|+.+. ..|..|+.|| .++|+.......      .......-.|--+-|  +  ..+++..+.+.  .+++.
T Consensus         6 ~ti~~~~~Nqd~-~~lsvGs~~G-yk~~~~~~~~k~------~~~~~~~~~IvEmLF--S--SSLvaiV~~~qpr~Lkv~   73 (391)
T KOG2110|consen    6 PTINFIGFNQDS-TLLSVGSKDG-YKIFSCSPFEKC------FSKDTEGVSIVEMLF--S--SSLVAIVSIKQPRKLKVV   73 (391)
T ss_pred             cceeeeeeccce-eEEEccCCCc-eeEEecCchHHh------hcccCCCeEEEEeec--c--cceeEEEecCCCceEEEE
Confidence            345666788865 6888898887 678877654321      111222334444445  3  34555554443  48888


Q ss_pred             eccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec---CCCCceeeeecC
Q psy17342        197 SLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE---GHEGPVVGLSSH  273 (401)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~---~~~~~v~~i~~~  273 (401)
                      +++..   ....++.      ....|.++.++   .+.|++.-++. |++||++..+  +++++.   .+...+.+++.+
T Consensus        74 ~~Kk~---~~ICe~~------fpt~IL~VrmN---r~RLvV~Lee~-IyIydI~~Mk--lLhTI~t~~~n~~gl~AlS~n  138 (391)
T KOG2110|consen   74 HFKKK---TTICEIF------FPTSILAVRMN---RKRLVVCLEES-IYIYDIKDMK--LLHTIETTPPNPKGLCALSPN  138 (391)
T ss_pred             EcccC---ceEEEEe------cCCceEEEEEc---cceEEEEEccc-EEEEecccce--eehhhhccCCCccceEeeccC
Confidence            87641   1111211      23478888876   45666665544 9999998543  455544   344455555555


Q ss_pred             ccCCCCCCCcEEEEEeC--CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCE-EEEEeCCCCCCCcc
Q psy17342        274 RAQGHIDFSHLYLTSSY--DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGR-VDLWNLNLDTEVPA  350 (401)
Q Consensus       274 ~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~  350 (401)
                      +.      +.+++--+.  .|.|.|||..+-+++..+..|.+.+.+++|+|+|. +||++++.|+ ||++.+.+++.+..
T Consensus       139 ~~------n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~e  211 (391)
T KOG2110|consen  139 NA------NCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYE  211 (391)
T ss_pred             CC------CceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeee
Confidence            54      457665432  68999999999999999999999999999999997 9999999886 78999999988877


Q ss_pred             eEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        351 TSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       351 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      ++.-.. ...|.+++|+|++++|++.+..++|+||+++...
T Consensus       212 FRRG~~-~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  212 FRRGTY-PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eeCCce-eeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            764322 4578999999999999999999999999998764

>KOG1523|consensus

Probab=99.81  E-value=8.9e-18  Score=133.59  Aligned_cols=231  Identities=13%  Similarity=0.118  Sum_probs=171.3

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCC-CCceEE-EecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK-TTPEFE-FFCQSPVLSCCFAKFNPYLILGGTYSGQI  143 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~dg~v  143 (401)
                      .+|+|.+|++|+..+|.+.          ....|.||...... -.+... ..|...|+.++|+|.. +.|++++.|..-
T Consensus        11 ~pitchAwn~drt~iAv~~----------~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drna   79 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSP----------NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNA   79 (361)
T ss_pred             CceeeeeecCCCceEEecc----------CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-CceeEccCCCCc
Confidence            6799999999999999888          78899999988655 222222 3478899999999976 688899999999


Q ss_pred             EEEECC-CCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        144 VLWDTR-VQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       144 ~iw~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      ++|... .+.-.+.    +.+..++..++++.|  +|.++.|++|+.-..|.+|-++....--....+    ..++...|
T Consensus        80 yVw~~~~~~~Wkpt----lvLlRiNrAAt~V~W--sP~enkFAVgSgar~isVcy~E~ENdWWVsKhi----kkPirStv  149 (361)
T KOG1523|consen   80 YVWTQPSGGTWKPT----LVLLRINRAATCVKW--SPKENKFAVGSGARLISVCYYEQENDWWVSKHI----KKPIRSTV  149 (361)
T ss_pred             cccccCCCCeeccc----eeEEEeccceeeEee--cCcCceEEeccCccEEEEEEEecccceehhhhh----CCccccce
Confidence            999984 4433332    445789999999999  999999999999999999988742211001011    23467889


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCC-----CCC-----------CCceeeecCCCCceeeeecCccCCCCCCCcEEE
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRH-----GNK-----------AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL  286 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~-----~~~-----------~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~  286 (401)
                      ++++|+ +++-++++|+.|+.+|++..-     ...           +.++..+....+.+..+.|+|.      ++.|+
T Consensus       150 ~sldWh-pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s------G~~la  222 (361)
T KOG1523|consen  150 TSLDWH-PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS------GNRLA  222 (361)
T ss_pred             eeeecc-CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC------CCEee
Confidence            999999 889999999999999998531     111           1122233345678999999999      89999


Q ss_pred             EEeCCCeEEEEEeeCCC-ceEEEeecCCceEEEEECCCC
Q psy17342        287 TSSYDWSVKLWNIKENK-PVHSFNEFRDYVMDVQWSPIN  324 (401)
Q Consensus       287 s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~v~~~~~~  324 (401)
                      -.+.|..+.+-|..... .+.......-+..++.|-.+.
T Consensus       223 wv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~  261 (361)
T KOG1523|consen  223 WVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN  261 (361)
T ss_pred             EecCCCceEEeecCCCchhccchhhccCCceeeEeecCC
Confidence            99999999999986553 333333333566777776554

>KOG1963|consensus

Probab=99.81  E-value=3.1e-17  Score=147.05  Aligned_cols=292  Identities=13%  Similarity=0.153  Sum_probs=206.0

Q ss_pred             EEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCC--ceEEEEecCCeEEEEEC
Q psy17342         71 MDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNP--YLILGGTYSGQIVLWDT  148 (401)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~g~~dg~v~iw~~  148 (401)
                      -.|++|+++++...           +..|.||...++.++.. .-.|..+++.+.+.|...  .++++++.+|.|++||.
T Consensus        22 avfSnD~k~l~~~~-----------~~~V~VyS~~Tg~~i~~-l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~   89 (792)
T KOG1963|consen   22 AVFSNDAKFLFLCT-----------GNFVKVYSTATGECITS-LEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDW   89 (792)
T ss_pred             cccccCCcEEEEee-----------CCEEEEEecchHhhhhh-cccccCccceeeecCCCccceEEEEEecCccEEEecC
Confidence            45999999999888           79999999999988873 345689999999998765  46778999999999999


Q ss_pred             CCCCCCceeecccc-----ccCCCCc-----------------------------------------------EEEEEEe
Q psy17342        149 RVQKKTPVHRTPLS-----VMAHTHP-----------------------------------------------VFCMSVI  176 (401)
Q Consensus       149 ~~~~~~~~~~~~~~-----~~~~~~~-----------------------------------------------v~~~~~~  176 (401)
                      ..+.....+.....     +..+...                                               -.++.+ 
T Consensus        90 ~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~-  168 (792)
T KOG1963|consen   90 SDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVD-  168 (792)
T ss_pred             CCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEE-
Confidence            87654322211000     0000000                                               011111 


Q ss_pred             ecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCC--CCC
Q psy17342        177 GTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHG--NKA  254 (401)
Q Consensus       177 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~--~~~  254 (401)
                       ++.+.. .....+..+.+|......  .......  ....|...+++.+++ |.++++++|..||.|.+|.--+  ...
T Consensus       169 -~~~ge~-~~i~~~~~~~~~~v~~~~--~~~~~~~--~~~~Htf~~t~~~~s-pn~~~~Aa~d~dGrI~vw~d~~~~~~~  241 (792)
T KOG1963|consen  169 -NNSGEF-KGIVHMCKIHIYFVPKHT--KHTSSRD--ITVHHTFNITCVALS-PNERYLAAGDSDGRILVWRDFGSSDDS  241 (792)
T ss_pred             -cCCceE-EEEEEeeeEEEEEecccc--eeeccch--hhhhhcccceeEEec-cccceEEEeccCCcEEEEecccccccc
Confidence             222322 222334456677766422  1111111  123366678999999 8999999999999999996543  222


Q ss_pred             CceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecC
Q psy17342        255 GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVA  334 (401)
Q Consensus       255 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d  334 (401)
                      .....+.-|..+|++++|+++      |.+|++|+..+.+.+|.+.+++ .+-++.-.++|..+.++|++. +.+....|
T Consensus       242 ~t~t~lHWH~~~V~~L~fS~~------G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~-~~sl~~~D  313 (792)
T KOG1963|consen  242 ETCTLLHWHHDEVNSLSFSSD------GAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSD-LYSLVLED  313 (792)
T ss_pred             ccceEEEecccccceeEEecC------CceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCC-eEEEEecC
Confidence            234567789999999999999      8999999999999999999988 344555678999999999997 67777789


Q ss_pred             CEEEEEeCCCCCCCcceEEeec--------CCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        335 GRVDLWNLNLDTEVPATSAIVE--------GAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       335 ~~i~iwd~~~~~~~~~~~~~~~--------~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      +.|.+....+......+.....        ...-.+.++++|.-+.++-.+..|.|.+||+-+.
T Consensus       314 NqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td  377 (792)
T KOG1963|consen  314 NQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTD  377 (792)
T ss_pred             ceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccc
Confidence            9999998765443333222111        2345678999997778888899999999999876

>KOG1523|consensus

Probab=99.80  E-value=1.9e-17  Score=131.75  Aligned_cols=238  Identities=14%  Similarity=0.150  Sum_probs=180.2

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCC-CceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEe
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKK-TPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSW  196 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~w  196 (401)
                      ..+|+|.+|+++. ..++.+..+..|.||....... .+.    .++..|...|+.++|  .|..+.|++++.|..-.+|
T Consensus        10 ~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w~~~----htls~Hd~~vtgvdW--ap~snrIvtcs~drnayVw   82 (361)
T KOG1523|consen   10 LEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLWEPA----HTLSEHDKIVTGVDW--APKSNRIVTCSHDRNAYVW   82 (361)
T ss_pred             cCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCceec----eehhhhCcceeEEee--cCCCCceeEccCCCCcccc
Confidence            5799999999977 6888888889999999887662 221    346889999999999  8999999999999999999


Q ss_pred             eccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCC--ceeeecCCCCceeeeecCc
Q psy17342        197 SLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAG--NVECYEGHEGPVVGLSSHR  274 (401)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~--~~~~~~~~~~~v~~i~~~~  274 (401)
                      .......-.....+..     +....+++.|+ |.++.|++|+....|.+|-.+.+..=  ....-+.+...|++++|+|
T Consensus        83 ~~~~~~~WkptlvLlR-----iNrAAt~V~Ws-P~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp  156 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLR-----INRAATCVKWS-PKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP  156 (361)
T ss_pred             ccCCCCeeccceeEEE-----eccceeeEeec-CcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC
Confidence            9865565566666555     78899999999 89999999999999999877643321  1123345778899999999


Q ss_pred             cCCCCCCCcEEEEEeCCCeEEEEEeeC------------------CCceEEEeecCCceEEEEECCCCCcEEEEEecCCE
Q psy17342        275 AQGHIDFSHLYLTSSYDWSVKLWNIKE------------------NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGR  336 (401)
Q Consensus       275 ~~~~~~~~~~l~s~~~d~~i~iwd~~~------------------~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~  336 (401)
                      +      +-++++|+.|+..|++..--                  |+.+.++....+.+..+.|+|+|. .|+-.+.|..
T Consensus       157 n------nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~  229 (361)
T KOG1523|consen  157 N------NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDST  229 (361)
T ss_pred             C------cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCc
Confidence            9      68999999999999997521                  133445544578899999999997 6888889999


Q ss_pred             EEEEeCCCCCC-CcceEEeecCCCCeEEEEecCCCcEEEEEecC
Q psy17342        337 VDLWNLNLDTE-VPATSAIVEGAPALSRVTWTPNGTQLCVGDEK  379 (401)
Q Consensus       337 i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  379 (401)
                      +.+-|.....+ ++...   ...-+..++.|-.+.. ++.++.|
T Consensus       230 v~~~da~~p~~~v~~~~---~~~lP~ls~~~ise~~-vv~ag~~  269 (361)
T KOG1523|consen  230 VSFVDAAGPSERVQSVA---TAQLPLLSVSWISENS-VVAAGYD  269 (361)
T ss_pred             eEEeecCCCchhccchh---hccCCceeeEeecCCc-eeecCCC
Confidence            99999876642 22221   1125566666654433 3334444

>KOG1334|consensus

Probab=99.80  E-value=8.6e-19  Score=146.81  Aligned_cols=302  Identities=15%  Similarity=0.185  Sum_probs=223.0

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCC-CceEEEEecCC
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFN-PYLILGGTYSG  141 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~g~~dg  141 (401)
                      .|.+.|..+.|+..|..|++++          .|..|.+||+..+.....+..+|...|..-.|-|.. ..-+++++.||
T Consensus       140 ~H~GcVntV~FN~~Gd~l~SgS----------DD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg  209 (559)
T KOG1334|consen  140 KHKGCVNTVHFNQRGDVLASGS----------DDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG  209 (559)
T ss_pred             CCCCccceeeecccCceeeccC----------ccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccC
Confidence            4889999999999999999999          899999999998888888888888889888898864 34788888999


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccc
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA  221 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  221 (401)
                      .|++=.+.......   ....+..|.++|..++.. ......|.+++.|+.+.-+|++. ..+...+..... .......
T Consensus       210 qvr~s~i~~t~~~e---~t~rl~~h~g~vhklav~-p~sp~~f~S~geD~~v~~~Dlr~-~~pa~~~~cr~~-~~~~~v~  283 (559)
T KOG1334|consen  210 QVRVSEILETGYVE---NTKRLAPHEGPVHKLAVE-PDSPKPFLSCGEDAVVFHIDLRQ-DVPAEKFVCREA-DEKERVG  283 (559)
T ss_pred             ceeeeeecccccee---cceecccccCccceeeec-CCCCCcccccccccceeeeeecc-CCccceeeeecc-CCcccee
Confidence            99988775433211   112346899999999983 22345799999999999999986 334443333221 1111236


Q ss_pred             eEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCC----ceeeecCC------CCceeeeecCccCCCCCCCcEEEEEeCC
Q psy17342        222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAG----NVECYEGH------EGPVVGLSSHRAQGHIDFSHLYLTSSYD  291 (401)
Q Consensus       222 v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~----~~~~~~~~------~~~v~~i~~~~~~~~~~~~~~l~s~~~d  291 (401)
                      ...++..|.+...+++|+.|..+++||.+.-...    .+..+-.|      .-.|++++++...     +.+|++ ..|
T Consensus       284 L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~-----sElLaS-YnD  357 (559)
T KOG1334|consen  284 LYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG-----SELLAS-YND  357 (559)
T ss_pred             eeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc-----cceeee-ecc
Confidence            7889999888889999999999999998743221    22333222      3468999999763     455554 558


Q ss_pred             CeEEEEEeeC--C----------CceEE-EeecCC--ceEEEEE-CCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee
Q psy17342        292 WSVKLWNIKE--N----------KPVHS-FNEFRD--YVMDVQW-SPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV  355 (401)
Q Consensus       292 ~~i~iwd~~~--~----------~~~~~-~~~~~~--~v~~v~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  355 (401)
                      -.|+++.-.-  +          ..+.. +++|..  .|..+-| -|... ++++|+.-|.|.||+-.+++.+..+.   
T Consensus       358 e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K~t~eii~~Me---  433 (559)
T KOG1334|consen  358 EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDKKTGEIIRFME---  433 (559)
T ss_pred             cceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccc-eEEecCccceEEEEecchhHHHHHhh---
Confidence            8899985322  2          22233 667654  4666765 45554 89999999999999999988776654   


Q ss_pred             cCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        356 EGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       356 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      +....|+|+.-+|--..||+++-|..|+||-..+.
T Consensus       434 gDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  434 GDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             cccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence            33448999999999999999999999999998554

>KOG1240|consensus

Probab=99.80  E-value=1.6e-17  Score=153.77  Aligned_cols=269  Identities=14%  Similarity=0.159  Sum_probs=186.7

Q ss_pred             EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCC-ceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcE
Q psy17342        115 FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKT-PVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRL  193 (401)
Q Consensus       115 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i  193 (401)
                      ..|...+..++.++....++++|+.||+|++|+.+.-... ...+...++......+.++..  .+.++.+|.++.||.|
T Consensus      1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~--~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTM--CGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred             hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEe--ccCCCeEEEEcCCCeE
Confidence            3467888899999877689999999999999999865443 344444555556778888888  7889999999999999


Q ss_pred             EEeeccCCCCCcccc-ccccccccCCccceEEEEeccCCCC-eEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeee
Q psy17342        194 CSWSLEMLSSPQETR-DLQYNNKQTKNLAVLSLAFPQNDVN-NFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLS  271 (401)
Q Consensus       194 ~~wd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~  271 (401)
                      .+.+++......... .....+......-|...++...... .++.++..+.|..||.+..............+.|++++
T Consensus      1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred             EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE
Confidence            999987521111110 0000001122233444455533444 78889999999999998544322333445678999999


Q ss_pred             cCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee-cCCceEEEEECCCCC--cEEEEE-e-cCCEEEEEeCCCCC
Q psy17342        272 SHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE-FRDYVMDVQWSPINP--ALFATV-E-VAGRVDLWNLNLDT  346 (401)
Q Consensus       272 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~--~~l~~~-~-~d~~i~iwd~~~~~  346 (401)
                      .+|.      ++++++|...|.+.+||++-+.++..+.. +..++..+..+|-.+  ...+++ + ..+.|.+|++.++.
T Consensus      1203 idp~------~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1203 IDPW------CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             ecCC------ceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence            9999      78999999999999999999998888763 456788887777543  344444 3 57889999999875


Q ss_pred             CCcceEEe---------ec-------CCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        347 EVPATSAI---------VE-------GAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       347 ~~~~~~~~---------~~-------~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      ....+...         .+       +.-......+..-+.++.+|+.|..|+.||....+
T Consensus      1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence            43333211         01       11122233444456789999999999999998764

>KOG0303|consensus

Probab=99.80  E-value=2.1e-18  Score=140.86  Aligned_cols=166  Identities=17%  Similarity=0.218  Sum_probs=140.1

Q ss_pred             ccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCC-----CCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe
Q psy17342        215 KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGN-----KAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS  289 (401)
Q Consensus       215 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~  289 (401)
                      ..+|..+|..++|+|.+.+.||+|++|..|.+|.+-.+     -..++..+.+|...|.-++|+|.-     .+.|++++
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA-----~NVLlsag  151 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA-----PNVLLSAG  151 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc-----hhhHhhcc
Confidence            56799999999999999999999999999999987532     224577888999999999999986     78999999


Q ss_pred             CCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecC-CCCeEEEEecC
Q psy17342        290 YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG-APALSRVTWTP  368 (401)
Q Consensus       290 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~s~  368 (401)
                      .|.+|.+||+.+++.+.++. |...|+++.|+.+|. +|++.+.|..|+|||.++++.+....   .| ...-..+.|-.
T Consensus       152 ~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~---~heG~k~~Raifl~  226 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGV---AHEGAKPARAIFLA  226 (472)
T ss_pred             CCceEEEEeccCCceeeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecc---cccCCCcceeEEec
Confidence            99999999999999999988 999999999999997 89999999999999999988765542   23 23345567888


Q ss_pred             CCcEEEEEe---cCCcEEEEEeccC
Q psy17342        369 NGTQLCVGD---EKGAITMFDVGEV  390 (401)
Q Consensus       369 ~g~~l~~~~---~dg~v~iw~~~~~  390 (401)
                      +|.++-+|.   ++..+-+||..+-
T Consensus       227 ~g~i~tTGfsr~seRq~aLwdp~nl  251 (472)
T KOG0303|consen  227 SGKIFTTGFSRMSERQIALWDPNNL  251 (472)
T ss_pred             cCceeeeccccccccceeccCcccc
Confidence            888665553   4678999987654

>KOG1517|consensus

Probab=99.80  E-value=3.3e-17  Score=149.53  Aligned_cols=264  Identities=16%  Similarity=0.186  Sum_probs=183.3

Q ss_pred             CCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeec
Q psy17342        119 SPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSL  198 (401)
Q Consensus       119 ~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~  198 (401)
                      .+...+.|+|..+ .++++...-.|++||.+.++....+..   -......|+.+.+....+..++++++.||.|++|+-
T Consensus      1065 ~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n---~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDN---GAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred             CCCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccC---CCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence            3567788999774 566666567899999998876432211   123456789999977778889999999999999975


Q ss_pred             cCCC-CCccccc----cccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec-CCCCceeeeec
Q psy17342        199 EMLS-SPQETRD----LQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE-GHEGPVVGLSS  272 (401)
Q Consensus       199 ~~~~-~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~-~~~~~v~~i~~  272 (401)
                      -... .+.+...    +... ..+..+.-.-+.|. ....+|++++.-..|++||....  .....+. +....|+++.-
T Consensus      1141 y~~~~~~~eLVTaw~~Ls~~-~~~~r~~~~v~dWq-Q~~G~Ll~tGd~r~IRIWDa~~E--~~~~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQ-LPGARGTGLVVDWQ-QQSGHLLVTGDVRSIRIWDAHKE--QVVADIPYGSSTLVTALSA 1216 (1387)
T ss_pred             cccccCCceeEEeecccccc-CccCCCCCeeeehh-hhCCeEEecCCeeEEEEEecccc--eeEeecccCCCccceeecc
Confidence            4322 1111111    1110 11111122456777 45556666666889999999743  2333332 34556777766


Q ss_pred             CccCCCCCCCcEEEEEeCCCeEEEEEeeCC---CceEEEeecCCc--eEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC
Q psy17342        273 HRAQGHIDFSHLYLTSSYDWSVKLWNIKEN---KPVHSFNEFRDY--VMDVQWSPINPALFATVEVAGRVDLWNLNLDTE  347 (401)
Q Consensus       273 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~--v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  347 (401)
                      +-..     ++.++.|..||.|++||.+..   ..+...+.|+..  |..+.+.+.|-.-|++|+.||.|++||++....
T Consensus      1217 ~~~~-----gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1217 DLVH-----GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK 1291 (1387)
T ss_pred             cccC-----CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc
Confidence            6554     799999999999999999864   356677778877  999999998765689999999999999998533


Q ss_pred             CcceEEeecC--CCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceee
Q psy17342        348 VPATSAIVEG--APALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLK  396 (401)
Q Consensus       348 ~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~  396 (401)
                      ...+.....-  .+..+++..++....+|+|+. +.|+||++...++..++
T Consensus      1292 e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1292 ETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred             cccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccc
Confidence            3333322211  335999999999999999998 89999999876544433

>KOG1538|consensus

Probab=99.79  E-value=8.4e-18  Score=146.30  Aligned_cols=239  Identities=13%  Similarity=0.177  Sum_probs=183.9

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      +|++.|.|++|+.+|+.+++|+          .|..|.+|+.+-   ...+.+.|...|.|+.|+|-+ ..|++++- ..
T Consensus        51 gHKDtVycVAys~dGkrFASG~----------aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~-h~LasCsL-sd  115 (1081)
T KOG1538|consen   51 GHKDTVYCVAYAKDGKRFASGS----------ADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPIT-HQLASCSL-SD  115 (1081)
T ss_pred             cccceEEEEEEccCCceeccCC----------CceeEEEecccc---cceeeeccCCeeeEeecCchH-HHhhhcch-hh
Confidence            6889999999999999999999          899999999753   344567899999999999966 78888764 46


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      .-+|........        .......|.+.+|  ..+|.+++.|-.+|+|.+-+-.  +++...++.    ..+...+|
T Consensus       116 FglWS~~qK~V~--------K~kss~R~~~CsW--tnDGqylalG~~nGTIsiRNk~--gEek~~I~R----pgg~Nspi  179 (1081)
T KOG1538|consen  116 FGLWSPEQKSVS--------KHKSSSRIICCSW--TNDGQYLALGMFNGTISIRNKN--GEEKVKIER----PGGSNSPI  179 (1081)
T ss_pred             ccccChhhhhHH--------hhhhheeEEEeee--cCCCcEEEEeccCceEEeecCC--CCcceEEeC----CCCCCCCc
Confidence            788987665431        1233456778888  9999999999999999997543  333332222    34578899


Q ss_pred             EEEEeccCCC----CeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        223 LSLAFPQNDV----NNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       223 ~~~~~~~~~~----~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      .+++|+|..+    ..+++..-+.++..+.+.+......+.   -.-...|+++.|+      |.+++.|+.|+.+.+|-
T Consensus       180 wsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~---L~FdP~CisYf~N------GEy~LiGGsdk~L~~fT  250 (1081)
T KOG1538|consen  180 WSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRA---LNFDPCCISYFTN------GEYILLGGSDKQLSLFT  250 (1081)
T ss_pred             eEEEecCCCCCCccceEEEEeccceeEEEEecceeeccccc---CCCCchhheeccC------CcEEEEccCCCceEEEe
Confidence            9999996443    467777777888888776543221111   2223468889998      89999999999999996


Q ss_pred             eeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCC
Q psy17342        299 IKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~  343 (401)
                       +.|-.+.++.....+|+.++..|+++ .++.|..||+|-.|++.
T Consensus       251 -R~GvrLGTvg~~D~WIWtV~~~PNsQ-~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  251 -RDGVRLGTVGEQDSWIWTVQAKPNSQ-YVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             -ecCeEEeeccccceeEEEEEEccCCc-eEEEEEccCeeehhhhH
Confidence             45777777777788999999999998 78899999999999874

>KOG2111|consensus

Probab=99.78  E-value=1.9e-15  Score=120.51  Aligned_cols=241  Identities=14%  Similarity=0.258  Sum_probs=163.4

Q ss_pred             ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecC-CCeeEEEEeCCCCceEEEEecC-----
Q psy17342         67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKFNPYLILGGTYS-----  140 (401)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~g~~d-----  140 (401)
                      ...+++|+.|...+++|.           +.-.+||+++.-+.......... -.+..|-|-. + .+.+.|+.+     
T Consensus         7 ~~lsvs~NQD~ScFava~-----------~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~-N-~laLVGGg~~pky~   73 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVAT-----------DTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRS-N-YLALVGGGSRPKYP   73 (346)
T ss_pred             ceeEEEEccCCceEEEEe-----------cCceEEEecCchhhhhhhccccCchhhhhHhhhh-c-eEEEecCCCCCCCC
Confidence            356699999998888888           77789999985332222222211 2333333422 1 333444433     


Q ss_pred             -CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342        141 -GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       141 -g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                       +.|.|||=.....       +.......+|.++.+    ..+.|++. ..+.|.+|....  .++....+..   ....
T Consensus        74 pNkviIWDD~k~~~-------i~el~f~~~I~~V~l----~r~riVvv-l~~~I~VytF~~--n~k~l~~~et---~~NP  136 (346)
T KOG2111|consen   74 PNKVIIWDDLKERC-------IIELSFNSEIKAVKL----RRDRIVVV-LENKIYVYTFPD--NPKLLHVIET---RSNP  136 (346)
T ss_pred             CceEEEEecccCcE-------EEEEEeccceeeEEE----cCCeEEEE-ecCeEEEEEcCC--Chhheeeeec---ccCC
Confidence             4699999333322       122356789999998    34455555 456899999873  2333332222   1123


Q ss_pred             cceEEEEeccCCCCeEEE-EcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCe-EEEE
Q psy17342        220 LAVLSLAFPQNDVNNFVV-GCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWS-VKLW  297 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~-~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~-i~iw  297 (401)
                      ....+++-. .+...|+. |-.-|.|++-|+............+|...|.|++.+..      |.++||+|..|+ ||||
T Consensus       137 kGlC~~~~~-~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~------Gt~vATaStkGTLIRIF  209 (346)
T KOG2111|consen  137 KGLCSLCPT-SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ------GTLVATASTKGTLIRIF  209 (346)
T ss_pred             CceEeecCC-CCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC------ccEEEEeccCcEEEEEE
Confidence            344444433 33334443 45678999999986554345678899999999999988      899999999887 8999


Q ss_pred             EeeCCCceEEEee--cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342        298 NIKENKPVHSFNE--FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD  345 (401)
Q Consensus       298 d~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~  345 (401)
                      |..+|+++.++..  ....|.+++|||+.. +||++|+.|+|+|+.++..
T Consensus       210 dt~~g~~l~E~RRG~d~A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  210 DTEDGTLLQELRRGVDRADIYCIAFSPNSS-WLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EcCCCcEeeeeecCCchheEEEEEeCCCcc-EEEEEcCCCeEEEEEeecC
Confidence            9999999999875  345799999999997 8999999999999998763

>KOG2139|consensus

Probab=99.78  E-value=6.5e-16  Score=125.16  Aligned_cols=292  Identities=14%  Similarity=0.158  Sum_probs=190.6

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQI  143 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v  143 (401)
                      .+-.+..++|++.-..++++.          .|-.|++|+-+. +....+.......|+|++|-|.+..-|+.|+.. -|
T Consensus        97 s~~dlr~~aWhqH~~~fava~----------nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gI  164 (445)
T KOG2139|consen   97 SEIDLRGVAWHQHIIAFAVAT----------NDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GI  164 (445)
T ss_pred             hhcceeeEeechhhhhhhhhc----------cCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-ee
Confidence            346688899999766677777          799999999885 444444444577899999999988889998765 49


Q ss_pred             EEEECCCCCCCce--------eeccccccCCCCcEEEEEEeecCCceEEEEEeC-CCcEEEeeccCCCCCcccccccccc
Q psy17342        144 VLWDTRVQKKTPV--------HRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-DGRLCSWSLEMLSSPQETRDLQYNN  214 (401)
Q Consensus       144 ~iw~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~  214 (401)
                      .+|.....-....        ....+...+| .+|+++.|  .++|..+++++- |..|.+||..+... .....  .  
T Consensus       165 ciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqw--n~dgt~l~tAS~gsssi~iWdpdtg~~-~pL~~--~--  236 (445)
T KOG2139|consen  165 CIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQW--NEDGTILVTASFGSSSIMIWDPDTGQK-IPLIP--K--  236 (445)
T ss_pred             EEEEcCcccccccccccccccchhheeCCCC-ceeeEEEE--cCCCCEEeecccCcceEEEEcCCCCCc-ccccc--c--
Confidence            9998754322111        0111223445 68999999  899999999876 56799999986322 21111  1  


Q ss_pred             ccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeE
Q psy17342        215 KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSV  294 (401)
Q Consensus       215 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i  294 (401)
                         ....++-+.|+ |++.+|.+++-|+..++|+....-.  .....--.+.|....|+|..     ..+|.+++  +.-
T Consensus       237 ---glgg~slLkwS-Pdgd~lfaAt~davfrlw~e~q~wt--~erw~lgsgrvqtacWspcG-----sfLLf~~s--gsp  303 (445)
T KOG2139|consen  237 ---GLGGFSLLKWS-PDGDVLFAATCDAVFRLWQENQSWT--KERWILGSGRVQTACWSPCG-----SFLLFACS--GSP  303 (445)
T ss_pred             ---CCCceeeEEEc-CCCCEEEEecccceeeeehhcccce--ecceeccCCceeeeeecCCC-----CEEEEEEc--CCc
Confidence               34578899999 8999999999999999996543221  11222234589999999993     33444444  444


Q ss_pred             EEEEeeCC-C--------------ceEEEe-----e----cCCceEEEEECCCCCcEEEEEecC--------CEEEEEeC
Q psy17342        295 KLWNIKEN-K--------------PVHSFN-----E----FRDYVMDVQWSPINPALFATVEVA--------GRVDLWNL  342 (401)
Q Consensus       295 ~iwd~~~~-~--------------~~~~~~-----~----~~~~v~~v~~~~~~~~~l~~~~~d--------~~i~iwd~  342 (401)
                      ++|.+.-. +              ++..+.     .    -.+++.+++|.|.|. ++|+.-..        ..|.+||.
T Consensus       304 ~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe-yLav~fKg~~~v~~~k~~i~~fdt  382 (445)
T KOG2139|consen  304 RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE-YLAVIFKGQSFVLLCKLHISRFDT  382 (445)
T ss_pred             eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC-EEEEEEcCCchhhhhhhhhhhhcc
Confidence            55554321 1              001110     1    145788999999998 56665433        24667776


Q ss_pred             CCCCCCcceEEeecCCCCeEEEEecC---CCcEEEEEecCCcEEEEEecc
Q psy17342        343 NLDTEVPATSAIVEGAPALSRVTWTP---NGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      +..-.+.....-.........++|+|   +|.+|..+=+.|.+.-|++.-
T Consensus       383 r~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f  432 (445)
T KOG2139|consen  383 RKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF  432 (445)
T ss_pred             cccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence            64332211110111122345567765   578888888899999998854

>KOG1354|consensus

Probab=99.78  E-value=3.9e-17  Score=131.28  Aligned_cols=298  Identities=16%  Similarity=0.276  Sum_probs=204.7

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE-----ec------------CCCeeEEEEe
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF-----FC------------QSPVLSCCFA  127 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-----~~------------~~~v~~~~~~  127 (401)
                      .+-|.++.|...|.+|++|.          .+|.|.++.-+.... .++.+     .|            ...|..+.|.
T Consensus        25 adiis~vef~~~Ge~LatGd----------kgGRVv~f~r~~~~~-~ey~~~t~fqshepEFDYLkSleieEKinkIrw~   93 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGD----------KGGRVVLFEREKLYK-GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWL   93 (433)
T ss_pred             hcceeeEEeecccceEeecC----------CCCeEEEeecccccc-cceeeeeeeeccCcccchhhhhhhhhhhhhceec
Confidence            36699999999999999999          799999997653221 01111     11            2578999999


Q ss_pred             CCCCc-eEEEEecCCeEEEEECCCCCCCc--------------------eee--------c--cccccCCCCcEEEEEEe
Q psy17342        128 KFNPY-LILGGTYSGQIVLWDTRVQKKTP--------------------VHR--------T--PLSVMAHTHPVFCMSVI  176 (401)
Q Consensus       128 ~~~~~-~l~~g~~dg~v~iw~~~~~~~~~--------------------~~~--------~--~~~~~~~~~~v~~~~~~  176 (401)
                      +++.. .+...+.|.+|++|.+.......                    ...        .  ..--.+|.--|+++++ 
T Consensus        94 ~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~-  172 (433)
T KOG1354|consen   94 DDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISV-  172 (433)
T ss_pred             CCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeee-
Confidence            86532 44445589999999886543221                    000        0  0112567888999998 


Q ss_pred             ecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCC--
Q psy17342        177 GTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKA--  254 (401)
Q Consensus       177 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--  254 (401)
                       +.+...++++ .|-.|.+|.++...+......+++.+...-..-|++..|+|...+.++-.+..|.|++.|++....  
T Consensus       173 -NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd  250 (433)
T KOG1354|consen  173 -NSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCD  250 (433)
T ss_pred             -cCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhc
Confidence             8888888875 677899999987555555555555333444567899999988889999999999999999984221  


Q ss_pred             ---Cce---------eeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe-eCCCceEEEeecCC--------
Q psy17342        255 ---GNV---------ECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI-KENKPVHSFNEFRD--------  313 (401)
Q Consensus       255 ---~~~---------~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~--------  313 (401)
                         +..         .-|..--..|..+.|+++      |+++++-. --+|++||+ ...+++.+++.|..        
T Consensus       251 ~hsKlfEepedp~~rsffseiIsSISDvKFs~s------GryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~l  323 (433)
T KOG1354|consen  251 AHSKLFEEPEDPSSRSFFSEIISSISDVKFSHS------GRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSL  323 (433)
T ss_pred             chhhhhccccCCcchhhHHHHhhhhhceEEccC------CcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHH
Confidence               000         011112246888999998      79998865 478999999 56788888887642        


Q ss_pred             ----c---eEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCC----------------cceEEee-cC------------
Q psy17342        314 ----Y---VMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV----------------PATSAIV-EG------------  357 (401)
Q Consensus       314 ----~---v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~----------------~~~~~~~-~~------------  357 (401)
                          .   -..++|+.++. .+++|+..+.++++++..+...                ....... ++            
T Consensus       324 YEnD~IfdKFec~~sg~~~-~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~l  402 (433)
T KOG1354|consen  324 YENDAIFDKFECSWSGNDS-YVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDAL  402 (433)
T ss_pred             hhccchhheeEEEEcCCcc-eEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchh
Confidence                2   24688999987 7999999999999996543221                0000000 00            


Q ss_pred             --CCCeEEEEecCCCcEEEEEecCCcEEEE
Q psy17342        358 --APALSRVTWTPNGTQLCVGDEKGAITMF  385 (401)
Q Consensus       358 --~~~v~~~~~s~~g~~l~~~~~dg~v~iw  385 (401)
                        ...+...+|+|..+.+|++..+. ++||
T Consensus       403 df~kkilh~aWhp~en~ia~aatnn-lyif  431 (433)
T KOG1354|consen  403 DFRKKILHTAWHPKENSIAVAATNN-LYIF  431 (433)
T ss_pred             hhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence              11355678999999998887664 6665

>KOG0644|consensus

Probab=99.77  E-value=2.1e-18  Score=153.45  Aligned_cols=271  Identities=18%  Similarity=0.222  Sum_probs=200.1

Q ss_pred             hhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEE
Q psy17342          5 EAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLAS   84 (401)
Q Consensus         5 ~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   84 (401)
                      .-|.+||||+.|-.++||..+....+...+                            +|.+.|+.++.+.+..++++++
T Consensus       200 rtg~~Iitgsdd~lvKiwS~et~~~lAs~r----------------------------Ghs~ditdlavs~~n~~iaaaS  251 (1113)
T KOG0644|consen  200 RTGRYIITGSDDRLVKIWSMETARCLASCR----------------------------GHSGDITDLAVSSNNTMIAAAS  251 (1113)
T ss_pred             cccceEeecCccceeeeeeccchhhhccCC----------------------------CCccccchhccchhhhhhhhcc
Confidence            457899999999999999977766554431                            5668899999999998889888


Q ss_pred             eccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecccccc
Q psy17342         85 YHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVM  164 (401)
Q Consensus        85 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~  164 (401)
                                .|..|++|.+..+..+. ...+|.+.|++++|+|..     +.+.||++++||.+-...... ..+..+.
T Consensus       252 ----------~D~vIrvWrl~~~~pvs-vLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~-prp~~~~  314 (1113)
T KOG0644|consen  252 ----------NDKVIRVWRLPDGAPVS-VLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYV-PRPLKFT  314 (1113)
T ss_pred             ----------cCceEEEEecCCCchHH-HHhccccceeeeccCccc-----cCCCCCceEeccccccccccC-CCCCCcc
Confidence                      69999999999876654 446789999999999943     567899999999982221111 1122222


Q ss_pred             CCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceE
Q psy17342        165 AHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNV  244 (401)
Q Consensus       165 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  244 (401)
                       ....+.++.|  ...+..+++++.|+.-..|.+....-              +...+.-+..+.....+.+++-.+..+
T Consensus       315 -~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~--------------~~~~lif~t~ssd~~~~~~~ar~~~~~  377 (1113)
T KOG0644|consen  315 -EKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAW--------------RSNLLIFVTRSSDLSSIVVTARNDHRL  377 (1113)
T ss_pred             -cccceeeeec--cccccccccccCCcccccchhhHhhh--------------hccceEEEeccccccccceeeeeeeEe
Confidence             2345666666  77888999999999998888753111              112222222221112455666677778


Q ss_pred             EEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCC
Q psy17342        245 YSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPIN  324 (401)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~  324 (401)
                      .+|++.  .....+.+.+|...++.+.++|.+     .....+++.||...|||+-.+.+++.+......+...+||++|
T Consensus       378 ~vwnl~--~g~l~H~l~ghsd~~yvLd~Hpfn-----~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdg  450 (1113)
T KOG0644|consen  378 CVWNLY--TGQLLHNLMGHSDEVYVLDVHPFN-----PRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDG  450 (1113)
T ss_pred             eeeecc--cchhhhhhcccccceeeeeecCCC-----cHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCC
Confidence            889887  444678888999999999999997     6788899999999999999998888765545678889999999


Q ss_pred             CcEEEEEecCCEEEEEeCCCC
Q psy17342        325 PALFATVEVAGRVDLWNLNLD  345 (401)
Q Consensus       325 ~~~l~~~~~d~~i~iwd~~~~  345 (401)
                      . -++....-|.++|.....+
T Consensus       451 t-s~~lsd~hgql~i~g~gqs  470 (1113)
T KOG0644|consen  451 T-SIALSDDHGQLYILGTGQS  470 (1113)
T ss_pred             c-eEecCCCCCceEEeccCCC
Confidence            7 5666666688888866443

>KOG4227|consensus

Probab=99.77  E-value=2.8e-17  Score=134.31  Aligned_cols=254  Identities=12%  Similarity=0.107  Sum_probs=181.1

Q ss_pred             EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccc--cCCCCcEEEEEEeecCCceEEEEEeCCCc
Q psy17342        115 FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSV--MAHTHPVFCMSVIGTQNAHNLISISNDGR  192 (401)
Q Consensus       115 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~  192 (401)
                      .+|.+.|+++.|+.++ ++|++|+.|..+++|+++..-...+ ..|+.+  ..|...|.|++|  ...+..+++|..+++
T Consensus        53 ~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k~-~KPI~~~~~~H~SNIF~L~F--~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   53 REHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRKT-PKPIGVMEHPHRSNIFSLEF--DLENRFLYSGERWGT  128 (609)
T ss_pred             hhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhcC-CCCceeccCccccceEEEEE--ccCCeeEecCCCcce
Confidence            4678999999999975 8999999999999999875322111 112222  456789999999  888899999999999


Q ss_pred             EEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCC-ceeeecCCCCceeeee
Q psy17342        193 LCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAG-NVECYEGHEGPVVGLS  271 (401)
Q Consensus       193 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~-~~~~~~~~~~~v~~i~  271 (401)
                      |...|+++..    .+.+..  .......|+.+..+ |-.+.|++.+.++.|.+||.+..... ....+........++.
T Consensus       129 VI~HDiEt~q----si~V~~--~~~~~~~VY~m~~~-P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~  201 (609)
T KOG4227|consen  129 VIKHDIETKQ----SIYVAN--ENNNRGDVYHMDQH-PTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE  201 (609)
T ss_pred             eEeeecccce----eeeeec--ccCcccceeecccC-CCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence            9999998622    222211  12245689999999 56889999999999999999865422 2223333456678899


Q ss_pred             cCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC-ceEEEe---e---cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        272 SHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK-PVHSFN---E---FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       272 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~---~---~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      |+|..     ..+|++.+..+-+-+||++... ++....   +   ....-.++.|+|.|.. |.+--....-.+||+-+
T Consensus       202 F~P~~-----P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q-~msiRR~~~P~~~D~~S  275 (609)
T KOG4227|consen  202 FHPET-----PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ-FMSIRRGKCPLYFDFIS  275 (609)
T ss_pred             ecCCC-----ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe-ehhhhccCCCEEeeeec
Confidence            99986     7899999999999999998642 222221   1   1223467899999974 55554555566788876


Q ss_pred             CCCCcceEEeecCC-------CCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        345 DTEVPATSAIVEGA-------PALSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       345 ~~~~~~~~~~~~~~-------~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      ..+ +.++.  .|.       ..+.+++|--|.. +++|+.+-.|++|.+..
T Consensus       276 ~R~-~V~k~--D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~  323 (609)
T KOG4227|consen  276 QRC-FVLKS--DHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPR  323 (609)
T ss_pred             ccc-eeEec--cCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCC
Confidence            443 33332  221       2466788876654 89999999999999864

>KOG1272|consensus

Probab=99.77  E-value=2.8e-18  Score=142.94  Aligned_cols=272  Identities=15%  Similarity=0.173  Sum_probs=206.2

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      -.-..+.++.+|+.|+.++          ..|.|-.+|+.+++...++  .-...|.++.|... .+++|++ ....+.|
T Consensus       130 FGPY~~~ytrnGrhlllgG----------rKGHlAa~Dw~t~~L~~Ei--~v~Etv~Dv~~LHn-eq~~AVA-QK~y~yv  195 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGG----------RKGHLAAFDWVTKKLHFEI--NVMETVRDVTFLHN-EQFFAVA-QKKYVYV  195 (545)
T ss_pred             cCCeeeeecCCccEEEecC----------Cccceeeeecccceeeeee--ehhhhhhhhhhhcc-hHHHHhh-hhceEEE
Confidence            4467899999999999999          7999999999987766544  44678999999884 4788877 6788999


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEE
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL  225 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (401)
                      ||-..-+...+        .....|..+.|  -|.--+|++++..|.++.-|+..+......        ....+.+..+
T Consensus       196 YD~~GtElHCl--------k~~~~v~rLeF--LPyHfLL~~~~~~G~L~Y~DVS~GklVa~~--------~t~~G~~~vm  257 (545)
T KOG1272|consen  196 YDNNGTELHCL--------KRHIRVARLEF--LPYHFLLVAASEAGFLKYQDVSTGKLVASI--------RTGAGRTDVM  257 (545)
T ss_pred             ecCCCcEEeeh--------hhcCchhhhcc--cchhheeeecccCCceEEEeechhhhhHHH--------HccCCccchh
Confidence            99876554321        23357888999  677788999999999999999874322221        1134567777


Q ss_pred             EeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCce
Q psy17342        226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPV  305 (401)
Q Consensus       226 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  305 (401)
                      +-+ |-...+-+|..+|.|.+|.....  .++..+..|.++|.+|++.+.      |.+++|.+.|..++|||++....+
T Consensus       258 ~qN-P~NaVih~GhsnGtVSlWSP~sk--ePLvKiLcH~g~V~siAv~~~------G~YMaTtG~Dr~~kIWDlR~~~ql  328 (545)
T KOG1272|consen  258 KQN-PYNAVIHLGHSNGTVSLWSPNSK--EPLVKILCHRGPVSSIAVDRG------GRYMATTGLDRKVKIWDLRNFYQL  328 (545)
T ss_pred             hcC-CccceEEEcCCCceEEecCCCCc--chHHHHHhcCCCcceEEECCC------CcEEeecccccceeEeeecccccc
Confidence            777 67788899999999999998744  356777889999999999999      899999999999999999998877


Q ss_pred             EEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCC-C---CCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCc
Q psy17342        306 HSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN-L---DTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGA  381 (401)
Q Consensus       306 ~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~-~---~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  381 (401)
                      .++.. ..+...+++|..|  +||.+ ....+.||.-. .   ....+.+..  .....|..+.|.|-...|-.|...|.
T Consensus       329 ~t~~t-p~~a~~ls~Sqkg--lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~H--~~~~~V~~l~FcP~EDvLGIGH~~G~  402 (545)
T KOG1272|consen  329 HTYRT-PHPASNLSLSQKG--LLALS-YGDHVQIWKDALKGSGHGETPYMNH--RCGGPVEDLRFCPYEDVLGIGHAGGI  402 (545)
T ss_pred             ceeec-CCCcccccccccc--ceeee-cCCeeeeehhhhcCCCCCCcchhhh--ccCcccccceeccHHHeeeccccCCc
Confidence            77665 5567889999877  45544 45689999532 2   112222222  22458999999998888877777664


Q ss_pred             EEE
Q psy17342        382 ITM  384 (401)
Q Consensus       382 v~i  384 (401)
                      -.|
T Consensus       403 tsi  405 (545)
T KOG1272|consen  403 TSI  405 (545)
T ss_pred             eeE
Confidence            433

>KOG2321|consensus

Probab=99.76  E-value=4.6e-17  Score=139.27  Aligned_cols=300  Identities=16%  Similarity=0.146  Sum_probs=201.1

Q ss_pred             ccccccccCCCCCCCCccccc-cccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEeccCCCCCCCCC
Q psy17342         18 LQADWNEEGDPGLPQLPQDLQ-FDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPD   96 (401)
Q Consensus        18 ~~~vw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d   96 (401)
                      .|+|+++...+.+|..-.+.+ -.--.+......+.+.+     .+.+...-+.|..+|||+|+++.+.         ..
T Consensus         8 dVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQ-----dfe~p~ast~ik~s~DGqY~lAtG~---------YK   73 (703)
T KOG2321|consen    8 DVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQ-----DFEMPTASTRIKVSPDGQYLLATGT---------YK   73 (703)
T ss_pred             ceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHH-----hcCCccccceeEecCCCcEEEEecc---------cC
Confidence            488898888888887755432 10000111122223322     2345578899999999999887774         68


Q ss_pred             cEEEEEeCcCCCCCc---------eE-------------------EEec----------CCCeeEEEEeCCCCceEEEEe
Q psy17342         97 GVCLIWNTKFKKTTP---------EF-------------------EFFC----------QSPVLSCCFAKFNPYLILGGT  138 (401)
Q Consensus        97 ~~v~iwd~~~~~~~~---------~~-------------------~~~~----------~~~v~~~~~~~~~~~~l~~g~  138 (401)
                      ..|++||+..-...-         .+                   .++.          +..-..++++.....+++.| 
T Consensus        74 P~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~g-  152 (703)
T KOG2321|consen   74 PQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVG-  152 (703)
T ss_pred             CceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCccccccCCCccEEEee-
Confidence            899999986421110         00                   0110          12233444544343455555 


Q ss_pred             cCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccc----c
Q psy17342        139 YSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYN----N  214 (401)
Q Consensus       139 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~----~  214 (401)
                      ....|+-++++.++....      +....+.++++..  ++...+|++|+.+|.|.+||.+..... ..+.....    .
T Consensus       153 sg~evYRlNLEqGrfL~P------~~~~~~~lN~v~i--n~~hgLla~Gt~~g~VEfwDpR~ksrv-~~l~~~~~v~s~p  223 (703)
T KOG2321|consen  153 SGSEVYRLNLEQGRFLNP------FETDSGELNVVSI--NEEHGLLACGTEDGVVEFWDPRDKSRV-GTLDAASSVNSHP  223 (703)
T ss_pred             cCcceEEEEccccccccc------cccccccceeeee--cCccceEEecccCceEEEecchhhhhh-eeeecccccCCCc
Confidence            456788888888876522      3445578999998  888889999999999999999863322 12111110    0


Q ss_pred             ccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeE
Q psy17342        215 KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSV  294 (401)
Q Consensus       215 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i  294 (401)
                      .......|+++.|+ .++-.+++|+.+|.+++||++..++- +..-.+...+|..+.|.+...    .+.+++.. ...+
T Consensus       224 g~~~~~svTal~F~-d~gL~~aVGts~G~v~iyDLRa~~pl-~~kdh~~e~pi~~l~~~~~~~----q~~v~S~D-k~~~  296 (703)
T KOG2321|consen  224 GGDAAPSVTALKFR-DDGLHVAVGTSTGSVLIYDLRASKPL-LVKDHGYELPIKKLDWQDTDQ----QNKVVSMD-KRIL  296 (703)
T ss_pred             cccccCcceEEEec-CCceeEEeeccCCcEEEEEcccCCce-eecccCCccceeeecccccCC----CceEEecc-hHHh
Confidence            11233459999999 78999999999999999999976542 222334567899999988732    45666654 6789


Q ss_pred             EEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcc
Q psy17342        295 KLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA  350 (401)
Q Consensus       295 ~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  350 (401)
                      +|||-.+|++...+.. ...++.+|+-|++. ++.++-.+..+..|-+..-.+.+.
T Consensus       297 kiWd~~~Gk~~asiEp-t~~lND~C~~p~sG-m~f~Ane~~~m~~yyiP~LGPaPr  350 (703)
T KOG2321|consen  297 KIWDECTGKPMASIEP-TSDLNDFCFVPGSG-MFFTANESSKMHTYYIPSLGPAPR  350 (703)
T ss_pred             hhcccccCCceeeccc-cCCcCceeeecCCc-eEEEecCCCcceeEEccccCCCch
Confidence            9999999999998887 56699999999987 888888888888887766555444

>KOG1310|consensus

Probab=99.76  E-value=1.7e-17  Score=141.22  Aligned_cols=216  Identities=20%  Similarity=0.235  Sum_probs=159.8

Q ss_pred             cccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCC-CCeEEEEcC
Q psy17342        162 SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQND-VNNFVVGCE  240 (401)
Q Consensus       162 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~  240 (401)
                      .+.+|.+-|+++.|  +.+|.+|++||.|-.+.|||.-. .++...+      ..+|...|.++.|-|.. ..++++|..
T Consensus        45 eL~GH~GCVN~LeW--n~dG~lL~SGSDD~r~ivWd~~~-~KllhsI------~TgHtaNIFsvKFvP~tnnriv~sgAg  115 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEW--NADGELLASGSDDTRLIVWDPFE-YKLLHSI------STGHTANIFSVKFVPYTNNRIVLSGAG  115 (758)
T ss_pred             hhccccceecceee--cCCCCEEeecCCcceEEeecchh-cceeeee------ecccccceeEEeeeccCCCeEEEeccC
Confidence            35799999999999  99999999999999999999853 2222221      45699999999999754 456788999


Q ss_pred             CceEEEEeCCCCC--------CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCce-------
Q psy17342        241 DGNVYSACRHGNK--------AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPV-------  305 (401)
Q Consensus       241 d~~i~~~~~~~~~--------~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-------  305 (401)
                      |..|+++|+...+        ......+..|...|..++..|..     ...|.++++||+|+-+|++....-       
T Consensus       116 Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-----PhtfwsasEDGtirQyDiREph~c~p~~~~~  190 (758)
T KOG1310|consen  116 DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-----PHTFWSASEDGTIRQYDIREPHVCNPDEDCP  190 (758)
T ss_pred             cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCC-----CceEEEecCCcceeeecccCCccCCcccccc
Confidence            9999999997422        22455677899999999999985     689999999999999999873211       


Q ss_pred             ---EEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC--------C---c----ceEEee-cC---------
Q psy17342        306 ---HSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE--------V---P----ATSAIV-EG---------  357 (401)
Q Consensus       306 ---~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~---~----~~~~~~-~~---------  357 (401)
                         ..+....-...++..+|..+++|+.|+.|-..++||.+...+        .   +    ...... +|         
T Consensus       191 ~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~  270 (758)
T KOG1310|consen  191 SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD  270 (758)
T ss_pred             HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence               111112234678999999999999999999999999532110        0   0    000000 11         


Q ss_pred             --CCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        358 --APALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       358 --~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                        ...++.+.|+|+|.-|.+.-....|+++|+..++
T Consensus       271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~  306 (758)
T KOG1310|consen  271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK  306 (758)
T ss_pred             cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence              1126788999999766665555579999998875

>KOG1310|consensus

Probab=99.76  E-value=4.3e-17  Score=138.81  Aligned_cols=256  Identities=16%  Similarity=0.204  Sum_probs=170.7

Q ss_pred             ccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCC-CceEEEEec
Q psy17342         61 KWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFN-PYLILGGTY  139 (401)
Q Consensus        61 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~g~~  139 (401)
                      ..+|.+.|.|++|+.+|.+|++|+          .|-.+.|||.-..+.+..+..+|...|.++.|-|.. ..++++|..
T Consensus        46 L~GH~GCVN~LeWn~dG~lL~SGS----------DD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAg  115 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGELLASGS----------DDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAG  115 (758)
T ss_pred             hccccceecceeecCCCCEEeecC----------CcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccC
Confidence            346889999999999999999999          899999999988888888888899999999999954 358889999


Q ss_pred             CCeEEEEECCCCCCCc----eeeccccccCCCCcEEEEEEeecCCc-eEEEEEeCCCcEEEeeccCCCCCcccccccc--
Q psy17342        140 SGQIVLWDTRVQKKTP----VHRTPLSVMAHTHPVFCMSVIGTQNA-HNLISISNDGRLCSWSLEMLSSPQETRDLQY--  212 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--  212 (401)
                      |..|+++|+...+...    ..........|...|..++.  .|++ +.+.++++||+++-+|++.............  
T Consensus       116 Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~--~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l  193 (758)
T KOG1310|consen  116 DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIAT--APNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL  193 (758)
T ss_pred             cceEEEEecccccccccccCccchhhhhhhhhhhhhheec--CCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence            9999999998532211    11111235688999999987  6776 7899999999999999986333222211110  


Q ss_pred             ccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC
Q psy17342        213 NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW  292 (401)
Q Consensus       213 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~  292 (401)
                      ....+..-...|+.++|.+..+|++|+.+-..++||.+..    +..+.....    ...+|... ...-++++-+..  
T Consensus       194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~----lks~~s~~~----~~~~pp~~-~~cv~yf~p~hl--  262 (758)
T KOG1310|consen  194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRV----LKSFRSDGT----MNTCPPKD-CRCVRYFSPGHL--  262 (758)
T ss_pred             HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhh----ccCCCCCcc----ccCCCCcc-cchhheecCccc--
Confidence            0022234567899999889999999999999999996522    122221100    11111100 000012221110  


Q ss_pred             eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCc
Q psy17342        293 SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVP  349 (401)
Q Consensus       293 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  349 (401)
                        +   ...+.    +...-..++-++|+|+|..+|++-+. ..|+++|+..++...
T Consensus       263 --k---n~~gn----~~~~~~~~t~vtfnpNGtElLvs~~g-EhVYlfdvn~~~~~~  309 (758)
T KOG1310|consen  263 --K---NSQGN----LDRYITCCTYVTFNPNGTELLVSWGG-EHVYLFDVNEDKSPT  309 (758)
T ss_pred             --c---Ccccc----cccceeeeEEEEECCCCcEEEEeeCC-eEEEEEeecCCCCce
Confidence              0   00010    11111235678999999877777654 489999998776543

>KOG4497|consensus

Probab=99.76  E-value=1.6e-16  Score=127.13  Aligned_cols=276  Identities=14%  Similarity=0.114  Sum_probs=189.5

Q ss_pred             EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECC
Q psy17342         70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTR  149 (401)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~  149 (401)
                      -.+|||+|+++|++.           +..+.|-|..+-+..+.+  ..-..|.-+.|..+...+|.....++.|.+|++.
T Consensus        13 ~c~fSp~g~yiAs~~-----------~yrlviRd~~tlq~~qlf--~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~   79 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLS-----------RYRLVIRDSETLQLHQLF--LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLV   79 (447)
T ss_pred             ceeECCCCCeeeeee-----------eeEEEEeccchhhHHHHH--HHHHHhhheeeeccceeeeeeeeccceEEEEEee
Confidence            367999999999999           668999998876554433  2246788899999887788888899999999998


Q ss_pred             CCCCCceeeccccccCCCCcEEEEEEeecCCceEEE-EEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEec
Q psy17342        150 VQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLI-SISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFP  228 (401)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  228 (401)
                      ..+-.      ..+......+.+++|  +|+|+.++ +..-+-+|.+|.+.+..    ..-++.     .+..+..++|+
T Consensus        80 Qpew~------ckIdeg~agls~~~W--SPdgrhiL~tseF~lriTVWSL~t~~----~~~~~~-----pK~~~kg~~f~  142 (447)
T KOG4497|consen   80 QPEWY------CKIDEGQAGLSSISW--SPDGRHILLTSEFDLRITVWSLNTQK----GYLLPH-----PKTNVKGYAFH  142 (447)
T ss_pred             cceeE------EEeccCCCcceeeeE--CCCcceEeeeecceeEEEEEEeccce----eEEecc-----cccCceeEEEC
Confidence            77644      334677788999999  99995554 55568899999997521    122222     33456777888


Q ss_pred             cCCCCeEEEEcCCc------------------------------------eEEEEeCCCCCCCceeeecCCCCceeeeec
Q psy17342        229 QNDVNNFVVGCEDG------------------------------------NVYSACRHGNKAGNVECYEGHEGPVVGLSS  272 (401)
Q Consensus       229 ~~~~~~l~~~~~d~------------------------------------~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~  272 (401)
                       +++++.+..+...                                    .+.+||.--. . .+..+. -.-.+..++|
T Consensus       143 -~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le-y-kv~aYe-~~lG~k~v~w  218 (447)
T KOG4497|consen  143 -PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE-Y-KVYAYE-RGLGLKFVEW  218 (447)
T ss_pred             -CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh-h-eeeeee-eccceeEEEe
Confidence             7777766654321                                    1223332100 0 011111 1246788999


Q ss_pred             CccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc------------------------------------------------
Q psy17342        273 HRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP------------------------------------------------  304 (401)
Q Consensus       273 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------------------------------------------  304 (401)
                      +|.      +++++.|+.|+.+||.+--+-++                                                
T Consensus       219 sP~------~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~s  292 (447)
T KOG4497|consen  219 SPC------NQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEES  292 (447)
T ss_pred             ccc------cceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccc
Confidence            998      79999999999999866433210                                                


Q ss_pred             ------------eEEEe------ecCCceEEEEECCCCCcEEEEEec--CCEEEEEeCCCCCCCcceEEeecCCCCeEEE
Q psy17342        305 ------------VHSFN------EFRDYVMDVQWSPINPALFATVEV--AGRVDLWNLNLDTEVPATSAIVEGAPALSRV  364 (401)
Q Consensus       305 ------------~~~~~------~~~~~v~~v~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  364 (401)
                                  +..++      .....+.-++|++|.. ++++-..  -+.+.+||++..+....+.    ...+|...
T Consensus       293 e~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~-y~aTrnd~~PnalW~Wdlq~l~l~avLi----Qk~piraf  367 (447)
T KOG4497|consen  293 ETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDST-YAATRNDKYPNALWLWDLQNLKLHAVLI----QKHPIRAF  367 (447)
T ss_pred             hhhhhhhhcceeeecccCCCCCCCcccccceeeecCCce-EEeeecCCCCceEEEEechhhhhhhhhh----hccceeEE
Confidence                        00011      1123466789999985 6665432  2579999999876655542    35679999


Q ss_pred             EecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        365 TWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       365 ~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      .|+|....|+.+.....+++|.....
T Consensus       368 ~WdP~~prL~vctg~srLY~W~psg~  393 (447)
T KOG4497|consen  368 EWDPGRPRLVVCTGKSRLYFWAPSGP  393 (447)
T ss_pred             EeCCCCceEEEEcCCceEEEEcCCCc
Confidence            99999998988888888999987653

>KOG1334|consensus

Probab=99.75  E-value=1.9e-17  Score=138.88  Aligned_cols=290  Identities=14%  Similarity=0.166  Sum_probs=210.0

Q ss_pred             hhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCC--CCCeEE
Q psy17342          5 EAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQ--HPELLL   82 (401)
Q Consensus         5 ~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~   82 (401)
                      ..|..++||+.|-.+-+||+......      +.|.                     -+|...|....|-|.  .+.+++
T Consensus       152 ~~Gd~l~SgSDD~~vv~WdW~~~~~~------l~f~---------------------SGH~~NvfQaKFiP~s~d~ti~~  204 (559)
T KOG1334|consen  152 QRGDVLASGSDDLQVVVWDWVSGSPK------LSFE---------------------SGHCNNVFQAKFIPFSGDRTIVT  204 (559)
T ss_pred             ccCceeeccCccceEEeehhhccCcc------cccc---------------------cccccchhhhhccCCCCCcCcee
Confidence            46788999999999999999877632      1111                     135555666667664  345777


Q ss_pred             EEeccCCCCCCCCCcEEEEEeCcC-CCCC-ceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecc
Q psy17342         83 ASYHRNKEAPNEPDGVCLIWNTKF-KKTT-PEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP  160 (401)
Q Consensus        83 ~~~~~~~~~~~~~d~~v~iwd~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~  160 (401)
                      ++          .||.|++=.+.. +... ......|.++|..++.-|+.++-|.+++.|+.+.-.|++.........  
T Consensus       205 ~s----------~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~--  272 (559)
T KOG1334|consen  205 SS----------RDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV--  272 (559)
T ss_pred             cc----------ccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee--
Confidence            77          799999987653 3322 334556899999999999999999999999999999998766433221  


Q ss_pred             ccccCCCC---cEEEEEEeecCCc-eEEEEEeCCCcEEEeeccCCCCCcccccc----ccccccCCccceEEEEeccCCC
Q psy17342        161 LSVMAHTH---PVFCMSVIGTQNA-HNLISISNDGRLCSWSLEMLSSPQETRDL----QYNNKQTKNLAVLSLAFPQNDV  232 (401)
Q Consensus       161 ~~~~~~~~---~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~  232 (401)
                       .-..+..   ....++.  .|.. ..+++++.|..+++||.+..........+    +..-.......|++++|+ .++
T Consensus       273 -cr~~~~~~~v~L~~Ia~--~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys-h~~  348 (559)
T KOG1334|consen  273 -CREADEKERVGLYTIAV--DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS-HDG  348 (559)
T ss_pred             -eeccCCccceeeeeEec--CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEec-CCc
Confidence             1122222   4566776  5544 48999999999999998764322111100    110011345679999999 888


Q ss_pred             CeEEEEcCCceEEEEeCCCCCC----------Cceee-ecCCCC--ceeeeecC-ccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        233 NNFVVGCEDGNVYSACRHGNKA----------GNVEC-YEGHEG--PVVGLSSH-RAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       233 ~~l~~~~~d~~i~~~~~~~~~~----------~~~~~-~~~~~~--~v~~i~~~-~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      .-++++..|-.|+++......+          ..+.. +++|..  .|..+-|- |.      .+++++|+.-|.|.||+
T Consensus       349 sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPr------sEyVvSGSDCGhIFiW~  422 (559)
T KOG1334|consen  349 SELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPR------SEYVVSGSDCGHIFIWD  422 (559)
T ss_pred             cceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCc------cceEEecCccceEEEEe
Confidence            8889999999999996543222          22333 778865  36666554 44      68999999999999999


Q ss_pred             eeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        299 IKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      -.+++.+..+.+-..-|+|+.-+|.-+ +||+++-|..|+||-..+
T Consensus       423 K~t~eii~~MegDr~VVNCLEpHP~~P-vLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  423 KKTGEIIRFMEGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             cchhHHHHHhhcccceEeccCCCCCCc-hhhccCCccceeeecCCc
Confidence            999999998888666899999999998 899999999999998744

>KOG2394|consensus

Probab=99.74  E-value=2.7e-16  Score=133.59  Aligned_cols=255  Identities=14%  Similarity=0.168  Sum_probs=174.1

Q ss_pred             CeeEEEEeCCCCceEEEEecCCeEEEEECCCCCC--CceeeccccccCCCCcEEEEEE---eecCCceEEEEEeCCCcEE
Q psy17342        120 PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKK--TPVHRTPLSVMAHTHPVFCMSV---IGTQNAHNLISISNDGRLC  194 (401)
Q Consensus       120 ~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~l~s~~~dg~i~  194 (401)
                      .+....++-.+.++.+--  ...+.+|+.+....  .++.+.  .+.+..  -.|-+|   ...+.+--++.+-.-|.+.
T Consensus       125 ~~~~~~~~~~gd~lcFnv--g~~lyv~~~~g~~~~~~pi~k~--~y~gt~--P~cHdfn~~~a~~~g~dllIGf~tGqvq  198 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNV--GRELYVYSYRGAADLSKPIDKR--EYKGTS--PTCHDFNSFTATPKGLDLLIGFTTGQVQ  198 (636)
T ss_pred             ceeeccccCCCCEEEEec--CCeEEEEEccCcchhccchhhh--cccCCC--CceecccccccCCCCcceEEeeccCceE
Confidence            344555555454343332  35688998885322  222211  111111  112222   1145677788888889999


Q ss_pred             EeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCC--------------------
Q psy17342        195 SWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKA--------------------  254 (401)
Q Consensus       195 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--------------------  254 (401)
                      +.|...    ....++......-.+..|+|+.|-|.+...++++-.+|.+++||....-.                    
T Consensus       199 ~idp~~----~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~  274 (636)
T KOG2394|consen  199 LIDPIN----FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTS  274 (636)
T ss_pred             Eecchh----hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeee
Confidence            998764    11111111112234578999999988889999999999999997632110                    


Q ss_pred             ------CceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEE
Q psy17342        255 ------GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALF  328 (401)
Q Consensus       255 ------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l  328 (401)
                            .++..+.--.+.|+..+|+|+      +.+||+.+.||.+||||+.+.+.+..++..-+...||+|||||+ ++
T Consensus       275 ksk~~rNPv~~w~~~~g~in~f~FS~D------G~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGK-yI  347 (636)
T KOG2394|consen  275 KSKKTRNPVARWHIGEGSINEFAFSPD------GKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGK-YI  347 (636)
T ss_pred             eccccCCccceeEeccccccceeEcCC------CceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCcc-EE
Confidence                  011122223457888999997      89999999999999999999888877777677899999999998 89


Q ss_pred             EEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC-----------------------------------C---
Q psy17342        329 ATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN-----------------------------------G---  370 (401)
Q Consensus       329 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----------------------------------g---  370 (401)
                      ++|++|.-|.||.+...+.+..-   .+|...|+.++|.|-                                   +   
T Consensus       348 vtGGEDDLVtVwSf~erRVVARG---qGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~  424 (636)
T KOG2394|consen  348 VTGGEDDLVTVWSFEERRVVARG---QGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPL  424 (636)
T ss_pred             EecCCcceEEEEEeccceEEEec---cccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcc
Confidence            99999999999999987655443   478899999999830                                   1   


Q ss_pred             ----------cEEEEEecCCcEEEEEeccCccce
Q psy17342        371 ----------TQLCVGDEKGAITMFDVGEVGIAC  394 (401)
Q Consensus       371 ----------~~l~~~~~dg~v~iw~~~~~~~~~  394 (401)
                                ..+.+.+.|-.+.+||+....+..
T Consensus       425 s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~  458 (636)
T KOG2394|consen  425 SSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP  458 (636)
T ss_pred             cccccccceEEEeecccccceEEEEecchhhccc
Confidence                      246678889999999998765433

>KOG1409|consensus

Probab=99.73  E-value=9.4e-16  Score=123.42  Aligned_cols=248  Identities=16%  Similarity=0.225  Sum_probs=182.8

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeC-cCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNT-KFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG  141 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg  141 (401)
                      ++.+.|++...-|..+-+++++          .|.+++||-- +.++.-+.+...-+.+++++.+.++. ..|++|-.+|
T Consensus        22 G~~d~vn~~~l~~~e~gv~~~s----------~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-~~L~vg~~ng   90 (404)
T KOG1409|consen   22 GSQDDVNAAILIPKEEGVISVS----------EDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-RRLYVGQDNG   90 (404)
T ss_pred             CchhhhhhheeccCCCCeEEcc----------ccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-eEEEEEEecc
Confidence            4667788888888888999999          8999999964 44666665555558899999999965 7889999999


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccc
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA  221 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  221 (401)
                      ++.-+.+...-....  .+.....|...+..+-|  +.....+++.+.|..+.---.+. +.......+.        ..
T Consensus        91 tvtefs~sedfnkm~--~~r~~~~h~~~v~~~if--~~~~e~V~s~~~dk~~~~hc~e~-~~~lg~Y~~~--------~~  157 (404)
T KOG1409|consen   91 TVTEFALSEDFNKMT--FLKDYLAHQARVSAIVF--SLTHEWVLSTGKDKQFAWHCTES-GNRLGGYNFE--------TP  157 (404)
T ss_pred             eEEEEEhhhhhhhcc--hhhhhhhhhcceeeEEe--cCCceeEEEeccccceEEEeecc-CCcccceEee--------cc
Confidence            999987754322211  11234689999999998  77888999999997765433332 2211111111        11


Q ss_pred             eEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342        222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE  301 (401)
Q Consensus       222 v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  301 (401)
                      .+++.+.   -.+..+|...|.|....+......++.++.+|.+++++++|.|.      ..++.+|..|..+.+||+.-
T Consensus       158 ~t~~~~d---~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~------~~~LfSg~~d~~vi~wdigg  228 (404)
T KOG1409|consen  158 ASALQFD---ALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG------QRLLFSGASDHSVIMWDIGG  228 (404)
T ss_pred             CCCCcee---eEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC------CcEEEeccccCceEEEeccC
Confidence            1122222   12556677778887777666667788999999999999999998      68999999999999999965


Q ss_pred             CC-ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        302 NK-PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       302 ~~-~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      .+ ...++.+|...|..+...+.-+ .+.+++.||.|.+|+++.
T Consensus       229 ~~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  229 RKGTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             Ccceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccc
Confidence            43 3456778999999998888776 688899999999999864

>KOG0771|consensus

Probab=99.73  E-value=3e-15  Score=123.79  Aligned_cols=202  Identities=10%  Similarity=0.067  Sum_probs=144.0

Q ss_pred             EEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCC
Q psy17342        171 FCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRH  250 (401)
Q Consensus       171 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~  250 (401)
                      ..++|  +.++..+++++.||++++|+......   ...     ...|...|.++.|+ +|++.|++-+.| ..++|+.+
T Consensus       148 k~vaf--~~~gs~latgg~dg~lRv~~~Ps~~t---~l~-----e~~~~~eV~DL~FS-~dgk~lasig~d-~~~VW~~~  215 (398)
T KOG0771|consen  148 KVVAF--NGDGSKLATGGTDGTLRVWEWPSMLT---ILE-----EIAHHAEVKDLDFS-PDGKFLASIGAD-SARVWSVN  215 (398)
T ss_pred             eEEEE--cCCCCEeeeccccceEEEEecCcchh---hhh-----hHhhcCccccceeC-CCCcEEEEecCC-ceEEEEec
Confidence            56777  89999999999999999999653221   111     23378899999999 899999999999 99999988


Q ss_pred             CCCCCceeeec--CCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc-----eEEEeecCCceEEEEECCC
Q psy17342        251 GNKAGNVECYE--GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP-----VHSFNEFRDYVMDVQWSPI  323 (401)
Q Consensus       251 ~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~v~~v~~~~~  323 (401)
                      ...  .+....  .-......+.|..+... +.-.+++....-+.|+.||+...+-     ..+.......|.+++.+++
T Consensus       216 ~g~--~~a~~t~~~k~~~~~~cRF~~d~~~-~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~d  292 (398)
T KOG0771|consen  216 TGA--ALARKTPFSKDEMFSSCRFSVDNAQ-ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDD  292 (398)
T ss_pred             cCc--hhhhcCCcccchhhhhceecccCCC-ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCC
Confidence            542  222222  22233455666655211 1012233333356677777654221     1111122347999999999


Q ss_pred             CCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        324 NPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       324 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      |+ ++|.|+.||.|-|++..+-+.+...+  ..|...|+.+.|+||.+++++-+.+....|..+.-.
T Consensus       293 Gk-f~AlGT~dGsVai~~~~~lq~~~~vk--~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  293 GK-FLALGTMDGSVAIYDAKSLQRLQYVK--EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             Cc-EEEEeccCCcEEEEEeceeeeeEeeh--hhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence            98 89999999999999998776554443  467789999999999999999999999999988763

>KOG0771|consensus

Probab=99.73  E-value=2.1e-16  Score=130.48  Aligned_cols=199  Identities=16%  Similarity=0.156  Sum_probs=147.4

Q ss_pred             eEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCC
Q psy17342        122 LSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEML  201 (401)
Q Consensus       122 ~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~  201 (401)
                      .+++|++++ ..+++|+.||.+|||++.+....      +....|...|.++.|  +|++..|++.+.| ..++|+.+++
T Consensus       148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~------l~e~~~~~eV~DL~F--S~dgk~lasig~d-~~~VW~~~~g  217 (398)
T KOG0771|consen  148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTI------LEEIAHHAEVKDLDF--SPDGKFLASIGAD-SARVWSVNTG  217 (398)
T ss_pred             eEEEEcCCC-CEeeeccccceEEEEecCcchhh------hhhHhhcCcccccee--CCCCcEEEEecCC-ceEEEEeccC
Confidence            789999977 79999999999999998766543      445789999999999  9999999999999 9999999875


Q ss_pred             CCCccccccccccccCCccceEEEEeccCCC---C--eEEEEcCCceEEEEeCCCCCCC---ceeeecCCCCceeeeecC
Q psy17342        202 SSPQETRDLQYNNKQTKNLAVLSLAFPQNDV---N--NFVVGCEDGNVYSACRHGNKAG---NVECYEGHEGPVVGLSSH  273 (401)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~--~l~~~~~d~~i~~~~~~~~~~~---~~~~~~~~~~~v~~i~~~  273 (401)
                      ...... .     ..........+.|+ .++   .  .++....-+.|+.|++......   .......-...|++++++
T Consensus       218 ~~~a~~-t-----~~~k~~~~~~cRF~-~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS  290 (398)
T KOG0771|consen  218 AALARK-T-----PFSKDEMFSSCRFS-VDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS  290 (398)
T ss_pred             chhhhc-C-----Ccccchhhhhceec-ccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc
Confidence            221111 1     01233445566666 444   2  2333344555666655432221   112222234579999999


Q ss_pred             ccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEe-ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        274 RAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       274 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      ++      +++++.|+.||.|.|++..+-+.++..+ .|...|+.+.|+|+.+ .+++.+.|....+..+.-
T Consensus       291 ~d------Gkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr-~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  291 DD------GKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSR-YLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CC------CcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcC-cccccccCCceeEEEEee
Confidence            99      8999999999999999998877776654 5999999999999997 688888898888887765

>KOG2111|consensus

Probab=99.73  E-value=7.9e-15  Score=116.98  Aligned_cols=242  Identities=15%  Similarity=0.171  Sum_probs=157.8

Q ss_pred             CeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEE-EEeCC------Cc
Q psy17342        120 PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLI-SISND------GR  192 (401)
Q Consensus       120 ~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d------g~  192 (401)
                      ...+++|+.|. ..+++|..+| .+||+.+--......    ......-.+.-+-|    ..++++ .|+.+      ..
T Consensus         7 ~~lsvs~NQD~-ScFava~~~G-friyn~~P~ke~~~r----~~~~~G~~~veMLf----R~N~laLVGGg~~pky~pNk   76 (346)
T KOG2111|consen    7 KTLSVSFNQDH-SCFAVATDTG-FRIYNCDPFKESASR----QFIDGGFKIVEMLF----RSNYLALVGGGSRPKYPPNK   76 (346)
T ss_pred             ceeEEEEccCC-ceEEEEecCc-eEEEecCchhhhhhh----ccccCchhhhhHhh----hhceEEEecCCCCCCCCCce
Confidence            45569999976 6788886555 899998753321110    00111112222223    222333 33333      46


Q ss_pred             EEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeec
Q psy17342        193 LCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSS  272 (401)
Q Consensus       193 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~  272 (401)
                      |.+||=.. ..+.....        ...+|.++.+.   ...|++. ..+.|++|....+. +.++.+.....|---++.
T Consensus        77 viIWDD~k-~~~i~el~--------f~~~I~~V~l~---r~riVvv-l~~~I~VytF~~n~-k~l~~~et~~NPkGlC~~  142 (346)
T KOG2111|consen   77 VIIWDDLK-ERCIIELS--------FNSEIKAVKLR---RDRIVVV-LENKIYVYTFPDNP-KLLHVIETRSNPKGLCSL  142 (346)
T ss_pred             EEEEeccc-CcEEEEEE--------eccceeeEEEc---CCeEEEE-ecCeEEEEEcCCCh-hheeeeecccCCCceEee
Confidence            99999321 22222222        34589999987   2444444 35789999886432 234444322222112334


Q ss_pred             CccCCCCCCCcEEEEEe-CCCeEEEEEeeCCCc--eEEEeecCCceEEEEECCCCCcEEEEEecCCE-EEEEeCCCCCCC
Q psy17342        273 HRAQGHIDFSHLYLTSS-YDWSVKLWNIKENKP--VHSFNEFRDYVMDVQWSPINPALFATVEVAGR-VDLWNLNLDTEV  348 (401)
Q Consensus       273 ~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~--~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~  348 (401)
                      .|...    ..+||.-+ .-|.|.|-|+...+.  -..+.+|...|.+++.+-+|. ++|++|..|+ |||||..+++.+
T Consensus       143 ~~~~~----k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l  217 (346)
T KOG2111|consen  143 CPTSN----KSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLL  217 (346)
T ss_pred             cCCCC----ceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEe
Confidence            44321    34555544 468999999987655  477889999999999999996 8999999986 899999999988


Q ss_pred             cceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        349 PATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       349 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      ..++.-. ....|.+++|||+..+||++++.|+|+|+.++...
T Consensus       218 ~E~RRG~-d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  218 QELRRGV-DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             eeeecCC-chheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            8876422 25679999999999999999999999999998753

>KOG1524|consensus

Probab=99.72  E-value=7.7e-16  Score=130.90  Aligned_cols=237  Identities=14%  Similarity=0.169  Sum_probs=162.0

Q ss_pred             ecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccc---cCCCCcEEEEEEeecCCceEEEEEeCCCc
Q psy17342        116 FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSV---MAHTHPVFCMSVIGTQNAHNLISISNDGR  192 (401)
Q Consensus       116 ~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~  192 (401)
                      .|...+.++.|+... ..+.++ .|..+.+|.-.......+...+-.+   ..|   +....-......+.|+.++.||.
T Consensus        12 r~~e~vc~v~w~~~e-ei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h---~~~rs~~~g~~~d~~~i~s~DGk   86 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNE-EIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMH---LGGRSSGGGKGSDTLLICSNDGR   86 (737)
T ss_pred             ccceeEEeecccccc-eEEEec-cCceEEEeecccchhhhhhhCCcccCCcccc---ccccccCCCCCcceEEEEcCCce
Confidence            345566799998754 455555 4666666544333222221111111   122   11111111223457899999999


Q ss_pred             EEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeec
Q psy17342        193 LCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSS  272 (401)
Q Consensus       193 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~  272 (401)
                      +.+.+-.  ++....       ...|...+.+-.|+ +++.-|+++++||.|++|...+.   +..++.....+|+|++|
T Consensus        87 f~il~k~--~rVE~s-------v~AH~~A~~~gRW~-~dGtgLlt~GEDG~iKiWSrsGM---LRStl~Q~~~~v~c~~W  153 (737)
T KOG1524|consen   87 FVILNKS--ARVERS-------ISAHAAAISSGRWS-PDGAGLLTAGEDGVIKIWSRSGM---LRSTVVQNEESIRCARW  153 (737)
T ss_pred             EEEeccc--chhhhh-------hhhhhhhhhhcccC-CCCceeeeecCCceEEEEeccch---HHHHHhhcCceeEEEEE
Confidence            9987643  222222       23488999999999 89999999999999999987643   33345556789999999


Q ss_pred             CccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceE
Q psy17342        273 HRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATS  352 (401)
Q Consensus       273 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  352 (401)
                      .|+.     .+.+.+.  .+.+.|=.+.....+..++.|.+-|.++.|+|... ++++|++|-..+|||-.......   
T Consensus       154 ~p~S-----~~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~G~~Lf~---  222 (737)
T KOG1524|consen  154 APNS-----NSIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQGANLFT---  222 (737)
T ss_pred             CCCC-----CceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCcccc-ceeecCCceeEEeecccCccccc---
Confidence            9995     4555544  35677777777777778999999999999999997 99999999999999987533222   


Q ss_pred             EeecCCCCeEEEEecCCCcEEEEEecCCcEEE
Q psy17342        353 AIVEGAPALSRVTWTPNGTQLCVGDEKGAITM  384 (401)
Q Consensus       353 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~i  384 (401)
                       ...|..+|++++|+|+ +.++.++.. ++++
T Consensus       223 -S~~~ey~ITSva~npd-~~~~v~S~n-t~R~  251 (737)
T KOG1524|consen  223 -SAAEEYAITSVAFNPE-KDYLLWSYN-TARF  251 (737)
T ss_pred             -CChhccceeeeeeccc-cceeeeeee-eeee
Confidence             2467889999999999 666666653 3443

>KOG4497|consensus

Probab=99.72  E-value=4e-15  Score=119.22  Aligned_cols=275  Identities=14%  Similarity=0.194  Sum_probs=184.8

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      +.|..+.|..|.-+++.+.|         .++.|.+|++...+-...+ -....++.+++|||+|..+|.+...+-.|.+
T Consensus        49 dki~yieW~ads~~ilC~~y---------k~~~vqvwsl~Qpew~ckI-deg~agls~~~WSPdgrhiL~tseF~lriTV  118 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAY---------KDPKVQVWSLVQPEWYCKI-DEGQAGLSSISWSPDGRHILLTSEFDLRITV  118 (447)
T ss_pred             HHhhheeeeccceeeeeeee---------ccceEEEEEeecceeEEEe-ccCCCcceeeeECCCcceEeeeecceeEEEE
Confidence            56889999999999999987         8999999999854433322 2347789999999999889999989999999


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC----------------------------------
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG----------------------------------  191 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----------------------------------  191 (401)
                      |.+.+.....+       .-....+..++|  +++|++.+.+++..                                  
T Consensus       119 WSL~t~~~~~~-------~~pK~~~kg~~f--~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd  189 (447)
T KOG4497|consen  119 WSLNTQKGYLL-------PHPKTNVKGYAF--HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD  189 (447)
T ss_pred             EEeccceeEEe-------cccccCceeEEE--CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC
Confidence            99988764321       223344567777  78887766655421                                  


Q ss_pred             --cEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCC-------------C--
Q psy17342        192 --RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK-------------A--  254 (401)
Q Consensus       192 --~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-------------~--  254 (401)
                        .+-+||---     ....+    .....-.+..++|+ |.++++++|+.|+.+|+.+--.-+             .  
T Consensus       190 g~~laVwd~~L-----eykv~----aYe~~lG~k~v~ws-P~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~  259 (447)
T KOG4497|consen  190 GNWLAVWDNVL-----EYKVY----AYERGLGLKFVEWS-PCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTL  259 (447)
T ss_pred             CcEEEEecchh-----hheee----eeeeccceeEEEec-cccceEEeeccchhhhhhceeeeeehhhhccchhccCchh
Confidence              122232110     00000    01133578899999 889999999999999874321100             0  


Q ss_pred             --------Cc-----------------------------------eeeec------CCCCceeeeecCccCCCCCCCcEE
Q psy17342        255 --------GN-----------------------------------VECYE------GHEGPVVGLSSHRAQGHIDFSHLY  285 (401)
Q Consensus       255 --------~~-----------------------------------~~~~~------~~~~~v~~i~~~~~~~~~~~~~~l  285 (401)
                              +.                                   +..++      ...-.+.-++|+++      +.++
T Consensus       260 ~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D------s~y~  333 (447)
T KOG4497|consen  260 HLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD------STYA  333 (447)
T ss_pred             hhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCC------ceEE
Confidence                    00                                   00000      01123455778877      5677


Q ss_pred             EEEeC--CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEE
Q psy17342        286 LTSSY--DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSR  363 (401)
Q Consensus       286 ~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  363 (401)
                      +|-..  -..+-+||++..+....+.. ..+|....|+|..+.+ +.+.....+++|.......+..    ....-.|..
T Consensus       334 aTrnd~~PnalW~Wdlq~l~l~avLiQ-k~piraf~WdP~~prL-~vctg~srLY~W~psg~~~V~v----P~~GF~i~~  407 (447)
T KOG4497|consen  334 ATRNDKYPNALWLWDLQNLKLHAVLIQ-KHPIRAFEWDPGRPRL-VVCTGKSRLYFWAPSGPRVVGV----PKKGFNIQK  407 (447)
T ss_pred             eeecCCCCceEEEEechhhhhhhhhhh-ccceeEEEeCCCCceE-EEEcCCceEEEEcCCCceEEec----CCCCceeee
Confidence            76653  35699999987765554443 6789999999999854 4444466899998875333222    123467999


Q ss_pred             EEecCCCcEEEEEecCCc
Q psy17342        364 VTWTPNGTQLCVGDEKGA  381 (401)
Q Consensus       364 ~~~s~~g~~l~~~~~dg~  381 (401)
                      +.|..+|..++..+.|-.
T Consensus       408 l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  408 LQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             EEecCCCcEEEEEcCCce
Confidence            999999999999998863

>KOG0280|consensus

Probab=99.72  E-value=7.5e-15  Score=115.84  Aligned_cols=307  Identities=13%  Similarity=0.098  Sum_probs=199.1

Q ss_pred             eEEEEecCCCCCeEEEEeccCCCC-CC-CCCcEEEEEeCcCCCCCceEE--EecCCCeeEEEEeC--CCCc-eEEEEecC
Q psy17342         68 VTYMDWSTQHPELLLASYHRNKEA-PN-EPDGVCLIWNTKFKKTTPEFE--FFCQSPVLSCCFAK--FNPY-LILGGTYS  140 (401)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~~~-~~-~~d~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~--~~~~-~l~~g~~d  140 (401)
                      +.+++-.++  .|++|+|.--... +. -..|.+.+|++...+..+.-.  -...+.+..+.|.-  .+.. .++-+...
T Consensus        17 ~C~l~~~~~--vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~   94 (339)
T KOG0280|consen   17 ICCLCHTRN--VLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHAR   94 (339)
T ss_pred             ccccccccc--eEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeecccc
Confidence            444443333  6777765321110 00 156899999998776666222  22456788888873  2223 56667788


Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      |.|.++...........+..-...-......++.|  ++.+..++++-.+|.+.+-+... .....   .+.  .+.|..
T Consensus        95 G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~--~~~~~~i~vs~s~G~~~~v~~t~-~~le~---vq~--wk~He~  166 (339)
T KOG0280|consen   95 GQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDI--STSGTKIFVSDSRGSISGVYETE-MVLEK---VQT--WKVHEF  166 (339)
T ss_pred             ceEEEEeeccceeeeeecccchhhhhheeeeEEEe--eccCceEEEEcCCCcEEEEecce-eeeee---ccc--ccccce
Confidence            99999988765543222211000111112446666  88888899999999988554332 11111   111  455889


Q ss_pred             ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEee
Q psy17342        221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIK  300 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  300 (401)
                      +++...|+..+.+.+.+|++|+.+..||++....-....-+.|...|.+|.-+|..     +.++++|+.|..|++||.+
T Consensus       167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~-----~~~I~TGsYDe~i~~~DtR  241 (339)
T KOG0280|consen  167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPK-----PTYIATGSYDECIRVLDTR  241 (339)
T ss_pred             eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCC-----CceEEEeccccceeeeehh
Confidence            99999999777889999999999999999843322233355789999999998875     7899999999999999999


Q ss_pred             C-CCceEEEeecCCceEEEEECCCCCc-EEEEEecCCEEEEEeCCCCCCC--cceEEeecCCCCeEEEEecCCCcEEEEE
Q psy17342        301 E-NKPVHSFNEFRDYVMDVQWSPINPA-LFATVEVAGRVDLWNLNLDTEV--PATSAIVEGAPALSRVTWTPNGTQLCVG  376 (401)
Q Consensus       301 ~-~~~~~~~~~~~~~v~~v~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~~  376 (401)
                      + ++++..-.. .+.|+.+.++|.-.. +++++-..| .+|-+...+...  ..+.....|.+-+..-.|.....+||++
T Consensus       242 nm~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC  319 (339)
T KOG0280|consen  242 NMGKPLFKAKV-GGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC  319 (339)
T ss_pred             cccCccccCcc-ccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeee
Confidence            5 788876655 588999999997432 455554444 777777654433  1222223455556666675555668875


Q ss_pred             e-cCCcEE-EEEeccCc
Q psy17342        377 D-EKGAIT-MFDVGEVG  391 (401)
Q Consensus       377 ~-~dg~v~-iw~~~~~~  391 (401)
                      + .|..++ +|-.-+++
T Consensus       320 sFYDk~~~~~Wl~~t~~  336 (339)
T KOG0280|consen  320 SFYDKKIRQLWLHITGE  336 (339)
T ss_pred             eccccceeeeeeeccCC
Confidence            4 577755 88776653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=1.5e-15  Score=136.49  Aligned_cols=238  Identities=13%  Similarity=0.052  Sum_probs=150.9

Q ss_pred             CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC--CeEEEEECCCCCCCceeeccccccCCCCcEEEE
Q psy17342         96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS--GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCM  173 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  173 (401)
                      +..|.+||.+... . .....+...+.+.+|+|++..++++...+  ..|.+||+.+++....    ..+.+|   ...+
T Consensus       183 ~~~i~i~d~dg~~-~-~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l----~~~~g~---~~~~  253 (429)
T PRK01742        183 PYEVRVADYDGFN-Q-FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV----ASFRGH---NGAP  253 (429)
T ss_pred             eEEEEEECCCCCC-c-eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE----ecCCCc---cCce
Confidence            5799999997443 2 33345577899999999985444443222  4699999987653222    112233   3357


Q ss_pred             EEeecCCceEEEEEe-CCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc-CCceEEEEeCCC
Q psy17342        174 SVIGTQNAHNLISIS-NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-EDGNVYSACRHG  251 (401)
Q Consensus       174 ~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~~~~~~  251 (401)
                      +|  +|+++.|+.++ .+|.+.+|.++.....  ...+     ..+...+....|+ |+++.|+..+ .++...+|++..
T Consensus       254 ~w--SPDG~~La~~~~~~g~~~Iy~~d~~~~~--~~~l-----t~~~~~~~~~~wS-pDG~~i~f~s~~~g~~~I~~~~~  323 (429)
T PRK01742        254 AF--SPDGSRLAFASSKDGVLNIYVMGANGGT--PSQL-----TSGAGNNTEPSWS-PDGQSILFTSDRSGSPQVYRMSA  323 (429)
T ss_pred             eE--CCCCCEEEEEEecCCcEEEEEEECCCCC--eEee-----ccCCCCcCCEEEC-CCCCEEEEEECCCCCceEEEEEC
Confidence            88  99999888764 6887777655421111  1112     1244567789999 7888766554 567778877643


Q ss_pred             CCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEE
Q psy17342        252 NKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATV  331 (401)
Q Consensus       252 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~  331 (401)
                      .... ...+ .+..  ....|+|+      ++.|+..+.++ +.+||+.+++.......+  ....+.|+|+|+ +++.+
T Consensus       324 ~~~~-~~~l-~~~~--~~~~~SpD------G~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~-~i~~~  389 (429)
T PRK01742        324 SGGG-ASLV-GGRG--YSAQISAD------GKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGI-MIIYS  389 (429)
T ss_pred             CCCC-eEEe-cCCC--CCccCCCC------CCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCC-EEEEE
Confidence            2221 2222 3333  45789998      78888777655 566999887654322222  335688999998 67777


Q ss_pred             ecCCEEEEEeCC--CCCCCcceEEeecCCCCeEEEEecCC
Q psy17342        332 EVAGRVDLWNLN--LDTEVPATSAIVEGAPALSRVTWTPN  369 (401)
Q Consensus       332 ~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~s~~  369 (401)
                      +.++...+|++.  ++.....+   ..+...+...+|+|-
T Consensus       390 s~~g~~~~l~~~~~~G~~~~~l---~~~~g~~~~p~wsp~  426 (429)
T PRK01742        390 STQGLGKVLQLVSADGRFKARL---PGSDGQVKFPAWSPY  426 (429)
T ss_pred             EcCCCceEEEEEECCCCceEEc---cCCCCCCCCcccCCC
Confidence            788888888764  34433333   245566888999985

>KOG2321|consensus

Probab=99.70  E-value=3.6e-15  Score=127.90  Aligned_cols=263  Identities=14%  Similarity=0.194  Sum_probs=186.3

Q ss_pred             CcEEEEEeCcCCCCCceEE-----------------------EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCC
Q psy17342         96 DGVCLIWNTKFKKTTPEFE-----------------------FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQK  152 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~~~~-----------------------~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~  152 (401)
                      -+.|+||++..++.+|...                       +.++...+.|..+|||..++++|..--.|++||+..-.
T Consensus         6 ~NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS   85 (703)
T KOG2321|consen    6 VNDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS   85 (703)
T ss_pred             cCceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccce
Confidence            4678999988777666432                       34567889999999999999999999999999998765


Q ss_pred             CCceeeccccccCCC-CcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCC
Q psy17342        153 KTPVHRTPLSVMAHT-HPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQND  231 (401)
Q Consensus       153 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  231 (401)
                      ..        +..|. ..+..+... +.+-..++.-..|.+|.+.....   ....+.++        .....++++.++
T Consensus        86 LK--------FERhlDae~V~feiL-sDD~SK~v~L~~DR~IefHak~G---~hy~~RIP--------~~GRDm~y~~~s  145 (703)
T KOG2321|consen   86 LK--------FERHLDAEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKYG---RHYRTRIP--------KFGRDMKYHKPS  145 (703)
T ss_pred             ee--------eeecccccceeEEEe-ccchhhheEeecCceeeehhhcC---eeeeeecC--------cCCccccccCCC
Confidence            32        33332 233333221 44445555556677766644321   11111221        244567777556


Q ss_pred             CCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee-
Q psy17342        232 VNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE-  310 (401)
Q Consensus       232 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-  310 (401)
                      ..++++|+ ...|+-+++.  ++..+..|....+.++++..++.      ..+|++|+.+|.|..||.+....+.++.. 
T Consensus       146 cDly~~gs-g~evYRlNLE--qGrfL~P~~~~~~~lN~v~in~~------hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~  216 (703)
T KOG2321|consen  146 CDLYLVGS-GSEVYRLNLE--QGRFLNPFETDSGELNVVSINEE------HGLLACGTEDGVVEFWDPRDKSRVGTLDAA  216 (703)
T ss_pred             ccEEEeec-CcceEEEEcc--ccccccccccccccceeeeecCc------cceEEecccCceEEEecchhhhhheeeecc
Confidence            65555554 4567777877  55577788878899999999998      58999999999999999998777766653 


Q ss_pred             -----cCC-----ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC--CcEEEEEec
Q psy17342        311 -----FRD-----YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN--GTQLCVGDE  378 (401)
Q Consensus       311 -----~~~-----~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~  378 (401)
                           |.+     .|+++.|+.+|- -+++|..+|.+.|||+++.+++..  ......-+|..+.|.+.  ++.|++. .
T Consensus       217 ~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~pl~~--kdh~~e~pi~~l~~~~~~~q~~v~S~-D  292 (703)
T KOG2321|consen  217 SSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASKPLLV--KDHGYELPIKKLDWQDTDQQNKVVSM-D  292 (703)
T ss_pred             cccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCCceee--cccCCccceeeecccccCCCceEEec-c
Confidence                 233     399999999985 789999999999999998775433  32345678999999776  3445544 3


Q ss_pred             CCcEEEEEeccCc
Q psy17342        379 KGAITMFDVGEVG  391 (401)
Q Consensus       379 dg~v~iw~~~~~~  391 (401)
                      ...++|||-.+++
T Consensus       293 k~~~kiWd~~~Gk  305 (703)
T KOG2321|consen  293 KRILKIWDECTGK  305 (703)
T ss_pred             hHHhhhcccccCC
Confidence            4579999999884

>KOG3881|consensus

Probab=99.70  E-value=3.5e-15  Score=122.16  Aligned_cols=271  Identities=9%  Similarity=0.117  Sum_probs=187.1

Q ss_pred             cceEEEEecCCCCC--eEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceE-----EEecCCCeeEEEEeCCCCceEEEEe
Q psy17342         66 RNVTYMDWSTQHPE--LLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEF-----EFFCQSPVLSCCFAKFNPYLILGGT  138 (401)
Q Consensus        66 ~~v~~~~~~~~~~~--l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~~g~  138 (401)
                      ..|..++|.-+++.  ++...          .+..+..............     ......+|..++...   ..|++|.
T Consensus        56 ~ris~l~~~~d~~tevl~~r~----------~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d---g~Litc~  122 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARS----------ADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD---GTLITCV  122 (412)
T ss_pred             hhhhhheeecCCceeEeeccc----------cCcccccccccCCccccccccccccccccccccchhhcC---CEEEEEe
Confidence            66888888876654  33332          4667777777655444432     112356777777653   3577778


Q ss_pred             cCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecC-CceEEEEEeCC--CcEEEeeccCCCCCcccccccc--c
Q psy17342        139 YSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISND--GRLCSWSLEMLSSPQETRDLQY--N  213 (401)
Q Consensus       139 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~~--~  213 (401)
                      .+|.+.+|....+.....  ....+.. ...+..+.-  .+ ....+++|+..  ..+.+||++..   .+.+....  +
T Consensus       123 ~sG~l~~~~~k~~d~hss--~l~~la~-g~g~~~~r~--~~~~p~Iva~GGke~~n~lkiwdle~~---~qiw~aKNvpn  194 (412)
T KOG3881|consen  123 SSGNLQVRHDKSGDLHSS--KLIKLAT-GPGLYDVRQ--TDTDPYIVATGGKENINELKIWDLEQS---KQIWSAKNVPN  194 (412)
T ss_pred             cCCcEEEEeccCCccccc--cceeeec-CCceeeecc--CCCCCceEecCchhcccceeeeecccc---eeeeeccCCCC
Confidence            899999999986542110  0011122 234444443  33 34456668888  78999999863   22222111  0


Q ss_pred             cccC--CccceEEEEeccCC-CCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC
Q psy17342        214 NKQT--KNLAVLSLAFPQND-VNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY  290 (401)
Q Consensus       214 ~~~~--~~~~v~~~~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~  290 (401)
                      ...+  -...++++.|.+++ ...|++++.-+.+++||.+. ..+++..+.--..+++++...|.      ++++++|..
T Consensus       195 D~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~-qRRPV~~fd~~E~~is~~~l~p~------gn~Iy~gn~  267 (412)
T KOG3881|consen  195 DRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH-QRRPVAQFDFLENPISSTGLTPS------GNFIYTGNT  267 (412)
T ss_pred             ccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcc-cCcceeEeccccCcceeeeecCC------CcEEEEecc
Confidence            0111  23356788888332 67899999999999999984 44577788777899999999999      799999999


Q ss_pred             CCeEEEEEeeCCCceEE-EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC
Q psy17342        291 DWSVKLWNIKENKPVHS-FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN  369 (401)
Q Consensus       291 d~~i~iwd~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  369 (401)
                      -+.+..||++.++.... +.+-.+.|.++..+|.++ +++++|-|..|||+|+.+.+.+.....    ...++.+-+.++
T Consensus       268 ~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktrkll~kvYv----Ks~lt~il~~~~  342 (412)
T KOG3881|consen  268 KGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTRKLLHKVYV----KSRLTFILLRDD  342 (412)
T ss_pred             cchhheecccCceeeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecccchhhhhhhh----hccccEEEecCC
Confidence            99999999999887766 888899999999999998 899999999999999999665544322    344566666544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=4e-15  Score=133.70  Aligned_cols=211  Identities=13%  Similarity=0.074  Sum_probs=141.7

Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC---CcEEEeeccCCCCCcccccccccccc
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND---GRLCSWSLEMLSSPQETRDLQYNNKQ  216 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~  216 (401)
                      +..|.+||.+.....       .+..|...+.+.+|  +|+++.|+.++.+   ..|.+||+.... .......     .
T Consensus       183 ~~~i~i~d~dg~~~~-------~lt~~~~~v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~tg~-~~~l~~~-----~  247 (429)
T PRK01742        183 PYEVRVADYDGFNQF-------IVNRSSQPLMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRSGA-RKVVASF-----R  247 (429)
T ss_pred             eEEEEEECCCCCCce-------EeccCCCccccceE--cCCCCEEEEEEecCCCcEEEEEeCCCCc-eEEEecC-----C
Confidence            468999998765532       23467788999999  9999999987654   369999987522 2111111     1


Q ss_pred             CCccceEEEEeccCCCCeEEEEc-CCceEEE--EeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe-CCC
Q psy17342        217 TKNLAVLSLAFPQNDVNNFVVGC-EDGNVYS--ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS-YDW  292 (401)
Q Consensus       217 ~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~--~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~  292 (401)
                         .....++|+ |+++.|+.+. .+|.+.+  +|+.+.   ....+..+...+.+..|+|+      ++.|+..+ .++
T Consensus       248 ---g~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~d~~~~---~~~~lt~~~~~~~~~~wSpD------G~~i~f~s~~~g  314 (429)
T PRK01742        248 ---GHNGAPAFS-PDGSRLAFASSKDGVLNIYVMGANGG---TPSQLTSGAGNNTEPSWSPD------GQSILFTSDRSG  314 (429)
T ss_pred             ---CccCceeEC-CCCCEEEEEEecCCcEEEEEEECCCC---CeEeeccCCCCcCCEEECCC------CCEEEEEECCCC
Confidence               123468999 7898887764 6776555  455433   24455667777889999998      66655544 578


Q ss_pred             eEEEEEeeCC-CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc
Q psy17342        293 SVKLWNIKEN-KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT  371 (401)
Q Consensus       293 ~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  371 (401)
                      ...||++... .....+ .+..  ....|+|+|+ .++..+.++ +.+||+.++..... .   .. .....++|+|||+
T Consensus       315 ~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~g~~~~l-t---~~-~~~~~~~~sPdG~  384 (429)
T PRK01742        315 SPQVYRMSASGGGASLV-GGRG--YSAQISADGK-TLVMINGDN-VVKQDLTSGSTEVL-S---ST-FLDESPSISPNGI  384 (429)
T ss_pred             CceEEEEECCCCCeEEe-cCCC--CCccCCCCCC-EEEEEcCCC-EEEEECCCCCeEEe-c---CC-CCCCCceECCCCC
Confidence            8899987643 222223 3333  4578999998 566565554 56699987754321 1   11 1234678999999


Q ss_pred             EEEEEecCCcEEEEEec
Q psy17342        372 QLCVGDEKGAITMFDVG  388 (401)
Q Consensus       372 ~l~~~~~dg~v~iw~~~  388 (401)
                      +|+.++.+|.+.+|.+.
T Consensus       385 ~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        385 MIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             EEEEEEcCCCceEEEEE
Confidence            99999999999888874

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.68  E-value=1.8e-14  Score=125.26  Aligned_cols=300  Identities=13%  Similarity=0.118  Sum_probs=170.2

Q ss_pred             EEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEEC
Q psy17342         69 TYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDT  148 (401)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~  148 (401)
                      ..+.|+|||+++.+++          .||.|.++|+.+.+.+.+...  ......++++++|+.++++....+.+.++|.
T Consensus        40 ~~~~~s~Dgr~~yv~~----------rdg~vsviD~~~~~~v~~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~  107 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVAN----------RDGTVSVIDLATGKVVATIKV--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDA  107 (369)
T ss_dssp             EEEE-TT-SSEEEEEE----------TTSEEEEEETTSSSEEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred             eEEEecCCCCEEEEEc----------CCCeEEEEECCcccEEEEEec--CCCcceEEEcCCCCEEEEEecCCCceeEecc
Confidence            3467999999999998          799999999998887766544  4567899999999656666667899999999


Q ss_pred             CCCCCCceeecc-ccccCCCCcEEEEEEeecCCceEEEEEeC-CCcEEEeeccCCCCCccccccccccccCCccceEEEE
Q psy17342        149 RVQKKTPVHRTP-LSVMAHTHPVFCMSVIGTQNAHNLISISN-DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLA  226 (401)
Q Consensus       149 ~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  226 (401)
                      ++.+........ .........+.++..  ++....++..-. .+.|.+.|..... +.....+.      .........
T Consensus       108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~--s~~~~~fVv~lkd~~~I~vVdy~d~~-~~~~~~i~------~g~~~~D~~  178 (369)
T PF02239_consen  108 ETLEPVKTIPTGGMPVDGPESRVAAIVA--SPGRPEFVVNLKDTGEIWVVDYSDPK-NLKVTTIK------VGRFPHDGG  178 (369)
T ss_dssp             TT--EEEEEE--EE-TTTS---EEEEEE---SSSSEEEEEETTTTEEEEEETTTSS-CEEEEEEE--------TTEEEEE
T ss_pred             ccccceeecccccccccccCCCceeEEe--cCCCCEEEEEEccCCeEEEEEecccc-ccceeeec------ccccccccc
Confidence            887654322110 111123446666665  667765555544 4777777776532 11111111      233556788


Q ss_pred             eccCCCCeEEEE-cCCceEEEEeCCCCCCCceeeec----CCCCceeeeecCccCC---C-CCCCcEEEEEeCCCeEEEE
Q psy17342        227 FPQNDVNNFVVG-CEDGNVYSACRHGNKAGNVECYE----GHEGPVVGLSSHRAQG---H-IDFSHLYLTSSYDWSVKLW  297 (401)
Q Consensus       227 ~~~~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~~~----~~~~~v~~i~~~~~~~---~-~~~~~~l~s~~~d~~i~iw  297 (401)
                      |+ +++++++++ ..+..|-++|....+  .+..+.    .|..++..+ .+|..+   . ...+...++.-....+.+|
T Consensus       179 ~d-pdgry~~va~~~sn~i~viD~~~~k--~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~  254 (369)
T PF02239_consen  179 FD-PDGRYFLVAANGSNKIAVIDTKTGK--LVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVH  254 (369)
T ss_dssp             E--TTSSEEEEEEGGGTEEEEEETTTTE--EEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred             cC-cccceeeecccccceeEEEeeccce--EEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccc
Confidence            88 788876654 566788899987443  222221    233333332 122210   0 0001222122223456678


Q ss_pred             EeeCCCceEEEeecCCceEEEEECCCCCcEEEE---EecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEE
Q psy17342        298 NIKENKPVHSFNEFRDYVMDVQWSPINPALFAT---VEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLC  374 (401)
Q Consensus       298 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~---~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  374 (401)
                      |..+.+.++++....++ .-+..+|+++++.+.   +...+.|.++|.++.+....+.  ......+..+.|+++|+.+.
T Consensus       255 d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~--~~~~~~~~h~ef~~dG~~v~  331 (369)
T PF02239_consen  255 DDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT--PGPGKRVVHMEFNPDGKEVW  331 (369)
T ss_dssp             TTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH--HHHT--EEEEEE-TTSSEEE
T ss_pred             hhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe--ccCCCcEeccEECCCCCEEE
Confidence            88889999999986666 778889999855444   3556899999999874333321  12233488999999999776


Q ss_pred             EEecC--CcEEEEEeccCccceeeee
Q psy17342        375 VGDEK--GAITMFDVGEVGIACLKFI  398 (401)
Q Consensus       375 ~~~~d--g~v~iw~~~~~~~~~l~~~  398 (401)
                      .+..+  +.|.+||..+.  +.++.+
T Consensus       332 vS~~~~~~~i~v~D~~Tl--~~~~~i  355 (369)
T PF02239_consen  332 VSVWDGNGAIVVYDAKTL--KEKKRI  355 (369)
T ss_dssp             EEEE--TTEEEEEETTTT--EEEEEE
T ss_pred             EEEecCCCEEEEEECCCc--EEEEEE
Confidence            55443  46999999987  444444

...

>KOG2139|consensus

Probab=99.67  E-value=1.3e-13  Score=112.00  Aligned_cols=277  Identities=14%  Similarity=0.174  Sum_probs=171.8

Q ss_pred             hhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCC-eE
Q psy17342          3 WAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPE-LL   81 (401)
Q Consensus         3 ~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~   81 (401)
                      |-.+-.-+|+++.|-.||+++... +....+...                           ..+.|+|++|-|.+.. |+
T Consensus       106 WhqH~~~fava~nddvVriy~kss-t~pt~Lks~---------------------------sQrnvtclawRPlsasela  157 (445)
T KOG2139|consen  106 WHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSV---------------------------SQRNVTCLAWRPLSASELA  157 (445)
T ss_pred             echhhhhhhhhccCcEEEEeccCC-CCCceecch---------------------------hhcceeEEEeccCCcceee
Confidence            444555678888899999987655 211112111                           1266999999997655 55


Q ss_pred             EEEeccCCCCCCCCCcEEEEEeCcCCCCC------------ceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECC
Q psy17342         82 LASYHRNKEAPNEPDGVCLIWNTKFKKTT------------PEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTR  149 (401)
Q Consensus        82 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~  149 (401)
                      .++           .+-|.||..+.....            ..+......+|++|+|++|+..++-+.-.|..|.|||.+
T Consensus       158 vgC-----------r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpd  226 (445)
T KOG2139|consen  158 VGC-----------RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPD  226 (445)
T ss_pred             eee-----------cceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCC
Confidence            555           678999987531111            111122246899999999985444444457789999999


Q ss_pred             CCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEecc
Q psy17342        150 VQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQ  229 (401)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  229 (401)
                      ++...+...      ...+.+.-+.|  +|++++|++++-|+..++|.............        ..+.|...+|+ 
T Consensus       227 tg~~~pL~~------~glgg~slLkw--SPdgd~lfaAt~davfrlw~e~q~wt~erw~l--------gsgrvqtacWs-  289 (445)
T KOG2139|consen  227 TGQKIPLIP------KGLGGFSLLKW--SPDGDVLFAATCDAVFRLWQENQSWTKERWIL--------GSGRVQTACWS-  289 (445)
T ss_pred             CCCcccccc------cCCCceeeEEE--cCCCCEEEEecccceeeeehhcccceecceec--------cCCceeeeeec-
Confidence            988765531      33457788999  99999999999999999997653222222111        23389999999 


Q ss_pred             CCCCeEE-EEcCCceEEEEeCCCCCCCc-----------eeeec------C---CCCceeeeecCccCCCCCCCcEEEEE
Q psy17342        230 NDVNNFV-VGCEDGNVYSACRHGNKAGN-----------VECYE------G---HEGPVVGLSSHRAQGHIDFSHLYLTS  288 (401)
Q Consensus       230 ~~~~~l~-~~~~d~~i~~~~~~~~~~~~-----------~~~~~------~---~~~~v~~i~~~~~~~~~~~~~~l~s~  288 (401)
                      |.+..|+ +.+..-.++-.....+....           +..++      +   -.+++.+++|.|.      |+++++.
T Consensus       290 pcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDps------GeyLav~  363 (445)
T KOG2139|consen  290 PCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPS------GEYLAVI  363 (445)
T ss_pred             CCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCC------CCEEEEE
Confidence            6776655 44444445443332211110           00010      1   1367889999999      8999987


Q ss_pred             eCCC--------eEEEEEeeCCCceEEEe--e--cCCceEEEEECC---CCCcEEEEEecCCEEEEEeCC
Q psy17342        289 SYDW--------SVKLWNIKENKPVHSFN--E--FRDYVMDVQWSP---INPALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       289 ~~d~--------~i~iwd~~~~~~~~~~~--~--~~~~v~~v~~~~---~~~~~l~~~~~d~~i~iwd~~  343 (401)
                      -..+        .|.+||.+..-+ .++.  +  ......-++|+|   +++ +|..+=..|.+.-|++.
T Consensus       364 fKg~~~v~~~k~~i~~fdtr~sp~-vels~cg~i~ge~P~~IsF~pl~n~g~-lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  364 FKGQSFVLLCKLHISRFDTRKSPP-VELSYCGMIGGEYPAYISFGPLKNEGR-LLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             EcCCchhhhhhhhhhhhcccccCc-eEEEecccccCCCCceEEeeecccCCc-EEEEEeccCceEeeeeE
Confidence            6543        367788765433 3332  1  112234566665   344 66666667777777654

>KOG2394|consensus

Probab=99.67  E-value=3.4e-15  Score=127.03  Aligned_cols=225  Identities=16%  Similarity=0.212  Sum_probs=158.4

Q ss_pred             cCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE---EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC
Q psy17342         74 STQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE---FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV  150 (401)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~  150 (401)
                      .|.+-.|+.+-          ..|.|++.|....+....+.   .-....|+|+.|-|.++.+++.+-.+|.+.+||..-
T Consensus       182 ~~~g~dllIGf----------~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~  251 (636)
T KOG2394|consen  182 TPKGLDLLIGF----------TTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI  251 (636)
T ss_pred             CCCCcceEEee----------ccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc
Confidence            45566677776          68999999886422111111   113578999999998778888888999999999732


Q ss_pred             CCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccC
Q psy17342        151 QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQN  230 (401)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  230 (401)
                      ..            +.+.+    .|...+++..+.....       .-.....|.....+       -...|..++|+ +
T Consensus       252 ~~------------~~t~p----~~~~~k~~~~f~i~t~-------ksk~~rNPv~~w~~-------~~g~in~f~FS-~  300 (636)
T KOG2394|consen  252 VC------------GATAP----SYQALKDGDQFAILTS-------KSKKTRNPVARWHI-------GEGSINEFAFS-P  300 (636)
T ss_pred             cc------------cCCCC----cccccCCCCeeEEeee-------eccccCCccceeEe-------ccccccceeEc-C
Confidence            11            11111    1111344444433211       11111112222211       23478999999 6


Q ss_pred             CCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee
Q psy17342        231 DVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE  310 (401)
Q Consensus       231 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  310 (401)
                      |+++||+.+.||.++|||....  +++..++..-+...|++|+|+      +++|++|++|.-|.||.+...+.+..=.+
T Consensus       301 DG~~LA~VSqDGfLRvF~fdt~--eLlg~mkSYFGGLLCvcWSPD------GKyIvtGGEDDLVtVwSf~erRVVARGqG  372 (636)
T KOG2394|consen  301 DGKYLATVSQDGFLRIFDFDTQ--ELLGVMKSYFGGLLCVCWSPD------GKYIVTGGEDDLVTVWSFEERRVVARGQG  372 (636)
T ss_pred             CCceEEEEecCceEEEeeccHH--HHHHHHHhhccceEEEEEcCC------ccEEEecCCcceEEEEEeccceEEEeccc
Confidence            9999999999999999999843  345555556678999999999      89999999999999999999999999999


Q ss_pred             cCCceEEEEECCC-----------------------------------C------------CcEEEEEecCCEEEEEeCC
Q psy17342        311 FRDYVMDVQWSPI-----------------------------------N------------PALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       311 ~~~~v~~v~~~~~-----------------------------------~------------~~~l~~~~~d~~i~iwd~~  343 (401)
                      |+.+|..|+|.|-                                   +            .+.|.+.+.|-++.+||+.
T Consensus       373 HkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlt  452 (636)
T KOG2394|consen  373 HKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLT  452 (636)
T ss_pred             cccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecc
Confidence            9999999999831                                   0            2457888899999999997


Q ss_pred             CCCC
Q psy17342        344 LDTE  347 (401)
Q Consensus       344 ~~~~  347 (401)
                      ....
T Consensus       453 eD~L  456 (636)
T KOG2394|consen  453 EDVL  456 (636)
T ss_pred             hhhc
Confidence            6543

>KOG3881|consensus

Probab=99.67  E-value=6.7e-15  Score=120.49  Aligned_cols=230  Identities=12%  Similarity=0.149  Sum_probs=167.7

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCC--CCceEEEecCCCeeEEEEeCCCCceEEEEecC--C
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK--TTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS--G  141 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d--g  141 (401)
                      .+|..++.. ++ .|++|-          .+|.+.+|..+.+.  ..+........++..|.-++..+.++++|+..  .
T Consensus       106 ~~I~gl~~~-dg-~Litc~----------~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n  173 (412)
T KOG3881|consen  106 KSIKGLKLA-DG-TLITCV----------SSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENIN  173 (412)
T ss_pred             ccccchhhc-CC-EEEEEe----------cCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhccc
Confidence            345554443 33 466666          69999999998544  22333344457888888888888899999998  8


Q ss_pred             eEEEEECCCCCCCceeecc-ccccCC--CCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342        142 QIVLWDTRVQKKTPVHRTP-LSVMAH--THPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~-~~~~~~--~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      .+.|||++........+.+ -..-+-  .-.++++.|.+......|++++.-+.+++||.+...+|...+.+       .
T Consensus       174 ~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-------~  246 (412)
T KOG3881|consen  174 ELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-------L  246 (412)
T ss_pred             ceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc-------c
Confidence            8999999887432211110 000111  12446677743323789999999999999999976667666554       3


Q ss_pred             ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      ..+++++... |+++.+++|...+.+..||++.... ....+.+-.+.|++|..+|.      .+++++++-|..+||+|
T Consensus       247 E~~is~~~l~-p~gn~Iy~gn~~g~l~~FD~r~~kl-~g~~~kg~tGsirsih~hp~------~~~las~GLDRyvRIhD  318 (412)
T KOG3881|consen  247 ENPISSTGLT-PSGNFIYTGNTKGQLAKFDLRGGKL-LGCGLKGITGSIRSIHCHPT------HPVLASCGLDRYVRIHD  318 (412)
T ss_pred             cCcceeeeec-CCCcEEEEecccchhheecccCcee-eccccCCccCCcceEEEcCC------CceEEeeccceeEEEee
Confidence            4689999999 8999999999999999999985542 23348889999999999998      69999999999999999


Q ss_pred             eeCCCceEEEeecCCceEEEEECCC
Q psy17342        299 IKENKPVHSFNEFRDYVMDVQWSPI  323 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~v~~v~~~~~  323 (401)
                      +.+.+++..... ...++++-+.++
T Consensus       319 ~ktrkll~kvYv-Ks~lt~il~~~~  342 (412)
T KOG3881|consen  319 IKTRKLLHKVYV-KSRLTFILLRDD  342 (412)
T ss_pred             cccchhhhhhhh-hccccEEEecCC
Confidence            999777665443 455677777654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.66  E-value=1.1e-14  Score=115.10  Aligned_cols=151  Identities=17%  Similarity=0.360  Sum_probs=104.6

Q ss_pred             EEEEeccCCCCeEEEEcC----------CceEEEEeCCCCCCCceeeec-CCCCceeeeecCccCCCCCCCcEEEE--Ee
Q psy17342        223 LSLAFPQNDVNNFVVGCE----------DGNVYSACRHGNKAGNVECYE-GHEGPVVGLSSHRAQGHIDFSHLYLT--SS  289 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~----------d~~i~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~~~~l~s--~~  289 (401)
                      ..+.|+ ++|..|++-..          -+...+|.++.... ....+. ...++|.+++|+|+      ++.|+.  |.
T Consensus         9 ~~~~W~-~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP~------g~~favi~g~   80 (194)
T PF08662_consen    9 AKLHWQ-PSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSPN------GNEFAVIYGS   80 (194)
T ss_pred             EEEEec-ccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECcC------CCEEEEEEcc
Confidence            456788 67776654433          12344444432222 233333 24567999999998      566544  34


Q ss_pred             CCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEec---CCEEEEEeCCCCCCCcceEEeecCCCCeEEEEe
Q psy17342        290 YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEV---AGRVDLWNLNLDTEVPATSAIVEGAPALSRVTW  366 (401)
Q Consensus       290 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  366 (401)
                      .++.|.+||++ ++++..+.  ...++.+.|+|+|+ +++.++.   .|.|.+||.++.+.+...     ....++.++|
T Consensus        81 ~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~~~i~~~-----~~~~~t~~~W  151 (194)
T PF08662_consen   81 MPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKKKKISTF-----EHSDATDVEW  151 (194)
T ss_pred             CCcccEEEcCc-ccEeEeec--CCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCCEEeecc-----ccCcEEEEEE
Confidence            57899999996 66666664  56788999999998 5666653   467999999976654442     2345789999


Q ss_pred             cCCCcEEEEEec------CCcEEEEEeccC
Q psy17342        367 TPNGTQLCVGDE------KGAITMFDVGEV  390 (401)
Q Consensus       367 s~~g~~l~~~~~------dg~v~iw~~~~~  390 (401)
                      +|||++|+++..      |+.++||++...
T Consensus       152 sPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  152 SPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             cCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            999999998864      788999999654

>KOG1272|consensus

Probab=99.66  E-value=2.8e-16  Score=131.16  Aligned_cols=232  Identities=13%  Similarity=0.136  Sum_probs=179.6

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS  197 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd  197 (401)
                      .-..+.+.++.+| ..|+.|+.-|.|..+|..+......       ..-...|.++.|  -.+..+|++ .....+.+||
T Consensus       129 eFGPY~~~ytrnG-rhlllgGrKGHlAa~Dw~t~~L~~E-------i~v~Etv~Dv~~--LHneq~~AV-AQK~y~yvYD  197 (545)
T KOG1272|consen  129 EFGPYHLDYTRNG-RHLLLGGRKGHLAAFDWVTKKLHFE-------INVMETVRDVTF--LHNEQFFAV-AQKKYVYVYD  197 (545)
T ss_pred             ccCCeeeeecCCc-cEEEecCCccceeeeecccceeeee-------eehhhhhhhhhh--hcchHHHHh-hhhceEEEec
Confidence            3456788999877 5666777899999999998875422       234567888998  455555555 4667899998


Q ss_pred             ccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCC
Q psy17342        198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQG  277 (401)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  277 (401)
                      -..    ....-+.      ....|..+.|. |..-+|++++..|.+..-|..  .++.+..+..-.+.+..+.-+|.  
T Consensus       198 ~~G----tElHClk------~~~~v~rLeFL-PyHfLL~~~~~~G~L~Y~DVS--~GklVa~~~t~~G~~~vm~qNP~--  262 (545)
T KOG1272|consen  198 NNG----TELHCLK------RHIRVARLEFL-PYHFLLVAASEAGFLKYQDVS--TGKLVASIRTGAGRTDVMKQNPY--  262 (545)
T ss_pred             CCC----cEEeehh------hcCchhhhccc-chhheeeecccCCceEEEeec--hhhhhHHHHccCCccchhhcCCc--
Confidence            542    1111111      33578889999 778889999999999999988  44567777777888999999998  


Q ss_pred             CCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecC
Q psy17342        278 HIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG  357 (401)
Q Consensus       278 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  357 (401)
                          +..+-+|...|+|.+|.....+++..+-.|.++|.++++.++|. ++++.+.|..++|||++....+..+..    
T Consensus       263 ----NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~ql~t~~t----  333 (545)
T KOG1272|consen  263 ----NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFYQLHTYRT----  333 (545)
T ss_pred             ----cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccccccceeec----
Confidence                58899999999999999999999999999999999999999997 899999999999999998876555432    


Q ss_pred             CCCeEEEEecCCCcEEEEEecCCcEEEEE
Q psy17342        358 APALSRVTWTPNGTQLCVGDEKGAITMFD  386 (401)
Q Consensus       358 ~~~v~~~~~s~~g~~l~~~~~dg~v~iw~  386 (401)
                      ..+...+++|..| .||.+-. ..|.||.
T Consensus       334 p~~a~~ls~Sqkg-lLA~~~G-~~v~iw~  360 (545)
T KOG1272|consen  334 PHPASNLSLSQKG-LLALSYG-DHVQIWK  360 (545)
T ss_pred             CCCcccccccccc-ceeeecC-Ceeeeeh
Confidence            3456778888666 3544443 4699995

>KOG2315|consensus

Probab=99.62  E-value=5.9e-13  Score=114.30  Aligned_cols=291  Identities=11%  Similarity=0.143  Sum_probs=181.7

Q ss_pred             ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEE
Q psy17342         67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLW  146 (401)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw  146 (401)
                      .+.++.|+|.|.+|.+--.-.....-....-.+++|+++++.....+....... .+..|++|. . +++--..+.+.+|
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dE-s-l~arlv~nev~f~  151 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDE-S-LAARLVSNEVQFY  151 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccch-h-hhhhhhcceEEEE
Confidence            588999999999887643111000001123568899999854444444333333 689999875 3 3333345789999


Q ss_pred             ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEE-----EeCCCcEEEeeccCCCCCccccccccccccCCccc
Q psy17342        147 DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLIS-----ISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA  221 (401)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  221 (401)
                      +..+.+..       .-.-|...|..+.+.+.|....+++     .+.-+.+++|...... .........    --...
T Consensus       152 ~~~~f~~~-------~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~-~~~~~a~ks----FFkad  219 (566)
T KOG2315|consen  152 DLGSFKTI-------QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG-QHQPVANKS----FFKAD  219 (566)
T ss_pred             ecCCccce-------eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc-ccchhhhcc----ccccc
Confidence            99874432       1245677888888844434445553     3445579999876211 111111110    01122


Q ss_pred             eEEEEeccCCCCeEEEEcC-----------CceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEE--E
Q psy17342        222 VLSLAFPQNDVNNFVVGCE-----------DGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLT--S  288 (401)
Q Consensus       222 v~~~~~~~~~~~~l~~~~~-----------d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s--~  288 (401)
                      =-.+.|++....+|+.++.           ...++++++.+.+  ....+. -.++|.++.|+|+      +.-|+.  |
T Consensus       220 kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s--~~V~L~-k~GPVhdv~W~~s------~~EF~VvyG  290 (566)
T KOG2315|consen  220 KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES--VSVPLL-KEGPVHDVTWSPS------GREFAVVYG  290 (566)
T ss_pred             eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce--EEEecC-CCCCceEEEECCC------CCEEEEEEe
Confidence            2346677333334433321           2357777766322  222332 4799999999999      554444  3


Q ss_pred             eCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecC---CEEEEEeCCCCCCCcceEEeecCCCCeEEEE
Q psy17342        289 SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVA---GRVDLWNLNLDTEVPATSAIVEGAPALSRVT  365 (401)
Q Consensus       289 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  365 (401)
                      -.-..+.|||++ ++++..+.  .++-+++-|+|.|+ +++.+|-+   |.+.|||+.+.+++..+.     ...-+-+.
T Consensus       291 fMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~-ii~lAGFGNL~G~mEvwDv~n~K~i~~~~-----a~~tt~~e  361 (566)
T KOG2315|consen  291 FMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGN-IILLAGFGNLPGDMEVWDVPNRKLIAKFK-----AANTTVFE  361 (566)
T ss_pred             cccceEEEEcCC-CCEeEeCC--CCCccceEECCCCC-EEEEeecCCCCCceEEEeccchhhccccc-----cCCceEEE
Confidence            457789999986 67776664  57788999999998 55555543   789999999977666543     23356689


Q ss_pred             ecCCCcEEEEEec------CCcEEEEEeccC
Q psy17342        366 WTPNGTQLCVGDE------KGAITMFDVGEV  390 (401)
Q Consensus       366 ~s~~g~~l~~~~~------dg~v~iw~~~~~  390 (401)
                      |+|||.++++++.      |+.++||++...
T Consensus       362 W~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  362 WSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             EcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence            9999999998875      678999999654

>KOG0974|consensus

Probab=99.61  E-value=5.5e-14  Score=128.80  Aligned_cols=275  Identities=13%  Similarity=0.124  Sum_probs=183.0

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCC-----ceEEEEecC
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNP-----YLILGGTYS  140 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~l~~g~~d  140 (401)
                      .++.+.++-.  ++|+++.           ...|.+||+.++..+..+..-+.-.+.    .+.+.     .+++++...
T Consensus         8 ~~l~~~~~~~--~~llag~-----------gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~   70 (967)
T KOG0974|consen    8 GPLNLPQLVS--DYLLAGS-----------GPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKS   70 (967)
T ss_pred             ccccchhhcc--ceeeecC-----------CCceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEee
Confidence            3455555443  5777776           678999999876554433322111121    11111     234444333


Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      +.+..=+.....          ...-.+.|....+  ..+...++.++.+..+.+||........+   ...    ....
T Consensus        71 ~~v~~~~~~~~~----------~~~~s~wi~g~~l--~~e~k~i~l~~~~ns~~i~d~~~~~~~~~---i~~----~er~  131 (967)
T KOG0974|consen   71 DEVYVKEASNQI----------IERFSDWIFGAKL--FEENKKIALVTSRNSLLIRDSKNSSVLSK---IQS----DERC  131 (967)
T ss_pred             cceeecchhhhh----------hhhccccccccch--hhhcceEEEEEcCceEEEEecccCceehh---cCC----CceE
Confidence            333322222111          1122233333333  44677888889999999999874221111   111    0111


Q ss_pred             c---eEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEE
Q psy17342        221 A---VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLW  297 (401)
Q Consensus       221 ~---v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iw  297 (401)
                      .   ..-+-++ ++.-++++|+.-+.|.+|...... .+. .+.+|.+.|.++.++-+      +.++++.|.|.++|+|
T Consensus       132 ~l~~~~~~g~s-~~~~~i~~gsv~~~iivW~~~~dn-~p~-~l~GHeG~iF~i~~s~d------g~~i~s~SdDRsiRlW  202 (967)
T KOG0974|consen  132 TLYSSLIIGDS-AEELYIASGSVFGEIIVWKPHEDN-KPI-RLKGHEGSIFSIVTSLD------GRYIASVSDDRSIRLW  202 (967)
T ss_pred             EEEeEEEEecc-CcEEEEEeccccccEEEEeccccC-Ccc-eecccCCceEEEEEccC------CcEEEEEecCcceeee
Confidence            1   1112234 667789999999999999987333 233 67899999999999988      8999999999999999


Q ss_pred             EeeCCCceE-EEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEE
Q psy17342        298 NIKENKPVH-SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVG  376 (401)
Q Consensus       298 d~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  376 (401)
                      ++.+.+... ..-+|...|+.++|.|+   .+++++.|.+.++|+.+... +..+..  .....++.++..++...++++
T Consensus       203 ~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~-l~~y~~--h~g~~iw~~~~~~~~~~~vT~  276 (967)
T KOG0974|consen  203 PIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQ-LEVYDE--HSGKGIWKIAVPIGVIIKVTG  276 (967)
T ss_pred             ecccccccCcccccccceeEEEEeccc---eeEEeccceEEEEEecccce-ehhhhh--hhhcceeEEEEcCCceEEEee
Confidence            999877665 66679999999999998   58999999999999776433 333332  224569999999999999999


Q ss_pred             ecCCcEEEEEeccCc
Q psy17342        377 DEKGAITMFDVGEVG  391 (401)
Q Consensus       377 ~~dg~v~iw~~~~~~  391 (401)
                      +.||.+++|++....
T Consensus       277 g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  277 GNDSTLKLWDLNGRG  291 (967)
T ss_pred             ccCcchhhhhhhccc
Confidence            999999999997754

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=2.3e-13  Score=122.12  Aligned_cols=223  Identities=11%  Similarity=0.058  Sum_probs=145.7

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC--
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG--  141 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg--  141 (401)
                      +...+.+.+|+|||+.|+..++..       .+..|.+|++.+++...  .....+.+..++|+|++..++++.+.+|  
T Consensus       197 ~~~~~~~p~wSPDG~~la~~s~~~-------g~~~i~i~dl~~G~~~~--l~~~~~~~~~~~~SPDG~~La~~~~~~g~~  267 (429)
T PRK03629        197 SPQPLMSPAWSPDGSKLAYVTFES-------GRSALVIQTLANGAVRQ--VASFPRHNGAPAFSPDGSKLAFALSKTGSL  267 (429)
T ss_pred             CCCceeeeEEcCCCCEEEEEEecC-------CCcEEEEEECCCCCeEE--ccCCCCCcCCeEECCCCCEEEEEEcCCCCc
Confidence            345789999999999999876421       35689999998765322  2223445667899999966666655555  


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC-CcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND-GRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      .|.+||+.++....       +..+...+....|  +|+++.|+..+.+ +...+|.++.......  .+..     ...
T Consensus       268 ~I~~~d~~tg~~~~-------lt~~~~~~~~~~w--SPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~--~lt~-----~~~  331 (429)
T PRK03629        268 NLYVMDLASGQIRQ-------VTDGRSNNTEPTW--FPDSQNLAYTSDQAGRPQVYKVNINGGAPQ--RITW-----EGS  331 (429)
T ss_pred             EEEEEECCCCCEEE-------ccCCCCCcCceEE--CCCCCEEEEEeCCCCCceEEEEECCCCCeE--Eeec-----CCC
Confidence            48889998765321       1233445677888  9999988777654 5556664432111111  1111     223


Q ss_pred             ceEEEEeccCCCCeEEEEcCC---ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCe---E
Q psy17342        221 AVLSLAFPQNDVNNFVVGCED---GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWS---V  294 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d---~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~---i  294 (401)
                      ......|+ |+++.++..+.+   ..|++||+.+..   ...+.. ........|+|+      +..|+.++.++.   +
T Consensus       332 ~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~~g~---~~~Lt~-~~~~~~p~~SpD------G~~i~~~s~~~~~~~l  400 (429)
T PRK03629        332 QNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLATGG---VQVLTD-TFLDETPSIAPN------GTMVIYSSSQGMGSVL  400 (429)
T ss_pred             CccCEEEC-CCCCEEEEEEccCCCceEEEEECCCCC---eEEeCC-CCCCCCceECCC------CCEEEEEEcCCCceEE
Confidence            35578899 788888776543   358888887543   223332 122346789998      788888887664   6


Q ss_pred             EEEEeeCCCceEEEeecCCceEEEEECCC
Q psy17342        295 KLWNIKENKPVHSFNEFRDYVMDVQWSPI  323 (401)
Q Consensus       295 ~iwd~~~~~~~~~~~~~~~~v~~v~~~~~  323 (401)
                      .++++ +++....+..|.+.+...+|+|-
T Consensus       401 ~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        401 NLVST-DGRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             EEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence            66676 46667778888888999999983

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.61  E-value=1.8e-11  Score=106.88  Aligned_cols=286  Identities=11%  Similarity=0.117  Sum_probs=175.8

Q ss_pred             CCcEEEEEeCc--CCCCCceEEEecCCCeeEEEEeCCCCceEEEEec----CCeEEEEECCCC--CCCceeeccccccCC
Q psy17342         95 PDGVCLIWNTK--FKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTY----SGQIVLWDTRVQ--KKTPVHRTPLSVMAH  166 (401)
Q Consensus        95 ~d~~v~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~----dg~v~iw~~~~~--~~~~~~~~~~~~~~~  166 (401)
                      ..+.|.+|+++  +++...............++++|++ ++|++...    ++.|..|++...  .......    ....
T Consensus        11 ~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~-~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~----~~~~   85 (345)
T PF10282_consen   11 KGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDG-RRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS----VPSG   85 (345)
T ss_dssp             SSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTS-SEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE----EEES
T ss_pred             CCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCC-CEEEEEEccccCCCCEEEEEECCCcceeEEeee----eccC
Confidence            34889999884  3333322323345677889999977 56666555    578999998775  2222211    1113


Q ss_pred             CCcEEEEEEeecCCceEEEEEe-CCCcEEEeeccCCCCCcccccccc-----c-cccCCccceEEEEeccCCCCeEEEE-
Q psy17342        167 THPVFCMSVIGTQNAHNLISIS-NDGRLCSWSLEMLSSPQETRDLQY-----N-NKQTKNLAVLSLAFPQNDVNNFVVG-  238 (401)
Q Consensus       167 ~~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~-----~-~~~~~~~~v~~~~~~~~~~~~l~~~-  238 (401)
                      ......+++  ++++.+|+++. .+|.+.++++...+..........     . ..........++.++ |+++++++. 
T Consensus        86 g~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~-pdg~~v~v~d  162 (345)
T PF10282_consen   86 GSSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS-PDGRFVYVPD  162 (345)
T ss_dssp             SSCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE--TTSSEEEEEE
T ss_pred             CCCcEEEEE--ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC-CCCCEEEEEe
Confidence            334456777  89999888886 488999999986433322211110     0 001133456788999 788877765 


Q ss_pred             cCCceEEEEeCCCCCCCc--eeeec-CCCCceeeeecCccCCCCCCCcEE-EEEeCCCeEEEEEee--CCC--ceEEEee
Q psy17342        239 CEDGNVYSACRHGNKAGN--VECYE-GHEGPVVGLSSHRAQGHIDFSHLY-LTSSYDWSVKLWNIK--ENK--PVHSFNE  310 (401)
Q Consensus       239 ~~d~~i~~~~~~~~~~~~--~~~~~-~~~~~v~~i~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~--~~~--~~~~~~~  310 (401)
                      -....|++|++......+  ...+. .....-..+.|+|+      ++++ ++.-.+++|.++++.  +++  .+..+..
T Consensus       163 lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pd------g~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~  236 (345)
T PF10282_consen  163 LGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPD------GKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST  236 (345)
T ss_dssp             TTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TT------SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred             cCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCC------cCEEEEecCCCCcEEEEeecccCCceeEEEEeee
Confidence            345579999887554322  12222 23345678999998      4555 555558899999998  332  2222221


Q ss_pred             c------CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC-CCCcceEEeecCCCCeEEEEecCCCcEEEEEe-cCCcE
Q psy17342        311 F------RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD-TEVPATSAIVEGAPALSRVTWTPNGTQLCVGD-EKGAI  382 (401)
Q Consensus       311 ~------~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~v  382 (401)
                      .      ......++++|+|++++++....+.|.+|++... ..+.............+.++++|+|++|+++. .++.|
T Consensus       237 ~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v  316 (345)
T PF10282_consen  237 LPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTV  316 (345)
T ss_dssp             CETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEE
T ss_pred             ccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeE
Confidence            1      1257889999999977777778889999999432 23333333223345578999999999998876 55689


Q ss_pred             EEEEec--cCccce
Q psy17342        383 TMFDVG--EVGIAC  394 (401)
Q Consensus       383 ~iw~~~--~~~~~~  394 (401)
                      .+|++.  ++.+..
T Consensus       317 ~vf~~d~~tG~l~~  330 (345)
T PF10282_consen  317 SVFDIDPDTGKLTP  330 (345)
T ss_dssp             EEEEEETTTTEEEE
T ss_pred             EEEEEeCCCCcEEE
Confidence            999885  554443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1354|consensus

Probab=99.60  E-value=1.5e-13  Score=110.90  Aligned_cols=264  Identities=14%  Similarity=0.210  Sum_probs=174.1

Q ss_pred             cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCC------------CCcEEEEEEeecCCceEE
Q psy17342        117 CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH------------THPVFCMSVIGTQNAHNL  184 (401)
Q Consensus       117 ~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~l  184 (401)
                      ...-+.++.|...| .+|++|..+|.|.++.-...... .......++.|            ...|..+.|....+...+
T Consensus        24 eadiis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F  101 (433)
T KOG1354|consen   24 EADIISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF  101 (433)
T ss_pred             hhcceeeEEeeccc-ceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence            35678899999977 79999999999999975543321 11111122333            346888999666667788


Q ss_pred             EEEeCCCcEEEeeccCCCCCcccc--------------ccc--------------cccccCCccceEEEEeccCCCCeEE
Q psy17342        185 ISISNDGRLCSWSLEMLSSPQETR--------------DLQ--------------YNNKQTKNLAVLSLAFPQNDVNNFV  236 (401)
Q Consensus       185 ~s~~~dg~i~~wd~~~~~~~~~~~--------------~~~--------------~~~~~~~~~~v~~~~~~~~~~~~l~  236 (401)
                      +..+.|.+|++|.+..........              .++              ......|..-|.+++++ .|...++
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N-sD~Et~l  180 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN-SDKETFL  180 (433)
T ss_pred             EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec-CccceEe
Confidence            888999999999886422211000              000              00134678889999999 7777777


Q ss_pred             EEcCCceEEEEeCCCCCCC-ceeeecCCC-----CceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc------
Q psy17342        237 VGCEDGNVYSACRHGNKAG-NVECYEGHE-----GPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP------  304 (401)
Q Consensus       237 ~~~~d~~i~~~~~~~~~~~-~~~~~~~~~-----~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------  304 (401)
                      ++ .|=.|.+|++.-.... -+...+++.     .-|++..|+|..     .++|+-.+..|+|++-|++....      
T Consensus       181 SA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~-----cn~f~YSSSKGtIrLcDmR~~aLCd~hsK  254 (433)
T KOG1354|consen  181 SA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH-----CNVFVYSSSKGTIRLCDMRQSALCDAHSK  254 (433)
T ss_pred             ec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH-----ccEEEEecCCCcEEEeechhhhhhcchhh
Confidence            65 5678999988632211 122233333     458899999987     78899888999999999985321      


Q ss_pred             eEEE----------eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC-CCCcceEEeec---------CCCC---e
Q psy17342        305 VHSF----------NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD-TEVPATSAIVE---------GAPA---L  361 (401)
Q Consensus       305 ~~~~----------~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~---------~~~~---v  361 (401)
                      +...          ..--..|..+.|+++|+ ++++-.. -+|++||+... +++..+.....         ....   -
T Consensus       255 lfEepedp~~rsffseiIsSISDvKFs~sGr-yilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdK  332 (433)
T KOG1354|consen  255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGR-YILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDK  332 (433)
T ss_pred             hhccccCCcchhhHHHHhhhhhceEEccCCc-EEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhe
Confidence            1111          11123688999999998 5665432 68999999543 33322221100         0112   2


Q ss_pred             EEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        362 SRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       362 ~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      ..++|+-++.++++|+....+++|++..+.
T Consensus       333 Fec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  333 FECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             eEEEEcCCcceEecccccceEEEecCCCCc
Confidence            458899999999999999999999977664

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.7e-12  Score=116.48  Aligned_cols=217  Identities=11%  Similarity=0.047  Sum_probs=139.0

Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC---CCcEEEeeccCCCCCccccccccccccC
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN---DGRLCSWSLEMLSSPQETRDLQYNNKQT  217 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~  217 (401)
                      ..|.++|.+......       +..+...+.+.+|  +|+|+.|+..+.   +..+.+|++... ........       
T Consensus       179 ~~l~~~d~dg~~~~~-------lt~~~~~~~~p~w--SPDG~~la~~s~~~g~~~i~i~dl~~G-~~~~l~~~-------  241 (429)
T PRK03629        179 YELRVSDYDGYNQFV-------VHRSPQPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANG-AVRQVASF-------  241 (429)
T ss_pred             eeEEEEcCCCCCCEE-------eecCCCceeeeEE--cCCCCEEEEEEecCCCcEEEEEECCCC-CeEEccCC-------
Confidence            368889887665321       2345678899999  999998887643   346888998652 22222211       


Q ss_pred             CccceEEEEeccCCCCeEEEE-cCCc--eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC-CCe
Q psy17342        218 KNLAVLSLAFPQNDVNNFVVG-CEDG--NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DWS  293 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~~~-~~d~--~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~~  293 (401)
                       ...+..+.|+ |+++.|+.. +.+|  .|++||+.+..   ...+..+...+....|+|+      ++.|+..+. ++.
T Consensus       242 -~~~~~~~~~S-PDG~~La~~~~~~g~~~I~~~d~~tg~---~~~lt~~~~~~~~~~wSPD------G~~I~f~s~~~g~  310 (429)
T PRK03629        242 -PRHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNTEPTWFPD------SQNLAYTSDQAGR  310 (429)
T ss_pred             -CCCcCCeEEC-CCCCEEEEEEcCCCCcEEEEEECCCCC---EEEccCCCCCcCceEECCC------CCEEEEEeCCCCC
Confidence             1234467999 788887754 4444  58889987543   3344444556788999998      677766664 344


Q ss_pred             EEEE--EeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecC--CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC
Q psy17342        294 VKLW--NIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVA--GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN  369 (401)
Q Consensus       294 i~iw--d~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  369 (401)
                      ..||  |+.+++ ...+..+........|+|+|+.+++++..+  ..|.+||+.++... .+.    .........|+||
T Consensus       311 ~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt----~~~~~~~p~~SpD  384 (429)
T PRK03629        311 PQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT----DTFLDETPSIAPN  384 (429)
T ss_pred             ceEEEEECCCCC-eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeC----CCCCCCCceECCC
Confidence            4555  555544 344444444566789999998544444433  35888999876532 221    1122346789999


Q ss_pred             CcEEEEEecCCc---EEEEEeccCc
Q psy17342        370 GTQLCVGDEKGA---ITMFDVGEVG  391 (401)
Q Consensus       370 g~~l~~~~~dg~---v~iw~~~~~~  391 (401)
                      |++|+.++.++.   +.++++..+.
T Consensus       385 G~~i~~~s~~~~~~~l~~~~~~G~~  409 (429)
T PRK03629        385 GTMVIYSSSQGMGSVLNLVSTDGRF  409 (429)
T ss_pred             CCEEEEEEcCCCceEEEEEECCCCC
Confidence            999999888765   6677775543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=2.7e-12  Score=115.76  Aligned_cols=217  Identities=11%  Similarity=0.082  Sum_probs=137.9

Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC---CcEEEeeccCCCCCccccccccccccC
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND---GRLCSWSLEMLSSPQETRDLQYNNKQT  217 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~  217 (401)
                      ..|.+||.......       .+..+...+.+.+|  +|+++.|+..+.+   ..|.+||+.... .....   .     
T Consensus       184 ~~l~i~D~~g~~~~-------~lt~~~~~v~~p~w--SpDg~~la~~s~~~~~~~l~~~dl~~g~-~~~l~---~-----  245 (433)
T PRK04922        184 YALQVADSDGYNPQ-------TILRSAEPILSPAW--SPDGKKLAYVSFERGRSAIYVQDLATGQ-RELVA---S-----  245 (433)
T ss_pred             EEEEEECCCCCCce-------EeecCCCccccccC--CCCCCEEEEEecCCCCcEEEEEECCCCC-EEEec---c-----
Confidence            36889998654432       13456778889999  9999999987743   369999986522 21111   1     


Q ss_pred             CccceEEEEeccCCCCeEE-EEcCCc--eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC-CCe
Q psy17342        218 KNLAVLSLAFPQNDVNNFV-VGCEDG--NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DWS  293 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~-~~~~d~--~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~~  293 (401)
                      ......+..|+ |+++.++ +.+.+|  .|++||+.+..   ...+..+.......+|+|+      ++.|+..+. ++.
T Consensus       246 ~~g~~~~~~~S-pDG~~l~~~~s~~g~~~Iy~~d~~~g~---~~~lt~~~~~~~~~~~spD------G~~l~f~sd~~g~  315 (433)
T PRK04922        246 FRGINGAPSFS-PDGRRLALTLSRDGNPEIYVMDLGSRQ---LTRLTNHFGIDTEPTWAPD------GKSIYFTSDRGGR  315 (433)
T ss_pred             CCCCccCceEC-CCCCEEEEEEeCCCCceEEEEECCCCC---eEECccCCCCccceEECCC------CCEEEEEECCCCC
Confidence            22234578999 7887765 445555  58999987543   3445555555677899998      677776653 444


Q ss_pred             --EEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCC--EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC
Q psy17342        294 --VKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAG--RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN  369 (401)
Q Consensus       294 --i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  369 (401)
                        |.++|+.+++. ..+..+.......+|+|+|+.++++...++  .|.+||+.+++.. .+    .+........|+||
T Consensus       316 ~~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~L----t~~~~~~~p~~spd  389 (433)
T PRK04922        316 PQIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TL----TPGSLDESPSFAPN  389 (433)
T ss_pred             ceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-EC----CCCCCCCCceECCC
Confidence              66666655543 333333344557899999985444433333  6999999876533 21    22223456799999


Q ss_pred             CcEEEEEecC---CcEEEEEeccCc
Q psy17342        370 GTQLCVGDEK---GAITMFDVGEVG  391 (401)
Q Consensus       370 g~~l~~~~~d---g~v~iw~~~~~~  391 (401)
                      |++|+..+.+   +.|+++++..+.
T Consensus       390 G~~i~~~s~~~g~~~L~~~~~~g~~  414 (433)
T PRK04922        390 GSMVLYATREGGRGVLAAVSTDGRV  414 (433)
T ss_pred             CCEEEEEEecCCceEEEEEECCCCc
Confidence            9988776653   357777876543

>KOG0280|consensus

Probab=99.57  E-value=4.3e-13  Score=106.05  Aligned_cols=240  Identities=18%  Similarity=0.200  Sum_probs=165.4

Q ss_pred             cCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecC-Cce-EEEEEeCCCcEEEeeccCCCCCcccccccccccc
Q psy17342        139 YSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ-NAH-NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQ  216 (401)
Q Consensus       139 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  216 (401)
                      ..|.+.+|++...+..+. .. + .......+..+.|...+ ++. .++-+-.+|.|.++.............+..  ..
T Consensus        44 R~Gkl~Lys~~d~~~~~l-~~-~-q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--~k  118 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPL-DT-L-QCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--KK  118 (339)
T ss_pred             eccceEEEeecccccCcc-ce-e-eeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch--hh
Confidence            457899999988776541 11 1 12334566777774322 333 566677889999998754222111111111  00


Q ss_pred             CCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEE
Q psy17342        217 TKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKL  296 (401)
Q Consensus       217 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~i  296 (401)
                      .......++.|+ +.+..++++-.+|.+.+-+......+.+..+++|.-++....|+-.+     .+++.+|+.|+.+..
T Consensus       119 i~~~~~lslD~~-~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~-----pnlvytGgDD~~l~~  192 (339)
T KOG0280|consen  119 ISVVEALSLDIS-TSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKE-----PNLVYTGGDDGSLSC  192 (339)
T ss_pred             hhheeeeEEEee-ccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCC-----CceEEecCCCceEEE
Confidence            111234577888 77888999999999986655544444455788999999999998776     789999999999999


Q ss_pred             EEeeC-CCceEE-EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC--CcE
Q psy17342        297 WNIKE-NKPVHS-FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN--GTQ  372 (401)
Q Consensus       297 wd~~~-~~~~~~-~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~  372 (401)
                      ||++. ++.+.. .+.|...|.++.-+|..+.++++|++|..|++||.++-.+ +.+..  .-.+.|+.+.++|.  +..
T Consensus       193 ~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k-Pl~~~--~v~GGVWRi~~~p~~~~~l  269 (339)
T KOG0280|consen  193 WDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK-PLFKA--KVGGGVWRIKHHPEIFHRL  269 (339)
T ss_pred             EEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC-ccccC--ccccceEEEEecchhhhHH
Confidence            99993 444443 4568889999999998888999999999999999995332 33322  22477999999996  445


Q ss_pred             EEEEecCCcEEEEEeccCccc
Q psy17342        373 LCVGDEKGAITMFDVGEVGIA  393 (401)
Q Consensus       373 l~~~~~dg~v~iw~~~~~~~~  393 (401)
                      |+++-..| .+|-+++.+..+
T Consensus       270 L~~CMh~G-~ki~~~~~~~~e  289 (339)
T KOG0280|consen  270 LAACMHNG-AKILDSSDKVLE  289 (339)
T ss_pred             HHHHHhcC-ceEEEecccccc
Confidence            66666666 788888776544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=2.6e-12  Score=116.05  Aligned_cols=219  Identities=13%  Similarity=0.084  Sum_probs=142.6

Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC---CCcEEEeeccCCCCCccccccccccccC
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN---DGRLCSWSLEMLSSPQETRDLQYNNKQT  217 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~  217 (401)
                      ..|.++|.+.....       .+..|...+.+.+|  +|+++.|+..+.   +..|.+||+.... ...   +.     .
T Consensus       182 ~~l~~~d~dg~~~~-------~lt~~~~~v~~p~w--SpDG~~lay~s~~~g~~~i~~~dl~~g~-~~~---l~-----~  243 (435)
T PRK05137        182 KRLAIMDQDGANVR-------YLTDGSSLVLTPRF--SPNRQEITYMSYANGRPRVYLLDLETGQ-REL---VG-----N  243 (435)
T ss_pred             eEEEEECCCCCCcE-------EEecCCCCeEeeEE--CCCCCEEEEEEecCCCCEEEEEECCCCc-EEE---ee-----c
Confidence            37888888655432       23467788999999  999998888764   4579999997532 211   11     1


Q ss_pred             CccceEEEEeccCCCCeEE-EEcCCce--EEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC-CC-
Q psy17342        218 KNLAVLSLAFPQNDVNNFV-VGCEDGN--VYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DW-  292 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~-~~~~d~~--i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~-  292 (401)
                      ....+...+|+ |+++.|+ +.+.++.  |+++|+.+..   ...+..+........|+|+      ++.++..+. ++ 
T Consensus       244 ~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~Lt~~~~~~~~~~~spD------G~~i~f~s~~~g~  313 (435)
T PRK05137        244 FPGMTFAPRFS-PDGRKVVMSLSQGGNTDIYTMDLRSGT---TTRLTDSPAIDTSPSYSPD------GSQIVFESDRSGS  313 (435)
T ss_pred             CCCcccCcEEC-CCCCEEEEEEecCCCceEEEEECCCCc---eEEccCCCCccCceeEcCC------CCEEEEEECCCCC
Confidence            33456788999 7888765 4455554  7778886543   3445556666678899998      677776653 33 


Q ss_pred             -eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecC--CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC
Q psy17342        293 -SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVA--GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN  369 (401)
Q Consensus       293 -~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  369 (401)
                       .|.++|+..++. ..+..+...+....|+|+|+.++++....  ..|.+||+..+.. ..+    .....+....|+||
T Consensus       314 ~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~l----t~~~~~~~p~~spD  387 (435)
T PRK05137        314 PQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RIL----TSGFLVEGPTWAPN  387 (435)
T ss_pred             CeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eec----cCCCCCCCCeECCC
Confidence             688888765543 44544455677789999998544433222  3688888765432 222    12234667899999


Q ss_pred             CcEEEEEecC------CcEEEEEeccCccc
Q psy17342        370 GTQLCVGDEK------GAITMFDVGEVGIA  393 (401)
Q Consensus       370 g~~l~~~~~d------g~v~iw~~~~~~~~  393 (401)
                      |+.|+..+.+      ..++++++..+..+
T Consensus       388 G~~i~~~~~~~~~~~~~~L~~~dl~g~~~~  417 (435)
T PRK05137        388 GRVIMFFRQTPGSGGAPKLYTVDLTGRNER  417 (435)
T ss_pred             CCEEEEEEccCCCCCcceEEEEECCCCceE
Confidence            9988765543      25778888766433

>KOG1409|consensus

Probab=99.56  E-value=6e-13  Score=107.52  Aligned_cols=200  Identities=16%  Similarity=0.143  Sum_probs=137.3

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcC---CCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKF---KKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      .+++++.+.++...|+.+-          ..|++.-+.+..   ....++.-..|...+..+-|+-.. ..+++.+.|..
T Consensus        69 ~~~~~~~y~~e~~~L~vg~----------~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~  137 (404)
T KOG1409|consen   69 SPCSAMEYVSESRRLYVGQ----------DNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQ  137 (404)
T ss_pred             CCceEeeeeccceEEEEEE----------ecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccc
Confidence            6799999999998888887          789999888753   222333345578899999998744 67777777876


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      +.---.+.+.....+..       .....++.+    +-.+...|...|.|..-.+.. ........     +.+|...+
T Consensus       138 ~~~hc~e~~~~lg~Y~~-------~~~~t~~~~----d~~~~fvGd~~gqvt~lr~~~-~~~~~i~~-----~~~h~~~~  200 (404)
T KOG1409|consen  138 FAWHCTESGNRLGGYNF-------ETPASALQF----DALYAFVGDHSGQITMLKLEQ-NGCQLITT-----FNGHTGEV  200 (404)
T ss_pred             eEEEeeccCCcccceEe-------eccCCCCce----eeEEEEecccccceEEEEEee-cCCceEEE-----EcCcccce
Confidence            64333344332211100       001111111    111344555566666655542 11222222     45599999


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE  301 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  301 (401)
                      ++++|. +....+.+|..|..+.+||+-..+. ....+.+|...|..+...+.      -..+.+++.||.|.+||++.
T Consensus       201 ~~l~Wd-~~~~~LfSg~~d~~vi~wdigg~~g-~~~el~gh~~kV~~l~~~~~------t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  201 TCLKWD-PGQRLLFSGASDHSVIMWDIGGRKG-TAYELQGHNDKVQALSYAQH------TRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             EEEEEc-CCCcEEEeccccCceEEEeccCCcc-eeeeeccchhhhhhhhhhhh------heeeeeccCCCeEEEEeccc
Confidence            999999 7889999999999999999987665 45677889999999988877      58999999999999999864

>KOG0974|consensus

Probab=99.56  E-value=4.8e-12  Score=116.41  Aligned_cols=198  Identities=15%  Similarity=0.251  Sum_probs=148.0

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCee---EEEEeCCCCceEEEEecCCe
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVL---SCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~~l~~g~~dg~  142 (401)
                      +.|....+.-+.+.++.+.          .++.+.+||...+....+..-.......   -+-+++ .+-++++|+.-+.
T Consensus        88 ~wi~g~~l~~e~k~i~l~~----------~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~  156 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVT----------SRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGE  156 (967)
T ss_pred             ccccccchhhhcceEEEEE----------cCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEecccccc
Confidence            3455555666677788888          7899999999865444332211111112   223344 3368999999999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      |.+|+....+ .+     ..+.+|.+.|.++.|  +.+|.++++.|+|.++++|++++......  .     ..+|...|
T Consensus       157 iivW~~~~dn-~p-----~~l~GHeG~iF~i~~--s~dg~~i~s~SdDRsiRlW~i~s~~~~~~--~-----~fgHsaRv  221 (967)
T KOG0974|consen  157 IIVWKPHEDN-KP-----IRLKGHEGSIFSIVT--SLDGRYIASVSDDRSIRLWPIDSREVLGC--T-----GFGHSARV  221 (967)
T ss_pred             EEEEeccccC-Cc-----ceecccCCceEEEEE--ccCCcEEEEEecCcceeeeecccccccCc--c-----ccccccee
Confidence            9999998332 22     235899999999999  99999999999999999999987443331  1     45699999


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCC-CceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHE-GPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE  301 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  301 (401)
                      ..+.+. ++  .+++++.|...++|+.+...   +..+.+|. ..|..++..+.      ....+|++.|+.+++||+..
T Consensus       222 w~~~~~-~n--~i~t~gedctcrvW~~~~~~---l~~y~~h~g~~iw~~~~~~~------~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  222 WACCFL-PN--RIITVGEDCTCRVWGVNGTQ---LEVYDEHSGKGIWKIAVPIG------VIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EEEEec-cc--eeEEeccceEEEEEecccce---ehhhhhhhhcceeEEEEcCC------ceEEEeeccCcchhhhhhhc
Confidence            999999 44  99999999999999776543   44677775 46889999887      68899999999999998743

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.54  E-value=8.2e-13  Score=104.53  Aligned_cols=152  Identities=18%  Similarity=0.334  Sum_probs=106.7

Q ss_pred             EEEEeecCCceEEEEEeC----------CCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEE--Ec
Q psy17342        172 CMSVIGTQNAHNLISISN----------DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV--GC  239 (401)
Q Consensus       172 ~~~~~~~~~~~~l~s~~~----------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~  239 (401)
                      .+.|  +++|+.|+.-..          -+...+|.++....+...+.+.      ...+|.+++|+ |+++.|++  |.
T Consensus        10 ~~~W--~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~------~~~~I~~~~Ws-P~g~~favi~g~   80 (194)
T PF08662_consen   10 KLHW--QPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK------KEGPIHDVAWS-PNGNEFAVIYGS   80 (194)
T ss_pred             EEEe--cccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc------CCCceEEEEEC-cCCCEEEEEEcc
Confidence            4556  888876665433          1346667665444444444433      23469999999 67777654  44


Q ss_pred             CCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC---CCeEEEEEeeCCCceEEEeecCCceE
Q psy17342        240 EDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY---DWSVKLWNIKENKPVHSFNEFRDYVM  316 (401)
Q Consensus       240 ~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~  316 (401)
                      .+..|.+||.+   ...+..+  +...++.+.|+|.      ++++++++.   .|.|.+||.++.+.+.++..  ..+.
T Consensus        81 ~~~~v~lyd~~---~~~i~~~--~~~~~n~i~wsP~------G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t  147 (194)
T PF08662_consen   81 MPAKVTLYDVK---GKKIFSF--GTQPRNTISWSPD------GRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDAT  147 (194)
T ss_pred             CCcccEEEcCc---ccEeEee--cCCCceEEEECCC------CCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEE
Confidence            56789999996   2244454  3567789999999      799998875   46799999998888877653  3478


Q ss_pred             EEEECCCCCcEEEEEe------cCCEEEEEeCCCCCC
Q psy17342        317 DVQWSPINPALFATVE------VAGRVDLWNLNLDTE  347 (401)
Q Consensus       317 ~v~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~  347 (401)
                      .++|+|+|++ |+++.      .|+.++||+.. ++.
T Consensus       148 ~~~WsPdGr~-~~ta~t~~r~~~dng~~Iw~~~-G~~  182 (194)
T PF08662_consen  148 DVEWSPDGRY-LATATTSPRLRVDNGFKIWSFQ-GRL  182 (194)
T ss_pred             EEEEcCCCCE-EEEEEeccceeccccEEEEEec-CeE
Confidence            9999999984 55554      37889999986 443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=1.1e-12  Score=118.35  Aligned_cols=220  Identities=12%  Similarity=0.061  Sum_probs=141.9

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC--
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG--  141 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg--  141 (401)
                      +...+.+.+|+|+|+.|+.+++..       ....|.+||+.+++...  .....+...+.+|+|++..++++.+.+|  
T Consensus       202 ~~~~v~~p~wSpDg~~la~~s~~~-------~~~~l~~~dl~~g~~~~--l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~  272 (433)
T PRK04922        202 SAEPILSPAWSPDGKKLAYVSFER-------GRSAIYVQDLATGQREL--VASFRGINGAPSFSPDGRRLALTLSRDGNP  272 (433)
T ss_pred             CCCccccccCCCCCCEEEEEecCC-------CCcEEEEEECCCCCEEE--eccCCCCccCceECCCCCEEEEEEeCCCCc
Confidence            456788999999999999888421       34579999998765332  2223455568899999976766666665  


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-CCc--EEEeeccCCCCCccccccccccccCC
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-DGR--LCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      .|.+||+.+++...       +..+.......+|  +|++..|+.++. +|.  |.++++...  ....  +..     .
T Consensus       273 ~Iy~~d~~~g~~~~-------lt~~~~~~~~~~~--spDG~~l~f~sd~~g~~~iy~~dl~~g--~~~~--lt~-----~  334 (433)
T PRK04922        273 EIYVMDLGSRQLTR-------LTNHFGIDTEPTW--APDGKSIYFTSDRGGRPQIYRVAASGG--SAER--LTF-----Q  334 (433)
T ss_pred             eEEEEECCCCCeEE-------CccCCCCccceEE--CCCCCEEEEEECCCCCceEEEEECCCC--CeEE--eec-----C
Confidence            59999998765321       2334444567788  999998887764 555  444454431  1111  111     1


Q ss_pred             ccceEEEEeccCCCCeEEEEcCCc---eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC---C
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCEDG---NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD---W  292 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d~---~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d---~  292 (401)
                      .......+|+ ++++.++..+.++   .|++|++.+...   ..+. +........|+|+      ++.++..+.+   +
T Consensus       335 g~~~~~~~~S-pDG~~Ia~~~~~~~~~~I~v~d~~~g~~---~~Lt-~~~~~~~p~~spd------G~~i~~~s~~~g~~  403 (433)
T PRK04922        335 GNYNARASVS-PDGKKIAMVHGSGGQYRIAVMDLSTGSV---RTLT-PGSLDESPSFAPN------GSMVLYATREGGRG  403 (433)
T ss_pred             CCCccCEEEC-CCCCEEEEEECCCCceeEEEEECCCCCe---EECC-CCCCCCCceECCC------CCEEEEEEecCCce
Confidence            1234468999 7898888765433   589999865432   2332 2224456789998      6776665542   3


Q ss_pred             eEEEEEeeCCCceEEEeecCCceEEEEECC
Q psy17342        293 SVKLWNIKENKPVHSFNEFRDYVMDVQWSP  322 (401)
Q Consensus       293 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  322 (401)
                      .|.++++. +.....+..+.+.+...+|+|
T Consensus       404 ~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        404 VLAAVSTD-GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             EEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence            57777774 555666666667778888887

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=4.8e-12  Score=113.76  Aligned_cols=215  Identities=12%  Similarity=0.107  Sum_probs=131.6

Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC---CcEEEeeccCCCCCccccccccccccC
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND---GRLCSWSLEMLSSPQETRDLQYNNKQT  217 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~  217 (401)
                      ..|.++|.......       .+..+...+.+.+|  +|+++.|+..+.+   ..|.+||+.... ...   +..     
T Consensus       176 ~~L~~~D~dG~~~~-------~l~~~~~~v~~p~w--SPDG~~la~~s~~~~~~~I~~~dl~~g~-~~~---l~~-----  237 (427)
T PRK02889        176 YQLQISDADGQNAQ-------SALSSPEPIISPAW--SPDGTKLAYVSFESKKPVVYVHDLATGR-RRV---VAN-----  237 (427)
T ss_pred             cEEEEECCCCCCce-------EeccCCCCcccceE--cCCCCEEEEEEccCCCcEEEEEECCCCC-EEE---eec-----
Confidence            35667776443321       12456778889999  9999999887643   359999987532 111   111     


Q ss_pred             CccceEEEEeccCCCCeEE-EEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC-CCeEE
Q psy17342        218 KNLAVLSLAFPQNDVNNFV-VGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DWSVK  295 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~-~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~~i~  295 (401)
                      ........+|+ |+++.|+ +.+.++...+|..+.... ....+..+........|+|+      ++.|+..+. ++...
T Consensus       238 ~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~~~~-~~~~lt~~~~~~~~~~wSpD------G~~l~f~s~~~g~~~  309 (427)
T PRK02889        238 FKGSNSAPAWS-PDGRTLAVALSRDGNSQIYTVNADGS-GLRRLTQSSGIDTEPFFSPD------GRSIYFTSDRGGAPQ  309 (427)
T ss_pred             CCCCccceEEC-CCCCEEEEEEccCCCceEEEEECCCC-CcEECCCCCCCCcCeEEcCC------CCEEEEEecCCCCcE
Confidence            22345678999 7888776 456777755554432222 23445545555677889998      676665553 56667


Q ss_pred             EEEee--CCCceEEEeecCCceEEEEECCCCCcEEEEEecCC---EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC
Q psy17342        296 LWNIK--ENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAG---RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG  370 (401)
Q Consensus       296 iwd~~--~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  370 (401)
                      ||.+.  .++ ...+..+.......+|+|+|+. ++..+.++   .|.+||+.+++.... .    .........|+|||
T Consensus       310 Iy~~~~~~g~-~~~lt~~g~~~~~~~~SpDG~~-Ia~~s~~~g~~~I~v~d~~~g~~~~l-t----~~~~~~~p~~spdg  382 (427)
T PRK02889        310 IYRMPASGGA-AQRVTFTGSYNTSPRISPDGKL-LAYISRVGGAFKLYVQDLATGQVTAL-T----DTTRDESPSFAPNG  382 (427)
T ss_pred             EEEEECCCCc-eEEEecCCCCcCceEECCCCCE-EEEEEccCCcEEEEEEECCCCCeEEc-c----CCCCccCceECCCC
Confidence            77654  333 2333322334456889999984 55444333   699999987653221 1    12234578999999


Q ss_pred             cEEEEEecCC---cEEEEEec
Q psy17342        371 TQLCVGDEKG---AITMFDVG  388 (401)
Q Consensus       371 ~~l~~~~~dg---~v~iw~~~  388 (401)
                      +.|+.++.++   .+++.++.
T Consensus       383 ~~l~~~~~~~g~~~l~~~~~~  403 (427)
T PRK02889        383 RYILYATQQGGRSVLAAVSSD  403 (427)
T ss_pred             CEEEEEEecCCCEEEEEEECC
Confidence            9988776544   25555553

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.53  E-value=4.4e-10  Score=92.26  Aligned_cols=282  Identities=12%  Similarity=0.083  Sum_probs=177.9

Q ss_pred             CCcEEEEEeCcC--CCCCceEEEecCCCeeEEEEeCCCCceEEEEec---CCeEEEEECCC--CCCCceeeccccccCCC
Q psy17342         95 PDGVCLIWNTKF--KKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTY---SGQIVLWDTRV--QKKTPVHRTPLSVMAHT  167 (401)
Q Consensus        95 ~d~~v~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~---dg~v~iw~~~~--~~~~~~~~~~~~~~~~~  167 (401)
                      .+.-|.+|++.+  ++..........+.++-|+|+|+. +.|.++-.   +|.|..|.++.  ++....-+.  ...+  
T Consensus        14 ~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~--~~~g--   88 (346)
T COG2706          14 ESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ--TLPG--   88 (346)
T ss_pred             CCCceEEEEEeCcccccchhhhccccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc--ccCC--
Confidence            367899999974  333333344567889999999976 56666544   47788888875  333222221  1122  


Q ss_pred             CcEEEEEEeecCCceEEEEEeC-CCcEEEeeccCCCCCcccccccc-ccccCC----ccceEEEEeccCCCCeEEEEcC-
Q psy17342        168 HPVFCMSVIGTQNAHNLISISN-DGRLCSWSLEMLSSPQETRDLQY-NNKQTK----NLAVLSLAFPQNDVNNFVVGCE-  240 (401)
Q Consensus       168 ~~v~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~-~~~~~~----~~~v~~~~~~~~~~~~l~~~~~-  240 (401)
                      .+-..+++  ++++++++++.. .|.|.++-++..+.......... ....+|    ...+-+..+. |+++++++... 
T Consensus        89 ~~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t-P~~~~l~v~DLG  165 (346)
T COG2706          89 SPPCYVSV--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT-PDGRYLVVPDLG  165 (346)
T ss_pred             CCCeEEEE--CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC-CCCCEEEEeecC
Confidence            22367777  889988888765 57899999876554444433222 001111    1126677888 78888877653 


Q ss_pred             CceEEEEeCCCCCCCceeeec-CCCCceeeeecCccCCCCCCCcEEEEEeC-CCeEEEEEeeCC-CceEEEee-------
Q psy17342        241 DGNVYSACRHGNKAGNVECYE-GHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DWSVKLWNIKEN-KPVHSFNE-------  310 (401)
Q Consensus       241 d~~i~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~-~~~~~~~~-------  310 (401)
                      -..|.+|++............ .....-+-|.|+|+      +++.....+ +++|.+|..... ..+..++.       
T Consensus       166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn------~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~d  239 (346)
T COG2706         166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPN------GKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPED  239 (346)
T ss_pred             CceEEEEEcccCccccccccccCCCCCcceEEEcCC------CcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccc
Confidence            346889988754332222211 22344578999999      677666555 999999999763 22222221       


Q ss_pred             --cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC-CcceEEeecCCCCeEEEEecCCCcEEEEEecCC-cEEEEE
Q psy17342        311 --FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE-VPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG-AITMFD  386 (401)
Q Consensus       311 --~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-~v~iw~  386 (401)
                        ......+|..+|+|+.+.++--....|.+|.+..... +........+....+.+.|++.|++|+++..++ .|.+|.
T Consensus       240 F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~  319 (346)
T COG2706         240 FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFE  319 (346)
T ss_pred             cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEE
Confidence              1346778999999985544444456888888875533 333333333344578899999999999887654 588888


Q ss_pred             eccC
Q psy17342        387 VGEV  390 (401)
Q Consensus       387 ~~~~  390 (401)
                      +...
T Consensus       320 ~d~~  323 (346)
T COG2706         320 RDKE  323 (346)
T ss_pred             EcCC
Confidence            7643

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=7.4e-12  Score=112.57  Aligned_cols=242  Identities=10%  Similarity=0.048  Sum_probs=142.6

Q ss_pred             CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC--CeEEEEECCCCCCCceeeccccccCCCCcEEEE
Q psy17342         96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS--GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCM  173 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  173 (401)
                      ...|.++|.+ +.... ....+...+.+.+|+|++..++++...+  ..|.+||+.+++....       ....+.+...
T Consensus       175 ~~~L~~~D~d-G~~~~-~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-------~~~~g~~~~~  245 (427)
T PRK02889        175 RYQLQISDAD-GQNAQ-SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-------ANFKGSNSAP  245 (427)
T ss_pred             ccEEEEECCC-CCCce-EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-------ecCCCCccce
Confidence            3567777875 33222 2334567899999999985444443222  4599999987764321       2233445678


Q ss_pred             EEeecCCceEEE-EEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC-CceEEEEeCCC
Q psy17342        174 SVIGTQNAHNLI-SISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE-DGNVYSACRHG  251 (401)
Q Consensus       174 ~~~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~~~~~~~  251 (401)
                      +|  +|++..|+ +.+.+|...+|.++.....  ...+.     .+........|+ ++++.++..+. ++...+|.+..
T Consensus       246 ~~--SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~~lt-----~~~~~~~~~~wS-pDG~~l~f~s~~~g~~~Iy~~~~  315 (427)
T PRK02889        246 AW--SPDGRTLAVALSRDGNSQIYTVNADGSG--LRRLT-----QSSGIDTEPFFS-PDGRSIYFTSDRGGAPQIYRMPA  315 (427)
T ss_pred             EE--CCCCCEEEEEEccCCCceEEEEECCCCC--cEECC-----CCCCCCcCeEEc-CCCCEEEEEecCCCCcEEEEEEC
Confidence            88  99998876 5677888778776532221  11121     133345667899 78888776554 45555554432


Q ss_pred             CCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC---eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEE
Q psy17342        252 NKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW---SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALF  328 (401)
Q Consensus       252 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l  328 (401)
                      .... ...+..+........|+|+      +++++..+.++   .|.+||+.+++.. .+.. ........|+|+|+.++
T Consensus       316 ~~g~-~~~lt~~g~~~~~~~~SpD------G~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~-~~~~~~p~~spdg~~l~  386 (427)
T PRK02889        316 SGGA-AQRVTFTGSYNTSPRISPD------GKLLAYISRVGGAFKLYVQDLATGQVT-ALTD-TTRDESPSFAPNGRYIL  386 (427)
T ss_pred             CCCc-eEEEecCCCCcCceEECCC------CCEEEEEEccCCcEEEEEEECCCCCeE-EccC-CCCccCceECCCCCEEE
Confidence            1211 1222212233446789998      78887766544   6999999877643 3332 23346789999998655


Q ss_pred             EEEecCCE--EEEEeCCCCCCCcceEEeecCCCCeEEEEecCC
Q psy17342        329 ATVEVAGR--VDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN  369 (401)
Q Consensus       329 ~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  369 (401)
                      ++....|.  +.+.++. +.....+.   .+...+...+|+|-
T Consensus       387 ~~~~~~g~~~l~~~~~~-g~~~~~l~---~~~g~~~~p~wsp~  425 (427)
T PRK02889        387 YATQQGGRSVLAAVSSD-GRIKQRLS---VQGGDVREPSWGPF  425 (427)
T ss_pred             EEEecCCCEEEEEEECC-CCceEEee---cCCCCCCCCccCCC
Confidence            55544443  5555553 33222221   23445667788774

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=1.1e-11  Score=111.93  Aligned_cols=237  Identities=13%  Similarity=0.112  Sum_probs=147.1

Q ss_pred             CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEe--cCCeEEEEECCCCCCCceeeccccccCCCCcEEEE
Q psy17342         96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGT--YSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCM  173 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  173 (401)
                      ...|.++|.+... . +....+...+.+.+|+|++..++++..  .+..|.+||+.+++...       +..+.+.+...
T Consensus       181 ~~~l~~~d~dg~~-~-~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-------l~~~~g~~~~~  251 (435)
T PRK05137        181 IKRLAIMDQDGAN-V-RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-------VGNFPGMTFAP  251 (435)
T ss_pred             ceEEEEECCCCCC-c-EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-------eecCCCcccCc
Confidence            3578888886432 2 233455778999999999855444432  24679999998775421       23455567788


Q ss_pred             EEeecCCceEEE-EEeCCCc--EEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC-Cc--eEEEE
Q psy17342        174 SVIGTQNAHNLI-SISNDGR--LCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE-DG--NVYSA  247 (401)
Q Consensus       174 ~~~~~~~~~~l~-s~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~--~i~~~  247 (401)
                      +|  +|+|+.|+ +.+.++.  |.+||+.... .   ..+.     .+........|+ |+++.++..+. +|  .|+++
T Consensus       252 ~~--SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~---~~Lt-----~~~~~~~~~~~s-pDG~~i~f~s~~~g~~~Iy~~  319 (435)
T PRK05137        252 RF--SPDGRKVVMSLSQGGNTDIYTMDLRSGT-T---TRLT-----DSPAIDTSPSYS-PDGSQIVFESDRSGSPQLYVM  319 (435)
T ss_pred             EE--CCCCCEEEEEEecCCCceEEEEECCCCc-e---EEcc-----CCCCccCceeEc-CCCCEEEEEECCCCCCeEEEE
Confidence            88  99998775 5566665  6666765421 1   1121     133345678999 78888877664 33  58888


Q ss_pred             eCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC---CeEEEEEeeCCCceEEEeecCCceEEEEECCCC
Q psy17342        248 CRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD---WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPIN  324 (401)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~  324 (401)
                      |+.+..   ...+..+...+....|+|+      ++.|+..+.+   ..|.+||+..+. ...+.. ...+....|+|+|
T Consensus       320 d~~g~~---~~~lt~~~~~~~~~~~Spd------G~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~spDG  388 (435)
T PRK05137        320 NADGSN---PRRISFGGGRYSTPVWSPR------GDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTWAPNG  388 (435)
T ss_pred             ECCCCC---eEEeecCCCcccCeEECCC------CCEEEEEEcCCCceEEEEEECCCCc-eEeccC-CCCCCCCeECCCC
Confidence            876543   2333334455667889998      6777766543   368888875443 333432 3356788999999


Q ss_pred             CcEEEEEecC-----CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC
Q psy17342        325 PALFATVEVA-----GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN  369 (401)
Q Consensus       325 ~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  369 (401)
                      +.++++....     ..|.++|+..+.. ..+    .....+...+|+|-
T Consensus       389 ~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l----~~~~~~~~p~Wsp~  433 (435)
T PRK05137        389 RVIMFFRQTPGSGGAPKLYTVDLTGRNE-REV----PTPGDASDPAWSPL  433 (435)
T ss_pred             CEEEEEEccCCCCCcceEEEEECCCCce-EEc----cCCCCccCcccCCC
Confidence            8555544433     3678888865443 222    12334566777763

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.50  E-value=4.9e-12  Score=110.21  Aligned_cols=287  Identities=10%  Similarity=0.015  Sum_probs=165.2

Q ss_pred             hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH   86 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   86 (401)
                      +.++.+.+.||.+.++|+...+.+.++                             .-......+++++||++++++.+ 
T Consensus        48 gr~~yv~~rdg~vsviD~~~~~~v~~i-----------------------------~~G~~~~~i~~s~DG~~~~v~n~-   97 (369)
T PF02239_consen   48 GRYLYVANRDGTVSVIDLATGKVVATI-----------------------------KVGGNPRGIAVSPDGKYVYVANY-   97 (369)
T ss_dssp             SSEEEEEETTSEEEEEETTSSSEEEEE-----------------------------E-SSEEEEEEE--TTTEEEEEEE-
T ss_pred             CCEEEEEcCCCeEEEEECCcccEEEEE-----------------------------ecCCCcceEEEcCCCCEEEEEec-
Confidence            445555666777777777666632222                             11244788999999999999987 


Q ss_pred             cCCCCCCCCCcEEEEEeCcCCCCCceEEEe------cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecc
Q psy17342         87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFF------CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP  160 (401)
Q Consensus        87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~  160 (401)
                              ..+.+.++|.++.+.+......      ....+.++..+|..+.++++--..+.|.+.|.........    
T Consensus        98 --------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~----  165 (369)
T PF02239_consen   98 --------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV----  165 (369)
T ss_dssp             --------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE----
T ss_pred             --------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce----
Confidence                    6899999999987766655433      1346788888887755666665568888888776543211    


Q ss_pred             ccccCCCCcEEEEEEeecCCceEEEEE-eCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccC---------
Q psy17342        161 LSVMAHTHPVFCMSVIGTQNAHNLISI-SNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQN---------  230 (401)
Q Consensus       161 ~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------  230 (401)
                       .............|  .+++++++.+ ..+..|-++|..+... .......   ...|..++..+ .+|.         
T Consensus       166 -~~i~~g~~~~D~~~--dpdgry~~va~~~sn~i~viD~~~~k~-v~~i~~g---~~p~~~~~~~~-php~~g~vw~~~~  237 (369)
T PF02239_consen  166 -TTIKVGRFPHDGGF--DPDGRYFLVAANGSNKIAVIDTKTGKL-VALIDTG---KKPHPGPGANF-PHPGFGPVWATSG  237 (369)
T ss_dssp             -EEEE--TTEEEEEE---TTSSEEEEEEGGGTEEEEEETTTTEE-EEEEE-S---SSBEETTEEEE-EETTTEEEEEEEB
T ss_pred             -eeeccccccccccc--CcccceeeecccccceeEEEeeccceE-EEEeecc---ccccccccccc-cCCCcceEEeecc
Confidence             11223445667888  8999887664 5566888999775211 1111110   12233333332 1211         


Q ss_pred             CCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEE----eCCCeEEEEEeeCCCceE
Q psy17342        231 DVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS----SYDWSVKLWNIKENKPVH  306 (401)
Q Consensus       231 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~----~~d~~i~iwd~~~~~~~~  306 (401)
                      .+...++.-....+.+|+..  ..+.+..+.....+ .-+..+|+      ++++...    ...++|.++|.++.+.+.
T Consensus       238 ~~~~~~~~ig~~~v~v~d~~--~wkvv~~I~~~G~g-lFi~thP~------s~~vwvd~~~~~~~~~v~viD~~tl~~~~  308 (369)
T PF02239_consen  238 LGYFAIPLIGTDPVSVHDDY--AWKVVKTIPTQGGG-LFIKTHPD------SRYVWVDTFLNPDADTVQVIDKKTLKVVK  308 (369)
T ss_dssp             SSSSEEEEEE--TTT-STTT--BTSEEEEEE-SSSS---EE--TT-------SEEEEE-TT-SSHT-EEEEECCGTEEEE
T ss_pred             ccceecccccCCccccchhh--cCeEEEEEECCCCc-ceeecCCC------CccEEeeccCCCCCceEEEEECcCcceeE
Confidence            12222122222233445554  34467777766666 77888999      6777776    445899999999987777


Q ss_pred             EEeecC-CceEEEEECCCCCcEEEEEecCC-EEEEEeCCCCCCCcceE
Q psy17342        307 SFNEFR-DYVMDVQWSPINPALFATVEVAG-RVDLWNLNLDTEVPATS  352 (401)
Q Consensus       307 ~~~~~~-~~v~~v~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~  352 (401)
                      ++.... ..+..+.|+++|+.+.++.-..+ .|.+||..+.+...++.
T Consensus       309 ~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  309 TITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             -HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             EEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            775422 35889999999997777766655 89999999987665543

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.49  E-value=4.5e-10  Score=98.16  Aligned_cols=259  Identities=9%  Similarity=0.060  Sum_probs=159.1

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCC--CCCceEEEe-cCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK--KTTPEFEFF-CQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~--~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      .....++++|++++|.++....      ..++.|..|++...  .....-... .......++++|++..++++-..+|.
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~------~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~  110 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGS------GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGS  110 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTS------STTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCCceEEEEeCCCEEEEEEccc------cCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCe
Confidence            4567789999999999888210      14689999998754  222222222 34566789999988555555556899


Q ss_pred             EEEEECCCCCCCceeecccc--------ccCCCCcEEEEEEeecCCceEEEEEeC-CCcEEEeeccCCCCCc-ccccccc
Q psy17342        143 IVLWDTRVQKKTPVHRTPLS--------VMAHTHPVFCMSVIGTQNAHNLISISN-DGRLCSWSLEMLSSPQ-ETRDLQY  212 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~-~~~~~~~  212 (401)
                      |.++++..............        .........++.+  +|+++++++... ...|.+|++....... ....+  
T Consensus       111 v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~--~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~--  186 (345)
T PF10282_consen  111 VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF--SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI--  186 (345)
T ss_dssp             EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE---TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE--
T ss_pred             EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEE--CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc--
Confidence            99999987432211110010        1123455678888  999998877644 4479999987533111 11111  


Q ss_pred             ccccCCccceEEEEeccCCCCeEEE-EcCCceEEEEeCCCCCCC--ceeeecC----C--CCceeeeecCccCCCCCCCc
Q psy17342        213 NNKQTKNLAVLSLAFPQNDVNNFVV-GCEDGNVYSACRHGNKAG--NVECYEG----H--EGPVVGLSSHRAQGHIDFSH  283 (401)
Q Consensus       213 ~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d~~i~~~~~~~~~~~--~~~~~~~----~--~~~v~~i~~~~~~~~~~~~~  283 (401)
                        ........+.++|+ ++++++++ .-.++.|.+++.......  .+.....    .  ......|.++|+      ++
T Consensus       187 --~~~~G~GPRh~~f~-pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd------g~  257 (345)
T PF10282_consen  187 --KVPPGSGPRHLAFS-PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD------GR  257 (345)
T ss_dssp             --ECSTTSSEEEEEE--TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT------SS
T ss_pred             --ccccCCCCcEEEEc-CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC------CC
Confidence              12345678999999 68777655 456778999888732221  1121111    1  124678899998      56


Q ss_pred             EEEEEe-CCCeEEEEEeeC--CC--ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCC
Q psy17342        284 LYLTSS-YDWSVKLWNIKE--NK--PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       284 ~l~s~~-~d~~i~iwd~~~--~~--~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~  343 (401)
                      +|.++. ....|.+|++..  ++  .+..+.........++++|+|++++++...++.|.+|++.
T Consensus       258 ~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  258 FLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            655554 578899999943  33  2333443344578999999999766666678899999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0309|consensus

Probab=99.49  E-value=4.6e-13  Score=118.58  Aligned_cols=295  Identities=12%  Similarity=0.171  Sum_probs=203.0

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEec-CCCeeEEEEeCCCC--ceEEEEecCC
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFNP--YLILGGTYSG  141 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~--~~l~~g~~dg  141 (401)
                      .+++.++..+|.|+.++.++           .-.+.+-|+...-..++...+. .-.|-.+.|+|...  ..+++. ...
T Consensus        24 ~~~~~a~si~p~grdi~lAs-----------r~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVst-s~q   91 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLAS-----------RQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVST-SNQ   91 (1081)
T ss_pred             cCcccceeeccccchhhhhh-----------hcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEec-Ccc
Confidence            47799999999999999999           3456777887655555554432 34678889988543  345544 456


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccc
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA  221 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  221 (401)
                      .-.+|++.......+   .+.+.+|...|+.+.|. ......+++++.|..+..||++....+......       ....
T Consensus        92 kaiiwnlA~ss~~aI---ef~lhghsraitd~n~~-~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~-------w~s~  160 (1081)
T KOG0309|consen   92 KAIIWNLAKSSSNAI---EFVLHGHSRAITDINFN-PQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS-------WRSA  160 (1081)
T ss_pred             hhhhhhhhcCCccce---EEEEecCccceeccccC-CCCCcceeeccccccceeeeccCCCcceeeeec-------cccc
Confidence            678999876544322   13457999999999994 345568999999999999999976555544332       3345


Q ss_pred             eEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342        222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE  301 (401)
Q Consensus       222 v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  301 (401)
                      -..++|+-.++. +++.+....|++||.+... .++..+++|...|++++|....     ...+.+++.|++|+.||..+
T Consensus       161 asqVkwnyk~p~-vlasshg~~i~vwd~r~gs-~pl~s~K~~vs~vn~~~fnr~~-----~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  161 ASQVKWNYKDPN-VLASSHGNDIFVWDLRKGS-TPLCSLKGHVSSVNSIDFNRFK-----YSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             CceeeecccCcc-hhhhccCCceEEEeccCCC-cceEEecccceeeehHHHhhhh-----hhhhcccCCCCceeeecccc
Confidence            678889844444 4455667789999998544 3677888999999999998764     56789999999999999976


Q ss_pred             CCc--eEEEeecCCceEEEEECCCCCcEEEEEe-cCCEEEEEeCCCCCC-------CcceEEeecCCCCeEEEEecCCC-
Q psy17342        302 NKP--VHSFNEFRDYVMDVQWSPINPALFATVE-VAGRVDLWNLNLDTE-------VPATSAIVEGAPALSRVTWTPNG-  370 (401)
Q Consensus       302 ~~~--~~~~~~~~~~v~~v~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~v~~~~~s~~g-  370 (401)
                      ...  .++.. ...+|+.-.+-|-|..+++.-. .+..+.+++.++...       ...+....+|...|..+.|-..+ 
T Consensus       234 St~e~~~~vt-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e  312 (1081)
T KOG0309|consen  234 STTESKRTVT-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKE  312 (1081)
T ss_pred             cccccceecc-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccc
Confidence            432  22333 3567888888887654333222 233555555443221       12233345777777666664322 


Q ss_pred             ---------cEEEEEecCCcEEEEEeccC
Q psy17342        371 ---------TQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       371 ---------~~l~~~~~dg~v~iw~~~~~  390 (401)
                               -.|++-+.|..+++|-+.+.
T Consensus       313 ~~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  313 CDGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             ccCCCCccceeEEEeecCCceEeeeccHH
Confidence                     36999999999999999764

>KOG4547|consensus

Probab=99.48  E-value=2e-11  Score=105.82  Aligned_cols=197  Identities=12%  Similarity=0.118  Sum_probs=150.4

Q ss_pred             CCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEe------------------ecCCceEEEEEeC
Q psy17342        128 KFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVI------------------GTQNAHNLISISN  189 (401)
Q Consensus       128 ~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------------------~~~~~~~l~s~~~  189 (401)
                      |.+..++|..+.||.+++|+...++....+..   ...-.+...+..|.                  .+.+...++-|..
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p---~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~   78 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAP---IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP   78 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeecc---chhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence            33446888889999999999988765432221   12233444555552                  1234457888888


Q ss_pred             CCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceee
Q psy17342        190 DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVG  269 (401)
Q Consensus       190 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~  269 (401)
                      .|.|.+|++..++ ....  +.   ...|...|.++.++ .+-.+|.+++.|+.+..|+...  ...+..+++....+.+
T Consensus        79 ~g~v~~ys~~~g~-it~~--~s---t~~h~~~v~~~~~~-~~~~ciyS~~ad~~v~~~~~~~--~~~~~~~~~~~~~~~s  149 (541)
T KOG4547|consen   79 QGSVLLYSVAGGE-ITAK--LS---TDKHYGNVNEILDA-QRLGCIYSVGADLKVVYILEKE--KVIIRIWKEQKPLVSS  149 (541)
T ss_pred             CccEEEEEecCCe-EEEE--Ee---cCCCCCcceeeecc-cccCceEecCCceeEEEEeccc--ceeeeeeccCCCccce
Confidence            9999999987522 2222  21   23488999999999 8889999999999999999874  3467778888889999


Q ss_pred             eecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCC-----CCcEEEEEecCCEEEEEeCCC
Q psy17342        270 LSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPI-----NPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       270 i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~-----~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      ++++|+      +..+++++  +.|++||+++++.+.+|.+|.++|.++.|--.     |.++|.+...+.-+.+|-+..
T Consensus       150 l~is~D------~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  150 LCISPD------GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEcCC------CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            999999      78998887  68999999999999999999999999999877     666777777777788887665

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.46  E-value=3.9e-10  Score=96.12  Aligned_cols=273  Identities=8%  Similarity=0.045  Sum_probs=154.9

Q ss_pred             cEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEe---------cCCeEEEEECCCCCCCceeecccc-ccCC
Q psy17342         97 GVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGT---------YSGQIVLWDTRVQKKTPVHRTPLS-VMAH  166 (401)
Q Consensus        97 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~---------~dg~v~iw~~~~~~~~~~~~~~~~-~~~~  166 (401)
                      ++|.+.|.++.+.+..+..+....  .+ ++|+++.+.++.+         .+..|.+||..+.+.......+-. ....
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence            899999999877776665553222  24 9999876666666         688999999999876533221100 0001


Q ss_pred             CCcEEEEEEeecCCceEEEEEe-C-CCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceE
Q psy17342        167 THPVFCMSVIGTQNAHNLISIS-N-DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNV  244 (401)
Q Consensus       167 ~~~v~~~~~~~~~~~~~l~s~~-~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  244 (401)
                      ...-..+++  +++|++++... . +..|.+.|+.... ....+...        ....-...   ....+.+-+.||..
T Consensus       104 ~~~~~~~~l--s~dgk~l~V~n~~p~~~V~VvD~~~~k-vv~ei~vp--------~~~~vy~t---~e~~~~~~~~Dg~~  169 (352)
T TIGR02658       104 GTYPWMTSL--TPDNKTLLFYQFSPSPAVGVVDLEGKA-FVRMMDVP--------DCYHIFPT---ANDTFFMHCRDGSL  169 (352)
T ss_pred             cCccceEEE--CCCCCEEEEecCCCCCEEEEEECCCCc-EEEEEeCC--------CCcEEEEe---cCCccEEEeecCce
Confidence            222235556  89999888776 3 6889999997522 11111111        01111111   11111222344444


Q ss_pred             EEEeCCCCCCCceee---ecCCCCceeee-ecCccCCCCCCCcEEEEEeCCCeEEEEEeeC-----CCceEEEee-----
Q psy17342        245 YSACRHGNKAGNVEC---YEGHEGPVVGL-SSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE-----NKPVHSFNE-----  310 (401)
Q Consensus       245 ~~~~~~~~~~~~~~~---~~~~~~~v~~i-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~-----  310 (401)
                      ....+..........   +.+...++..= .+.+..     +.++..... |+|.+-|+..     .+....+..     
T Consensus       170 ~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~d-----g~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~  243 (352)
T TIGR02658       170 AKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKS-----GRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKAD  243 (352)
T ss_pred             EEEEecCCCceEEeeeeeecCCccccccCCceEcCC-----CcEEEEecC-CeEEEEecCCCcceecceeeecccccccc
Confidence            433222111001111   11111111000 233321     556655554 9999999643     233332221     


Q ss_pred             --cCCceEEEEECCCCCcEEEEEe---------cCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc-EEEEEe-
Q psy17342        311 --FRDYVMDVQWSPINPALFATVE---------VAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT-QLCVGD-  377 (401)
Q Consensus       311 --~~~~v~~v~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-  377 (401)
                        ..+.+.-++++|+++.+++...         ..+.|.++|..+.+.+..+.    -...+..++++|||+ +|++.. 
T Consensus       244 ~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~----vG~~~~~iavS~Dgkp~lyvtn~  319 (352)
T TIGR02658       244 GWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE----LGHEIDSINVSQDAKPLLYALST  319 (352)
T ss_pred             ccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe----CCCceeeEEECCCCCeEEEEeCC
Confidence              2334455999999986665331         22589999999887665543    245788999999999 887666 


Q ss_pred             cCCcEEEEEeccCccceeeee
Q psy17342        378 EKGAITMFDVGEVGIACLKFI  398 (401)
Q Consensus       378 ~dg~v~iw~~~~~~~~~l~~~  398 (401)
                      .++.|.++|+.++  +.++.+
T Consensus       320 ~s~~VsViD~~t~--k~i~~i  338 (352)
T TIGR02658       320 GDKTLYIFDAETG--KELSSV  338 (352)
T ss_pred             CCCcEEEEECcCC--eEEeee
Confidence            5788999999988  455554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4547|consensus

Probab=99.46  E-value=5.2e-12  Score=109.32  Aligned_cols=195  Identities=16%  Similarity=0.167  Sum_probs=145.6

Q ss_pred             cCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEec------c-------------CCCCeEEEE
Q psy17342        178 TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFP------Q-------------NDVNNFVVG  238 (401)
Q Consensus       178 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~-------------~~~~~l~~~  238 (401)
                      ++...++|....||.+++|+.......+......     .-.+..++..|.      |             .+...++.|
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~-----~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlg   76 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA-----SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLG   76 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccch-----hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEee
Confidence            4567789999999999999987633222211111     122233333332      1             244578899


Q ss_pred             cCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEE
Q psy17342        239 CEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDV  318 (401)
Q Consensus       239 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v  318 (401)
                      ...|.|.+|+...........-..|.+.|+++.++..      ...|.+++.|+.+..|+...++.++.+......+.++
T Consensus        77 t~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~------~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl  150 (541)
T KOG4547|consen   77 TPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQR------LGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL  150 (541)
T ss_pred             cCCccEEEEEecCCeEEEEEecCCCCCcceeeecccc------cCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence            9999999999885543222222479999999999887      5889999999999999999999999999888889999


Q ss_pred             EECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC-----CcEEEE-EecCCcEEEEEecc
Q psy17342        319 QWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN-----GTQLCV-GDEKGAITMFDVGE  389 (401)
Q Consensus       319 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~~-~~~dg~v~iw~~~~  389 (401)
                      +.+||+. ++++++  ++|++||+++.+.+..+   .+|..+|++++|..+     |.++.+ ...+..+.+|-+..
T Consensus       151 ~is~D~~-~l~~as--~~ik~~~~~~kevv~~f---tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  151 CISPDGK-ILLTAS--RQIKVLDIETKEVVITF---TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEcCCCC-EEEecc--ceEEEEEccCceEEEEe---cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            9999997 777775  48999999998766555   488899999999877     665554 45556688998876

>KOG1064|consensus

Probab=99.43  E-value=1e-12  Score=126.92  Aligned_cols=201  Identities=16%  Similarity=0.199  Sum_probs=153.5

Q ss_pred             EEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcE
Q psy17342        114 EFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRL  193 (401)
Q Consensus       114 ~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i  193 (401)
                      ..++-..|.++.=+|.. -+.++|+.||.|++|....++.....+.    .+. ..|+.+.|  +..|+.+..+..||.+
T Consensus      2204 ~k~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~rt----~g~-s~vtr~~f--~~qGnk~~i~d~dg~l 2275 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFRT----AGN-SRVTRSRF--NHQGNKFGIVDGDGDL 2275 (2439)
T ss_pred             eecccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEeec----cCc-chhhhhhh--cccCCceeeeccCCce
Confidence            34455678888888866 4666888999999999988876654442    333 88899988  8899999999999999


Q ss_pred             EEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEE---cCCceEEEEeCCCCCCCceeeecCCCCceeee
Q psy17342        194 CSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVG---CEDGNVYSACRHGNKAGNVECYEGHEGPVVGL  270 (401)
Q Consensus       194 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i  270 (401)
                      .+|...    +...+.     .+.|......+.|- .  ..++++   +.++.+.+||..-...... .-..|.+.++++
T Consensus      2276 ~l~q~~----pk~~~s-----~qchnk~~~Df~Fi-~--s~~~tag~s~d~~n~~lwDtl~~~~~s~-v~~~H~~gaT~l 2342 (2439)
T KOG1064|consen 2276 SLWQAS----PKPYTS-----WQCHNKALSDFRFI-G--SLLATAGRSSDNRNVCLWDTLLPPMNSL-VHTCHDGGATVL 2342 (2439)
T ss_pred             eecccC----Ccceec-----cccCCccccceeee-e--hhhhccccCCCCCcccchhcccCcccce-eeeecCCCceEE
Confidence            999986    222222     23377777888887 3  555554   4577899999754332222 227899999999


Q ss_pred             ecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcc
Q psy17342        271 SSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA  350 (401)
Q Consensus       271 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  350 (401)
                      ++.|.      .++|++|+.+|.|++||++..+.+++++.         +. .. .+|++++..|.++||++.....+..
T Consensus      2343 ~~~P~------~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~-~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2343 AYAPK------HQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TR-EYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred             EEcCc------ceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hh-heeeccCcccceEEEEccccchhhc
Confidence            99999      69999999999999999998888887765         44 33 4799999999999999998766655


Q ss_pred             eE
Q psy17342        351 TS  352 (401)
Q Consensus       351 ~~  352 (401)
                      +.
T Consensus      2406 ~p 2407 (2439)
T KOG1064|consen 2406 FP 2407 (2439)
T ss_pred             Cc
Confidence            44

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.42  E-value=6.4e-12  Score=100.43  Aligned_cols=257  Identities=14%  Similarity=0.224  Sum_probs=172.3

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCC-CCce----EEE-----------ecCCCeeEEEEeC
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK-TTPE----FEF-----------FCQSPVLSCCFAK  128 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~~----~~~-----------~~~~~v~~~~~~~  128 (401)
                      .+.|+++.|...|.+|++|.          ..|.|.+|.-+... +...    +..           .-...|..+.|..
T Consensus        26 ad~ItaVefd~tg~YlatGD----------kgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~   95 (460)
T COG5170          26 ADKITAVEFDETGLYLATGD----------KGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFD   95 (460)
T ss_pred             cceeeEEEeccccceEeecC----------CCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeec
Confidence            36799999999999999888          78999999876422 1111    110           0125688899986


Q ss_pred             CCC-ceEEEEecCCeEEEEECCCCCCCce-----------------------------------eecc--ccccCCCCcE
Q psy17342        129 FNP-YLILGGTYSGQIVLWDTRVQKKTPV-----------------------------------HRTP--LSVMAHTHPV  170 (401)
Q Consensus       129 ~~~-~~l~~g~~dg~v~iw~~~~~~~~~~-----------------------------------~~~~--~~~~~~~~~v  170 (401)
                      ++. ..+...+.|.+|++|.+.......+                                   ...+  +....|.-.|
T Consensus        96 ~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhi  175 (460)
T COG5170          96 DTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHI  175 (460)
T ss_pred             CCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEe
Confidence            543 3444445899999999875421000                                   0001  1124677778


Q ss_pred             EEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCC
Q psy17342        171 FCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRH  250 (401)
Q Consensus       171 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~  250 (401)
                      .++++  +.+...++++ .|-.|.+|+++..........+.+.+...-..-|++..|+|...+.+.-.+..|.|.+.|++
T Consensus       176 NSiS~--NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR  252 (460)
T COG5170         176 NSISF--NSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR  252 (460)
T ss_pred             eeeee--cCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence            88888  7777777764 67789999998755555555554433333455788999998888889999999999999998


Q ss_pred             CCCC-----Cc---------eeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC-CCceEEEeecC---
Q psy17342        251 GNKA-----GN---------VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE-NKPVHSFNEFR---  312 (401)
Q Consensus       251 ~~~~-----~~---------~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~---  312 (401)
                      ....     +.         ..-+.+-...|..+.|+++      ++++++-+ --+|+|||.+. ..|+.++.-|.   
T Consensus       253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~n------gryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~  325 (460)
T COG5170         253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDN------GRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLM  325 (460)
T ss_pred             hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCC------CcEEEEec-cceEEEEecccccCCceeechHHHHH
Confidence            3221     10         0011222356888999998      78888766 57899999976 56788876542   


Q ss_pred             ---------Cce---EEEEECCCCCcEEEEEecCCEEEEEeC
Q psy17342        313 ---------DYV---MDVQWSPINPALFATVEVAGRVDLWNL  342 (401)
Q Consensus       313 ---------~~v---~~v~~~~~~~~~l~~~~~d~~i~iwd~  342 (401)
                               ..|   ..+.|+.+.+ .+.+|+..+..-||-.
T Consensus       326 ~~l~d~YEnDaifdkFeisfSgd~~-~v~sgsy~NNfgiyp~  366 (460)
T COG5170         326 DELNDVYENDAIFDKFEISFSGDDK-HVLSGSYSNNFGIYPT  366 (460)
T ss_pred             HHHHhhhhccceeeeEEEEecCCcc-cccccccccceeeecc
Confidence                     223   3578888876 5778888777777753

>KOG4532|consensus

Probab=99.41  E-value=7.9e-11  Score=92.33  Aligned_cols=274  Identities=12%  Similarity=-0.004  Sum_probs=175.9

Q ss_pred             CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCC----CCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEE
Q psy17342         96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF----NPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVF  171 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  171 (401)
                      ...+-+|+.-+... ....+.     ..+.|-|.    ...+|+.|+..|...+|...+.+....+     ...|...|.
T Consensus        51 t~sv~i~~~y~N~~-~iv~~y-----~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~-----cd~snn~v~  119 (344)
T KOG4532|consen   51 TISVPINSHYSNPK-GIVEFY-----TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQ-----CDVSNNDVT  119 (344)
T ss_pred             eeeeEeccccCCch-hhEEee-----ecccccchHhhccccEEEeccccceeeeecccCcccceee-----ecccccchh
Confidence            45667777654331 111111     23444441    1247889989999999999876643211     123333332


Q ss_pred             EEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCC
Q psy17342        172 CMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHG  251 (401)
Q Consensus       172 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~  251 (401)
                      -+.=. ......+..++.|.++++.+++........   ..     ....+.+++++ ++++++++.+....|..|.+..
T Consensus       120 ~~~r~-cd~~~~~~i~sndht~k~~~~~~~s~~~~~---h~-----~~~~~ns~~~s-nd~~~~~~Vgds~~Vf~y~id~  189 (344)
T KOG4532|consen  120 LVKRY-CDLKFPLNIASNDHTGKTMVVSGDSNKFAV---HN-----QNLTQNSLHYS-NDPSWGSSVGDSRRVFRYAIDD  189 (344)
T ss_pred             hhhhh-cccccceeeccCCcceeEEEEecCccccee---ec-----cccceeeeEEc-CCCceEEEecCCCcceEEEeCC
Confidence            21100 112234667788999999988742221111   10     11237889999 8999999999999999998876


Q ss_pred             CCCCceee-ecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC-CceEE----EeecCCceEEEEECCCCC
Q psy17342        252 NKAGNVEC-YEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN-KPVHS----FNEFRDYVMDVQWSPINP  325 (401)
Q Consensus       252 ~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~----~~~~~~~v~~v~~~~~~~  325 (401)
                      .....+.. .......-.+.+|+..      ...+|++..||++.|||++.. .+..+    -..|.+.+..+.|+|.|.
T Consensus       190 ~sey~~~~~~a~t~D~gF~~S~s~~------~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  190 ESEYIENIYEAPTSDHGFYNSFSEN------DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             ccceeeeeEecccCCCceeeeeccC------cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence            55544442 2334445567888887      689999999999999999874 33332    234899999999998764


Q ss_pred             c-EEEEEecCCEEEEEeCCCCCCCcceEEeec----C-CCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeee
Q psy17342        326 A-LFATVEVAGRVDLWNLNLDTEVPATSAIVE----G-APALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKF  397 (401)
Q Consensus       326 ~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~-~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~  397 (401)
                      . +|...-.-+.+.+-|+++....+.+..+..    | ...|....|+.++..+.+.+++. +.-|++.+....++..
T Consensus       264 lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~srsR~~fps  340 (344)
T KOG4532|consen  264 LDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNILSRSRFSFPS  340 (344)
T ss_pred             ceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh-hheeeccccceeccCC
Confidence            1 344444467899999999887665543211    2 24488888998888888777764 7788887765444443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.39  E-value=3.9e-10  Score=102.05  Aligned_cols=214  Identities=14%  Similarity=0.166  Sum_probs=134.8

Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC---CcEEEeeccCCCCCccccccccccccC
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND---GRLCSWSLEMLSSPQETRDLQYNNKQT  217 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~  217 (401)
                      ..|.++|.......       .+..+...+...+|  +|++++|+.++.+   ..|.+||+.+.. ...   +.     .
T Consensus       170 ~~l~~~d~~g~~~~-------~l~~~~~~~~~p~~--Spdg~~la~~~~~~~~~~i~v~d~~~g~-~~~---~~-----~  231 (417)
T TIGR02800       170 YELQVADYDGANPQ-------TITRSREPILSPAW--SPDGQKLAYVSFESGKPEIYVQDLATGQ-REK---VA-----S  231 (417)
T ss_pred             ceEEEEcCCCCCCE-------EeecCCCceecccC--CCCCCEEEEEEcCCCCcEEEEEECCCCC-EEE---ee-----c
Confidence            35778887644322       12345667888888  9999999887654   379999987521 111   11     1


Q ss_pred             CccceEEEEeccCCCCeEEE-EcCCc--eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC-CC-
Q psy17342        218 KNLAVLSLAFPQNDVNNFVV-GCEDG--NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DW-  292 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~~-~~~d~--~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~-  292 (401)
                      ....+.+++|+ ++++.|+. .+.++  .|++|++.+..   ...+..+........|+|+      ++.|+..+. ++ 
T Consensus       232 ~~~~~~~~~~s-pDg~~l~~~~~~~~~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~s~d------g~~l~~~s~~~g~  301 (417)
T TIGR02800       232 FPGMNGAPAFS-PDGSKLAVSLSKDGNPDIYVMDLDGKQ---LTRLTNGPGIDTEPSWSPD------GKSIAFTSDRGGS  301 (417)
T ss_pred             CCCCccceEEC-CCCCEEEEEECCCCCccEEEEECCCCC---EEECCCCCCCCCCEEECCC------CCEEEEEECCCCC
Confidence            23345678899 78877654 44444  58888886543   3344445455557788887      677665554 33 


Q ss_pred             -eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCC---EEEEEeCCCCCCCcceEEeecCCCCeEEEEecC
Q psy17342        293 -SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAG---RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTP  368 (401)
Q Consensus       293 -~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~  368 (401)
                       .|.++|+.+++. ..+..+...+....|+|+++ +++.++.++   .|.+||+.++.. ..+    .........+|+|
T Consensus       302 ~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~~~~-~~l----~~~~~~~~p~~sp  374 (417)
T TIGR02800       302 PQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGD-LIAFVHREGGGFNIAVMDLDGGGE-RVL----TDTGLDESPSFAP  374 (417)
T ss_pred             ceEEEEECCCCCE-EEeecCCCCccCeEECCCCC-EEEEEEccCCceEEEEEeCCCCCe-EEc----cCCCCCCCceECC
Confidence             577778766553 44554556677899999998 555555554   788999887432 111    1122234568999


Q ss_pred             CCcEEEEEecCC---cEEEEEecc
Q psy17342        369 NGTQLCVGDEKG---AITMFDVGE  389 (401)
Q Consensus       369 ~g~~l~~~~~dg---~v~iw~~~~  389 (401)
                      ||++|+..+.++   .+++.+...
T Consensus       375 dg~~l~~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       375 NGRMILYATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             CCCEEEEEEeCCCcEEEEEEECCC
Confidence            999888877654   355555443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1064|consensus

Probab=99.39  E-value=2.5e-12  Score=124.23  Aligned_cols=197  Identities=17%  Similarity=0.226  Sum_probs=153.4

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      ..|.++.=+|...+.++|+          .||.|++|.+..+..+..+....++.|+.+.|+.+| +.+..+..||.+.+
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs----------~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG-nk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGS----------QDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG-NKFGIVDGDGDLSL 2277 (2439)
T ss_pred             CceeeecCCCCCceEEecC----------CCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC-CceeeeccCCceee
Confidence            5688888999999999999          899999999988777766665556899999999988 56666778999999


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEe---CCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS---NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      |......       .+..+.|+....+..|.    +..+++++   .++.+.+||...........       ..|...+
T Consensus      2278 ~q~~pk~-------~~s~qchnk~~~Df~Fi----~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-------~~H~~ga 2339 (2439)
T KOG1064|consen 2278 WQASPKP-------YTSWQCHNKALSDFRFI----GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH-------TCHDGGA 2339 (2439)
T ss_pred             cccCCcc-------eeccccCCccccceeee----ehhhhccccCCCCCcccchhcccCcccceee-------eecCCCc
Confidence            9987322       14457899999999983    25666654   46789999976422221111       3388999


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN  302 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  302 (401)
                      +++++. |..+.|++|+.+|.|++||++..+  .++.++.         ++ .      ..+|++|+..|.++||++...
T Consensus      2340 T~l~~~-P~~qllisggr~G~v~l~D~rqrq--l~h~~~~---------~~-~------~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2340 TVLAYA-PKHQLLISGGRKGEVCLFDIRQRQ--LRHTFQA---------LD-T------REYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             eEEEEc-CcceEEEecCCcCcEEEeehHHHH--HHHHhhh---------hh-h------hheeeccCcccceEEEEcccc
Confidence            999999 899999999999999999998433  4444443         33 2      589999999999999999887


Q ss_pred             CceEEEee
Q psy17342        303 KPVHSFNE  310 (401)
Q Consensus       303 ~~~~~~~~  310 (401)
                      ..++++..
T Consensus      2401 ~ll~~~p~ 2408 (2439)
T KOG1064|consen 2401 GLLHTFPS 2408 (2439)
T ss_pred             chhhcCch
Confidence            77776654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.38  E-value=2.5e-09  Score=103.60  Aligned_cols=294  Identities=16%  Similarity=0.202  Sum_probs=188.1

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEE----eCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEec
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIW----NTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTY  139 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iw----d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~  139 (401)
                      ..+.|.++.|-++...++.+.          .+|.|.+.    +..  ....+....-...|.+++||||. .+|+..+.
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~----------~~Gdi~~~~~~~~~~--~~~~E~VG~vd~GI~a~~WSPD~-Ella~vT~  140 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIAL----------ASGDIILVREDPDPD--EDEIEIVGSVDSGILAASWSPDE-ELLALVTG  140 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEE----------CCceEEEEEccCCCC--CceeEEEEEEcCcEEEEEECCCc-CEEEEEeC
Confidence            447899999999998888888          79999999    444  33334444557899999999987 67776677


Q ss_pred             CCeEEEEECCC-------------CCCCce----------------------eecc-------ccccCCCCcEEEEEEee
Q psy17342        140 SGQIVLWDTRV-------------QKKTPV----------------------HRTP-------LSVMAHTHPVFCMSVIG  177 (401)
Q Consensus       140 dg~v~iw~~~~-------------~~~~~~----------------------~~~~-------~~~~~~~~~v~~~~~~~  177 (401)
                      ++++.+-.-.-             +...++                      .+.+       -.+. +...-..++|  
T Consensus       141 ~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISW--  217 (928)
T PF04762_consen  141 EGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISW--  217 (928)
T ss_pred             CCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEE--
Confidence            88877654220             000000                      0000       0011 3334557888  


Q ss_pred             cCCceEEEEEeC---C---CcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC---CceEEEEe
Q psy17342        178 TQNAHNLISISN---D---GRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE---DGNVYSAC  248 (401)
Q Consensus       178 ~~~~~~l~s~~~---d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~~~~  248 (401)
                      ..||.+|++.+.   .   ..+++|+-+  +......+       ...+--.+++|. |.|++||+...   ...|.+|.
T Consensus       218 RGDG~yFAVss~~~~~~~~R~iRVy~Re--G~L~stSE-------~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfE  287 (928)
T PF04762_consen  218 RGDGEYFAVSSVEPETGSRRVIRVYSRE--GELQSTSE-------PVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFFE  287 (928)
T ss_pred             CCCCcEEEEEEEEcCCCceeEEEEECCC--ceEEeccc-------cCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEEe
Confidence            889999998774   3   468999865  22222211       112223478999 89999888754   45577787


Q ss_pred             CCCCCCCc-eeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC--ceEEEeec-CCceEEEEECCCC
Q psy17342        249 RHGNKAGN-VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK--PVHSFNEF-RDYVMDVQWSPIN  324 (401)
Q Consensus       249 ~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~-~~~v~~v~~~~~~  324 (401)
                      .++..... ...+......|..+.|+++      +..||..-.|. |.+|-..+-.  ..+++... ...+..+.|+|..
T Consensus       288 rNGLrhgeF~l~~~~~~~~v~~l~Wn~d------s~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~  360 (928)
T PF04762_consen  288 RNGLRHGEFTLRFDPEEEKVIELAWNSD------SEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK  360 (928)
T ss_pred             cCCcEeeeEecCCCCCCceeeEEEECCC------CCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC
Confidence            76543221 1112245678999999999      78998877554 9999887632  22223221 2334559999987


Q ss_pred             CcEEEEEecCCEEEEEeCC----CCCC----------------------------CcceEEeecCCCCeEEEEecCCCcE
Q psy17342        325 PALFATVEVAGRVDLWNLN----LDTE----------------------------VPATSAIVEGAPALSRVTWTPNGTQ  372 (401)
Q Consensus       325 ~~~l~~~~~d~~i~iwd~~----~~~~----------------------------~~~~~~~~~~~~~v~~~~~s~~g~~  372 (401)
                      +..|.....+|.+..+++.    .+..                            .|.......-..+|.+++|++++..
T Consensus       361 p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~  440 (928)
T PF04762_consen  361 PLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSR  440 (928)
T ss_pred             CCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCe
Confidence            7667777666666655431    1100                            0111112233578999999999988


Q ss_pred             EEEEecCCcEEEEEeccC
Q psy17342        373 LCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       373 l~~~~~dg~v~iw~~~~~  390 (401)
                      +++-..||.|.+|.....
T Consensus       441 ~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  441 FAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             EEEEECCCCEEEEEecCC
Confidence            999999999999996554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.38  E-value=1.5e-08  Score=83.35  Aligned_cols=254  Identities=11%  Similarity=0.122  Sum_probs=161.8

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe---cCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF---CQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      ..++-++|+|+++.|.++...       +.+|.|.-|.++...-.-++...   ...+.+.+++++++..++.+-...|.
T Consensus        40 ~nptyl~~~~~~~~LY~v~~~-------~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~  112 (346)
T COG2706          40 GNPTYLAVNPDQRHLYVVNEP-------GEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGS  112 (346)
T ss_pred             CCCceEEECCCCCEEEEEEec-------CCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCce
Confidence            668889999999999888831       13688888888742111112211   13344889999988444444445689


Q ss_pred             EEEEECCCC-CCCceeeccccccCCCCc----------EEEEEEeecCCceEEEEEeC-CCcEEEeeccCCCCCcccccc
Q psy17342        143 IVLWDTRVQ-KKTPVHRTPLSVMAHTHP----------VFCMSVIGTQNAHNLISISN-DGRLCSWSLEMLSSPQETRDL  210 (401)
Q Consensus       143 v~iw~~~~~-~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~  210 (401)
                      |.++-++.. .....    .....|.+.          +....+  .|+++++++... --+|.+|++.. +........
T Consensus       113 v~v~p~~~dG~l~~~----v~~~~h~g~~p~~rQ~~~h~H~a~~--tP~~~~l~v~DLG~Dri~~y~~~d-g~L~~~~~~  185 (346)
T COG2706         113 VSVYPLQADGSLQPV----VQVVKHTGSGPHERQESPHVHSANF--TPDGRYLVVPDLGTDRIFLYDLDD-GKLTPADPA  185 (346)
T ss_pred             EEEEEcccCCccccc----eeeeecCCCCCCccccCCccceeee--CCCCCEEEEeecCCceEEEEEccc-Ccccccccc
Confidence            999999763 22221    122344444          777888  899999988764 23789999874 222211111


Q ss_pred             ccccccCCccceEEEEeccCCCCeEEEE-cCCceEEEEeCCCCCCCceeeecC---------CCCceeeeecCccCCCCC
Q psy17342        211 QYNNKQTKNLAVLSLAFPQNDVNNFVVG-CEDGNVYSACRHGNKAGNVECYEG---------HEGPVVGLSSHRAQGHID  280 (401)
Q Consensus       211 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~~~~---------~~~~v~~i~~~~~~~~~~  280 (401)
                          ........+.|.|+ |++++..+. -.++.|.+|..+.... .+..++.         .......|.++|+     
T Consensus       186 ----~v~~G~GPRHi~FH-pn~k~aY~v~EL~stV~v~~y~~~~g-~~~~lQ~i~tlP~dF~g~~~~aaIhis~d-----  254 (346)
T COG2706         186 ----EVKPGAGPRHIVFH-PNGKYAYLVNELNSTVDVLEYNPAVG-KFEELQTIDTLPEDFTGTNWAAAIHISPD-----  254 (346)
T ss_pred             ----ccCCCCCcceEEEc-CCCcEEEEEeccCCEEEEEEEcCCCc-eEEEeeeeccCccccCCCCceeEEEECCC-----
Confidence                11255678999999 788886655 4588999998875422 2233322         1234567888888     


Q ss_pred             CCcEEEEEeC-CCeEEEEEeeCCCc-eEE---EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342        281 FSHLYLTSSY-DWSVKLWNIKENKP-VHS---FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD  345 (401)
Q Consensus       281 ~~~~l~s~~~-d~~i~iwd~~~~~~-~~~---~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~  345 (401)
                       +++|.++.. ...|.+|.+....- +..   ...+........++|.++.++|+.-.+..|.+|.+...
T Consensus       255 -GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         255 -GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             -CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence             788887764 34788888765322 222   22234446889999999865555555678999987643

>KOG2041|consensus

Probab=99.38  E-value=2e-10  Score=102.09  Aligned_cols=288  Identities=11%  Similarity=0.164  Sum_probs=189.0

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCC----CC----------ceEEEecCCCeeEEEEeCC
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK----TT----------PEFEFFCQSPVLSCCFAKF  129 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~----~~----------~~~~~~~~~~v~~~~~~~~  129 (401)
                      .+....|++|+....++++|+          .||.+++..+.+..    ..          ....-+|.+.|.-+.|+..
T Consensus        13 nnvkL~c~~WNke~gyIAcgG----------~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~   82 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGG----------ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN   82 (1189)
T ss_pred             CCceEEEEEEcccCCeEEecc----------ccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc
Confidence            346689999999999999999          89999999886521    11          1122357899999999985


Q ss_pred             CCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccc
Q psy17342        130 NPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRD  209 (401)
Q Consensus       130 ~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~  209 (401)
                      . +.|.+...+|.|.+|-+-.+.-...    +......+.|.+++|  +.+|..+...-.||.|.+=.++.  ...-..+
T Consensus        83 ~-QKLTtSDt~GlIiVWmlykgsW~EE----MiNnRnKSvV~SmsW--n~dG~kIcIvYeDGavIVGsvdG--NRIwgKe  153 (1189)
T KOG2041|consen   83 N-QKLTTSDTSGLIIVWMLYKGSWCEE----MINNRNKSVVVSMSW--NLDGTKICIVYEDGAVIVGSVDG--NRIWGKE  153 (1189)
T ss_pred             c-ccccccCCCceEEEEeeecccHHHH----HhhCcCccEEEEEEE--cCCCcEEEEEEccCCEEEEeecc--ceecchh
Confidence            5 6788888999999999877653211    223456778999999  89999999999999998877653  2222222


Q ss_pred             cccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCC-----ceee----ecCCCCceeeeecCccC--C-
Q psy17342        210 LQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAG-----NVEC----YEGHEGPVVGLSSHRAQ--G-  277 (401)
Q Consensus       210 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~-----~~~~----~~~~~~~v~~i~~~~~~--~-  277 (401)
                      +.       ......+.|+ +|...++.+-.+|.+.++|..++-..     +...    +......|..+.|....  . 
T Consensus       154 Lk-------g~~l~hv~ws-~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v  225 (1189)
T KOG2041|consen  154 LK-------GQLLAHVLWS-EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPV  225 (1189)
T ss_pred             cc-------hheccceeec-ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccC
Confidence            22       1234578899 88899999999999999997653211     1001    11111235555554221  1 


Q ss_pred             CCCCCcEEEEEeCCCeEEEEEeeCC-CceEEEeecCCceEEEEECCCCCcEEEEEecC---------CEEEEEeCCCCCC
Q psy17342        278 HIDFSHLYLTSSYDWSVKLWNIKEN-KPVHSFNEFRDYVMDVQWSPINPALFATVEVA---------GRVDLWNLNLDTE  347 (401)
Q Consensus       278 ~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~  347 (401)
                      .|+ ...|+.+...|.+.|-.-.+. .|+ .+.. .-.+....|+++|. +||.++.+         +.|.+|..- ++.
T Consensus       226 ~pd-rP~lavcy~nGr~QiMR~eND~~Pv-v~dt-gm~~vgakWnh~G~-vLAvcG~~~da~~~~d~n~v~Fysp~-G~i  300 (1189)
T KOG2041|consen  226 PPD-RPRLAVCYANGRMQIMRSENDPEPV-VVDT-GMKIVGAKWNHNGA-VLAVCGNDSDADEPTDSNKVHFYSPY-GHI  300 (1189)
T ss_pred             CCC-CCEEEEEEcCceehhhhhcCCCCCe-EEec-ccEeecceecCCCc-EEEEccCcccccCccccceEEEeccc-hhh
Confidence            123 678999999999988765443 333 2333 36788999999997 78888754         355555443 333


Q ss_pred             CcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342        348 VPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV  387 (401)
Q Consensus       348 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~  387 (401)
                      +..++   -....|++++|-..|-.+|.+- |+.|++=++
T Consensus       301 ~gtlk---vpg~~It~lsWEg~gLriA~Av-dsfiyfanI  336 (1189)
T KOG2041|consen  301 VGTLK---VPGSCITGLSWEGTGLRIAIAV-DSFIYFANI  336 (1189)
T ss_pred             eEEEe---cCCceeeeeEEcCCceEEEEEe-cceEEEEee
Confidence            33333   2245688888876665544332 334444333

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=3.9e-10  Score=102.14  Aligned_cols=215  Identities=12%  Similarity=0.106  Sum_probs=131.6

Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC---CcEEEeeccCCCCCccccccccccccCC
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND---GRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      .|.++|.+.....       .+..+...+....|  +|+++.|+..+.+   ..|.+|++.... ......        .
T Consensus       180 ~l~~~d~~g~~~~-------~l~~~~~~~~~p~w--SpDG~~la~~s~~~~~~~l~~~~l~~g~-~~~l~~--------~  241 (430)
T PRK00178        180 TLQRSDYDGARAV-------TLLQSREPILSPRW--SPDGKRIAYVSFEQKRPRIFVQNLDTGR-REQITN--------F  241 (430)
T ss_pred             EEEEECCCCCCce-------EEecCCCceeeeeE--CCCCCEEEEEEcCCCCCEEEEEECCCCC-EEEccC--------C
Confidence            4777787765432       12356678889999  9999998876644   358888887522 222111        1


Q ss_pred             ccceEEEEeccCCCCeEEE-EcCCc--eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC-CC--
Q psy17342        219 NLAVLSLAFPQNDVNNFVV-GCEDG--NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DW--  292 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~-~~~d~--~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~--  292 (401)
                      ...+....|+ |+++.|+. ...++  .|+++|+.+..   ...+..+........|+|+      ++.++..+. ++  
T Consensus       242 ~g~~~~~~~S-pDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~~spD------g~~i~f~s~~~g~~  311 (430)
T PRK00178        242 EGLNGAPAWS-PDGSKLAFVLSKDGNPEIYVMDLASRQ---LSRVTNHPAIDTEPFWGKD------GRTLYFTSDRGGKP  311 (430)
T ss_pred             CCCcCCeEEC-CCCCEEEEEEccCCCceEEEEECCCCC---eEEcccCCCCcCCeEECCC------CCEEEEEECCCCCc
Confidence            2234568899 78887764 44454  58888887543   3344445555667889998      566555443 33  


Q ss_pred             eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCC--EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC
Q psy17342        293 SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAG--RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG  370 (401)
Q Consensus       293 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  370 (401)
                      .|.++|+.+++.. .+...........|+|+|+.++++...++  .|.++|+.+++.. .+.    .........|+|||
T Consensus       312 ~iy~~d~~~g~~~-~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt----~~~~~~~p~~spdg  385 (430)
T PRK00178        312 QIYKVNVNGGRAE-RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT----DTSLDESPSVAPNG  385 (430)
T ss_pred             eEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc----CCCCCCCceECCCC
Confidence            5777777666543 33322233446789999985444443343  5888898876532 221    11122356899999


Q ss_pred             cEEEEEecC---CcEEEEEeccC
Q psy17342        371 TQLCVGDEK---GAITMFDVGEV  390 (401)
Q Consensus       371 ~~l~~~~~d---g~v~iw~~~~~  390 (401)
                      +.|+..+.+   ..|+++++..+
T Consensus       386 ~~i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        386 TMLIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             CEEEEEEecCCceEEEEEECCCC
Confidence            998776643   34667777544

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=1.4e-10  Score=104.65  Aligned_cols=220  Identities=15%  Similarity=0.088  Sum_probs=131.9

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe--
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ--  142 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~--  142 (401)
                      ...+.+..|+|||+.|+..++..       ....|.+||+.+++...  .....+.....+|+|++..++++.+.+|.  
T Consensus       217 ~~~~~~p~wSPDG~~La~~s~~~-------g~~~L~~~dl~tg~~~~--lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~  287 (448)
T PRK04792        217 PEPLMSPAWSPDGRKLAYVSFEN-------RKAEIFVQDIYTQVREK--VTSFPGINGAPRFSPDGKKLALVLSKDGQPE  287 (448)
T ss_pred             CCcccCceECCCCCEEEEEEecC-------CCcEEEEEECCCCCeEE--ecCCCCCcCCeeECCCCCEEEEEEeCCCCeE
Confidence            45677899999999999887421       23468899988765322  22223445678999999767677777775  


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-CCcEEE--eeccCCCCCccccccccccccCCc
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-DGRLCS--WSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~--wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                      |.++|+.+++...       +..+.......+|  +|++..++..+. ++...+  +|+...  ....  +..     ..
T Consensus       288 Iy~~dl~tg~~~~-------lt~~~~~~~~p~w--SpDG~~I~f~s~~~g~~~Iy~~dl~~g--~~~~--Lt~-----~g  349 (448)
T PRK04792        288 IYVVDIATKALTR-------ITRHRAIDTEPSW--HPDGKSLIFTSERGGKPQIYRVNLASG--KVSR--LTF-----EG  349 (448)
T ss_pred             EEEEECCCCCeEE-------CccCCCCccceEE--CCCCCEEEEEECCCCCceEEEEECCCC--CEEE--Eec-----CC
Confidence            7777877665321       1234445567788  899988776554 455444  455431  1111  111     11


Q ss_pred             cceEEEEeccCCCCeEEEEcC-Cc--eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe-CCCe--
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCE-DG--NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS-YDWS--  293 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~-d~--~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~~--  293 (401)
                      ......+|+ ++++.++..+. ++  .|.++|+.+...   ..+... .......|+|+      ++.++..+ .++.  
T Consensus       350 ~~~~~~~~S-pDG~~l~~~~~~~g~~~I~~~dl~~g~~---~~lt~~-~~d~~ps~spd------G~~I~~~~~~~g~~~  418 (448)
T PRK04792        350 EQNLGGSIT-PDGRSMIMVNRTNGKFNIARQDLETGAM---QVLTST-RLDESPSVAPN------GTMVIYSTTYQGKQV  418 (448)
T ss_pred             CCCcCeeEC-CCCCEEEEEEecCCceEEEEEECCCCCe---EEccCC-CCCCCceECCC------CCEEEEEEecCCceE
Confidence            122346888 78888776654 33  456667664432   222221 12234578888      55555444 4443  


Q ss_pred             EEEEEeeCCCceEEEeecCCceEEEEECCC
Q psy17342        294 VKLWNIKENKPVHSFNEFRDYVMDVQWSPI  323 (401)
Q Consensus       294 i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~  323 (401)
                      +.+++. +++....+..+.+.+...+|+|-
T Consensus       419 l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        419 LAAVSI-DGRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             EEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence            666676 56666667666667788888873

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=4.3e-10  Score=100.74  Aligned_cols=246  Identities=12%  Similarity=0.038  Sum_probs=143.5

Q ss_pred             CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCc--eEEEEecCC--eEEEEECCCCCCCceeeccccccCCCCcEE
Q psy17342         96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPY--LILGGTYSG--QIVLWDTRVQKKTPVHRTPLSVMAHTHPVF  171 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~g~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  171 (401)
                      ...|.+.|.+.+... .+ ........+-+|+|||..  ++++...+|  .|.+.++.+++...+       ....+...
T Consensus       164 ~~~l~~~d~dG~~~~-~l-t~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-------t~~~g~~~  234 (428)
T PRK01029        164 QGELWSVDYDGQNLR-PL-TQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-------LALQGNQL  234 (428)
T ss_pred             cceEEEEcCCCCCce-Ec-ccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-------ecCCCCcc
Confidence            346777787744322 22 233556678899999865  333444444  577778877654322       22333445


Q ss_pred             EEEEeecCCceEEEEEeC-CC----cEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc-CCce--
Q psy17342        172 CMSVIGTQNAHNLISISN-DG----RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-EDGN--  243 (401)
Q Consensus       172 ~~~~~~~~~~~~l~s~~~-dg----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~--  243 (401)
                      ..+|  +|+|+.|+..+. +|    .+..|++..... .....+..    .........+|+ |+++.|+..+ .+|.  
T Consensus       235 ~p~w--SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~-g~~~~lt~----~~~~~~~~p~wS-PDG~~Laf~s~~~g~~~  306 (428)
T PRK01029        235 MPTF--SPRKKLLAFISDRYGNPDLFIQSFSLETGAI-GKPRRLLN----EAFGTQGNPSFS-PDGTRLVFVSNKDGRPR  306 (428)
T ss_pred             ceEE--CCCCCEEEEEECCCCCcceeEEEeecccCCC-CcceEeec----CCCCCcCCeEEC-CCCCEEEEEECCCCCce
Confidence            6788  999988887653 23    334466553210 11111111    111234567999 8888777655 4564  


Q ss_pred             EEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC---CeEEEEEeeCCCceEEEeecCCceEEEEE
Q psy17342        244 VYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD---WSVKLWNIKENKPVHSFNEFRDYVMDVQW  320 (401)
Q Consensus       244 i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~v~~  320 (401)
                      |+++++..... ....+..+...+....|+|+      ++.|+..+.+   ..|.+||+.+++.. .+......+....|
T Consensus       307 ly~~~~~~~g~-~~~~lt~~~~~~~~p~wSPD------G~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~w  378 (428)
T PRK01029        307 IYIMQIDPEGQ-SPRLLTKKYRNSSCPAWSPD------GKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSW  378 (428)
T ss_pred             EEEEECccccc-ceEEeccCCCCccceeECCC------CCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEE
Confidence            44445432111 23344444556778899999      6777765543   46999999877654 34333445678999


Q ss_pred             CCCCCcEEEEEec--CCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC
Q psy17342        321 SPINPALFATVEV--AGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG  370 (401)
Q Consensus       321 ~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  370 (401)
                      +|+|+.++++...  ...|.++|+..++.....    .....+...+|+|-.
T Consensus       379 SpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt----~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        379 AIDSLHLVYSAGNSNESELYLISLITKKTRKIV----IGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCCCCEEEEEECCCCCceEEEEECCCCCEEEee----cCCCcccCceecCCC
Confidence            9999855555543  357888898876533222    233445667888753

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.37  E-value=4e-10  Score=96.15  Aligned_cols=278  Identities=13%  Similarity=0.155  Sum_probs=163.5

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC---
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG---  141 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg---  141 (401)
                      +-++..++|||.|.+|++..           ...|.+|.-.....+..  +. ...|..+.|+|.+ .+|.+-+..+   
T Consensus        32 ~~p~~~~~~SP~G~~l~~~~-----------~~~V~~~~g~~~~~l~~--~~-~~~V~~~~fSP~~-kYL~tw~~~pi~~   96 (561)
T COG5354          32 NWPVAYVSESPLGTYLFSEH-----------AAGVECWGGPSKAKLVR--FR-HPDVKYLDFSPNE-KYLVTWSREPIIE   96 (561)
T ss_pred             CcchhheeecCcchheehhh-----------ccceEEccccchhheee--ee-cCCceecccCccc-ceeeeeccCCccC
Confidence            35688999999999999877           67799999876543322  22 4679999999976 7888765433   


Q ss_pred             ------------eEEEEECCCCCCCceeeccccccCCCCc--EE-EEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcc
Q psy17342        142 ------------QIVLWDTRVQKKTPVHRTPLSVMAHTHP--VF-CMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQE  206 (401)
Q Consensus       142 ------------~v~iw~~~~~~~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~  206 (401)
                                  .+.+||..++......      .....+  .+ -+.|  +-+..+.+-. ....+.++++...-....
T Consensus        97 pe~e~sp~~~~n~~~vwd~~sg~iv~sf------~~~~q~~~~Wp~~k~--s~~D~y~ARv-v~~sl~i~e~t~n~~~~p  167 (561)
T COG5354          97 PEIEISPFTSKNNVFVWDIASGMIVFSF------NGISQPYLGWPVLKF--SIDDKYVARV-VGSSLYIHEITDNIEEHP  167 (561)
T ss_pred             hhhccCCccccCceeEEeccCceeEeec------cccCCcccccceeee--eecchhhhhh-ccCeEEEEecCCccccCc
Confidence                        4899999988754322      222222  23 3444  4444444333 222456666411000000


Q ss_pred             ccccccccccCCccceEEEEecc------------------------------------------------CCCCeEEEE
Q psy17342        207 TRDLQYNNKQTKNLAVLSLAFPQ------------------------------------------------NDVNNFVVG  238 (401)
Q Consensus       207 ~~~~~~~~~~~~~~~v~~~~~~~------------------------------------------------~~~~~l~~~  238 (401)
                      ...+       ....+...+|+|                                                +.++++++-
T Consensus       168 ~~~l-------r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l  240 (561)
T COG5354         168 FKNL-------RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVL  240 (561)
T ss_pred             hhhc-------cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEE
Confidence            0000       112233333332                                                233332211


Q ss_pred             c-----------CCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEE--eCCCeEEEEEeeCCCce
Q psy17342        239 C-----------EDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS--SYDWSVKLWNIKENKPV  305 (401)
Q Consensus       239 ~-----------~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~  305 (401)
                      .           ....+++++++...   +.....-.++|....|.|.      ++.|++.  -.+..+.++|++.. ..
T Consensus       241 ~~t~~ksnKsyfgesnLyl~~~~e~~---i~V~~~~~~pVhdf~W~p~------S~~F~vi~g~~pa~~s~~~lr~N-l~  310 (561)
T COG5354         241 VMTHTKSNKSYFGESNLYLLRITERS---IPVEKDLKDPVHDFTWEPL------SSRFAVISGYMPASVSVFDLRGN-LR  310 (561)
T ss_pred             EEEeeecccceeccceEEEEeecccc---cceeccccccceeeeeccc------CCceeEEecccccceeecccccc-eE
Confidence            0           11234455544222   1111144789999999998      4555554  46889999999865 33


Q ss_pred             EEEeecCCceEEEEECCCCCcEEEEEecC---CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEe-----
Q psy17342        306 HSFNEFRDYVMDVQWSPINPALFATVEVA---GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGD-----  377 (401)
Q Consensus       306 ~~~~~~~~~v~~v~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----  377 (401)
                      ..  .....=+.+.|+|.+++ ++.++-|   |.+-+||....-...  ....  ....+.+.|+|||+++.+..     
T Consensus       311 ~~--~Pe~~rNT~~fsp~~r~-il~agF~nl~gni~i~~~~~rf~~~--~~~~--~~n~s~~~wspd~qF~~~~~ts~k~  383 (561)
T COG5354         311 FY--FPEQKRNTIFFSPHERY-ILFAGFDNLQGNIEIFDPAGRFKVA--GAFN--GLNTSYCDWSPDGQFYDTDTTSEKL  383 (561)
T ss_pred             Ee--cCCcccccccccCcccE-EEEecCCccccceEEeccCCceEEE--EEee--cCCceEeeccCCceEEEecCCCccc
Confidence            33  33555678899999985 4444433   789999987644322  1111  23355688999999998764     


Q ss_pred             -cCCcEEEEEeccC
Q psy17342        378 -EKGAITMFDVGEV  390 (401)
Q Consensus       378 -~dg~v~iw~~~~~  390 (401)
                       .|..|.|||+...
T Consensus       384 ~~Dn~i~l~~v~g~  397 (561)
T COG5354         384 RVDNSIKLWDVYGA  397 (561)
T ss_pred             ccCcceEEEEecCc
Confidence             3778999999765

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.36  E-value=7.3e-10  Score=94.49  Aligned_cols=253  Identities=11%  Similarity=0.061  Sum_probs=154.0

Q ss_pred             ecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecC------CCeeEEEEeCCCCceEEEEec-CCeEEE
Q psy17342         73 WSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ------SPVLSCCFAKFNPYLILGGTY-SGQIVL  145 (401)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~~g~~-dg~v~i  145 (401)
                      ++||++.|.++.....+..-+..+..|.+||..+.+.+.++.....      .....++++|+|+.++++--. +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            9999999998884333444455789999999999887776665321      223478999988544444423 789999


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccC-----Ccc
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT-----KNL  220 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~-----~~~  220 (401)
                      .|+.+++.......       .+.  ...| +..+.. +.+-+.||......+...++.. ......  +..     ...
T Consensus       133 vD~~~~kvv~ei~v-------p~~--~~vy-~t~e~~-~~~~~~Dg~~~~v~~d~~g~~~-~~~~~v--f~~~~~~v~~r  198 (352)
T TIGR02658       133 VDLEGKAFVRMMDV-------PDC--YHIF-PTANDT-FFMHCRDGSLAKVGYGTKGNPK-IKPTEV--FHPEDEYLINH  198 (352)
T ss_pred             EECCCCcEEEEEeC-------CCC--cEEE-EecCCc-cEEEeecCceEEEEecCCCceE-Eeeeee--ecCCccccccC
Confidence            99998875432211       111  1111 112222 2233456665555444322211 000000  000     011


Q ss_pred             ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCc---eeeecC-------CCCceeeeecCccCCCCCCCcEEEE-Ee
Q psy17342        221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGN---VECYEG-------HEGPVVGLSSHRAQGHIDFSHLYLT-SS  289 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~---~~~~~~-------~~~~v~~i~~~~~~~~~~~~~~l~s-~~  289 (401)
                      +    .|.+.++..+.+..+ |.|++.|+.......   ...+..       ..+...-++++|+      ++.+.. ..
T Consensus       199 P----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d------g~~lyV~~~  267 (352)
T TIGR02658       199 P----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA------RDRIYLLAD  267 (352)
T ss_pred             C----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC------CCEEEEEec
Confidence            1    345347777777777 999999975432221   111111       1233344889988      444444 31


Q ss_pred             ---------CCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCC-cEEEEEecCCEEEEEeCCCCCCCcce
Q psy17342        290 ---------YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINP-ALFATVEVAGRVDLWNLNLDTEVPAT  351 (401)
Q Consensus       290 ---------~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~  351 (401)
                               ..+.|.++|..+++.+..+.. ...+..++++|+++ .++++...++.|.++|..+++.+..+
T Consensus       268 ~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       268 QRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence                     125899999999999998886 56789999999998 55556657889999999988766554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=2.7e-10  Score=103.15  Aligned_cols=221  Identities=11%  Similarity=0.076  Sum_probs=134.2

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC--
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG--  141 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg--  141 (401)
                      +...+...+|+|+|+.|+..++..       ....|.+|++.+++...  .....+.+...+|+|++..++++.+.+|  
T Consensus       197 ~~~~~~~p~wSpDG~~la~~s~~~-------~~~~l~~~~l~~g~~~~--l~~~~g~~~~~~~SpDG~~la~~~~~~g~~  267 (430)
T PRK00178        197 SREPILSPRWSPDGKRIAYVSFEQ-------KRPRIFVQNLDTGRREQ--ITNFEGLNGAPAWSPDGSKLAFVLSKDGNP  267 (430)
T ss_pred             CCCceeeeeECCCCCEEEEEEcCC-------CCCEEEEEECCCCCEEE--ccCCCCCcCCeEECCCCCEEEEEEccCCCc
Confidence            456789999999999999887421       23579999998765332  2222445567899999866666665555  


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-CCc--EEEeeccCCCCCccccccccccccCC
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-DGR--LCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      .|.+||+.++....       +..+........|  +|++..++..+. +|.  |.++++.... ...   +..     .
T Consensus       268 ~Iy~~d~~~~~~~~-------lt~~~~~~~~~~~--spDg~~i~f~s~~~g~~~iy~~d~~~g~-~~~---lt~-----~  329 (430)
T PRK00178        268 EIYVMDLASRQLSR-------VTNHPAIDTEPFW--GKDGRTLYFTSDRGGKPQIYKVNVNGGR-AER---VTF-----V  329 (430)
T ss_pred             eEEEEECCCCCeEE-------cccCCCCcCCeEE--CCCCCEEEEEECCCCCceEEEEECCCCC-EEE---eec-----C
Confidence            57888888765321       1234444556778  899988776654 444  5556654321 111   111     1


Q ss_pred             ccceEEEEeccCCCCeEEEEcCC-c--eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC-CC--
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCED-G--NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DW--  292 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d-~--~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~--  292 (401)
                      ........|+ ++++.++....+ +  .|+++|+.+...   ..+. +........|+|+      ++.++..+. ++  
T Consensus       330 ~~~~~~~~~S-pdg~~i~~~~~~~~~~~l~~~dl~tg~~---~~lt-~~~~~~~p~~spd------g~~i~~~~~~~g~~  398 (430)
T PRK00178        330 GNYNARPRLS-ADGKTLVMVHRQDGNFHVAAQDLQRGSV---RILT-DTSLDESPSVAPN------GTMLIYATRQQGRG  398 (430)
T ss_pred             CCCccceEEC-CCCCEEEEEEccCCceEEEEEECCCCCE---EEcc-CCCCCCCceECCC------CCEEEEEEecCCce
Confidence            1123356788 788888776543 3  478888875432   2222 1222235688888      566665554 33  


Q ss_pred             eEEEEEeeCCCceEEEeecCCceEEEEECCC
Q psy17342        293 SVKLWNIKENKPVHSFNEFRDYVMDVQWSPI  323 (401)
Q Consensus       293 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~  323 (401)
                      .+.+.++. +.....+..+.+.+...+|+|-
T Consensus       399 ~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        399 VLMLVSIN-GRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             EEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence            46666664 4444555555566777788874

>KOG2315|consensus

Probab=99.32  E-value=2e-09  Score=93.09  Aligned_cols=283  Identities=11%  Similarity=0.108  Sum_probs=174.8

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEE-----ec-
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGG-----TY-  139 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g-----~~-  139 (401)
                      ......+++++|++++.+.           +..++|++..+...  ..... ...++++.|+|.+ .+|.+-     .. 
T Consensus        35 ~~~~v~~~S~~G~lfA~~~-----------~~~v~i~~~~~~~~--~lt~~-~~~~~~L~fSP~g-~yL~T~e~~~i~~~   99 (566)
T KOG2315|consen   35 RPCNVFAYSNNGRLFAYSD-----------NQVVKVFEIATLKV--VLCVE-LKKTYDLLFSPKG-NYLLTWEPWAIYGP   99 (566)
T ss_pred             CcceeEEEcCCCcEEEEEc-----------CCeEEEEEccCCcE--EEEec-cceeeeeeecccc-cccccccccccccC
Confidence            3467788999998777766           88999999987652  22222 3389999999977 555531     11 


Q ss_pred             ----CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccc
Q psy17342        140 ----SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNK  215 (401)
Q Consensus       140 ----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  215 (401)
                          .-.+.+|++.+......      +......-++..|  +.+..+ +.--..+.+.+|++.........+       
T Consensus       100 ~~~~~pn~~v~~vet~~~~s~------~q~k~Q~~W~~qf--s~dEsl-~arlv~nev~f~~~~~f~~~~~kl-------  163 (566)
T KOG2315|consen  100 KNASNPNVLVYNVETGVQRSQ------IQKKMQNGWVPQF--SIDESL-AARLVSNEVQFYDLGSFKTIQHKL-------  163 (566)
T ss_pred             CCCCCCceeeeeeccceehhh------eehhhhcCccccc--ccchhh-hhhhhcceEEEEecCCccceeeee-------
Confidence                23577999988432211      1111122257788  666543 333334679999987633333222       


Q ss_pred             cCCccceEEEEeccC-CCCeEEE-----EcCCceEEEEeCCCCCC-C--ceeeecCCCCceeeeecCccCCCCCCCcEEE
Q psy17342        216 QTKNLAVLSLAFPQN-DVNNFVV-----GCEDGNVYSACRHGNKA-G--NVECYEGHEGPVVGLSSHRAQGHIDFSHLYL  286 (401)
Q Consensus       216 ~~~~~~v~~~~~~~~-~~~~l~~-----~~~d~~i~~~~~~~~~~-~--~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~  286 (401)
                        |...|+.+.++|. ....+++     .+.-+.+++|....... .  ..++|.  ...-..+.|++..     ..+|+
T Consensus       164 --~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~g-----t~LLv  234 (566)
T KOG2315|consen  164 --SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLG-----TALLV  234 (566)
T ss_pred             --eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCC-----ceEEE
Confidence              5567999999954 2334443     24456688887641110 0  111221  1122357777763     23443


Q ss_pred             EEeC--C---------CeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEE-EecCCEEEEEeCCCCCCCcceEEe
Q psy17342        287 TSSY--D---------WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFAT-VEVAGRVDLWNLNLDTEVPATSAI  354 (401)
Q Consensus       287 s~~~--d---------~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~  354 (401)
                      ..+.  |         .++++.++........+.. .++|.++.|+|++..+.++ |-.-..+.|||++..   +.+.  
T Consensus       235 LastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k-~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~---~v~d--  308 (566)
T KOG2315|consen  235 LASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK-EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK---PVFD--  308 (566)
T ss_pred             EEEEeecCCCccccccceEEEEEecCceEEEecCC-CCCceEEEECCCCCEEEEEEecccceEEEEcCCCC---EeEe--
Confidence            3332  3         3677877774455555554 7899999999999744433 334568999999853   2232  


Q ss_pred             ecCCCCeEEEEecCCCcEEEEEec---CCcEEEEEeccCccceeee
Q psy17342        355 VEGAPALSRVTWTPNGTQLCVGDE---KGAITMFDVGEVGIACLKF  397 (401)
Q Consensus       355 ~~~~~~v~~~~~s~~g~~l~~~~~---dg~v~iw~~~~~~~~~l~~  397 (401)
                       -..++=+++-|+|.|++|+.++-   .|.|-|||+.+.  +++..
T Consensus       309 -f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~--K~i~~  351 (566)
T KOG2315|consen  309 -FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR--KLIAK  351 (566)
T ss_pred             -CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccch--hhccc
Confidence             23566778999999999988775   478999999985  45543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.32  E-value=5.1e-11  Score=95.38  Aligned_cols=254  Identities=13%  Similarity=0.210  Sum_probs=155.9

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCC------------CcEEEEEEeecCCceEEE
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHT------------HPVFCMSVIGTQNAHNLI  185 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~~~l~  185 (401)
                      ...|+++.|-..| .+|++|...|.|.++.-.... ....+....+++|.            ..|..+.|........++
T Consensus        26 ad~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~-~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          26 ADKITAVEFDETG-LYLATGDKGGRVVLFEREKSY-GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             cceeeEEEecccc-ceEeecCCCceEEEeeccccc-ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            4678999998866 799999888999999765433 11121112234443            357888886555556788


Q ss_pred             EEeCCCcEEEeeccCCCCCccccc---cccccccCCccceEEEEeccCCCCeEEEE--c-CCceEEEEeCCCCCCCceee
Q psy17342        186 SISNDGRLCSWSLEMLSSPQETRD---LQYNNKQTKNLAVLSLAFPQNDVNNFVVG--C-EDGNVYSACRHGNKAGNVEC  259 (401)
Q Consensus       186 s~~~dg~i~~wd~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~-~d~~i~~~~~~~~~~~~~~~  259 (401)
                      ..+.|.+|++|.+....  .....   +......+..+++++..       .|..+  + .|..|...        +.+.
T Consensus       104 lstNdktiKlWKiyekn--lk~va~nnls~~~~~~~~g~~~s~~-------~l~lprls~hd~iiaa~--------p~rv  166 (460)
T COG5170         104 LSTNDKTIKLWKIYEKN--LKVVAENNLSDSFHSPMGGPLTSTK-------ELLLPRLSEHDEIIAAK--------PCRV  166 (460)
T ss_pred             EecCCceeeeeeeeccc--chhhhccccccccccccCCCcCCHH-------HhhcccccccceEEEec--------ccee
Confidence            88899999999986411  11100   00000000111111110       00000  0 01111111        1112


Q ss_pred             e-cCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceE---EEeecC-----CceEEEEECCCCCcEEEE
Q psy17342        260 Y-EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVH---SFNEFR-----DYVMDVQWSPINPALFAT  330 (401)
Q Consensus       260 ~-~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~-----~~v~~v~~~~~~~~~l~~  330 (401)
                      + ..|.-.|++++++.+      .+.++++. |-+|.+|++.-...-.   .++.|.     .-|++..|+|....++.-
T Consensus       167 yaNaH~yhiNSiS~NsD------~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmY  239 (460)
T COG5170         167 YANAHPYHINSISFNSD------KETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMY  239 (460)
T ss_pred             ccccceeEeeeeeecCc------hheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEE
Confidence            2 468888999999988      56777665 8899999986533222   233332     358899999987778888


Q ss_pred             EecCCEEEEEeCCCCCCC----cceEEeec---------CCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeee
Q psy17342        331 VEVAGRVDLWNLNLDTEV----PATSAIVE---------GAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKF  397 (401)
Q Consensus       331 ~~~d~~i~iwd~~~~~~~----~~~~~~~~---------~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~  397 (401)
                      .+..|.|++-|++.....    ..+.....         -...|..+.|+++|+++++-+.- +|+|||++..+ .++++
T Consensus       240 SsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k-~pikT  317 (460)
T COG5170         240 SSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAK-NPIKT  317 (460)
T ss_pred             ecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEeccccc-CCcee
Confidence            888999999999843211    11110011         13468899999999999887765 69999999876 78877


Q ss_pred             ee
Q psy17342        398 IT  399 (401)
Q Consensus       398 ~~  399 (401)
                      ++
T Consensus       318 i~  319 (460)
T COG5170         318 IP  319 (460)
T ss_pred             ec
Confidence            64

>KOG1912|consensus

Probab=99.32  E-value=4.5e-10  Score=100.67  Aligned_cols=292  Identities=15%  Similarity=0.131  Sum_probs=192.9

Q ss_pred             ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCC-----------CceEE
Q psy17342         67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFN-----------PYLIL  135 (401)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~l~  135 (401)
                      .-.++.|+|.| .+|.|+           ...|.+-|..+-+.++.+.. |...|+.+.|.|..           .-+|+
T Consensus        17 N~~A~Dw~~~G-LiAygs-----------hslV~VVDs~s~q~iqsie~-h~s~V~~VrWap~~~p~~llS~~~~~lliA   83 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGS-----------HSLVSVVDSRSLQLIQSIEL-HQSAVTSVRWAPAPSPRDLLSPSSSQLLIA   83 (1062)
T ss_pred             cccccccCccc-eEEEec-----------CceEEEEehhhhhhhhcccc-CccceeEEEeccCCCchhccCccccceeEE
Confidence            36778999998 677776           67888999887777766544 57899999998732           12678


Q ss_pred             EEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCc--eEEEEEeCCCcEEEeeccCCCCCccccccccc
Q psy17342        136 GGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNA--HNLISISNDGRLCSWSLEMLSSPQETRDLQYN  213 (401)
Q Consensus       136 ~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~  213 (401)
                      ++...|.|.+||+......      ..+..|..++..++|.+..+.  ..|++-....++.+|+..+++.   ..+... 
T Consensus        84 saD~~GrIil~d~~~~s~~------~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k---~Wk~~y-  153 (1062)
T KOG1912|consen   84 SADISGRIILVDFVLASVI------NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK---FWKYDY-  153 (1062)
T ss_pred             eccccCcEEEEEehhhhhh------hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce---eecccc-
Confidence            8888999999999877654      345789999999999765443  4677777888999999876332   222211 


Q ss_pred             cccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCC-----CceeeecCCCC------------c----------
Q psy17342        214 NKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKA-----GNVECYEGHEG------------P----------  266 (401)
Q Consensus       214 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----~~~~~~~~~~~------------~----------  266 (401)
                          ......|+.+.|-+.+.+..-+..|.+.+.+.-+.+.     +..+.-..|..            .          
T Consensus       154 ----s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~f  229 (1062)
T KOG1912|consen  154 ----SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYF  229 (1062)
T ss_pred             ----CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhH
Confidence                3345677999988999998888889888876543221     11111112221            0          


Q ss_pred             ---eeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCC-cEEEEEecCCEEEEEeC
Q psy17342        267 ---VVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINP-ALFATVEVAGRVDLWNL  342 (401)
Q Consensus       267 ---v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~l~~~~~d~~i~iwd~  342 (401)
                         .-.++|+|..     .+.+.. .....+.++|++-..++.......+.+.-+.+-|+.+ ..|.+...||.+.||-.
T Consensus       230 ity~a~faf~p~~-----rn~lfi-~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvr  303 (1062)
T KOG1912|consen  230 ITYCAQFAFSPHW-----RNILFI-TFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR  303 (1062)
T ss_pred             HHHHHhhhcChhh-----hceEEE-EeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence               1124567763     344333 3478899999998888888887777777788877753 36788889999999976


Q ss_pred             CCCCCCc-----ceEEeec---------CCCCeEEEEecCC-CcEEEEEecCCcEEEEEeccCc
Q psy17342        343 NLDTEVP-----ATSAIVE---------GAPALSRVTWTPN-GTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       343 ~~~~~~~-----~~~~~~~---------~~~~v~~~~~s~~-g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      +......     .+....+         ....+......|. ...++.--.+|.+.+|.+.++.
T Consensus       304 k~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r  367 (1062)
T KOG1912|consen  304 KEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR  367 (1062)
T ss_pred             eccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence            5421110     1110000         0111222233343 3344445567889999998764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=1e-09  Score=98.31  Aligned_cols=229  Identities=13%  Similarity=0.005  Sum_probs=134.1

Q ss_pred             cceEEEEecCCCCCe--EEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC--
Q psy17342         66 RNVTYMDWSTQHPEL--LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG--  141 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l--~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg--  141 (401)
                      ..+.+-+|+|||+.+  +..++..       ....|.+.++.+++...  .....+.....+|+|||..++++...+|  
T Consensus       185 ~~~~sP~wSPDG~~~~~~y~S~~~-------g~~~I~~~~l~~g~~~~--lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~  255 (428)
T PRK01029        185 SLSITPTWMHIGSGFPYLYVSYKL-------GVPKIFLGSLENPAGKK--ILALQGNQLMPTFSPRKKLLAFISDRYGNP  255 (428)
T ss_pred             CCcccceEccCCCceEEEEEEccC-------CCceEEEEECCCCCceE--eecCCCCccceEECCCCCEEEEEECCCCCc
Confidence            456677999999874  3355311       23578888888665432  2333556667899999976666654434  


Q ss_pred             --eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEe-CCCcEEEeeccCCCCCccccccccccccCC
Q psy17342        142 --QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS-NDGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       142 --~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                        .+.+|++..+......+  + ...+.......+|  +|+|..|+..+ .+|...+|.+...........+.     ..
T Consensus       256 di~~~~~~~~~g~~g~~~~--l-t~~~~~~~~~p~w--SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-----~~  325 (428)
T PRK01029        256 DLFIQSFSLETGAIGKPRR--L-LNEAFGTQGNPSF--SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-----KK  325 (428)
T ss_pred             ceeEEEeecccCCCCcceE--e-ecCCCCCcCCeEE--CCCCCEEEEEECCCCCceEEEEECcccccceEEec-----cC
Confidence              23446665432111000  1 1122233456788  99999887765 46766666543211111111111     12


Q ss_pred             ccceEEEEeccCCCCeEEEEcCC---ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEE-eC--CC
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCED---GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS-SY--DW  292 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d---~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~-~~--d~  292 (401)
                      ...+....|+ |+++.|+..+.+   ..|++||+.+.+.   ..+......+....|+|+      ++.|+.. ..  ..
T Consensus       326 ~~~~~~p~wS-PDG~~Laf~~~~~g~~~I~v~dl~~g~~---~~Lt~~~~~~~~p~wSpD------G~~L~f~~~~~g~~  395 (428)
T PRK01029        326 YRNSSCPAWS-PDGKKIAFCSVIKGVRQICVYDLATGRD---YQLTTSPENKESPSWAID------SLHLVYSAGNSNES  395 (428)
T ss_pred             CCCccceeEC-CCCCEEEEEEcCCCCcEEEEEECCCCCe---EEccCCCCCccceEECCC------CCEEEEEECCCCCc
Confidence            3456778999 788888766543   4689999875542   333333345677899998      5666543 32  35


Q ss_pred             eEEEEEeeCCCceEEEeecCCceEEEEECCCC
Q psy17342        293 SVKLWNIKENKPVHSFNEFRDYVMDVQWSPIN  324 (401)
Q Consensus       293 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~  324 (401)
                      .|.++|+..++... +....+.+...+|+|..
T Consensus       396 ~L~~vdl~~g~~~~-Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        396 ELYLISLITKKTRK-IVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             eEEEEECCCCCEEE-eecCCCcccCceecCCC
Confidence            68888887766443 33345567788888854

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=1.9e-09  Score=97.39  Aligned_cols=215  Identities=11%  Similarity=0.098  Sum_probs=127.2

Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-CC--cEEEeeccCCCCCccccccccccccCC
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-DG--RLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      .|.++|.+......       +..+...+.+..|  +|+|+.|+..+. ++  .|.+||+.... .......        
T Consensus       199 ~l~i~d~dG~~~~~-------l~~~~~~~~~p~w--SPDG~~La~~s~~~g~~~L~~~dl~tg~-~~~lt~~--------  260 (448)
T PRK04792        199 QLMIADYDGYNEQM-------LLRSPEPLMSPAW--SPDGRKLAYVSFENRKAEIFVQDIYTQV-REKVTSF--------  260 (448)
T ss_pred             EEEEEeCCCCCceE-------eecCCCcccCceE--CCCCCEEEEEEecCCCcEEEEEECCCCC-eEEecCC--------
Confidence            56677776554321       2345667888999  999998887654 33  47778876522 2111111        


Q ss_pred             ccceEEEEeccCCCCeEEE-EcCCce--EEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC-CC--
Q psy17342        219 NLAVLSLAFPQNDVNNFVV-GCEDGN--VYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DW--  292 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~-~~~d~~--i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~--  292 (401)
                      .......+|+ |+++.|+. .+.++.  |+++|+.+..   ...+..+........|+|+      ++.++..+. ++  
T Consensus       261 ~g~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~dl~tg~---~~~lt~~~~~~~~p~wSpD------G~~I~f~s~~~g~~  330 (448)
T PRK04792        261 PGINGAPRFS-PDGKKLALVLSKDGQPEIYVVDIATKA---LTRITRHRAIDTEPSWHPD------GKSLIFTSERGGKP  330 (448)
T ss_pred             CCCcCCeeEC-CCCCEEEEEEeCCCCeEEEEEECCCCC---eEECccCCCCccceEECCC------CCEEEEEECCCCCc
Confidence            1223467899 78887764 455664  7777876443   3344445555677899998      566655443 44  


Q ss_pred             eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCC--EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC
Q psy17342        293 SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAG--RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG  370 (401)
Q Consensus       293 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  370 (401)
                      .|.++|+.+++. ..+..........+|+|+|+.++++...++  .|.++|+.++... .+.   . ........|+|||
T Consensus       331 ~Iy~~dl~~g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt---~-~~~d~~ps~spdG  404 (448)
T PRK04792        331 QIYRVNLASGKV-SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLT---S-TRLDESPSVAPNG  404 (448)
T ss_pred             eEEEEECCCCCE-EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-Ecc---C-CCCCCCceECCCC
Confidence            466667766654 333322333456789999986555554455  4555677765432 111   1 1122245799999


Q ss_pred             cEEEEEecC-Cc--EEEEEeccC
Q psy17342        371 TQLCVGDEK-GA--ITMFDVGEV  390 (401)
Q Consensus       371 ~~l~~~~~d-g~--v~iw~~~~~  390 (401)
                      +.|+..+.+ |.  +++++...+
T Consensus       405 ~~I~~~~~~~g~~~l~~~~~~G~  427 (448)
T PRK04792        405 TMVIYSTTYQGKQVLAAVSIDGR  427 (448)
T ss_pred             CEEEEEEecCCceEEEEEECCCC
Confidence            988765543 33  677777443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.31  E-value=8.7e-10  Score=99.75  Aligned_cols=216  Identities=12%  Similarity=0.076  Sum_probs=131.9

Q ss_pred             CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC--CeEEEEECCCCCCCceeeccccccCCCCcEEEE
Q psy17342         96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS--GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCM  173 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  173 (401)
                      ...|.++|..... . +....+...+.+.+|+|++..++++...+  ..|.+||+.++....       +..+.+.+.+.
T Consensus       169 ~~~l~~~d~~g~~-~-~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-------~~~~~~~~~~~  239 (417)
T TIGR02800       169 RYELQVADYDGAN-P-QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-------VASFPGMNGAP  239 (417)
T ss_pred             cceEEEEcCCCCC-C-EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-------eecCCCCccce
Confidence            4568888876332 2 33344566789999999985444443222  479999998765321       12344556678


Q ss_pred             EEeecCCceEEEE-EeCCC--cEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC-Cc--eEEEE
Q psy17342        174 SVIGTQNAHNLIS-ISNDG--RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE-DG--NVYSA  247 (401)
Q Consensus       174 ~~~~~~~~~~l~s-~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~--~i~~~  247 (401)
                      +|  +|+++.|+. .+.++  .|.+|++.... ..   .+..     +........|+ ++++.|+..+. .+  .|+++
T Consensus       240 ~~--spDg~~l~~~~~~~~~~~i~~~d~~~~~-~~---~l~~-----~~~~~~~~~~s-~dg~~l~~~s~~~g~~~iy~~  307 (417)
T TIGR02800       240 AF--SPDGSKLAVSLSKDGNPDIYVMDLDGKQ-LT---RLTN-----GPGIDTEPSWS-PDGKSIAFTSDRGGSPQIYMM  307 (417)
T ss_pred             EE--CCCCCEEEEEECCCCCccEEEEECCCCC-EE---ECCC-----CCCCCCCEEEC-CCCCEEEEEECCCCCceEEEE
Confidence            88  899987764 45444  47778876421 11   1111     22234456888 78888776654 33  57778


Q ss_pred             eCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC---eEEEEEeeCCCceEEEeecCCceEEEEECCCC
Q psy17342        248 CRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW---SVKLWNIKENKPVHSFNEFRDYVMDVQWSPIN  324 (401)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~  324 (401)
                      ++.+..   ...+..+...+....|+|+      +++++.++.++   .|.+||+.++.. ..+.. ........|+|++
T Consensus       308 d~~~~~---~~~l~~~~~~~~~~~~spd------g~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~-~~~~~~p~~spdg  376 (417)
T TIGR02800       308 DADGGE---VRRLTFRGGYNASPSWSPD------GDLIAFVHREGGGFNIAVMDLDGGGE-RVLTD-TGLDESPSFAPNG  376 (417)
T ss_pred             ECCCCC---EEEeecCCCCccCeEECCC------CCEEEEEEccCCceEEEEEeCCCCCe-EEccC-CCCCCCceECCCC
Confidence            876433   2334434556678899998      67888777665   788899877543 33332 2234556899999


Q ss_pred             CcEEEEEecCC--EEEEEeCC
Q psy17342        325 PALFATVEVAG--RVDLWNLN  343 (401)
Q Consensus       325 ~~~l~~~~~d~--~i~iwd~~  343 (401)
                      +.++++...++  .+.+.+..
T Consensus       377 ~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       377 RMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             CEEEEEEeCCCcEEEEEEECC
Confidence            85555444333  35555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.30  E-value=4.5e-09  Score=89.24  Aligned_cols=190  Identities=12%  Similarity=0.095  Sum_probs=131.8

Q ss_pred             ecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEec--------C---CCeeEEE-EeCCCCceEEEEecC
Q psy17342         73 WSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC--------Q---SPVLSCC-FAKFNPYLILGGTYS  140 (401)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~--------~---~~v~~~~-~~~~~~~~l~~g~~d  140 (401)
                      .+.||+.++...           .|.|.+||.++.... .+..+.        .   .+..-+. |++-...+++.-| -
T Consensus       274 ~nsDGkrIvFq~-----------~GdIylydP~td~le-kldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-R  340 (668)
T COG4946         274 ANSDGKRIVFQN-----------AGDIYLYDPETDSLE-KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-R  340 (668)
T ss_pred             cCCCCcEEEEec-----------CCcEEEeCCCcCcce-eeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-c
Confidence            356788887666           799999999864432 222220        0   1111122 4444446777775 5


Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC-cEEEeeccCCCCCccccccccccccCCc
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG-RLCSWSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                      |...|.+...+-..+        .+|.+.|.-..+  ..+++-++.|..|| .+-++|.+....  ..       ....-
T Consensus       341 GkaFi~~~~~~~~iq--------v~~~~~VrY~r~--~~~~e~~vigt~dgD~l~iyd~~~~e~--kr-------~e~~l  401 (668)
T COG4946         341 GKAFIMRPWDGYSIQ--------VGKKGGVRYRRI--QVDPEGDVIGTNDGDKLGIYDKDGGEV--KR-------IEKDL  401 (668)
T ss_pred             CcEEEECCCCCeeEE--------cCCCCceEEEEE--ccCCcceEEeccCCceEEEEecCCceE--EE-------eeCCc
Confidence            788888776654321        367777888887  66677889999999 899999875221  11       12245


Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC----eEE
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW----SVK  295 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~----~i~  295 (401)
                      +.|.++..+ ++++.++++.....+.+.|+.+.+.+.  .-+...+-|+.+.|+|+      ++++|-+--+|    .|+
T Consensus       402 g~I~av~vs-~dGK~~vvaNdr~el~vididngnv~~--idkS~~~lItdf~~~~n------sr~iAYafP~gy~tq~Ik  472 (668)
T COG4946         402 GNIEAVKVS-PDGKKVVVANDRFELWVIDIDNGNVRL--IDKSEYGLITDFDWHPN------SRWIAYAFPEGYYTQSIK  472 (668)
T ss_pred             cceEEEEEc-CCCcEEEEEcCceEEEEEEecCCCeeE--ecccccceeEEEEEcCC------ceeEEEecCcceeeeeEE
Confidence            679999999 899999999999999999998665332  33345678999999999      78888765544    699


Q ss_pred             EEEeeCCC
Q psy17342        296 LWNIKENK  303 (401)
Q Consensus       296 iwd~~~~~  303 (401)
                      ++|+..++
T Consensus       473 lydm~~~K  480 (668)
T COG4946         473 LYDMDGGK  480 (668)
T ss_pred             EEecCCCe
Confidence            99987754

>KOG1912|consensus

Probab=99.29  E-value=2.5e-10  Score=102.23  Aligned_cols=344  Identities=11%  Similarity=0.086  Sum_probs=205.4

Q ss_pred             hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecC---CCCCeEEE
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWST---QHPELLLA   83 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~   83 (401)
                      .-.||++...|-|.+||+.....+-.+.                            .|.++|..++|-|   +.+.++.+
T Consensus        79 ~lliAsaD~~GrIil~d~~~~s~~~~l~----------------------------~~~~~~qdl~W~~~rd~Srd~Lla  130 (1062)
T KOG1912|consen   79 QLLIASADISGRIILVDFVLASVINWLS----------------------------HSNDSVQDLCWVPARDDSRDVLLA  130 (1062)
T ss_pred             ceeEEeccccCcEEEEEehhhhhhhhhc----------------------------CCCcchhheeeeeccCcchheeEE
Confidence            4468889999999999987666332221                            2446677777755   34344444


Q ss_pred             EeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCC--cee----
Q psy17342         84 SYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKT--PVH----  157 (401)
Q Consensus        84 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~--~~~----  157 (401)
                      -.         ....+.+|+..+|+..-.+.+. .....|+.+.|...+.+..-+..|.+.+-+.-.....  +..    
T Consensus       131 Ih---------~ss~lvLwntdtG~k~Wk~~ys-~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI  200 (1062)
T KOG1912|consen  131 IH---------GSSTLVLWNTDTGEKFWKYDYS-HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQI  200 (1062)
T ss_pred             ec---------CCcEEEEEEccCCceeeccccC-CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEE
Confidence            42         6789999999998876555444 4456668888876665555555666665544221110  000    


Q ss_pred             ec--------------------------------cccccCCCC------------------------------cEEEEEE
Q psy17342        158 RT--------------------------------PLSVMAHTH------------------------------PVFCMSV  175 (401)
Q Consensus       158 ~~--------------------------------~~~~~~~~~------------------------------~v~~~~~  175 (401)
                      ..                                .+.+..|-.                              .+.-+.+
T Consensus       201 ~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~v  280 (1062)
T KOG1912|consen  201 TSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDV  280 (1062)
T ss_pred             ecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEe
Confidence            00                                000111111                              1222334


Q ss_pred             eecCCceEEEEEeCCCcEEEeeccCCCCCccc----ccc--ccc---cccCCccceEEEEeccCCCCeEEEEcCCceEEE
Q psy17342        176 IGTQNAHNLISISNDGRLCSWSLEMLSSPQET----RDL--QYN---NKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYS  246 (401)
Q Consensus       176 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~----~~~--~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~  246 (401)
                      .|.+..+.|+..-.||.+.+|--+........    +..  ..+   ........+......|...+.++.--.+|.+.+
T Consensus       281 lP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~  360 (1062)
T KOG1912|consen  281 LPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTF  360 (1062)
T ss_pred             ccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHH
Confidence            45666778889999999999976531111100    000  000   000011122222333333555555556677777


Q ss_pred             EeCCCCCCCc-----------------------------eeeecCCCCceeeeecCccCCC------C------CCCcEE
Q psy17342        247 ACRHGNKAGN-----------------------------VECYEGHEGPVVGLSSHRAQGH------I------DFSHLY  285 (401)
Q Consensus       247 ~~~~~~~~~~-----------------------------~~~~~~~~~~v~~i~~~~~~~~------~------~~~~~l  285 (401)
                      |.+.+++...                             +....+|....++....|...-      +      ..-.++
T Consensus       361 w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLv  440 (1062)
T KOG1912|consen  361 WQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLV  440 (1062)
T ss_pred             HhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeE
Confidence            7765322110                             0011235555555554442100      0      012478


Q ss_pred             EEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEe----------cCCEEEEEeCCCCCCCcceEEee
Q psy17342        286 LTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVE----------VAGRVDLWNLNLDTEVPATSAIV  355 (401)
Q Consensus       286 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~  355 (401)
                      |.|...|+|.++|+.++.....+..|.+.|.++.|-....  |++.+          .-+.+.+-|+++|.....-....
T Consensus       441 AvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss--lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~  518 (1062)
T KOG1912|consen  441 AVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS--LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK  518 (1062)
T ss_pred             EeecCCceEEEEEecchhhhhhhcccccceeeeeecccee--EEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence            8899999999999999999999999999999999987764  33333          23567888999886543322223


Q ss_pred             cCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        356 EGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       356 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      ....+|..+..|..|+||+..-.+.-+-+||+++.
T Consensus       519 ~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~  553 (1062)
T KOG1912|consen  519 PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL  553 (1062)
T ss_pred             CCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence            45688999999999999999999999999999765

>KOG2041|consensus

Probab=99.28  E-value=2.1e-10  Score=101.87  Aligned_cols=239  Identities=17%  Similarity=0.222  Sum_probs=166.0

Q ss_pred             cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCcee---------eccccccCCCCcEEEEEEeecCCceEEEEE
Q psy17342        117 CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVH---------RTPLSVMAHTHPVFCMSVIGTQNAHNLISI  187 (401)
Q Consensus       117 ~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  187 (401)
                      .+....|++|+... .++++|+.||.+++..+.+.......         ....++.+|++.|.-+.|  +.....|-+.
T Consensus        13 nnvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTW--Ne~~QKLTtS   89 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTW--NENNQKLTTS   89 (1189)
T ss_pred             CCceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEe--cccccccccc
Confidence            45678899999854 79999999999999988764321111         111245799999999999  7788889999


Q ss_pred             eCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCce
Q psy17342        188 SNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPV  267 (401)
Q Consensus       188 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v  267 (401)
                      ..+|.|.+|-+-.+.-......      ...++-|.+++|+ .+|..+.....||.|.+=.+.++.. .-+.+++.  ..
T Consensus        90 Dt~GlIiVWmlykgsW~EEMiN------nRnKSvV~SmsWn-~dG~kIcIvYeDGavIVGsvdGNRI-wgKeLkg~--~l  159 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSWCEEMIN------NRNKSVVVSMSWN-LDGTKICIVYEDGAVIVGSVDGNRI-WGKELKGQ--LL  159 (1189)
T ss_pred             CCCceEEEEeeecccHHHHHhh------CcCccEEEEEEEc-CCCcEEEEEEccCCEEEEeecccee-cchhcchh--ec
Confidence            9999999999875332222221      1256779999999 9999999999999998877765431 01122221  23


Q ss_pred             eeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC-------CceEEE----eecCCceEEEEEC--------CCCCcEE
Q psy17342        268 VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN-------KPVHSF----NEFRDYVMDVQWS--------PINPALF  328 (401)
Q Consensus       268 ~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~----~~~~~~v~~v~~~--------~~~~~~l  328 (401)
                      ..+.|+++      .+.++.+-..|.+.+||....       .+....    ......|..+.|.        |+.+ .|
T Consensus       160 ~hv~ws~D------~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~l  232 (1189)
T KOG2041|consen  160 AHVLWSED------LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RL  232 (1189)
T ss_pred             cceeeccc------HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EE
Confidence            46789998      577777777899999997532       111111    1122235556553        5777 78


Q ss_pred             EEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC
Q psy17342        329 ATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK  379 (401)
Q Consensus       329 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  379 (401)
                      +.+-..|.+.|..-.+......+    ...-.+..+.|+++|..||+++.+
T Consensus       233 avcy~nGr~QiMR~eND~~Pvv~----dtgm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  233 AVCYANGRMQIMRSENDPEPVVV----DTGMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             EEEEcCceehhhhhcCCCCCeEE----ecccEeecceecCCCcEEEEccCc
Confidence            88989999999766554332222    234668899999999999998764

>KOG2314|consensus

Probab=99.28  E-value=9.5e-09  Score=88.94  Aligned_cols=292  Identities=13%  Similarity=0.163  Sum_probs=174.7

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCC-CCcEEEEEeCcCCCCCceEEEe--cCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNE-PDGVCLIWNTKFKKTTPEFEFF--CQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~-~d~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      ..|.-+.|||+.++|++-++.+....... ....++|||+.+|.....+...  ....-.-..||.++ .++|.-.. ..
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~s  327 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDD-KYFARMTG-NS  327 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCC-ceeEEecc-ce
Confidence            45899999999999999886543322221 3368999999999887766552  12223346899877 67776543 57


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC-----CcEEEeeccCCCCCccccccccccccC
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND-----GRLCSWSLEMLSSPQETRDLQYNNKQT  217 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~  217 (401)
                      |.||+..+-...  ...+    -.-..|....|  +|.+..||.-...     ..+.+-.+.+.. ......+       
T Consensus       328 isIyEtpsf~ll--d~Ks----lki~gIr~Fsw--sP~~~llAYwtpe~~~~parvtL~evPs~~-~iRt~nl-------  391 (698)
T KOG2314|consen  328 ISIYETPSFMLL--DKKS----LKISGIRDFSW--SPTSNLLAYWTPETNNIPARVTLMEVPSKR-EIRTKNL-------  391 (698)
T ss_pred             EEEEecCceeee--cccc----cCCccccCccc--CCCcceEEEEcccccCCcceEEEEecCccc-eeeeccc-------
Confidence            999987663321  1111    22345777788  8887776654321     123333333211 1111111       


Q ss_pred             CccceEEEEeccCCCCeEEEEc----------CCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEE
Q psy17342        218 KNLAVLSLAFPQNDVNNFVVGC----------EDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLT  287 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~~~~----------~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s  287 (401)
                      +...=..+.|. .++.+|++-.          .-..+.++.++.... ++.... -...|...+|-|.      |+.+++
T Consensus       392 fnVsDckLhWQ-k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pve~ve-lke~vi~FaWEP~------gdkF~v  462 (698)
T KOG2314|consen  392 FNVSDCKLHWQ-KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PVEVVE-LKESVIAFAWEPH------GDKFAV  462 (698)
T ss_pred             eeeeccEEEec-cCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cceeee-cchheeeeeeccC------CCeEEE
Confidence            11111234455 5666666431          112344555553332 233332 4567889999998      666665


Q ss_pred             EeC---CCeEEEEEeeC----CCceEEEeecCCceEEEEECCCCCcEEEEE---ecCCEEEEEeCCCCCCCcceEEeecC
Q psy17342        288 SSY---DWSVKLWNIKE----NKPVHSFNEFRDYVMDVQWSPINPALFATV---EVAGRVDLWNLNLDTEVPATSAIVEG  357 (401)
Q Consensus       288 ~~~---d~~i~iwd~~~----~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~~~  357 (401)
                      -+.   ..++.+|-+++    .+.+.++..  ...+.+.|+|.|+ +++.+   |..|.+.++|+........-   ...
T Consensus       463 i~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~-fvvva~l~s~~g~l~F~D~~~a~~k~~~---~~e  536 (698)
T KOG2314|consen  463 ISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGR-FVVVAALVSRRGDLEFYDTDYADLKDTA---SPE  536 (698)
T ss_pred             EEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCc-EEEEEEecccccceEEEecchhhhhhcc---Ccc
Confidence            543   35789998873    234444543  5578899999998 44443   45789999998742221111   123


Q ss_pred             CCCeEEEEecCCCcEEEEEec------CCcEEEEEeccC
Q psy17342        358 APALSRVTWTPNGTQLCVGDE------KGAITMFDVGEV  390 (401)
Q Consensus       358 ~~~v~~~~~s~~g~~l~~~~~------dg~v~iw~~~~~  390 (401)
                      +...+.+.|.|.|+|++++++      |.--+||+++..
T Consensus       537 h~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr  575 (698)
T KOG2314|consen  537 HFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR  575 (698)
T ss_pred             ccccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence            455678999999999999875      445778887654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.27  E-value=1.5e-08  Score=80.97  Aligned_cols=250  Identities=14%  Similarity=0.087  Sum_probs=139.0

Q ss_pred             EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCC--CCceEEEe--cCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK--TTPEFEFF--CQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~--~~~~~~~~--~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      .++.+++|+.||+.-           |..|.|-..+..-  .+.+....  ....-..++||||+ .+||.+...|+|++
T Consensus         2 ~~~~~~~Gk~lAi~q-----------d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~v   69 (282)
T PF15492_consen    2 HLALSSDGKLLAILQ-----------DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRV   69 (282)
T ss_pred             ceeecCCCcEEEEEe-----------ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC-cEEEEEcCCCeEEE
Confidence            356788998877776           8888888776422  22222222  23456789999987 78999999999999


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEEEEEeecCC----ceEEEEEeCCCcEEEeeccCC--CCCccccccccccccCCc
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN----AHNLISISNDGRLCSWSLEML--SSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~~~dg~i~~wd~~~~--~~~~~~~~~~~~~~~~~~  219 (401)
                      +|+.......+.........-...|..+.|.....    ...|+.-..+|.++-|-+..+  ..-.....+..  .....
T Consensus        70 fdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf--~~~yp  147 (282)
T PF15492_consen   70 FDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSF--SSHYP  147 (282)
T ss_pred             EecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEe--cccCC
Confidence            99986543221111101122345677777753221    235667777888887776321  12222222221  22356


Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC------e
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW------S  293 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~------~  293 (401)
                      ..|.++.++ +..++|++|+....      +  ..  .  -++....+++-..-.+.  |.  -..++...|+      +
T Consensus       148 ~Gi~~~vy~-p~h~LLlVgG~~~~------~--~~--~--s~a~~~GLtaWRiL~~~--Py--yk~v~~~~~~~~~~~~~  210 (282)
T PF15492_consen  148 HGINSAVYH-PKHRLLLVGGCEQN------Q--DG--M--SKASSCGLTAWRILSDS--PY--YKQVTSSEDDITASSKR  210 (282)
T ss_pred             CceeEEEEc-CCCCEEEEeccCCC------C--Cc--c--ccccccCceEEEEcCCC--Cc--EEEccccCccccccccc
Confidence            789999999 66677776654322      0  00  0  00111112111111110  00  1111222121      1


Q ss_pred             EEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcce
Q psy17342        294 VKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPAT  351 (401)
Q Consensus       294 i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  351 (401)
                      -.+|.+-+.+...........|..|..||+|. +||+...+|.|.+|++.+-+.....
T Consensus       211 ~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  211 RGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             cceeeccceeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcchhhccc
Confidence            12333322222111122456899999999997 8999999999999999876655444

>KOG2314|consensus

Probab=99.26  E-value=9.7e-09  Score=88.87  Aligned_cols=281  Identities=11%  Similarity=0.208  Sum_probs=166.6

Q ss_pred             eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEec--------
Q psy17342         68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTY--------  139 (401)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~--------  139 (401)
                      =+-+.|||-|.+|++--           ..-|.+|--++-...+++  .| ..|.-+.|||.. ++|++=+.        
T Consensus       213 etyv~wSP~GTYL~t~H-----------k~GI~lWGG~~f~r~~RF--~H-p~Vq~idfSP~E-kYLVT~s~~p~~~~~~  277 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFH-----------KQGIALWGGESFDRIQRF--YH-PGVQFIDFSPNE-KYLVTYSPEPIIVEED  277 (698)
T ss_pred             eeeEEecCCceEEEEEe-----------ccceeeecCccHHHHHhc--cC-CCceeeecCCcc-ceEEEecCCccccCcc
Confidence            45689999999999887           567889986654444433  33 458889999965 78876432        


Q ss_pred             ---CCeEEEEECCCCCCCceeeccccccCCCCcEE-EEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccc
Q psy17342        140 ---SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVF-CMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNK  215 (401)
Q Consensus       140 ---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  215 (401)
                         ...++|||+.++........+    .....++ -..|  +.++.++|--.. ..|.+|+..... +....       
T Consensus       278 d~e~~~l~IWDI~tG~lkrsF~~~----~~~~~~WP~frW--S~DdKy~Arm~~-~sisIyEtpsf~-lld~K-------  342 (698)
T KOG2314|consen  278 DNEGQQLIIWDIATGLLKRSFPVI----KSPYLKWPIFRW--SHDDKYFARMTG-NSISIYETPSFM-LLDKK-------  342 (698)
T ss_pred             cCCCceEEEEEccccchhcceecc----CCCccccceEEe--ccCCceeEEecc-ceEEEEecCcee-eeccc-------
Confidence               246999999999876433221    1222222 3456  889999887776 478899876422 11111       


Q ss_pred             cCCccceEEEEeccCCCCeEEEEcCC-----ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEE--
Q psy17342        216 QTKNLAVLSLAFPQNDVNNFVVGCED-----GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS--  288 (401)
Q Consensus       216 ~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~--  288 (401)
                      .-.-..|....|+ |.++.||-=+..     ..+.+..+.  +.+.+++-.-|.-.=..+.|..+      +.+|+.-  
T Consensus       343 slki~gIr~Fsws-P~~~llAYwtpe~~~~parvtL~evP--s~~~iRt~nlfnVsDckLhWQk~------gdyLcvkvd  413 (698)
T KOG2314|consen  343 SLKISGIRDFSWS-PTSNLLAYWTPETNNIPARVTLMEVP--SKREIRTKNLFNVSDCKLHWQKS------GDYLCVKVD  413 (698)
T ss_pred             ccCCccccCcccC-CCcceEEEEcccccCCcceEEEEecC--ccceeeeccceeeeccEEEeccC------CcEEEEEEE
Confidence            1134578889999 566655532211     112222222  11122222222211123444444      5666532  


Q ss_pred             --------eCCCeEEEEEeeCCC-ceEEEeecCCceEEEEECCCCCcEEEEEecC--CEEEEEeCCCCCCCcceEEeecC
Q psy17342        289 --------SYDWSVKLWNIKENK-PVHSFNEFRDYVMDVQWSPINPALFATVEVA--GRVDLWNLNLDTEVPATSAIVEG  357 (401)
Q Consensus       289 --------~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~  357 (401)
                              +.-..+-|+.++... ++....- ...|...+|-|.|..+.+..+.+  .++.+|.+++....+.+-.... 
T Consensus       414 R~tK~~~~g~f~n~eIfrireKdIpve~vel-ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-  491 (698)
T KOG2314|consen  414 RHTKSKVKGQFSNLEIFRIREKDIPVEVVEL-KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-  491 (698)
T ss_pred             eeccccccceEeeEEEEEeeccCCCceeeec-chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc-
Confidence                    222346677776543 3333433 67899999999998544433333  5788998884322222211122 


Q ss_pred             CCCeEEEEecCCCcEEEEE---ecCCcEEEEEecc
Q psy17342        358 APALSRVTWTPNGTQLCVG---DEKGAITMFDVGE  389 (401)
Q Consensus       358 ~~~v~~~~~s~~g~~l~~~---~~dg~v~iw~~~~  389 (401)
                      ....+.+.|+|.|++++++   +..|.+.++|...
T Consensus       492 k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  492 KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             ccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence            2457789999999999876   4568899999874

>KOG4532|consensus

Probab=99.23  E-value=3.1e-09  Score=83.60  Aligned_cols=243  Identities=9%  Similarity=-0.060  Sum_probs=155.5

Q ss_pred             EEEecCC-----CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342         70 YMDWSTQ-----HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIV  144 (401)
Q Consensus        70 ~~~~~~~-----~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~  144 (401)
                      .+.|-|-     ..+|+.++          ..|...+|.+.+.+......-.+...|+-+.=.-+...-+..++.|.+++
T Consensus        72 g~~F~p~s~~~kc~~la~gG----------~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k  141 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGG----------ASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGK  141 (344)
T ss_pred             cccccchHhhccccEEEecc----------ccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCccee
Confidence            3556652     33577776          78999999998755443332223333332221112223455567899999


Q ss_pred             EEECCCCCCCceeeccccccCCCCc--EEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        145 LWDTRVQKKTPVHRTPLSVMAHTHP--VFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       145 iw~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      +.+++.+...        ...|...  +.++++  ++++.++++.+....|-+|.+...+........     ......-
T Consensus       142 ~~~~~~~s~~--------~~~h~~~~~~ns~~~--snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~-----a~t~D~g  206 (344)
T KOG4532|consen  142 TMVVSGDSNK--------FAVHNQNLTQNSLHY--SNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE-----APTSDHG  206 (344)
T ss_pred             EEEEecCccc--------ceeeccccceeeeEE--cCCCceEEEecCCCcceEEEeCCccceeeeeEe-----cccCCCc
Confidence            9988766543        2344443  778888  999999999999999999999864433332222     2245556


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCc---eeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGN---VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      .+.+|+ .....+|+++.||.+.+||.+......   ..+-..|.+.+..+.|+|...    -.+|...-.-+.+.+-|+
T Consensus       207 F~~S~s-~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~----lDLLf~sEhfs~~hv~D~  281 (344)
T KOG4532|consen  207 FYNSFS-ENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL----LDLLFISEHFSRVHVVDT  281 (344)
T ss_pred             eeeeec-cCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc----ceEEEEecCcceEEEEEc
Confidence            778898 788999999999999999998643221   123345899999999998521    245554444678999999


Q ss_pred             eCCCceEEEee-------cC-CceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        300 KENKPVHSFNE-------FR-DYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       300 ~~~~~~~~~~~-------~~-~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      ++.+..+.+..       |. ..|..-.|+.++... .+.+++ .+.-|++.+
T Consensus       282 R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~-~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  282 RNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESN-DVKNEL-QGAEYNILS  332 (344)
T ss_pred             ccCceeeEEecCccccccccccccccccccCCCccc-ccccch-hhheeeccc
Confidence            99876555433       22 236777777776533 333322 344455543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.22  E-value=1.7e-08  Score=99.87  Aligned_cols=258  Identities=10%  Similarity=0.051  Sum_probs=155.9

Q ss_pred             eEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccc-c------ccCCCCcEEEEEEeecCCceEEEEE-eCCCcE
Q psy17342        122 LSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPL-S------VMAHTHPVFCMSVIGTQNAHNLISI-SNDGRL  193 (401)
Q Consensus       122 ~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~-~------~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i  193 (401)
                      ..+++.+.+..++++-+.++.|.++|.............. -      ....-.....+++  .++++.|+.+ ...+.|
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIav--d~~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAY--NAKKNLLYVADTENHAL  648 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEE--eCCCCEEEEEeCCCceE
Confidence            4678887655678887888999999986542111100000 0      0011223467888  6777655554 445678


Q ss_pred             EEeeccCCCCCccccccccc---cccC-------CccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCC
Q psy17342        194 CSWSLEMLSSPQETRDLQYN---NKQT-------KNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGH  263 (401)
Q Consensus       194 ~~wd~~~~~~~~~~~~~~~~---~~~~-------~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~  263 (401)
                      +.+|+....  ...+.....   ...+       .-.....++++|.++..+++.+.++.|++|+.....   +..+.+.
T Consensus       649 r~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~---v~~~~G~  723 (1057)
T PLN02919        649 REIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV---TRVFSGD  723 (1057)
T ss_pred             EEEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe---EEEEecC
Confidence            888875411  111100000   0000       012346789994466777777888999999986432   2222111


Q ss_pred             ---------------CCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEE-------------eec----
Q psy17342        264 ---------------EGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSF-------------NEF----  311 (401)
Q Consensus       264 ---------------~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------------~~~----  311 (401)
                                     -.....|+++|+.     ..++++-+.++.|++||+.++......             ...    
T Consensus       724 G~~~~~~g~~~~~~~~~~P~GIavspdG-----~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g  798 (1057)
T PLN02919        724 GYERNLNGSSGTSTSFAQPSGISLSPDL-----KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG  798 (1057)
T ss_pred             CccccCCCCccccccccCccEEEEeCCC-----CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence                           1234568888873     236666677899999999865422111             000    


Q ss_pred             ----CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe----------ecCCCCeEEEEecCCCcEEEEEe
Q psy17342        312 ----RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAI----------VEGAPALSRVTWTPNGTQLCVGD  377 (401)
Q Consensus       312 ----~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------~~~~~~v~~~~~s~~g~~l~~~~  377 (401)
                          -....+++++++|. ++++-..++.|++||..++........-          ...-.....++++++|+.+++-+
T Consensus       799 ~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt  877 (1057)
T PLN02919        799 SEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT  877 (1057)
T ss_pred             hhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC
Confidence                11245899999997 7888888999999999875432211100          00112467899999999888888


Q ss_pred             cCCcEEEEEeccCcc
Q psy17342        378 EKGAITMFDVGEVGI  392 (401)
Q Consensus       378 ~dg~v~iw~~~~~~~  392 (401)
                      .++.|++||+.+++.
T Consensus       878 ~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        878 NNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCCEEEEEECCCCcc
Confidence            999999999998754

>KOG0309|consensus

Probab=99.22  E-value=1.9e-10  Score=102.49  Aligned_cols=235  Identities=12%  Similarity=0.130  Sum_probs=169.1

Q ss_pred             EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCC--CCcEEEEEEeecCCceEEEEEeCCCc
Q psy17342        115 FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH--THPVFCMSVIGTQNAHNLISISNDGR  192 (401)
Q Consensus       115 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~~~dg~  192 (401)
                      +.-.+++.++..+|.| +-++.++.-| +.+-|+...-..+..      ..|  .-.|-.+.|.+++...+-++......
T Consensus        21 l~v~~~~~a~si~p~g-rdi~lAsr~g-l~i~dld~p~~ppr~------l~h~tpw~vad~qws~h~a~~~wiVsts~qk   92 (1081)
T KOG0309|consen   21 LKVDGGFNAVSINPSG-RDIVLASRQG-LYIIDLDDPFTPPRW------LHHITPWQVADVQWSPHPAKPYWIVSTSNQK   92 (1081)
T ss_pred             EEecCcccceeecccc-chhhhhhhcC-eEEEeccCCCCCcee------eeccCcchhcceecccCCCCceeEEecCcch
Confidence            3446788899999977 4555565555 677788765443221      122  22456777866666677777667777


Q ss_pred             EEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeec
Q psy17342        193 LCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSS  272 (401)
Q Consensus       193 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~  272 (401)
                      -.+|++.........+.     +.+|...|+.+.|+|.....+++++.|-.+..||++.... ++..+..-...-..++|
T Consensus        93 aiiwnlA~ss~~aIef~-----lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~-p~ys~~~w~s~asqVkw  166 (1081)
T KOG0309|consen   93 AIIWNLAKSSSNAIEFV-----LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR-PFYSTSSWRSAASQVKW  166 (1081)
T ss_pred             hhhhhhhcCCccceEEE-----EecCccceeccccCCCCCcceeeccccccceeeeccCCCc-ceeeeecccccCceeee
Confidence            88999875433333333     3459999999999988899999999999999999986443 44454444455678899


Q ss_pred             CccCCCCCCCcEEEEEeCCCeEEEEEeeC-CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcce
Q psy17342        273 HRAQGHIDFSHLYLTSSYDWSVKLWNIKE-NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPAT  351 (401)
Q Consensus       273 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  351 (401)
                      +-..     +..+|+ +..+.|++||.+. +.++..+++|-..|+.++|..-....+.+++.|++|+.||..........
T Consensus       167 nyk~-----p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~  240 (1081)
T KOG0309|consen  167 NYKD-----PNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR  240 (1081)
T ss_pred             cccC-----cchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce
Confidence            8764     455554 5577899999987 46888999999999999998866557889999999999999876554443


Q ss_pred             EEeecCCCCeEEEEecCCCc
Q psy17342        352 SAIVEGAPALSRVTWTPNGT  371 (401)
Q Consensus       352 ~~~~~~~~~v~~~~~s~~g~  371 (401)
                      .  .....+|+.-++-|-|.
T Consensus       241 ~--vtt~~piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  241 T--VTTNFPIWRGRYLPFGE  258 (1081)
T ss_pred             e--ccccCcceeccccccCc
Confidence            3  34466788888888654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.21  E-value=1.6e-07  Score=91.36  Aligned_cols=292  Identities=14%  Similarity=0.156  Sum_probs=178.2

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCce-EEE------ecCCCeeEEEEeCCCCceEEEEe
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE-FEF------FCQSPVLSCCFAKFNPYLILGGT  138 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~-~~~------~~~~~v~~~~~~~~~~~~l~~g~  138 (401)
                      ..+...+|.+....+.++.-.      ...+..|.+-.......... ..+      ...+.|.++.|.++. .-++.+.
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~------~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~-~~l~~~~   94 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGP------NEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADS-ESLCIAL   94 (928)
T ss_pred             cccceEEEecCCCeEEEEECC------CCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCC-CcEEEEE
Confidence            457777888777666555510      00112344443332221111 111      124689999999976 5666677


Q ss_pred             cCCeEEEE----ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccC------------CC
Q psy17342        139 YSGQIVLW----DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEM------------LS  202 (401)
Q Consensus       139 ~dg~v~iw----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~------------~~  202 (401)
                      .+|.|.+.    +........       ...-...|.+++|  +||+..|+..+.++++.+..-.-            .+
T Consensus        95 ~~Gdi~~~~~~~~~~~~~~E~-------VG~vd~GI~a~~W--SPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~  165 (928)
T PF04762_consen   95 ASGDIILVREDPDPDEDEIEI-------VGSVDSGILAASW--SPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFG  165 (928)
T ss_pred             CCceEEEEEccCCCCCceeEE-------EEEEcCcEEEEEE--CCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccC
Confidence            89999999    444433221       1345678999999  99999999999999988754210            00


Q ss_pred             C--------Cccccccccc--------------------cccCCccceEEEEeccCCCCeEEEEcC---C---ceEEEEe
Q psy17342        203 S--------PQETRDLQYN--------------------NKQTKNLAVLSLAFPQNDVNNFVVGCE---D---GNVYSAC  248 (401)
Q Consensus       203 ~--------~~~~~~~~~~--------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~---d---~~i~~~~  248 (401)
                      .        ..+..++...                    ... ....-..++|- .||.++|+.+.   .   ..+++|+
T Consensus       166 ~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWR-GDG~yFAVss~~~~~~~~R~iRVy~  243 (928)
T PF04762_consen  166 ESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWR-GDGEYFAVSSVEPETGSRRVIRVYS  243 (928)
T ss_pred             CCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEEC-CCCcEEEEEEEEcCCCceeEEEEEC
Confidence            0        0000010000                    001 23355678899 99999998864   3   4689998


Q ss_pred             CCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC---CCeEEEEEeeCCCceEEEee----cCCceEEEEEC
Q psy17342        249 RHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY---DWSVKLWNIKENKPVHSFNE----FRDYVMDVQWS  321 (401)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~----~~~~v~~v~~~  321 (401)
                      .++.   ...+-+.-.+--.+++|.|.      |+++|+.-.   ...|.+|. ++|.....|..    ....|..+.|+
T Consensus       244 ReG~---L~stSE~v~gLe~~l~WrPs------G~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn  313 (928)
T PF04762_consen  244 REGE---LQSTSEPVDGLEGALSWRPS------GNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWN  313 (928)
T ss_pred             CCce---EEeccccCCCccCCccCCCC------CCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEEC
Confidence            8642   22222222333457899999      899988764   34566666 44554444443    35679999999


Q ss_pred             CCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC-cEEEEEecCCcEEEEEe
Q psy17342        322 PINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG-TQLCVGDEKGAITMFDV  387 (401)
Q Consensus       322 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~iw~~  387 (401)
                      +++. +||..-.|. |.+|-..+..-.-...........+..+.|+|.. ..|...+.+|.+..++.
T Consensus       314 ~ds~-iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  314 SDSE-ILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             CCCC-EEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            9997 788876554 9999988765332222333344456669999964 55777777677766554

>KOG0882|consensus

Probab=99.20  E-value=7.6e-10  Score=93.11  Aligned_cols=260  Identities=12%  Similarity=0.177  Sum_probs=178.5

Q ss_pred             EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-CCcE
Q psy17342        115 FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-DGRL  193 (401)
Q Consensus       115 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i  193 (401)
                      +-|...|+.+....  .+++.+++.||.++.|.-..-.....   ...+..|...|.+++.  +.++-++.+.+. |..+
T Consensus         6 ymhrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEf---VKhFraHL~~I~sl~~--S~dg~L~~Sv~d~Dhs~   78 (558)
T KOG0882|consen    6 YMHRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEF---VKHFRAHLGVILSLAV--SYDGWLFRSVEDPDHSV   78 (558)
T ss_pred             hcccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceee---hhhhHHHHHHHHhhhc--cccceeEeeccCcccce
Confidence            34677777776554  36999999999999997654221111   1335678889999988  889999999887 9999


Q ss_pred             EEeeccCCCCCccccccccccccCCccceEEEEeccCCCC-eEE-EEcCCceEEEEeCCCCCCCceeeecCCCCceeeee
Q psy17342        194 CSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVN-NFV-VGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLS  271 (401)
Q Consensus       194 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~-~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~  271 (401)
                      +++|+..... ...+++..     -...+ +...+|.+.. .++ +.-.++.+.++|-.....+....-.-|..+|..+.
T Consensus        79 KvfDvEn~Dm-inmiKL~~-----lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~  151 (558)
T KOG0882|consen   79 KVFDVENFDM-INMIKLVD-----LPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIR  151 (558)
T ss_pred             eEEEeeccch-hhhccccc-----CCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEE
Confidence            9999975322 11222222     11112 2222212211 333 34567889999987665555555567999999999


Q ss_pred             cCccCCCCCCCcEEEEEeCCCeEEEEEeeC------CCceE---------EEeecCCceEEEEECCCCCcEEEEEecCCE
Q psy17342        272 SHRAQGHIDFSHLYLTSSYDWSVKLWNIKE------NKPVH---------SFNEFRDYVMDVQWSPINPALFATVEVAGR  336 (401)
Q Consensus       272 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~~---------~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~  336 (401)
                      +.|.      +..+++....|.|.-|....      .+...         .+........++.|+|++. .+.+-+.|..
T Consensus       152 y~qa------~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~Drk  224 (558)
T KOG0882|consen  152 YNQA------GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRK  224 (558)
T ss_pred             eecc------ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC-cccccCcccE
Confidence            9998      78899998899999998762      11111         1222345678999999997 6888889999


Q ss_pred             EEEEeCCCCCCCcceEEeec------------------------------CCCCeEEEEecCCCcEEEEEecCCcEEEEE
Q psy17342        337 VDLWNLNLDTEVPATSAIVE------------------------------GAPALSRVTWTPNGTQLCVGDEKGAITMFD  386 (401)
Q Consensus       337 i~iwd~~~~~~~~~~~~~~~------------------------------~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~  386 (401)
                      |+++++++++.++.+.....                              ....-+.+.|...|++|+-|+-=| |++.+
T Consensus       225 VR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin  303 (558)
T KOG0882|consen  225 VRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVIN  303 (558)
T ss_pred             EEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEE
Confidence            99999998876543321100                              112345688999999999999887 99999


Q ss_pred             eccCccceeeee
Q psy17342        387 VGEVGIACLKFI  398 (401)
Q Consensus       387 ~~~~~~~~l~~~  398 (401)
                      +.++  .+.+++
T Consensus       304 ~~tn--~v~ri~  313 (558)
T KOG0882|consen  304 LDTN--TVVRIL  313 (558)
T ss_pred             eecC--eEEEEe
Confidence            9998  455554

>KOG4190|consensus

Probab=99.19  E-value=3.5e-10  Score=97.69  Aligned_cols=292  Identities=14%  Similarity=0.177  Sum_probs=179.6

Q ss_pred             cccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCC-----CCCceEEEe-cCCCeeEEEEeCCCCce
Q psy17342         60 EKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK-----KTTPEFEFF-CQSPVLSCCFAKFNPYL  133 (401)
Q Consensus        60 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~-----~~~~~~~~~-~~~~v~~~~~~~~~~~~  133 (401)
                      .-.+|...|..++--.+.+.+++++          .|.+|++|.++..     .....+.+. |..+|.++.|..+. +.
T Consensus       730 nf~GH~~~iRai~AidNENSFiSAS----------kDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~  798 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISAS----------KDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RS  798 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeecc----------CCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ce
Confidence            3335778888877666777888888          8999999999752     112233333 78899999998855 56


Q ss_pred             EEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEE-eCCCcEEEeeccCCCCCcccccccc
Q psy17342        134 ILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISI-SNDGRLCSWSLEMLSSPQETRDLQY  212 (401)
Q Consensus       134 l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~  212 (401)
                      ++++  ||.|.+||.--++....... ....+..+.|.++.   +-+...++.+ +...+|+++|.+..+   .+.++..
T Consensus       799 i~Sc--D~giHlWDPFigr~Laq~~d-apk~~a~~~ikcl~---nv~~~iliAgcsaeSTVKl~DaRsce---~~~E~kV  869 (1034)
T KOG4190|consen  799 IASC--DGGIHLWDPFIGRLLAQMED-APKEGAGGNIKCLE---NVDRHILIAGCSAESTVKLFDARSCE---WTCELKV  869 (1034)
T ss_pred             eeec--cCcceeecccccchhHhhhc-CcccCCCceeEecc---cCcchheeeeccchhhheeeeccccc---ceeeEEe
Confidence            6654  89999999876654321100 00122233444432   4455555554 778899999988632   2222222


Q ss_pred             ccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC
Q psy17342        213 NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW  292 (401)
Q Consensus       213 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~  292 (401)
                      .+..+...-+.+++.. +.++.++++-.+|.|.+.|.++.  ..+..++.-.-....++- |.      .+.++....|.
T Consensus       870 cna~~Pna~~R~iaVa-~~GN~lAa~LSnGci~~LDaR~G--~vINswrpmecdllqlaa-ps------dq~L~~saldH  939 (1034)
T KOG4190|consen  870 CNAPGPNALTRAIAVA-DKGNKLAAALSNGCIAILDARNG--KVINSWRPMECDLLQLAA-PS------DQALAQSALDH  939 (1034)
T ss_pred             ccCCCCchheeEEEec-cCcchhhHHhcCCcEEEEecCCC--ceeccCCcccchhhhhcC-ch------hHHHHhhcccc
Confidence            1134456678899999 89999999999999999998844  345555544433334433 33      36777777899


Q ss_pred             eEEE-EEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC-CCcceEE--eecCCCCeEEEEecC
Q psy17342        293 SVKL-WNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT-EVPATSA--IVEGAPALSRVTWTP  368 (401)
Q Consensus       293 ~i~i-wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~--~~~~~~~v~~~~~s~  368 (401)
                      ++.+ |-.-.+....+.+....+..-  ...-|+ -+++....+.+.+|.-.... ...++..  .....+..++++--|
T Consensus       940 slaVnWhaldgimh~q~kpppepahf--lqsvgp-SLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LP 1016 (1034)
T KOG4190|consen  940 SLAVNWHALDGIMHLQDKPPPEPAHF--LQSVGP-SLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLP 1016 (1034)
T ss_pred             eeEeeehhcCCeeeeccCCCCcchhh--hhccCc-eeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeecc
Confidence            9998 887666555544433322211  122354 35666666778887432111 0111110  112245577788778


Q ss_pred             CCcEEEEEecCCcEEE
Q psy17342        369 NGTQLCVGDEKGAITM  384 (401)
Q Consensus       369 ~g~~l~~~~~dg~v~i  384 (401)
                      -..-+..|...|.|.+
T Consensus      1017 LN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1017 LNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             ccchhhccCCCCceee
Confidence            7777777888888765

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.16  E-value=1.4e-07  Score=75.48  Aligned_cols=241  Identities=10%  Similarity=0.018  Sum_probs=132.4

Q ss_pred             EEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCC
Q psy17342        124 CCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSS  203 (401)
Q Consensus       124 ~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~  203 (401)
                      ++.+++| ++||.- .|..|.|-..++.-...+.+..+ -+.....-+.++|  +|++..||.+...|+|+++|+...  
T Consensus         3 ~~~~~~G-k~lAi~-qd~~iEiRsa~Ddf~si~~kcqV-pkD~~PQWRkl~W--SpD~tlLa~a~S~G~i~vfdl~g~--   75 (282)
T PF15492_consen    3 LALSSDG-KLLAIL-QDQCIEIRSAKDDFSSIIGKCQV-PKDPNPQWRKLAW--SPDCTLLAYAESTGTIRVFDLMGS--   75 (282)
T ss_pred             eeecCCC-cEEEEE-eccEEEEEeccCCchheeEEEec-CCCCCchheEEEE--CCCCcEEEEEcCCCeEEEEecccc--
Confidence            4556666 666664 68888887776554332222211 1233345578999  999999999999999999998631  


Q ss_pred             CccccccccccccCCccceEEEEeccCC-----CCeEEEEcCCceEEEEeCCC---CCCCceeeec--C-CCCceeeeec
Q psy17342        204 PQETRDLQYNNKQTKNLAVLSLAFPQND-----VNNFVVGCEDGNVYSACRHG---NKAGNVECYE--G-HEGPVVGLSS  272 (401)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~d~~i~~~~~~~---~~~~~~~~~~--~-~~~~v~~i~~  272 (401)
                      ....+.........-...|..+.|.+..     ...|++-..+|.++-|-+..   ........+.  . +...|.++.+
T Consensus        76 ~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy  155 (282)
T PF15492_consen   76 ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY  155 (282)
T ss_pred             eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE
Confidence            1111111100011134567777776332     23566677778877665421   2222233332  2 4678999999


Q ss_pred             CccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEE-EEecCC------EEEEEeCCCC
Q psy17342        273 HRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFA-TVEVAG------RVDLWNLNLD  345 (401)
Q Consensus       273 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~-~~~~d~------~i~iwd~~~~  345 (401)
                      +|.      .++|+.|+....      +.+.    -+.....+++=..-.+.+++.- +...|+      +..+|.+-+.
T Consensus       156 ~p~------h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~  219 (282)
T PF15492_consen  156 HPK------HRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF  219 (282)
T ss_pred             cCC------CCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce
Confidence            998      467776664322      0000    0011122222222222221111 111111      1123332221


Q ss_pred             CCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        346 TEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       346 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      +   .+.........|..|..||||..||+...+|.|.+|++.+-
T Consensus       220 ~---~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  220 K---FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             e---eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence            1   11111223567999999999999999999999999999875

>KOG3914|consensus

Probab=99.15  E-value=9.4e-10  Score=91.26  Aligned_cols=163  Identities=10%  Similarity=0.047  Sum_probs=108.6

Q ss_pred             EEeccCCCCeEEEEcCCceEEEEeCCCCCC--CceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC
Q psy17342        225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKA--GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN  302 (401)
Q Consensus       225 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  302 (401)
                      +..+ +++++++++..+....+++...+..  +++..+... ..-+++.+......   .......+....+.+|....+
T Consensus        68 ~~~s-~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~~~~s---v~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   68 VLTS-DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIREDTS---VLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccC-CCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeeeccce---EEEEeecCCceeeeeeccccc
Confidence            3444 7888999998888877777664432  222222211 11223333332100   122233344556666666554


Q ss_pred             CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcE
Q psy17342        303 KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAI  382 (401)
Q Consensus       303 ~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  382 (401)
                      ++ ..+-+|-..++.|+|+||++ +++++..|..|++-.......+..+.  .+|..-|..++.-++. .|++|+.|++|
T Consensus       143 ~~-~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~Iesfc--lGH~eFVS~isl~~~~-~LlS~sGD~tl  217 (390)
T KOG3914|consen  143 RC-EPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFC--LGHKEFVSTISLTDNY-LLLSGSGDKTL  217 (390)
T ss_pred             Cc-chhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhc--cccHhheeeeeeccCc-eeeecCCCCcE
Confidence            43 34567899999999999997 89999999999998876554444433  5888999999987654 48999999999


Q ss_pred             EEEEeccCccceeeeee
Q psy17342        383 TMFDVGEVGIACLKFIT  399 (401)
Q Consensus       383 ~iw~~~~~~~~~l~~~~  399 (401)
                      ++||+.++  ++|.+++
T Consensus       218 r~Wd~~sg--k~L~t~d  232 (390)
T KOG3914|consen  218 RLWDITSG--KLLDTCD  232 (390)
T ss_pred             EEEecccC--Ccccccc
Confidence            99999999  5666654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.14  E-value=7.3e-08  Score=85.86  Aligned_cols=271  Identities=11%  Similarity=0.064  Sum_probs=145.1

Q ss_pred             CCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCc
Q psy17342         76 QHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTP  155 (401)
Q Consensus        76 ~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~  155 (401)
                      ++..+++++          .++.+..+|.++++..-+...  ...+.+.-... + ..++.++.+|.|..||.++++...
T Consensus       104 ~~~~v~v~~----------~~g~l~ald~~tG~~~W~~~~--~~~~~~~p~v~-~-~~v~v~~~~g~l~a~d~~tG~~~W  169 (377)
T TIGR03300       104 DGGLVFVGT----------EKGEVIALDAEDGKELWRAKL--SSEVLSPPLVA-N-GLVVVRTNDGRLTALDAATGERLW  169 (377)
T ss_pred             cCCEEEEEc----------CCCEEEEEECCCCcEeeeecc--CceeecCCEEE-C-CEEEEECCCCeEEEEEcCCCceee
Confidence            355677666          689999999988876544332  22222211111 3 355666779999999998887543


Q ss_pred             eeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEecc-CCCCe
Q psy17342        156 VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQ-NDVNN  234 (401)
Q Consensus       156 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~  234 (401)
                      .............. .+...    .+..++.+..+|.+..+|.+++.. ....................+.-+| -.+..
T Consensus       170 ~~~~~~~~~~~~~~-~sp~~----~~~~v~~~~~~g~v~ald~~tG~~-~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~  243 (377)
T TIGR03300       170 TYSRVTPALTLRGS-ASPVI----ADGGVLVGFAGGKLVALDLQTGQP-LWEQRVALPKGRTELERLVDVDGDPVVDGGQ  243 (377)
T ss_pred             EEccCCCceeecCC-CCCEE----ECCEEEEECCCCEEEEEEccCCCE-eeeeccccCCCCCchhhhhccCCccEEECCE
Confidence            22110000000000 01111    123677778888898888865321 1111110000000000000010010 12457


Q ss_pred             EEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCC-
Q psy17342        235 FVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRD-  313 (401)
Q Consensus       235 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-  313 (401)
                      +++++.+|.++.+|..+.+  .+-... . ........  .      +..++.++.||.+..+|..+++.+........ 
T Consensus       244 vy~~~~~g~l~a~d~~tG~--~~W~~~-~-~~~~~p~~--~------~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~  311 (377)
T TIGR03300       244 VYAVSYQGRVAALDLRSGR--VLWKRD-A-SSYQGPAV--D------DNRLYVTDADGVVVALDRRSGSELWKNDELKYR  311 (377)
T ss_pred             EEEEEcCCEEEEEECCCCc--EEEeec-c-CCccCceE--e------CCEEEEECCCCeEEEEECCCCcEEEccccccCC
Confidence            7888889999999987432  332222 1 11111111  1      46677778899999999999987766532111 


Q ss_pred             ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEE
Q psy17342        314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMF  385 (401)
Q Consensus       314 ~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw  385 (401)
                      ...+...  .+. .+++++.+|.|+++|..+++.+..+..  ..........+. + ..|+.++.||.|+.|
T Consensus       312 ~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG~~~~~~~~--~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       312 QLTAPAV--VGG-YLVVGDFEGYLHWLSREDGSFVARLKT--DGSGIASPPVVV-G-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             ccccCEE--ECC-EEEEEeCCCEEEEEECCCCCEEEEEEc--CCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence            1222222  243 577888999999999998886655432  211111222222 3 458889999988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.14  E-value=9.8e-08  Score=94.56  Aligned_cols=258  Identities=8%  Similarity=0.064  Sum_probs=153.1

Q ss_pred             EEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE-e------------cCCCeeEEEEeCCCCceEE
Q psy17342         69 TYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF-F------------CQSPVLSCCFAKFNPYLIL  135 (401)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~------------~~~~v~~~~~~~~~~~~l~  135 (401)
                      ..+++++.+..|..+..         ..+.|.++|... ..+..+.. +            .-.....+++.+++..+.+
T Consensus       571 ~gvavd~~~g~lyVaDs---------~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYV  640 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDS---------NHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYV  640 (1057)
T ss_pred             ceEEEECCCCeEEEEEC---------CCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEE
Confidence            45788876555555552         688999999863 32211111 0            0123578899987644445


Q ss_pred             EEecCCeEEEEECCCCCCCceeecc---ccccCC-------CCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCC
Q psy17342        136 GGTYSGQIVLWDTRVQKKTPVHRTP---LSVMAH-------THPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSP  204 (401)
Q Consensus       136 ~g~~dg~v~iw~~~~~~~~~~~~~~---~~~~~~-------~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~  204 (401)
                      +-..++.|+++|..++........-   ....+.       -..-+.+++  ++ ++..+++.+.++.|++||.......
T Consensus       641 aDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~--dp~~g~LyVad~~~~~I~v~d~~~g~v~  718 (1057)
T PLN02919        641 ADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCF--EPVNEKVYIAMAGQHQIWEYNISDGVTR  718 (1057)
T ss_pred             EeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEE--ecCCCeEEEEECCCCeEEEEECCCCeEE
Confidence            5455678999998765432111000   000000       112357888  77 5667777788899999998642110


Q ss_pred             cc-----cccccc-ccccCCccceEEEEeccCCCC-eEEEEcCCceEEEEeCCCCCCCce-----------eeecCC---
Q psy17342        205 QE-----TRDLQY-NNKQTKNLAVLSLAFPQNDVN-NFVVGCEDGNVYSACRHGNKAGNV-----------ECYEGH---  263 (401)
Q Consensus       205 ~~-----~~~~~~-~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~-----------~~~~~~---  263 (401)
                      ..     ...... ......-.....++++ +++. ++++-+.++.|++||+.......+           ..+..+   
T Consensus       719 ~~~G~G~~~~~~g~~~~~~~~~~P~GIavs-pdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~  797 (1057)
T PLN02919        719 VFSGDGYERNLNGSSGTSTSFAQPSGISLS-PDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGV  797 (1057)
T ss_pred             EEecCCccccCCCCccccccccCccEEEEe-CCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCc
Confidence            00     000000 0000112345679999 6766 556667789999999874321100           001000   


Q ss_pred             -----CCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee--------------cCCceEEEEECCCC
Q psy17342        264 -----EGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE--------------FRDYVMDVQWSPIN  324 (401)
Q Consensus       264 -----~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------------~~~~v~~v~~~~~~  324 (401)
                           -....+++++++      +.++++-+.+++|++||..++.... +.+              .-.....++++++|
T Consensus       798 g~~~~l~~P~Gvavd~d------G~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG  870 (1057)
T PLN02919        798 GSEVLLQHPLGVLCAKD------GQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGENG  870 (1057)
T ss_pred             hhhhhccCCceeeEeCC------CcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeCCC
Confidence                 112357788887      6888888889999999997765432 222              11246789999999


Q ss_pred             CcEEEEEecCCEEEEEeCCCCCC
Q psy17342        325 PALFATVEVAGRVDLWNLNLDTE  347 (401)
Q Consensus       325 ~~~l~~~~~d~~i~iwd~~~~~~  347 (401)
                      + ++++-+.++.|++||+.+++.
T Consensus       871 ~-lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        871 R-LFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             C-EEEEECCCCEEEEEECCCCcc
Confidence            7 888888899999999988654

>KOG3914|consensus

Probab=99.12  E-value=1.5e-09  Score=90.08  Aligned_cols=160  Identities=12%  Similarity=0.188  Sum_probs=108.3

Q ss_pred             cCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCce
Q psy17342        178 TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNV  257 (401)
Q Consensus       178 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  257 (401)
                      ++++.+++.+..+....++++....+........     .-....+++.+. .+.....++..-|.++-+|.-.......
T Consensus        71 s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-----~v~~~~~ai~~~-~~~~sv~v~dkagD~~~~di~s~~~~~~  144 (390)
T KOG3914|consen   71 SDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-----CVPKRPTAISFI-REDTSVLVADKAGDVYSFDILSADSGRC  144 (390)
T ss_pred             CCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-----ecccCcceeeee-eccceEEEEeecCCceeeeeecccccCc
Confidence            6778888888888777777776422211111111     112223344444 3444555554444444444332111234


Q ss_pred             eeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEe-ecCCceEEEEECCCCCcEEEEEecCCE
Q psy17342        258 ECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN-EFRDYVMDVQWSPINPALFATVEVAGR  336 (401)
Q Consensus       258 ~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~~~~~d~~  336 (401)
                      ..+-||-..++.++++|+      +++++++..|..||+-.+...-.+..|. +|...|..++.-++.  .|+++|.|++
T Consensus       145 ~~~lGhvSml~dVavS~D------~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~t  216 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVSPD------DQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKT  216 (390)
T ss_pred             chhhhhhhhhheeeecCC------CCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecCCCCc
Confidence            456689999999999999      7999999999999998877655565554 599999999999875  5899999999


Q ss_pred             EEEEeCCCCCCCcce
Q psy17342        337 VDLWNLNLDTEVPAT  351 (401)
Q Consensus       337 i~iwd~~~~~~~~~~  351 (401)
                      |++||+.+++.+..+
T Consensus       217 lr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  217 LRLWDITSGKLLDTC  231 (390)
T ss_pred             EEEEecccCCccccc
Confidence            999999999876443

>KOG4714|consensus

Probab=99.11  E-value=6e-09  Score=81.63  Aligned_cols=149  Identities=16%  Similarity=0.142  Sum_probs=97.9

Q ss_pred             ceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEe-----CCCcEEEeeccCCCCCcc
Q psy17342        132 YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS-----NDGRLCSWSLEMLSSPQE  206 (401)
Q Consensus       132 ~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-----~dg~i~~wd~~~~~~~~~  206 (401)
                      +-++++..||.+.+.+.+..... ..+.+   ..|.+ -.+.++  ...++.+.++.     .-+..+.|+++.    ..
T Consensus       102 t~V~~~~~dg~~~v~s~~~~~~~-~~~i~---~~~~~-~as~~~--~~~~~~i~s~~~g~~n~~d~~~a~~~~p----~~  170 (319)
T KOG4714|consen  102 NRVCIGYADGSLAVFSTDKDLAL-MSRIP---SIHSG-SASRKI--CRHGNSILSGGCGNWNAQDNFYANTLDP----IK  170 (319)
T ss_pred             CceEecCCCceEEEEechHHHhh-hhhcc---ccccc-ccccce--eecccEEecCCcceEeeccceeeecccc----cc
Confidence            46888999999999998762211 10100   01111 112222  22333333322     223455666652    22


Q ss_pred             ccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEE
Q psy17342        207 TRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL  286 (401)
Q Consensus       207 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~  286 (401)
                      .+....   . ....|.+++-+|...+.+++|+.||.+-+||.+... -+...+..|+.+|..+.|+|.+     +..|+
T Consensus       171 t~~~~~---~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~-----p~~Lf  240 (319)
T KOG4714|consen  171 TLIPSK---K-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKN-----PEHLF  240 (319)
T ss_pred             cccccc---c-ccccchhhhCCcccccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheeccCCC-----chhee
Confidence            221111   1 223499999997778889999999999999998763 3567788999999999999987     78999


Q ss_pred             EEeCCCeEEEEEeeC
Q psy17342        287 TSSYDWSVKLWNIKE  301 (401)
Q Consensus       287 s~~~d~~i~iwd~~~  301 (401)
                      +++.||.+.-||..+
T Consensus       241 t~sedGslw~wdas~  255 (319)
T KOG4714|consen  241 TCSEDGSLWHWDAST  255 (319)
T ss_pred             EecCCCcEEEEcCCC
Confidence            999999999999764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.10  E-value=1.6e-07  Score=83.76  Aligned_cols=270  Identities=13%  Similarity=0.082  Sum_probs=151.7

Q ss_pred             CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCe-eEEEEeCCCCceEEEEecCCeEEEEECCCCCCCc
Q psy17342         77 HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPV-LSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTP  155 (401)
Q Consensus        77 ~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~  155 (401)
                      +..+++++          .++.|..+|..+++.+-+....  ..+ .....  ++ ..++.++.+|.+..+|..+++...
T Consensus        65 ~~~v~v~~----------~~g~v~a~d~~tG~~~W~~~~~--~~~~~~p~v--~~-~~v~v~~~~g~l~ald~~tG~~~W  129 (377)
T TIGR03300        65 GGKVYAAD----------ADGTVVALDAETGKRLWRVDLD--ERLSGGVGA--DG-GLVFVGTEKGEVIALDAEDGKELW  129 (377)
T ss_pred             CCEEEEEC----------CCCeEEEEEccCCcEeeeecCC--CCcccceEE--cC-CEEEEEcCCCEEEEEECCCCcEee
Confidence            44677777          6899999999888765444333  222 12222  23 466677789999999998877542


Q ss_pred             eeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeE
Q psy17342        156 VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNF  235 (401)
Q Consensus       156 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  235 (401)
                      ...       ..+.+.+...   -.+..++.++.+|.+..+|.+++.. ............ .. ...+....   +..+
T Consensus       130 ~~~-------~~~~~~~~p~---v~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~-~~-~~~sp~~~---~~~v  193 (377)
T TIGR03300       130 RAK-------LSSEVLSPPL---VANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALT-LR-GSASPVIA---DGGV  193 (377)
T ss_pred             eec-------cCceeecCCE---EECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCcee-ec-CCCCCEEE---CCEE
Confidence            211       1122222111   1244677778899999999876332 111111110000 00 00111122   2467


Q ss_pred             EEEcCCceEEEEeCCCCCCCceeeecCC-C---C---ceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEE
Q psy17342        236 VVGCEDGNVYSACRHGNKAGNVECYEGH-E---G---PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSF  308 (401)
Q Consensus       236 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~-~---~---~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  308 (401)
                      +++..++.++.+|..+.+  .+-..... .   .   ....+.-.|..   . +..++.++.++.+..||..+++.+...
T Consensus       194 ~~~~~~g~v~ald~~tG~--~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~-~~~vy~~~~~g~l~a~d~~tG~~~W~~  267 (377)
T TIGR03300       194 LVGFAGGKLVALDLQTGQ--PLWEQRVALPKGRTELERLVDVDGDPVV---D-GGQVYAVSYQGRVAALDLRSGRVLWKR  267 (377)
T ss_pred             EEECCCCEEEEEEccCCC--EeeeeccccCCCCCchhhhhccCCccEE---E-CCEEEEEEcCCEEEEEECCCCcEEEee
Confidence            788888999999886443  22211100 0   0   00111111210   0 356777788999999999999877665


Q ss_pred             eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEec
Q psy17342        309 NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       309 ~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~  388 (401)
                      .. . .......  .+. .++.++.||.+..+|..+++.+..... .. .........  .+..|++++.+|.|+++|..
T Consensus       268 ~~-~-~~~~p~~--~~~-~vyv~~~~G~l~~~d~~tG~~~W~~~~-~~-~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~  338 (377)
T TIGR03300       268 DA-S-SYQGPAV--DDN-RLYVTDADGVVVALDRRSGSELWKNDE-LK-YRQLTAPAV--VGGYLVVGDFEGYLHWLSRE  338 (377)
T ss_pred             cc-C-CccCceE--eCC-EEEEECCCCeEEEEECCCCcEEEcccc-cc-CCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence            52 1 1122222  333 466677899999999998875433311 11 111122222  46788999999999999999


Q ss_pred             cCcc
Q psy17342        389 EVGI  392 (401)
Q Consensus       389 ~~~~  392 (401)
                      ++++
T Consensus       339 tG~~  342 (377)
T TIGR03300       339 DGSF  342 (377)
T ss_pred             CCCE
Confidence            8853

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2695|consensus

Probab=99.09  E-value=6.1e-10  Score=90.56  Aligned_cols=166  Identities=13%  Similarity=0.181  Sum_probs=119.6

Q ss_pred             EEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCC---CCceeeec
Q psy17342        185 ISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK---AGNVECYE  261 (401)
Q Consensus       185 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~---~~~~~~~~  261 (401)
                      ++.+.+..+.+-++.++  ..+.+.        ....|.++.|. ..++++..|+.+|.|..+|++...   ..+...+.
T Consensus       228 fs~G~sqqv~L~nvetg--~~qsf~--------sksDVfAlQf~-~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly  296 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETG--HQQSFQ--------SKSDVFALQFA-GSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY  296 (425)
T ss_pred             ecccccceeEEEEeecc--cccccc--------cchhHHHHHhc-ccCCeeEecccCCcEEEEEeeecccCCCcceEEEE
Confidence            56677778888888752  222211        45678899998 788999999999999999998541   22334443


Q ss_pred             CCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc---eEEEeecCCceE--EEEECCCCCcEEEEEecCCE
Q psy17342        262 GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP---VHSFNEFRDYVM--DVQWSPINPALFATVEVAGR  336 (401)
Q Consensus       262 ~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~--~v~~~~~~~~~l~~~~~d~~  336 (401)
                       |...|+++..-...     .++|++.+.+|+|++||.+.-++   +.++.+|-..-.  -+-..+... .+++++.|..
T Consensus       297 -h~Ssvtslq~Lq~s-----~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcy  369 (425)
T KOG2695|consen  297 -HDSSVTSLQILQFS-----QQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCY  369 (425)
T ss_pred             -cCcchhhhhhhccc-----cceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc-eEEEccCeeE
Confidence             88999999877643     68899999999999999998766   888888754322  233455555 7788999999


Q ss_pred             EEEEeCCCCCCCcceEEeecC-CCCeEEEEecC
Q psy17342        337 VDLWNLNLDTEVPATSAIVEG-APALSRVTWTP  368 (401)
Q Consensus       337 i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~s~  368 (401)
                      .+||.++.+..+.++..+... ...+.+++|..
T Consensus       370 tRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  370 TRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             EEEEecccCceeeccCCCCccccccccceehhc
Confidence            999999998877665433222 22456666653

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.06  E-value=1.5e-07  Score=80.82  Aligned_cols=271  Identities=14%  Similarity=0.166  Sum_probs=156.9

Q ss_pred             cceEEEEecCCCCCeEEEEeccC-----CCCCCCCCcEEEEEeCcCCCCCceEEEec-----------------------
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRN-----KEAPNEPDGVCLIWNTKFKKTTPEFEFFC-----------------------  117 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~-----~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-----------------------  117 (401)
                      ..|..+.|+|.+++|.+-.+.+.     .+..-..++.+.+||..++..+..+....                       
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~  151 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG  151 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence            55899999999999999886553     22233345579999998765443332211                       


Q ss_pred             ---------------------CCCeeEEEEeCCCCc-eEEE-----EecCCeEEEEECCCCCCCceeeccccccCCCCcE
Q psy17342        118 ---------------------QSPVLSCCFAKFNPY-LILG-----GTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPV  170 (401)
Q Consensus       118 ---------------------~~~v~~~~~~~~~~~-~l~~-----g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  170 (401)
                                           ...+....|+|.+.. .|+.     +...+++++|.+..+......      .-....-
T Consensus       152 ~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk------~lfk~~~  225 (561)
T COG5354         152 SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK------NLFKVSG  225 (561)
T ss_pred             CeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee------eeEeecc
Confidence                                 133445555553211 1221     234455666666533321110      0001111


Q ss_pred             EEEEEeecCCceEEEEEe-----------CCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEE--E
Q psy17342        171 FCMSVIGTQNAHNLISIS-----------NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFV--V  237 (401)
Q Consensus       171 ~~~~~~~~~~~~~l~s~~-----------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~--~  237 (401)
                      ..+.|  .+.|++++.--           ....+.++++.....+..         .....+|..++|. |.++.++  .
T Consensus       226 ~qLkW--~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~---------~~~~~pVhdf~W~-p~S~~F~vi~  293 (561)
T COG5354         226 VQLKW--QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE---------KDLKDPVHDFTWE-PLSSRFAVIS  293 (561)
T ss_pred             cEEEE--ecCCceEEEEEEEeeecccceeccceEEEEeeccccccee---------ccccccceeeeec-ccCCceeEEe
Confidence            23445  66666554311           123567777653111111         1246789999999 5555544  3


Q ss_pred             EcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC---CeEEEEEeeCCCceE-EEeecCC
Q psy17342        238 GCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD---WSVKLWNIKENKPVH-SFNEFRD  313 (401)
Q Consensus       238 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~-~~~~~~~  313 (401)
                      |.....+.++|++++   ....  .....=+.+.|+|.      +++++.++.|   |.+.+||......+. .+.+.  
T Consensus       294 g~~pa~~s~~~lr~N---l~~~--~Pe~~rNT~~fsp~------~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--  360 (561)
T COG5354         294 GYMPASVSVFDLRGN---LRFY--FPEQKRNTIFFSPH------ERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--  360 (561)
T ss_pred             cccccceeecccccc---eEEe--cCCcccccccccCc------ccEEEEecCCccccceEEeccCCceEEEEEeecC--
Confidence            467888999999865   2222  33444567889998      7888887765   689999986543333 55553  


Q ss_pred             ceEEEEECCCCCcEEEEEe------cCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC
Q psy17342        314 YVMDVQWSPINPALFATVE------VAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK  379 (401)
Q Consensus       314 ~v~~v~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  379 (401)
                      ...-+.|+|+++ ++.+..      .|..|+|||+......           ..+.+.|.|.|++.-+.+.+
T Consensus       361 n~s~~~wspd~q-F~~~~~ts~k~~~Dn~i~l~~v~g~~~f-----------el~~~~W~p~~~~~ttsSs~  420 (561)
T COG5354         361 NTSYCDWSPDGQ-FYDTDTTSEKLRVDNSIKLWDVYGAKVF-----------ELTNITWDPSGQYVTTSSSC  420 (561)
T ss_pred             CceEeeccCCce-EEEecCCCcccccCcceEEEEecCchhh-----------hhhhccccCCcccceeeccC
Confidence            345578999998 444432      4788999999764322           24456666666665554443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.04  E-value=7.2e-08  Score=82.16  Aligned_cols=221  Identities=14%  Similarity=0.158  Sum_probs=146.0

Q ss_pred             CCCCceEEEEecCCeEEEEECCCCCCCceeec-cccccC-CC---CcEEEEE-EeecCCceEEEEEeCCCcEEEeeccCC
Q psy17342        128 KFNPYLILGGTYSGQIVLWDTRVQKKTPVHRT-PLSVMA-HT---HPVFCMS-VIGTQNAHNLISISNDGRLCSWSLEML  201 (401)
Q Consensus       128 ~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~-~~~~~~-~~---~~v~~~~-~~~~~~~~~l~s~~~dg~i~~wd~~~~  201 (401)
                      .+|+++++.  ..|.|.+||..+.......-. ++.-.. ..   .+..-+. |. ..+|++++..|. |...+.+... 
T Consensus       276 sDGkrIvFq--~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa-~~~Gd~ia~VSR-GkaFi~~~~~-  350 (668)
T COG4946         276 SDGKRIVFQ--NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFA-VVNGDYIALVSR-GKAFIMRPWD-  350 (668)
T ss_pred             CCCcEEEEe--cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhc-cCCCcEEEEEec-CcEEEECCCC-
Confidence            456555554  458899999987665322111 111000 01   1111111 11 246778888776 4555544331 


Q ss_pred             CCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCc-eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCC
Q psy17342        202 SSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG-NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHID  280 (401)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~  280 (401)
                         ...++      .++...|.-..+. .+++-++.|..|| .+-++|..+.   .+..+...-+.|.++..+|+     
T Consensus       351 ---~~~iq------v~~~~~VrY~r~~-~~~e~~vigt~dgD~l~iyd~~~~---e~kr~e~~lg~I~av~vs~d-----  412 (668)
T COG4946         351 ---GYSIQ------VGKKGGVRYRRIQ-VDPEGDVIGTNDGDKLGIYDKDGG---EVKRIEKDLGNIEAVKVSPD-----  412 (668)
T ss_pred             ---CeeEE------cCCCCceEEEEEc-cCCcceEEeccCCceEEEEecCCc---eEEEeeCCccceEEEEEcCC-----
Confidence               11111      2255668777777 7778999999999 7999998755   35667778899999999999     


Q ss_pred             CCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCC----EEEEEeCCCCCCCcceEEeec
Q psy17342        281 FSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAG----RVDLWNLNLDTEVPATSAIVE  356 (401)
Q Consensus       281 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~  356 (401)
                       +..++.+.....+.+.|+.+++....-+...+-|+.++|+|+++ ++|-+--+|    .|+++|+..++.... ..   
T Consensus       413 -GK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~Kiy~v-TT---  486 (668)
T COG4946         413 -GKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGGKIYDV-TT---  486 (668)
T ss_pred             -CcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCCeEEEe-cC---
Confidence             79999999888999999999887655555567899999999997 677765554    799999998664322 11   


Q ss_pred             CCCCeEEEEecCCCcEEEEEe
Q psy17342        357 GAPALSRVTWTPNGTQLCVGD  377 (401)
Q Consensus       357 ~~~~v~~~~~s~~g~~l~~~~  377 (401)
                      ..+.=.+-+|.|||++|.--+
T Consensus       487 ~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         487 PTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             CcccccCcccCCCCcEEEEEe
Confidence            122234568999999886543

>KOG4190|consensus

Probab=99.02  E-value=9.2e-10  Score=95.16  Aligned_cols=168  Identities=12%  Similarity=0.117  Sum_probs=126.7

Q ss_pred             ccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCC-----CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe
Q psy17342        215 KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK-----AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS  289 (401)
Q Consensus       215 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~  289 (401)
                      +.+|...|..++-- .+.+-+++++.|.+|++|.++...     ..+..+++.|+.+|.++.|-.+      .+++++  
T Consensus       731 f~GH~~~iRai~Ai-dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~------lr~i~S--  801 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAI-DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD------LRSIAS--  801 (1034)
T ss_pred             ccCcHHHhHHHHhc-ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec------cceeee--
Confidence            56788899888777 788999999999999999987532     2356788999999999999876      456655  


Q ss_pred             CCCeEEEEEeeCCCceEEEee--cCCceEEEEECC--CCCcEEEEEecCCEEEEEeCCCCCCCcceEEe--ecCCCCeEE
Q psy17342        290 YDWSVKLWNIKENKPVHSFNE--FRDYVMDVQWSP--INPALFATVEVAGRVDLWNLNLDTEVPATSAI--VEGAPALSR  363 (401)
Q Consensus       290 ~d~~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~  363 (401)
                      .|+-|.+||.--++++..+..  ..+.+..+..-|  +...+++.++...+|+++|.+..+....++.-  ......+.+
T Consensus       802 cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~  881 (1034)
T KOG4190|consen  802 CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA  881 (1034)
T ss_pred             ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence            489999999887877764432  122333333333  34434455578899999999988765555432  122456889


Q ss_pred             EEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        364 VTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       364 ~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      ++..+.|++++++-++|.|.+.|.++|+
T Consensus       882 iaVa~~GN~lAa~LSnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  882 IAVADKGNKLAAALSNGCIAILDARNGK  909 (1034)
T ss_pred             EEeccCcchhhHHhcCCcEEEEecCCCc
Confidence            9999999999999999999999999985

>KOG1645|consensus

Probab=98.98  E-value=9.9e-08  Score=79.58  Aligned_cols=249  Identities=12%  Similarity=0.109  Sum_probs=144.2

Q ss_pred             cccceEEEEecCCCCC-eEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         64 KNRNVTYMDWSTQHPE-LLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~-l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      +...|..++|+|..+- +..++          .+.+|+|.|+++...+..+..+  ..+.+++|.-+..+++++|..+|.
T Consensus       192 ~g~~IrdlafSp~~~GLl~~as----------l~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~IYaGl~nG~  259 (463)
T KOG1645|consen  192 EGSFIRDLAFSPFNEGLLGLAS----------LGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHVIYAGLQNGM  259 (463)
T ss_pred             cchhhhhhccCccccceeeeec----------cCceEEEEecccceeeeheecc--CCceeeeeccCCcceeEEeccCce
Confidence            5678999999999884 55555          6999999999987766655543  889999999988899999999999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEee----cCCceEEEEEeCCCcEEEeeccCCCCC-ccccccccccccC
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG----TQNAHNLISISNDGRLCSWSLEMLSSP-QETRDLQYNNKQT  217 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~  217 (401)
                      |.|||++..+.... .  +.-.....+|..++...    .+.+..++..+.  .+..|++...... ....++      .
T Consensus       260 VlvyD~R~~~~~~~-e--~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlel------e  328 (463)
T KOG1645|consen  260 VLVYDMRQPEGPLM-E--LVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLEL------E  328 (463)
T ss_pred             EEEEEccCCCchHh-h--hhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCccccc------C
Confidence            99999987654211 0  00112334555555421    123444444443  3567776542211 111221      1


Q ss_pred             CccceEEEEeccCCCCeEEEEcCCce------EEEEeCCCCCCCce-eeecCCC-Cce-----eeeec-CccCCCCCCCc
Q psy17342        218 KNLAVLSLAFPQNDVNNFVVGCEDGN------VYSACRHGNKAGNV-ECYEGHE-GPV-----VGLSS-HRAQGHIDFSH  283 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~~~~~d~~------i~~~~~~~~~~~~~-~~~~~~~-~~v-----~~i~~-~~~~~~~~~~~  283 (401)
                      ..+.+.++.+.+.....+++.-.+..      +-. ......+.++ ..-.++. +.-     +...+ .+++     .-
T Consensus       329 ~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~-~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n-----n~  402 (463)
T KOG1645|consen  329 PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILG-RIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN-----NY  402 (463)
T ss_pred             CCcceeeeeecCccceEEEEecCCCCCccceeeee-eeccccCceeeeecccccCCcccccccccceeccccc-----cE
Confidence            34566677777333333443322111      111 0000011011 0111110 000     01111 1221     23


Q ss_pred             EEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCC-CCcEEEEEecCCEEEEEeCC
Q psy17342        284 LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPI-NPALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       284 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~l~~~~~d~~i~iwd~~  343 (401)
                      ++..+...+.+.+||..+.+.++++.. +.+|.+++.... +..+|+.-. |..++||..+
T Consensus       403 iv~~gd~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  403 IVVVGDSTNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             EEEecCCcceeEEeccchhheeeeccc-CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence            445566678899999999999999887 578888876543 444666654 6689998754

>KOG1645|consensus

Probab=98.96  E-value=1.2e-07  Score=79.05  Aligned_cols=265  Identities=11%  Similarity=0.024  Sum_probs=149.9

Q ss_pred             EEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeec
Q psy17342         99 CLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGT  178 (401)
Q Consensus        99 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  178 (401)
                      +++.+..+-+... +...+...|..++|+|...-++..++.+..|+|.|+++....      ..+..+ ..+++++|. -
T Consensus       175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v------ssy~a~-~~~wSC~wD-l  245 (463)
T KOG1645|consen  175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV------SSYIAY-NQIWSCCWD-L  245 (463)
T ss_pred             eEEeccCCcchhh-cccccchhhhhhccCccccceeeeeccCceEEEEecccceee------eheecc-CCceeeeec-c
Confidence            5555554444333 444567789999999987658889999999999999987654      223445 789999994 2


Q ss_pred             CCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCC-----CCeEEEEcCCceEEEEeCCCCC
Q psy17342        179 QNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQND-----VNNFVVGCEDGNVYSACRHGNK  253 (401)
Q Consensus       179 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~d~~i~~~~~~~~~  253 (401)
                      .+.+++..|-.+|.|.+||++....+...+.-..     ...+|..++.-+++     +..++....+  +..|......
T Consensus       246 de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~-----t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~  318 (463)
T KOG1645|consen  246 DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANV-----TINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSA  318 (463)
T ss_pred             CCcceeEEeccCceEEEEEccCCCchHhhhhhhh-----ccCcceeecccCccccccccceEEeeehh--hhhhhhhccc
Confidence            3356777888899999999997554444333211     34456666655333     2233333222  2334433222


Q ss_pred             CCceeeec-CCCCceeeeecCccCCCCCCCcEEEEEeCCC------eEEE-EEeeCCCceEEEe-ec-CC------ceEE
Q psy17342        254 AGNVECYE-GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW------SVKL-WNIKENKPVHSFN-EF-RD------YVMD  317 (401)
Q Consensus       254 ~~~~~~~~-~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~------~i~i-wd~~~~~~~~~~~-~~-~~------~v~~  317 (401)
                      ......++ +..+...++++++..     ...+++.-.+.      .|-. -|...|.++..-+ .+ ..      .-..
T Consensus       319 ~~~p~vlele~pG~cismqy~~~s-----nh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~a  393 (463)
T KOG1645|consen  319 ECLPCVLELEPPGICISMQYHGVS-----NHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQA  393 (463)
T ss_pred             cCCCcccccCCCcceeeeeecCcc-----ceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccc
Confidence            11111111 235566677777653     23444432211      0111 1112233322211 11 00      0011


Q ss_pred             EEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC--CcEEEEEecCCcEEEEEecc
Q psy17342        318 VQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN--GTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       318 v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~dg~v~iw~~~~  389 (401)
                      +.-.++...++..+...+.+.+||..+.+.++.+..    ..+|..++...-  +.+|++-.+| .++||..+.
T Consensus       394 i~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~----~epv~Dicp~~~n~~syLa~LTd~-~v~Iyk~es  462 (463)
T KOG1645|consen  394 IRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLAL----SEPVLDICPNDTNGSSYLALLTDD-RVHIYKNES  462 (463)
T ss_pred             eeccccccEEEEecCCcceeEEeccchhheeeeccc----CcceeecceeecCCcchhhheecc-eEEEEecCC
Confidence            222345555556666778999999999887777643    467777666532  4566666644 689887653

>KOG1275|consensus

Probab=98.96  E-value=1.9e-08  Score=92.13  Aligned_cols=186  Identities=15%  Similarity=0.259  Sum_probs=137.8

Q ss_pred             CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceee
Q psy17342        180 NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVEC  259 (401)
Q Consensus       180 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~  259 (401)
                      ++..++.|+....+..+|+++... .....+       ....|.-+.   .+++.+.+|...|.|.+-|.++  .+.+++
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e-~r~~~v-------~a~~v~imR---~Nnr~lf~G~t~G~V~LrD~~s--~~~iht  212 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKE-TRTTNV-------SASGVTIMR---YNNRNLFCGDTRGTVFLRDPNS--FETIHT  212 (1118)
T ss_pred             CCcceeecchhhheeeeeccccee-eeeeec-------cCCceEEEE---ecCcEEEeecccceEEeecCCc--Cceeee
Confidence            455677777777888889876221 111111       222355555   4578999999999999999884  457899


Q ss_pred             ecCCCCceeeeecCccCCCCCCCcEEEEEeC---------CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEE
Q psy17342        260 YEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY---------DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFAT  330 (401)
Q Consensus       260 ~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~  330 (401)
                      +.+|.+.|..+...        +++|++|+.         |.-|+|||++.-+.+..+..+.++ .-+.|+|.-...++.
T Consensus       213 ~~aHs~siSDfDv~--------GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V  283 (1118)
T KOG1275|consen  213 FDAHSGSISDFDVQ--------GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAV  283 (1118)
T ss_pred             eeccccceeeeecc--------CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEE
Confidence            99999999998887        789999885         556899999988777666655444 557889987667888


Q ss_pred             EecCCEEEEEeCCCCCCC-cceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342        331 VEVAGRVDLWNLNLDTEV-PATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV  387 (401)
Q Consensus       331 ~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~  387 (401)
                      ++..|...+-|..+-... ............+..+.+|++|+.||.|..+|.|.+|.-
T Consensus       284 ~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  284 TSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             EecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            999999999994332222 122222333455999999999999999999999999983

>KOG3617|consensus

Probab=98.94  E-value=1.3e-07  Score=86.38  Aligned_cols=278  Identities=14%  Similarity=0.184  Sum_probs=161.6

Q ss_pred             EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECC
Q psy17342         70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTR  149 (401)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~  149 (401)
                      -..|+|..++++++++.+      ...|.|.||--. |+.....  .-+-.+++++|+|.. .+|+.|-.-|.+.+|...
T Consensus        20 i~SWHPsePlfAVA~fS~------er~GSVtIfadt-GEPqr~V--t~P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~~   89 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSP------ERGGSVTIFADT-GEPQRDV--TYPVHATSLCWHPEE-FVLAQGWEMGVSDVQKTN   89 (1416)
T ss_pred             ccccCCCCceeEEEEecC------CCCceEEEEecC-CCCCccc--ccceehhhhccChHH-HHHhhccccceeEEEecC
Confidence            356999999999998643      467899998644 4422222  223456789999954 789999999999999988


Q ss_pred             CCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccc---------------c-
Q psy17342        150 VQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY---------------N-  213 (401)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~---------------~-  213 (401)
                      +.+....      ...|..+|..+.|  +++|..++++..-|.+.+|.....++.+....+..               . 
T Consensus        90 ~~e~htv------~~th~a~i~~l~w--S~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~  161 (1416)
T KOG3617|consen   90 TTETHTV------VETHPAPIQGLDW--SHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDR  161 (1416)
T ss_pred             Cceeeee------ccCCCCCceeEEe--cCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCCh
Confidence            7654321      2579999999999  99999999999999999998763222111111100               0 


Q ss_pred             ---------cccCCccceE-EEEec------------cCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeee
Q psy17342        214 ---------NKQTKNLAVL-SLAFP------------QNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLS  271 (401)
Q Consensus       214 ---------~~~~~~~~v~-~~~~~------------~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~  271 (401)
                               ...+....+- -..|-            -+++..++.++.+|.|+..|-.+...   ...+.. +. ..+-
T Consensus       162 Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g~~~---~V~k~d-S~-vQmL  236 (1416)
T KOG3617|consen  162 EEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNGRQR---TVHKLD-SE-VQML  236 (1416)
T ss_pred             HHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCCcEE---EEEEcc-ch-HHHH
Confidence                     0000000000 00010            14566788888888888877654321   111111 00 1233


Q ss_pred             cCccCCCCCCCcEEEEEeCCCeEEEEEee-CC--------------------------------CceEEEeecCCceEEE
Q psy17342        272 SHRAQGHIDFSHLYLTSSYDWSVKLWNIK-EN--------------------------------KPVHSFNEFRDYVMDV  318 (401)
Q Consensus       272 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~--------------------------------~~~~~~~~~~~~v~~v  318 (401)
                      |.|.      ..-++.--.+-++.++-+. +|                                .+..-+. ....++++
T Consensus       237 f~~~------~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e-~ge~~~c~  309 (1416)
T KOG3617|consen  237 FMGY------CEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLE-LGEGILCM  309 (1416)
T ss_pred             Hhcc------cceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhh-cCCceEEE
Confidence            3332      1222222222222222111 01                                0111111 24568999


Q ss_pred             EECCCCCcEEEEEecCCEEEEEeCCCCCCC-------cceEEeecCCCCeEEEEecCCCcEEEEEec
Q psy17342        319 QWSPINPALFATVEVAGRVDLWNLNLDTEV-------PATSAIVEGAPALSRVTWTPNGTQLCVGDE  378 (401)
Q Consensus       319 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  378 (401)
                      +++..+. .++.|...|.+.+|.-......       ..+.........|+.+.|.|-...+++-+.
T Consensus       310 cY~~~~~-~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~  375 (1416)
T KOG3617|consen  310 CYGEKEI-RLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTE  375 (1416)
T ss_pred             EEeccce-EEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhh
Confidence            9999886 7888999999999964332221       122222223467999999987665555443

>KOG4714|consensus

Probab=98.92  E-value=1.1e-08  Score=80.12  Aligned_cols=189  Identities=19%  Similarity=0.218  Sum_probs=115.8

Q ss_pred             CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc-----CCceEEEEeCCCCCC
Q psy17342        180 NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-----EDGNVYSACRHGNKA  254 (401)
Q Consensus       180 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~d~~i~~~~~~~~~~  254 (401)
                      -+..++++..||.+.+++.+...........       ....-.+.++. ..++.+.++.     .-+..+.|+++..+.
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~-------~~~~~as~~~~-~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t  171 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPS-------IHSGSASRKIC-RHGNSILSGGCGNWNAQDNFYANTLDPIKT  171 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhccc-------cccccccccee-ecccEEecCCcceEeeccceeeeccccccc
Confidence            4567899999999999998742111111111       01111112222 2233333321     123445666653332


Q ss_pred             CceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC-ceEEEeecCCceEEEEECCCCCcEEEEEec
Q psy17342        255 GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK-PVHSFNEFRDYVMDVQWSPINPALFATVEV  333 (401)
Q Consensus       255 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~  333 (401)
                      ..... + ....|.+++-+|..     ..++++|+.||.+-+||.++.. +...+..|+.+++.+-|+|..+.-|.++++
T Consensus       172 ~~~~~-~-~~~~v~~l~~hp~q-----q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se  244 (319)
T KOG4714|consen  172 LIPSK-K-ALDAVTALCSHPAQ-----QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE  244 (319)
T ss_pred             ccccc-c-ccccchhhhCCccc-----ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC
Confidence            11111 1 22349999999987     6888999999999999998853 445577899999999999988778899999


Q ss_pred             CCEEEEEeCCCCCCCcc-------------------eEEe--e-cCCCCeEEEEecCCCcEEEEEecCCcEEEEE
Q psy17342        334 AGRVDLWNLNLDTEVPA-------------------TSAI--V-EGAPALSRVTWTPNGTQLCVGDEKGAITMFD  386 (401)
Q Consensus       334 d~~i~iwd~~~~~~~~~-------------------~~~~--~-~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~  386 (401)
                      ||.+..||..+. .+..                   +...  . .....|++  |.--|..|++|++-+-|++++
T Consensus       245 dGslw~wdas~~-~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  245 DGSLWHWDASTT-FLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             CCcEEEEcCCCc-eEEecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence            999999998741 1100                   0000  0 00112222  333588899999999898875

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.87  E-value=7.8e-06  Score=68.13  Aligned_cols=225  Identities=12%  Similarity=0.097  Sum_probs=140.3

Q ss_pred             EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEe-CCCCceEEEEecCCeEEEEEC
Q psy17342         70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFA-KFNPYLILGGTYSGQIVLWDT  148 (401)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~g~~dg~v~iw~~  148 (401)
                      ++.|.+....|.....         ..+.|..|+..++...   ... ......+++. +++ .++++ .. +.+.++|.
T Consensus         4 gp~~d~~~g~l~~~D~---------~~~~i~~~~~~~~~~~---~~~-~~~~~G~~~~~~~g-~l~v~-~~-~~~~~~d~   67 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDI---------PGGRIYRVDPDTGEVE---VID-LPGPNGMAFDRPDG-RLYVA-DS-GGIAVVDP   67 (246)
T ss_dssp             EEEEETTTTEEEEEET---------TTTEEEEEETTTTEEE---EEE-SSSEEEEEEECTTS-EEEEE-ET-TCEEEEET
T ss_pred             ceEEECCCCEEEEEEc---------CCCEEEEEECCCCeEE---EEe-cCCCceEEEEccCC-EEEEE-Ec-CceEEEec
Confidence            5678884445555553         6899999999865322   122 2237788888 543 45544 34 45666698


Q ss_pred             CCCCCCceeeccccccC-CCCcEEEEEEeecCCceEEEEEeCC--------CcEEEeeccCCCCCccccccccccccCCc
Q psy17342        149 RVQKKTPVHRTPLSVMA-HTHPVFCMSVIGTQNAHNLISISND--------GRLCSWSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       149 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                      .+++.......+  ... .....+.+++  .++|...++....        |.|..++..  .....   +..     .-
T Consensus        68 ~~g~~~~~~~~~--~~~~~~~~~ND~~v--d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~---~~~-----~~  133 (246)
T PF08450_consen   68 DTGKVTVLADLP--DGGVPFNRPNDVAV--DPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTV---VAD-----GL  133 (246)
T ss_dssp             TTTEEEEEEEEE--TTCSCTEEEEEEEE---TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEE---EEE-----EE
T ss_pred             CCCcEEEEeecc--CCCcccCCCceEEE--cCCCCEEEEecCCCccccccccceEEECCC--CeEEE---Eec-----Cc
Confidence            887554333221  012 4456788988  8999977776654        345555544  11111   111     23


Q ss_pred             cceEEEEeccCCCCeEE-EEcCCceEEEEeCCCCCCC-----ceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCe
Q psy17342        220 LAVLSLAFPQNDVNNFV-VGCEDGNVYSACRHGNKAG-----NVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWS  293 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~-~~~~d~~i~~~~~~~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~  293 (401)
                      .....++|+ ++++.|+ +-+..+.|+.+++......     ....+....+..-.+++..+      +++.++....+.
T Consensus       134 ~~pNGi~~s-~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~------G~l~va~~~~~~  206 (246)
T PF08450_consen  134 GFPNGIAFS-PDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD------GNLWVADWGGGR  206 (246)
T ss_dssp             SSEEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT------S-EEEEEETTTE
T ss_pred             ccccceEEC-CcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC------CCEEEEEcCCCE
Confidence            356789999 7887655 6678888999988643321     11122222234678888887      788888888999


Q ss_pred             EEEEEeeCCCceEEEeecCCceEEEEE-CCCCCcEEEEEe
Q psy17342        294 VKLWNIKENKPVHSFNEFRDYVMDVQW-SPINPALFATVE  332 (401)
Q Consensus       294 i~iwd~~~~~~~~~~~~~~~~v~~v~~-~~~~~~~l~~~~  332 (401)
                      |.++|.+ ++.+..+......+++++| -|+...++++..
T Consensus       207 I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  207 IVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             EEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             EEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence            9999987 8888888876568999999 466666666653

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2066|consensus

Probab=98.87  E-value=1.8e-07  Score=84.92  Aligned_cols=186  Identities=17%  Similarity=0.214  Sum_probs=129.0

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS  197 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd  197 (401)
                      ...++|++++   ...++-|+.+|.|++.+.+.....        ...|...        ..+|.++++||.||+|.+-.
T Consensus        39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~~~--------~~~~s~~--------~~~Gey~asCS~DGkv~I~s   99 (846)
T KOG2066|consen   39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQGNPKT--------NFDHSSS--------ILEGEYVASCSDDGKVVIGS   99 (846)
T ss_pred             hhHHHHHHhh---cceeeeccccceEEEEecCCcccc--------ccccccc--------ccCCceEEEecCCCcEEEee
Confidence            4567888885   378999999999999998765311        1234332        45899999999999999988


Q ss_pred             ccCCCCCccccccccccccCCccceEEEEeccC----CCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecC
Q psy17342        198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQN----DVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSH  273 (401)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  273 (401)
                      +-+.. ......        -..++.+++++|.    ..+.+++|+..| +.++..+--..+....+..-.++|.++.|.
T Consensus       100 l~~~~-~~~~~d--------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~  169 (846)
T KOG2066|consen  100 LFTDD-EITQYD--------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR  169 (846)
T ss_pred             ccCCc-cceeEe--------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec
Confidence            76522 222222        2347899999942    256799999998 777654321111122455567899999998


Q ss_pred             ccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCC------ceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        274 RAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRD------YVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       274 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                              ++++|-++.+| |++||..+++.+..++....      ....+.|.++..  ++.| ...+|+|..++.
T Consensus       170 --------g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIG-W~d~v~i~~I~~  234 (846)
T KOG2066|consen  170 --------GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIG-WGDSVKICSIKK  234 (846)
T ss_pred             --------CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe--EEEe-cCCeEEEEEEec
Confidence                    78999888555 99999998887776654322      234688888874  4444 344899998873

>KOG2695|consensus

Probab=98.86  E-value=8.4e-09  Score=84.10  Aligned_cols=167  Identities=14%  Similarity=0.172  Sum_probs=118.4

Q ss_pred             eEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcc-ccccc
Q psy17342        133 LILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQE-TRDLQ  211 (401)
Q Consensus       133 ~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~  211 (401)
                      .+.+| .+-.|-+-+++++-..        .....+.|.++.|  ...++++..|+.+|.|..+|++...+... ...  
T Consensus       227 hfs~G-~sqqv~L~nvetg~~q--------sf~sksDVfAlQf--~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~--  293 (425)
T KOG2695|consen  227 HFSVG-LSQQVLLTNVETGHQQ--------SFQSKSDVFALQF--AGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ--  293 (425)
T ss_pred             eeccc-ccceeEEEEeeccccc--------ccccchhHHHHHh--cccCCeeEecccCCcEEEEEeeecccCCCcceE--
Confidence            33344 5667888888876532        1236678899999  77788999999999999999986421111 111  


Q ss_pred             cccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCC-CceeeecCCCCceeeeec--CccCCCCCCCcEEEEE
Q psy17342        212 YNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKA-GNVECYEGHEGPVVGLSS--HRAQGHIDFSHLYLTS  288 (401)
Q Consensus       212 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-~~~~~~~~~~~~v~~i~~--~~~~~~~~~~~~l~s~  288 (401)
                         ..-|...|+++.....++++|++.+.+|.|.+||.+..+. .-+..+.||-..-.-+-+  .+.      ...++++
T Consensus       294 ---rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~e------eg~I~s~  364 (425)
T KOG2695|consen  294 ---RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEE------EGSIFSV  364 (425)
T ss_pred             ---EEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccc------cceEEEc
Confidence               2238889999988844889999999999999999985432 237778888654433333  333      5678889


Q ss_pred             eCCCeEEEEEeeCCCceEEEeecCC----ceEEEEEC
Q psy17342        289 SYDWSVKLWNIKENKPVHSFNEFRD----YVMDVQWS  321 (401)
Q Consensus       289 ~~d~~i~iwd~~~~~~~~~~~~~~~----~v~~v~~~  321 (401)
                      +.|...|||.++.+..+.+++....    .+.+++|.
T Consensus       365 GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  365 GDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             cCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            9999999999999999888765322    34455554

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.85  E-value=2.5e-07  Score=77.27  Aligned_cols=263  Identities=17%  Similarity=0.173  Sum_probs=150.0

Q ss_pred             eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecC------CCeeEEEEeCCCCceEEEE--ec
Q psy17342         68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ------SPVLSCCFAKFNPYLILGG--TY  139 (401)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~~g--~~  139 (401)
                      .-.+..+|+++.+.++..--.+..-|...-.|.+||.++.....++.+...      .....++++.+++ +++..  +-
T Consensus        38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk-~~~V~N~TP  116 (342)
T PF06433_consen   38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGK-FLYVQNFTP  116 (342)
T ss_dssp             SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSS-EEEEEEESS
T ss_pred             CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCc-EEEEEccCC
Confidence            444778999999887764333444455677899999998665655555432      1223346666663 33322  23


Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                      ...|.|-|+...+.......    .+      |....|..+ ..|.+-+.||.+.-..+...++...... .  .+....
T Consensus       117 a~SVtVVDl~~~kvv~ei~~----PG------C~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t-~--~F~~~~  182 (342)
T PF06433_consen  117 ATSVTVVDLAAKKVVGEIDT----PG------CWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKST-K--VFDPDD  182 (342)
T ss_dssp             SEEEEEEETTTTEEEEEEEG----TS------EEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEE-E--ESSTTT
T ss_pred             CCeEEEEECCCCceeeeecC----CC------EEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeec-c--ccCCCC
Confidence            34577777776654322111    11      222223333 4588999999999999986555442211 1  122222


Q ss_pred             cceE-EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCC----------CceeeeecCccCCCCCCCcEEEEE
Q psy17342        220 LAVL-SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHE----------GPVVGLSSHRAQGHIDFSHLYLTS  288 (401)
Q Consensus       220 ~~v~-~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~----------~~v~~i~~~~~~~~~~~~~~l~s~  288 (401)
                      .++. .-++. ..+..++.-+.+|.|+-.++.+...+....+.--.          +.-.-+++++..     +.+++.-
T Consensus       183 dp~f~~~~~~-~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~-----~rlyvLM  256 (342)
T PF06433_consen  183 DPLFEHPAYS-RDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS-----GRLYVLM  256 (342)
T ss_dssp             S-B-S--EEE-TTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT-----TEEEEEE
T ss_pred             cccccccceE-CCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecccc-----CeEEEEe
Confidence            2222 22333 45566777889999999998766543333332111          112235555542     3443332


Q ss_pred             e--CCC-------eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEE-EecCCEEEEEeCCCCCCCcceE
Q psy17342        289 S--YDW-------SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFAT-VEVAGRVDLWNLNLDTEVPATS  352 (401)
Q Consensus       289 ~--~d~-------~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~  352 (401)
                      .  .++       .|.++|+.+++.+.++.. ..++.+|+.+.+.+-+|++ ...++.|.+||..+++.+..+.
T Consensus       257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             cCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            2  111       588889999999999886 4568899999887646654 4568999999999998766554

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0882|consensus

Probab=98.85  E-value=2.1e-07  Score=78.82  Aligned_cols=291  Identities=12%  Similarity=0.067  Sum_probs=182.7

Q ss_pred             ccccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcC--CCCCceEEEecCCCeeEEEEeCCCCceEEE
Q psy17342         59 DEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKF--KKTTPEFEFFCQSPVLSCCFAKFNPYLILG  136 (401)
Q Consensus        59 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  136 (401)
                      ...+.|++.|+.+.-+. .+++++++          -||.++.|.-..  +.........|...+.+++.+-++ .++++
T Consensus         3 eksymhrd~i~hv~~tk-a~fiiqAS----------lDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~S   70 (558)
T KOG0882|consen    3 EKSYMHRDVITHVFPTK-AKFIIQAS----------LDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRS   70 (558)
T ss_pred             chhhcccceeeeEeeeh-hheEEeee----------cchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEee
Confidence            34456778888876554 45889999          699999998763  111111222367788889988877 68888


Q ss_pred             Eec-CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCc---eEEEEEeCCCcEEEeeccCCCCCcccccccc
Q psy17342        137 GTY-SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNA---HNLISISNDGRLCSWSLEMLSSPQETRDLQY  212 (401)
Q Consensus       137 g~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~  212 (401)
                      .+. |..++++|+.+-......+    +.--.+.   +.|..++..   ..-++.-.++.+.++|-.....+....    
T Consensus        71 v~d~Dhs~KvfDvEn~DminmiK----L~~lPg~---a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f----  139 (558)
T KOG0882|consen   71 VEDPDHSVKVFDVENFDMINMIK----LVDLPGF---AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF----  139 (558)
T ss_pred             ccCcccceeEEEeeccchhhhcc----cccCCCc---eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcccee----
Confidence            666 9999999998765432221    1112222   223212221   222334457889999976533222221    


Q ss_pred             ccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCC----CCCc---------eeeecCCCCceeeeecCccCCCC
Q psy17342        213 NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGN----KAGN---------VECYEGHEGPVVGLSSHRAQGHI  279 (401)
Q Consensus       213 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~----~~~~---------~~~~~~~~~~v~~i~~~~~~~~~  279 (401)
                        ..-|..+|.++.++ +.+..+++....|.|..|.....    ....         +..+........++.|+|+    
T Consensus       140 --kklH~sPV~~i~y~-qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~----  212 (558)
T KOG0882|consen  140 --KKLHFSPVKKIRYN-QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD----  212 (558)
T ss_pred             --cccccCceEEEEee-ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc----
Confidence              22378899999999 78999999999999999988741    0001         1111223456789999999    


Q ss_pred             CCCcEEEEEeCCCeEEEEEeeCCCceEEEee--------------------------------cC-CceEEEEECCCCCc
Q psy17342        280 DFSHLYLTSSYDWSVKLWNIKENKPVHSFNE--------------------------------FR-DYVMDVQWSPINPA  326 (401)
Q Consensus       280 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------------------------------~~-~~v~~v~~~~~~~~  326 (401)
                        +..+.+-+.|..|++++.++++.++.+..                                |. ..-+.+.|...+. 
T Consensus       213 --g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~-  289 (558)
T KOG0882|consen  213 --GAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGN-  289 (558)
T ss_pred             --cCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCC-
Confidence              78999999999999999999876554421                                11 1224566777786 


Q ss_pred             EEEEEecCCEEEEEeCCCCCCCcceEEe------------------------ecCCCCeEEEEecCCCcEEEEEecCCcE
Q psy17342        327 LFATVEVAGRVDLWNLNLDTEVPATSAI------------------------VEGAPALSRVTWTPNGTQLCVGDEKGAI  382 (401)
Q Consensus       327 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------------------~~~~~~v~~~~~s~~g~~l~~~~~dg~v  382 (401)
                      +|+.++-=| |++.++.++.....+-..                        .....+.  +.+-+|-.+++++-....+
T Consensus       290 flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~--~~~~~dpt~~c~a~kk~rf  366 (558)
T KOG0882|consen  290 FLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL--LEFQKDPTIVCTAFKKNRF  366 (558)
T ss_pred             EEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcc--cccCCCCeEEEeeeecceE
Confidence            555565443 777877766543221100                        0001122  2355666677777777788


Q ss_pred             EEE
Q psy17342        383 TMF  385 (401)
Q Consensus       383 ~iw  385 (401)
                      +++
T Consensus       367 ylf  369 (558)
T KOG0882|consen  367 YLF  369 (558)
T ss_pred             EEE
Confidence            887

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.84  E-value=3.4e-06  Score=75.43  Aligned_cols=194  Identities=7%  Similarity=-0.027  Sum_probs=113.2

Q ss_pred             cEEEEEEeecCCceE-EEEEeCC---CcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEE-cC--C
Q psy17342        169 PVFCMSVIGTQNAHN-LISISND---GRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVG-CE--D  241 (401)
Q Consensus       169 ~v~~~~~~~~~~~~~-l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~--d  241 (401)
                      .+..-.|  +|+++. ++..+.+   ..|.++|+.+. +......        .........|+ ||++.++.. +.  +
T Consensus       189 ~~~~p~w--SpDG~~~i~y~s~~~~~~~Iyv~dl~tg-~~~~lt~--------~~g~~~~~~~S-PDG~~la~~~~~~g~  256 (419)
T PRK04043        189 LNIFPKW--ANKEQTAFYYTSYGERKPTLYKYNLYTG-KKEKIAS--------SQGMLVVSDVS-KDGSKLLLTMAPKGQ  256 (419)
T ss_pred             CeEeEEE--CCCCCcEEEEEEccCCCCEEEEEECCCC-cEEEEec--------CCCcEEeeEEC-CCCCEEEEEEccCCC
Confidence            6677888  999984 5544443   35777787642 2222211        22345567799 788766543 33  3


Q ss_pred             ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe-CCC--eEEEEEeeCCCceEEEeecCCceEEE
Q psy17342        242 GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS-YDW--SVKLWNIKENKPVHSFNEFRDYVMDV  318 (401)
Q Consensus       242 ~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~~~~~~~~~~~v~~v  318 (401)
                      ..|+++++.+..   ...+..+........|+|+      ++.|+-.+ ..+  .|.+.|+.+++....... ...  ..
T Consensus       257 ~~Iy~~dl~~g~---~~~LT~~~~~d~~p~~SPD------G~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~  324 (419)
T PRK04043        257 PDIYLYDTNTKT---LTQITNYPGIDVNGNFVED------DKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NS  324 (419)
T ss_pred             cEEEEEECCCCc---EEEcccCCCccCccEECCC------CCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--Cc
Confidence            468888876543   2333333333345679998      55555544 333  577778876655332221 111  24


Q ss_pred             EECCCCCcEEEEEecC--------CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC-C--cEEEEEe
Q psy17342        319 QWSPINPALFATVEVA--------GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK-G--AITMFDV  387 (401)
Q Consensus       319 ~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-g--~v~iw~~  387 (401)
                      .|+|+|+.++++....        ..|.+.|+.++.... +.   . ........|+|||+.|+....+ +  .+.+.++
T Consensus       325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT---~-~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l  399 (419)
T PRK04043        325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LT---A-NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL  399 (419)
T ss_pred             eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CC---C-CCCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence            8999998655555433        368888887765322 21   1 1223358899999988766543 2  3667777


Q ss_pred             ccCc
Q psy17342        388 GEVG  391 (401)
Q Consensus       388 ~~~~  391 (401)
                      ....
T Consensus       400 ~g~~  403 (419)
T PRK04043        400 NYNK  403 (419)
T ss_pred             CCCe
Confidence            6543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.83  E-value=1.2e-05  Score=67.05  Aligned_cols=223  Identities=14%  Similarity=0.137  Sum_probs=136.5

Q ss_pred             EEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeec-CCceEEEEEeCCCcEEEeeccCC
Q psy17342        123 SCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGT-QNAHNLISISNDGRLCSWSLEML  201 (401)
Q Consensus       123 ~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~~wd~~~~  201 (401)
                      ++.|.+....++++-...+.|..|+..++.....        .... ...+.+  . +++. ++.+... .+.++|+.+.
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------~~~~-~~G~~~--~~~~g~-l~v~~~~-~~~~~d~~~g   70 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------DLPG-PNGMAF--DRPDGR-LYVADSG-GIAVVDPDTG   70 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------ESSS-EEEEEE--ECTTSE-EEEEETT-CEEEEETTTT
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------ecCC-CceEEE--EccCCE-EEEEEcC-ceEEEecCCC
Confidence            5788885557888877789999999988754211        1111 566666  5 5554 5555554 4455587642


Q ss_pred             CCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC--------ceEEEEeCCCCCCCceeeecCCCCceeeeecC
Q psy17342        202 SSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED--------GNVYSACRHGNKAGNVECYEGHEGPVVGLSSH  273 (401)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  273 (401)
                       ..........  ........+.+++. +++++.++....        |.|+.++.. .+   .......-...+.|+|+
T Consensus        71 -~~~~~~~~~~--~~~~~~~~ND~~vd-~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~---~~~~~~~~~~pNGi~~s  142 (246)
T PF08450_consen   71 -KVTVLADLPD--GGVPFNRPNDVAVD-PDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK---VTVVADGLGFPNGIAFS  142 (246)
T ss_dssp             -EEEEEEEEET--TCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE---EEEEEEEESSEEEEEEE
T ss_pred             -cEEEEeeccC--CCcccCCCceEEEc-CCCCEEEEecCCCccccccccceEEECCC-Ce---EEEEecCcccccceEEC
Confidence             1122222110  11145678899999 788866665433        567777776 22   22222234456899999


Q ss_pred             ccCCCCCCCc-EEEEEeCCCeEEEEEeeCCCc-e---EEE---eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342        274 RAQGHIDFSH-LYLTSSYDWSVKLWNIKENKP-V---HSF---NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD  345 (401)
Q Consensus       274 ~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~-~---~~~---~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~  345 (401)
                      |+      ++ ++++-+..+.|..+++..... +   ..+   ....+..-.+++..+|. +.++....+.|.++|.. +
T Consensus       143 ~d------g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G  214 (246)
T PF08450_consen  143 PD------GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-G  214 (246)
T ss_dssp             TT------SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-S
T ss_pred             Cc------chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-c
Confidence            98      55 455667788999999974332 1   122   22223478899999996 77776678999999988 6


Q ss_pred             CCCcceEEeecCCCCeEEEEec-CCCcEEEEEe
Q psy17342        346 TEVPATSAIVEGAPALSRVTWT-PNGTQLCVGD  377 (401)
Q Consensus       346 ~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~  377 (401)
                      +.+..+..  + ...+++++|. ++.+.|++.+
T Consensus       215 ~~~~~i~~--p-~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  215 KLLREIEL--P-VPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             CEEEEEE---S-SSSEEEEEEESTTSSEEEEEE
T ss_pred             cEEEEEcC--C-CCCEEEEEEECCCCCEEEEEe
Confidence            65555543  3 3478999994 6766665443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.83  E-value=1.2e-08  Score=57.61  Aligned_cols=38  Identities=24%  Similarity=0.573  Sum_probs=35.6

Q ss_pred             CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEe
Q psy17342        303 KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN  341 (401)
Q Consensus       303 ~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd  341 (401)
                      +++.++.+|.+.|++++|+|++. +|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence            57789999999999999999986 899999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2114|consensus

Probab=98.82  E-value=1.8e-06  Score=79.28  Aligned_cols=202  Identities=15%  Similarity=0.177  Sum_probs=126.5

Q ss_pred             EeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCc-EEEEEEeecCCceEEEEEeCCCc-----EEEeecc
Q psy17342        126 FAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHP-VFCMSVIGTQNAHNLISISNDGR-----LCSWSLE  199 (401)
Q Consensus       126 ~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~s~~~dg~-----i~~wd~~  199 (401)
                      |++ +...++.|+.+|.|.+.+-.-...       ..++.+... |..+..  ......|++.+.|+.     +++|+++
T Consensus        31 ~~s-~~~~vvigt~~G~V~~Ln~s~~~~-------~~fqa~~~siv~~L~~--~~~~~~L~sv~Ed~~~np~llkiw~le  100 (933)
T KOG2114|consen   31 CSS-STGSVVIGTADGRVVILNSSFQLI-------RGFQAYEQSIVQFLYI--LNKQNFLFSVGEDEQGNPVLLKIWDLE  100 (933)
T ss_pred             EcC-CCceEEEeeccccEEEecccceee-------ehheecchhhhhHhhc--ccCceEEEEEeecCCCCceEEEEeccc
Confidence            455 336888999999988877543221       123455555 444433  334467888777654     8999998


Q ss_pred             CCCCCc---cc--cccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCC--CCCCceeeecCCCCceeeeec
Q psy17342        200 MLSSPQ---ET--RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHG--NKAGNVECYEGHEGPVVGLSS  272 (401)
Q Consensus       200 ~~~~~~---~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~--~~~~~~~~~~~~~~~v~~i~~  272 (401)
                      ......   ..  ..+..........++.+++++ .+-+.+++|-.+|.|.++.-+-  ...........-..+|+.+.+
T Consensus       101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs-~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~  179 (933)
T KOG2114|consen  101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVS-EDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL  179 (933)
T ss_pred             ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEE-ccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence            642222   11  011111122356788899999 8899999999999999884221  111112222234679999999


Q ss_pred             CccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc-eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342        273 HRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP-VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT  346 (401)
Q Consensus       273 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~  346 (401)
                      ..+.      ..++-...-..|.+|.+....+ ...+..|...++|..+++....+ ++++ +..+.+||....+
T Consensus       180 ~~d~------~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qf-Ica~-~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  180 RSDG------KSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQF-ICAG-SEFLYFYDSDGRG  246 (933)
T ss_pred             ecCC------ceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccE-EEec-CceEEEEcCCCcc
Confidence            8773      3312222356799999984443 44477788899999999877534 4443 4589999987544

>KOG1832|consensus

Probab=98.82  E-value=6.2e-09  Score=95.04  Aligned_cols=213  Identities=14%  Similarity=0.216  Sum_probs=146.2

Q ss_pred             cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC--cEE
Q psy17342        117 CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG--RLC  194 (401)
Q Consensus       117 ~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~  194 (401)
                      +....+|++|+. +.+.|+.|+..|.|+++++.++...      -+..+|..+|+-+.-  +.+|..+++.+.-.  -..
T Consensus      1100 ~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e------~s~ncH~SavT~veP--s~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1100 ETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSME------ESVNCHQSAVTLVEP--SVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             cccceeeEEeec-CCceEEeeeccceEEEEEccCcccc------ccccccccccccccc--cCCcceeeeeccccCchHH
Confidence            567899999998 4589999999999999999998765      345899999999976  88888877766544  367


Q ss_pred             EeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceee-ec---CCCCceeee
Q psy17342        195 SWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVEC-YE---GHEGPVVGL  270 (401)
Q Consensus       195 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-~~---~~~~~v~~i  270 (401)
                      +|++.....+...+           ..-.++.|+ .....-+.|+......+||.....  ++.+ +.   +....-++.
T Consensus      1171 LW~~~s~~~~~Hsf-----------~ed~~vkFs-n~~q~r~~gt~~d~a~~YDvqT~~--~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSF-----------DEDKAVKFS-NSLQFRALGTEADDALLYDVQTCS--PLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred             HhccccccCccccc-----------cccceeehh-hhHHHHHhcccccceEEEecccCc--HHHHhcCcchhhhhhcccc
Confidence            89987533333332           245678888 555666777777888999987543  3333 22   122233678


Q ss_pred             ecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcc
Q psy17342        271 SSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA  350 (401)
Q Consensus       271 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  350 (401)
                      .|+|.      ..+++-   ||  .+||++..+.++.|......+ .-.|+|.|.. ++.-+     .|||+++.+.+..
T Consensus      1237 ~FsP~------D~LIln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~e-VIINS-----EIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1237 HFSPC------DTLILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNE-VIINS-----EIWDMRTFKLLHS 1298 (1516)
T ss_pred             ccCCC------cceEee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCce-EEeec-----hhhhhHHHHHHhc
Confidence            89997      355542   55  489999988888877644322 3459999974 44433     4899999776544


Q ss_pred             eEEeecCCCCeEEEEecCCCcEEEE
Q psy17342        351 TSAIVEGAPALSRVTWTPNGTQLCV  375 (401)
Q Consensus       351 ~~~~~~~~~~v~~~~~s~~g~~l~~  375 (401)
                      ...     -.-..+.|+..|..++.
T Consensus      1299 VP~-----Ldqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1299 VPS-----LDQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred             Ccc-----ccceEEEeccCccchhh
Confidence            321     11235677777776543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.82  E-value=2.5e-06  Score=76.23  Aligned_cols=209  Identities=12%  Similarity=0.084  Sum_probs=119.0

Q ss_pred             cceEEEEecCCCCC-eEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC--Ce
Q psy17342         66 RNVTYMDWSTQHPE-LLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS--GQ  142 (401)
Q Consensus        66 ~~v~~~~~~~~~~~-l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d--g~  142 (401)
                      +.+....|+|+|+. ++..++..       .+..|.++|+.+++...  .....+......|+||+..++++.+.+  ..
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~-------~~~~Iyv~dl~tg~~~~--lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~  258 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGE-------RKPTLYKYNLYTGKKEK--IASSQGMLVVSDVSKDGSKLLLTMAPKGQPD  258 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccC-------CCCEEEEEECCCCcEEE--EecCCCcEEeeEECCCCCEEEEEEccCCCcE
Confidence            45678999999986 55556411       25689999998765433  223455667789999997777766555  45


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-CC--cEEEeeccCCCCCccccccccccccCCc
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-DG--RLCSWSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                      |.++++.++...++       ..+........|  +|+|+.|+..+. .+  .|.+.|+.... ....   ..   .+. 
T Consensus       259 Iy~~dl~~g~~~~L-------T~~~~~d~~p~~--SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~-~~rl---t~---~g~-  321 (419)
T PRK04043        259 IYLYDTNTKTLTQI-------TNYPGIDVNGNF--VEDDKRIVFVSDRLGYPNIFMKKLNSGS-VEQV---VF---HGK-  321 (419)
T ss_pred             EEEEECCCCcEEEc-------ccCCCccCccEE--CCCCCEEEEEECCCCCceEEEEECCCCC-eEeC---cc---CCC-
Confidence            77778776653321       122222234467  999987776664 34  45566665321 1111   11   111 


Q ss_pred             cceEEEEeccCCCCeEEEEcCC---------ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCED---------GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY  290 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d---------~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~  290 (401)
                         ....|+ |+++.++.....         ..|++.++.+...   ..+... .......|+|+      ++.++-...
T Consensus       322 ---~~~~~S-PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~---~~LT~~-~~~~~p~~SPD------G~~I~f~~~  387 (419)
T PRK04043        322 ---NNSSVS-TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI---RRLTAN-GVNQFPRFSSD------GGSIMFIKY  387 (419)
T ss_pred             ---cCceEC-CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe---EECCCC-CCcCCeEECCC------CCEEEEEEc
Confidence               123789 788887766543         3678888765432   333322 22335789998      565555443


Q ss_pred             -CC--eEEEEEeeCCCceEEEeecCCce
Q psy17342        291 -DW--SVKLWNIKENKPVHSFNEFRDYV  315 (401)
Q Consensus       291 -d~--~i~iwd~~~~~~~~~~~~~~~~v  315 (401)
                       .+  .+.+.++. +.....+....+.+
T Consensus       388 ~~~~~~L~~~~l~-g~~~~~l~~~~g~~  414 (419)
T PRK04043        388 LGNQSALGIIRLN-YNKSFLFPLKVGKI  414 (419)
T ss_pred             cCCcEEEEEEecC-CCeeEEeecCCCcc
Confidence             23  35555553 33333444333333

>KOG1920|consensus

Probab=98.75  E-value=1.9e-05  Score=75.57  Aligned_cols=245  Identities=17%  Similarity=0.135  Sum_probs=145.5

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS  197 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd  197 (401)
                      ...|.++.|..+. +-++.+...|.|.+-|..+......       ..-...|.+++|  +|++..++..+..+++.+-+
T Consensus        68 d~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~eiv-------g~vd~GI~aasw--S~Dee~l~liT~~~tll~mT  137 (1265)
T KOG1920|consen   68 DDEIVSVQFLADT-NSICVITALGDIILVDPETLELEIV-------GNVDNGISAASW--SPDEELLALITGRQTLLFMT  137 (1265)
T ss_pred             CcceEEEEEeccc-ceEEEEecCCcEEEEcccccceeee-------eeccCceEEEee--cCCCcEEEEEeCCcEEEEEe
Confidence            3589999999876 5566667889999998877654311       334678999999  99999999999988887754


Q ss_pred             ccCC---CCCc-----------------cccccccc-------------c---ccCCccceEEEEeccCCCCeEEEE---
Q psy17342        198 LEML---SSPQ-----------------ETRDLQYN-------------N---KQTKNLAVLSLAFPQNDVNNFVVG---  238 (401)
Q Consensus       198 ~~~~---~~~~-----------------~~~~~~~~-------------~---~~~~~~~v~~~~~~~~~~~~l~~~---  238 (401)
                      -.-.   .++.                 ...++...             .   .......=+++.|- .|+.++++.   
T Consensus       138 ~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR-gDg~~fAVs~~~  216 (1265)
T KOG1920|consen  138 KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR-GDGEYFAVSFVE  216 (1265)
T ss_pred             ccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc-cCCcEEEEEEEe
Confidence            3100   0000                 00001000             0   00011222458888 899999883   


Q ss_pred             --cCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC---CCeEEEEEeeCCCceE----EEe
Q psy17342        239 --CEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY---DWSVKLWNIKENKPVH----SFN  309 (401)
Q Consensus       239 --~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~----~~~  309 (401)
                        .....|++||.++.   +-..-....+.=.+++|-|.      |.++++-..   |+.|.+|.- +|-...    .+.
T Consensus       217 ~~~~~RkirV~drEg~---Lns~se~~~~l~~~LsWkPs------gs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p  286 (1265)
T KOG1920|consen  217 SETGTRKIRVYDREGA---LNSTSEPVEGLQHSLSWKPS------GSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFP  286 (1265)
T ss_pred             ccCCceeEEEecccch---hhcccCcccccccceeecCC------CCeEeeeeecCCCCcEEEEec-CCccccccccCCc
Confidence              33378999998732   11111122333468999997      788887643   667989874 333222    233


Q ss_pred             ecCCceEEEEECCCCCcEEEE---EecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC-cEEEEEecCCcEEEE
Q psy17342        310 EFRDYVMDVQWSPINPALFAT---VEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG-TQLCVGDEKGAITMF  385 (401)
Q Consensus       310 ~~~~~v~~v~~~~~~~~~l~~---~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~iw  385 (401)
                      .....+..++|+.++. +||.   ......|++|-+.+................   +.|+|.- ..|.+-..+|...++
T Consensus       287 ~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~---~~W~p~~~~~L~v~~~sG~~~v~  362 (1265)
T KOG1920|consen  287 LDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL---LMWDPVTEKTLHVLRESGQRLVR  362 (1265)
T ss_pred             ccccchheeeecCCCC-ceeeeecccccceEEEEEecCeEEEEEEEEecccccc---ccccCCCceeEEEEecCCcEEEE
Confidence            3334489999999997 7777   445556999988765422111111221111   6677642 333333355555555


Q ss_pred             Ee
Q psy17342        386 DV  387 (401)
Q Consensus       386 ~~  387 (401)
                      ++
T Consensus       363 ~~  364 (1265)
T KOG1920|consen  363 DF  364 (1265)
T ss_pred             EE
Confidence            54

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.74  E-value=0.00014  Score=64.73  Aligned_cols=140  Identities=14%  Similarity=0.179  Sum_probs=88.9

Q ss_pred             ceEEEEeccCCCCeEEEE----cCCceE----EEEeCCCCCCCceee-ecCCCCceeeeecCccCCCCCCCcEEEEEeCC
Q psy17342        221 AVLSLAFPQNDVNNFVVG----CEDGNV----YSACRHGNKAGNVEC-YEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD  291 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~----~~d~~i----~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d  291 (401)
                      ...++.|+..++..+.+.    +.+|.+    .+|+...++.+.+.. --.....|.+++++|+      ...++.|+.|
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~------E~kLvlGC~D  280 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPS------EDKLVLGCED  280 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcc------cceEEEEecC
Confidence            335556663344444432    334443    345544333222221 1146778999999999      6999999999


Q ss_pred             CeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC-----------Ccc--eEEeecCC
Q psy17342        292 WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE-----------VPA--TSAIVEGA  358 (401)
Q Consensus       292 ~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----------~~~--~~~~~~~~  358 (401)
                      |+|.+||...+.  ..+....-..+.++|+|+|. ++++|+..|.+.+||+.-...           ...  +.....+.
T Consensus       281 gSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~  357 (545)
T PF11768_consen  281 GSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVS  357 (545)
T ss_pred             CeEEEEEcCCCe--eeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCc
Confidence            999999987553  33334456678999999997 899999999999999853211           111  11122345


Q ss_pred             CCeEEEEecCC
Q psy17342        359 PALSRVTWTPN  369 (401)
Q Consensus       359 ~~v~~~~~s~~  369 (401)
                      ..+..+.|++.
T Consensus       358 ~~L~~iqW~~~  368 (545)
T PF11768_consen  358 SSLVHIQWAPA  368 (545)
T ss_pred             chhheeEeccC
Confidence            56778888844

>KOG2066|consensus

Probab=98.72  E-value=2.5e-07  Score=83.96  Aligned_cols=152  Identities=18%  Similarity=0.276  Sum_probs=111.2

Q ss_pred             ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      ...++|++++   ...++.|+.+|.|++++...+.    .+...|...      .-.      |.++++|+.||+|.|-.
T Consensus        39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~----~~~~~~s~~------~~~------Gey~asCS~DGkv~I~s   99 (846)
T KOG2066|consen   39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP----KTNFDHSSS------ILE------GEYVASCSDDGKVVIGS   99 (846)
T ss_pred             hhHHHHHHhh---cceeeeccccceEEEEecCCcc----ccccccccc------ccC------CceEEEecCCCcEEEee
Confidence            3456777766   6899999999999999886542    233334433      222      89999999999999999


Q ss_pred             eeCCCceEEEeecCCceEEEEECCC-----CCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEE
Q psy17342        299 IKENKPVHSFNEFRDYVMDVQWSPI-----NPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQL  373 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~v~~v~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  373 (401)
                      +-+.+...++.- ..++.+|+++|+     .+ .+++||.-| +.++.-+=-...... ......++|.++.|  .|+++
T Consensus       100 l~~~~~~~~~df-~rpiksial~Pd~~~~~sk-~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W--~g~lI  173 (846)
T KOG2066|consen  100 LFTDDEITQYDF-KRPIKSIALHPDFSRQQSK-QFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW--RGNLI  173 (846)
T ss_pred             ccCCccceeEec-CCcceeEEeccchhhhhhh-heeecCcce-EEEehhhhhcCccce-eeecCccceEEEEe--cCcEE
Confidence            988888777776 568999999998     23 588898888 777654322211111 12355789999999  68889


Q ss_pred             EEEecCCcEEEEEeccCccceeeee
Q psy17342        374 CVGDEKGAITMFDVGEVGIACLKFI  398 (401)
Q Consensus       374 ~~~~~dg~v~iw~~~~~~~~~l~~~  398 (401)
                      |-++.+| |+|||+.++  +.+..+
T Consensus       174 AWand~G-v~vyd~~~~--~~l~~i  195 (846)
T KOG2066|consen  174 AWANDDG-VKVYDTPTR--QRLTNI  195 (846)
T ss_pred             EEecCCC-cEEEecccc--ceeecc
Confidence            9888888 999999987  444433

>KOG2114|consensus

Probab=98.69  E-value=4.2e-06  Score=76.87  Aligned_cols=215  Identities=13%  Similarity=0.187  Sum_probs=134.1

Q ss_pred             EecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC-----eEEEE
Q psy17342         72 DWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG-----QIVLW  146 (401)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg-----~v~iw  146 (401)
                      +|++.+..++.|+          .+|.|.+++-. -+....+.....+-|..+. .-+..++|++-..|+     .|+||
T Consensus        30 c~~s~~~~vvigt----------~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~-~~~~~~~L~sv~Ed~~~np~llkiw   97 (933)
T KOG2114|consen   30 CCSSSTGSVVIGT----------ADGRVVILNSS-FQLIRGFQAYEQSIVQFLY-ILNKQNFLFSVGEDEQGNPVLLKIW   97 (933)
T ss_pred             EEcCCCceEEEee----------ccccEEEeccc-ceeeehheecchhhhhHhh-cccCceEEEEEeecCCCCceEEEEe
Confidence            3668888888888          79988888765 2222333333223244443 333445666655554     48999


Q ss_pred             ECCCCCCC--cee----e-ccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342        147 DTRVQKKT--PVH----R-TPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       147 ~~~~~~~~--~~~----~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                      +++.....  |..    + .+........++.+++.  +.+-..++.|-.+|.|.++.=+-..........    .....
T Consensus        98 ~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~V--s~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~----~~~~~  171 (933)
T KOG2114|consen   98 DLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAV--SEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY----SHRGK  171 (933)
T ss_pred             cccccCCCCCcceeeeeeeeccCCCCCCCcceEEEE--EccccEEEEEecCcEEEEEcCcchhccccceee----eccCC
Confidence            99764221  111    1 01111224567888888  778889999999999999853321111111111    22356


Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      .+|+.+++. .++..++....-..|.+|.+.++. .....+..|..+++|..+++.      ...|++++ +.-+.+||.
T Consensus       172 ~pITgL~~~-~d~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~------t~qfIca~-~e~l~fY~s  242 (933)
T KOG2114|consen  172 EPITGLALR-SDGKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDG------TYQFICAG-SEFLYFYDS  242 (933)
T ss_pred             CCceeeEEe-cCCceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCC------CccEEEec-CceEEEEcC
Confidence            789999998 666663333334578888887655 345557788889999999987      34455555 467999999


Q ss_pred             eCCCceEEEe-ecCC
Q psy17342        300 KENKPVHSFN-EFRD  313 (401)
Q Consensus       300 ~~~~~~~~~~-~~~~  313 (401)
                      ...++-..|. +|..
T Consensus       243 d~~~~cfaf~~g~kk  257 (933)
T KOG2114|consen  243 DGRGPCFAFEVGEKK  257 (933)
T ss_pred             CCcceeeeecCCCeE
Confidence            8777777777 5544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.69  E-value=4.8e-08  Score=55.10  Aligned_cols=37  Identities=16%  Similarity=0.468  Sum_probs=34.9

Q ss_pred             ceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        256 NVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       256 ~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      ++..+.+|.++|++++|+|+      +.+|++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~------~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPD------GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETT------SSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecc------cccceeeCCCCEEEEEC
Confidence            56789999999999999999      79999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1275|consensus

Probab=98.68  E-value=6.8e-07  Score=82.38  Aligned_cols=175  Identities=13%  Similarity=0.108  Sum_probs=126.2

Q ss_pred             CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEE
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMS  174 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  174 (401)
                      -...+..+|+.+.+........ .+.|+-|+.+   .+++.+|...|+|.+-|.++.+..      -++..|.+.|.++.
T Consensus       155 ~Q~~li~~Dl~~~~e~r~~~v~-a~~v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~i------ht~~aHs~siSDfD  224 (1118)
T KOG1275|consen  155 LQEKLIHIDLNTEKETRTTNVS-ASGVTIMRYN---NRNLFCGDTRGTVFLRDPNSFETI------HTFDAHSGSISDFD  224 (1118)
T ss_pred             hhhheeeeecccceeeeeeecc-CCceEEEEec---CcEEEeecccceEEeecCCcCcee------eeeeccccceeeee
Confidence            4567778888876665544443 3357777763   378999999999999999988765      34689999999887


Q ss_pred             EeecCCceEEEEEeCC---------CcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEE
Q psy17342        175 VIGTQNAHNLISISND---------GRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVY  245 (401)
Q Consensus       175 ~~~~~~~~~l~s~~~d---------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  245 (401)
                      .    .|+.|++++..         .-|++||+++...... +.+.        ....-+.|+|.-...+++++..|...
T Consensus       225 v----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P-I~~~--------~~P~flrf~Psl~t~~~V~S~sGq~q  291 (1118)
T KOG1275|consen  225 V----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP-IQFP--------YGPQFLRFHPSLTTRLAVTSQSGQFQ  291 (1118)
T ss_pred             c----cCCeEEEeecccccccccccchhhhhhhhhhhccCC-cccc--------cCchhhhhcccccceEEEEeccccee
Confidence            6    78899998754         4478999987432211 1111        12355678876778899999999999


Q ss_pred             EEeCCCCCCCc--eeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        246 SACRHGNKAGN--VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       246 ~~~~~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      +.|..+-....  +..+......+..+.++++      ++.++.|..+|.|.+|.
T Consensus       292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn------~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSN------GDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eccccccCCCccceeEEccCCCcceeEEecCC------CceEEEecccCcEeeec
Confidence            99843322222  2233334455899999998      79999999999999997

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.64  E-value=2.8e-05  Score=69.72  Aligned_cols=258  Identities=10%  Similarity=0.023  Sum_probs=138.5

Q ss_pred             CCcEEEEEeCcCCCCCceEEEecCCCeeE-EEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccc---cccCCCCcE
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLS-CCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPL---SVMAHTHPV  170 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~---~~~~~~~~v  170 (401)
                      .++.+..+|.++++..-+....  ..+.+ ....  + ..++.++.+|.|..+|..+++..-......   .......++
T Consensus       128 ~~g~l~ald~~tG~~~W~~~~~--~~~~ssP~v~--~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~  202 (394)
T PRK11138        128 EKGQVYALNAEDGEVAWQTKVA--GEALSRPVVS--D-GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA  202 (394)
T ss_pred             CCCEEEEEECCCCCCcccccCC--CceecCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE
Confidence            6889999999988876555433  22221 1111  2 355566778999999999887643322100   000111111


Q ss_pred             EEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc-cceEEEEecc-CCCCeEEEEcCCceEEEEe
Q psy17342        171 FCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN-LAVLSLAFPQ-NDVNNFVVGCEDGNVYSAC  248 (401)
Q Consensus       171 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~-~~~~~l~~~~~d~~i~~~~  248 (401)
                          .    .+..++.++.+|.+..+|..++.. .-....... ..... .....+..+| -.+..+++++.+|.++.+|
T Consensus       203 ----v----~~~~v~~~~~~g~v~a~d~~~G~~-~W~~~~~~~-~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald  272 (394)
T PRK11138        203 ----T----AFGGAIVGGDNGRVSAVLMEQGQL-IWQQRISQP-TGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD  272 (394)
T ss_pred             ----E----ECCEEEEEcCCCEEEEEEccCChh-hheeccccC-CCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence                1    123466677788888888765321 111111100 00000 0001111111 1245677777889999999


Q ss_pred             CCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCC-ceEEEEECCCCCcE
Q psy17342        249 RHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRD-YVMDVQWSPINPAL  327 (401)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~v~~v~~~~~~~~~  327 (401)
                      ..+.+  .+-...  ......+..  .      +..++.++.++.+..+|..+++.+.+...... ...+.... ++  .
T Consensus       273 ~~tG~--~~W~~~--~~~~~~~~~--~------~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g--~  337 (394)
T PRK11138        273 LRSGQ--IVWKRE--YGSVNDFAV--D------GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-NG--Y  337 (394)
T ss_pred             CCCCC--EEEeec--CCCccCcEE--E------CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-CC--E
Confidence            87443  222211  111111221  1      45677777899999999999887654432111 11222221 33  5


Q ss_pred             EEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeE-EEEecCCCcEEEEEecCCcEEEEEe
Q psy17342        328 FATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALS-RVTWTPNGTQLCVGDEKGAITMFDV  387 (401)
Q Consensus       328 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~~~~dg~v~iw~~  387 (401)
                      ++.++.||.|...|..+++.+.....  .. ..+. ...+  .+..|++++.||.|+.+++
T Consensus       338 l~v~~~~G~l~~ld~~tG~~~~~~~~--~~-~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        338 LVVGDSEGYLHWINREDGRFVAQQKV--DS-SGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EEEEeCCCEEEEEECCCCCEEEEEEc--CC-CcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            67788899999999999876544432  21 2222 1122  2457888999999988764

>KOG3621|consensus

Probab=98.60  E-value=2.5e-05  Score=70.46  Aligned_cols=154  Identities=14%  Similarity=0.151  Sum_probs=102.8

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      ..|.--+++..+++++.|+          +-|.+++|+-..++......-...+.+..+..+++. +++|.|+..|.|.+
T Consensus        34 ~~v~lTc~dst~~~l~~Gs----------S~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v  102 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGS----------SAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSV  102 (726)
T ss_pred             ceEEEEEeecCCceEEEec----------ccceEEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEe
Confidence            4466666778889999999          899999999886654432222234556666777754 89999999999999


Q ss_pred             EECCCCCCCce-eeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342        146 WDTRVQKKTPV-HRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS  224 (401)
Q Consensus       146 w~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (401)
                      +-++....... +-.+. -..|...|++++|  ++++..+++|...|+|.+-.+...    ..+.............|-.
T Consensus       103 ~ql~~~~p~~~~~~t~~-d~~~~~rVTal~W--s~~~~k~ysGD~~Gkv~~~~L~s~----~~~~~~~q~il~~ds~IVQ  175 (726)
T KOG3621|consen  103 FQLNKELPRDLDYVTPC-DKSHKCRVTALEW--SKNGMKLYSGDSQGKVVLTELDSR----QAFLSKSQEILSEDSEIVQ  175 (726)
T ss_pred             ehhhccCCCcceeeccc-cccCCceEEEEEe--cccccEEeecCCCceEEEEEechh----hhhccccceeeccCcceEE
Confidence            98877433221 11111 2358899999999  999999999999999999888751    1111111112224556777


Q ss_pred             EEeccCCCCeEEEEcC
Q psy17342        225 LAFPQNDVNNFVVGCE  240 (401)
Q Consensus       225 ~~~~~~~~~~l~~~~~  240 (401)
                      +.+.   ..+|++++.
T Consensus       176 lD~~---q~~LLVStl  188 (726)
T KOG3621|consen  176 LDYL---QSYLLVSTL  188 (726)
T ss_pred             eecc---cceehHhhh
Confidence            7765   234444443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.59  E-value=0.00012  Score=60.82  Aligned_cols=233  Identities=12%  Similarity=0.143  Sum_probs=137.5

Q ss_pred             CCeeEEEEeCCCCceEEEEecCCe-EEEEECCCCCCCceeecc--ccccCCCCcEEEEEEeecCCceEEEEEeC-----C
Q psy17342        119 SPVLSCCFAKFNPYLILGGTYSGQ-IVLWDTRVQKKTPVHRTP--LSVMAHTHPVFCMSVIGTQNAHNLISISN-----D  190 (401)
Q Consensus       119 ~~v~~~~~~~~~~~~l~~g~~dg~-v~iw~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----d  190 (401)
                      .....++.+|..+..++.+-.-|+ ..+||..+++.......+  ..+.+|.      .|  +++|.+|++.-.     .
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg------~f--s~dG~~LytTEnd~~~g~   76 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHG------VF--SPDGRLLYTTENDYETGR   76 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCE------EE--cCCCCEEEEeccccCCCc
Confidence            345677888876677777766665 678898887764332211  1233442      45  899999998643     5


Q ss_pred             CcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC------------------CceEEEEeCCCC
Q psy17342        191 GRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE------------------DGNVYSACRHGN  252 (401)
Q Consensus       191 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------------d~~i~~~~~~~~  252 (401)
                      |.|-+||...  .....-+...     +.-..-.+.+. +++..|+++..                  +.++...|..+ 
T Consensus        77 G~IgVyd~~~--~~~ri~E~~s-----~GIGPHel~l~-pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s-  147 (305)
T PF07433_consen   77 GVIGVYDAAR--GYRRIGEFPS-----HGIGPHELLLM-PDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS-  147 (305)
T ss_pred             EEEEEEECcC--CcEEEeEecC-----CCcChhhEEEc-CCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC-
Confidence            7899999972  2223323222     44445566677 78877777621                  22233333332 


Q ss_pred             CCCceee--e--cCCCCceeeeecCccCCCCCCCcEEEEEeCCCe-----EEEEEeeCCCceEEEee-------cCCceE
Q psy17342        253 KAGNVEC--Y--EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWS-----VKLWNIKENKPVHSFNE-------FRDYVM  316 (401)
Q Consensus       253 ~~~~~~~--~--~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~-----i~iwd~~~~~~~~~~~~-------~~~~v~  316 (401)
                       ...+..  +  .-|...|.-+++.++      +..++..-..+.     -.+.-.+.++.+..+..       -.+.+-
T Consensus       148 -G~ll~q~~Lp~~~~~lSiRHLa~~~~------G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~g  220 (305)
T PF07433_consen  148 -GALLEQVELPPDLHQLSIRHLAVDGD------GTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIG  220 (305)
T ss_pred             -CceeeeeecCccccccceeeEEecCC------CcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceE
Confidence             223333  3  236677888888887      444443332221     11222223333333322       346789


Q ss_pred             EEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcE
Q psy17342        317 DVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAI  382 (401)
Q Consensus       317 ~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  382 (401)
                      +|++++++..+.+++=..+.+.+||..++..+.....     ..+..++-.+++ ++++.+ .|.+
T Consensus       221 SIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-----~D~cGva~~~~~-f~~ssG-~G~~  279 (305)
T PF07433_consen  221 SIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-----PDACGVAPTDDG-FLVSSG-QGQL  279 (305)
T ss_pred             EEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-----CceeeeeecCCc-eEEeCC-CccE
Confidence            9999999986667777789999999999887655432     235566666666 555544 3443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.59  E-value=8.5e-05  Score=66.64  Aligned_cols=261  Identities=12%  Similarity=0.062  Sum_probs=139.8

Q ss_pred             CCcEEEEEeCcCCCCCceEEEecCC---------Ce-eEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecccccc
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFCQS---------PV-LSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVM  164 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~~~---------~v-~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~  164 (401)
                      .++.+.-+|.++++.+=+.......         .+ ..+...  + ..++.++.+|.+..+|.++++..-....     
T Consensus        77 ~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~--~-~~v~v~~~~g~l~ald~~tG~~~W~~~~-----  148 (394)
T PRK11138         77 RAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA--G-GKVYIGSEKGQVYALNAEDGEVAWQTKV-----  148 (394)
T ss_pred             CCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE--C-CEEEEEcCCCEEEEEECCCCCCcccccC-----
Confidence            5788888888877655443332110         00 011221  3 3566677899999999998886533221     


Q ss_pred             CCCCcEEE-EEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccc--cCCccceEEEEeccCCCCeEEEEcCC
Q psy17342        165 AHTHPVFC-MSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNK--QTKNLAVLSLAFPQNDVNNFVVGCED  241 (401)
Q Consensus       165 ~~~~~v~~-~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d  241 (401)
                       . +.+.+ ...    .+..++.++.++.+..+|..++.. .-.........  .....+    ..   .+..+++++.+
T Consensus       149 -~-~~~~ssP~v----~~~~v~v~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~~~~~sP----~v---~~~~v~~~~~~  214 (394)
T PRK11138        149 -A-GEALSRPVV----SDGLVLVHTSNGMLQALNESDGAV-KWTVNLDVPSLTLRGESAP----AT---AFGGAIVGGDN  214 (394)
T ss_pred             -C-CceecCCEE----ECCEEEEECCCCEEEEEEccCCCE-eeeecCCCCcccccCCCCC----EE---ECCEEEEEcCC
Confidence             1 12221 111    234566777888899888876332 11111110000  000111    11   12457778888


Q ss_pred             ceEEEEeCCCCCCCceeeecC--CC--C---ceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCc
Q psy17342        242 GNVYSACRHGNKAGNVECYEG--HE--G---PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDY  314 (401)
Q Consensus       242 ~~i~~~~~~~~~~~~~~~~~~--~~--~---~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  314 (401)
                      |.++.+|..+.+.  +-....  ..  .   ....+..+|.-.    +..++.++.++.+..+|..+++.+.+...  ..
T Consensus       215 g~v~a~d~~~G~~--~W~~~~~~~~~~~~~~~~~~~~~sP~v~----~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~  286 (394)
T PRK11138        215 GRVSAVLMEQGQL--IWQQRISQPTGATEIDRLVDVDTTPVVV----GGVVYALAYNGNLVALDLRSGQIVWKREY--GS  286 (394)
T ss_pred             CEEEEEEccCChh--hheeccccCCCccchhcccccCCCcEEE----CCEEEEEEcCCeEEEEECCCCCEEEeecC--CC
Confidence            9888888764332  212110  00  0   011122233110    35666677799999999999987765432  11


Q ss_pred             eEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCcc
Q psy17342        315 VMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGI  392 (401)
Q Consensus       315 v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~  392 (401)
                      ...+..  .+. .++.++.+|.+..+|..+++.+..... .. .....+...  .+..|+.++.+|.|++.|..++++
T Consensus       287 ~~~~~~--~~~-~vy~~~~~g~l~ald~~tG~~~W~~~~-~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~  357 (394)
T PRK11138        287 VNDFAV--DGG-RIYLVDQNDRVYALDTRGGVELWSQSD-LL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRF  357 (394)
T ss_pred             ccCcEE--ECC-EEEEEcCCCeEEEEECCCCcEEEcccc-cC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence            112222  233 456677899999999998875433211 01 111111112  255678899999999999998853

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.59  E-value=0.00016  Score=64.41  Aligned_cols=90  Identities=19%  Similarity=0.319  Sum_probs=68.1

Q ss_pred             EEEEEeeCCCceE----EEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC
Q psy17342        294 VKLWNIKENKPVH----SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN  369 (401)
Q Consensus       294 i~iwd~~~~~~~~----~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  369 (401)
                      -.+|+....+...    ++ .....+.+++++|+.. .++.|+.||.|.+||...+...  .   ....-..+.++|+|+
T Consensus       238 ~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~t~--~---~ka~~~P~~iaWHp~  310 (545)
T PF11768_consen  238 SCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSED-KLVLGCEDGSIILYDTTRGVTL--L---AKAEFIPTLIAWHPD  310 (545)
T ss_pred             EEEEEeecCceeEEEEEEE-ecCCcceEEecCcccc-eEEEEecCCeEEEEEcCCCeee--e---eeecccceEEEEcCC
Confidence            3456665443221    12 2567899999999997 6888999999999999765321  1   123455788999999


Q ss_pred             CcEEEEEecCCcEEEEEeccC
Q psy17342        370 GTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       370 g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      |.++++|+..|.+.+||+.-+
T Consensus       311 gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  311 GAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             CcEEEEEcCCceEEEEEeecC
Confidence            999999999999999999754

>KOG1008|consensus

Probab=98.58  E-value=3.6e-08  Score=87.05  Aligned_cols=209  Identities=11%  Similarity=0.129  Sum_probs=137.3

Q ss_pred             cceEEEEecCCCC-CeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC-ceEEEecCCCeeEEEEeCCCCceEEEEe----c
Q psy17342         66 RNVTYMDWSTQHP-ELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT-PEFEFFCQSPVLSCCFAKFNPYLILGGT----Y  139 (401)
Q Consensus        66 ~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~g~----~  139 (401)
                      ..+.|+++.-+.. .|++++         ..+|.|.+-......-. .++..++....++++|++-..+.||+|-    .
T Consensus        57 qy~kcva~~y~~d~cIlavG---------~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrn  127 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVG---------SATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRN  127 (783)
T ss_pred             CCceeehhhcCCchhhhhhc---------cccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcc
Confidence            4577877765443 344444         27899999888753322 4555567789999999998777888873    3


Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                      |..+.|||+.+.-..|.....+. .+......+++|  ..+.+++++|.....+.++|++..  ......+       .+
T Consensus       128 ds~~~Iwdi~s~ltvPke~~~fs-~~~l~gqns~cw--lrd~klvlaGm~sr~~~ifdlRqs--~~~~~sv-------nT  195 (783)
T KOG1008|consen  128 DSSLKIWDINSLLTVPKESPLFS-SSTLDGQNSVCW--LRDTKLVLAGMTSRSVHIFDLRQS--LDSVSSV-------NT  195 (783)
T ss_pred             cCCccceecccccCCCccccccc-cccccCcccccc--ccCcchhhcccccchhhhhhhhhh--hhhhhhh-------hh
Confidence            56799999988743332221111 123445568888  678888999999999999999831  1111111       23


Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCC----ceeeeecCccCCCCCCCcEEEEEeC-CCeE
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEG----PVVGLSSHRAQGHIDFSHLYLTSSY-DWSV  294 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~----~v~~i~~~~~~~~~~~~~~l~s~~~-d~~i  294 (401)
                      ..+..+.+.|-.++++++-. ||.|.+||...+-..++........    .+..++|+|..     ..++++... .++|
T Consensus       196 k~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr-----tglla~l~RdS~tI  269 (783)
T KOG1008|consen  196 KYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR-----TGLLAVLSRDSITI  269 (783)
T ss_pred             hhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC-----cchhhhhccCcceE
Confidence            35667778855778877665 9999999942222223333332222    48999999986     456666665 5689


Q ss_pred             EEEEeeC
Q psy17342        295 KLWNIKE  301 (401)
Q Consensus       295 ~iwd~~~  301 (401)
                      +++|+..
T Consensus       270 rlydi~~  276 (783)
T KOG1008|consen  270 RLYDICV  276 (783)
T ss_pred             EEecccc
Confidence            9999853

>KOG1920|consensus

Probab=98.57  E-value=4.3e-05  Score=73.24  Aligned_cols=244  Identities=11%  Similarity=0.099  Sum_probs=143.3

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      +.|.++.|..+...++.+.          ..|.|.+-|.++....  ....-...|.+++|+||. .+++..+..+++.+
T Consensus        69 ~~i~s~~fl~d~~~i~v~~----------~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~De-e~l~liT~~~tll~  135 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVIT----------ALGDIILVDPETLELE--IVGNVDNGISAASWSPDE-ELLALITGRQTLLF  135 (1265)
T ss_pred             cceEEEEEecccceEEEEe----------cCCcEEEEccccccee--eeeeccCceEEEeecCCC-cEEEEEeCCcEEEE
Confidence            6799999999998888888          7899999988754322  333347899999999987 66666666666665


Q ss_pred             EECC----CCCCC---------ce----eeccccccC---------------------CCCcEEEEEEeecCCceEEEEE
Q psy17342        146 WDTR----VQKKT---------PV----HRTPLSVMA---------------------HTHPVFCMSVIGTQNAHNLISI  187 (401)
Q Consensus       146 w~~~----~~~~~---------~~----~~~~~~~~~---------------------~~~~v~~~~~~~~~~~~~l~s~  187 (401)
                      -...    ..+..         .+    .+....+.+                     -.+.=.++.|  .-+|.++++.
T Consensus       136 mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsW--RgDg~~fAVs  213 (1265)
T KOG1920|consen  136 MTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISW--RGDGEYFAVS  213 (1265)
T ss_pred             EeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEE--ccCCcEEEEE
Confidence            4321    11000         00    000001110                     0111235888  7789888873


Q ss_pred             -----eCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEE---cCCceEEEEeCCCCCCC-cee
Q psy17342        188 -----SNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVG---CEDGNVYSACRHGNKAG-NVE  258 (401)
Q Consensus       188 -----~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~d~~i~~~~~~~~~~~-~~~  258 (401)
                           ..-..|++||-+.  .....-       ......-.+++|- |.|..+++-   +.++.|.++..++-... ...
T Consensus       214 ~~~~~~~~RkirV~drEg--~Lns~s-------e~~~~l~~~LsWk-Psgs~iA~iq~~~sd~~IvffErNGL~hg~f~l  283 (1265)
T KOG1920|consen  214 FVESETGTRKIRVYDREG--ALNSTS-------EPVEGLQHSLSWK-PSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVL  283 (1265)
T ss_pred             EEeccCCceeEEEecccc--hhhccc-------Ccccccccceeec-CCCCeEeeeeecCCCCcEEEEecCCcccccccc
Confidence                 2237899999762  111111       1122334578999 688887765   44567999987654322 222


Q ss_pred             eecCCCCceeeeecCccCCCCCCCcEEEE---EeCCCeEEEEEeeCCC--ceEEEeecCCceEEEEECCCCCcEEEEEec
Q psy17342        259 CYEGHEGPVVGLSSHRAQGHIDFSHLYLT---SSYDWSVKLWNIKENK--PVHSFNEFRDYVMDVQWSPINPALFATVEV  333 (401)
Q Consensus       259 ~~~~~~~~v~~i~~~~~~~~~~~~~~l~s---~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~  333 (401)
                      .+.....+|..++|+.+      +..|+.   ......|++|-+.+-.  ..+.+.......  +.|+|....-+..-..
T Consensus       284 ~~p~de~~ve~L~Wns~------sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~  355 (1265)
T KOG1920|consen  284 PFPLDEKEVEELAWNSN------SDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRE  355 (1265)
T ss_pred             CCcccccchheeeecCC------CCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEec
Confidence            23444556999999998      688887   4545569999876531  112222212222  6666654433333334


Q ss_pred             CCEEEEEeC
Q psy17342        334 AGRVDLWNL  342 (401)
Q Consensus       334 d~~i~iwd~  342 (401)
                      +|...++|+
T Consensus       356 sG~~~v~~~  364 (1265)
T KOG1920|consen  356 SGQRLVRDF  364 (1265)
T ss_pred             CCcEEEEEE
Confidence            555555443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.55  E-value=0.00032  Score=62.73  Aligned_cols=230  Identities=7%  Similarity=0.068  Sum_probs=117.9

Q ss_pred             EEecCCCCCeEEEEeccCCCCCCCCCc-EEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECC
Q psy17342         71 MDWSTQHPELLLASYHRNKEAPNEPDG-VCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTR  149 (401)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~~~~~d~-~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~  149 (401)
                      ++.+|.|.-+|...-.......+.... .|.||+.. |+.+..+.... +.+.++.|..+. .+++. ..||.++++|+.
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~-~~iv~~~wt~~e-~LvvV-~~dG~v~vy~~~  109 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDS-GRIVGMGWTDDE-ELVVV-QSDGTVRVYDLF  109 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECC-CCEEEEEECCCC-eEEEE-EcCCEEEEEeCC
Confidence            455666666665541100000001122 69999988 66677776665 899999998843 55554 589999999986


Q ss_pred             CCCCCceeeccc-cccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccc---ccccccccCC-ccceEE
Q psy17342        150 VQKKTPVHRTPL-SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETR---DLQYNNKQTK-NLAVLS  224 (401)
Q Consensus       150 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~~~~~~-~~~v~~  224 (401)
                      ... ........ ........+....+  ..+|-.++  ..++.+.+.  .....+....   ..+......+ ......
T Consensus       110 G~~-~fsl~~~i~~~~v~e~~i~~~~~--~~~GivvL--t~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~  182 (410)
T PF04841_consen  110 GEF-QFSLGEEIEEEKVLECRIFAIWF--YKNGIVVL--TGNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTV  182 (410)
T ss_pred             Cce-eechhhhccccCccccccccccc--CCCCEEEE--CCCCeEEEE--eCccccchhhccccCCCccccccccccccc
Confidence            443 11000000 01112222333333  33453333  334444333  2212221111   1111000000 001111


Q ss_pred             -EEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC
Q psy17342        225 -LAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK  303 (401)
Q Consensus       225 -~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  303 (401)
                       ..++ .+....+....++.+++.+....     ..+. ..+++..++++|+      ++++|.-..+|.+.+.+..-.+
T Consensus       183 i~~l~-~~~~~~i~~~~g~~i~~i~~~~~-----~~i~-~~~~i~~iavSpn------g~~iAl~t~~g~l~v~ssDf~~  249 (410)
T PF04841_consen  183 IPLLS-SDRVVEILLANGETIYIIDENSF-----KQID-SDGPIIKIAVSPN------GKFIALFTDSGNLWVVSSDFSE  249 (410)
T ss_pred             ceEee-cCcceEEEEecCCEEEEEEcccc-----cccc-CCCCeEEEEECCC------CCEEEEEECCCCEEEEECcccc
Confidence             1233 34444445555566664443311     0111 3468999999999      7899999989999998876666


Q ss_pred             ceEEEeec-CCceEEEEECCCC
Q psy17342        304 PVHSFNEF-RDYVMDVQWSPIN  324 (401)
Q Consensus       304 ~~~~~~~~-~~~v~~v~~~~~~  324 (401)
                      .+.++... ......+.|.-+.
T Consensus       250 ~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  250 KLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             eeEEeecCcCCCCcEEEEECCC
Confidence            66666653 3455677777664

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.54  E-value=2.7e-05  Score=64.64  Aligned_cols=221  Identities=13%  Similarity=0.010  Sum_probs=120.8

Q ss_pred             CcEEEEEeCcCCCCCceEEEec-CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEE
Q psy17342         96 DGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMS  174 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  174 (401)
                      +|.|..+|..+++.+-+..+.. .....+... +++ ..+++++.++.|..||..+++........   ......   . 
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~-~~v~~~~~~~~l~~~d~~tG~~~W~~~~~---~~~~~~---~-   72 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDG-GRVYVASGDGNLYALDAKTGKVLWRFDLP---GPISGA---P-   72 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EET-TEEEEEETTSEEEEEETTTSEEEEEEECS---SCGGSG---E-
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeC-CEEEEEcCCCEEEEEECCCCCEEEEeecc---ccccce---e-
Confidence            6889999998887776554432 122222222 224 45666678999999999888754332211   011111   1 


Q ss_pred             EeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCC
Q psy17342        175 VIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKA  254 (401)
Q Consensus       175 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~  254 (401)
                         ...+..++.++.++.+..+|..++...-.......   .... ........ ..+..++++..++.|+.+|....+ 
T Consensus        73 ---~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~---~~~~-~~~~~~~~-~~~~~~~~~~~~g~l~~~d~~tG~-  143 (238)
T PF13360_consen   73 ---VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS---PPAG-VRSSSSPA-VDGDRLYVGTSSGKLVALDPKTGK-  143 (238)
T ss_dssp             ---EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS---CTCS-TB--SEEE-EETTEEEEEETCSEEEEEETTTTE-
T ss_pred             ---eecccccccccceeeeEecccCCcceeeeeccccc---cccc-cccccCce-EecCEEEEEeccCcEEEEecCCCc-
Confidence               12344566666888899998766332111011110   0000 11111122 236788888889999999987443 


Q ss_pred             CceeeecCCCCc----e-------eeeecCccCCCCCCCcEEEEEeCCCe-EEEEEeeCCCceEEEeecCCceEEEEECC
Q psy17342        255 GNVECYEGHEGP----V-------VGLSSHRAQGHIDFSHLYLTSSYDWS-VKLWNIKENKPVHSFNEFRDYVMDVQWSP  322 (401)
Q Consensus       255 ~~~~~~~~~~~~----v-------~~i~~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  322 (401)
                       .+..+.....+    +       ..+.+. .      + .+..++.++. +.+ |+.+++.+.+..  ...+..+ ..+
T Consensus       144 -~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~  210 (238)
T PF13360_consen  144 -LLWKYPVGEPRGSSPISSFSDINGSPVIS-D------G-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSV  210 (238)
T ss_dssp             -EEEEEESSTT-SS--EEEETTEEEEEECC-T------T-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EEC
T ss_pred             -EEEEeecCCCCCCcceeeecccccceEEE-C------C-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC-cee
Confidence             44444332211    1       122222 1      3 5555666775 555 999988664333  2333332 345


Q ss_pred             CCCcEEEEEecCCEEEEEeCCCCCCC
Q psy17342        323 INPALFATVEVAGRVDLWNLNLDTEV  348 (401)
Q Consensus       323 ~~~~~l~~~~~d~~i~iwd~~~~~~~  348 (401)
                      .+. .++.++.++.|..||+++++..
T Consensus       211 ~~~-~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  211 DGG-TLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             CCT-EEEEEETTTEEEEEETTTTEEE
T ss_pred             eCC-EEEEEeCCCEEEEEECCCCCEE
Confidence            555 4566668999999999998743

...

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.52  E-value=6.8e-06  Score=72.28  Aligned_cols=295  Identities=16%  Similarity=0.148  Sum_probs=141.3

Q ss_pred             ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEE
Q psy17342         67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLW  146 (401)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw  146 (401)
                      .|+++.|+++...|+++.          ..|.|.||.+...+...   .....+-..+.+.+..       ..++.-.+-
T Consensus         3 ~v~~vs~a~~t~Elav~~----------~~GeVv~~k~~~n~~~~---~~~~~~~~~~~~~~~~-------~~~~~~~l~   62 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGL----------ESGEVVLFKFGKNQNYG---NREQPPDLDYNFRRFS-------LNNSPGKLT   62 (395)
T ss_dssp             -EEEEEEETTTTEEEEEE----------TTS-EEEEEEEE---------------------S---------GGGSS-SEE
T ss_pred             eEEEEEecCCCceEEEEc----------cCCcEEEEEcccCCCCC---ccCCCcccCccccccc-------ccCCCcceE
Confidence            489999999988999998          79999999998644332   0111122222222211       122233444


Q ss_pred             ECCCCCC---CceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccc---cccCCcc
Q psy17342        147 DTRVQKK---TPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYN---NKQTKNL  220 (401)
Q Consensus       147 ~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~---~~~~~~~  220 (401)
                      |+.....   ..-+....-+....++|++++.  + +-.+++.|..+|.+.+.|++.   |...+.....   .......
T Consensus        63 di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~--S-~iGFvaigy~~G~l~viD~RG---PavI~~~~i~~~~~~~~~~~  136 (395)
T PF08596_consen   63 DISDRAPPSLKEGFLPLTLLDAKQGPVTALKN--S-DIGFVAIGYESGSLVVIDLRG---PAVIYNENIRESFLSKSSSS  136 (395)
T ss_dssp             E-GGG--TT-SEEEEEEEEE---S-SEEEEEE----BTSEEEEEETTSEEEEEETTT---TEEEEEEEGGG--T-SS---
T ss_pred             EehhhCCcccccccCchhheeccCCcEeEEec--C-CCcEEEEEecCCcEEEEECCC---CeEEeecccccccccccccc
Confidence            5443211   1111111223455899999997  4 666899999999999999974   2222211100   0122445


Q ss_pred             ceEEEEecc----CCC---CeEEEEcCCceEEEEeCCCC-CCCc----eeeecCCCCceeeee-cCccCCCC--------
Q psy17342        221 AVLSLAFPQ----NDV---NNFVVGCEDGNVYSACRHGN-KAGN----VECYEGHEGPVVGLS-SHRAQGHI--------  279 (401)
Q Consensus       221 ~v~~~~~~~----~~~---~~l~~~~~d~~i~~~~~~~~-~~~~----~~~~~~~~~~v~~i~-~~~~~~~~--------  279 (401)
                      .++++.|.-    .|+   -.+++|+..|.+.+|.+... ....    ......+.++|..|. ++.+.+.+        
T Consensus       137 ~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~  216 (395)
T PF08596_consen  137 YVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAM  216 (395)
T ss_dssp             -EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHH
T ss_pred             CeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHh
Confidence            677777751    222   46889999999999977521 1111    111123455555443 21111110        


Q ss_pred             -------CCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECC----CCCcEEEEEecCCEEEEEeCCCCCCC
Q psy17342        280 -------DFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP----INPALFATVEVAGRVDLWNLNLDTEV  348 (401)
Q Consensus       280 -------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~----~~~~~l~~~~~d~~i~iwd~~~~~~~  348 (401)
                             ....+++.++ +..+|++...+.+..+...........+.+-+    .+...|++-..+|.+++|.+..-+.+
T Consensus       217 ~~l~~g~~i~g~vVvvS-e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei  295 (395)
T PF08596_consen  217 QGLSKGISIPGYVVVVS-ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI  295 (395)
T ss_dssp             HGGGGT----EEEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred             hccccCCCcCcEEEEEc-ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence                   0023455544 78899999887776655443222333445531    22347888889999999999887665


Q ss_pred             cceEEeec-CCCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        349 PATSAIVE-GAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       349 ~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      ........ ....+....++++|..++-.+.. .+.++.+-.
T Consensus       296 ~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps-E~~l~sv~~  336 (395)
T PF08596_consen  296 KSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS-EIQLFSVWG  336 (395)
T ss_dssp             EEEE-SS---HHHHTT-EE-TTS-EEEE-SSS-EEEEEEEES
T ss_pred             hcccCCCccccccccccEECCCCCEEEEeCcc-cEEEEEEEc
Confidence            55443211 11234557778999877666543 355555543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.51  E-value=3.2e-05  Score=64.15  Aligned_cols=217  Identities=16%  Similarity=0.082  Sum_probs=123.9

Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                      +|.|..||..+++..-....  . ......+. ..   .+++..+++++.++.|..||..++. ......+..     ..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~--~-~~~~~~~~-~~---~~~~~~v~~~~~~~~l~~~d~~tG~-~~W~~~~~~-----~~   68 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDL--G-PGIGGPVA-TA---VPDGGRVYVASGDGNLYALDAKTGK-VLWRFDLPG-----PI   68 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEEC--S-SSCSSEEE-TE---EEETTEEEEEETTSEEEEEETTTSE-EEEEEECSS-----CG
T ss_pred             CCEEEEEECCCCCEEEEEEC--C-CCCCCccc-eE---EEeCCEEEEEcCCCEEEEEECCCCC-EEEEeeccc-----cc
Confidence            67888888887765433211  0 01222221 12   2355667777899999999987632 222222211     10


Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceee-ecCCCC---ceeeeecCccCCCCCCCcEEEEEeCCCeEE
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVEC-YEGHEG---PVVGLSSHRAQGHIDFSHLYLTSSYDWSVK  295 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-~~~~~~---~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~  295 (401)
                      ...  ..   ..+..+++++.++.++.+|....+  .+.. ......   ..........      +..++.+..++.|.
T Consensus        69 ~~~--~~---~~~~~v~v~~~~~~l~~~d~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~g~l~  135 (238)
T PF13360_consen   69 SGA--PV---VDGGRVYVGTSDGSLYALDAKTGK--VLWSIYLTSSPPAGVRSSSSPAVD------GDRLYVGTSSGKLV  135 (238)
T ss_dssp             GSG--EE---EETTEEEEEETTSEEEEEETTTSC--EEEEEEE-SSCTCSTB--SEEEEE------TTEEEEEETCSEEE
T ss_pred             cce--ee---ecccccccccceeeeEecccCCcc--eeeeeccccccccccccccCceEe------cCEEEEEeccCcEE
Confidence            111  11   245667777788899999976433  3444 222211   1111222222      46778888899999


Q ss_pred             EEEeeCCCceEEEeecCCc----------e-EEEEECCCCCcEEEEEecCCE-EEEEeCCCCCCCcceEEeecCCCCeEE
Q psy17342        296 LWNIKENKPVHSFNEFRDY----------V-MDVQWSPINPALFATVEVAGR-VDLWNLNLDTEVPATSAIVEGAPALSR  363 (401)
Q Consensus       296 iwd~~~~~~~~~~~~~~~~----------v-~~v~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~v~~  363 (401)
                      .+|+++|+.+.........          + ..+.+. ++  .+..++.++. +.+ |+.+++.+  ....   ...+..
T Consensus       136 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~g~~~~~-d~~tg~~~--w~~~---~~~~~~  206 (238)
T PF13360_consen  136 ALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG--RVYVSSGDGRVVAV-DLATGEKL--WSKP---ISGIYS  206 (238)
T ss_dssp             EEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT--EEEEECCTSSEEEE-ETTTTEEE--EEEC---SS-ECE
T ss_pred             EEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC--EEEEEcCCCeEEEE-ECCCCCEE--EEec---CCCccC
Confidence            9999999998887763322          1 223333 44  3444555664 666 99988743  2221   122222


Q ss_pred             EEecCCCcEEEEEecCCcEEEEEeccCcc
Q psy17342        364 VTWTPNGTQLCVGDEKGAITMFDVGEVGI  392 (401)
Q Consensus       364 ~~~s~~g~~l~~~~~dg~v~iw~~~~~~~  392 (401)
                       ....++..|++++.++.|..||+++++.
T Consensus       207 -~~~~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  207 -LPSVDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             -CEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             -CceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence             1346778888888999999999999963

...

>KOG1832|consensus

Probab=98.48  E-value=3.1e-07  Score=84.41  Aligned_cols=214  Identities=14%  Similarity=0.083  Sum_probs=138.9

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC-e
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG-Q  142 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg-~  142 (401)
                      |+...+|++|+-+.+.|+.|+          ..|.|++|++.+|...... ..|.++|+-+.-+.+|..+|.+.+... -
T Consensus      1100 ~~~~fTc~afs~~~~hL~vG~----------~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGS----------HAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred             cccceeeEEeecCCceEEeee----------ccceEEEEEccCccccccc-cccccccccccccCCcceeeeeccccCch
Confidence            458899999999999999999          6999999999988766543 457899999999998866665554444 5


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      ..+|+..+.-. +        ...-..-.++.|  +.....-+.|..-....+||+.+.......+.-.    .+....-
T Consensus      1169 saLW~~~s~~~-~--------~Hsf~ed~~vkF--sn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~----~~~~y~~ 1233 (1516)
T KOG1832|consen 1169 SALWDASSTGG-P--------RHSFDEDKAVKF--SNSLQFRALGTEADDALLYDVQTCSPLQTYLTDT----VTSSYSN 1233 (1516)
T ss_pred             HHHhccccccC-c--------cccccccceeeh--hhhHHHHHhcccccceEEEecccCcHHHHhcCcc----hhhhhhc
Confidence            77999876221 1        111223457777  4444444445555678999998744333222111    1122223


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN  302 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  302 (401)
                      .+..|+ |...+++   .||  .+||.+..  +.++.|......+ .-.|+|.      +..++.-+     .|||+++.
T Consensus      1234 n~a~Fs-P~D~LIl---ndG--vLWDvR~~--~aIh~FD~ft~~~-~G~FHP~------g~eVIINS-----EIwD~RTF 1293 (1516)
T KOG1832|consen 1234 NLAHFS-PCDTLIL---NDG--VLWDVRIP--EAIHRFDQFTDYG-GGGFHPS------GNEVIINS-----EIWDMRTF 1293 (1516)
T ss_pred             cccccC-CCcceEe---eCc--eeeeeccH--HHHhhhhhheecc-cccccCC------CceEEeec-----hhhhhHHH
Confidence            677888 5555554   244  36998743  3455554333222 3368898      66666655     38999999


Q ss_pred             CceEEEeecCCceEEEEECCCCC
Q psy17342        303 KPVHSFNEFRDYVMDVQWSPINP  325 (401)
Q Consensus       303 ~~~~~~~~~~~~v~~v~~~~~~~  325 (401)
                      +.++....-.  -..|.|+..|.
T Consensus      1294 ~lLh~VP~Ld--qc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1294 KLLHSVPSLD--QCAVTFNSTGD 1314 (1516)
T ss_pred             HHHhcCcccc--ceEEEeccCcc
Confidence            8888766432  35788988886

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.47  E-value=6.9e-05  Score=66.00  Aligned_cols=271  Identities=10%  Similarity=0.001  Sum_probs=137.8

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-------c---------CCCeeEEEEeCC
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-------C---------QSPVLSCCFAKF  129 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-------~---------~~~v~~~~~~~~  129 (401)
                      ..+....|||+|+.++...           ++.|.+++..++...+....+       -         -+.-..+-|||+
T Consensus        43 ~~~~~~~~sP~g~~~~~v~-----------~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd  111 (353)
T PF00930_consen   43 PKLQDAKWSPDGKYIAFVR-----------DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPD  111 (353)
T ss_dssp             TTBSEEEE-SSSTEEEEEE-----------TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TT
T ss_pred             cccccceeecCCCeeEEEe-----------cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCC
Confidence            5688899999999999888           899999998755222111101       0         123467889999


Q ss_pred             CCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccc
Q psy17342        130 NPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRD  209 (401)
Q Consensus       130 ~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~  209 (401)
                      +..+++.--.+..|..+.+.......         .-...+..+.+  ..-|......    .+.++|+......  .+.
T Consensus       112 ~~~la~~~~d~~~v~~~~~~~~~~~~---------~~yp~~~~~~Y--Pk~G~~np~v----~l~v~~~~~~~~~--~~~  174 (353)
T PF00930_consen  112 SKYLAFLRFDEREVPEYPLPDYSPPD---------SQYPEVESIRY--PKAGDPNPRV----SLFVVDLASGKTT--ELD  174 (353)
T ss_dssp             SSEEEEEEEE-TTS-EEEEEEESSST---------ESS-EEEEEE----BTTS---EE----EEEEEESSSTCCC--EE-
T ss_pred             CCEEEEEEECCcCCceEEeeccCCcc---------ccCCccccccc--CCCCCcCCce----EEEEEECCCCcEE--Eee
Confidence            97666666667777776654322110         01123455555  3223222111    3566777542221  111


Q ss_pred             cccccccCCccceEEEEeccCCCCeEEEE--cCCc---eEEEEeCCCCCCCceeeecCCCCce---eeeecC-ccCCCCC
Q psy17342        210 LQYNNKQTKNLAVLSLAFPQNDVNNFVVG--CEDG---NVYSACRHGNKAGNVECYEGHEGPV---VGLSSH-RAQGHID  280 (401)
Q Consensus       210 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~d~---~i~~~~~~~~~~~~~~~~~~~~~~v---~~i~~~-~~~~~~~  280 (401)
                      ... .......-+..+.|. +++..+++.  ..+.   .+.++|......+.+... ...+.|   ....+. ++.    
T Consensus       175 ~~~-~~~~~~~yl~~v~W~-~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e-~~~~Wv~~~~~~~~~~~~~----  247 (353)
T PF00930_consen  175 PPN-SLNPQDYYLTRVGWS-PDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE-TSDGWVDVYDPPHFLGPDG----  247 (353)
T ss_dssp             --H-HHHTSSEEEEEEEEE-ETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE-ESSSSSSSSSEEEE-TTTS----
T ss_pred             ecc-ccCCCccCcccceec-CCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe-cCCcceeeecccccccCCC----
Confidence            110 012345678899999 666634433  2222   255667654333222211 122222   233333 443    


Q ss_pred             CCcEEEEEeCCCeEEEEEeeC-CCceEEEeecCCceEE-EEECCCCCcEEEEEecCC----EEEEEeCC-CCCCCcceEE
Q psy17342        281 FSHLYLTSSYDWSVKLWNIKE-NKPVHSFNEFRDYVMD-VQWSPINPALFATVEVAG----RVDLWNLN-LDTEVPATSA  353 (401)
Q Consensus       281 ~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~-v~~~~~~~~~l~~~~~d~----~i~iwd~~-~~~~~~~~~~  353 (401)
                       ..++.....||.-.||-+.. +.....+....-.|.. +.|+++++.++.++..++    .|..-++. .+. ...+  
T Consensus       248 -~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~-~~~L--  323 (353)
T PF00930_consen  248 -NEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE-PKCL--  323 (353)
T ss_dssp             -SEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE-EEES--
T ss_pred             -CEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC-eEec--
Confidence             56666666788655555543 2223455544556644 778888877777777533    45555555 222 1121  


Q ss_pred             eecCCCCe-EEEEecCCCcEEEEEe
Q psy17342        354 IVEGAPAL-SRVTWTPNGTQLCVGD  377 (401)
Q Consensus       354 ~~~~~~~v-~~~~~s~~g~~l~~~~  377 (401)
                        ...... ..+.|||+|++++...
T Consensus       324 --T~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  324 --TCEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             --STTSSTTEEEEE-TTSSEEEEEE
T ss_pred             --cCCCCCceEEEECCCCCEEEEEE
Confidence              122222 5899999999887544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.47  E-value=8e-05  Score=60.92  Aligned_cols=174  Identities=7%  Similarity=0.046  Sum_probs=102.8

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      +.+..++|+|+...|++..         ...+.|..++.+ ++.+.++.+...+..-.+++..++ .++++--.++.+.+
T Consensus        22 ~e~SGLTy~pd~~tLfaV~---------d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQ---------DEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYI   90 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEE---------TTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEE
T ss_pred             CCccccEEcCCCCeEEEEE---------CCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEE
Confidence            4599999999988888888         367888888875 677777777666788899998755 56665556899999


Q ss_pred             EECCCCCCCc-ee---eccccc-cCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccc--cccc-ccccC
Q psy17342        146 WDTRVQKKTP-VH---RTPLSV-MAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETR--DLQY-NNKQT  217 (401)
Q Consensus       146 w~~~~~~~~~-~~---~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~-~~~~~  217 (401)
                      +++....... ..   ...+.+ ..++..+-.++|  .+.++.|+.+-+..-..++.++.........  .... .....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~--D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~  168 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAY--DPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL  168 (248)
T ss_dssp             EEE----TT--EEEEEEEE---S---SS--EEEEE--ETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred             EEEeccccccchhhceEEecccccCCCcceEEEEE--cCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence            9985433211 11   111112 245667899999  8887777777777777888776411111110  0000 00112


Q ss_pred             CccceEEEEeccCCCCeEEEEcCCceEEEEeCCCC
Q psy17342        218 KNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGN  252 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~  252 (401)
                      ....+.+++++|..+.+++....+..|..+|..+.
T Consensus       169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~  203 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR  203 (248)
T ss_dssp             -SS---EEEEETTTTEEEEEETTTTEEEEE-TT--
T ss_pred             eeccccceEEcCCCCeEEEEECCCCeEEEECCCCC
Confidence            34467899999888888999999999999996544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1008|consensus

Probab=98.43  E-value=9.8e-08  Score=84.40  Aligned_cols=209  Identities=17%  Similarity=0.217  Sum_probs=133.2

Q ss_pred             CCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc----CC
Q psy17342        166 HTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC----ED  241 (401)
Q Consensus       166 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~d  241 (401)
                      ....+.|+++....+...++.|..+|.|.+-..+.....  ..+.    ..++...+++++|++-|.+.||+|-    .|
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS--s~E~----tp~~ar~Ct~lAwneLDtn~LAagldkhrnd  128 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS--SAEV----TPGYARPCTSLAWNELDTNHLAAGLDKHRND  128 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc--ccee----cccccccccccccccccHHHHHhhhhhhccc
Confidence            345667787754556678889999999999888753222  1111    2347778999999987888888884    35


Q ss_pred             ceEEEEeCCCCCCCce--eeecC-CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc-eEEEeecCCceEE
Q psy17342        242 GNVYSACRHGNKAGNV--ECYEG-HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP-VHSFNEFRDYVMD  317 (401)
Q Consensus       242 ~~i~~~~~~~~~~~~~--~~~~~-~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~  317 (401)
                      ..+.+||+...-..+.  -.|.+ ......+++|..+      .+++.+|.....+.++|++.... ...+  ....+..
T Consensus       129 s~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd------~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG  200 (783)
T KOG1008|consen  129 SSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRD------TKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQG  200 (783)
T ss_pred             CCccceecccccCCCccccccccccccCccccccccC------cchhhcccccchhhhhhhhhhhhhhhhh--hhhhccc
Confidence            6689999875411111  12222 3344567888865      68888998888999999984322 2222  2446777


Q ss_pred             EEECCCCCcEEEEEecCCEEEEEeC-CCCCC-CcceE-EeecCCCCeEEEEecCCCc-EEEEE-ecCCcEEEEEecc
Q psy17342        318 VQWSPINPALFATVEVAGRVDLWNL-NLDTE-VPATS-AIVEGAPALSRVTWTPNGT-QLCVG-DEKGAITMFDVGE  389 (401)
Q Consensus       318 v~~~~~~~~~l~~~~~d~~i~iwd~-~~~~~-~~~~~-~~~~~~~~v~~~~~s~~g~-~l~~~-~~dg~v~iw~~~~  389 (401)
                      +...|-...++++-. ||.|.+||. +.-+. +..+. ........+..++|+|... .+++. -..++|+.+++..
T Consensus       201 ~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  201 ITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             ceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            888884444666654 999999993 32221 11111 0011123488999999632 34444 4557899999864

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.41  E-value=0.00039  Score=56.95  Aligned_cols=204  Identities=15%  Similarity=0.093  Sum_probs=114.5

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS  197 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd  197 (401)
                      ...+..++|.|+...++++....+.|..++.+ ++....    +.+.+ .+..-.|++  ..++.++++.-.++.+.+++
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~----i~l~g-~~D~EgI~y--~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRR----IPLDG-FGDYEGITY--LGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEE----EE-SS--SSEEEEEE---STTEEEEEETTTTEEEEEE
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEE----EeCCC-CCCceeEEE--ECCCEEEEEEcCCCcEEEEE
Confidence            34699999999877788888888888888864 333221    22333 356778888  66777777666689999999


Q ss_pred             ccCCCCCccc-----cccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCC--CCCCc-eee------ecCC
Q psy17342        198 LEMLSSPQET-----RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHG--NKAGN-VEC------YEGH  263 (401)
Q Consensus       198 ~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~--~~~~~-~~~------~~~~  263 (401)
                      +.........     +.+..  ...+...+-.++|+ +..+.|+++-+..-..++....  ..... ...      ....
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~--~~~~N~G~EGla~D-~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGF--PNKGNKGFEGLAYD-PKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             E----TT--EEEEEEEE-----S---SS--EEEEEE-TTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred             EeccccccchhhceEEeccc--ccCCCcceEEEEEc-CCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence            8542222111     11111  12355678999999 6666666666665566665543  11111 011      1123


Q ss_pred             CCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC---------CceEEEEECCCCCcEEEEEecC
Q psy17342        264 EGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR---------DYVMDVQWSPINPALFATVEVA  334 (401)
Q Consensus       264 ~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------~~v~~v~~~~~~~~~l~~~~~d  334 (401)
                      ...+.+++++|..     +.+++.......|..+| .+|+++..+.-..         ...-.|+|.++|. +++ .++-
T Consensus       170 ~~d~S~l~~~p~t-----~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYI-vsEp  241 (248)
T PF06977_consen  170 VRDLSGLSYDPRT-----GHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYI-VSEP  241 (248)
T ss_dssp             SS---EEEEETTT-----TEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEE-EETT
T ss_pred             eccccceEEcCCC-----CeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEE-EcCC
Confidence            3457889999986     78888888899999999 5788777665422         2467899999996 444 4466


Q ss_pred             CEEEEE
Q psy17342        335 GRVDLW  340 (401)
Q Consensus       335 ~~i~iw  340 (401)
                      +..+++
T Consensus       242 Nlfy~f  247 (248)
T PF06977_consen  242 NLFYRF  247 (248)
T ss_dssp             TEEEEE
T ss_pred             ceEEEe
Confidence            666554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.32  E-value=0.00031  Score=58.50  Aligned_cols=203  Identities=8%  Similarity=-0.016  Sum_probs=124.2

Q ss_pred             EEEEeecC-CceEEEEEeCCCc-EEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEE-----cCCceE
Q psy17342        172 CMSVIGTQ-NAHNLISISNDGR-LCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVG-----CEDGNV  244 (401)
Q Consensus       172 ~~~~~~~~-~~~~l~s~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----~~d~~i  244 (401)
                      .++.  +| ....++.+-.-|+ ..+||..+.........-.      ...-.-.-.|+ +++++|++.     ...|.|
T Consensus         9 ~~a~--~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~------gRHFyGHg~fs-~dG~~LytTEnd~~~g~G~I   79 (305)
T PF07433_consen    9 GVAA--HPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP------GRHFYGHGVFS-PDGRLLYTTENDYETGRGVI   79 (305)
T ss_pred             ceee--CCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC------CCEEecCEEEc-CCCCEEEEeccccCCCcEEE
Confidence            3444  55 4455666666664 6678887644333221111      11112245788 899998876     446789


Q ss_pred             EEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe------------------CCCeEEEEEeeCCCceE
Q psy17342        245 YSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS------------------YDWSVKLWNIKENKPVH  306 (401)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~------------------~d~~i~iwd~~~~~~~~  306 (401)
                      -+||.. .....+..+..|.-.-..+.+.|+      ++.|+.+.                  .+.++..-|..+|+.+.
T Consensus        80 gVyd~~-~~~~ri~E~~s~GIGPHel~l~pD------G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~  152 (305)
T PF07433_consen   80 GVYDAA-RGYRRIGEFPSHGIGPHELLLMPD------GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE  152 (305)
T ss_pred             EEEECc-CCcEEEeEecCCCcChhhEEEcCC------CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee
Confidence            999998 344456677777666677888888      55665543                  23356667778888777


Q ss_pred             EEe----ecCCceEEEEECCCCCcEEEEEecCC-------EEEEEeCCCCCCCcceEEe----ecCCCCeEEEEecCCCc
Q psy17342        307 SFN----EFRDYVMDVQWSPINPALFATVEVAG-------RVDLWNLNLDTEVPATSAI----VEGAPALSRVTWTPNGT  371 (401)
Q Consensus       307 ~~~----~~~~~v~~v~~~~~~~~~l~~~~~d~-------~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~s~~g~  371 (401)
                      ...    .|...|..+++.++|. +++..-..|       .|-+++...  ....+...    ..-...+-+|+++++|.
T Consensus       153 q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~  229 (305)
T PF07433_consen  153 QVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGR  229 (305)
T ss_pred             eeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCC
Confidence            643    3677899999999985 444333222       233333222  11111110    11245688999999998


Q ss_pred             EEEEEe-cCCcEEEEEeccCccc
Q psy17342        372 QLCVGD-EKGAITMFDVGEVGIA  393 (401)
Q Consensus       372 ~l~~~~-~dg~v~iw~~~~~~~~  393 (401)
                      .+++.+ .-|.+.+||..++.+.
T Consensus       230 ~ia~tsPrGg~~~~~d~~tg~~~  252 (305)
T PF07433_consen  230 LIAVTSPRGGRVAVWDAATGRLL  252 (305)
T ss_pred             EEEEECCCCCEEEEEECCCCCEe
Confidence            776555 5668999999998543

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.29  E-value=0.00013  Score=66.51  Aligned_cols=105  Identities=10%  Similarity=-0.002  Sum_probs=76.1

Q ss_pred             CcEEEEEeCCCeEEEEEeeC-----CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCc-------
Q psy17342        282 SHLYLTSSYDWSVKLWNIKE-----NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVP-------  349 (401)
Q Consensus       282 ~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-------  349 (401)
                      +++...  .+++|.+.|.++     .+.+..+.. ......+.++|||+++++++..+.++.|.|+.+.+..-       
T Consensus       288 GK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~  364 (635)
T PRK02888        288 GKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPR  364 (635)
T ss_pred             CCEEEE--CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCcc
Confidence            454444  267899999987     345555554 56678999999999888888889999999998755310       


Q ss_pred             -ceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        350 -ATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       350 -~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                       .+.....-.......+|.++|+...+-.-|..|..|++.+
T Consensus       365 ~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        365 DAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence             0111111123345688999999888888999999999987

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.26  E-value=0.00061  Score=60.07  Aligned_cols=282  Identities=13%  Similarity=0.154  Sum_probs=140.8

Q ss_pred             cCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCC
Q psy17342         74 STQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKK  153 (401)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~  153 (401)
                      |||+++++........+ -.+..+.+.|||+++++..+....  ...+....|+|++ +.++-. .++.|.+++..++..
T Consensus         1 S~d~~~~l~~~~~~~~~-r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g-~~~~~v-~~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQW-RHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDG-KYIAFV-RDNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEES-SSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSS-TEEEEE-ETTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEee-eeccceeEEEEecCCCceEECcCC--ccccccceeecCC-CeeEEE-ecCceEEEECCCCCe
Confidence            57888777743211111 111357899999997544332222  5788999999988 555554 478999998876633


Q ss_pred             CceeeccccccCC----------------CCcEEEEEEeecCCceEEEEEeCC-CcEEEeeccCCCCCcccccccccccc
Q psy17342        154 TPVHRTPLSVMAH----------------THPVFCMSVIGTQNAHNLISISND-GRLCSWSLEMLSSPQETRDLQYNNKQ  216 (401)
Q Consensus       154 ~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~~  216 (401)
                      ..+     +..+.                -+.-..+.|  +|++++|+....| ..|..+.+........          
T Consensus        76 ~~l-----T~dg~~~i~nG~~dwvyeEEv~~~~~~~~W--Spd~~~la~~~~d~~~v~~~~~~~~~~~~~----------  138 (353)
T PF00930_consen   76 TQL-----TTDGEPGIYNGVPDWVYEEEVFDRRSAVWW--SPDSKYLAFLRFDEREVPEYPLPDYSPPDS----------  138 (353)
T ss_dssp             EES-----ES--TTTEEESB--HHHHHHTSSSSBSEEE---TTSSEEEEEEEE-TTS-EEEEEEESSSTE----------
T ss_pred             EEe-----ccccceeEEcCccceeccccccccccceEE--CCCCCEEEEEEECCcCCceEEeeccCCccc----------
Confidence            211     11120                111245667  9999988876543 3444444322111100          


Q ss_pred             CCccceEEEEeccCCCCeEEEEcCCc--eEEEEeCCCCCCCceeee---cCCCCceeeeecCccCCCCCCCc-EEEE-Ee
Q psy17342        217 TKNLAVLSLAFPQNDVNNFVVGCEDG--NVYSACRHGNKAGNVECY---EGHEGPVVGLSSHRAQGHIDFSH-LYLT-SS  289 (401)
Q Consensus       217 ~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~~~~~~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~~~~~-~l~s-~~  289 (401)
                       ....+..+.+- .-      |..+.  .+.++++.+.+...+...   .....-+..+.|.++      +. +++. .+
T Consensus       139 -~yp~~~~~~YP-k~------G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d------~~~l~~~~~n  204 (353)
T PF00930_consen  139 -QYPEVESIRYP-KA------GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPD------GKRLWVQWLN  204 (353)
T ss_dssp             -SS-EEEEEE---BT------TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEET------TEEEEEEEEE
T ss_pred             -cCCcccccccC-CC------CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCC------CcEEEEEEcc
Confidence             00123444443 11      12222  356677765443222222   234556889999998      45 3333 23


Q ss_pred             CCC---eEEEEEeeCCCceEEEee-cCCce---EEEEEC-CCCCcEEEEEecCCEEEEE--eCCCCCCCcceEEeecCCC
Q psy17342        290 YDW---SVKLWNIKENKPVHSFNE-FRDYV---MDVQWS-PINPALFATVEVAGRVDLW--NLNLDTEVPATSAIVEGAP  359 (401)
Q Consensus       290 ~d~---~i~iwd~~~~~~~~~~~~-~~~~v---~~v~~~-~~~~~~l~~~~~d~~i~iw--d~~~~~~~~~~~~~~~~~~  359 (401)
                      .+.   .+.+.|..+++....+.. ....|   ....|. +++..++.....||--+||  +...+.    ......+.-
T Consensus       205 R~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~----~~~lT~G~~  280 (353)
T PF00930_consen  205 RDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK----PRQLTSGDW  280 (353)
T ss_dssp             TTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE----EEESS-SSS
T ss_pred             cCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc----eeccccCce
Confidence            222   466778877665444332 22332   245554 7776677777788755555  444433    112223444


Q ss_pred             CeEE-EEecCCCcEE-EEEecC--Cc--EEEEEec-cCcccee
Q psy17342        360 ALSR-VTWTPNGTQL-CVGDEK--GA--ITMFDVG-EVGIACL  395 (401)
Q Consensus       360 ~v~~-~~~s~~g~~l-~~~~~d--g~--v~iw~~~-~~~~~~l  395 (401)
                      .|.. +.|+++++.| +++..+  +.  |+.-++. .+++++|
T Consensus       281 ~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~L  323 (353)
T PF00930_consen  281 EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCL  323 (353)
T ss_dssp             -EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEES
T ss_pred             eecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEec
Confidence            5644 7788887655 455542  23  4444555 4444444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.21  E-value=0.0011  Score=55.96  Aligned_cols=270  Identities=10%  Similarity=0.115  Sum_probs=137.3

Q ss_pred             cEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEE----------EecCCeEEEEECCCCCCCceeecccccc-C
Q psy17342         97 GVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILG----------GTYSGQIVLWDTRVQKKTPVHRTPLSVM-A  165 (401)
Q Consensus        97 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~----------g~~dg~v~iw~~~~~~~~~~~~~~~~~~-~  165 (401)
                      +.+.|+|.++++.+.....+   -.-.+..+|+++ .+++          |-..-.|.+||..+-........|-.-. .
T Consensus        17 ~rv~viD~d~~k~lGmi~~g---~~~~~~~spdgk-~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~   92 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTG---FLGNVALSPDGK-TIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ   92 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEE---SSEEEEE-TTSS-EEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred             ceEEEEECCCCcEEEEeecc---cCCceeECCCCC-EEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence            58999999887765555443   333466789874 4443          2234469999998865433222111000 0


Q ss_pred             CCCcEEEEEEeecCCceEEEEE--eCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCce
Q psy17342        166 HTHPVFCMSVIGTQNAHNLISI--SNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGN  243 (401)
Q Consensus       166 ~~~~v~~~~~~~~~~~~~l~s~--~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  243 (401)
                      .......+++  +.++++++..  +--..|.+.|+.... ....+..         ..+..+ + |..+..+.+-|.||.
T Consensus        93 ~~~~~~~~~l--s~dgk~~~V~N~TPa~SVtVVDl~~~k-vv~ei~~---------PGC~~i-y-P~~~~~F~~lC~DGs  158 (342)
T PF06433_consen   93 VVPYKNMFAL--SADGKFLYVQNFTPATSVTVVDLAAKK-VVGEIDT---------PGCWLI-Y-PSGNRGFSMLCGDGS  158 (342)
T ss_dssp             BS--GGGEEE---TTSSEEEEEEESSSEEEEEEETTTTE-EEEEEEG---------TSEEEE-E-EEETTEEEEEETTSC
T ss_pred             ecccccceEE--ccCCcEEEEEccCCCCeEEEEECCCCc-eeeeecC---------CCEEEE-E-ecCCCceEEEecCCc
Confidence            0001112233  4555555443  223346666665311 1111111         112222 2 234456888899999


Q ss_pred             EEEEeCCCCCCCcee----eecCCCCcee-eeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceE--EEee------
Q psy17342        244 VYSACRHGNKAGNVE----CYEGHEGPVV-GLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVH--SFNE------  310 (401)
Q Consensus       244 i~~~~~~~~~~~~~~----~~~~~~~~v~-~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~------  310 (401)
                      +....+...-. ...    .|.....++. .-++...      +..++--+.+|.|+--|+.......  .+..      
T Consensus       159 l~~v~Ld~~Gk-~~~~~t~~F~~~~dp~f~~~~~~~~------~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~  231 (342)
T PF06433_consen  159 LLTVTLDADGK-EAQKSTKVFDPDDDPLFEHPAYSRD------GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEK  231 (342)
T ss_dssp             EEEEEETSTSS-EEEEEEEESSTTTS-B-S--EEETT------TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHH
T ss_pred             eEEEEECCCCC-EeEeeccccCCCCcccccccceECC------CCeEEEEecCCEEEEEeccCCcccccCcccccCcccc
Confidence            88777653211 111    1111122221 1111111      3455556789999998886543221  2211      


Q ss_pred             ----cCCceEEEEECCCCCcEEEEEec-------C--CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc-EEEEE
Q psy17342        311 ----FRDYVMDVQWSPINPALFATVEV-------A--GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT-QLCVG  376 (401)
Q Consensus       311 ----~~~~v~~v~~~~~~~~~l~~~~~-------d--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~  376 (401)
                          ..+.-.-+++++....+++....       |  ..|.++|+.+++.+.++..    ..++.+++.+.+.+ +|++.
T Consensus       232 ~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~  307 (342)
T PF06433_consen  232 ADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPLLYAL  307 (342)
T ss_dssp             HTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-EEEEE
T ss_pred             ccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCcEEEEE
Confidence                11223447777765434433221       1  2577888888887766653    23477899998864 66554


Q ss_pred             -ecCCcEEEEEeccCccceeee
Q psy17342        377 -DEKGAITMFDVGEVGIACLKF  397 (401)
Q Consensus       377 -~~dg~v~iw~~~~~~~~~l~~  397 (401)
                       ..++.+.+||..+++  .++.
T Consensus       308 ~~~~~~l~v~D~~tGk--~~~~  327 (342)
T PF06433_consen  308 SAGDGTLDVYDAATGK--LVRS  327 (342)
T ss_dssp             ETTTTEEEEEETTT----EEEE
T ss_pred             cCCCCeEEEEeCcCCc--EEee
Confidence             457899999999984  4444

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4649|consensus

Probab=98.20  E-value=0.0019  Score=51.72  Aligned_cols=94  Identities=11%  Similarity=0.053  Sum_probs=62.6

Q ss_pred             CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEE
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMS  174 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  174 (401)
                      ..+.+.--|..+++..-+...+  ..+.+-+.-- + ++++.|..+|.+++.+..++.......       -.+.|.+-+
T Consensus        31 Hs~~~~avd~~sG~~~We~ilg--~RiE~sa~vv-g-dfVV~GCy~g~lYfl~~~tGs~~w~f~-------~~~~vk~~a   99 (354)
T KOG4649|consen   31 HSGIVIAVDPQSGNLIWEAILG--VRIECSAIVV-G-DFVVLGCYSGGLYFLCVKTGSQIWNFV-------ILETVKVRA   99 (354)
T ss_pred             CCceEEEecCCCCcEEeehhhC--ceeeeeeEEE-C-CEEEEEEccCcEEEEEecchhheeeee-------ehhhhccce
Confidence            6888888898888766554443  3333322222 5 578899999999999999986532211       111222111


Q ss_pred             EeecCCceEEEEEeCCCcEEEeeccC
Q psy17342        175 VIGTQNAHNLISISNDGRLCSWSLEM  200 (401)
Q Consensus       175 ~~~~~~~~~l~s~~~dg~i~~wd~~~  200 (401)
                      -. .+++..+..++.|++....|.++
T Consensus       100 ~~-d~~~glIycgshd~~~yalD~~~  124 (354)
T KOG4649|consen  100 QC-DFDGGLIYCGSHDGNFYALDPKT  124 (354)
T ss_pred             EE-cCCCceEEEecCCCcEEEecccc
Confidence            11 56889999999999999999875

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.15  E-value=0.0014  Score=60.38  Aligned_cols=104  Identities=10%  Similarity=0.036  Sum_probs=65.5

Q ss_pred             EEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEE-----------------ecCCEEEEEeCCCCC
Q psy17342        284 LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATV-----------------EVAGRVDLWNLNLDT  346 (401)
Q Consensus       284 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~-----------------~~d~~i~iwd~~~~~  346 (401)
                      .++.++.+|.+...|.++++.+......   ...++.+| +. +++..                 ..+|.+.-.|+.+++
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~-vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~  377 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GL-VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK  377 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ce-EEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence            6777888999999999999988876532   12234445 22 33321                 246788888998888


Q ss_pred             CCcceEEeecC-C----CCeEEEEecCCCcEEEEEecCCcEEEEEeccCcc
Q psy17342        347 EVPATSAIVEG-A----PALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGI  392 (401)
Q Consensus       347 ~~~~~~~~~~~-~----~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~  392 (401)
                      .+......... .    .+...-.....+..|++++.||.|+.+|.+++++
T Consensus       378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~  428 (488)
T cd00216         378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKE  428 (488)
T ss_pred             EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCce
Confidence            66554321000 0    1111001112567888999999999999999864

The alignment model contains an 8-bladed beta-propeller.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.10  E-value=0.00064  Score=59.12  Aligned_cols=221  Identities=15%  Similarity=0.105  Sum_probs=126.8

Q ss_pred             cEEEEEeCcCCCCCceEEEecCCCeeEEEEeC---C---CCceEEEEec---------C-CeEEEEECCCC-CCCceeec
Q psy17342         97 GVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAK---F---NPYLILGGTY---------S-GQIVLWDTRVQ-KKTPVHRT  159 (401)
Q Consensus        97 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~---~---~~~~l~~g~~---------d-g~v~iw~~~~~-~~~~~~~~  159 (401)
                      +.|++.|..+.+.+..+.+.....+++++...   +   ...+++.|+.         . |.|.++++... ........
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            46899999888877778787777777666543   1   1467777754         2 89999999884 11111111


Q ss_pred             cccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc
Q psy17342        160 PLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC  239 (401)
Q Consensus       160 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  239 (401)
                       +......++|++++-  - ++. |+.+. .+.|.+|++....   ......   .......+.++...   ++++++|.
T Consensus        82 -i~~~~~~g~V~ai~~--~-~~~-lv~~~-g~~l~v~~l~~~~---~l~~~~---~~~~~~~i~sl~~~---~~~I~vgD  146 (321)
T PF03178_consen   82 -IHSTEVKGPVTAICS--F-NGR-LVVAV-GNKLYVYDLDNSK---TLLKKA---FYDSPFYITSLSVF---KNYILVGD  146 (321)
T ss_dssp             -EEEEEESS-EEEEEE--E-TTE-EEEEE-TTEEEEEEEETTS---SEEEEE---EE-BSSSEEEEEEE---TTEEEEEE
T ss_pred             -EEEEeecCcceEhhh--h-CCE-EEEee-cCEEEEEEccCcc---cchhhh---eecceEEEEEEecc---ccEEEEEE
Confidence             112355789999986  2 444 44443 3789999998633   111111   11122356666654   56999998


Q ss_pred             CCceEEEEeCCCCCCCceeeec--CCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC-------CC-ce---E
Q psy17342        240 EDGNVYSACRHGNKAGNVECYE--GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE-------NK-PV---H  306 (401)
Q Consensus       240 ~d~~i~~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~~-~~---~  306 (401)
                      ....+.++..+.... .+..+.  .....++++.+-++      ++.++.+..+|.+.++....       +. .+   .
T Consensus       147 ~~~sv~~~~~~~~~~-~l~~va~d~~~~~v~~~~~l~d------~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~  219 (321)
T PF03178_consen  147 AMKSVSLLRYDEENN-KLILVARDYQPRWVTAAEFLVD------EDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERIS  219 (321)
T ss_dssp             SSSSEEEEEEETTTE--EEEEEEESS-BEEEEEEEE-S------SSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEE
T ss_pred             cccCEEEEEEEccCC-EEEEEEecCCCccEEEEEEecC------CcEEEEEcCCCeEEEEEECCCCcccccccccceeEE
Confidence            888888764432121 122222  23456788888766      46899999999999998863       12 12   2


Q ss_pred             EEeecCCceEEE---EECCC--CCc-----EEEEEecCCEEEEE
Q psy17342        307 SFNEFRDYVMDV---QWSPI--NPA-----LFATVEVAGRVDLW  340 (401)
Q Consensus       307 ~~~~~~~~v~~v---~~~~~--~~~-----~l~~~~~d~~i~iw  340 (401)
                      .+.. ...|+++   ++.|.  +..     .++.++.+|.|...
T Consensus       220 ~f~l-g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  220 SFHL-GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEEC-CCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            2222 4567777   55562  221     36667788888743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.09  E-value=0.00061  Score=59.28  Aligned_cols=144  Identities=12%  Similarity=0.182  Sum_probs=89.0

Q ss_pred             CCeEEEEcC----------CceEEEEeCCCC-----CCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEE
Q psy17342        232 VNNFVVGCE----------DGNVYSACRHGN-----KAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKL  296 (401)
Q Consensus       232 ~~~l~~~~~----------d~~i~~~~~~~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~i  296 (401)
                      ..++++|+.          .|.|.++++...     +.+.+... ...++|++++-..       +. |+.+. .+.|.+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~~-------~~-lv~~~-g~~l~v  111 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSFN-------GR-LVVAV-GNKLYV  111 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEET-------TE-EEEEE-TTEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhhC-------CE-EEEee-cCEEEE
Confidence            567777743          289999998753     11122222 3578899887662       34 55544 689999


Q ss_pred             EEeeCCCceEEEeec--CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC-CCcceEEeecCCCCeEEEEecCCCcEE
Q psy17342        297 WNIKENKPVHSFNEF--RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT-EVPATSAIVEGAPALSRVTWTPNGTQL  373 (401)
Q Consensus       297 wd~~~~~~~~~~~~~--~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l  373 (401)
                      |++...+.+.....+  ...+.++...  +. +++.|..-..+.++..+... .+..+.. ......++++.|-++++.+
T Consensus       112 ~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~  187 (321)
T PF03178_consen  112 YDLDNSKTLLKKAFYDSPFYITSLSVF--KN-YILVGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTI  187 (321)
T ss_dssp             EEEETTSSEEEEEEE-BSSSEEEEEEE--TT-EEEEEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEE
T ss_pred             EEccCcccchhhheecceEEEEEEecc--cc-EEEEEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEE
Confidence            999987723332222  3356666555  43 67778777778877555422 1222221 2234568888888777799


Q ss_pred             EEEecCCcEEEEEecc
Q psy17342        374 CVGDEKGAITMFDVGE  389 (401)
Q Consensus       374 ~~~~~dg~v~iw~~~~  389 (401)
                      ++++.+|.+.++....
T Consensus       188 i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  188 IVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEETTSEEEEEEE-S
T ss_pred             EEEcCCCeEEEEEECC
Confidence            9999999999999974

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4649|consensus

Probab=97.98  E-value=0.0054  Score=49.18  Aligned_cols=67  Identities=15%  Similarity=0.023  Sum_probs=47.8

Q ss_pred             CCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCC
Q psy17342         76 QHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKT  154 (401)
Q Consensus        76 ~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~  154 (401)
                      -|.+++.|.          ..|.+++.+.+++.....+.....-.+.. ...+++ .++..|+.|++.+..|..+....
T Consensus        62 vgdfVV~GC----------y~g~lYfl~~~tGs~~w~f~~~~~vk~~a-~~d~~~-glIycgshd~~~yalD~~~~~cV  128 (354)
T KOG4649|consen   62 VGDFVVLGC----------YSGGLYFLCVKTGSQIWNFVILETVKVRA-QCDFDG-GLIYCGSHDGNFYALDPKTYGCV  128 (354)
T ss_pred             ECCEEEEEE----------ccCcEEEEEecchhheeeeeehhhhccce-EEcCCC-ceEEEecCCCcEEEecccccceE
Confidence            456788888          48999999999987776665542222222 223434 69999999999999999876643

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.95  E-value=0.0037  Score=51.18  Aligned_cols=177  Identities=11%  Similarity=0.087  Sum_probs=119.8

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQI  143 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v  143 (401)
                      -...|.++.|+|+.+.|++..          ....-.|+=...|+.+.++.+..-+..-.++|...+ .++++--.++.+
T Consensus        84 ~~~nvS~LTynp~~rtLFav~----------n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l  152 (316)
T COG3204          84 ETANVSSLTYNPDTRTLFAVT----------NKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRAL  152 (316)
T ss_pred             ccccccceeeCCCcceEEEec----------CCCceEEEEecCCceEEEecccccCChhHeEEecCC-EEEEEehhcceE
Confidence            345599999999999999998          455555655555888877776656667778888755 677777778889


Q ss_pred             EEEECCCCCCCceee---ccccccCC-CCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccc--ccccC
Q psy17342        144 VLWDTRVQKKTPVHR---TPLSVMAH-THPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY--NNKQT  217 (401)
Q Consensus       144 ~iw~~~~~~~~~~~~---~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--~~~~~  217 (401)
                      .++.+..........   .++....+ +..-..++|  .+....|+.+=+-.-+.++.+..............  ....-
T Consensus       153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~--d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~  230 (316)
T COG3204         153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAW--DPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL  230 (316)
T ss_pred             EEEEEcCCccEEeccceEEeccccCCCCcCceeeec--CCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce
Confidence            988887654322211   11222233 556788999  88999999988888888888764221111111100  00001


Q ss_pred             CccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCC
Q psy17342        218 KNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK  253 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~  253 (401)
                      .-..|.++.|++..+..++.+.+++.+.-.|..+..
T Consensus       231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~  266 (316)
T COG3204         231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV  266 (316)
T ss_pred             EeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence            234677889998888899999999999988887653

>KOG4640|consensus

Probab=97.93  E-value=4.2e-05  Score=68.24  Aligned_cols=93  Identities=12%  Similarity=0.139  Sum_probs=77.0

Q ss_pred             CceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceE-EEEECCCCCcEEEEEecCCEEEEEeCC
Q psy17342        265 GPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVM-DVQWSPINPALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       265 ~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-~v~~~~~~~~~l~~~~~d~~i~iwd~~  343 (401)
                      ..|..+.|+|.      -.++|.+..+|.|.+..+. .+.+.++..|...++ +++|.|||+ ++|.|-.||+|++.|+.
T Consensus        21 ~~i~~~ewnP~------~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve   92 (665)
T KOG4640|consen   21 INIKRIEWNPK------MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVE   92 (665)
T ss_pred             cceEEEEEcCc------cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEcc
Confidence            45778999998      6899999999999999987 788888887777777 999999997 89999999999999999


Q ss_pred             CCCCCcceEEeecCCCCeEEEEec
Q psy17342        344 LDTEVPATSAIVEGAPALSRVTWT  367 (401)
Q Consensus       344 ~~~~~~~~~~~~~~~~~v~~~~~s  367 (401)
                      ++..+....  ..-...|..+-|+
T Consensus        93 ~~~~l~~~~--~s~e~~is~~~w~  114 (665)
T KOG4640|consen   93 KGGRLVSFL--FSVETDISKGIWD  114 (665)
T ss_pred             CCCceeccc--cccccchheeecc
Confidence            887655421  2234567777775

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.93  E-value=0.0032  Score=55.75  Aligned_cols=246  Identities=15%  Similarity=0.118  Sum_probs=119.1

Q ss_pred             CeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeecc
Q psy17342        120 PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLE  199 (401)
Q Consensus       120 ~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~  199 (401)
                      .|+.+.|+++. .-|++|...|.|.||.+...+....        ....+-....+  .+    +  ...++.-.+-|+.
T Consensus         3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~--------~~~~~~~~~~~--~~----~--~~~~~~~~l~di~   65 (395)
T PF08596_consen    3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGN--------REQPPDLDYNF--RR----F--SLNNSPGKLTDIS   65 (395)
T ss_dssp             -EEEEEEETTT-TEEEEEETTS-EEEEEEEE----------------------------S--------GGGSS-SEEE-G
T ss_pred             eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCc--------cCCCcccCccc--cc----c--cccCCCcceEEeh
Confidence            58899999965 5788888999999999876543210        00000011111  00    0  0011122233333


Q ss_pred             CCCCCc--ccc-ccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC------CCCceeee
Q psy17342        200 MLSSPQ--ETR-DLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG------HEGPVVGL  270 (401)
Q Consensus       200 ~~~~~~--~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~------~~~~v~~i  270 (401)
                      ....+.  +.+ ....  ......+|++++.+  +-.++++|.++|.+.+.|+++...-....+..      ....|+++
T Consensus        66 ~r~~~~~~~gf~P~~l--~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~i  141 (395)
T PF08596_consen   66 DRAPPSLKEGFLPLTL--LDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSI  141 (395)
T ss_dssp             GG--TT-SEEEEEEEE--E---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEE
T ss_pred             hhCCcccccccCchhh--eeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEE
Confidence            211111  000 0000  22246789999987  77899999999999999998653211111222      23457778


Q ss_pred             ecCccCCCCC--CCcEEEEEeCCCeEEEEEeeC---CCceEEE----eecCCceEEEE-ECCC-C---------------
Q psy17342        271 SSHRAQGHID--FSHLYLTSSYDWSVKLWNIKE---NKPVHSF----NEFRDYVMDVQ-WSPI-N---------------  324 (401)
Q Consensus       271 ~~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~---~~~~~~~----~~~~~~v~~v~-~~~~-~---------------  324 (401)
                      .|....-..|  ..-.+++|...|.+.+|.+.-   +.-...+    ..+.+.|..+. ++.+ |               
T Consensus       142 eF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~  221 (395)
T PF08596_consen  142 EFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSK  221 (395)
T ss_dssp             EEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGG
T ss_pred             EEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhcccc
Confidence            7764221111  135788888999999998852   2111111    13445555554 3221 1               


Q ss_pred             ----CcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEe-----cCCCcEEEEEecCCcEEEEEeccC
Q psy17342        325 ----PALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTW-----TPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       325 ----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                          +.+++.++ +..++++...+.+.....   .........+.+     ...+..|++-..+|.|++|.+..-
T Consensus       222 g~~i~g~vVvvS-e~~irv~~~~~~k~~~K~---~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L  292 (395)
T PF08596_consen  222 GISIPGYVVVVS-ESDIRVFKPPKSKGAHKS---FDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL  292 (395)
T ss_dssp             T----EEEEEE--SSEEEEE-TT---EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred             CCCcCcEEEEEc-ccceEEEeCCCCccccee---eccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence                22444444 678999998876532221   222222334444     235778899999999999999874

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.92  E-value=0.012  Score=50.99  Aligned_cols=281  Identities=11%  Similarity=0.051  Sum_probs=120.1

Q ss_pred             EecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCC
Q psy17342         72 DWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQ  151 (401)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~  151 (401)
                      +|.++|+.|+.++-.       .....+.+.|+.+++..+.. -+.........++|++..++..- ....|+-.|+++.
T Consensus        42 ~ft~dG~kllF~s~~-------dg~~nly~lDL~t~~i~QLT-dg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~  112 (386)
T PF14583_consen   42 CFTDDGRKLLFASDF-------DGNRNLYLLDLATGEITQLT-DGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTL  112 (386)
T ss_dssp             -B-TTS-EEEEEE-T-------TSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT-
T ss_pred             CcCCCCCEEEEEecc-------CCCcceEEEEcccCEEEECc-cCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcC
Confidence            688999888887721       13556777788866544322 22112233466678774444543 4568888899887


Q ss_pred             CCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC----------------------CcEEEeeccCCCCCccccc
Q psy17342        152 KKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND----------------------GRLCSWSLEMLSSPQETRD  209 (401)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----------------------g~i~~wd~~~~~~~~~~~~  209 (401)
                      +...+..      .....+-...|..+.++..++..-..                      ..|.-.|+.+ ++...   
T Consensus       113 e~~~vy~------~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t-G~~~~---  182 (386)
T PF14583_consen  113 EERVVYE------VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT-GERKV---  182 (386)
T ss_dssp             -EEEEEE--------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---EEE---
T ss_pred             cEEEEEE------CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC-CceeE---
Confidence            6543332      33444444555434555554432111                      1122222222 11111   


Q ss_pred             cccccccCCccceEEEEeccCCCCeEEEEcC------CceEEEEeCCCCCCCceeeecCCC--CceeeeecCccCCCCCC
Q psy17342        210 LQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE------DGNVYSACRHGNKAGNVECYEGHE--GPVVGLSSHRAQGHIDF  281 (401)
Q Consensus       210 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------d~~i~~~~~~~~~~~~~~~~~~~~--~~v~~i~~~~~~~~~~~  281 (401)
                           .......+..+.|+|.+...|+.|-+      |..|.+.+..+...   ..+..+.  ..+.-=-|.|+      
T Consensus       183 -----v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~---~~v~~~~~~e~~gHEfw~~D------  248 (386)
T PF14583_consen  183 -----VFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV---KKVHRRMEGESVGHEFWVPD------  248 (386)
T ss_dssp             -----EEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------EESS---TTEEEEEEEE-TT------
T ss_pred             -----EEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc---eeeecCCCCcccccccccCC------
Confidence                 11134456778899888888887643      22344444433322   2222221  12222245565      


Q ss_pred             CcEEEE-Ee----CCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCC----------------EEEEE
Q psy17342        282 SHLYLT-SS----YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAG----------------RVDLW  340 (401)
Q Consensus       282 ~~~l~s-~~----~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~----------------~i~iw  340 (401)
                      +..+.- +.    .+..|.-+|+.+++......  ..+...+--+++|. +++.=+.|.                .|+++
T Consensus       249 G~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~-L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~  325 (386)
T PF14583_consen  249 GSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGK-LFVGDGGDAPVDVADAGGYKIENDPWIYLF  325 (386)
T ss_dssp             SS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSS-EEEEEE-------------------EEEEE
T ss_pred             CCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCC-EEEecCCCCCccccccccceecCCcEEEEe
Confidence            333222 21    23356666776665433222  22445666788987 665433332                46667


Q ss_pred             eCCCCCCCcceEEe-----ecCCC--CeEEEEecCCCcEEE-EEecCCcEEEEEec
Q psy17342        341 NLNLDTEVPATSAI-----VEGAP--ALSRVTWTPNGTQLC-VGDEKGAITMFDVG  388 (401)
Q Consensus       341 d~~~~~~~~~~~~~-----~~~~~--~v~~~~~s~~g~~l~-~~~~dg~v~iw~~~  388 (401)
                      ++..+.........     ..+..  .=....|+|||++++ ++...|...||-++
T Consensus       326 ~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  326 DVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             ETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             ccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence            77665433222210     01111  124589999998765 56667877777654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.89  E-value=0.014  Score=52.58  Aligned_cols=222  Identities=9%  Similarity=0.075  Sum_probs=116.8

Q ss_pred             cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEe
Q psy17342        117 CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSW  196 (401)
Q Consensus       117 ~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~w  196 (401)
                      ....+..+.++|.+ +.++.+ .+|.-.|+.....+.           ...+......|  .+. +.+++-...++|.++
T Consensus        31 ~~~~p~~ls~npng-r~v~V~-g~geY~iyt~~~~r~-----------k~~G~g~~~vw--~~~-n~yAv~~~~~~I~I~   94 (443)
T PF04053_consen   31 CEIYPQSLSHNPNG-RFVLVC-GDGEYEIYTALAWRN-----------KAFGSGLSFVW--SSR-NRYAVLESSSTIKIY   94 (443)
T ss_dssp             -SS--SEEEE-TTS-SEEEEE-ETTEEEEEETTTTEE-----------EEEEE-SEEEE---TS-SEEEEE-TTS-EEEE
T ss_pred             CCcCCeeEEECCCC-CEEEEE-cCCEEEEEEccCCcc-----------cccCceeEEEE--ecC-ccEEEEECCCeEEEE
Confidence            34568899999977 555554 588999998433221           12334456677  664 457777778889996


Q ss_pred             -eccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCcc
Q psy17342        197 -SLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRA  275 (401)
Q Consensus       197 -d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  275 (401)
                       ++..  .....+.+.        ..+..+-   . |..|...+.+ .|.+||....  +.+..+..  .+|..+.|+++
T Consensus        95 kn~~~--~~~k~i~~~--------~~~~~If---~-G~LL~~~~~~-~i~~yDw~~~--~~i~~i~v--~~vk~V~Ws~~  155 (443)
T PF04053_consen   95 KNFKN--EVVKSIKLP--------FSVEKIF---G-GNLLGVKSSD-FICFYDWETG--KLIRRIDV--SAVKYVIWSDD  155 (443)
T ss_dssp             ETTEE---TT-----S--------S-EEEEE-----SSSEEEEETT-EEEEE-TTT----EEEEESS---E-EEEEE-TT
T ss_pred             EcCcc--ccceEEcCC--------cccceEE---c-CcEEEEECCC-CEEEEEhhHc--ceeeEEec--CCCcEEEEECC
Confidence             3321  111122221        1233333   2 6677766554 8999999843  45666653  34899999998


Q ss_pred             CCCCCCCcEEEEEeCCCeEEEEEeeCC-----------CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        276 QGHIDFSHLYLTSSYDWSVKLWNIKEN-----------KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       276 ~~~~~~~~~l~s~~~d~~i~iwd~~~~-----------~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                            +++++..+ +..+.|++....           .....+..-...|.+.+|..+  .++.+.. . .|+.  +..
T Consensus       156 ------g~~val~t-~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~-~-~lkY--l~~  222 (443)
T PF04053_consen  156 ------GELVALVT-KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTS-N-HLKY--LVN  222 (443)
T ss_dssp             ------SSEEEEE--S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-T-T-EEEE--EET
T ss_pred             ------CCEEEEEe-CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcC-C-eEEE--EEc
Confidence                  78888887 457888776433           023333322567889999877  3455443 3 6766  443


Q ss_pred             CCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        345 DTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       345 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      +.. ..+..   -..++.=+...+..+.+.....|+.|..+.+...
T Consensus       223 Ge~-~~i~~---ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  223 GET-GIIAH---LDKPLYLLGYLPKENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             TEE-EEEEE----SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred             CCc-ceEEE---cCCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence            332 23221   1345666777787788888999999999888654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.87  E-value=0.019  Score=52.02  Aligned_cols=256  Identities=11%  Similarity=0.032  Sum_probs=129.1

Q ss_pred             ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC------
Q psy17342         67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS------  140 (401)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d------  140 (401)
                      .+....++|+|+++|.+--     ..|+....++++|+++++.+...... . ....+.|.+++..++++...+      
T Consensus       125 ~~~~~~~Spdg~~la~~~s-----~~G~e~~~l~v~Dl~tg~~l~d~i~~-~-~~~~~~W~~d~~~~~y~~~~~~~~~~~  197 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLS-----DGGSEWYTLRVFDLETGKFLPDGIEN-P-KFSSVSWSDDGKGFFYTRFDEDQRTSD  197 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEE-----ETTSSEEEEEEEETTTTEEEEEEEEE-E-ESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred             EeeeeeECCCCCEEEEEec-----CCCCceEEEEEEECCCCcCcCCcccc-c-ccceEEEeCCCCEEEEEEeCccccccc
Confidence            3446889999998887751     12334567999999988655432221 1 122399999886666665333      


Q ss_pred             ----CeEEEEECCCCCCCceeeccccccCCCCc--EEEEEEeecCCceEEEEEeCCC----cEEEeeccCCCCCcccccc
Q psy17342        141 ----GQIVLWDTRVQKKTPVHRTPLSVMAHTHP--VFCMSVIGTQNAHNLISISNDG----RLCSWSLEMLSSPQETRDL  210 (401)
Q Consensus       141 ----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~s~~~dg----~i~~wd~~~~~~~~~~~~~  210 (401)
                          ..|..|.+.+......    +-+......  ...+..  ++++.+++..+..+    .+.+.++.....+......
T Consensus       198 ~~~~~~v~~~~~gt~~~~d~----lvfe~~~~~~~~~~~~~--s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~  271 (414)
T PF02897_consen  198 SGYPRQVYRHKLGTPQSEDE----LVFEEPDEPFWFVSVSR--SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKL  271 (414)
T ss_dssp             CGCCEEEEEEETTS-GGG-E----EEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEE
T ss_pred             CCCCcEEEEEECCCChHhCe----eEEeecCCCcEEEEEEe--cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEE
Confidence                2377888876654311    112222222  456666  88888877543322    3566666542101111111


Q ss_pred             ccccccCCccceEEEEeccCCCCeEEEE---cCCceEEEEeCCCCCCCc-eeeecCCCC--ceeeeecCccCCCCCCCcE
Q psy17342        211 QYNNKQTKNLAVLSLAFPQNDVNNFVVG---CEDGNVYSACRHGNKAGN-VECYEGHEG--PVVGLSSHRAQGHIDFSHL  284 (401)
Q Consensus       211 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~d~~i~~~~~~~~~~~~-~~~~~~~~~--~v~~i~~~~~~~~~~~~~~  284 (401)
                      .    ......+....-+ ..+.+++..   ..++.|...++....... ...+..+..  .+..+....       ..+
T Consensus       272 l----~~~~~~~~~~v~~-~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~-------~~L  339 (414)
T PF02897_consen  272 L----SPREDGVEYYVDH-HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK-------DYL  339 (414)
T ss_dssp             E----EESSSS-EEEEEE-ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET-------TEE
T ss_pred             E----eCCCCceEEEEEc-cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC-------CEE
Confidence            1    1122233222222 223333333   224556666666433211 223444544  355554432       345


Q ss_pred             EEEEeCCC--eEEEEEeeCCCceEEEee-cCCceEEEEECCCCCcEEEEEecC---CEEEEEeCCCCCC
Q psy17342        285 YLTSSYDW--SVKLWNIKENKPVHSFNE-FRDYVMDVQWSPINPALFATVEVA---GRVDLWNLNLDTE  347 (401)
Q Consensus       285 l~s~~~d~--~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~  347 (401)
                      ++.-..++  .|+++++..+.....+.. ..+.|..+...++++.+++..+.-   +++.-||+.+++.
T Consensus       340 vl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  340 VLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             EEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            55555454  578888873444444443 234567777677776565555432   5788888887663

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3617|consensus

Probab=97.86  E-value=3e-05  Score=71.48  Aligned_cols=109  Identities=17%  Similarity=0.281  Sum_probs=85.0

Q ss_pred             eeeecCccCCCCCCCcEEEEEeC----CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCC
Q psy17342        268 VGLSSHRAQGHIDFSHLYLTSSY----DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       268 ~~i~~~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~  343 (401)
                      +-.+|+|.      ..+|+.++.    .|+|.||- .+|+|.....- +-.+++++|+|..- +|+.|-.-|.+.+|...
T Consensus        19 ti~SWHPs------ePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~-vLa~gwe~g~~~v~~~~   89 (1416)
T KOG3617|consen   19 TISSWHPS------EPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEF-VLAQGWEMGVSDVQKTN   89 (1416)
T ss_pred             cccccCCC------CceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHH-HHhhccccceeEEEecC
Confidence            34589998      578887764    67888884 56776554432 33467899999974 88888888999999987


Q ss_pred             CCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEec
Q psy17342        344 LDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       344 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~  388 (401)
                      +.+..   .....|..+|..+.||++|..|+++..-|.|.+|...
T Consensus        90 ~~e~h---tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   90 TTETH---TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             Cceee---eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            65432   2235788999999999999999999999999999886

>KOG3621|consensus

Probab=97.84  E-value=0.00063  Score=61.81  Aligned_cols=144  Identities=13%  Similarity=0.125  Sum_probs=95.1

Q ss_pred             CeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeecc
Q psy17342        120 PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLE  199 (401)
Q Consensus       120 ~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~  199 (401)
                      .|.--++...+ .+++.|+..|.+.+|+-..+.....     ...+..+.+..+..  +++..++|.|+..|.|.++.+.
T Consensus        35 ~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~~~~-----~~~~~~~~~~~~~v--s~~e~lvAagt~~g~V~v~ql~  106 (726)
T KOG3621|consen   35 RVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEMRKL-----KNEGATGITCVRSV--SSVEYLVAAGTASGRVSVFQLN  106 (726)
T ss_pred             eEEEEEeecCC-ceEEEecccceEEEEecCchhhhcc-----cccCccceEEEEEe--cchhHhhhhhcCCceEEeehhh
Confidence            33333444433 7899999999999999877664321     11233344445555  7888899999999999999988


Q ss_pred             CCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCC--CCceeeecCCCCceeeeecCc
Q psy17342        200 MLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK--AGNVECYEGHEGPVVGLSSHR  274 (401)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~--~~~~~~~~~~~~~v~~i~~~~  274 (401)
                      ....+........  ...|...|++++|+ +++..+++|...|.|.+-.++...  ......+..-.+.|..+.+..
T Consensus       107 ~~~p~~~~~~t~~--d~~~~~rVTal~Ws-~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q  180 (726)
T KOG3621|consen  107 KELPRDLDYVTPC--DKSHKCRVTALEWS-KNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ  180 (726)
T ss_pred             ccCCCcceeeccc--cccCCceEEEEEec-ccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc
Confidence            7333333222222  33478999999999 899999999999999887766411  001122223456777777664

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.84  E-value=0.0027  Score=44.12  Aligned_cols=104  Identities=20%  Similarity=0.260  Sum_probs=70.1

Q ss_pred             eeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342        267 VVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT  346 (401)
Q Consensus       267 v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~  346 (401)
                      |+++++....+  +..+.|+.|+.|..||+|+-  ...+.++.. ...|.+++-...+  .|+.+-.+|+|-+|+-... 
T Consensus         2 V~al~~~d~d~--dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~R-   73 (111)
T PF14783_consen    2 VTALCLFDFDG--DGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGGG--RFAYALANGTVGVYDRSQR-   73 (111)
T ss_pred             eeEEEEEecCC--CCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCCC--EEEEEecCCEEEEEeCcce-
Confidence            55666555321  11478999999999999974  467777776 5678888877775  5888889999999986432 


Q ss_pred             CCcceEEeecCCCCeEEEEecC-C--C-cEEEEEecCCcEE
Q psy17342        347 EVPATSAIVEGAPALSRVTWTP-N--G-TQLCVGDEKGAIT  383 (401)
Q Consensus       347 ~~~~~~~~~~~~~~v~~~~~s~-~--g-~~l~~~~~dg~v~  383 (401)
                       +.+.    .....++++.+.. +  | +-|++|-.+|.|-
T Consensus        74 -lWRi----KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 -LWRI----KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -eeee----ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence             2222    2233355655543 3  2 4688998898774

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.78  E-value=0.0047  Score=58.89  Aligned_cols=140  Identities=10%  Similarity=0.091  Sum_probs=89.9

Q ss_pred             CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeC----CCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcE
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAK----FNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPV  170 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  170 (401)
                      ....|+-.|++.|+.+.+...+...+|..++-..    -.+.-.+.|-.++.+..||.+-.....+... ...-......
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~-~k~Y~~~~~F  580 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ-SKQYSSKNNF  580 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc-ccccccCCCc
Confidence            4577888899999998888877655565554321    1122345566788999999986542212111 1111334456


Q ss_pred             EEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEe
Q psy17342        171 FCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSAC  248 (401)
Q Consensus       171 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~  248 (401)
                      .|++-   ....+||.|+.+|.|++||--  +.. ....     +.+-..+|..|..+ .||+++++.+.. .+.+++
T Consensus       581 s~~aT---t~~G~iavgs~~G~IRLyd~~--g~~-AKT~-----lp~lG~pI~~iDvt-~DGkwilaTc~t-yLlLi~  645 (794)
T PF08553_consen  581 SCFAT---TEDGYIAVGSNKGDIRLYDRL--GKR-AKTA-----LPGLGDPIIGIDVT-ADGKWILATCKT-YLLLID  645 (794)
T ss_pred             eEEEe---cCCceEEEEeCCCcEEeeccc--chh-hhhc-----CCCCCCCeeEEEec-CCCcEEEEeecc-eEEEEE
Confidence            67764   455589999999999999932  211 1111     33467899999999 899998877764 444444

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.74  E-value=0.021  Score=48.47  Aligned_cols=236  Identities=14%  Similarity=0.094  Sum_probs=127.4

Q ss_pred             CceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccc
Q psy17342        131 PYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDL  210 (401)
Q Consensus       131 ~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~  210 (401)
                      .+.|+.|+.+| +.+++........       ...+..+|..+..  .++-+.+++-+ |+.+.++++............
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~-------~i~~~~~I~ql~v--l~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~   75 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPT-------RILKLSSITQLSV--LPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPL   75 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccce-------eEeecceEEEEEE--ecccCEEEEEc-CCccEEEEchhhccccccccc
Confidence            36788888888 8999983222110       1223344999988  56666666554 499999999764433321100


Q ss_pred             ccc------cccCCccceEEEE-eccCCCCeEEEEcCCceEEEEeCCCC--CC-CceeeecCCCCceeeeecCccCCCCC
Q psy17342        211 QYN------NKQTKNLAVLSLA-FPQNDVNNFVVGCEDGNVYSACRHGN--KA-GNVECYEGHEGPVVGLSSHRAQGHID  280 (401)
Q Consensus       211 ~~~------~~~~~~~~v~~~~-~~~~~~~~l~~~~~d~~i~~~~~~~~--~~-~~~~~~~~~~~~v~~i~~~~~~~~~~  280 (401)
                      ...      ........+..++ -....+...++......|.+|.....  .. ...+.+. -...+.+++|.+      
T Consensus        76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~------  148 (275)
T PF00780_consen   76 AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG------  148 (275)
T ss_pred             cccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC------
Confidence            000      0111233455555 12233333344444458887766542  22 2334443 346788899884      


Q ss_pred             CCcEEEEEeCCCeEEEEEeeCCCceEEEeec------------CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCC
Q psy17342        281 FSHLYLTSSYDWSVKLWNIKENKPVHSFNEF------------RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV  348 (401)
Q Consensus       281 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------------~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  348 (401)
                        +.++.|. .....+.|+.++.....+...            ..++..+... ++. +|++.  |..-.+.|.. ++..
T Consensus       149 --~~i~v~~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e-~Ll~~--~~~g~fv~~~-G~~~  220 (275)
T PF00780_consen  149 --NKICVGT-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNE-FLLCY--DNIGVFVNKN-GEPS  220 (275)
T ss_pred             --CEEEEEe-CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-Cce-EEEEe--cceEEEEcCC-CCcC
Confidence              5666666 445888899876554333211            1234344444 343 55543  4344444443 4433


Q ss_pred             cceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeeee
Q psy17342        349 PATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT  399 (401)
Q Consensus       349 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~~  399 (401)
                      .......  .....++++  ...+|++.+.++ |.||++.++  +.+++++
T Consensus       221 r~~~i~W--~~~p~~~~~--~~pyli~~~~~~-iEV~~~~~~--~lvQ~i~  264 (275)
T PF00780_consen  221 RKSTIQW--SSAPQSVAY--SSPYLIAFSSNS-IEVRSLETG--ELVQTIP  264 (275)
T ss_pred             cccEEEc--CCchhEEEE--ECCEEEEECCCE-EEEEECcCC--cEEEEEE
Confidence            3222222  334556666  456787777655 999999999  4566554

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>smart00320 WD40 WD40 repeats

Probab=97.73  E-value=0.00012  Score=40.30  Aligned_cols=38  Identities=21%  Similarity=0.447  Sum_probs=33.0

Q ss_pred             CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEe
Q psy17342        303 KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN  341 (401)
Q Consensus       303 ~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd  341 (401)
                      +++..+..|...|.++.|+|.+. ++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence            45667778888999999999886 889999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.73  E-value=0.00082  Score=60.28  Aligned_cols=145  Identities=13%  Similarity=0.131  Sum_probs=79.4

Q ss_pred             CccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEE
Q psy17342        218 KNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLW  297 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iw  297 (401)
                      ....+..+.++ |+++.+++ +.+|...++.....    ...   ..+.-....|.+.       +.+|+-...++|.|+
T Consensus        31 ~~~~p~~ls~n-pngr~v~V-~g~geY~iyt~~~~----r~k---~~G~g~~~vw~~~-------n~yAv~~~~~~I~I~   94 (443)
T PF04053_consen   31 CEIYPQSLSHN-PNGRFVLV-CGDGEYEIYTALAW----RNK---AFGSGLSFVWSSR-------NRYAVLESSSTIKIY   94 (443)
T ss_dssp             -SS--SEEEE--TTSSEEEE-EETTEEEEEETTTT----EEE---EEEE-SEEEE-TS-------SEEEEE-TTS-EEEE
T ss_pred             CCcCCeeEEEC-CCCCEEEE-EcCCEEEEEEccCC----ccc---ccCceeEEEEecC-------ccEEEEECCCeEEEE
Confidence            33456789999 78888888 55677777763311    111   1244467788884       457777778899996


Q ss_pred             EeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEe
Q psy17342        298 NIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGD  377 (401)
Q Consensus       298 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  377 (401)
                      .--+.+....+.. ...+..+-.   |. +|+..+ ++.|.+||..+++.+..+.     -.+|..+.|+++|.+++..+
T Consensus        95 kn~~~~~~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~-----v~~vk~V~Ws~~g~~val~t  163 (443)
T PF04053_consen   95 KNFKNEVVKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRID-----VSAVKYVIWSDDGELVALVT  163 (443)
T ss_dssp             ETTEE-TT------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEES-----S-E-EEEEE-TTSSEEEEE-
T ss_pred             EcCccccceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEe-----cCCCcEEEEECCCCEEEEEe
Confidence            3223333334443 223444433   65 565554 4489999999987665542     23488999999999999888


Q ss_pred             cCCcEEEEEeccC
Q psy17342        378 EKGAITMFDVGEV  390 (401)
Q Consensus       378 ~dg~v~iw~~~~~  390 (401)
                      .+ .+.|++.+..
T Consensus       164 ~~-~i~il~~~~~  175 (443)
T PF04053_consen  164 KD-SIYILKYNLE  175 (443)
T ss_dssp             S--SEEEEEE-HH
T ss_pred             CC-eEEEEEecch
Confidence            66 5888876554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.70  E-value=0.0038  Score=55.91  Aligned_cols=158  Identities=18%  Similarity=0.260  Sum_probs=96.1

Q ss_pred             cceEEEEeccCCCCeEEEE---cCC-ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCe--
Q psy17342        220 LAVLSLAFPQNDVNNFVVG---CED-GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWS--  293 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~---~~d-~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~--  293 (401)
                      ..+..-+|+ +++..++.-   ... ..++++++.......+..+.++.   ..-+|+|+.     ..++++...|+.  
T Consensus       193 ~~~~~p~ws-~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG-----~~l~f~~~rdg~~~  263 (425)
T COG0823         193 SLILTPAWS-PDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDG-----SKLAFSSSRDGSPD  263 (425)
T ss_pred             cceeccccC-cCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCC-----CEEEEEECCCCCcc
Confidence            345566777 566554432   222 46889999876665566655554   356889984     455555556765  


Q ss_pred             EEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEE--eCCCCCCCcceEEeecCCCCeEEEEecCCCc
Q psy17342        294 VKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLW--NLNLDTEVPATSAIVEGAPALSRVTWTPNGT  371 (401)
Q Consensus       294 i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  371 (401)
                      |.+.|+..+. +..+....+.-..=.|+|+|+.++.+.+..|.-.||  +...... ..+..  .... -..-.|+|||+
T Consensus       264 iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~--~~~~-~~~p~~SpdG~  338 (425)
T COG0823         264 IYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF--SGGG-NSNPVWSPDGD  338 (425)
T ss_pred             EEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec--cCCC-CcCccCCCCCC
Confidence            5566776555 333544344344678999999877777777765555  4443332 22222  2122 22678999999


Q ss_pred             EEEEEecC-Cc--EEEEEeccCc
Q psy17342        372 QLCVGDEK-GA--ITMFDVGEVG  391 (401)
Q Consensus       372 ~l~~~~~d-g~--v~iw~~~~~~  391 (401)
                      +|+..+.. |.  |.+.++.++.
T Consensus       339 ~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         339 KIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             EEEEEeccCCceeeEEeccCCCC
Confidence            99877643 44  6677776654

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.68  E-value=0.035  Score=49.28  Aligned_cols=81  Identities=14%  Similarity=0.099  Sum_probs=54.5

Q ss_pred             CceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCce----EEEEECCC--------------CCc
Q psy17342        265 GPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYV----MDVQWSPI--------------NPA  326 (401)
Q Consensus       265 ~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v----~~v~~~~~--------------~~~  326 (401)
                      ..+.++..+|.      +.+.++...=|+|.++|+.++..++.+++..+.-    ....-...              ...
T Consensus       308 R~~~~i~~sP~------~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~  381 (415)
T PF14655_consen  308 REGESICLSPS------GRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF  381 (415)
T ss_pred             ceEEEEEECCC------CCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence            45788899998      6888887778999999999999888888744321    11110000              112


Q ss_pred             EEEEEecCCEEEEEeCCCCCCCcce
Q psy17342        327 LFATVEVAGRVDLWNLNLDTEVPAT  351 (401)
Q Consensus       327 ~l~~~~~d~~i~iwd~~~~~~~~~~  351 (401)
                      +++-+-.-|.|.||.++.+..+..+
T Consensus       382 LvIyaprRg~lEvW~~~~g~Rv~a~  406 (415)
T PF14655_consen  382 LVIYAPRRGILEVWSMRQGPRVAAF  406 (415)
T ss_pred             EEEEeccCCeEEEEecCCCCEEEEE
Confidence            3444556788999999887655443

>KOG2444|consensus

Probab=97.67  E-value=0.00011  Score=57.33  Aligned_cols=146  Identities=14%  Similarity=0.111  Sum_probs=85.0

Q ss_pred             EEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC
Q psy17342        183 NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG  262 (401)
Q Consensus       183 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~  262 (401)
                      .+...+.||.|.-++++...........       +... ..+   +.-...+++|+.+|.|++|...... .....+..
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~-------~~e~-~~v---~~~~~~~~vG~~dg~v~~~n~n~~g-~~~d~~~s   99 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERF-------IDEG-QRV---VTASAKLMVGTSDGAVYVFNWNLEG-AHSDRVCS   99 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhh-------hhcc-eee---cccCceEEeecccceEEEecCCccc-hHHHhhhc
Confidence            4556677888888887642111111000       1111 111   1446789999999999999876221 11111222


Q ss_pred             CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC-CceEEEEECCCCCcEEEEE--ecCCEEEE
Q psy17342        263 HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR-DYVMDVQWSPINPALFATV--EVAGRVDL  339 (401)
Q Consensus       263 ~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~l~~~--~~d~~i~i  339 (401)
                      -...|.++--.-..     +.+..+++.|+.||.|++.-.+.+.....|. .++.....+..++ +++.+  |.|..++.
T Consensus       100 ~~e~i~~~Ip~~~~-----~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~~k~  173 (238)
T KOG2444|consen  100 GEESIDLGIPNGRD-----SSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDE-FLKIADTSHDRVLKK  173 (238)
T ss_pred             ccccceeccccccc-----cceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCc-eEEeeccccchhhhh
Confidence            22333333222221     4588899999999999998888777777776 4444444444444 55665  67777777


Q ss_pred             EeCCCCC
Q psy17342        340 WNLNLDT  346 (401)
Q Consensus       340 wd~~~~~  346 (401)
                      |++....
T Consensus       174 W~ve~~~  180 (238)
T KOG2444|consen  174 WNVEKIK  180 (238)
T ss_pred             cchhhhh
Confidence            7776543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.67  E-value=0.0098  Score=53.32  Aligned_cols=160  Identities=11%  Similarity=0.081  Sum_probs=95.7

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCC-cEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPD-GVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQI  143 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v  143 (401)
                      ...+..-+|+|+++.++...+..       .. ..+.++++++++......  ..+.-..-+|+|++.+++++...||..
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~-------~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~l~f~~~rdg~~  262 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFEL-------GGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSKLAFSSSRDGSP  262 (425)
T ss_pred             CcceeccccCcCCCceEEEEEec-------CCCceEEEEeccCCccceeec--cCCccCCccCCCCCCEEEEEECCCCCc
Confidence            35577788999999988887522       22 569999999776554333  355666789999998888898888875


Q ss_pred             EEE--ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-CCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        144 VLW--DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-DGRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       144 ~iw--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      .||  |+........    ....+..   ..=.|  +|+|..++..+. .|.-.+|-....+.........       ..
T Consensus       263 ~iy~~dl~~~~~~~L----t~~~gi~---~~Ps~--spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~-------~~  326 (425)
T COG0823         263 DIYLMDLDGKNLPRL----TNGFGIN---TSPSW--SPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS-------GG  326 (425)
T ss_pred             cEEEEcCCCCcceec----ccCCccc---cCccC--CCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc-------CC
Confidence            555  5555542210    1111111   13345  899998876654 5554555443222222221111       11


Q ss_pred             ceEEEEeccCCCCeEEEEcCC-ce--EEEEeCC
Q psy17342        221 AVLSLAFPQNDVNNFVVGCED-GN--VYSACRH  250 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d-~~--i~~~~~~  250 (401)
                      .-..-.|+ |++.+++..+.. |.  |.+.++.
T Consensus       327 ~~~~p~~S-pdG~~i~~~~~~~g~~~i~~~~~~  358 (425)
T COG0823         327 GNSNPVWS-PDGDKIVFESSSGGQWDIDKNDLA  358 (425)
T ss_pred             CCcCccCC-CCCCEEEEEeccCCceeeEEeccC
Confidence            11256778 889888877643 44  5555554

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.65  E-value=0.044  Score=49.71  Aligned_cols=250  Identities=13%  Similarity=0.129  Sum_probs=129.4

Q ss_pred             eEEEEeCCCCceEEEEecCCe----EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC------
Q psy17342        122 LSCCFAKFNPYLILGGTYSGQ----IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG------  191 (401)
Q Consensus       122 ~~~~~~~~~~~~l~~g~~dg~----v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg------  191 (401)
                      ....++|++..++++-+..|.    +++.|+.+++.....   +  .  ......+.|  .+++..|+....+.      
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~---i--~--~~~~~~~~W--~~d~~~~~y~~~~~~~~~~~  197 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG---I--E--NPKFSSVSW--SDDGKGFFYTRFDEDQRTSD  197 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE---E--E--EEESEEEEE--CTTSSEEEEEECSTTTSS-C
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc---c--c--ccccceEEE--eCCCCEEEEEEeCccccccc
Confidence            357889988656656555554    999999988543210   0  1  111123888  78877766655433      


Q ss_pred             -----cEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC---C-ceEEEEeCCCC--CCCceeee
Q psy17342        192 -----RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE---D-GNVYSACRHGN--KAGNVECY  260 (401)
Q Consensus       192 -----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d-~~i~~~~~~~~--~~~~~~~~  260 (401)
                           .|..|.+.+..... ...+..   .........+..+ .+++++++...   + ..+++.+....  .......+
T Consensus       198 ~~~~~~v~~~~~gt~~~~d-~lvfe~---~~~~~~~~~~~~s-~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l  272 (414)
T PF02897_consen  198 SGYPRQVYRHKLGTPQSED-ELVFEE---PDEPFWFVSVSRS-KDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL  272 (414)
T ss_dssp             CGCCEEEEEEETTS-GGG--EEEEC----TTCTTSEEEEEE--TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred             CCCCcEEEEEECCCChHhC-eeEEee---cCCCcEEEEEEec-CcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence                 26677765421110 111111   0111125677788 78888765432   2 45788887753  11123333


Q ss_pred             cCCCCce-eeeecCccCCCCCCCcEEEEEeC---CCeEEEEEeeCCCc---eEEEeecCC--ceEEEEECCCCCcEEEEE
Q psy17342        261 EGHEGPV-VGLSSHRAQGHIDFSHLYLTSSY---DWSVKLWNIKENKP---VHSFNEFRD--YVMDVQWSPINPALFATV  331 (401)
Q Consensus       261 ~~~~~~v-~~i~~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~---~~~~~~~~~--~v~~v~~~~~~~~~l~~~  331 (401)
                      ......+ ..+... .      +.+++....   .+.|.-.++.....   ...+..+..  .+..+..  .+..+++..
T Consensus       273 ~~~~~~~~~~v~~~-~------~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~  343 (414)
T PF02897_consen  273 SPREDGVEYYVDHH-G------DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSY  343 (414)
T ss_dssp             EESSSS-EEEEEEE-T------TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEE
T ss_pred             eCCCCceEEEEEcc-C------CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEE
Confidence            3233333 334333 2      345544432   45676677766543   224445555  3545544  444577777


Q ss_pred             ecCC--EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEE-Ee---cCCcEEEEEeccCccceee
Q psy17342        332 EVAG--RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCV-GD---EKGAITMFDVGEVGIACLK  396 (401)
Q Consensus       332 ~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~---~dg~v~iw~~~~~~~~~l~  396 (401)
                      ..++  .|+++++..+.  ............|..+...++++.+.. -+   .-++++.||+.+++++.++
T Consensus       344 ~~~~~~~l~v~~~~~~~--~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k  412 (414)
T PF02897_consen  344 RENGSSRLRVYDLDDGK--ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK  412 (414)
T ss_dssp             EETTEEEEEEEETT-TE--EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred             EECCccEEEEEECCCCc--EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence            6665  57788887222  222333344455667766666654432 22   2367999999998766554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.64  E-value=0.0042  Score=43.16  Aligned_cols=103  Identities=14%  Similarity=0.130  Sum_probs=67.8

Q ss_pred             eEEEEeccC---CCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        222 VLSLAFPQN---DVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       222 v~~~~~~~~---~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      |++|++..-   ..+.|++|+.|..|++|+-.    ..+..+. -...|+++.-..       ...|+-+-.+|+|-+|+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~----e~~~Ei~-e~~~v~~L~~~~-------~~~F~Y~l~NGTVGvY~   69 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD----EIVAEIT-ETDKVTSLCSLG-------GGRFAYALANGTVGVYD   69 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC----cEEEEEe-cccceEEEEEcC-------CCEEEEEecCCEEEEEe
Confidence            455555422   23679999999999999754    2344444 456677777666       36789999999999997


Q ss_pred             eeCCCceEEEeecCCceEEEEECC---CCCcEEEEEecCCEEEE
Q psy17342        299 IKENKPVHSFNEFRDYVMDVQWSP---INPALFATVEVAGRVDL  339 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~v~~v~~~~---~~~~~l~~~~~d~~i~i  339 (401)
                      -  .+.+...+. ...+.++++..   +|..-|++|-.+|.|-+
T Consensus        70 ~--~~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   70 R--SQRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             C--cceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            5  344455554 33355555433   34345788888887753

>KOG4441|consensus

Probab=97.60  E-value=0.013  Score=55.01  Aligned_cols=234  Identities=16%  Similarity=0.125  Sum_probs=123.8

Q ss_pred             CceEEEEecCC------eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC-C-----cEEEeec
Q psy17342        131 PYLILGGTYSG------QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND-G-----RLCSWSL  198 (401)
Q Consensus       131 ~~~l~~g~~dg------~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g-----~i~~wd~  198 (401)
                      ..+++.|+.++      .+..+|..++........     .....-.+++.   .++...++|+.| |     ++..||.
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m-----~~~r~~~~~~~---~~~~lYv~GG~~~~~~~l~~ve~YD~  356 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM-----PSPRCRVGVAV---LNGKLYVVGGYDSGSDRLSSVERYDP  356 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCC-----CcccccccEEE---ECCEEEEEccccCCCcccceEEEecC
Confidence            35677776663      577888887753322211     12222334444   366788888888 3     4667777


Q ss_pred             cCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCce-----EEEEeCCCCCCCceeeecCCCCceeeeecC
Q psy17342        199 EMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGN-----VYSACRHGNKAGNVECYEGHEGPVVGLSSH  273 (401)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-----i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  273 (401)
                      +...    ...+..  ............   -++.+.++|+.||.     +..||...++-..+..+..   +..+....
T Consensus       357 ~~~~----W~~~a~--M~~~R~~~~v~~---l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~---~r~~~gv~  424 (571)
T KOG4441|consen  357 RTNQ----WTPVAP--MNTKRSDFGVAV---LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT---RRSGHGVA  424 (571)
T ss_pred             CCCc----eeccCC--ccCccccceeEE---ECCEEEEEeccccccccccEEEecCCCCcccccCCCCc---ceeeeEEE
Confidence            6422    111111  111111222222   35788899998876     5668877655443333322   22222222


Q ss_pred             ccCCCCCCCcEEEEEeCCC------eEEEEEeeCCC--ceEEEeecCCceEEEEECCCCCcEEEEEecCC-----EEEEE
Q psy17342        274 RAQGHIDFSHLYLTSSYDW------SVKLWNIKENK--PVHSFNEFRDYVMDVQWSPINPALFATVEVAG-----RVDLW  340 (401)
Q Consensus       274 ~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~-----~i~iw  340 (401)
                      .-.     +.+.++||.++      ++..||..+.+  .+..+....... .++.- ++ .+++.||.|+     .+..|
T Consensus       425 ~~~-----g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~-~~-~iYvvGG~~~~~~~~~VE~y  496 (571)
T KOG4441|consen  425 VLG-----GKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAVL-NG-KIYVVGGFDGTSALSSVERY  496 (571)
T ss_pred             EEC-----CEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEEEE-CC-EEEEECCccCCCccceEEEE
Confidence            222     67888888654      56778876643  222222211111 23332 33 3788888776     37778


Q ss_pred             eCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCC-----cEEEEEeccCcccee
Q psy17342        341 NLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG-----AITMFDVGEVGIACL  395 (401)
Q Consensus       341 d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-----~v~iw~~~~~~~~~l  395 (401)
                      |..+.+....... ......+..+.  -+++..++|+.||     +|..||..+.++...
T Consensus       497 dp~~~~W~~v~~m-~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~  553 (571)
T KOG4441|consen  497 DPETNQWTMVAPM-TSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTWTEV  553 (571)
T ss_pred             cCCCCceeEcccC-ccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCCceeeC
Confidence            8887654332111 11112222222  2677778888876     588888888765543

>KOG1897|consensus

Probab=97.59  E-value=0.077  Score=50.99  Aligned_cols=285  Identities=15%  Similarity=0.122  Sum_probs=141.9

Q ss_pred             cCCCCCeEEEEeccCCCCCCCCCcEEEEEeCc-CCCCCce-----EEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEE
Q psy17342         74 STQHPELLLASYHRNKEAPNEPDGVCLIWNTK-FKKTTPE-----FEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWD  147 (401)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~-~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~  147 (401)
                      .+++...+.+.          .+|.+...-+. +++....     ..++..+-..|+.+-++|  +++.|+.-|.=.+-.
T Consensus       266 ~~~~~~yLl~d----------~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng--~lFvGS~~gdSqLi~  333 (1096)
T KOG1897|consen  266 DLQGSRYLLGD----------EDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG--VLFVGSRFGDSQLIK  333 (1096)
T ss_pred             cCCccEEEEec----------CCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc--eEEEeccCCceeeEE
Confidence            44555555555          57766655444 3333222     122334455677777655  788899888878887


Q ss_pred             CCCCCCCceeeccccccCCCCcEEEEEEeecC--CceEEEEEeC---CCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        148 TRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ--NAHNLISISN---DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      +.+..........+.....-+||.+++.....  .+..+++|+.   ||++++....-.-......+++.      -..+
T Consensus       334 L~~e~d~gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G------ikg~  407 (1096)
T KOG1897|consen  334 LNTEPDVGSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG------IKGM  407 (1096)
T ss_pred             ccccCCCCchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC------ccce
Confidence            76654332222222223445689998886443  4567887764   88888875322111111111111      1122


Q ss_pred             EEEE--ecc--------------------------------CCCCeEEEEcCCc---------eEEEEeCCCCCCCceee
Q psy17342        223 LSLA--FPQ--------------------------------NDVNNFVVGCEDG---------NVYSACRHGNKAGNVEC  259 (401)
Q Consensus       223 ~~~~--~~~--------------------------------~~~~~l~~~~~d~---------~i~~~~~~~~~~~~~~~  259 (401)
                      +.+.  +.+                                .+.+.++++.-.+         .|++++-.+    ....
T Consensus       408 w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~~----~~~~  483 (1096)
T KOG1897|consen  408 WSLKSMVDENYDNYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSAG----LRSE  483 (1096)
T ss_pred             eEeeccccccCCcEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcchh----hhhc
Confidence            2222  111                                1222222222111         122222110    1112


Q ss_pred             ecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEe--ecCCceEEEEECCC--CCc---EEEEEe
Q psy17342        260 YEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN--EFRDYVMDVQWSPI--NPA---LFATVE  332 (401)
Q Consensus       260 ~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~v~~~~~--~~~---~l~~~~  332 (401)
                      +.. .+.++......+      ...++.++.++.+...++..+. +....  .....|.|+.++|-  ++.   +++.|.
T Consensus       484 W~~-p~~~ti~~~~~n------~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~  555 (1096)
T KOG1897|consen  484 WRP-PGKITIGVVSAN------ASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGL  555 (1096)
T ss_pred             ccC-CCceEEEEEeec------ceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEe
Confidence            221 122222222222      2345555556666666666544 22221  23567899999976  333   788888


Q ss_pred             cCCEEEEEeCCCCCCCcceEEeecC---CCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        333 VAGRVDLWNLNLDTEVPATSAIVEG---APALSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       333 ~d~~i~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      .+..+.+.-......... ......   ...|.-..|-.|..+|.++..||.+.-|-+..
T Consensus       556 Ws~~~~~l~~~pd~~~~~-~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~  614 (1096)
T KOG1897|consen  556 WSDISMILTFLPDLILIT-HEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDI  614 (1096)
T ss_pred             ecceEEEEEECCCcceee-eeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence            877666554332221111 111111   23355556666789999999999987766544

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.58  E-value=0.0068  Score=57.83  Aligned_cols=150  Identities=11%  Similarity=0.086  Sum_probs=94.6

Q ss_pred             CCCCeEEEE-cCCceEEEEeCCCCCCCceeeecCCCCc-eeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC-ceE
Q psy17342        230 NDVNNFVVG-CEDGNVYSACRHGNKAGNVECYEGHEGP-VVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK-PVH  306 (401)
Q Consensus       230 ~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~  306 (401)
                      .+.++|+.. .....++-.|+.  .++.+..+..|... |..++-........ +.....|-.+..+..||.|-.. .+.
T Consensus       491 ~d~~mil~~~~~~~~ly~mDLe--~GKVV~eW~~~~~~~v~~~~p~~K~aqlt-~e~tflGls~n~lfriDpR~~~~k~v  567 (794)
T PF08553_consen  491 QDRNMILLDPNNPNKLYKMDLE--RGKVVEEWKVHDDIPVVDIAPDSKFAQLT-NEQTFLGLSDNSLFRIDPRLSGNKLV  567 (794)
T ss_pred             cccceEeecCCCCCceEEEecC--CCcEEEEeecCCCcceeEecccccccccC-CCceEEEECCCceEEeccCCCCCcee
Confidence            344444443 345678888887  55678888877644 55554321111111 2344556668899999998632 221


Q ss_pred             EEe----ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcE
Q psy17342        307 SFN----EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAI  382 (401)
Q Consensus       307 ~~~----~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  382 (401)
                      .-.    .......|++-+.+|  .||.|+.+|.||+||-. +....+.  ..+-..+|..+..+.||++|++.+. ..+
T Consensus       568 ~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~~AKT~--lp~lG~pI~~iDvt~DGkwilaTc~-tyL  641 (794)
T PF08553_consen  568 DSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GKRAKTA--LPGLGDPIIGIDVTADGKWILATCK-TYL  641 (794)
T ss_pred             eccccccccCCCceEEEecCCc--eEEEEeCCCcEEeeccc-chhhhhc--CCCCCCCeeEEEecCCCcEEEEeec-ceE
Confidence            111    124457788888888  58999999999999943 3221111  1133689999999999999986664 457


Q ss_pred             EEEEec
Q psy17342        383 TMFDVG  388 (401)
Q Consensus       383 ~iw~~~  388 (401)
                      .+++..
T Consensus       642 lLi~t~  647 (794)
T PF08553_consen  642 LLIDTL  647 (794)
T ss_pred             EEEEEe
Confidence            777763

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1897|consensus

Probab=97.58  E-value=0.082  Score=50.82  Aligned_cols=123  Identities=13%  Similarity=0.067  Sum_probs=68.8

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCC--CCc---eEEEEec
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF--NPY---LILGGTY  139 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~---~l~~g~~  139 (401)
                      ...++....+.+...++.++          .++.+...+...+.............|.|+.++|.  +++   +++.|..
T Consensus       487 p~~~ti~~~~~n~sqVvvA~----------~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~W  556 (1096)
T KOG1897|consen  487 PGKITIGVVSANASQVVVAG----------GGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLW  556 (1096)
T ss_pred             CCceEEEEEeecceEEEEec----------CccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEee
Confidence            34444444444444555555          35555555665444222222223578999999975  444   8899988


Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccC
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEM  200 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~  200 (401)
                      +..+.+.-......... ...+....-...|.-..+  -.+..+|+++..||.+..+-+..
T Consensus       557 s~~~~~l~~~pd~~~~~-~~~l~~~~iPRSIl~~~~--e~d~~yLlvalgdG~l~~fv~d~  614 (1096)
T KOG1897|consen  557 SDISMILTFLPDLILIT-HEQLSGEIIPRSILLTTF--EGDIHYLLVALGDGALLYFVLDI  614 (1096)
T ss_pred             cceEEEEEECCCcceee-eeccCCCccchheeeEEe--eccceEEEEEcCCceEEEEEEEc
Confidence            77766554432221111 111111222334555555  45688999999999988776643

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.56  E-value=0.039  Score=46.83  Aligned_cols=238  Identities=14%  Similarity=0.159  Sum_probs=123.4

Q ss_pred             CCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCC
Q psy17342         75 TQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKT  154 (401)
Q Consensus        75 ~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~  154 (401)
                      ..++.|+.|+          .+| +.+++..... .... ......|..+...|+- +.+++- .|+.+.++++..-...
T Consensus         5 ~~~~~L~vGt----------~~G-l~~~~~~~~~-~~~~-i~~~~~I~ql~vl~~~-~~llvL-sd~~l~~~~L~~l~~~   69 (275)
T PF00780_consen    5 SWGDRLLVGT----------EDG-LYVYDLSDPS-KPTR-ILKLSSITQLSVLPEL-NLLLVL-SDGQLYVYDLDSLEPV   69 (275)
T ss_pred             cCCCEEEEEE----------CCC-EEEEEecCCc-ccee-EeecceEEEEEEeccc-CEEEEE-cCCccEEEEchhhccc
Confidence            3567888888          677 8999993222 2222 2224459999999965 444443 3699999999865543


Q ss_pred             ceeeccc--------cccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCC--ccccccccccccCCccceEE
Q psy17342        155 PVHRTPL--------SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSP--QETRDLQYNNKQTKNLAVLS  224 (401)
Q Consensus       155 ~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~v~~  224 (401)
                      .......        ........+...+......+...+......+|.+|........  ....++.      -...+.+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~------lp~~~~~  143 (275)
T PF00780_consen   70 STSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS------LPDPPSS  143 (275)
T ss_pred             cccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE------cCCCcEE
Confidence            2110000        0012223344333111234444444445558999988752111  1111111      3357888


Q ss_pred             EEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCC----------CCceeeeecCccCCCCCCCcEEEEEeCCCeE
Q psy17342        225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGH----------EGPVVGLSSHRAQGHIDFSHLYLTSSYDWSV  294 (401)
Q Consensus       225 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~----------~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i  294 (401)
                      ++|.   ++.+++|..++ ..+.|+.......+......          ..++..+... +      +.+|++ . |..-
T Consensus       144 i~~~---~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~e~Ll~-~-~~~g  210 (275)
T PF00780_consen  144 IAFL---GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-D------NEFLLC-Y-DNIG  210 (275)
T ss_pred             EEEe---CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-C------ceEEEE-e-cceE
Confidence            8887   56777777554 66667764332222211111          1223223332 2      345553 2 3333


Q ss_pred             EEEEeeCCCceE--EEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceE
Q psy17342        295 KLWNIKENKPVH--SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATS  352 (401)
Q Consensus       295 ~iwd~~~~~~~~--~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  352 (401)
                      .+.|. .|++.+  .+.- ...+.++++..  + ++++.+ ++.|.||++.+++.++.+.
T Consensus       211 ~fv~~-~G~~~r~~~i~W-~~~p~~~~~~~--p-yli~~~-~~~iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  211 VFVNK-NGEPSRKSTIQW-SSAPQSVAYSS--P-YLIAFS-SNSIEVRSLETGELVQTIP  264 (275)
T ss_pred             EEEcC-CCCcCcccEEEc-CCchhEEEEEC--C-EEEEEC-CCEEEEEECcCCcEEEEEE
Confidence            34444 454443  3332 33555666643  3 344444 4569999999987665543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4441|consensus

Probab=97.54  E-value=0.0087  Score=56.04  Aligned_cols=221  Identities=14%  Similarity=0.096  Sum_probs=115.4

Q ss_pred             CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC------CeEEEEECCCCCCCceeeccccccCCCCc
Q psy17342         96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS------GQIVLWDTRVQKKTPVHRTPLSVMAHTHP  169 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~  169 (401)
                      -..+..||..++.............-.+++... + .+.++|+.+      .++..||....+-...  .++  ......
T Consensus       300 ~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~--a~M--~~~R~~  373 (571)
T KOG4441|consen  300 LRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRTNQWTPV--APM--NTKRSD  373 (571)
T ss_pred             cceeEEecCCcCcEeecCCCCcccccccEEEEC-C-EEEEEccccCCCcccceEEEecCCCCceecc--CCc--cCcccc
Confidence            468889999876433333333344455666664 3 678888888      3477788777663322  112  222222


Q ss_pred             EEEEEEeecCCceEEEEEeCCCc-----EEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCce-
Q psy17342        170 VFCMSVIGTQNAHNLISISNDGR-----LCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGN-  243 (401)
Q Consensus       170 v~~~~~~~~~~~~~l~s~~~dg~-----i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-  243 (401)
                      .....    -+|...+.|+.||.     +-.||..+..     .....    .........+...-++.+.++|+.++. 
T Consensus       374 ~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~~~-----W~~va----~m~~~r~~~gv~~~~g~iYi~GG~~~~~  440 (571)
T KOG4441|consen  374 FGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVTNK-----WTPVA----PMLTRRSGHGVAVLGGKLYIIGGGDGSS  440 (571)
T ss_pred             ceeEE----ECCEEEEEeccccccccccEEEecCCCCc-----ccccC----CCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence            22222    37888899999875     5566665411     11110    011122222222245778888875543 


Q ss_pred             -----EEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC-----eEEEEEeeCCCceEE--Eeec
Q psy17342        244 -----VYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW-----SVKLWNIKENKPVHS--FNEF  311 (401)
Q Consensus       244 -----i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~--~~~~  311 (401)
                           +..||...+.-..+..+..-........+.        +.+++.|+.|+     +|..||..+.+-...  +...
T Consensus       441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~--------~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~  512 (571)
T KOG4441|consen  441 NCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLN--------GKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP  512 (571)
T ss_pred             cccceEEEEcCCCCceeecCCcccccccceEEEEC--------CEEEEECCccCCCccceEEEEcCCCCceeEcccCccc
Confidence                 567887765543333333222222222222        57888888776     367788766543221  2222


Q ss_pred             CCceEEEEECCCCCcEEEEEecCC-----EEEEEeCCCCC
Q psy17342        312 RDYVMDVQWSPINPALFATVEVAG-----RVDLWNLNLDT  346 (401)
Q Consensus       312 ~~~v~~v~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~  346 (401)
                      ...+..+   ..+..+++.|+.||     +|..||..+.+
T Consensus       513 rs~~g~~---~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  513 RSAVGVV---VLGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             cccccEE---EECCEEEEEecccCccccceeEEcCCCCCc
Confidence            2222222   22224788888775     56667666544

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.48  E-value=0.012  Score=54.29  Aligned_cols=104  Identities=7%  Similarity=0.065  Sum_probs=70.6

Q ss_pred             CCCCeEEEEcCCceEEEEeCCCC---CCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe-CCCeEEEEEeeCCCc-
Q psy17342        230 NDVNNFVVGCEDGNVYSACRHGN---KAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS-YDWSVKLWNIKENKP-  304 (401)
Q Consensus       230 ~~~~~l~~~~~d~~i~~~~~~~~---~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~-  304 (401)
                      +++++..+  .++.|.+.|....   ....+..+. -......+.++|+      ++++++++ .+.+|.|.|+.+.+. 
T Consensus       286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPD------GkylyVanklS~tVSVIDv~k~k~~  356 (635)
T PRK02888        286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPD------GKYFIANGKLSPTVTVIDVRKLDDL  356 (635)
T ss_pred             hCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCC------CCEEEEeCCCCCcEEEEEChhhhhh
Confidence            45666555  3567999998741   122333333 3455678999999      56655554 589999999987543 


Q ss_pred             -----------eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        305 -----------VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       305 -----------~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                                 +.+... .......+|.++|. .+.+..-|..|-.|++..
T Consensus       357 ~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        357 FDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhccCCccceEEEeecc-CCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence                       333333 22345688999986 788888999999999875

>KOG4640|consensus

Probab=97.48  E-value=0.00068  Score=60.85  Aligned_cols=94  Identities=11%  Similarity=0.122  Sum_probs=76.4

Q ss_pred             ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCcee-eeecCccCCCCCCCcEEEEEeCCCeEEEE
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVV-GLSSHRAQGHIDFSHLYLTSSYDWSVKLW  297 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~~~~~~~l~s~~~d~~i~iw  297 (401)
                      ...+..+.|+ |.-..+|.++.+|.+.++.++-   +.+-++.-|..+++ +++|.|+      |+++|.|-.||+|++.
T Consensus        20 ~~~i~~~ewn-P~~dLiA~~t~~gelli~R~n~---qRlwtip~p~~~v~~sL~W~~D------GkllaVg~kdG~I~L~   89 (665)
T KOG4640|consen   20 PINIKRIEWN-PKMDLIATRTEKGELLIHRLNW---QRLWTIPIPGENVTASLCWRPD------GKLLAVGFKDGTIRLH   89 (665)
T ss_pred             ccceEEEEEc-CccchhheeccCCcEEEEEecc---ceeEeccCCCCccceeeeecCC------CCEEEEEecCCeEEEE
Confidence            4568889999 8899999999999998887652   24666666777777 9999999      8999999999999999


Q ss_pred             EeeCCCceEEEe-ecCCceEEEEECC
Q psy17342        298 NIKENKPVHSFN-EFRDYVMDVQWSP  322 (401)
Q Consensus       298 d~~~~~~~~~~~-~~~~~v~~v~~~~  322 (401)
                      |+.++..+..+. .....|.++-|+|
T Consensus        90 Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   90 DVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EccCCCceeccccccccchheeeccc
Confidence            999988777632 1356788888875

>PHA02713 hypothetical protein; Provisional

Probab=97.45  E-value=0.012  Score=55.18  Aligned_cols=152  Identities=12%  Similarity=0.034  Sum_probs=78.5

Q ss_pred             CCCeEEEEcCCc-----eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC-------------
Q psy17342        231 DVNNFVVGCEDG-----NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW-------------  292 (401)
Q Consensus       231 ~~~~l~~~~~d~-----~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~-------------  292 (401)
                      ++.+.+.|+.++     .+..||...+.-..+..+.........+..  +      +.+.+.|+.++             
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~------g~IYviGG~~~~~~~~~~~~~~~~  422 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--D------QYIYIIGGRTEHIDYTSVHHMNSI  422 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--C------CEEEEEeCCCcccccccccccccc
Confidence            567778887654     377888775433222222211111111222  1      57777777652             


Q ss_pred             ----------eEEEEEeeCCC--ceEEEeecCCceEEEEECCCCCcEEEEEecC------CEEEEEeCCC-CCCCcceEE
Q psy17342        293 ----------SVKLWNIKENK--PVHSFNEFRDYVMDVQWSPINPALFATVEVA------GRVDLWNLNL-DTEVPATSA  353 (401)
Q Consensus       293 ----------~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d------~~i~iwd~~~-~~~~~~~~~  353 (401)
                                .+..||..+.+  .+..+....... +++ .-+++ +++.|+.+      ..+..||..+ .+-......
T Consensus       423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m  499 (557)
T PHA02713        423 DMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT  499 (557)
T ss_pred             cccccccccceEEEECCCCCeEeecCCCCcccccC-cEE-EECCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEcccc
Confidence                      46677776542  111121111111 122 22344 66777654      2467899887 443211111


Q ss_pred             eecCCCCeEEEEecCCCcEEEEEecCC--cEEEEEeccCccceee
Q psy17342        354 IVEGAPALSRVTWTPNGTQLCVGDEKG--AITMFDVGEVGIACLK  396 (401)
Q Consensus       354 ~~~~~~~v~~~~~s~~g~~l~~~~~dg--~v~iw~~~~~~~~~l~  396 (401)
                      +. .......+.+  +|++.++|+.+|  .+-.||+.+.++..+.
T Consensus       500 ~~-~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~  541 (557)
T PHA02713        500 ES-RLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHIC  541 (557)
T ss_pred             Cc-ccccceeEEE--CCEEEEEeeecceeehhhcCcccccccchh
Confidence            00 1112222222  788889999888  7889999998766554

>smart00320 WD40 WD40 repeats

Probab=97.43  E-value=0.00031  Score=38.60  Aligned_cols=37  Identities=27%  Similarity=0.547  Sum_probs=32.0

Q ss_pred             ceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        256 NVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       256 ~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      +...+..|...|.++.|.|.      +.++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPD------GKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCC------CCEEEEecCCCeEEEcC
Confidence            35566778899999999998      68999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PHA02713 hypothetical protein; Provisional

Probab=97.35  E-value=0.023  Score=53.34  Aligned_cols=222  Identities=9%  Similarity=0.037  Sum_probs=104.5

Q ss_pred             cEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC------CeEEEEECCCCCCCceeeccccccCCCCcE
Q psy17342         97 GVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS------GQIVLWDTRVQKKTPVHRTPLSVMAHTHPV  170 (401)
Q Consensus        97 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  170 (401)
                      ..+..||..+++............-.+++..  +..+.+.|+.+      ..+..||..+..-.....  +  .......
T Consensus       272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~--m--~~~R~~~  345 (557)
T PHA02713        272 PCILVYNINTMEYSVISTIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPP--M--IKNRCRF  345 (557)
T ss_pred             CCEEEEeCCCCeEEECCCCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCC--C--cchhhce
Confidence            3567788876432211111111111223332  33666777643      347788877664321111  1  1111122


Q ss_pred             EEEEEeecCCceEEEEEeCCC-----cEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCc---
Q psy17342        171 FCMSVIGTQNAHNLISISNDG-----RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG---  242 (401)
Q Consensus       171 ~~~~~~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---  242 (401)
                      ..+.    -++...+.|+.++     .+..||..+.. -.....++.     .......+.   -++.+.++|+.++   
T Consensus       346 ~~~~----~~g~IYviGG~~~~~~~~sve~Ydp~~~~-W~~~~~mp~-----~r~~~~~~~---~~g~IYviGG~~~~~~  412 (557)
T PHA02713        346 SLAV----IDDTIYAIGGQNGTNVERTIECYTMGDDK-WKMLPDMPI-----ALSSYGMCV---LDQYIYIIGGRTEHID  412 (557)
T ss_pred             eEEE----ECCEEEEECCcCCCCCCceEEEEECCCCe-EEECCCCCc-----ccccccEEE---ECCEEEEEeCCCcccc
Confidence            2222    2677777777654     37778876421 111111111     111111222   2567777777542   


Q ss_pred             --------------------eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC------CeEEE
Q psy17342        243 --------------------NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD------WSVKL  296 (401)
Q Consensus       243 --------------------~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d------~~i~i  296 (401)
                                          .+..||...++-..+..+....... +++...       +.+.+.|+.+      ..+..
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~~~~-------~~IYv~GG~~~~~~~~~~ve~  484 (557)
T PHA02713        413 YTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVVSHK-------DDIYVVCDIKDEKNVKTCIFR  484 (557)
T ss_pred             cccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC-cEEEEC-------CEEEEEeCCCCCCccceeEEE
Confidence                                4667777654432222222111111 122111       5677777754      24677


Q ss_pred             EEeeC-CC--ceEEEeecCCceEEEEECCCCCcEEEEEecCC--EEEEEeCCCCCCC
Q psy17342        297 WNIKE-NK--PVHSFNEFRDYVMDVQWSPINPALFATVEVAG--RVDLWNLNLDTEV  348 (401)
Q Consensus       297 wd~~~-~~--~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~  348 (401)
                      ||..+ .+  .+..+.........+.+  ++ .+++.|+.++  .+..||..+.+-.
T Consensus       485 Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        485 YNTNTYNGWELITTTESRLSALHTILH--DN-TIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             ecCCCCCCeeEccccCcccccceeEEE--CC-EEEEEeeecceeehhhcCccccccc
Confidence            88876 32  22333322222222322  44 3888999888  7778888776643

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.12  Score=46.19  Aligned_cols=241  Identities=13%  Similarity=0.092  Sum_probs=139.8

Q ss_pred             CeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCce-EEEEEeCCCcEEEeec
Q psy17342        120 PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAH-NLISISNDGRLCSWSL  198 (401)
Q Consensus       120 ~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~  198 (401)
                      ....+...|++....++-.....+...+........  .  .  ..-...-..++.  ++.+. ..+....++.|.+.|.
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~--~--~--~~g~~~p~~i~v--~~~~~~vyv~~~~~~~v~vid~  103 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQ--S--L--SVGGVYPAGVAV--NPAGNKVYVTTGDSNTVSVIDT  103 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeee--e--c--cCCCccccceee--CCCCCeEEEecCCCCeEEEEcC
Confidence            455677777775555444333344444443111110  0  0  000022334555  56666 4445555688999995


Q ss_pred             cCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC---CceEEEEeCCCCCCCceeeecCCCCceeeeecCcc
Q psy17342        199 EMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE---DGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRA  275 (401)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  275 (401)
                      .... ......        .......++++ ++++.+.++..   ++.+.+.|....+  .......-..+ ..+++.|.
T Consensus       104 ~~~~-~~~~~~--------vG~~P~~~~~~-~~~~~vYV~n~~~~~~~vsvid~~t~~--~~~~~~vG~~P-~~~a~~p~  170 (381)
T COG3391         104 ATNT-VLGSIP--------VGLGPVGLAVD-PDGKYVYVANAGNGNNTVSVIDAATNK--VTATIPVGNTP-TGVAVDPD  170 (381)
T ss_pred             cccc-eeeEee--------eccCCceEEEC-CCCCEEEEEecccCCceEEEEeCCCCe--EEEEEecCCCc-ceEEECCC
Confidence            5311 111111        11256678888 67766665544   6778888876443  34443333344 78999998


Q ss_pred             CCCCCCCc-EEEEEeCCCeEEEEEeeCCCceE-----EEeecCCceEEEEECCCCCcEEEEEecC--CEEEEEeCCCCCC
Q psy17342        276 QGHIDFSH-LYLTSSYDWSVKLWNIKENKPVH-----SFNEFRDYVMDVQWSPINPALFATVEVA--GRVDLWNLNLDTE  347 (401)
Q Consensus       276 ~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~~v~~v~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~  347 (401)
                            +. .+++-..++.|.+.|........     .... ......+.++|++..+.++...+  +.+...|..++..
T Consensus       171 ------g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v  243 (381)
T COG3391         171 ------GNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV-GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV  243 (381)
T ss_pred             ------CCeEEEEecCCCeEEEEeCCCcceecccccccccc-CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence                  55 55555578999999976554432     1222 23346789999998555555444  5888888887654


Q ss_pred             CcceEEeecCCCCeEEEEecCCCcEEEEEec-CCcEEEEEeccC
Q psy17342        348 VPATSAIVEGAPALSRVTWTPNGTQLCVGDE-KGAITMFDVGEV  390 (401)
Q Consensus       348 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~v~iw~~~~~  390 (401)
                      .... ...... ....+..+|+|.++.+... .+.+.+-|..+.
T Consensus       244 ~~~~-~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         244 TATD-LPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             EEec-cccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            3321 112222 4566899999999988844 477888888776

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.27  E-value=0.097  Score=44.76  Aligned_cols=231  Identities=12%  Similarity=0.042  Sum_probs=123.3

Q ss_pred             EEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC
Q psy17342         71 MDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV  150 (401)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~  150 (401)
                      -.|.|+...|+-+..         ..+.|.-|+..+++..   .+...+.+.++..-..+ ..|+++  +.-+.+++.+.
T Consensus        30 P~w~~~~~~L~w~DI---------~~~~i~r~~~~~g~~~---~~~~p~~~~~~~~~d~~-g~Lv~~--~~g~~~~~~~~   94 (307)
T COG3386          30 PVWDPDRGALLWVDI---------LGGRIHRLDPETGKKR---VFPSPGGFSSGALIDAG-GRLIAC--EHGVRLLDPDT   94 (307)
T ss_pred             ccCcCCCCEEEEEeC---------CCCeEEEecCCcCceE---EEECCCCcccceeecCC-CeEEEE--ccccEEEeccC
Confidence            357788887777764         6889999998755432   34445666666655444 345444  23467777754


Q ss_pred             CCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC---------CcEEEeeccCCCCCccccccccccccCCccc
Q psy17342        151 QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND---------GRLCSWSLEMLSSPQETRDLQYNNKQTKNLA  221 (401)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  221 (401)
                      +........ ..-......-+.+..  .++|.+.++....         ..-.+|-+.-.+...   ++    ...+-..
T Consensus        95 ~~~~t~~~~-~~~~~~~~r~ND~~v--~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~---~l----~~~~~~~  164 (307)
T COG3386          95 GGKITLLAE-PEDGLPLNRPNDGVV--DPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVV---RL----LDDDLTI  164 (307)
T ss_pred             CceeEEecc-ccCCCCcCCCCceeE--cCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEE---Ee----ecCcEEe
Confidence            443111110 000111133445555  6677655543330         011233333101111   11    1112334


Q ss_pred             eEEEEeccCCCCeEEEE-cCCceEEEEeCCCCCC---Cc--eeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC-eE
Q psy17342        222 VLSLAFPQNDVNNFVVG-CEDGNVYSACRHGNKA---GN--VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW-SV  294 (401)
Q Consensus       222 v~~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~---~~--~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~-~i  294 (401)
                      -+.|+|+ |+++.++.+ +..+.|+.+++.....   ..  ...+....+..-.++...+      +.+.+++..+| .|
T Consensus       165 ~NGla~S-pDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad------G~lw~~a~~~g~~v  237 (307)
T COG3386         165 PNGLAFS-PDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD------GNLWVAAVWGGGRV  237 (307)
T ss_pred             cCceEEC-CCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC------CCEEEecccCCceE
Confidence            5689999 788766655 5557888887752111   11  1111122333344444444      56665544444 89


Q ss_pred             EEEEeeCCCceEEEeecCCceEEEEEC-CCCCcEEEEEecC
Q psy17342        295 KLWNIKENKPVHSFNEFRDYVMDVQWS-PINPALFATVEVA  334 (401)
Q Consensus       295 ~iwd~~~~~~~~~~~~~~~~v~~v~~~-~~~~~~l~~~~~d  334 (401)
                      .+|+.. ++++..+..+...+++++|- |+.+.+++++...
T Consensus       238 ~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         238 VRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             EEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence            999987 89998888765778888885 4455566665543

>KOG2079|consensus

Probab=97.26  E-value=0.0016  Score=62.36  Aligned_cols=105  Identities=15%  Similarity=0.187  Sum_probs=76.7

Q ss_pred             CcEEEEEeCCCeEEEEEeeCC-CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCC
Q psy17342        282 SHLYLTSSYDWSVKLWNIKEN-KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPA  360 (401)
Q Consensus       282 ~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  360 (401)
                      +..++.|+..|.+...|.... .+...=..-.++|++++|+.+|. +++.|-.+|.|.+||+..++....+.........
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            467888888899999988653 22222222367899999999997 7888989999999999998877766544333445


Q ss_pred             eEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        361 LSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       361 v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      +..+.+..++..+.++...|.  +|++.-
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~lv~  204 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKLVF  204 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence            555666667777888888886  666543

>KOG2395|consensus

Probab=97.22  E-value=0.017  Score=51.25  Aligned_cols=100  Identities=12%  Similarity=0.144  Sum_probs=68.2

Q ss_pred             EEEEcCCceEEEEeCCCCCCCceeeecCCC----CceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee
Q psy17342        235 FVVGCEDGNVYSACRHGNKAGNVECYEGHE----GPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE  310 (401)
Q Consensus       235 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~----~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  310 (401)
                      -++|-.+..|.-||.+-+....+..-++|.    ....|.+-..       ..+++.||.+|.||+||--..+....+++
T Consensus       397 TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~-------sG~IvvgS~~GdIRLYdri~~~AKTAlPg  469 (644)
T KOG2395|consen  397 TLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTE-------SGYIVVGSLKGDIRLYDRIGRRAKTALPG  469 (644)
T ss_pred             cEEeecCCceEEecccccCcceeeeeeccccccccccceeeecC-------CceEEEeecCCcEEeehhhhhhhhhcccc
Confidence            456778888999998854432333333332    2344444433       46899999999999999733333344677


Q ss_pred             cCCceEEEEECCCCCcEEEEEecCCEEEEEeCC
Q psy17342        311 FRDYVMDVQWSPINPALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       311 ~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~  343 (401)
                      -..+|..|..+.+|+++|+++  +..+.+-++.
T Consensus       470 LG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~  500 (644)
T KOG2395|consen  470 LGDAIKHVDVTADGKWILATC--KTYLLLIDTL  500 (644)
T ss_pred             cCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence            788999999999999776665  5577777653

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.051  Score=48.46  Aligned_cols=161  Identities=14%  Similarity=0.127  Sum_probs=105.1

Q ss_pred             ceEEEEeccCCCC-eEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe--CCCeEEEE
Q psy17342        221 AVLSLAFPQNDVN-NFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS--YDWSVKLW  297 (401)
Q Consensus       221 ~v~~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~--~d~~i~iw  297 (401)
                      ....++++ +.+. .++....++.|.+.|.....  .......-. ....+++.|..     +...++-.  .++++.+.
T Consensus        75 ~p~~i~v~-~~~~~vyv~~~~~~~v~vid~~~~~--~~~~~~vG~-~P~~~~~~~~~-----~~vYV~n~~~~~~~vsvi  145 (381)
T COG3391          75 YPAGVAVN-PAGNKVYVTTGDSNTVSVIDTATNT--VLGSIPVGL-GPVGLAVDPDG-----KYVYVANAGNGNNTVSVI  145 (381)
T ss_pred             cccceeeC-CCCCeEEEecCCCCeEEEEcCcccc--eeeEeeecc-CCceEEECCCC-----CEEEEEecccCCceEEEE
Confidence            34566777 4555 55556667889999865332  222222111 44678888884     34444444  36899999


Q ss_pred             EeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCc-ceEEeecCCCCeEEEEecCCCcEEEEE
Q psy17342        298 NIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVP-ATSAIVEGAPALSRVTWTPNGTQLCVG  376 (401)
Q Consensus       298 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~  376 (401)
                      |..+.+.+.+...-..+ ..++++|+|..++++-..++.|.+.|........ .......-......+.++|+|.++.+.
T Consensus       146 d~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~  224 (381)
T COG3391         146 DAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVA  224 (381)
T ss_pred             eCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEE
Confidence            99888888885543344 8999999998666666688999999977654431 110011223345678999999977665


Q ss_pred             ecC---CcEEEEEeccCc
Q psy17342        377 DEK---GAITMFDVGEVG  391 (401)
Q Consensus       377 ~~d---g~v~iw~~~~~~  391 (401)
                      ...   +.+...|..++.
T Consensus       225 ~~~~~~~~v~~id~~~~~  242 (381)
T COG3391         225 NDGSGSNNVLKIDTATGN  242 (381)
T ss_pred             eccCCCceEEEEeCCCce
Confidence            443   588888888764

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.20  E-value=0.14  Score=45.11  Aligned_cols=230  Identities=13%  Similarity=0.122  Sum_probs=96.8

Q ss_pred             ceEEEEecCCeEEEEECCCCCCCceeeccccc---c---CCCCcEEEEEEeecCCceEEEEEe--CC----CcEEEeecc
Q psy17342        132 YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSV---M---AHTHPVFCMSVIGTQNAHNLISIS--ND----GRLCSWSLE  199 (401)
Q Consensus       132 ~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~---~---~~~~~v~~~~~~~~~~~~~l~s~~--~d----g~i~~wd~~  199 (401)
                      .+++-|-.++.|.|.|+.+....+.....+.-   .   +-..+-+.-+   -|+|..++++-  .+    |.+.+.|-+
T Consensus        89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hc---lp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHC---LPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE----SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeee---cCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            35555657889999999876655543322210   1   1111222222   46777777752  22    335566654


Q ss_pred             CCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc--------------------CCceEEEEeCCCCCCCceee
Q psy17342        200 MLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC--------------------EDGNVYSACRHGNKAGNVEC  259 (401)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--------------------~d~~i~~~~~~~~~~~~~~~  259 (401)
                      +.. .....+..    .....--+.+-|. +..+.+++..                    ....+.+||+...+  .+++
T Consensus       166 tf~-v~g~We~~----~~~~~~gYDfw~q-pr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~--~~Q~  237 (461)
T PF05694_consen  166 TFE-VKGRWEKD----RGPQPFGYDFWYQ-PRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK--LLQT  237 (461)
T ss_dssp             T---EEEE--SB-----TT------EEEE-TTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE--EEEE
T ss_pred             ccc-ccceeccC----CCCCCCCCCeEEc-CCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc--EeeE
Confidence            311 11111110    0112234556666 5556665542                    34679999998554  4444


Q ss_pred             ecCC-C-CceeeeecC--ccCCCCCCCcEEEEEeCCCeEEEEEe-eCCC----ceEEEee-----------------cCC
Q psy17342        260 YEGH-E-GPVVGLSSH--RAQGHIDFSHLYLTSSYDWSVKLWNI-KENK----PVHSFNE-----------------FRD  313 (401)
Q Consensus       260 ~~~~-~-~~v~~i~~~--~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~----~~~~~~~-----------------~~~  313 (401)
                      +.-- . .....|.|.  |..     ..-|+.+....+|..|-- ..++    .+..+..                 -..
T Consensus       238 idLg~~g~~pLEvRflH~P~~-----~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~  312 (461)
T PF05694_consen  238 IDLGEEGQMPLEVRFLHDPDA-----NYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPP  312 (461)
T ss_dssp             EES-TTEEEEEEEEE-SSTT-------EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE--
T ss_pred             EecCCCCCceEEEEecCCCCc-----cceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCC
Confidence            4322 2 223345444  442     344555555566655543 3332    2222221                 124


Q ss_pred             ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceE-EeecC---------------CCCeEEEEecCCCcEEEEEe
Q psy17342        314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATS-AIVEG---------------APALSRVTWTPNGTQLCVGD  377 (401)
Q Consensus       314 ~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~---------------~~~v~~~~~s~~g~~l~~~~  377 (401)
                      -|+.+..|.|.+++.+++=..|.|+.||+.......... ...++               .....-+..|.||+.|...+
T Consensus       313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            578999999999888888889999999998755432221 11111               11235678889998887654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.16  E-value=0.17  Score=45.55  Aligned_cols=197  Identities=10%  Similarity=0.113  Sum_probs=94.1

Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccccc--ccCCc
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNN--KQTKN  219 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~--~~~~~  219 (401)
                      .|.||+........     +....  +.+.++.|  .. ...|+....||.++++|+..  ..  .+.+....  .....
T Consensus        62 ~I~iys~sG~ll~~-----i~w~~--~~iv~~~w--t~-~e~LvvV~~dG~v~vy~~~G--~~--~fsl~~~i~~~~v~e  127 (410)
T PF04841_consen   62 SIQIYSSSGKLLSS-----IPWDS--GRIVGMGW--TD-DEELVVVQSDGTVRVYDLFG--EF--QFSLGEEIEEEKVLE  127 (410)
T ss_pred             EEEEECCCCCEeEE-----EEECC--CCEEEEEE--CC-CCeEEEEEcCCEEEEEeCCC--ce--eechhhhccccCccc
Confidence            48888876653221     12223  78999999  55 45677778999999999863  12  11111100  00011


Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceee----------eecCccCCCCCCCcEEEEEe
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVG----------LSSHRAQGHIDFSHLYLTSS  289 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~----------i~~~~~~~~~~~~~~l~s~~  289 (401)
                      ..+....+. .+|  +++-+.++.+++..-..... ....+..-......          ..+..+      ....+...
T Consensus       128 ~~i~~~~~~-~~G--ivvLt~~~~~~~v~n~~~~~-~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~------~~~~i~~~  197 (410)
T PF04841_consen  128 CRIFAIWFY-KNG--IVVLTGNNRFYVVNNIDEPV-KLRRLPEIPGLWTKFHWWPSWTVIPLLSSD------RVVEILLA  197 (410)
T ss_pred             ccccccccC-CCC--EEEECCCCeEEEEeCccccc-hhhccccCCCcccccccccccccceEeecC------cceEEEEe
Confidence            112222222 223  44444556665543222110 11111100000000          111111      23333334


Q ss_pred             CCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC
Q psy17342        290 YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN  369 (401)
Q Consensus       290 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  369 (401)
                      .++.+.+-+-...+.   +. ..+++..++.||+++ ++|.-..+|.+.+.+..-.+....+.  .........+.|.-+
T Consensus       198 ~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf~~~~~e~~--~~~~~~p~~~~WCG~  270 (410)
T PF04841_consen  198 NGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDFSEKLCEFD--TDSKSPPKQMAWCGN  270 (410)
T ss_pred             cCCEEEEEEcccccc---cc-CCCCeEEEEECCCCC-EEEEEECCCCEEEEECcccceeEEee--cCcCCCCcEEEEECC
Confidence            444555333222111   22 246899999999998 78888888999888755443322222  222334455666544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.11  E-value=0.15  Score=43.72  Aligned_cols=225  Identities=11%  Similarity=0.056  Sum_probs=119.8

Q ss_pred             EEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCC
Q psy17342        125 CFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSP  204 (401)
Q Consensus       125 ~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~  204 (401)
                      .|.++...++.+--..+.|.-|+..++....        ..+.+.+.++..  ...+..|+++..  .+.+++.+.....
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------~~~p~~~~~~~~--~d~~g~Lv~~~~--g~~~~~~~~~~~~   98 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV--------FPSPGGFSSGAL--IDAGGRLIACEH--GVRLLDPDTGGKI   98 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------EECCCCccccee--ecCCCeEEEEcc--ccEEEeccCCcee
Confidence            4667665677777778888889887654321        223333444444  334445555433  2445554321110


Q ss_pred             ccccccccccccCCccceEEEEeccCCCCeEEEEcC-----------CceEEEEeCCCCCCCceeeecCCCCceeeeecC
Q psy17342        205 QETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE-----------DGNVYSACRHGNKAGNVECYEGHEGPVVGLSSH  273 (401)
Q Consensus       205 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  273 (401)
                      ........   .......+.+... +++.+.+....           -|.++.++..+   .....+..+-..-+.|+|+
T Consensus        99 t~~~~~~~---~~~~~r~ND~~v~-pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g---~~~~l~~~~~~~~NGla~S  171 (307)
T COG3386          99 TLLAEPED---GLPLNRPNDGVVD-PDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG---GVVRLLDDDLTIPNGLAFS  171 (307)
T ss_pred             EEeccccC---CCCcCCCCceeEc-CCCCEEEeCCCccccCccccCCcceEEEEcCCC---CEEEeecCcEEecCceEEC
Confidence            11111110   1122344555666 55555443322           13455555422   2344444445556889999


Q ss_pred             ccCCCCCCCcEEEEE-eCCCeEEEEEeeC--C----Cc-eEEEeecCCceEEEEECCCCCcEEEEEecCC-EEEEEeCCC
Q psy17342        274 RAQGHIDFSHLYLTS-SYDWSVKLWNIKE--N----KP-VHSFNEFRDYVMDVQWSPINPALFATVEVAG-RVDLWNLNL  344 (401)
Q Consensus       274 ~~~~~~~~~~~l~s~-~~d~~i~iwd~~~--~----~~-~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~-~i~iwd~~~  344 (401)
                      |+      ++.|..+ +..+.|.-|++..  +    +. ...+....+..-.++...+|. +.+++..+| .|.+|+.. 
T Consensus       172 pD------g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pd-  243 (307)
T COG3386         172 PD------GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPD-  243 (307)
T ss_pred             CC------CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCC-
Confidence            99      5555544 4457888887752  1    11 112222346667788888886 454444443 99999998 


Q ss_pred             CCCCcceEEeecCCCCeEEEEec-CCCcEEE-EEecC
Q psy17342        345 DTEVPATSAIVEGAPALSRVTWT-PNGTQLC-VGDEK  379 (401)
Q Consensus       345 ~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~-~~~~d  379 (401)
                      ++++..+..+   ...+++++|- ++.+.|+ ++...
T Consensus       244 G~l~~~i~lP---~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         244 GKLLGEIKLP---VKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             CcEEEEEECC---CCCCccceEeCCCcCEEEEEecCC
Confidence            7766665532   2557778885 4445554 44333

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.06  E-value=0.12  Score=47.93  Aligned_cols=198  Identities=11%  Similarity=0.098  Sum_probs=104.2

Q ss_pred             eEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce--EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceee
Q psy17342        182 HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV--LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVEC  259 (401)
Q Consensus       182 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~  259 (401)
                      ..++.++.++.+.-.|..++. ..-....... .......+  ..+++.  ++..+++++.++.|+.+|.++.+  .+-.
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~-~~W~~~~~~~-~~~~~~~~~~~g~~~~--~~~~V~v~~~~g~v~AlD~~TG~--~~W~  135 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGK-VLWRYDPKLP-ADRGCCDVVNRGVAYW--DPRKVFFGTFDGRLVALDAETGK--QVWK  135 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCCh-hhceeCCCCC-ccccccccccCCcEEc--cCCeEEEecCCCeEEEEECCCCC--Eeee
Confidence            356667778888888876632 2221111110 00000000  011111  23678888999999999987443  3333


Q ss_pred             ecCCCC--ceeeeecCccCCCCCCCcEEEEEe---------CCCeEEEEEeeCCCceEEEeecCCc--------------
Q psy17342        260 YEGHEG--PVVGLSSHRAQGHIDFSHLYLTSS---------YDWSVKLWNIKENKPVHSFNEFRDY--------------  314 (401)
Q Consensus       260 ~~~~~~--~v~~i~~~~~~~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~--------------  314 (401)
                      +.....  .-..+.-.|.-.    +..++.++         .++.+..+|..+++.+..+......              
T Consensus       136 ~~~~~~~~~~~~i~ssP~v~----~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~  211 (488)
T cd00216         136 FGNNDQVPPGYTMTGAPTIV----KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMW  211 (488)
T ss_pred             ecCCCCcCcceEecCCCEEE----CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCccee
Confidence            322111  001122222210    23444443         3678999999999988877542110              


Q ss_pred             ------e-EEEEECCCCCcEEEEEecCC------------------EEEEEeCCCCCCCcceEEeecCC-------C-C-
Q psy17342        315 ------V-MDVQWSPINPALFATVEVAG------------------RVDLWNLNLDTEVPATSAIVEGA-------P-A-  360 (401)
Q Consensus       315 ------v-~~v~~~~~~~~~l~~~~~d~------------------~i~iwd~~~~~~~~~~~~~~~~~-------~-~-  360 (401)
                            + ...++.+.+. +++.++.++                  .|.-+|.++++........ .+.       . + 
T Consensus       212 ~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~-~~~~~~~~~~s~p~  289 (488)
T cd00216         212 GPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTT-PHDLWDYDGPNQPS  289 (488)
T ss_pred             cCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCC-CCCCcccccCCCCe
Confidence                  1 1234444444 455565454                  7999999998876554321 110       0 0 


Q ss_pred             eEEEEecCCCc---EEEEEecCCcEEEEEeccCcc
Q psy17342        361 LSRVTWTPNGT---QLCVGDEKGAITMFDVGEVGI  392 (401)
Q Consensus       361 v~~~~~s~~g~---~l~~~~~dg~v~iw~~~~~~~  392 (401)
                      +..+. .-+|.   .+++++.+|.++..|.+++++
T Consensus       290 ~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~  323 (488)
T cd00216         290 LADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKL  323 (488)
T ss_pred             EEecc-ccCCCeeEEEEEECCCceEEEEECCCCcE
Confidence            11110 12343   678888999999999999864

The alignment model contains an 8-bladed beta-propeller.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.04  E-value=0.28  Score=45.80  Aligned_cols=57  Identities=14%  Similarity=0.127  Sum_probs=35.1

Q ss_pred             CCcEEEEEeCcCCCCCceEEEecCCCee----------EEEEeCCCCceEEEEecCCeEEEEECCCCCCC
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFCQSPVL----------SCCFAKFNPYLILGGTYSGQIVLWDTRVQKKT  154 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~----------~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~  154 (401)
                      .++.|.-.|.++++.+=++.......+.          .+++.  + ..++.++.++.|.-.|..+++..
T Consensus        77 ~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~-~~v~v~t~dg~l~ALDa~TGk~~  143 (527)
T TIGR03075        77 SYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--D-GKVFFGTLDARLVALDAKTGKVV  143 (527)
T ss_pred             CCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--C-CEEEEEcCCCEEEEEECCCCCEE
Confidence            5778888898887765444332111111          12222  2 34566778999999999888764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.02  E-value=0.23  Score=44.30  Aligned_cols=86  Identities=13%  Similarity=0.108  Sum_probs=52.5

Q ss_pred             CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCC-CCeEEEEe---------cC----C-CcE-EEE
Q psy17342        312 RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGA-PALSRVTW---------TP----N-GTQ-LCV  375 (401)
Q Consensus       312 ~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~---------s~----~-g~~-l~~  375 (401)
                      ...+.+++.+|.+. +.|+...-|.|.++|+.++..+..++...... ..+....-         ++    . ..+ ++-
T Consensus       307 ~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  307 KREGESICLSPSGR-LAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             CceEEEEEECCCCC-EEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            34578899999986 77777677999999999877665543211100 00000000         00    0 122 344


Q ss_pred             EecCCcEEEEEeccCccceeeeeec
Q psy17342        376 GDEKGAITMFDVGEVGIACLKFITS  400 (401)
Q Consensus       376 ~~~dg~v~iw~~~~~~~~~l~~~~~  400 (401)
                      +-.-|.|-||.++.+  ..+..++.
T Consensus       386 aprRg~lEvW~~~~g--~Rv~a~~v  408 (415)
T PF14655_consen  386 APRRGILEVWSMRQG--PRVAAFNV  408 (415)
T ss_pred             eccCCeEEEEecCCC--CEEEEEEe
Confidence            667899999999998  45555543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.94  E-value=0.24  Score=43.31  Aligned_cols=251  Identities=18%  Similarity=0.186  Sum_probs=118.2

Q ss_pred             CeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC----ceEEEEEeCC-----
Q psy17342        120 PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN----AHNLISISND-----  190 (401)
Q Consensus       120 ~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~~~d-----  190 (401)
                      ..++|+|.|++ .++++ ...|.|++++.........................+++  +|+    +...++.+..     
T Consensus         3 ~P~~~a~~pdG-~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~--~p~f~~n~~lYv~~t~~~~~~~   78 (331)
T PF07995_consen    3 NPRSMAFLPDG-RLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAF--HPDFASNGYLYVYYTNADEDGG   78 (331)
T ss_dssp             SEEEEEEETTS-CEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE---TTCCCC-EEEEEEEEE-TSSS
T ss_pred             CceEEEEeCCC-cEEEE-eCCceEEEEeCCCcCcceecccccccccccCCccccee--ccccCCCCEEEEEEEcccCCCC
Confidence            46789999986 66665 56999999993332211221211112344557788998  563    4444444321     


Q ss_pred             ---CcEEEeeccCCCC----CccccccccccccCCccceEEEEeccCCCCeEEEEcCC-------------ceEEEEeCC
Q psy17342        191 ---GRLCSWSLEMLSS----PQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED-------------GNVYSACRH  250 (401)
Q Consensus       191 ---g~i~~wd~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------------~~i~~~~~~  250 (401)
                         ..|.-|.......    ....+.... ........-..|.|. +++.+.++.+..             |.|.-.+..
T Consensus        79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p-~~~~~~H~g~~l~fg-pDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d  156 (331)
T PF07995_consen   79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLP-DTSSGNHNGGGLAFG-PDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD  156 (331)
T ss_dssp             SEEEEEEEEEEETTSCEEEEEEEEEEEEE-S-CSSSS-EEEEEE--TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT
T ss_pred             CcceeeEEEeccCCccccccceEEEEEeC-CCCCCCCCCccccCC-CCCcEEEEeCCCCCcccccccccccceEEEeccc
Confidence               2344444432200    111111111 001233445668999 677665554332             334333433


Q ss_pred             CCCC----------Cceee-ecCCCCceeeeecCccCCCCCCCcEEEEE-eCCCeEEEEEeeCC----------------
Q psy17342        251 GNKA----------GNVEC-YEGHEGPVVGLSSHRAQGHIDFSHLYLTS-SYDWSVKLWNIKEN----------------  302 (401)
Q Consensus       251 ~~~~----------~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~----------------  302 (401)
                      +...          ..... -.++.. ...++|+|..     +.++++= +.|..=.|--+..+                
T Consensus       157 G~~p~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~t-----g~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~  230 (331)
T PF07995_consen  157 GSIPADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNT-----GRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSG  230 (331)
T ss_dssp             SSB-TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTT-----TEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTS
T ss_pred             CcCCCCCccccCCCceEEEEEeCCCc-cccEEEECCC-----CcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCC
Confidence            2100          00011 113333 3478888873     3444332 22322222223222                


Q ss_pred             -------------CceEEEeecCCceEEEEECCCCC------cEEEEEecCCEEEEEeCCCCCCCcceEEeecC-CCCeE
Q psy17342        303 -------------KPVHSFNEFRDYVMDVQWSPINP------ALFATVEVAGRVDLWNLNLDTEVPATSAIVEG-APALS  362 (401)
Q Consensus       303 -------------~~~~~~~~~~~~v~~v~~~~~~~------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~v~  362 (401)
                                   .++..+..| ..+..+.|.....      .+|++.-..+.|....+.....+......... ...+.
T Consensus       231 ~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~  309 (331)
T PF07995_consen  231 PPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPR  309 (331)
T ss_dssp             S-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EE
T ss_pred             CccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCce
Confidence                         133334333 4566777764321      25665555678888887655333222222222 33689


Q ss_pred             EEEecCCCcEEEEEecCCcEE
Q psy17342        363 RVTWTPNGTQLCVGDEKGAIT  383 (401)
Q Consensus       363 ~~~~s~~g~~l~~~~~dg~v~  383 (401)
                      .+++.|||.++++-+.+|.|+
T Consensus       310 ~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  310 DVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEEEETTSEEEEEE-TTTTEE
T ss_pred             EEEEcCCCeEEEEECCCCeEe
Confidence            999999999988888888775

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.94  E-value=0.0046  Score=35.78  Aligned_cols=31  Identities=29%  Similarity=0.407  Sum_probs=28.1

Q ss_pred             CCceEEEEECCCCCcEEEEEecCCEEEEEeCC
Q psy17342        312 RDYVMDVQWSPINPALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       312 ~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~  343 (401)
                      ...|..++|+|..+ ++|.++.+|.|.+|.+.
T Consensus        11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCC-EEEEEECCCeEEEEECC
Confidence            45689999999998 99999999999999993

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.85  E-value=0.0042  Score=35.93  Aligned_cols=31  Identities=19%  Similarity=0.587  Sum_probs=28.5

Q ss_pred             CCCeEEEEecCCCcEEEEEecCCcEEEEEec
Q psy17342        358 APALSRVTWTPNGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       358 ~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~  388 (401)
                      ...|..++|+|...+||.++.+|.|.+|.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4568999999999999999999999999993

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.84  E-value=0.31  Score=43.09  Aligned_cols=230  Identities=15%  Similarity=0.117  Sum_probs=96.4

Q ss_pred             CCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEec-------C---CCeeEEEEeCCCCceEEEEe--cC---
Q psy17342         76 QHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-------Q---SPVLSCCFAKFNPYLILGGT--YS---  140 (401)
Q Consensus        76 ~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-------~---~~v~~~~~~~~~~~~l~~g~--~d---  140 (401)
                      +.++|++.+.         .++.|.|.|+.+....+++.-.-       .   .....+..-|+| .+++++-  .+   
T Consensus        86 ~Rr~Li~PgL---------~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G-~imIS~lGd~~G~g  155 (461)
T PF05694_consen   86 ERRYLILPGL---------RSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG-RIMISALGDADGNG  155 (461)
T ss_dssp             -S-EEEEEBT---------TT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S
T ss_pred             cCCcEEeeee---------ccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCc-cEEEEeccCCCCCC
Confidence            5667887774         78999999998765555443210       0   122333444655 5666542  22   


Q ss_pred             -CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEe--------------------CCCcEEEeecc
Q psy17342        141 -GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS--------------------NDGRLCSWSLE  199 (401)
Q Consensus       141 -g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--------------------~dg~i~~wd~~  199 (401)
                       |-+.+.|-++.+........   .....--....|  .|..+.++|..                    .-.++.+||+.
T Consensus       156 ~Ggf~llD~~tf~v~g~We~~---~~~~~~gYDfw~--qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~  230 (461)
T PF05694_consen  156 PGGFVLLDGETFEVKGRWEKD---RGPQPFGYDFWY--QPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWS  230 (461)
T ss_dssp             --EEEEE-TTT--EEEE--SB----TT------EEE--ETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETT
T ss_pred             CCcEEEEcCccccccceeccC---CCCCCCCCCeEE--cCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECC
Confidence             44777776654432221110   111223345555  66767777653                    13469999998


Q ss_pred             CCCCCccccccccccccCCccceEEEEecc-CCCCe-EEEEcCCceEEEEeC-CCCCC--Cceeeec-------------
Q psy17342        200 MLSSPQETRDLQYNNKQTKNLAVLSLAFPQ-NDVNN-FVVGCEDGNVYSACR-HGNKA--GNVECYE-------------  261 (401)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~-l~~~~~d~~i~~~~~-~~~~~--~~~~~~~-------------  261 (401)
                      . .+..+.+.+..     ....+..+.|.. |+..+ ++.+...++|..|-. ....-  +.+..+.             
T Consensus       231 ~-r~~~Q~idLg~-----~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml  304 (461)
T PF05694_consen  231 T-RKLLQTIDLGE-----EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEML  304 (461)
T ss_dssp             T-TEEEEEEES-T-----TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGG
T ss_pred             C-CcEeeEEecCC-----CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccc
Confidence            6 34455554432     233455666651 22333 444455666766543 21111  0111111             


Q ss_pred             ----CCCCceeeeecCccCCCCCCCcEEE-EEeCCCeEEEEEeeCC-Cc--eEEEee----------------cCCceEE
Q psy17342        262 ----GHEGPVVGLSSHRAQGHIDFSHLYL-TSSYDWSVKLWNIKEN-KP--VHSFNE----------------FRDYVMD  317 (401)
Q Consensus       262 ----~~~~~v~~i~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~-~~--~~~~~~----------------~~~~v~~  317 (401)
                          .-..-|+.|..+.+.      ++|. ++-.+|.|+.||+... ++  +.++..                -.+...-
T Consensus       305 ~~~~~~P~LitDI~iSlDD------rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqM  378 (461)
T PF05694_consen  305 KPFGAVPPLITDILISLDD------RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQM  378 (461)
T ss_dssp             GGG-EE------EEE-TTS-------EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----
T ss_pred             cccccCCCceEeEEEccCC------CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCe
Confidence                113457888888884      5554 4445999999999763 22  222211                0123466


Q ss_pred             EEECCCCCcEEEEEe
Q psy17342        318 VQWSPINPALFATVE  332 (401)
Q Consensus       318 v~~~~~~~~~l~~~~  332 (401)
                      +..|.||+.+.+|.|
T Consensus       379 vqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  379 VQLSLDGKRLYVTNS  393 (461)
T ss_dssp             EEE-TTSSEEEEE--
T ss_pred             EEEccCCeEEEEEee
Confidence            888999987777665

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA03098 kelch-like protein; Provisional

Probab=96.80  E-value=0.069  Score=50.26  Aligned_cols=155  Identities=12%  Similarity=0.006  Sum_probs=75.7

Q ss_pred             CCCeEEEEcCCc-----eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC------CeEEEEEe
Q psy17342        231 DVNNFVVGCEDG-----NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD------WSVKLWNI  299 (401)
Q Consensus       231 ~~~~l~~~~~d~-----~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~  299 (401)
                      ++..++.|+.++     .+..||....+-.....+....... +++.. .      +.+++.||.+      ..+..||.
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~~-~------~~iYv~GG~~~~~~~~~~v~~yd~  413 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVNV-N------NLIYVIGGISKNDELLKTVECFSL  413 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEEE-C------CEEEEECCcCCCCcccceEEEEeC
Confidence            466777777652     3667777654322222221111111 11111 1      5677777732      35788887


Q ss_pred             eCCCce--EEEeecCCceEEEEECCCCCcEEEEEecC--------CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC
Q psy17342        300 KENKPV--HSFNEFRDYVMDVQWSPINPALFATVEVA--------GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN  369 (401)
Q Consensus       300 ~~~~~~--~~~~~~~~~v~~v~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  369 (401)
                      .+.+-.  ..+....... +++ ..++. +++.||.+        ..+.+||..+.+-........+ ......+.+  +
T Consensus       414 ~t~~W~~~~~~p~~r~~~-~~~-~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~~--~  487 (534)
T PHA03098        414 NTNKWSKGSPLPISHYGG-CAI-YHDGK-IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCIF--N  487 (534)
T ss_pred             CCCeeeecCCCCccccCc-eEE-EECCE-EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEEE--C
Confidence            654311  1111111111 122 22343 66777643        2388889877543221111011 111112222  6


Q ss_pred             CcEEEEEecC-----CcEEEEEeccCccceeeeee
Q psy17342        370 GTQLCVGDEK-----GAITMFDVGEVGIACLKFIT  399 (401)
Q Consensus       370 g~~l~~~~~d-----g~v~iw~~~~~~~~~l~~~~  399 (401)
                      ++.++.|+.+     ..|.+||+.+.....+..++
T Consensus       488 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  522 (534)
T PHA03098        488 NKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFP  522 (534)
T ss_pred             CEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCc
Confidence            7777777754     47899999988766555443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.78  E-value=0.091  Score=47.70  Aligned_cols=154  Identities=10%  Similarity=0.036  Sum_probs=90.4

Q ss_pred             CCCcEEEEEEeecCCceEEEEEe---CCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCC---CCeEEEEc
Q psy17342        166 HTHPVFCMSVIGTQNAHNLISIS---NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQND---VNNFVVGC  239 (401)
Q Consensus       166 ~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~  239 (401)
                      .-.++..++|   .||+.++-..   .+|.+++=|-.               ..+.-..|..++|.|..   ...+++..
T Consensus        18 AiHPvhGlaW---TDGkqVvLT~L~l~~gE~kfGds~---------------viGqFEhV~GlsW~P~~~~~~paLLAVQ   79 (671)
T PF15390_consen   18 AIHPVHGLAW---TDGKQVVLTDLQLHNGEPKFGDSK---------------VIGQFEHVHGLSWAPPCTADTPALLAVQ   79 (671)
T ss_pred             hhccccceEe---cCCCEEEEEeeeeeCCccccCCcc---------------EeeccceeeeeeecCcccCCCCceEEEe
Confidence            3458899999   3555444322   12333322211               12234468999999652   22455556


Q ss_pred             CCceEEEEeCCCCC---CCceeeecCC---CCc--eeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC--CceEEEe
Q psy17342        240 EDGNVYSACRHGNK---AGNVECYEGH---EGP--VVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN--KPVHSFN  309 (401)
Q Consensus       240 ~d~~i~~~~~~~~~---~~~~~~~~~~---~~~--v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~  309 (401)
                      ....|.+|.+....   .+.+.....+   .-+  -..+.|+|.      ...|+.-.....-.+++++..  +....++
T Consensus        80 HkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk------~~iL~VLT~~dvSV~~sV~~d~srVkaDi~  153 (671)
T PF15390_consen   80 HKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK------KAILTVLTARDVSVLPSVHCDSSRVKADIK  153 (671)
T ss_pred             ccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC------CceEEEEecCceeEeeeeeeCCceEEEecc
Confidence            66789999875322   1222221111   111  245789998      567766665555556676543  2223344


Q ss_pred             ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        310 EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       310 ~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      . .+.|.|.+|.+||+.++++.+..=.-+|||-..
T Consensus       154 ~-~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  154 T-SGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             C-CceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            4 678999999999998877777766778998653

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.75  E-value=0.34  Score=42.40  Aligned_cols=205  Identities=14%  Similarity=0.113  Sum_probs=104.3

Q ss_pred             CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeC----CCCc--eEEEEecC---CeEEEEECCCCCC--Cceeeccccc
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAK----FNPY--LILGGTYS---GQIVLWDTRVQKK--TPVHRTPLSV  163 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~--~l~~g~~d---g~v~iw~~~~~~~--~~~~~~~~~~  163 (401)
                      .++-+.+||++ ++.+..+.   .+.++.+..-.    .+..  ++++...+   ..|++|.+.....  ..+......+
T Consensus        76 K~~GL~VYdL~-Gk~lq~~~---~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~  151 (381)
T PF02333_consen   76 KKGGLYVYDLD-GKELQSLP---VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPI  151 (381)
T ss_dssp             TTTEEEEEETT-S-EEEEE----SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-E
T ss_pred             CCCCEEEEcCC-CcEEEeec---CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCccc
Confidence            78899999999 55554332   34444443321    1322  33443332   4699998864321  1111000001


Q ss_pred             cCCCCcEEEEEEeecC-Cc-eEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC
Q psy17342        164 MAHTHPVFCMSVIGTQ-NA-HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED  241 (401)
Q Consensus       164 ~~~~~~v~~~~~~~~~-~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  241 (401)
                      ......+..+|...++ ++ -+.+....+|.+..|.+..........++..  ...-...+..+... .....|+.+-++
T Consensus       152 ~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR--~f~~~sQ~EGCVVD-De~g~LYvgEE~  228 (381)
T PF02333_consen  152 ATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVR--EFKVGSQPEGCVVD-DETGRLYVGEED  228 (381)
T ss_dssp             E-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEE--EEE-SS-EEEEEEE-TTTTEEEEEETT
T ss_pred             ccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEE--EecCCCcceEEEEe-cccCCEEEecCc
Confidence            1222457888875444 34 3666778899999998864222211111111  11123367778888 677889999999


Q ss_pred             ceEEEEeCCCCCCC---ceeeecC--CCCceeeeecCccCCCCCCCcEEEEEe-CCCeEEEEEeeC-CCceEEEe
Q psy17342        242 GNVYSACRHGNKAG---NVECYEG--HEGPVVGLSSHRAQGHIDFSHLYLTSS-YDWSVKLWNIKE-NKPVHSFN  309 (401)
Q Consensus       242 ~~i~~~~~~~~~~~---~~~~~~~--~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~-~~~~~~~~  309 (401)
                      .-|+-|+.+.....   .+....+  ....|-.|++-....   ...+|+.++ .+++..||+.+. ...+..|.
T Consensus       229 ~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~---g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~  300 (381)
T PF02333_consen  229 VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSD---GKGYLIVSSQGDNSFAVYDREGPNAYVGSFR  300 (381)
T ss_dssp             TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CC---C-EEEEEEEGGGTEEEEEESSTT--EEEEEE
T ss_pred             cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCC---CCeEEEEEcCCCCeEEEEecCCCCcccceEE
Confidence            99999988743322   2222222  345677777654210   024555544 478899999864 34444443

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.59  E-value=0.15  Score=48.05  Aligned_cols=151  Identities=12%  Similarity=0.068  Sum_probs=83.7

Q ss_pred             cceEEEEeccCCCCeEEEEc------CCc--eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC
Q psy17342        220 LAVLSLAFPQNDVNNFVVGC------EDG--NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD  291 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~------~d~--~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d  291 (401)
                      ..+.+.+++ ++++.++...      .|.  .|++.+.....   .....+.  ..+.-.|+|+      +..+++....
T Consensus       350 ~~vsspaiS-pdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~---~~lt~g~--~~t~PsWspD------G~~lw~v~dg  417 (591)
T PRK13616        350 GNITSAALS-RSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA---VQVLEGH--SLTRPSWSLD------ADAVWVVVDG  417 (591)
T ss_pred             cCcccceEC-CCCCEEEEEEeecCCCCCcceEEEEEeCCCcc---eeeecCC--CCCCceECCC------CCceEEEecC
Confidence            367788899 7888776554      233  45665643221   1122232  3678889998      5666555422


Q ss_pred             ------------CeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEE---EeCCCCCC-Ccc-eEEe
Q psy17342        292 ------------WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDL---WNLNLDTE-VPA-TSAI  354 (401)
Q Consensus       292 ------------~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~i---wd~~~~~~-~~~-~~~~  354 (401)
                                  +.+.+.++..+....   ...+.|..+.|||||..+++..  ++.|.+   -....+.. +.. ....
T Consensus       418 ~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~  492 (591)
T PRK13616        418 NTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVG  492 (591)
T ss_pred             cceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEee
Confidence                        233333444333322   2255799999999998554444  577877   34333321 100 1111


Q ss_pred             ecCCCCeEEEEecCCCcEEEEEecCCcEEEEEec
Q psy17342        355 VEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       355 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~  388 (401)
                      ..-...+.++.|..++.++ ++..++...+|.+.
T Consensus       493 ~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        493 PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             cccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence            1122346789999999855 55555555556554

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.58  E-value=0.24  Score=46.70  Aligned_cols=184  Identities=12%  Similarity=0.072  Sum_probs=93.7

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC-----
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS-----  140 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d-----  140 (401)
                      ..+.+.+++|+|+.++.......  ........|.+++.. +.. ..+..  ....+.-.|+|++. .+++....     
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~--~~~d~~s~Lwv~~~g-g~~-~~lt~--g~~~t~PsWspDG~-~lw~v~dg~~~~~  422 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGR--GAPDPASSLWVGPLG-GVA-VQVLE--GHSLTRPSWSLDAD-AVWVVVDGNTVVR  422 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecC--CCCCcceEEEEEeCC-Ccc-eeeec--CCCCCCceECCCCC-ceEEEecCcceEE
Confidence            46788999999998877762111  000123456666653 222 22222  23488899999874 33333211     


Q ss_pred             -------CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCc-ccccccc
Q psy17342        141 -------GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQ-ETRDLQY  212 (401)
Q Consensus       141 -------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~  212 (401)
                             +.+.+.+++.+...         ....+.|..+.|  +++|..++... +|.|.+=-+....... .......
T Consensus       423 v~~~~~~gql~~~~vd~ge~~---------~~~~g~Issl~w--SpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~  490 (591)
T PRK13616        423 VIRDPATGQLARTPVDASAVA---------SRVPGPISELQL--SRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPRE  490 (591)
T ss_pred             EeccCCCceEEEEeccCchhh---------hccCCCcCeEEE--CCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEE
Confidence                   22333333332211         133567999999  99999888876 4677663332211111 1111100


Q ss_pred             ccccCCccceEEEEeccCCCCeEEEEcCCce--EEEEeCCCCCCCceeeecC--CCCceeeeecCc
Q psy17342        213 NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGN--VYSACRHGNKAGNVECYEG--HEGPVVGLSSHR  274 (401)
Q Consensus       213 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~~~~~~~~~~~~~~~~~~--~~~~v~~i~~~~  274 (401)
                       ........+.++.|. .++.+ +++..++.  ++..++.+....   .+..  ...++..|+-.+
T Consensus       491 -l~~~l~~~~~~l~W~-~~~~L-~V~~~~~~~~v~~v~vDG~~~~---~~~~~n~~~~v~~vaa~~  550 (591)
T PRK13616        491 -VGPGLGDTAVSLDWR-TGDSL-VVGRSDPEHPVWYVNLDGSNSD---ALPSRNLSAPVVAVAASP  550 (591)
T ss_pred             -eecccCCccccceEe-cCCEE-EEEecCCCCceEEEecCCcccc---ccCCCCccCceEEEecCC
Confidence             001122335788998 66664 45555444  444445433221   1122  245666676665

>PRK10115 protease 2; Provisional

Probab=96.55  E-value=0.84  Score=44.31  Aligned_cols=250  Identities=12%  Similarity=0.015  Sum_probs=124.8

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC-----
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS-----  140 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d-----  140 (401)
                      -.+..+.|+|+|++|+.+.     -..++....|++.|+.++..++..... . . ..++|.+++..++++...+     
T Consensus       127 ~~l~~~~~Spdg~~la~~~-----d~~G~E~~~l~v~d~~tg~~l~~~i~~-~-~-~~~~w~~D~~~~~y~~~~~~~~~~  198 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAE-----DFLSRRQYGIRFRNLETGNWYPELLDN-V-E-PSFVWANDSWTFYYVRKHPVTLLP  198 (686)
T ss_pred             EEEeEEEECCCCCEEEEEe-----cCCCcEEEEEEEEECCCCCCCCccccC-c-c-eEEEEeeCCCEEEEEEecCCCCCC
Confidence            3477789999999888776     223345567999999877644433221 1 1 5699999886666665432     


Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC---CCcEEEeeccCCCCCccccccccccccC
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN---DGRLCSWSLEMLSSPQETRDLQYNNKQT  217 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~  217 (401)
                      ..|..+++.+......    +-+........-..+ .+.++.+++..+.   ++.+.+++....... ....+..     
T Consensus       199 ~~v~~h~lgt~~~~d~----lv~~e~~~~~~~~~~-~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-----  267 (686)
T PRK10115        199 YQVWRHTIGTPASQDE----LVYEEKDDTFYVSLH-KTTSKHYVVIHLASATTSEVLLLDAELADAE-PFVFLPR-----  267 (686)
T ss_pred             CEEEEEECCCChhHCe----EEEeeCCCCEEEEEE-EcCCCCEEEEEEECCccccEEEEECcCCCCC-ceEEEEC-----
Confidence            3577788877632111    111222222331222 1446665554433   346888885431111 1111111     


Q ss_pred             CccceEEEEeccCCCCeEEEEcC----CceEEEEeCCCCCCCceeeecCC-C-CceeeeecCccCCCCCCCcEEEEEeCC
Q psy17342        218 KNLAVLSLAFPQNDVNNFVVGCE----DGNVYSACRHGNKAGNVECYEGH-E-GPVVGLSSHRAQGHIDFSHLYLTSSYD  291 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~~~~~----d~~i~~~~~~~~~~~~~~~~~~~-~-~~v~~i~~~~~~~~~~~~~~l~s~~~d  291 (401)
                      .......+. + .. ..+..-+.    ...|...++.. .. ....+..+ . ..|..+.+..       ..++++...+
T Consensus       268 ~~~~~~~~~-~-~~-~~ly~~tn~~~~~~~l~~~~~~~-~~-~~~~l~~~~~~~~i~~~~~~~-------~~l~~~~~~~  335 (686)
T PRK10115        268 RKDHEYSLD-H-YQ-HRFYLRSNRHGKNFGLYRTRVRD-EQ-QWEELIPPRENIMLEGFTLFT-------DWLVVEERQR  335 (686)
T ss_pred             CCCCEEEEE-e-CC-CEEEEEEcCCCCCceEEEecCCC-cc-cCeEEECCCCCCEEEEEEEEC-------CEEEEEEEeC
Confidence            111122222 2 22 33333332    22344444432 11 12333334 2 3677777763       4677777777


Q ss_pred             CeEEEEEeeC-CCceEEEe-ecCCceEEEEEC--CCCCcEEEEEec---CCEEEEEeCCCCC
Q psy17342        292 WSVKLWNIKE-NKPVHSFN-EFRDYVMDVQWS--PINPALFATVEV---AGRVDLWNLNLDT  346 (401)
Q Consensus       292 ~~i~iwd~~~-~~~~~~~~-~~~~~v~~v~~~--~~~~~~l~~~~~---d~~i~iwd~~~~~  346 (401)
                      +.-+++-+.. +..+..+. .....+..+.++  +++..++++.+.   -+.+..+|+.+++
T Consensus       336 g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        336 GLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             CEEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            7766655542 33344443 222233334444  444435544432   3678888887653

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.54  E-value=0.35  Score=39.87  Aligned_cols=183  Identities=13%  Similarity=0.012  Sum_probs=99.6

Q ss_pred             CeeEEEEeCCCCceEEEEecCC--eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342        120 PVLSCCFAKFNPYLILGGTYSG--QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS  197 (401)
Q Consensus       120 ~v~~~~~~~~~~~~l~~g~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd  197 (401)
                      -...+.|..++ .++-+.+.-|  .|+.+|+.+++.......+-.+     --..++.  . ++....-.=.++...+||
T Consensus        46 FTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~-----FgEGit~--~-~d~l~qLTWk~~~~f~yd  116 (264)
T PF05096_consen   46 FTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY-----FGEGITI--L-GDKLYQLTWKEGTGFVYD  116 (264)
T ss_dssp             EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-------EEEEEE--E-TTEEEEEESSSSEEEEEE
T ss_pred             cCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc-----cceeEEE--E-CCEEEEEEecCCeEEEEc
Confidence            34567775545 5655555555  6899999988754332221111     1123333  1 233333344678888999


Q ss_pred             ccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC--CCC---ceeeeec
Q psy17342        198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG--HEG---PVVGLSS  272 (401)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~--~~~---~v~~i~~  272 (401)
                      ..+... ...+..        ...-+.++   .++..|+.......++.+|....+  ....+..  ...   .++-+.+
T Consensus       117 ~~tl~~-~~~~~y--------~~EGWGLt---~dg~~Li~SDGS~~L~~~dP~~f~--~~~~i~V~~~g~pv~~LNELE~  182 (264)
T PF05096_consen  117 PNTLKK-IGTFPY--------PGEGWGLT---SDGKRLIMSDGSSRLYFLDPETFK--EVRTIQVTDNGRPVSNLNELEY  182 (264)
T ss_dssp             TTTTEE-EEEEE---------SSS--EEE---ECSSCEEEE-SSSEEEEE-TTT-S--EEEEEE-EETTEE---EEEEEE
T ss_pred             cccceE-EEEEec--------CCcceEEE---cCCCEEEEECCccceEEECCcccc--eEEEEEEEECCEECCCcEeEEE
Confidence            875322 222221        22445565   457788888888899999976432  2333321  222   2344555


Q ss_pred             CccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee---------------cCCceEEEEECCCCCcEEEEEe
Q psy17342        273 HRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE---------------FRDYVMDVQWSPINPALFATVE  332 (401)
Q Consensus       273 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------------~~~~v~~v~~~~~~~~~l~~~~  332 (401)
                      ..       +.+.|-.-....|..-|..+|+.+..+..               ...-.+.|++.|..+.++++|-
T Consensus       183 i~-------G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  183 IN-------GKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             ET-------TEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             Ec-------CEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            42       45555555566677778777776665531               1345889999999887888773

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2079|consensus

Probab=96.52  E-value=0.012  Score=56.57  Aligned_cols=98  Identities=23%  Similarity=0.323  Sum_probs=73.1

Q ss_pred             CCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee
Q psy17342        231 DVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE  310 (401)
Q Consensus       231 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  310 (401)
                      ....++.|+..|.+...|.+++-. +...-..-.++|++++|+.+      +.+++.|-.+|.|.+||+..+++++.+..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~-~~~~ne~v~~~Vtsvafn~d------g~~l~~G~~~G~V~v~D~~~~k~l~~i~e  170 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLG-PLHQNERVQGPVTSVAFNQD------GSLLLAGLGDGHVTVWDMHRAKILKVITE  170 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccc-hhhcCCccCCcceeeEecCC------CceeccccCCCcEEEEEccCCcceeeeee
Confidence            356789999999999988875422 22222334689999999998      79999999999999999999999998887


Q ss_pred             cCCceEEE---EECCCCCcEEEEEecCCE
Q psy17342        311 FRDYVMDV---QWSPINPALFATVEVAGR  336 (401)
Q Consensus       311 ~~~~v~~v---~~~~~~~~~l~~~~~d~~  336 (401)
                      |..+.+++   .+..++. .+.++...|.
T Consensus       171 ~~ap~t~vi~v~~t~~nS-~llt~D~~Gs  198 (1206)
T KOG2079|consen  171 HGAPVTGVIFVGRTSQNS-KLLTSDTGGS  198 (1206)
T ss_pred             cCCccceEEEEEEeCCCc-EEEEccCCCc
Confidence            66655444   4444554 6777766665

>KOG2444|consensus

Probab=96.50  E-value=0.01  Score=46.84  Aligned_cols=106  Identities=17%  Similarity=0.150  Sum_probs=63.5

Q ss_pred             CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCce
Q psy17342         77 HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPV  156 (401)
Q Consensus        77 ~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~  156 (401)
                      +..+++|+          .+|.|.+|++.-..............|.++--.-+...+.+++..+|.|+.|++.-.+....
T Consensus        70 ~~~~~vG~----------~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~  139 (238)
T KOG2444|consen   70 SAKLMVGT----------SDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGY  139 (238)
T ss_pred             CceEEeec----------ccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeee
Confidence            34566666          79999999987322221111111334444333332334889999999999999987665422


Q ss_pred             eeccccccCCC-CcEEEEEEeecCCceEEEEE--eCCCcEEEeeccC
Q psy17342        157 HRTPLSVMAHT-HPVFCMSVIGTQNAHNLISI--SNDGRLCSWSLEM  200 (401)
Q Consensus       157 ~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~--~~dg~i~~wd~~~  200 (401)
                            ...|+ .++..+..  ...+..++.+  |.|..++.|++..
T Consensus       140 ------~g~h~~~~~e~~iv--v~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  140 ------VGQHNFESGEELIV--VGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ------eccccCCCcceeEE--ecCCceEEeeccccchhhhhcchhh
Confidence                  23455 45544444  4555666666  7777777777753

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.47  E-value=0.61  Score=41.76  Aligned_cols=287  Identities=12%  Similarity=0.132  Sum_probs=141.1

Q ss_pred             hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecC----CCCCeEE
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWST----QHPELLL   82 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~   82 (401)
                      .+.|+.|+..|.+||++...+..-   +.+.-              +..       .-+.+|..++.-+    .....++
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~---~~~ll--------------lE~-------~l~~PILqv~~G~F~s~~~~~~La   92 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQ---PEDLL--------------LET-------QLKDPILQVECGKFVSGSEDLQLA   92 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCC---CccEE--------------EEE-------ecCCcEEEEEeccccCCCCcceEE
Confidence            468999999999999887333200   00111              111       1125566666432    2333444


Q ss_pred             EEeccCCCCCCCCCcEEEEEeCcCCCC--------CceEEEec--CCCeeEEEEeCCC----CceEEEEecCCeEEEEEC
Q psy17342         83 ASYHRNKEAPNEPDGVCLIWNTKFKKT--------TPEFEFFC--QSPVLSCCFAKFN----PYLILGGTYSGQIVLWDT  148 (401)
Q Consensus        83 ~~~~~~~~~~~~~d~~v~iwd~~~~~~--------~~~~~~~~--~~~v~~~~~~~~~----~~~l~~g~~dg~v~iw~~  148 (401)
                      .-          .-..+.||.+.....        .-...+.|  ......++.-|.|    ..+++.-+.||.+.+++-
T Consensus        93 VL----------hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feq  162 (418)
T PF14727_consen   93 VL----------HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQ  162 (418)
T ss_pred             Ee----------cCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeC
Confidence            44          378899998843111        11222233  3445555555433    368888899999999997


Q ss_pred             CCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcc----------------cccccc
Q psy17342        149 RVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQE----------------TRDLQY  212 (401)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~----------------~~~~~~  212 (401)
                      +.......    +...-..+|   +.|  .+..+.|++++.+..+..|..........                ......
T Consensus       163 e~~~f~~~----lp~~llPgP---l~Y--~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dW  233 (418)
T PF14727_consen  163 ESFAFSRF----LPDFLLPGP---LCY--CPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDW  233 (418)
T ss_pred             CcEEEEEE----cCCCCCCcC---eEE--eecCCEEEEecCceeEEEecHHHhhhcccccccccccccccccccccccee
Confidence            76432111    111233444   455  56777899999988888887643211100                000000


Q ss_pred             c-cccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeee-cCc-cCCCCCCCcEEEEEe
Q psy17342        213 N-NKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLS-SHR-AQGHIDFSHLYLTSS  289 (401)
Q Consensus       213 ~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~-~~~-~~~~~~~~~~l~s~~  289 (401)
                      . +.....-.+..+.++ .....+++-+ ...+++.+..+ ..+..+.+.   ....++. +.. ....+.....++.++
T Consensus       234 s~nlGE~~l~i~v~~~~-~~~~~IvvLg-er~Lf~l~~~G-~l~~~krLd---~~p~~~~~Y~~~~~~~~~~~~~llV~t  307 (418)
T PF14727_consen  234 SFNLGEQALDIQVVRFS-SSESDIVVLG-ERSLFCLKDNG-SLRFQKRLD---YNPSCFCPYRVPWYNEPSTRLNLLVGT  307 (418)
T ss_pred             EEECCceeEEEEEEEcC-CCCceEEEEe-cceEEEEcCCC-eEEEEEecC---CceeeEEEEEeecccCCCCceEEEEEe
Confidence            0 000111122233333 1222222222 23555555432 211222222   2112221 111 011111123578888


Q ss_pred             CCCeEEEEEeeCCCceEEEeecCCceEEEEEC--CCCCcEEEEEecCCEEEEEeCCCC
Q psy17342        290 YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWS--PINPALFATVEVAGRVDLWNLNLD  345 (401)
Q Consensus       290 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~--~~~~~~l~~~~~d~~i~iwd~~~~  345 (401)
                      .++++.||.=  .+.+..-+....+| ++...  ++-+.++++-+.+|.+.+--+-+.
T Consensus       308 ~t~~LlVy~d--~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd  362 (418)
T PF14727_consen  308 HTGTLLVYED--TTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTD  362 (418)
T ss_pred             cCCeEEEEeC--CeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence            8999999853  33333333322222 33322  222348999999999999877654

>KOG2395|consensus

Probab=96.32  E-value=0.073  Score=47.50  Aligned_cols=144  Identities=13%  Similarity=0.111  Sum_probs=89.6

Q ss_pred             EEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCC--CCCCCcEEEEEeCCCeEEEEEeeCC-C-ceEEEee
Q psy17342        235 FVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQG--HIDFSHLYLTSSYDWSVKLWNIKEN-K-PVHSFNE  310 (401)
Q Consensus       235 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~-~-~~~~~~~  310 (401)
                      +..+.....++-.|+.  .++.+..+.-+.. |+-+.+.|+.-  ..+ ...-+.|-.|..|.-||.+-. + .+..-+.
T Consensus       349 l~~~~~~~~l~klDIE--~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~-~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~  424 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIE--RGKIVEEWKFEDD-INMVDITPDFKFAQLT-SEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS  424 (644)
T ss_pred             eeCCCCcCcceeeecc--cceeeeEeeccCC-cceeeccCCcchhccc-ccccEEeecCCceEEecccccCcceeeeeec
Confidence            3445555667777776  5556777776655 66677777531  111 122234556889999998742 2 1111122


Q ss_pred             c----CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEE
Q psy17342        311 F----RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFD  386 (401)
Q Consensus       311 ~----~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~  386 (401)
                      |    .....|.+-..+|  +++.||.+|.|++||- .+....+.  ..+-..+|..+..+.+|++|++.+ +..+.+-+
T Consensus       425 kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTA--lPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~  498 (644)
T KOG2395|consen  425 KQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTA--LPGLGDAIKHVDVTADGKWILATC-KTYLLLID  498 (644)
T ss_pred             cccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhc--ccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence            2    2234566666666  6899999999999997 33332221  123467899999999999987555 45666666


Q ss_pred             ec
Q psy17342        387 VG  388 (401)
Q Consensus       387 ~~  388 (401)
                      +.
T Consensus       499 t~  500 (644)
T KOG2395|consen  499 TL  500 (644)
T ss_pred             Ee
Confidence            54

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.32  E-value=0.75  Score=41.20  Aligned_cols=158  Identities=13%  Similarity=0.136  Sum_probs=86.1

Q ss_pred             CCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEee---cCCceEEEEEeCCCcEEEeeccCCCCC
Q psy17342        128 KFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG---TQNAHNLISISNDGRLCSWSLEMLSSP  204 (401)
Q Consensus       128 ~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~l~s~~~dg~i~~wd~~~~~~~  204 (401)
                      +++...++.|+.+|.++||+.......+. . .+--..-..+|..+....   ..+...|+. =.-..+.+|.+......
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~-lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~  110 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQPE-D-LLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGT  110 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCCCc-c-EEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCC
Confidence            44557899999999999999965543321 0 011134467888887631   122223333 44567788877432111


Q ss_pred             ---ccccccccccccCCc--cceEEEEecc---CC-CCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCcc
Q psy17342        205 ---QETRDLQYNNKQTKN--LAVLSLAFPQ---ND-VNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRA  275 (401)
Q Consensus       205 ---~~~~~~~~~~~~~~~--~~v~~~~~~~---~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  275 (401)
                         .....+..  ...|.  .....+++-|   .. ...+.+-+.||.+.+|+-+...  ....+.. .--...+.+.|.
T Consensus       111 ~~~g~~~~L~~--~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~--f~~~lp~-~llPgPl~Y~~~  185 (418)
T PF14727_consen  111 VEHGNQYQLEL--IYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA--FSRFLPD-FLLPGPLCYCPR  185 (418)
T ss_pred             cccCcEEEEEE--EEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE--EEEEcCC-CCCCcCeEEeec
Confidence               00111111  00111  1122222221   22 4678889999999999876321  1122222 222234567776


Q ss_pred             CCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        276 QGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       276 ~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                            .+.|++++.+..+.-|..
T Consensus       186 ------tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  186 ------TDSFVTASSSWTLECYKY  203 (418)
T ss_pred             ------CCEEEEecCceeEEEecH
Confidence                  578888888888888865

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.31  E-value=0.5  Score=39.04  Aligned_cols=239  Identities=12%  Similarity=0.177  Sum_probs=126.2

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCe-EEEEECCCCCCCceeec--cccccCCCCcEEEEEEeecCCceEEEEEeCC----
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQ-IVLWDTRVQKKTPVHRT--PLSVMAHTHPVFCMSVIGTQNAHNLISISND----  190 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~-v~iw~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----  190 (401)
                      ......++|+|..+.-++.+-.-|+ ..++|.+..+.......  ...+.+|.      .|  +++|.+|...-.|    
T Consensus        67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vf--s~dG~~LYATEndfd~~  138 (366)
T COG3490          67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VF--SPDGRLLYATENDFDPN  138 (366)
T ss_pred             ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------cc--CCCCcEEEeecCCCCCC
Confidence            3455678888877776766656565 56788877665322111  11223443      34  8999988876543    


Q ss_pred             -CcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEE--------eCCCCCCCc-----
Q psy17342        191 -GRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSA--------CRHGNKAGN-----  256 (401)
Q Consensus       191 -g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~--------~~~~~~~~~-----  256 (401)
                       |.|-+||.+.  ..+..-+..     .|.-....+.+. +|+..++++.  |-|...        ++...+...     
T Consensus       139 rGViGvYd~r~--~fqrvgE~~-----t~GiGpHev~lm-~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~  208 (366)
T COG3490         139 RGVIGVYDARE--GFQRVGEFS-----THGIGPHEVTLM-ADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDA  208 (366)
T ss_pred             CceEEEEeccc--ccceecccc-----cCCcCcceeEEe-cCCcEEEEeC--CceecccccCccccchhhcCccEEEEec
Confidence             6799999874  233333333     255566677888 8999888764  333332        111111111     


Q ss_pred             -----e--eeec--CCCCceeeeecCccCCCCCCCcEEEEEeCCC-----eEEEEEeeCCCceEEEee-------cCCce
Q psy17342        257 -----V--ECYE--GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW-----SVKLWNIKENKPVHSFNE-------FRDYV  315 (401)
Q Consensus       257 -----~--~~~~--~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~-------~~~~v  315 (401)
                           +  .++.  -+...|.-++..++      +..++.+-..|     --.+=-...++++.-+..       ....|
T Consensus       209 atG~liekh~Lp~~l~~lSiRHld~g~d------gtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYi  282 (366)
T COG3490         209 ATGNLIEKHTLPASLRQLSIRHLDIGRD------GTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYI  282 (366)
T ss_pred             cccchhhhccCchhhhhcceeeeeeCCC------CcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhh
Confidence                 1  1111  12334555555554      33333222211     011111123444443332       23467


Q ss_pred             EEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342        316 MDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV  387 (401)
Q Consensus       316 ~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~  387 (401)
                      -+|+.+.+...+.+++-..+..-+||..++..+.....  ..   ...++  +...-+++.+.+|.+.++.-
T Consensus       283 gsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l--~d---aaGva--~~~~gf~vssg~G~~~~~s~  347 (366)
T COG3490         283 GSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL--PD---AAGVA--AAKGGFAVSSGQGRIIFYSR  347 (366)
T ss_pred             hheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc--cc---cccce--eccCceEEecCCceEEeccc
Confidence            78888876664555555667888999999876543321  11   11222  23334556666787877643

>KOG4499|consensus

Probab=96.28  E-value=0.44  Score=38.12  Aligned_cols=92  Identities=11%  Similarity=0.139  Sum_probs=61.3

Q ss_pred             eeeeecCccCCCCCCCcEEEEEeCCCeEEEEE--eeCC-----CceEEEee----cCCceEEEEECCCCCcEEEEEecCC
Q psy17342        267 VVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN--IKEN-----KPVHSFNE----FRDYVMDVQWSPINPALFATVEVAG  335 (401)
Q Consensus       267 v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd--~~~~-----~~~~~~~~----~~~~v~~v~~~~~~~~~l~~~~~d~  335 (401)
                      -+.++|+.+.     ..+.++-+.+-+|.-||  ..+|     +.+..++.    .....-.++...+|. +++++-..+
T Consensus       160 sNgl~Wd~d~-----K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~  233 (310)
T KOG4499|consen  160 SNGLAWDSDA-----KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGG  233 (310)
T ss_pred             CccccccccC-----cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCc
Confidence            3567887654     55666777788888888  3443     23333332    111223455566776 777777789


Q ss_pred             EEEEEeCCCCCCCcceEEeecCCCCeEEEEec
Q psy17342        336 RVDLWNLNLDTEVPATSAIVEGAPALSRVTWT  367 (401)
Q Consensus       336 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s  367 (401)
                      +|...|..+++.+..+..+   ...|++++|-
T Consensus       234 ~V~~~dp~tGK~L~eiklP---t~qitsccFg  262 (310)
T KOG4499|consen  234 TVQKVDPTTGKILLEIKLP---TPQITSCCFG  262 (310)
T ss_pred             EEEEECCCCCcEEEEEEcC---CCceEEEEec
Confidence            9999999999988777653   5679999996

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.28  E-value=0.45  Score=45.21  Aligned_cols=104  Identities=13%  Similarity=0.162  Sum_probs=70.7

Q ss_pred             CcEEEEEeCCCeEEEEEeeC-------C-------------CceEEEeecCCceEEEEEC--CCCCcEEEEEecCCEEEE
Q psy17342        282 SHLYLTSSYDWSVKLWNIKE-------N-------------KPVHSFNEFRDYVMDVQWS--PINPALFATVEVAGRVDL  339 (401)
Q Consensus       282 ~~~l~s~~~d~~i~iwd~~~-------~-------------~~~~~~~~~~~~v~~v~~~--~~~~~~l~~~~~d~~i~i  339 (401)
                      .+.|+.|..||.|.+|.+++       .             +|...+.. ...+++++++  ...+ ++|+++....|.|
T Consensus       114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~r-lIAVSsNs~~VTV  191 (717)
T PF08728_consen  114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSR-LIAVSSNSQEVTV  191 (717)
T ss_pred             eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcce-EEEEecCCceEEE
Confidence            47889999999999997632       1             12233333 4578999998  6664 8888888888888


Q ss_pred             EeCCCCCCCcceEEeecCCCCeEEEEecCCC-----c-EEEEEecCCcEEEEEe
Q psy17342        340 WNLNLDTEVPATSAIVEGAPALSRVTWTPNG-----T-QLCVGDEKGAITMFDV  387 (401)
Q Consensus       340 wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-----~-~l~~~~~dg~v~iw~~  387 (401)
                      |-+..............+...|.+++|-++.     . .|++++-.|.+.+|++
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8665421111111112356678899997653     2 7888899999999998

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.19  E-value=0.58  Score=38.66  Aligned_cols=143  Identities=10%  Similarity=0.043  Sum_probs=85.0

Q ss_pred             eEEEEeccCCCCeEEEEcCCce-EEEEeCCCCCCCce------eeecCCCCceeeeecCccCCCCCCCcEEEEEeC----
Q psy17342        222 VLSLAFPQNDVNNFVVGCEDGN-VYSACRHGNKAGNV------ECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY----  290 (401)
Q Consensus       222 v~~~~~~~~~~~~l~~~~~d~~-i~~~~~~~~~~~~~------~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~----  290 (401)
                      ...++++|....-++.+-.-|+ ..++|.........      +.|.+|      =.|+|+      +.+|...-.    
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~d------G~~LYATEndfd~  137 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPD------GRLLYATENDFDP  137 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCCC------CcEEEeecCCCCC
Confidence            3456677655666666666565 46677765443221      122233      257888      677776543    


Q ss_pred             -CCeEEEEEeeCC-CceEEEeecCCceEEEEECCCCCcEEEEEec------------------CCEEEEEeCCCCCCCcc
Q psy17342        291 -DWSVKLWNIKEN-KPVHSFNEFRDYVMDVQWSPINPALFATVEV------------------AGRVDLWNLNLDTEVPA  350 (401)
Q Consensus       291 -d~~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~------------------d~~i~iwd~~~~~~~~~  350 (401)
                       -|.|-|||.+.+ +.+.++..|.-....+.|.+||+ .++.+..                  .-.+.+.|..++..+..
T Consensus       138 ~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGr-tlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liek  216 (366)
T COG3490         138 NRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGR-TLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEK  216 (366)
T ss_pred             CCceEEEEecccccceecccccCCcCcceeEEecCCc-EEEEeCCceecccccCccccchhhcCccEEEEeccccchhhh
Confidence             368999999753 55677888887888999999998 4444421                  01233344344443333


Q ss_pred             eEEe-ecCCCCeEEEEecCCCcEEEEEe
Q psy17342        351 TSAI-VEGAPALSRVTWTPNGTQLCVGD  377 (401)
Q Consensus       351 ~~~~-~~~~~~v~~~~~s~~g~~l~~~~  377 (401)
                      ...+ ..+.-.|..++..+||..++.+-
T Consensus       217 h~Lp~~l~~lSiRHld~g~dgtvwfgcQ  244 (366)
T COG3490         217 HTLPASLRQLSIRHLDIGRDGTVWFGCQ  244 (366)
T ss_pred             ccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence            2221 01234678888888888766543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.18  E-value=0.6  Score=38.81  Aligned_cols=191  Identities=12%  Similarity=0.008  Sum_probs=109.6

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS  197 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd  197 (401)
                      ...+.++.|+|+...++++. ....-.|+=-..++...  +.|+.  + -+.-..+.|  ..++.+.++--.++.+.++.
T Consensus        85 ~~nvS~LTynp~~rtLFav~-n~p~~iVElt~~Gdlir--tiPL~--g-~~DpE~Iey--ig~n~fvi~dER~~~l~~~~  156 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVT-NKPAAIVELTKEGDLIR--TIPLT--G-FSDPETIEY--IGGNQFVIVDERDRALYLFT  156 (316)
T ss_pred             cccccceeeCCCcceEEEec-CCCceEEEEecCCceEE--Eeccc--c-cCChhHeEE--ecCCEEEEEehhcceEEEEE
Confidence            45599999999885555555 45555555444444332  22222  2 122335666  56777777777788888887


Q ss_pred             ccCCCCCcc----ccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCc-eeeecCC-------CC
Q psy17342        198 LEMLSSPQE----TRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGN-VECYEGH-------EG  265 (401)
Q Consensus       198 ~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~-------~~  265 (401)
                      +........    .+.+..  ..........++|. +....|.++-+..-+.+|......... ......+       -.
T Consensus       157 vd~~t~~~~~~~~~i~L~~--~~k~N~GfEGlA~d-~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~  233 (316)
T COG3204         157 VDADTTVISAKVQKIPLGT--TNKKNKGFEGLAWD-PVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL  233 (316)
T ss_pred             EcCCccEEeccceEEeccc--cCCCCcCceeeecC-CCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEee
Confidence            764322111    122221  22236677899999 677777777777777776554322111 1111111       13


Q ss_pred             ceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCC---------ceEEEEECCCCC
Q psy17342        266 PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRD---------YVMDVQWSPINP  325 (401)
Q Consensus       266 ~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---------~v~~v~~~~~~~  325 (401)
                      .|.++.|++..     +.+++-+.+++.+.-.|.. |.++..+.-+.+         ..-.|+..++|.
T Consensus       234 DvSgl~~~~~~-----~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~  296 (316)
T COG3204         234 DVSGLEFNAIT-----NSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN  296 (316)
T ss_pred             ccccceecCCC-----CcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence            46778888775     6778888778888877764 555555443221         234567777764

>KOG3630|consensus

Probab=96.10  E-value=0.083  Score=51.62  Aligned_cols=146  Identities=17%  Similarity=0.140  Sum_probs=88.5

Q ss_pred             cceEEEEeccCCCCeEE--EEcCCceEEEEeCCCCCCCc---eeeecCC------CCceeeeecCccCCCCCCCcEEEEE
Q psy17342        220 LAVLSLAFPQNDVNNFV--VGCEDGNVYSACRHGNKAGN---VECYEGH------EGPVVGLSSHRAQGHIDFSHLYLTS  288 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~--~~~~d~~i~~~~~~~~~~~~---~~~~~~~------~~~v~~i~~~~~~~~~~~~~~l~s~  288 (401)
                      ..+..+... +|....+  ..+++-.|+.||++.-....   ...+..|      .....++.|+|.-     ....+.+
T Consensus       101 ~pi~~~v~~-~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v-----p~n~av~  174 (1405)
T KOG3630|consen  101 IPIVIFVCF-HDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV-----PLNSAVD  174 (1405)
T ss_pred             ccceEEEec-cCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc-----cchhhhh
Confidence            345555555 4544433  33444468899987432211   1111112      2345678888874     4566777


Q ss_pred             eCCCeEEEEEeeCCCce-EEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC--CCCcceEEeecCCCCeEEEE
Q psy17342        289 SYDWSVKLWNIKENKPV-HSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD--TEVPATSAIVEGAPALSRVT  365 (401)
Q Consensus       289 ~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~  365 (401)
                      ..|+.|++..+...... ..+.. ....++++|+|.|+ .++.|-..|++.-|...-.  ..++...  ......|.++.
T Consensus       175 l~dlsl~V~~~~~~~~~v~s~p~-t~~~Tav~WSprGK-Ql~iG~nnGt~vQy~P~leik~~ip~Pp--~~e~yrvl~v~  250 (1405)
T KOG3630|consen  175 LSDLSLRVKSTKQLAQNVTSFPV-TNSQTAVLWSPRGK-QLFIGRNNGTEVQYEPSLEIKSEIPEPP--VEENYRVLSVT  250 (1405)
T ss_pred             ccccchhhhhhhhhhhhhcccCc-ccceeeEEeccccc-eeeEecCCCeEEEeecccceeecccCCC--cCCCcceeEEE
Confidence            78999999887643332 23333 56789999999998 6788989999988865432  1111111  11246789999


Q ss_pred             ecCCCcEEEE
Q psy17342        366 WTPNGTQLCV  375 (401)
Q Consensus       366 ~s~~g~~l~~  375 (401)
                      |-....+|++
T Consensus       251 Wl~t~eflvv  260 (1405)
T KOG3630|consen  251 WLSTQEFLVV  260 (1405)
T ss_pred             EecceeEEEE
Confidence            9877777664

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.04  E-value=0.92  Score=39.66  Aligned_cols=253  Identities=14%  Similarity=0.137  Sum_probs=114.7

Q ss_pred             eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-E-----ecCCCeeEEEEeCC---CCceEEEEe
Q psy17342         68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-F-----FCQSPVLSCCFAKF---NPYLILGGT  138 (401)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~-----~~~~~v~~~~~~~~---~~~~l~~g~  138 (401)
                      .+.|+|.|+|+ ++++.          ..|.|++++.. +....... .     ........++++|+   +..+.++.+
T Consensus         4 P~~~a~~pdG~-l~v~e----------~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t   71 (331)
T PF07995_consen    4 PRSMAFLPDGR-LLVAE----------RSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT   71 (331)
T ss_dssp             EEEEEEETTSC-EEEEE----------TTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred             ceEEEEeCCCc-EEEEe----------CCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence            67899999985 45566          69999999933 33211111 1     13457899999994   223333333


Q ss_pred             cC--------CeEEEEECCCCCCC-----ceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCc-------------
Q psy17342        139 YS--------GQIVLWDTRVQKKT-----PVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR-------------  192 (401)
Q Consensus       139 ~d--------g~v~iw~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-------------  192 (401)
                      ..        ..|.-|........     .+................|.|  .|++.+.++.+..+.             
T Consensus        72 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~f--gpDG~LYvs~G~~~~~~~~~~~~~~~G~  149 (331)
T PF07995_consen   72 NADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAF--GPDGKLYVSVGDGGNDDNAQDPNSLRGK  149 (331)
T ss_dssp             EE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE---TTSEEEEEEB-TTTGGGGCSTTSSTTE
T ss_pred             cccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccC--CCCCcEEEEeCCCCCcccccccccccce
Confidence            21        23444444433110     011100010123345566888  899987777665433             


Q ss_pred             EEEeeccCCCCCcccccc------ccccccCCccceEEEEeccCCCCeEEEE-cCCc--eEEEEe--------CCCC---
Q psy17342        193 LCSWSLEMLSSPQETRDL------QYNNKQTKNLAVLSLAFPQNDVNNFVVG-CEDG--NVYSAC--------RHGN---  252 (401)
Q Consensus       193 i~~wd~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~--~i~~~~--------~~~~---  252 (401)
                      |.-.+..  +.....-..      .......--.....++|+|..+.++++= +.+.  .|.+..        ....   
T Consensus       150 ilri~~d--G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~  227 (331)
T PF07995_consen  150 ILRIDPD--GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPK  227 (331)
T ss_dssp             EEEEETT--SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCS
T ss_pred             EEEeccc--CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCC
Confidence            2222221  110000000      0000000112345788984335554432 1221  233211        0000   


Q ss_pred             --------------CCCceeeecCCCCceeeeecCccCCCCCC-CcEEEEEeCCCeEEEEEeeCCCceEEEe----ecCC
Q psy17342        253 --------------KAGNVECYEGHEGPVVGLSSHRAQGHIDF-SHLYLTSSYDWSVKLWNIKENKPVHSFN----EFRD  313 (401)
Q Consensus       253 --------------~~~~~~~~~~~~~~v~~i~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~  313 (401)
                                    ...+...+..| ..+..+.|.+...-+.+ +.+|++.-..+.|....+..+..+....    ....
T Consensus       228 ~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  306 (331)
T PF07995_consen  228 YSGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGG  306 (331)
T ss_dssp             TTSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS
T ss_pred             CCCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCC
Confidence                          00123334433 44556665543211111 4566666656788888887553332221    2344


Q ss_pred             ceEEEEECCCCCcEEEEEecCCEEE
Q psy17342        314 YVMDVQWSPINPALFATVEVAGRVD  338 (401)
Q Consensus       314 ~v~~v~~~~~~~~~l~~~~~d~~i~  338 (401)
                      .+..+++.|+|. ++++...+|.|.
T Consensus       307 r~~~v~~~pDG~-Lyv~~d~~G~iy  330 (331)
T PF07995_consen  307 RPRDVAQGPDGA-LYVSDDSDGKIY  330 (331)
T ss_dssp             -EEEEEEETTSE-EEEEE-TTTTEE
T ss_pred             CceEEEEcCCCe-EEEEECCCCeEe
Confidence            789999999996 666666677663

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.90  E-value=1.2  Score=42.54  Aligned_cols=167  Identities=13%  Similarity=0.065  Sum_probs=92.3

Q ss_pred             ceEEEEecCCeEEEEECCCCCCCce----eec---c---------ccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEE
Q psy17342        132 YLILGGTYSGQIVLWDTRVQKKTPV----HRT---P---------LSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCS  195 (401)
Q Consensus       132 ~~l~~g~~dg~v~iw~~~~~~~~~~----~~~---~---------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~  195 (401)
                      ++++.+ ..+.|.||+++.....+.    .+.   +         .........|+.|....--+...|+.|..||.|.+
T Consensus        50 n~LFiA-~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~  128 (717)
T PF08728_consen   50 NLLFIA-YQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA  128 (717)
T ss_pred             CEEEEE-ECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence            455555 367899998865433221    000   0         00011223455555433445678999999999999


Q ss_pred             eeccCCC----CC-------ccccccccccccCCccceEEEEec-cCCCCeEEEEcCCceEEEEeCCCCCCCc-eeeecC
Q psy17342        196 WSLEMLS----SP-------QETRDLQYNNKQTKNLAVLSLAFP-QNDVNNFVVGCEDGNVYSACRHGNKAGN-VECYEG  262 (401)
Q Consensus       196 wd~~~~~----~~-------~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~  262 (401)
                      |.++...    ..       .................++.++++ ....++||+++....|.+|-......+. ...-..
T Consensus       129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~  208 (717)
T PF08728_consen  129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQ  208 (717)
T ss_pred             EEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccc
Confidence            9763210    00       000011110011134477888876 1245678888888888777544311111 111113


Q ss_pred             CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        263 HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       263 ~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      |...|.+|+|.++...+.....+++++-.|.+.+|++
T Consensus       209 ~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  209 HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            6677899999987533221137888888999999988

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.90  E-value=1.5  Score=41.03  Aligned_cols=59  Identities=15%  Similarity=0.055  Sum_probs=38.7

Q ss_pred             CeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceE
Q psy17342        292 WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATS  352 (401)
Q Consensus       292 ~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  352 (401)
                      +.+.-+|+.+++.+.+.+.......+. ..-.+. +++.++.+|.++.+|.++++.+...+
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~-lvf~g~~~G~l~a~D~~TGe~lw~~~  499 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGD-LVFYGTLEGYFKAFDAKTGEELWKFK  499 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcc-eEECCc-EEEEECCCCeEEEEECCCCCEeEEEe
Confidence            467788888888777665322111121 111333 66678889999999999999776654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.85  E-value=0.42  Score=44.92  Aligned_cols=103  Identities=14%  Similarity=0.247  Sum_probs=64.6

Q ss_pred             CcEEEEEeCCCeEEEEEeeCCCceEEEe-ecCCceEEEEEC--CCCCcEEEEEecCCEEEEEeCC-----CC----CCCc
Q psy17342        282 SHLYLTSSYDWSVKLWNIKENKPVHSFN-EFRDYVMDVQWS--PINPALFATVEVAGRVDLWNLN-----LD----TEVP  349 (401)
Q Consensus       282 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~--~~~~~~l~~~~~d~~i~iwd~~-----~~----~~~~  349 (401)
                      +...+.-+...++.|||.+.+....+-. ...+.|.++.|.  |+++. +.+.|....|.+|--.     ..    ..+.
T Consensus        41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qs-iLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~  119 (631)
T PF12234_consen   41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQS-ILAVGFPHHVLLYTQLRYDYTNKGPSWAPIR  119 (631)
T ss_pred             CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCE-EEEEEcCcEEEEEEccchhhhcCCcccceeE
Confidence            3454554556689999998876444322 246789999885  67774 5556678889988532     11    1122


Q ss_pred             ceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342        350 ATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV  387 (401)
Q Consensus       350 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~  387 (401)
                      .+........+|.+..|-++|.+++.++  +.+.|++-
T Consensus       120 ~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  120 KIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             EEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            2222222346799999999998665443  35777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.82  E-value=0.93  Score=37.86  Aligned_cols=149  Identities=16%  Similarity=0.167  Sum_probs=86.1

Q ss_pred             ceEEEEeccCCCCeEEEEc---CCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEE
Q psy17342        221 AVLSLAFPQNDVNNFVVGC---EDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLW  297 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~---~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iw  297 (401)
                      .+.+.+++ ++++.++...   ....++++......   ...+.+  ..+..-.|.++      +...+....+...+++
T Consensus        25 ~~~s~AvS-~dg~~~A~v~~~~~~~~L~~~~~~~~~---~~~~~g--~~l~~PS~d~~------g~~W~v~~~~~~~~~~   92 (253)
T PF10647_consen   25 DVTSPAVS-PDGSRVAAVSEGDGGRSLYVGPAGGPV---RPVLTG--GSLTRPSWDPD------GWVWTVDDGSGGVRVV   92 (253)
T ss_pred             cccceEEC-CCCCeEEEEEEcCCCCEEEEEcCCCcc---eeeccC--CccccccccCC------CCEEEEEcCCCceEEE
Confidence            67888999 7787766555   34446666543221   112222  36777888887      4565555556666666


Q ss_pred             E-eeCCCceE-EEeec--CCceEEEEECCCCCcEEEEE--ecCCEEEEEeCCCCCCC-c-----ceEEeecCCCCeEEEE
Q psy17342        298 N-IKENKPVH-SFNEF--RDYVMDVQWSPINPALFATV--EVAGRVDLWNLNLDTEV-P-----ATSAIVEGAPALSRVT  365 (401)
Q Consensus       298 d-~~~~~~~~-~~~~~--~~~v~~v~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~-~-----~~~~~~~~~~~v~~~~  365 (401)
                      . ...++... .....  ...|.++.+||||..+.+..  ..++.|.+=-+.....- +     ...........++.++
T Consensus        93 ~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~  172 (253)
T PF10647_consen   93 RDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVA  172 (253)
T ss_pred             EecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeee
Confidence            3 23332221 12211  12799999999998655444  23567777655432211 1     1111112246789999


Q ss_pred             ecCCCcEEEEEecCCc
Q psy17342        366 WTPNGTQLCVGDEKGA  381 (401)
Q Consensus       366 ~s~~g~~l~~~~~dg~  381 (401)
                      |.+++.+++.+...+.
T Consensus       173 W~~~~~L~V~~~~~~~  188 (253)
T PF10647_consen  173 WSDDSTLVVLGRSAGG  188 (253)
T ss_pred             ecCCCEEEEEeCCCCC
Confidence            9999988877665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.65  E-value=0.42  Score=44.92  Aligned_cols=104  Identities=11%  Similarity=0.134  Sum_probs=67.5

Q ss_pred             CCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEee-----C----C
Q psy17342        232 VNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIK-----E----N  302 (401)
Q Consensus       232 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-----~----~  302 (401)
                      ++..++-+....+.+||.+....+....+ ...+.|.++.|.....    ++.+++.+....|.+|--.     .    .
T Consensus        41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d----~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w  115 (631)
T PF12234_consen   41 KKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPD----GQSILAVGFPHHVLLYTQLRYDYTNKGPSW  115 (631)
T ss_pred             CcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCC----CCEEEEEEcCcEEEEEEccchhhhcCCccc
Confidence            44444555556799999986543333344 3578899999986532    6777778889999998531     1    1


Q ss_pred             CceEEEe--ecC-CceEEEEECCCCCcEEEEEecCCEEEEEeCC
Q psy17342        303 KPVHSFN--EFR-DYVMDVQWSPINPALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       303 ~~~~~~~--~~~-~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~  343 (401)
                      .++.++.  .|+ .+|.+..|.++|.  ++.|+ ++.+.|+|-.
T Consensus       116 ~~i~~i~i~~~T~h~Igds~Wl~~G~--LvV~s-GNqlfv~dk~  156 (631)
T PF12234_consen  116 APIRKIDISSHTPHPIGDSIWLKDGT--LVVGS-GNQLFVFDKW  156 (631)
T ss_pred             ceeEEEEeecCCCCCccceeEecCCe--EEEEe-CCEEEEECCC
Confidence            2344332  233 5789999999995  44443 5588888754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.51  E-value=0.63  Score=33.79  Aligned_cols=113  Identities=12%  Similarity=0.128  Sum_probs=72.3

Q ss_pred             EEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCC------CCceEEEecCCCeeEEEEeCC----CCceEEEEe
Q psy17342         69 TYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK------TTPEFEFFCQSPVLSCCFAKF----NPYLILGGT  138 (401)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~----~~~~l~~g~  138 (401)
                      ..-.|....+.|++++          ..++|.|++.....      ......+.-...|++++-.+-    +...|+.|+
T Consensus         2 aiGkfDG~~pcL~~aT----------~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt   71 (136)
T PF14781_consen    2 AIGKFDGVHPCLACAT----------TGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT   71 (136)
T ss_pred             eEEEeCCCceeEEEEe----------cCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec
Confidence            3446777778899888          68999999986432      122234455678888876653    346888886


Q ss_pred             cCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEee-cCCceEEEEEeCCCcEEEeecc
Q psy17342        139 YSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG-TQNAHNLISISNDGRLCSWSLE  199 (401)
Q Consensus       139 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~dg~i~~wd~~  199 (401)
                       ...+..||+......       ..+.-.+.|+++.+-. .....-++..+.+..|.-||.+
T Consensus        72 -~t~llaYDV~~N~d~-------Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~  125 (136)
T PF14781_consen   72 -QTSLLAYDVENNSDL-------FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE  125 (136)
T ss_pred             -cceEEEEEcccCchh-------hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence             567999999887643       2345556777777632 1112345555555566666654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.50  E-value=1.2  Score=36.89  Aligned_cols=191  Identities=9%  Similarity=0.005  Sum_probs=101.9

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      .-...+.|..+|..+-+.+.        -....|+.+|+++++......+...----.++...  ..+..-.-.++...+
T Consensus        45 aFTQGL~~~~~g~LyESTG~--------yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~  114 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGL--------YGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFV  114 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECS--------TTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEE
T ss_pred             ccCccEEecCCCEEEEeCCC--------CCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEE
Confidence            33556788777766555551        13568999999998877666655433334455553  245555568999999


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEE
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL  225 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (401)
                      ||..+-+.....       ...+.-+.++.    ++..|+.......+.++|..+... ...+.+..  ....-..+.-+
T Consensus       115 yd~~tl~~~~~~-------~y~~EGWGLt~----dg~~Li~SDGS~~L~~~dP~~f~~-~~~i~V~~--~g~pv~~LNEL  180 (264)
T PF05096_consen  115 YDPNTLKKIGTF-------PYPGEGWGLTS----DGKRLIMSDGSSRLYFLDPETFKE-VRTIQVTD--NGRPVSNLNEL  180 (264)
T ss_dssp             EETTTTEEEEEE-------E-SSS--EEEE----CSSCEEEE-SSSEEEEE-TTT-SE-EEEEE-EE--TTEE---EEEE
T ss_pred             EccccceEEEEE-------ecCCcceEEEc----CCCEEEEECCccceEEECCcccce-EEEEEEEE--CCEECCCcEeE
Confidence            999876543221       22346677775    677788777778899999875332 22222222  01112234445


Q ss_pred             EeccCCCCeEEEEcCCceEEEEeCCCCCCCceeee---------------cCCCCceeeeecCccCCCCCCCcEEEEEe
Q psy17342        226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY---------------EGHEGPVVGLSSHRAQGHIDFSHLYLTSS  289 (401)
Q Consensus       226 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~---------------~~~~~~v~~i~~~~~~~~~~~~~~l~s~~  289 (401)
                      .|.  ++...|-.-....|...|..+..  ....+               .....-.+.|++.|..     +.+++||=
T Consensus       181 E~i--~G~IyANVW~td~I~~Idp~tG~--V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~-----~~l~vTGK  250 (264)
T PF05096_consen  181 EYI--NGKIYANVWQTDRIVRIDPETGK--VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPET-----DRLFVTGK  250 (264)
T ss_dssp             EEE--TTEEEEEETTSSEEEEEETTT-B--EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTT-----TEEEEEET
T ss_pred             EEE--cCEEEEEeCCCCeEEEEeCCCCe--EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCC-----CEEEEEeC
Confidence            554  34444444444444444544221  11111               0113557899999885     56777763

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PHA03098 kelch-like protein; Provisional

Probab=95.50  E-value=1.1  Score=42.26  Aligned_cols=187  Identities=14%  Similarity=0.053  Sum_probs=84.0

Q ss_pred             ceEEEEecCC------eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC-----cEEEeeccC
Q psy17342        132 YLILGGTYSG------QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG-----RLCSWSLEM  200 (401)
Q Consensus       132 ~~l~~g~~dg------~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~~wd~~~  200 (401)
                      .+++.|+.++      .+..||..+..-......    .........+.+    ++..++.|+.++     .+..||..+
T Consensus       296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~----~~~R~~~~~~~~----~~~lyv~GG~~~~~~~~~v~~yd~~~  367 (534)
T PHA03098        296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL----IYPRKNPGVTVF----NNRIYVIGGIYNSISLNTVESWKPGE  367 (534)
T ss_pred             EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCC----CcccccceEEEE----CCEEEEEeCCCCCEecceEEEEcCCC
Confidence            5666665442      467788776554222111    111112222222    567777777653     366677654


Q ss_pred             CCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC------ceEEEEeCCCCCCCceeeecCCCCceeeeecCc
Q psy17342        201 LSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED------GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR  274 (401)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  274 (401)
                      .. -.....++.     .... .+++.  -++..++.|+.+      ..+..||....+-..+..+....... ++... 
T Consensus       368 ~~-W~~~~~lp~-----~r~~-~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~~-  436 (534)
T PHA03098        368 SK-WREEPPLIF-----PRYN-PCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIYH-  436 (534)
T ss_pred             Cc-eeeCCCcCc-----CCcc-ceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEEE-
Confidence            21 111111111     1111 11222  246667777632      35778887654332222221111111 11111 


Q ss_pred             cCCCCCCCcEEEEEeCC--------CeEEEEEeeCCCceE--EEeecCCceEEEEECCCCCcEEEEEecC-----CEEEE
Q psy17342        275 AQGHIDFSHLYLTSSYD--------WSVKLWNIKENKPVH--SFNEFRDYVMDVQWSPINPALFATVEVA-----GRVDL  339 (401)
Q Consensus       275 ~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~--~~~~~~~~v~~v~~~~~~~~~l~~~~~d-----~~i~i  339 (401)
                      .      +.+++.|+.+        ..+.+||..+.+-..  .+.........+.+  ++. +++.|+.+     +.+.+
T Consensus       437 ~------~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~  507 (534)
T PHA03098        437 D------GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNK-IYVVGGDKYEYYINEIEV  507 (534)
T ss_pred             C------CEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCE-EEEEcCCcCCcccceeEE
Confidence            1      4667777643        237888887643211  11111111122222  444 66777654     46778


Q ss_pred             EeCCCCC
Q psy17342        340 WNLNLDT  346 (401)
Q Consensus       340 wd~~~~~  346 (401)
                      ||..+.+
T Consensus       508 yd~~~~~  514 (534)
T PHA03098        508 YDDKTNT  514 (534)
T ss_pred             EeCCCCE
Confidence            8877653

>KOG3630|consensus

Probab=95.47  E-value=0.15  Score=50.02  Aligned_cols=150  Identities=10%  Similarity=0.038  Sum_probs=94.7

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCc---e-------EEEecCCCeeEEEEeCCCCceEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTP---E-------FEFFCQSPVLSCCFAKFNPYLIL  135 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~---~-------~~~~~~~~v~~~~~~~~~~~~l~  135 (401)
                      -+|..+...+|+...++...        +.+-.|..||+++-....   .       ..+....-..++.|+|.-+...+
T Consensus       101 ~pi~~~v~~~D~t~s~v~~t--------sng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~a  172 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVST--------SNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSA  172 (1405)
T ss_pred             ccceEEEeccCCceEEEEEe--------cCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhh
Confidence            45677777788776666552        134588999987521111   1       11122345678999997666677


Q ss_pred             EEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccc
Q psy17342        136 GGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNK  215 (401)
Q Consensus       136 ~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  215 (401)
                      ....|+.|++..+......      ..........++++|  ++.|..++.|-..|++.-|.... . ....+....  .
T Consensus       173 v~l~dlsl~V~~~~~~~~~------v~s~p~t~~~Tav~W--SprGKQl~iG~nnGt~vQy~P~l-e-ik~~ip~Pp--~  240 (1405)
T KOG3630|consen  173 VDLSDLSLRVKSTKQLAQN------VTSFPVTNSQTAVLW--SPRGKQLFIGRNNGTEVQYEPSL-E-IKSEIPEPP--V  240 (1405)
T ss_pred             hhccccchhhhhhhhhhhh------hcccCcccceeeEEe--ccccceeeEecCCCeEEEeeccc-c-eeecccCCC--c
Confidence            7788999998877643321      111234567899999  99999999999999999887642 1 111111111  1


Q ss_pred             cCCccceEEEEeccCCCCeEEE
Q psy17342        216 QTKNLAVLSLAFPQNDVNNFVV  237 (401)
Q Consensus       216 ~~~~~~v~~~~~~~~~~~~l~~  237 (401)
                      . ....|.+++|. ....++++
T Consensus       241 ~-e~yrvl~v~Wl-~t~eflvv  260 (1405)
T KOG3630|consen  241 E-ENYRVLSVTWL-STQEFLVV  260 (1405)
T ss_pred             C-CCcceeEEEEe-cceeEEEE
Confidence            1 24689999998 55555443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.28  E-value=2.4  Score=39.06  Aligned_cols=73  Identities=12%  Similarity=0.223  Sum_probs=48.3

Q ss_pred             EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECC
Q psy17342         70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTR  149 (401)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~  149 (401)
                      .+-|+|....|++-.          ....-.++++..............+-|.|.+|.+||.+++++-+..=.-++||-.
T Consensus       117 GCVWHPk~~iL~VLT----------~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  117 GCVWHPKKAILTVLT----------ARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             cccccCCCceEEEEe----------cCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            356888887776666          3334456676654444444456678999999999997766655444456788765


Q ss_pred             CCC
Q psy17342        150 VQK  152 (401)
Q Consensus       150 ~~~  152 (401)
                      ...
T Consensus       187 qKt  189 (671)
T PF15390_consen  187 QKT  189 (671)
T ss_pred             hhh
Confidence            543

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.23  E-value=0.79  Score=33.28  Aligned_cols=114  Identities=11%  Similarity=0.138  Sum_probs=70.2

Q ss_pred             EeccCCCCeEEEEcCCceEEEEeCCCCCC------CceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        226 AFPQNDVNNFVVGCEDGNVYSACRHGNKA------GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       226 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      .|. .....|++++.-|+|.+++......      ..+..+. -...|++++--|-..... ...|+.|+ ...+..||+
T Consensus         5 kfD-G~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~-~D~LliGt-~t~llaYDV   80 (136)
T PF14781_consen    5 KFD-GVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDG-RDCLLIGT-QTSLLAYDV   80 (136)
T ss_pred             EeC-CCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCC-cCEEEEec-cceEEEEEc
Confidence            455 4556888999999999998764321      1223333 445677776555321111 46777777 678999999


Q ss_pred             eCCCceEEEeecCCceEEEEECC----CCCcEEEEEecCCEEEEEeCCCCC
Q psy17342        300 KENKPVHSFNEFRDYVMDVQWSP----INPALFATVEVAGRVDLWNLNLDT  346 (401)
Q Consensus       300 ~~~~~~~~~~~~~~~v~~v~~~~----~~~~~l~~~~~d~~i~iwd~~~~~  346 (401)
                      ....-+..-.. ...|+++.+-.    ..+ +++.|+ +..|.-||....+
T Consensus        81 ~~N~d~Fyke~-~DGvn~i~~g~~~~~~~~-l~ivGG-ncsi~Gfd~~G~e  128 (136)
T PF14781_consen   81 ENNSDLFYKEV-PDGVNAIVIGKLGDIPSP-LVIVGG-NCSIQGFDYEGNE  128 (136)
T ss_pred             ccCchhhhhhC-ccceeEEEEEecCCCCCc-EEEECc-eEEEEEeCCCCcE
Confidence            88776654444 45677776632    223 555554 5677777766433

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.22  E-value=0.094  Score=29.38  Aligned_cols=32  Identities=25%  Similarity=0.307  Sum_probs=26.7

Q ss_pred             CCeeEEEEeCCCC--ceEEEEecCCeEEEEECCC
Q psy17342        119 SPVLSCCFAKFNP--YLILGGTYSGQIVLWDTRV  150 (401)
Q Consensus       119 ~~v~~~~~~~~~~--~~l~~g~~dg~v~iw~~~~  150 (401)
                      +.|.+++|+|...  .+|+-.-..|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998654  6888887889999999985

It contains a characteristic DLL sequence motif.

>PHA02790 Kelch-like protein; Provisional

Probab=95.12  E-value=1.1  Score=41.65  Aligned_cols=146  Identities=10%  Similarity=-0.030  Sum_probs=69.8

Q ss_pred             CCCeEEEEcCCc--eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC---eEEEEEeeCCCce
Q psy17342        231 DVNNFVVGCEDG--NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW---SVKLWNIKENKPV  305 (401)
Q Consensus       231 ~~~~l~~~~~d~--~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~  305 (401)
                      ++...++|+.++  .+..||...++...+..+.........+...        +.+.+.||.++   .+..||.++.+=.
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~--------g~IYviGG~~~~~~~ve~ydp~~~~W~  389 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASIN--------NVIYVIGGHSETDTTTEYLLPNHDQWQ  389 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEEC--------CEEEEecCcCCCCccEEEEeCCCCEEE
Confidence            566777777543  4677776543221222222111111112221        57778877653   4667877653211


Q ss_pred             E--EEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC----
Q psy17342        306 H--SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK----  379 (401)
Q Consensus       306 ~--~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----  379 (401)
                      .  .+....... +++ .-++. +++.|+   .+.+||..+++-........+ ......+.  -+|+..+.|+.+    
T Consensus       390 ~~~~m~~~r~~~-~~~-~~~~~-IYv~GG---~~e~ydp~~~~W~~~~~m~~~-r~~~~~~v--~~~~IYviGG~~~~~~  460 (480)
T PHA02790        390 FGPSTYYPHYKS-CAL-VFGRR-LFLVGR---NAEFYCESSNTWTLIDDPIYP-RDNPELII--VDNKLLLIGGFYRGSY  460 (480)
T ss_pred             eCCCCCCccccc-eEE-EECCE-EEEECC---ceEEecCCCCcEeEcCCCCCC-ccccEEEE--ECCEEEEECCcCCCcc
Confidence            1  111111111 121 23443 666664   577888876543221111111 11122222  377888888754    


Q ss_pred             -CcEEEEEeccCccc
Q psy17342        380 -GAITMFDVGEVGIA  393 (401)
Q Consensus       380 -g~v~iw~~~~~~~~  393 (401)
                       ..|..||..+++..
T Consensus       461 ~~~ve~Yd~~~~~W~  475 (480)
T PHA02790        461 IDTIEVYNNRTYSWN  475 (480)
T ss_pred             cceEEEEECCCCeEE
Confidence             35889998887543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.08  E-value=0.12  Score=28.92  Aligned_cols=32  Identities=28%  Similarity=0.279  Sum_probs=26.4

Q ss_pred             CceEEEEECCCCC--cEEEEEecCCEEEEEeCCC
Q psy17342        313 DYVMDVQWSPINP--ALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       313 ~~v~~v~~~~~~~--~~l~~~~~d~~i~iwd~~~  344 (401)
                      +.+.++.|+|...  .+|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4688999998643  4888888889999999995

It contains a characteristic DLL sequence motif.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.81  E-value=2  Score=35.83  Aligned_cols=159  Identities=11%  Similarity=0.046  Sum_probs=90.1

Q ss_pred             ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEE
Q psy17342         67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLW  146 (401)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw  146 (401)
                      .+.+.+.+++++.+++....       .....+.++...  .......  ....+..-.|.+++ .+.+....+...+++
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~-------~~~~~L~~~~~~--~~~~~~~--~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~   92 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEG-------DGGRSLYVGPAG--GPVRPVL--TGGSLTRPSWDPDG-WVWTVDDGSGGVRVV   92 (253)
T ss_pred             cccceEECCCCCeEEEEEEc-------CCCCEEEEEcCC--Ccceeec--cCCccccccccCCC-CEEEEEcCCCceEEE
Confidence            58889999999988776620       133455555443  3332222  24478888999986 555555555666666


Q ss_pred             E-CCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEe---CCCcEEEeeccCCCCC-ccccccccccccCCccc
Q psy17342        147 D-TRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS---NDGRLCSWSLEMLSSP-QETRDLQYNNKQTKNLA  221 (401)
Q Consensus       147 ~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~  221 (401)
                      . ...+......   +....-.+.|..+.+  +++|..++...   .++.|.+=-+...... .................
T Consensus        93 ~~~~~g~~~~~~---v~~~~~~~~I~~l~v--SpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~  167 (253)
T PF10647_consen   93 RDSASGTGEPVE---VDWPGLRGRITALRV--SPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSD  167 (253)
T ss_pred             EecCCCcceeEE---ecccccCCceEEEEE--CCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCc
Confidence            4 2333322211   111222228999999  99999888766   3467777665432222 11111111001123568


Q ss_pred             eEEEEeccCCCCeEEEEcCCce
Q psy17342        222 VLSLAFPQNDVNNFVVGCEDGN  243 (401)
Q Consensus       222 v~~~~~~~~~~~~l~~~~~d~~  243 (401)
                      +..++|. ++..+++.+...+.
T Consensus       168 v~~v~W~-~~~~L~V~~~~~~~  188 (253)
T PF10647_consen  168 VTDVAWS-DDSTLVVLGRSAGG  188 (253)
T ss_pred             ceeeeec-CCCEEEEEeCCCCC
Confidence            8999999 67776666654433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA02790 Kelch-like protein; Provisional

Probab=94.74  E-value=2.3  Score=39.47  Aligned_cols=185  Identities=10%  Similarity=-0.019  Sum_probs=79.8

Q ss_pred             CCceEEEEecCC-----eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC--cEEEeeccCCC
Q psy17342        130 NPYLILGGTYSG-----QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG--RLCSWSLEMLS  202 (401)
Q Consensus       130 ~~~~l~~g~~dg-----~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~~wd~~~~~  202 (401)
                      +..+++.|+.++     .+..||..++.-.....  +  .........+.    -++...+.|+.++  .+..||.... 
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~--m--~~~r~~~~~v~----~~~~iYviGG~~~~~sve~ydp~~n-  341 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPP--M--NSPRLYASGVP----ANNKLYVVGGLPNPTSVERWFHGDA-  341 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCC--C--CchhhcceEEE----ECCEEEEECCcCCCCceEEEECCCC-
Confidence            335667776543     46677777654322111  1  11111112222    2667777777543  4677775431 


Q ss_pred             CCccccccccccccCCccceEEEEeccCCCCeEEEEcCCc---eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCC
Q psy17342        203 SPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG---NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHI  279 (401)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  279 (401)
                      .-.....+..     ..... +++.  -++.+.++|+.++   .+..||...+.-.....+.........+.+.      
T Consensus       342 ~W~~~~~l~~-----~r~~~-~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~------  407 (480)
T PHA02790        342 AWVNMPSLLK-----PRCNP-AVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFG------  407 (480)
T ss_pred             eEEECCCCCC-----CCccc-EEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEEC------
Confidence            1111111111     11111 2222  3567777777553   3667777644322211111111111112221      


Q ss_pred             CCCcEEEEEeCCCeEEEEEeeCCCce--EEEeecCCceEEEEECCCCCcEEEEEecC-----CEEEEEeCCCC
Q psy17342        280 DFSHLYLTSSYDWSVKLWNIKENKPV--HSFNEFRDYVMDVQWSPINPALFATVEVA-----GRVDLWNLNLD  345 (401)
Q Consensus       280 ~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~v~~v~~~~~~~~~l~~~~~d-----~~i~iwd~~~~  345 (401)
                        +.+.+.|+   .+.+||.++.+=.  ..+....... +++. -+++ +++.||.+     ..+..||..++
T Consensus       408 --~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~-IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        408 --RRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNK-LLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             --CEEEEECC---ceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCE-EEEECCcCCCcccceEEEEECCCC
Confidence              45666664   4677887654311  1111111112 2222 2343 77777754     24556665543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.68  E-value=1.1  Score=43.30  Aligned_cols=82  Identities=17%  Similarity=0.306  Sum_probs=53.5

Q ss_pred             ceEEEEECCCCCcEEEEEecCCEEEEEeCCC----------CCCCcceE-E-------eecCCCCeEEEEecCC---CcE
Q psy17342        314 YVMDVQWSPINPALFATVEVAGRVDLWNLNL----------DTEVPATS-A-------IVEGAPALSRVTWTPN---GTQ  372 (401)
Q Consensus       314 ~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~----------~~~~~~~~-~-------~~~~~~~v~~~~~s~~---g~~  372 (401)
                      .|..|.++|+|. +++..|..| |.|-.+..          ++....++ .       .......|..+.|+|.   +..
T Consensus        86 ~v~~i~~n~~g~-~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   86 EVHQISLNPTGS-LLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eEEEEEECCCCC-EEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            688999999998 566666554 55554432          11111111 0       0123457899999997   588


Q ss_pred             EEEEecCCcEEEEEeccCccceeeee
Q psy17342        373 LCVGDEKGAITMFDVGEVGIACLKFI  398 (401)
Q Consensus       373 l~~~~~dg~v~iw~~~~~~~~~l~~~  398 (401)
                      |++-.+|+++++||+.... .+.+++
T Consensus       164 l~vLtsdn~lR~y~~~~~~-~p~~v~  188 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQ-HPWQVL  188 (717)
T ss_pred             EEEEecCCEEEEEecCCCC-CCeEEE
Confidence            9999999999999997643 444443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.62  E-value=2.9  Score=36.76  Aligned_cols=237  Identities=10%  Similarity=0.015  Sum_probs=100.8

Q ss_pred             EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEec----------
Q psy17342         70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTY----------  139 (401)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~----------  139 (401)
                      ...++|+.+.++..-          ....|+--|+++.+....+... ..-+-...|..+.....+.|..          
T Consensus        85 g~~~s~~~~~~~Yv~----------~~~~l~~vdL~T~e~~~vy~~p-~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~  153 (386)
T PF14583_consen   85 GGFLSPDDRALYYVK----------NGRSLRRVDLDTLEERVVYEVP-DDWKGYGTWVANSDCTKLVGIEISREDWKPLT  153 (386)
T ss_dssp             T-EE-TTSSEEEEEE----------TTTEEEEEETTT--EEEEEE---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----
T ss_pred             ceEEecCCCeEEEEE----------CCCeEEEEECCcCcEEEEEECC-cccccccceeeCCCccEEEEEEEeehhccCcc
Confidence            355667777777665          4567888888876544333332 3334345664322222222221          


Q ss_pred             -------------CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC-----cEEEeeccCC
Q psy17342        140 -------------SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG-----RLCSWSLEML  201 (401)
Q Consensus       140 -------------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~~wd~~~~  201 (401)
                                   ...|.--|+.+++...+       ..-...+..+.|  +|....+++=+..|     .-++|-++..
T Consensus       154 ~~~~f~e~~~a~p~~~i~~idl~tG~~~~v-------~~~~~wlgH~~f--sP~dp~li~fCHEGpw~~Vd~RiW~i~~d  224 (386)
T PF14583_consen  154 KWKGFREFYEARPHCRIFTIDLKTGERKVV-------FEDTDWLGHVQF--SPTDPTLIMFCHEGPWDLVDQRIWTINTD  224 (386)
T ss_dssp             SHHHHHHHHHC---EEEEEEETTT--EEEE-------EEESS-EEEEEE--ETTEEEEEEEEE-S-TTTSS-SEEEEETT
T ss_pred             ccHHHHHHHhhCCCceEEEEECCCCceeEE-------EecCccccCccc--CCCCCCEEEEeccCCcceeceEEEEEEcC
Confidence                         01233334444443211       122344556666  66655555443332     1367877653


Q ss_pred             CCCccccccccccccCCccceEEEEeccCCCCeEEEE-----cCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccC
Q psy17342        202 SSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVG-----CEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQ  276 (401)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  276 (401)
                      +.....+.  .   ......+..=-|. +++..+.--     ..+..|.-++........+...    ....-+..+++ 
T Consensus       225 g~~~~~v~--~---~~~~e~~gHEfw~-~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~----p~~~H~~ss~D-  293 (386)
T PF14583_consen  225 GSNVKKVH--R---RMEGESVGHEFWV-PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM----PWCSHFMSSPD-  293 (386)
T ss_dssp             S---EESS--------TTEEEEEEEE--TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-----SEEEEEE-TT-
T ss_pred             CCcceeee--c---CCCCccccccccc-CCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC----CceeeeEEcCC-
Confidence            33332221  1   1123445555677 677765432     2233455566654332211111    12223333444 


Q ss_pred             CCCCCCcEEEEEeCCC----------------eEEEEEeeCCCceEEEeecCC-----------ceEEEEECCCCCcEEE
Q psy17342        277 GHIDFSHLYLTSSYDW----------------SVKLWNIKENKPVHSFNEFRD-----------YVMDVQWSPINPALFA  329 (401)
Q Consensus       277 ~~~~~~~~l~s~~~d~----------------~i~iwd~~~~~~~~~~~~~~~-----------~v~~v~~~~~~~~~l~  329 (401)
                           +.+++-=+.|.                -|+++++..++.. .+..|..           .=....|+||++.+|.
T Consensus       294 -----g~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF  367 (386)
T PF14583_consen  294 -----GKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLF  367 (386)
T ss_dssp             -----SSEEEEEE-------------------EEEEEETTTTEEE-EEEE-------BTTBSSTT----EE-TTSSEEEE
T ss_pred             -----CCEEEecCCCCCccccccccceecCCcEEEEeccccCcee-eeeeccCcceeecCCCccCCCCCccCCCCCEEEE
Confidence                 56665434332                4556776654432 2222211           1235789999999999


Q ss_pred             EEecCCEEEEEeCC
Q psy17342        330 TVEVAGRVDLWNLN  343 (401)
Q Consensus       330 ~~~~d~~i~iwd~~  343 (401)
                      .+...|...||-+.
T Consensus       368 ~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  368 RSDMEGPPAVYLVE  381 (386)
T ss_dssp             EE-TTSS-EEEEEE
T ss_pred             ECCCCCCccEEEEe
Confidence            98888887777543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.61  E-value=2  Score=38.29  Aligned_cols=146  Identities=11%  Similarity=0.129  Sum_probs=76.3

Q ss_pred             cceEEEEeccCCCCeEEEEc-----------CCc-eEEEEeCCCCCCC--ceeeecCCCCceeeeecCccCCCCCCCcEE
Q psy17342        220 LAVLSLAFPQNDVNNFVVGC-----------EDG-NVYSACRHGNKAG--NVECYEGHEGPVVGLSSHRAQGHIDFSHLY  285 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~-----------~d~-~i~~~~~~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l  285 (401)
                      .....|+|. ++++++++-.           ..+ .|.+++-......  ....+.........+++.+.      + ++
T Consensus        14 ~~P~~ia~d-~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~------G-ly   85 (367)
T TIGR02604        14 RNPIAVCFD-ERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVG------G-VY   85 (367)
T ss_pred             CCCceeeEC-CCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecC------C-EE
Confidence            356788888 7787776643           223 6777654332222  22334333344577888876      5 55


Q ss_pred             EEEeCCCeEEEEEeeC-C----CceE---EEee----cCCceEEEEECCCCCcEEEEEecC-------------------
Q psy17342        286 LTSSYDWSVKLWNIKE-N----KPVH---SFNE----FRDYVMDVQWSPINPALFATVEVA-------------------  334 (401)
Q Consensus       286 ~s~~~d~~i~iwd~~~-~----~~~~---~~~~----~~~~v~~v~~~~~~~~~l~~~~~d-------------------  334 (401)
                      ++ +.....++.|... +    +...   .+..    +......++|.|+|. +.++-+..                   
T Consensus        86 V~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~  163 (367)
T TIGR02604        86 VA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLG  163 (367)
T ss_pred             Ee-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCcccccC
Confidence            54 3343333334421 1    2111   1222    123477899999997 44443311                   


Q ss_pred             CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC
Q psy17342        335 GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK  379 (401)
Q Consensus       335 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  379 (401)
                      |.|.-++....+    ++....+......++|+++|+++++-..+
T Consensus       164 g~i~r~~pdg~~----~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       164 GGLFRYNPDGGK----LRVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             ceEEEEecCCCe----EEEEecCcCCCccceECCCCCEEEEccCC
Confidence            334444444322    12222333446789999999887764433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=94.35  E-value=0.62  Score=41.15  Aligned_cols=169  Identities=14%  Similarity=0.052  Sum_probs=94.2

Q ss_pred             cCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceE-EEEeccCCCCeEEEEcCCc
Q psy17342        164 MAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL-SLAFPQNDVNNFVVGCEDG  242 (401)
Q Consensus       164 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~d~  242 (401)
                      ......|..+-.  .|+++.+..-+. ..+.++++.+  ++.+..++...........|+ .+... ..+..++++..||
T Consensus       217 ~~~~~~v~qllL--~Pdg~~LYv~~g-~~~~v~~L~~--r~l~~rkl~~dspg~~~~~Vte~l~lL-~Gg~SLLv~~~dG  290 (733)
T COG4590         217 SVPFSDVSQLLL--TPDGKTLYVRTG-SELVVALLDK--RSLQIRKLVDDSPGDSRHQVTEQLYLL-SGGFSLLVVHEDG  290 (733)
T ss_pred             CCCccchHhhEE--CCCCCEEEEecC-CeEEEEeecc--cccchhhhhhcCCCchHHHHHHHHHHH-hCceeEEEEcCCC
Confidence            344456666766  889988877666 6788888874  222222322200000112222 22223 4566788899999


Q ss_pred             eEEEE-eCCCCCCCc---eeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEE
Q psy17342        243 NVYSA-CRHGNKAGN---VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDV  318 (401)
Q Consensus       243 ~i~~~-~~~~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v  318 (401)
                      .|.-| |.+......   ++.++-...++.-+.-..+      .+-+++-+..|++.++.....+++..-.. -..+.-+
T Consensus       291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~------rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~~~~~~~  363 (733)
T COG4590         291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETN------RKGFYSLYRNGTLQSFYSTSEKLLLFERA-YQAPQLV  363 (733)
T ss_pred             ceeeeeeeecCCCCcceeeeccccCcccceeeccccc------cceEEEEcCCCceeeeecccCcceehhhh-hcCccee
Confidence            99776 444222111   1122211222322222222      46778888888888887655444432222 3356678


Q ss_pred             EECCCCCcEEEEEecCCEEEEEeCCCCCC
Q psy17342        319 QWSPINPALFATVEVAGRVDLWNLNLDTE  347 (401)
Q Consensus       319 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  347 (401)
                      ++||.+. .+++- ..|.++++.+++...
T Consensus       364 ~~Sp~~~-~Ll~e-~~gki~~~~l~Nr~P  390 (733)
T COG4590         364 AMSPNQA-YLLSE-DQGKIRLAQLENRNP  390 (733)
T ss_pred             eeCcccc-hheee-cCCceEEEEecCCCC
Confidence            9999997 45543 467899999887553

>KOG4460|consensus

Probab=93.87  E-value=1.7  Score=39.25  Aligned_cols=77  Identities=9%  Similarity=0.082  Sum_probs=50.5

Q ss_pred             ceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE---------eeCCCceEEEee-----------cCCceEEEEECCCC-
Q psy17342        266 PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN---------IKENKPVHSFNE-----------FRDYVMDVQWSPIN-  324 (401)
Q Consensus       266 ~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd---------~~~~~~~~~~~~-----------~~~~v~~v~~~~~~-  324 (401)
                      .|..+..++.      |..++-.+.+|.+.++=         ++.+++......           ..-.+..++|+|+. 
T Consensus       105 eV~~vl~s~~------GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~  178 (741)
T KOG4460|consen  105 EVYQVLLSPT------GSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSI  178 (741)
T ss_pred             EEEEEEecCC------CceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCcc
Confidence            4677788887      67888788788665543         123433322111           11246678999986 


Q ss_pred             -CcEEEEEecCCEEEEEeCCCCCCC
Q psy17342        325 -PALFATVEVAGRVDLWNLNLDTEV  348 (401)
Q Consensus       325 -~~~l~~~~~d~~i~iwd~~~~~~~  348 (401)
                       ...+..-+.|+.||+||+...+.+
T Consensus       179 ~D~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  179 LDPHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             CCceEEEEecCcEEEEEecCCcchh
Confidence             445666778999999999876654

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.87  E-value=1.5  Score=38.92  Aligned_cols=160  Identities=16%  Similarity=0.126  Sum_probs=91.1

Q ss_pred             CccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCC----cee-eeecCccCCCCCCCcEEEEEeCCC
Q psy17342        218 KNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEG----PVV-GLSSHRAQGHIDFSHLYLTSSYDW  292 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~----~v~-~i~~~~~~~~~~~~~~l~s~~~d~  292 (401)
                      ....+..+-.. |+++.+.+-+. ..+.++++.+...+..+......+    .|+ ++..-..      +.-++.++.||
T Consensus       219 ~~~~v~qllL~-Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~G------g~SLLv~~~dG  290 (733)
T COG4590         219 PFSDVSQLLLT-PDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSG------GFSLLVVHEDG  290 (733)
T ss_pred             CccchHhhEEC-CCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhC------ceeEEEEcCCC
Confidence            34456667777 88988877665 667777776544322222221111    122 2221111      56677788899


Q ss_pred             eEEEE-EeeC-CCc----eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEe
Q psy17342        293 SVKLW-NIKE-NKP----VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTW  366 (401)
Q Consensus       293 ~i~iw-d~~~-~~~----~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  366 (401)
                      -|.-| |.+. +.+    ++.++-...++..+.-..+.+ -+++-...|++..+.....+.+-. .   .--..+..+++
T Consensus       291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rk-gF~~l~~~G~L~~f~st~~~~lL~-~---~~~~~~~~~~~  365 (733)
T COG4590         291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRK-GFYSLYRNGTLQSFYSTSEKLLLF-E---RAYQAPQLVAM  365 (733)
T ss_pred             ceeeeeeeecCCCCcceeeeccccCcccceeeccccccc-eEEEEcCCCceeeeecccCcceeh-h---hhhcCcceeee
Confidence            88877 5543 222    122222223343333222333 678888889998887654433211 1   11234667899


Q ss_pred             cCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        367 TPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       367 s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      ||.+.+|++-. .|.++++.+++..
T Consensus       366 Sp~~~~Ll~e~-~gki~~~~l~Nr~  389 (733)
T COG4590         366 SPNQAYLLSED-QGKIRLAQLENRN  389 (733)
T ss_pred             Ccccchheeec-CCceEEEEecCCC
Confidence            99999998655 4669999998763

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.64  E-value=3  Score=33.26  Aligned_cols=144  Identities=14%  Similarity=0.158  Sum_probs=85.2

Q ss_pred             CeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC------eEEEE---Eee--C
Q psy17342        233 NNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW------SVKLW---NIK--E  301 (401)
Q Consensus       233 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~------~i~iw---d~~--~  301 (401)
                      ..|.++...+.|.+|++.....+++..|.. -+.|..+.++..      |++++|--.+.      .+|+|   +..  .
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~------GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~  101 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEA------GDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE  101 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccc------cceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence            455555777889999998655566667764 488999999988      89999875422      56665   222  1


Q ss_pred             CCceE-EEee---------------------cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC-CcceEEe----
Q psy17342        302 NKPVH-SFNE---------------------FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE-VPATSAI----  354 (401)
Q Consensus       302 ~~~~~-~~~~---------------------~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~----  354 (401)
                      .+++. .+-+                     -..++.+++..|....+++ |+ ++.+.+|.+..... ...+...    
T Consensus       102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~~~~~~~~lDFe~  179 (215)
T PF14761_consen  102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTIQSEKFSFLDFER  179 (215)
T ss_pred             CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEEecccccEEechh
Confidence            22222 1111                     1335677888886554544 43 56899998865433 1111110    


Q ss_pred             --ecC--CCCeEEEEecCCCcEEEEEecCCcEEEEEec
Q psy17342        355 --VEG--APALSRVTWTPNGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       355 --~~~--~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~  388 (401)
                        ..+  .-....+++  .+.++|..+.. .+++.++.
T Consensus       180 ~l~~~~~~~~p~~v~i--c~~yiA~~s~~-ev~Vlkl~  214 (215)
T PF14761_consen  180 SLIDHIDNFKPTQVAI--CEGYIAVMSDL-EVLVLKLE  214 (215)
T ss_pred             hhhheecCceEEEEEE--EeeEEEEecCC-EEEEEEEe
Confidence              011  112344555  46678877654 58887764

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.55  E-value=4.3  Score=34.77  Aligned_cols=237  Identities=14%  Similarity=0.111  Sum_probs=97.8

Q ss_pred             EEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccC-CCCcEEEEEEeecCCceEEEEEeCCCc
Q psy17342        114 EFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMA-HTHPVFCMSVIGTQNAHNLISISNDGR  192 (401)
Q Consensus       114 ~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~  192 (401)
                      .+.....+.+|.|.. ..+-+++|. .+.|  +....+-..-.... ..... ..-...++.|  ..+ ..+++| ..+.
T Consensus        12 ~l~t~~~l~dV~F~d-~~~G~~VG~-~g~i--l~T~DGG~tW~~~~-~~~~~~~~~~l~~I~f--~~~-~g~ivG-~~g~   82 (302)
T PF14870_consen   12 SLPTDKPLLDVAFVD-PNHGWAVGA-YGTI--LKTTDGGKTWQPVS-LDLDNPFDYHLNSISF--DGN-EGWIVG-EPGL   82 (302)
T ss_dssp             E-S-SS-EEEEEESS-SS-EEEEET-TTEE--EEESSTTSS-EE------S-----EEEEEEE--ETT-EEEEEE-ETTE
T ss_pred             ecCCCCceEEEEEec-CCEEEEEec-CCEE--EEECCCCccccccc-cCCCccceeeEEEEEe--cCC-ceEEEc-CCce
Confidence            344467899999984 335666664 5543  33333222111110 00011 1223566776  333 344444 4443


Q ss_pred             EEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeec
Q psy17342        193 LCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSS  272 (401)
Q Consensus       193 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~  272 (401)
                       .+...+ .+..-..+.+... +.   .....+... .+. .....+..|.|+.=.-.+.+-  ......-.+.+..+..
T Consensus        83 -ll~T~D-gG~tW~~v~l~~~-lp---gs~~~i~~l-~~~-~~~l~~~~G~iy~T~DgG~tW--~~~~~~~~gs~~~~~r  152 (302)
T PF14870_consen   83 -LLHTTD-GGKTWERVPLSSK-LP---GSPFGITAL-GDG-SAELAGDRGAIYRTTDGGKTW--QAVVSETSGSINDITR  152 (302)
T ss_dssp             -EEEESS-TTSS-EE----TT--S---S-EEEEEEE-ETT-EEEEEETT--EEEESSTTSSE--EEEE-S----EEEEEE
T ss_pred             -EEEecC-CCCCcEEeecCCC-CC---CCeeEEEEc-CCC-cEEEEcCCCcEEEeCCCCCCe--eEcccCCcceeEeEEE
Confidence             232222 2222222211110 11   122233333 233 333345556666533222221  2223344577888888


Q ss_pred             CccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceE
Q psy17342        273 HRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATS  352 (401)
Q Consensus       273 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  352 (401)
                      .++      +.++++++...-..-||--...-...-..-...|.++.|.|++. +.+ ....|.|+.=+.....  ....
T Consensus       153 ~~d------G~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~~~--~~w~  222 (302)
T PF14870_consen  153 SSD------GRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPDDG--ETWS  222 (302)
T ss_dssp             -TT------S-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEE--EEE-
T ss_pred             CCC------CcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC-EEE-EeCCcEEEEccCCCCc--cccc
Confidence            887      78887776544455676432111111122357899999999986 444 4478899887721111  1111


Q ss_pred             E---e-ecCCCCeEEEEecCCCcEEEEEecC
Q psy17342        353 A---I-VEGAPALSRVTWTPNGTQLCVGDEK  379 (401)
Q Consensus       353 ~---~-~~~~~~v~~~~~s~~g~~l~~~~~d  379 (401)
                      .   . ....-.+..++|.+++...++|+..
T Consensus       223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  223 EPIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             --B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             cccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence            1   0 0123347899999998877766643

>KOG2247|consensus

Probab=93.46  E-value=0.01  Score=52.13  Aligned_cols=129  Identities=10%  Similarity=0.099  Sum_probs=88.4

Q ss_pred             cCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCe-EEEEcCCceEEEEeCCCCCCCc
Q psy17342        178 TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNN-FVVGCEDGNVYSACRHGNKAGN  256 (401)
Q Consensus       178 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~d~~i~~~~~~~~~~~~  256 (401)
                      .+++..++.++.+..+..||-..    +...+..      .+.....++|. .++.. ++.+-..+.+++|++..+..+.
T Consensus        43 ~~e~~nlavaca~tiv~~YD~ag----q~~le~n------~tg~aldm~wD-kegdvlavlAek~~piylwd~n~eytqq  111 (615)
T KOG2247|consen   43 RPEGHNLAVACANTIVIYYDKAG----QVILELN------PTGKALDMAWD-KEGDVLAVLAEKTGPIYLWDVNSEYTQQ  111 (615)
T ss_pred             ecCCCceehhhhhhHHHhhhhhc----ceecccC------CchhHhhhhhc-cccchhhhhhhcCCCeeechhhhhhHHH
Confidence            67777788888888899998542    1111111      33456677787 45544 4556778899999997654333


Q ss_pred             eeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCC
Q psy17342        257 VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINP  325 (401)
Q Consensus       257 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~  325 (401)
                      +..-..|....  +.|++.      ...++.+...+.+.|++..+.+.+...-.|...++++++.+.+.
T Consensus       112 LE~gg~~s~sl--l~wsKg------~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~  172 (615)
T KOG2247|consen  112 LESGGTSSKSL--LAWSKG------TPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY  172 (615)
T ss_pred             HhccCcchHHH--HhhccC------CccccccccccceEEEeccchhhhhhhcccccceeEEEecccce
Confidence            32222233333  678887      57777888899999999988777666665888999999999874

>KOG1916|consensus

Probab=93.46  E-value=0.18  Score=48.20  Aligned_cols=190  Identities=9%  Similarity=0.035  Sum_probs=104.1

Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCC-CCccccccccccccCC
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLS-SPQETRDLQYNNKQTK  218 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~~~~  218 (401)
                      .+.+++-+....-..   +  .-.++..+.|-.+.|. +-+...+.  -.-|.+.+|++.... +.+....+..  ....
T Consensus       110 ~~~vrvaN~~~sm~~---~--~l~kgf~G~v~dl~fa-h~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~--~~p~  179 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMRH---N--ELAKGFPGGVGDLQFA-HTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTP--ITPY  179 (1283)
T ss_pred             hhhhhhccCcchhHH---H--HHHhcCCCCccccccc-ccCChHHH--HHhhhhheeehHhhccccccceEEee--cCcC
Confidence            455676665543220   0  1236778888888884 22222232  334678899886422 1222222221  2223


Q ss_pred             ccceEEEEecc--CCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeec-----------CccCCCCCCCcEE
Q psy17342        219 NLAVLSLAFPQ--NDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSS-----------HRAQGHIDFSHLY  285 (401)
Q Consensus       219 ~~~v~~~~~~~--~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~-----------~~~~~~~~~~~~l  285 (401)
                      ...+.-+.|.|  .+..++..+-.++.+++...+..   ....+.+|...+..+++           +|+      |..|
T Consensus       180 gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra---~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpD------Gtv~  250 (1283)
T KOG1916|consen  180 GSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA---LRSLFRSHSQRVTDMAFFAEGVLKLASLSPD------GTVF  250 (1283)
T ss_pred             CCCcceeeecccccccceeeeccCCCceeEeeechH---HHHHHHhcCCCcccHHHHhhchhhheeeCCC------CcEE
Confidence            33445555553  34566777788888888766432   22455667766665543           565      7899


Q ss_pred             EEEeCCCeEEEEEee-----CCCceEEEeecCC-ceEEEEECCCC-------Cc-EEEEE-ecCCEEEEEeCCCCCCC
Q psy17342        286 LTSSYDWSVKLWNIK-----ENKPVHSFNEFRD-YVMDVQWSPIN-------PA-LFATV-EVAGRVDLWNLNLDTEV  348 (401)
Q Consensus       286 ~s~~~d~~i~iwd~~-----~~~~~~~~~~~~~-~v~~v~~~~~~-------~~-~l~~~-~~d~~i~iwd~~~~~~~  348 (401)
                      +.+..||.++.|.+.     .-++++.++.|.+ +-.|.-++.+.       .+ +++++ ..+..+++|.-...+++
T Consensus       251 a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  251 AWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             EEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            999999988888763     3356667777763 22222233221       11 22332 23456778876554443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=93.39  E-value=8.7  Score=37.82  Aligned_cols=151  Identities=11%  Similarity=0.064  Sum_probs=84.2

Q ss_pred             CCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCce-------------eeeecCccCCCCCCCcEEEEEeC--------
Q psy17342        232 VNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPV-------------VGLSSHRAQGHIDFSHLYLTSSY--------  290 (401)
Q Consensus       232 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v-------------~~i~~~~~~~~~~~~~~l~s~~~--------  290 (401)
                      ...++.++.|+.++-.|..+.  +....+. ..+.|             ..+.-.|.-   . +..++.|+.        
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TG--k~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V---~-~g~VIvG~~v~d~~~~~  332 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTG--KLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLV---A-GTTVVIGGRVADNYSTD  332 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCC--CEEEEec-CCCceeeecccCcCCCcccccccCCEE---E-CCEEEEEeccccccccc
Confidence            457888999999998887743  3343332 11111             011111210   0 345666643        


Q ss_pred             --CCeEEEEEeeCCCceEEEeec---------CC--------ce-EEEEECCCCCcEEEEEe------------------
Q psy17342        291 --DWSVKLWNIKENKPVHSFNEF---------RD--------YV-MDVQWSPINPALFATVE------------------  332 (401)
Q Consensus       291 --d~~i~iwd~~~~~~~~~~~~~---------~~--------~v-~~v~~~~~~~~~l~~~~------------------  332 (401)
                        +|.|+-+|.++|+.+..+..-         .+        .+ ...++.|... +++.+.                  
T Consensus       333 ~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g-lvy~ptGn~~pd~~g~~r~~~~n~  411 (764)
T TIGR03074       333 EPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG-LVYLPMGNQTPDQWGGDRTPADEK  411 (764)
T ss_pred             CCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCC-eEEEeCCCccccccCCccccCccc
Confidence              688999999999988876521         00        01 2234444443 222211                  


Q ss_pred             cCCEEEEEeCCCCCCCcceEEeecCC-------CCeEEEEecC-CCc---EEEEEecCCcEEEEEeccCc
Q psy17342        333 VAGRVDLWNLNLDTEVPATSAIVEGA-------PALSRVTWTP-NGT---QLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       333 ~d~~i~iwd~~~~~~~~~~~~~~~~~-------~~v~~~~~s~-~g~---~l~~~~~dg~v~iw~~~~~~  391 (401)
                      ..+.|.-.|.++++....++. ..|.       ....-+.+.. +|+   .++.++.+|.+++.|-++++
T Consensus       412 y~~slvALD~~TGk~~W~~Q~-~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~  480 (764)
T TIGR03074       412 YSSSLVALDATTGKERWVFQT-VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE  480 (764)
T ss_pred             ccceEEEEeCCCCceEEEecc-cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence            234566677777776554432 1221       1111122332 563   78999999999999999985

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PLN02193 nitrile-specifier protein

Probab=93.08  E-value=4.9  Score=37.23  Aligned_cols=72  Identities=8%  Similarity=0.071  Sum_probs=38.4

Q ss_pred             CCCcEEEEEecC----CEEEEEeCCCCCCCcceEE-eecCC-CCeEEEEecCCCcEEEEEecC--------------CcE
Q psy17342        323 INPALFATVEVA----GRVDLWNLNLDTEVPATSA-IVEGA-PALSRVTWTPNGTQLCVGDEK--------------GAI  382 (401)
Q Consensus       323 ~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~-~~~~~-~~v~~~~~s~~g~~l~~~~~d--------------g~v  382 (401)
                      +++ +++.++.+    ..+.+||+.+.+-...... ..+.. .....+  .-++++++.|+..              ..+
T Consensus       328 ~gk-iyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv  404 (470)
T PLN02193        328 QGK-VWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA--AVGKHIVIFGGEIAMDPLAHVGPGQLTDGT  404 (470)
T ss_pred             CCc-EEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE--EECCEEEEECCccCCccccccCccceeccE
Confidence            454 66666654    4688999887543211100 00001 111222  2356777777753              248


Q ss_pred             EEEEeccCccceeee
Q psy17342        383 TMFDVGEVGIACLKF  397 (401)
Q Consensus       383 ~iw~~~~~~~~~l~~  397 (401)
                      .+||+.+.+...+..
T Consensus       405 ~~~D~~t~~W~~~~~  419 (470)
T PLN02193        405 FALDTETLQWERLDK  419 (470)
T ss_pred             EEEEcCcCEEEEccc
Confidence            899998876655543

>KOG2063|consensus

Probab=93.07  E-value=9.5  Score=37.74  Aligned_cols=79  Identities=14%  Similarity=0.092  Sum_probs=48.9

Q ss_pred             hhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEE
Q psy17342          3 WAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL   82 (401)
Q Consensus         3 ~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   82 (401)
                      -++.++.+..|+.+|.+..+.......-... ...          .....+.+.+.      +.+|..+...+.-..+++
T Consensus        22 va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~-~~~----------~~~~~~~~~~~------kk~i~~l~~~~~~~~ll~   84 (877)
T KOG2063|consen   22 VAAYGNHLYVGTRDGDLYLYSIYERGNPESV-ELV----------TETVKFEKEFS------KKPINKLLVCASLELLLI   84 (877)
T ss_pred             HHHhCCEEEEEcCCCcEEEEeccccccccch-hhh----------cchhHHhhhhc------cchhHHHhhcchhcchhe
Confidence            3567889999999999999876555421111 000          00011111111      367888888887777777


Q ss_pred             EEeccCCCCCCCCCcEEEEEeCcCCCC
Q psy17342         83 ASYHRNKEAPNEPDGVCLIWNTKFKKT  109 (401)
Q Consensus        83 ~~~~~~~~~~~~~d~~v~iwd~~~~~~  109 (401)
                      -+           |+.|.++++.+-+.
T Consensus        85 l~-----------dsqi~~~~l~~~~~  100 (877)
T KOG2063|consen   85 LS-----------DSQIAVHKLPELEP  100 (877)
T ss_pred             ec-----------CCcceeeecCcccc
Confidence            77           88899998875433

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=92.90  E-value=5.9  Score=34.53  Aligned_cols=63  Identities=14%  Similarity=0.098  Sum_probs=32.3

Q ss_pred             CcEEEEEeC-----CCeEEEEEeeCCCc--eEEEeecCCceEEEEECCCCCcEEEEEecCC----EEEEEeCCCCC
Q psy17342        282 SHLYLTSSY-----DWSVKLWNIKENKP--VHSFNEFRDYVMDVQWSPINPALFATVEVAG----RVDLWNLNLDT  346 (401)
Q Consensus       282 ~~~l~s~~~-----d~~i~iwd~~~~~~--~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~----~i~iwd~~~~~  346 (401)
                      +.+++.|+.     ...+..||+.+.+=  +..+.. .......+...++. +++.|+.++    .+..||..+.+
T Consensus       124 ~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~-iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       124 GTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNE-LYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             CEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCE-EEEEcCCCCccccceEEEecCCCe
Confidence            467777764     23577888765432  111111 11111222233444 777777653    35678887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG2377|consensus

Probab=92.78  E-value=6.9  Score=35.00  Aligned_cols=128  Identities=11%  Similarity=0.043  Sum_probs=76.5

Q ss_pred             CcEEEEEeCcC--CCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEE
Q psy17342         96 DGVCLIWNTKF--KKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCM  173 (401)
Q Consensus        96 d~~v~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  173 (401)
                      .|.+.=|-++.  ....+.+.....++|.++.|++|+ +.+|.--.+.+|.+.+....+......  ...+..+..|...
T Consensus        42 SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~--~~ck~k~~~IlGF  118 (657)
T KOG2377|consen   42 SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYT--QECKTKNANILGF  118 (657)
T ss_pred             cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHH--HHhccCcceeEEE
Confidence            55566666553  233444445567899999999987 788888889999999985544322111  1123445568888


Q ss_pred             EEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEE
Q psy17342        174 SVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVG  238 (401)
Q Consensus       174 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  238 (401)
                      .|  ..+ .-++..+..| +-+|......  .....     ...+...|.-..|. ++.+.++.+
T Consensus       119 ~W--~~s-~e~A~i~~~G-~e~y~v~pek--rslRl-----Vks~~~nvnWy~yc-~et~v~LL~  171 (657)
T KOG2377|consen  119 CW--TSS-TEIAFITDQG-IEFYQVLPEK--RSLRL-----VKSHNLNVNWYMYC-PETAVILLS  171 (657)
T ss_pred             EE--ecC-eeEEEEecCC-eEEEEEchhh--hhhhh-----hhhcccCccEEEEc-cccceEeee
Confidence            88  433 4455554443 5666554211  11111     12366778888888 555554433

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.78  E-value=6.8  Score=34.93  Aligned_cols=101  Identities=13%  Similarity=0.102  Sum_probs=51.8

Q ss_pred             ceEEEEeccCCCCeEEEEcCCceEEEEeCCCC-----CCC-ceeeecC----CCCceeeeecCccCCCCCCCcEEEEEeC
Q psy17342        221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGN-----KAG-NVECYEG----HEGPVVGLSSHRAQGHIDFSHLYLTSSY  290 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~-----~~~-~~~~~~~----~~~~v~~i~~~~~~~~~~~~~~l~s~~~  290 (401)
                      ....+++. +++  ++++......++.+....     +.+ .+..+..    +......+.|.|+      +.+.++-+.
T Consensus        73 ~p~Gi~~~-~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpD------G~LYv~~G~  143 (367)
T TIGR02604        73 MVTGLAVA-VGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPD------GWLYFNHGN  143 (367)
T ss_pred             CccceeEe-cCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCC------CCEEEeccc
Confidence            45778887 566  555554443344454321     111 1122322    2344678899998      566665442


Q ss_pred             C-------------------CeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEe
Q psy17342        291 D-------------------WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVE  332 (401)
Q Consensus       291 d-------------------~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~  332 (401)
                      .                   +.|.-++...++ +..+...-.....++|+|+|. ++++-.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~-l~~tdn  202 (367)
T TIGR02604       144 TLASKVTRPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGD-VFFCDN  202 (367)
T ss_pred             CCCceeccCCCccCcccccCceEEEEecCCCe-EEEEecCcCCCccceECCCCC-EEEEcc
Confidence            1                   334444444333 222222223356899999997 665543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.45  E-value=3.8  Score=32.69  Aligned_cols=42  Identities=7%  Similarity=0.052  Sum_probs=34.7

Q ss_pred             CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEE
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGG  137 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g  137 (401)
                      ....|.+|++..........+..-+.|..+.++..| ++|++-
T Consensus        36 ~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~G-DYlvTl   77 (215)
T PF14761_consen   36 SGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAG-DYLVTL   77 (215)
T ss_pred             CCCEEEEEEcccCCCceeEEEcchhheeEEEecccc-ceEEEE
Confidence            478899999997777777777778999999999977 677764

>KOG1983|consensus

Probab=92.38  E-value=6.3  Score=40.06  Aligned_cols=233  Identities=14%  Similarity=0.084  Sum_probs=106.5

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS  197 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd  197 (401)
                      ......++|.|.- .+++.|+..|.|+++-...-+.........  .   -.+..+.+  -...........+..+.+|.
T Consensus        35 ~~~~~~~afD~~q-~llai~t~tg~i~~yg~~~ve~~~~~~~~~--~---~~~~~~~~--~~~~s~~~~l~~~~~~~~~~  106 (993)
T KOG1983|consen   35 PSTPSALAFDPTQ-GLLAIGTRTGAIKIYGQPGVEFVGLHPKQN--Q---INVTRIEL--LVGISRNLVLSDDDSLHLWS  106 (993)
T ss_pred             CCCCcceeecccc-ceEEEEEecccEEEecccceEEEecccccc--c---hhhhheee--eecccccceeecccceeeec
Confidence            4566778888854 799999999999999876543321111000  0   11111211  11112233334455566665


Q ss_pred             ccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCcee--eecCCCCceeeeecCcc
Q psy17342        198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVE--CYEGHEGPVVGLSSHRA  275 (401)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~--~~~~~~~~v~~i~~~~~  275 (401)
                      .....   ..         .....+++....+ -... +.| ..+.+++++..........  .+..+...+. ...++.
T Consensus       107 ~~~~~---~~---------~~~~~~~~~~~~~-~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~  170 (993)
T KOG1983|consen  107 IKIKT---GV---------FLKQEITSFVTDP-PPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPY-ESLSPT  170 (993)
T ss_pred             ccccc---ee---------ecCCcceeccCCC-Ccch-hcc-cCceeeEeeechhhhccceecccccccccee-eeeccc
Confidence            54211   11         1223445554442 2223 455 8888888876532211111  1111110000 000000


Q ss_pred             CCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee
Q psy17342        276 QGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV  355 (401)
Q Consensus       276 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  355 (401)
                      .     .-.....  +-.-.+|.+....  ..+..+..++.+..+....+  ++.+..-+.+-+|+.........+.   
T Consensus       171 ~-----~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---  236 (993)
T KOG1983|consen  171 L-----SIEGLVI--DLDTVLISLPDAY--LGLSLIEYESLQVLYYSPTK--ILIGFNRGLVVIKDRASKYVQSAYL---  236 (993)
T ss_pred             e-----eeecccc--ccccceeeccccc--ccccccccccceeeeecCCC--cceeeeeeeeeehhcccccchhhcc---
Confidence            0     0000000  1111111111111  22333445555555554444  2334445566666655433222221   


Q ss_pred             cCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccc
Q psy17342        356 EGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIA  393 (401)
Q Consensus       356 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~  393 (401)
                           +....+++++..++++..||.+..||+..+.++
T Consensus       237 -----~~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~~  269 (993)
T KOG1983|consen  237 -----PNGQLESRDGSHFVSYHTDGSYAFWDVSSGKLQ  269 (993)
T ss_pred             -----cccccCccCCceEEEEEecCCEEeeecCCCcee
Confidence                 111122788999999999999999999987543

>KOG1916|consensus

Probab=92.34  E-value=0.072  Score=50.69  Aligned_cols=98  Identities=15%  Similarity=0.201  Sum_probs=65.8

Q ss_pred             CcEEEEEeCcC--CCCCceEEEec----CCCeeEEEEeCC--CCceEEEEecCCeEEEEECCCCCCCceeeccccccCCC
Q psy17342         96 DGVCLIWNTKF--KKTTPEFEFFC----QSPVLSCCFAKF--NPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHT  167 (401)
Q Consensus        96 d~~v~iwd~~~--~~~~~~~~~~~----~~~v~~~~~~~~--~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  167 (401)
                      -|.+.||+++-  |+..+.+..+-    ...+.-+.|.|.  ++.++..+..++++++.+++.....       -+.+|.
T Consensus       152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~-------l~rsHs  224 (1283)
T KOG1916|consen  152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRS-------LFRSHS  224 (1283)
T ss_pred             hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHH-------HHHhcC
Confidence            36778898763  55555555431    234455666653  2357888888899999888765431       124476


Q ss_pred             CcEEEEEEe---------ecCCceEEEEEeCCCcEEEeeccC
Q psy17342        168 HPVFCMSVI---------GTQNAHNLISISNDGRLCSWSLEM  200 (401)
Q Consensus       168 ~~v~~~~~~---------~~~~~~~l~s~~~dg~i~~wd~~~  200 (401)
                      ..+..+++.         -+|||..|+.++.||.+++|.+.-
T Consensus       225 ~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi  266 (1283)
T KOG1916|consen  225 QRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI  266 (1283)
T ss_pred             CCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence            666555432         278999999999999999998764

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.33  E-value=6.2  Score=33.39  Aligned_cols=239  Identities=11%  Similarity=0.086  Sum_probs=121.6

Q ss_pred             CeeEEEEeCCCCceEEEEecCCeEEEEECCCCCC----Cc-eeeccccc-cCCCCcEEEEEEee------cC----CceE
Q psy17342        120 PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKK----TP-VHRTPLSV-MAHTHPVFCMSVIG------TQ----NAHN  183 (401)
Q Consensus       120 ~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~----~~-~~~~~~~~-~~~~~~v~~~~~~~------~~----~~~~  183 (401)
                      .-..|+++|.+ .+-++....+...+||......    .+ ....+..- .......+.+.|..      ..    ....
T Consensus        24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            35679999977 4555555678899999872211    01 11111000 01223456666621      11    1234


Q ss_pred             EEEEeCCCcEEEeeccCCCCC--ccccccccccccCCccce-EEEEecc-CCCCeEEE-EcCCceEEEEeCCCCCCCcee
Q psy17342        184 LISISNDGRLCSWSLEMLSSP--QETRDLQYNNKQTKNLAV-LSLAFPQ-NDVNNFVV-GCEDGNVYSACRHGNKAGNVE  258 (401)
Q Consensus       184 l~s~~~dg~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~v-~~~~~~~-~~~~~l~~-~~~d~~i~~~~~~~~~~~~~~  258 (401)
                      ++.+++||+|.-|........  .....+..    +....| ..+++.. ..+.+|.. --.+++|.++|-.-.+...-.
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~----s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g  178 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDA----SQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPG  178 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEcc----CCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCC
Confidence            788999999999986431110  11111111    111222 3344431 22344443 346788888876533211101


Q ss_pred             eecCCCCceeeeecCccCCCCCCCcEEEE-------------EeCCCeEEEEEeeCCCceEEEee--cCCceEEEEECCC
Q psy17342        259 CYEGHEGPVVGLSSHRAQGHIDFSHLYLT-------------SSYDWSVKLWNIKENKPVHSFNE--FRDYVMDVQWSPI  323 (401)
Q Consensus       259 ~~~~~~~~v~~i~~~~~~~~~~~~~~l~s-------------~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~  323 (401)
                      .+.   .+-.-..+.|.+-..-.++++++             |..-|.|-+||.. ++.++++..  .-...+.|+..|.
T Consensus       179 ~F~---DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa  254 (336)
T TIGR03118       179 SFI---DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPE  254 (336)
T ss_pred             Ccc---CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChh
Confidence            111   11001122221100000233333             2234689999974 778887743  2334567777663


Q ss_pred             ------CCcEEEEEecCCEEEEEeCCCCCCCcceEEeecC---CCCeEEEEecC
Q psy17342        324 ------NPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG---APALSRVTWTP  368 (401)
Q Consensus       324 ------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~s~  368 (401)
                            +. +|+.--.||+|..||..+++.+..+....++   ...++.+.|-.
T Consensus       255 ~FG~~sg~-lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       255 SFGSLSGA-LLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             hhCCCCCC-eEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence                  44 6776667999999999988766555432222   24578888865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.31  E-value=0.68  Score=25.37  Aligned_cols=32  Identities=19%  Similarity=0.301  Sum_probs=22.2

Q ss_pred             eecCCceEEEEECCCCCcEEEEEecC--CEEEEE
Q psy17342        309 NEFRDYVMDVQWSPINPALFATVEVA--GRVDLW  340 (401)
Q Consensus       309 ~~~~~~v~~v~~~~~~~~~l~~~~~d--~~i~iw  340 (401)
                      ......-....|+|+|+.++.++..+  |...||
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            33455677899999999777777777  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG2377|consensus

Probab=92.27  E-value=8.1  Score=34.58  Aligned_cols=151  Identities=7%  Similarity=0.065  Sum_probs=89.8

Q ss_pred             CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceee
Q psy17342        180 NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVEC  259 (401)
Q Consensus       180 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~  259 (401)
                      |.+..+.+...|.+.-|.....+ +.....+    .....++|.++.|+ +|.+.+++--.+..|.+++..+........
T Consensus        32 DaNkqlfavrSggatgvvvkgpn-dDVpiSf----dm~d~G~I~SIkFS-lDnkilAVQR~~~~v~f~nf~~d~~~l~~~  105 (657)
T KOG2377|consen   32 DANKQLFAVRSGGATGVVVKGPN-DDVPISF----DMDDKGEIKSIKFS-LDNKILAVQRTSKTVDFCNFIPDNSQLEYT  105 (657)
T ss_pred             cCcceEEEEecCCeeEEEEeCCC-CCCCcee----eecCCCceeEEEec-cCcceEEEEecCceEEEEecCCCchhhHHH
Confidence            33344444455666667665422 2111111    12245699999999 899999999999999999986544332222


Q ss_pred             e--cCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC-CCceEEEeecCCceEEEEECCCCCcEEEEEe-cCC
Q psy17342        260 Y--EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE-NKPVHSFNEFRDYVMDVQWSPINPALFATVE-VAG  335 (401)
Q Consensus       260 ~--~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~-~d~  335 (401)
                      .  +.....|....|..+       .-+|.-. +.-+-+|-... .+.++..+.|+-.|+--.|.|+..-.+.+.+ ..+
T Consensus       106 ~~ck~k~~~IlGF~W~~s-------~e~A~i~-~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n  177 (657)
T KOG2377|consen  106 QECKTKNANILGFCWTSS-------TEIAFIT-DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLEN  177 (657)
T ss_pred             HHhccCcceeEEEEEecC-------eeEEEEe-cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccccc
Confidence            2  233445788888765       3444444 33466666543 3344455667778888888888764444444 344


Q ss_pred             EEEEEeCCC
Q psy17342        336 RVDLWNLNL  344 (401)
Q Consensus       336 ~i~iwd~~~  344 (401)
                      .+.=+.+++
T Consensus       178 ~lnpf~~~~  186 (657)
T KOG2377|consen  178 VLNPFHFRA  186 (657)
T ss_pred             ccccEEEee
Confidence            444444443

>KOG2280|consensus

Probab=92.22  E-value=11  Score=36.04  Aligned_cols=203  Identities=10%  Similarity=0.087  Sum_probs=102.6

Q ss_pred             CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEE
Q psy17342         96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV  175 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  175 (401)
                      ...|+||+.. |..+.+....|. .+..+.|+.+. .++ +-..+|++++|++-....... .  +-.......|..+.+
T Consensus        63 ~~~I~If~~s-G~lL~~~~w~~~-~lI~mgWs~~e-eLI-~v~k~g~v~Vy~~~ge~ie~~-s--vg~e~~~~~I~ec~~  135 (829)
T KOG2280|consen   63 RPYIRIFNIS-GQLLGRILWKHG-ELIGMGWSDDE-ELI-CVQKDGTVHVYGLLGEFIESN-S--VGFESQMSDIVECRF  135 (829)
T ss_pred             ceeEEEEecc-ccchHHHHhcCC-CeeeecccCCc-eEE-EEeccceEEEeecchhhhccc-c--cccccccCceeEEEE
Confidence            4679999987 666666555544 78899999855 344 446899999999875443211 0  111222334555554


Q ss_pred             eecCCceEEEEEeCCCcEEEe-eccCCCCCccccccccccccCCccceEEEEeccCC-CCeEEEEc--CCceEEEEeCCC
Q psy17342        176 IGTQNAHNLISISNDGRLCSW-SLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQND-VNNFVVGC--EDGNVYSACRHG  251 (401)
Q Consensus       176 ~~~~~~~~l~s~~~dg~i~~w-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~--~d~~i~~~~~~~  251 (401)
                        ..+|-.+++  .+|.+.+- +... .........+.     ...+..|-...++. ...++..-  ..+. .++....
T Consensus       136 --f~~GVavlt--~~g~v~~i~~~~~-~~~~~~~diP~-----~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~-~~~q~~~  204 (829)
T KOG2280|consen  136 --FHNGVAVLT--VSGQVILINGVEE-PKLRKMPDIPY-----NELPKSCWTVFQPHRQSTILLDVDVAVGL-HICQVEE  204 (829)
T ss_pred             --ecCceEEEe--cCCcEEEEcCCCc-chhhhCCCCCC-----ccCCCcceeEecCCCcceeEEeechhhhh-cccceec
Confidence              335533333  44444433 2221 01111111111     11111222222121 11111111  1110 1111111


Q ss_pred             CCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee--cCCceEEEEECCCC
Q psy17342        252 NKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE--FRDYVMDVQWSPIN  324 (401)
Q Consensus       252 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~  324 (401)
                      ... ....+......+..+.++|+      .++|+--...|.|.+-+....+...++..  |.. ...++|..+.
T Consensus       205 ~~~-q~~~~~~~~~~~~ki~VS~n------~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~-p~qm~Wcgnd  271 (829)
T KOG2280|consen  205 SRV-QLHALSWPNSSVVKISVSPN------RRFLALYTETGKIWVVSIDLSQILCEFNCTDHDP-PKQMAWCGND  271 (829)
T ss_pred             ccc-cccccCCCCceEEEEEEcCC------cceEEEEecCCcEEEEecchhhhhhccCCCCCCc-hHhceeecCC
Confidence            111 11222222456778889988      68888888899999998888887777763  322 2256666544

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.06  E-value=2.3  Score=33.10  Aligned_cols=30  Identities=20%  Similarity=0.539  Sum_probs=25.9

Q ss_pred             CeEEEEecCCC------cEEEEEecCCcEEEEEecc
Q psy17342        360 ALSRVTWTPNG------TQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       360 ~v~~~~~s~~g------~~l~~~~~dg~v~iw~~~~  389 (401)
                      .+.+++|||-|      .+|++-+.+|.|.||.-..
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            68899999954      5789999999999999774

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.75  E-value=1.3  Score=35.98  Aligned_cols=69  Identities=14%  Similarity=0.253  Sum_probs=48.2

Q ss_pred             ECCCCCcEEEEEecCCEEEEEeCCCCCCCcce----EEee-------cCCCCeEEEEecCCCcEEEEEecCCcEEEEEec
Q psy17342        320 WSPINPALFATVEVAGRVDLWNLNLDTEVPAT----SAIV-------EGAPALSRVTWTPNGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       320 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~-------~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~  388 (401)
                      +...+. ++++.+.+|.+++||+.+.+.+...    ....       .....|..+.++.+|.-|++-+ +|..+.|+..
T Consensus        18 l~~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            344565 5777788999999999987643221    0001       2456789999998998776654 5789999987


Q ss_pred             cC
Q psy17342        389 EV  390 (401)
Q Consensus       389 ~~  390 (401)
                      -+
T Consensus        96 L~   97 (219)
T PF07569_consen   96 LG   97 (219)
T ss_pred             cc
Confidence            65

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK10115 protease 2; Provisional

Probab=91.73  E-value=14  Score=36.15  Aligned_cols=250  Identities=10%  Similarity=0.049  Sum_probs=116.0

Q ss_pred             CeeEEEEeCCCCceEEEEecCC----eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC-----
Q psy17342        120 PVLSCCFAKFNPYLILGGTYSG----QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND-----  190 (401)
Q Consensus       120 ~v~~~~~~~~~~~~l~~g~~dg----~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----  190 (401)
                      .+..+.|+|++..++++.+.+|    .|++.|+.++...+.     .+..   .-..++|  .++++.|+....+     
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-----~i~~---~~~~~~w--~~D~~~~~y~~~~~~~~~  197 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-----LLDN---VEPSFVW--ANDSWTFYYVRKHPVTLL  197 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-----cccC---cceEEEE--eeCCCEEEEEEecCCCCC
Confidence            4667889998854444433333    588889987653211     0111   1145888  7777766655442     


Q ss_pred             -CcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC---CceEEEEeCCCCCCCceeeecCCCCc
Q psy17342        191 -GRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE---DGNVYSACRHGNKAGNVECYEGHEGP  266 (401)
Q Consensus       191 -g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~~~~~~~~~~~~~~~~~~~~~~  266 (401)
                       ..|..+++.+.... .......     ......-..+.+.++.+++..+.   ++.+.+++...........+....+.
T Consensus       198 ~~~v~~h~lgt~~~~-d~lv~~e-----~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  271 (686)
T PRK10115        198 PYQVWRHTIGTPASQ-DELVYEE-----KDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDH  271 (686)
T ss_pred             CCEEEEEECCCChhH-CeEEEee-----CCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCC
Confidence             24566666542111 1111111     11122212233247776655433   34688887532222222222211222


Q ss_pred             eeeeecCccCCCCCCCcEEEEEeCC---CeEEEEEeeCCCceEEEeec-C-CceEEEEECCCCCcEEEEEecCCEEEEEe
Q psy17342        267 VVGLSSHRAQGHIDFSHLYLTSSYD---WSVKLWNIKENKPVHSFNEF-R-DYVMDVQWSPINPALFATVEVAGRVDLWN  341 (401)
Q Consensus       267 v~~i~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~-~-~~v~~v~~~~~~~~~l~~~~~d~~i~iwd  341 (401)
                      ...+. +..      ..+++....+   ..|...++........+..+ . ..+..+.+..+  .++++...++.-+++-
T Consensus       272 ~~~~~-~~~------~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~--~l~~~~~~~g~~~l~~  342 (686)
T PRK10115        272 EYSLD-HYQ------HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD--WLVVEERQRGLTSLRQ  342 (686)
T ss_pred             EEEEE-eCC------CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC--EEEEEEEeCCEEEEEE
Confidence            22222 221      2333333322   23433444421222334344 2 36778888733  5788888888766665


Q ss_pred             CCCC-CCCcceEEeecCCCCeEEEEec--CCCc-EEEEEec---CCcEEEEEeccCccceee
Q psy17342        342 LNLD-TEVPATSAIVEGAPALSRVTWT--PNGT-QLCVGDE---KGAITMFDVGEVGIACLK  396 (401)
Q Consensus       342 ~~~~-~~~~~~~~~~~~~~~v~~~~~s--~~g~-~l~~~~~---dg~v~iw~~~~~~~~~l~  396 (401)
                      +... .....+  .......+..+.++  +++. ++++.++   -+.++.+|+.+++.+.++
T Consensus       343 ~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~  402 (686)
T PRK10115        343 INRKTREVIGI--AFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLK  402 (686)
T ss_pred             EcCCCCceEEe--cCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence            5432 222111  11212223334444  3433 4443332   367888888876544443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.64  E-value=1.6  Score=35.43  Aligned_cols=69  Identities=17%  Similarity=0.231  Sum_probs=45.1

Q ss_pred             CCceEEEEEeCCCcEEEeeccCCCCCcccccccccccc-------CCccceEEEEeccCCCCeEEEEcCCceEEEEeCC
Q psy17342        179 QNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQ-------TKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRH  250 (401)
Q Consensus       179 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~  250 (401)
                      ..+.++++.+.+|.+++||+...........+.+- ..       .....|..+.++ .+|.-+++- .+|..+.|+..
T Consensus        20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pl-l~~~~~~~~~~~~~i~~~~lt-~~G~PiV~l-sng~~y~y~~~   95 (219)
T PF07569_consen   20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPL-LNSSPVSDKSSSPNITSCSLT-SNGVPIVTL-SNGDSYSYSPD   95 (219)
T ss_pred             eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHH-hcccccccCCCCCcEEEEEEc-CCCCEEEEE-eCCCEEEeccc
Confidence            47788999999999999999874332222121110 11       355678888888 666665554 45778888765

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=91.53  E-value=7.8  Score=32.83  Aligned_cols=239  Identities=13%  Similarity=0.083  Sum_probs=125.5

Q ss_pred             eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCC----CCCc-eEEEe------cCCCeeEEEEeCCC------
Q psy17342         68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK----KTTP-EFEFF------CQSPVLSCCFAKFN------  130 (401)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~----~~~~-~~~~~------~~~~v~~~~~~~~~------  130 (401)
                      -+.|+|+|.+..-++..          ..+...+||....    ...+ .....      .....+.+.|+...      
T Consensus        25 ~WGia~~p~~~~WVadn----------gT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~   94 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANT----------GTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSG   94 (336)
T ss_pred             cceeEecCCCCEEEecC----------CcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcC
Confidence            57799999986655555          6889999998611    1111 11211      13467788887422      


Q ss_pred             -----CceEEEEecCCeEEEEECCCCCCCceeeccccc-cCCCCcE-EEEEEeecCCceEEEEE-eCCCcEEEeeccCCC
Q psy17342        131 -----PYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSV-MAHTHPV-FCMSVIGTQNAHNLISI-SNDGRLCSWSLEMLS  202 (401)
Q Consensus       131 -----~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~~~v-~~~~~~~~~~~~~l~s~-~~dg~i~~wd~~~~~  202 (401)
                           ...++.+++||+|.-|...-......... +.+ ....+.| ..+++.....+.+|..+ -..++|.++|-.-..
T Consensus        95 ~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~-~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~  173 (336)
T TIGR03118        95 EGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAE-IVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP  173 (336)
T ss_pred             CCcccceeEEEEeCCceEEeecCcCCcccccccE-EEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc
Confidence                 12345667999999998644332100000 111 1112333 34555323334555544 457889999864311


Q ss_pred             CCccccccccccc-----------cCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec--CCCCceee
Q psy17342        203 SPQETRDLQYNNK-----------QTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE--GHEGPVVG  269 (401)
Q Consensus       203 ~~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~--~~~~~v~~  269 (401)
                       ....-.......           .+..--|+-..-. ++...=+.|..-|.|-+||..+.   .++.+.  +.-..-..
T Consensus       174 -~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd-~~~~d~v~G~G~G~VdvFd~~G~---l~~r~as~g~LNaPWG  248 (336)
T TIGR03118       174 -PPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQD-ADRNDEVAGAGLGYVNVFTLNGQ---LLRRVASSGRLNAPWG  248 (336)
T ss_pred             -ccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecC-CcccccccCCCcceEEEEcCCCc---EEEEeccCCcccCCce
Confidence             000000000000           0001111111112 22233344555678999998754   455553  23344566


Q ss_pred             eecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC------CceEEEEECC
Q psy17342        270 LSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR------DYVMDVQWSP  322 (401)
Q Consensus       270 i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~v~~v~~~~  322 (401)
                      |+..|...-..-+.+|+---.||+|..||..+++.+-.+....      ..++.++|-.
T Consensus       249 ~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       249 LAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             eeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            7777654222214566655569999999999888777776533      2467788765

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=91.30  E-value=8.7  Score=32.96  Aligned_cols=276  Identities=11%  Similarity=0.075  Sum_probs=119.8

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeC-cCCCCCceEEEecC----CCeeEEEEeCCCCceEEEEec
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNT-KFKKTTPEFEFFCQ----SPVLSCCFAKFNPYLILGGTY  139 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~-~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~g~~  139 (401)
                      ...+.+|.|.....-.+++.           .+.|  +.. +.++.-........    -...++.|..  ...+++| .
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~-----------~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG-~   79 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGA-----------YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVG-E   79 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEET-----------TTEE--EEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEE-E
T ss_pred             CCceEEEEEecCCEEEEEec-----------CCEE--EEECCCCccccccccCCCccceeeEEEEEecC--CceEEEc-C
Confidence            36799999995555555554           5543  333 32333222222211    2366788764  3456665 4


Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                      .+ +.+...+.+..=..  .++. ..-.+....+..  ..++..++. +..|.  +|.....+..=+...      ....
T Consensus        80 ~g-~ll~T~DgG~tW~~--v~l~-~~lpgs~~~i~~--l~~~~~~l~-~~~G~--iy~T~DgG~tW~~~~------~~~~  144 (302)
T PF14870_consen   80 PG-LLLHTTDGGKTWER--VPLS-SKLPGSPFGITA--LGDGSAELA-GDRGA--IYRTTDGGKTWQAVV------SETS  144 (302)
T ss_dssp             TT-EEEEESSTTSS-EE-------TT-SS-EEEEEE--EETTEEEEE-ETT----EEEESSTTSSEEEEE-------S--
T ss_pred             Cc-eEEEecCCCCCcEE--eecC-CCCCCCeeEEEE--cCCCcEEEE-cCCCc--EEEeCCCCCCeeEcc------cCCc
Confidence            45 33444444332111  0010 011223333433  223333333 34444  343333222211111      1134


Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      ..+..+.-+ +++.+++++.......-|+.-...-  ...-..-...|.++.|.|+      +.+.+.+ ..|.|+.=+.
T Consensus       145 gs~~~~~r~-~dG~~vavs~~G~~~~s~~~G~~~w--~~~~r~~~~riq~~gf~~~------~~lw~~~-~Gg~~~~s~~  214 (302)
T PF14870_consen  145 GSINDITRS-SDGRYVAVSSRGNFYSSWDPGQTTW--QPHNRNSSRRIQSMGFSPD------GNLWMLA-RGGQIQFSDD  214 (302)
T ss_dssp             --EEEEEE--TTS-EEEEETTSSEEEEE-TT-SS---EEEE--SSS-EEEEEE-TT------S-EEEEE-TTTEEEEEE-
T ss_pred             ceeEeEEEC-CCCcEEEEECcccEEEEecCCCccc--eEEccCccceehhceecCC------CCEEEEe-CCcEEEEccC
Confidence            567788777 8899888887666666777542221  1122234578999999998      4555544 7888888762


Q ss_pred             eC-C----CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEE
Q psy17342        300 KE-N----KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLC  374 (401)
Q Consensus       300 ~~-~----~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  374 (401)
                      .. .    +++..+....-.+..++|.+++. +.++|+ .|.+. .....++.-........-...++.+.|.++.+-++
T Consensus       215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~  291 (302)
T PF14870_consen  215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV  291 (302)
T ss_dssp             TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE
T ss_pred             CCCccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEE
Confidence            11 1    11111111223478999999986 677665 55443 33333332111100011234578899986655555


Q ss_pred             EEecCCcEEEE
Q psy17342        375 VGDEKGAITMF  385 (401)
Q Consensus       375 ~~~~dg~v~iw  385 (401)
                       -+.+|.|.-|
T Consensus       292 -lG~~G~ll~~  301 (302)
T PF14870_consen  292 -LGQDGVLLRY  301 (302)
T ss_dssp             -E-STTEEEEE
T ss_pred             -ECCCcEEEEe
Confidence             4557776554

>KOG1900|consensus

Probab=90.98  E-value=4.2  Score=41.26  Aligned_cols=165  Identities=10%  Similarity=0.175  Sum_probs=89.6

Q ss_pred             eeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeec------CCceEEEEEeCCCcEE
Q psy17342        121 VLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGT------QNAHNLISISNDGRLC  194 (401)
Q Consensus       121 v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~~l~s~~~dg~i~  194 (401)
                      -+.+-+.|.=.+.-++  .|+.+.+|+++++.....      +.+-...|..+.....      +.=.+++..+.--.|.
T Consensus        81 ~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~------~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~  152 (1311)
T KOG1900|consen   81 KTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAE------YDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIV  152 (1311)
T ss_pred             eeeeccchhhcceEEE--eCCeEEEEEcCCCCcccc------ccchhhhheeeeeecCCCCcchhhhheeEEecccceEE
Confidence            3444455533233333  578999999998554322      3455566766665321      2223444444444566


Q ss_pred             EeeccCCCCCccccccccc-cccCCccceEEEEeccCCCCeEEEEcCCceEEE--EeCCC-------CCC----------
Q psy17342        195 SWSLEMLSSPQETRDLQYN-NKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYS--ACRHG-------NKA----------  254 (401)
Q Consensus       195 ~wd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~--~~~~~-------~~~----------  254 (401)
                      ++-+.....+.....+... ........|.|+... .+|+.+++| .||.++-  |....       .+.          
T Consensus       153 ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t-~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~l  230 (1311)
T KOG1900|consen  153 ILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYT-ENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSL  230 (1311)
T ss_pred             EEEEEeccccCcccccccceeeecCCceEEEEEec-cCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHh
Confidence            6654332211111111100 011245678888866 666666655 4555542  22111       000          


Q ss_pred             -Cceeeec-CCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342        255 -GNVECYE-GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE  301 (401)
Q Consensus       255 -~~~~~~~-~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  301 (401)
                       +.+..+. .+..+|..+.+...      ...+.+-+..++|.+||+..
T Consensus       231 vPs~~~~~~~~~dpI~qi~ID~S------R~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  231 VPSLLSVPGSSKDPIRQITIDNS------RNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hhhhhcCCCCCCCcceeeEeccc------cceeeeeccCceEEEEEccC
Confidence             0011223 56779999999887      68899999999999999976

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=90.90  E-value=18  Score=35.86  Aligned_cols=197  Identities=12%  Similarity=0.125  Sum_probs=102.6

Q ss_pred             EEEEecCCeEEEEECCCCCCCceee-ccc-cccCCCCcEEEEEEeecCCceEEEEEeCC---CcEEEeeccCCCC--Cc-
Q psy17342        134 ILGGTYSGQIVLWDTRVQKKTPVHR-TPL-SVMAHTHPVFCMSVIGTQNAHNLISISND---GRLCSWSLEMLSS--PQ-  205 (401)
Q Consensus       134 l~~g~~dg~v~iw~~~~~~~~~~~~-~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~--~~-  205 (401)
                      +++-..+|.+++|-.+......... ..+ .+..-...|+..++.+..+|..++.++.+   +.|++|.+.-...  +. 
T Consensus        65 ~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~  144 (753)
T PF11635_consen   65 CIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQ  144 (753)
T ss_pred             EEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCcc
Confidence            3334578999999873322211111 000 12234456666666546677655555554   7888876532111  00 


Q ss_pred             ------cccccccccc---c-------------CCccceEEEEecc----C--CCCeEEEEcC----CceEEEEeCCCCC
Q psy17342        206 ------ETRDLQYNNK---Q-------------TKNLAVLSLAFPQ----N--DVNNFVVGCE----DGNVYSACRHGNK  253 (401)
Q Consensus       206 ------~~~~~~~~~~---~-------------~~~~~v~~~~~~~----~--~~~~l~~~~~----d~~i~~~~~~~~~  253 (401)
                            ..+.+.....   .             ..-..++.+.|-+    .  ....+++.+.    ...|..|.++...
T Consensus       145 ~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~  224 (753)
T PF11635_consen  145 IDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQ  224 (753)
T ss_pred             CCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccC
Confidence                  1111111000   0             0224666777764    1  1223433322    3468889876532


Q ss_pred             CCceee-ec------------------------CCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEE
Q psy17342        254 AGNVEC-YE------------------------GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSF  308 (401)
Q Consensus       254 ~~~~~~-~~------------------------~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  308 (401)
                      . .++. |.                        ...+.|.++.....      +.+++..-.||+|.++|..+.+.+...
T Consensus       225 ~-~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~------~~~v~~~~~DGsI~~~dr~t~~~~~~~  297 (753)
T PF11635_consen  225 Q-PLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPEL------DIVVAFAFSDGSIEFRDRNTMKELNET  297 (753)
T ss_pred             c-ccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEeccc------CcEEEEEEcCCeEEEEecCcchhhccc
Confidence            1 1111 10                        01234556665554      578888899999999998776554433


Q ss_pred             ----ee---------------cCCceEEEEECCCCCcEEEEEecCCEEE
Q psy17342        309 ----NE---------------FRDYVMDVQWSPINPALFATVEVAGRVD  338 (401)
Q Consensus       309 ----~~---------------~~~~v~~v~~~~~~~~~l~~~~~d~~i~  338 (401)
                          ..               .-..+..++|||.+- .++.-..+|.+.
T Consensus       298 ~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c-~~v~~~~~~~~~  345 (753)
T PF11635_consen  298 RTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMC-SLVQIDEDGKTK  345 (753)
T ss_pred             ccccCCccccccccccccccccCCCCceEEECcccc-eEEEEecCCCce
Confidence                11               011233578999986 567777777755

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=90.72  E-value=11  Score=33.29  Aligned_cols=199  Identities=9%  Similarity=0.099  Sum_probs=105.8

Q ss_pred             cCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccc-eEEEEeccCCCCeEEEEcC-C---ceEEEEeCCCC
Q psy17342        178 TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA-VLSLAFPQNDVNNFVVGCE-D---GNVYSACRHGN  252 (401)
Q Consensus       178 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~-d---~~i~~~~~~~~  252 (401)
                      .|...+++....++-+.+||+.-  +..+......    ..... ...+.+. ....-|++++. +   ..|++|.+...
T Consensus        65 dp~kSlIigTdK~~GL~VYdL~G--k~lq~~~~Gr----~NNVDvrygf~l~-g~~vDlavas~R~~g~n~l~~f~id~~  137 (381)
T PF02333_consen   65 DPAKSLIIGTDKKGGLYVYDLDG--KELQSLPVGR----PNNVDVRYGFPLN-GKTVDLAVASDRSDGRNSLRLFRIDPD  137 (381)
T ss_dssp             -GGG-EEEEEETTTEEEEEETTS---EEEEE-SS-----EEEEEEEEEEEET-TEEEEEEEEEE-CCCT-EEEEEEEETT
T ss_pred             CcccceEEEEeCCCCEEEEcCCC--cEEEeecCCC----cceeeeecceecC-CceEEEEEEecCcCCCCeEEEEEecCC
Confidence            35566888888889999999973  2222221110    01111 1222222 11111444443 2   46888877643


Q ss_pred             CCCceeeecC-------CCCceeeeecC--ccCCCCCCCcEEEEEeCCCeEEEEEeeC---C----CceEEEeecCCceE
Q psy17342        253 KAGNVECYEG-------HEGPVVGLSSH--RAQGHIDFSHLYLTSSYDWSVKLWNIKE---N----KPVHSFNEFRDYVM  316 (401)
Q Consensus       253 ~~~~~~~~~~-------~~~~v~~i~~~--~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~----~~~~~~~~~~~~v~  316 (401)
                      .. .+..+..       ....++.+++.  |..+    .-+++....+|.+..|.+..   +    +++++|.. ...+-
T Consensus       138 ~g-~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g----~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~E  211 (381)
T PF02333_consen  138 TG-ELTDVTDPAAPIATDLSEPYGLCLYRSPSTG----ALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPE  211 (381)
T ss_dssp             TT-EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT------EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EE
T ss_pred             CC-cceEcCCCCcccccccccceeeEEeecCCCC----cEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcce
Confidence            32 2222221       11235666653  3321    24666677899998888852   2    35777776 55788


Q ss_pred             EEEECCCCCcEEEEEecCCEEEEEeCCCCCCC-cceEEeecC---CCCeEEEEec--CCC--cEEEEEecCCcEEEEEec
Q psy17342        317 DVQWSPINPALFATVEVAGRVDLWNLNLDTEV-PATSAIVEG---APALSRVTWT--PNG--TQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       317 ~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~---~~~v~~~~~s--~~g--~~l~~~~~dg~v~iw~~~  388 (401)
                      .|....... .|+.+-++.-|.-|+.+..... ..+-.....   ...|-.++.-  +++  .+|++.-.+++..||+.+
T Consensus       212 GCVVDDe~g-~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~  290 (381)
T PF02333_consen  212 GCVVDDETG-RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDRE  290 (381)
T ss_dssp             EEEEETTTT-EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESS
T ss_pred             EEEEecccC-CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecC
Confidence            888888776 6778888877877877643322 222111111   2456677764  333  345555567789999987


Q ss_pred             cC
Q psy17342        389 EV  390 (401)
Q Consensus       389 ~~  390 (401)
                      ..
T Consensus       291 ~~  292 (381)
T PF02333_consen  291 GP  292 (381)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.69  E-value=1.2  Score=42.07  Aligned_cols=78  Identities=17%  Similarity=0.334  Sum_probs=43.7

Q ss_pred             CCCCeEEEEcCCceEEEEeCCC---CCCCceee-ec--------------------CCCCceeeeecCccCCCCCCCcEE
Q psy17342        230 NDVNNFVVGCEDGNVYSACRHG---NKAGNVEC-YE--------------------GHEGPVVGLSSHRAQGHIDFSHLY  285 (401)
Q Consensus       230 ~~~~~l~~~~~d~~i~~~~~~~---~~~~~~~~-~~--------------------~~~~~v~~i~~~~~~~~~~~~~~l  285 (401)
                      .+...++++..||.+.......   ........ +.                    ........+++++..  .+...++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l  233 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSE--INDDTFL  233 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-------ETTTEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecce--eCCCCEE
Confidence            3678888999999988776553   11100000 00                    011234445555410  0005789


Q ss_pred             EEEeCCCeEEEEEeeCCCceEEEe
Q psy17342        286 LTSSYDWSVKLWNIKENKPVHSFN  309 (401)
Q Consensus       286 ~s~~~d~~i~iwd~~~~~~~~~~~  309 (401)
                      ++.+.|+++|+||+.+++++.+..
T Consensus       234 ~tl~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  234 FTLSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EEEETTSEEEEEETTTTCEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCeEEEEec
Confidence            999999999999999999866653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1900|consensus

Probab=90.65  E-value=9.7  Score=38.87  Aligned_cols=152  Identities=16%  Similarity=0.239  Sum_probs=87.2

Q ss_pred             cCCceEEEEeCCCCCCCceeeecCCCCceeeeecC---ccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc---------eE
Q psy17342        239 CEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSH---RAQGHIDFSHLYLTSSYDWSVKLWNIKENKP---------VH  306 (401)
Q Consensus       239 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~---~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---------~~  306 (401)
                      +.|+.+++|+.+...  ....+.+-...|..+..-   |.-+.+....+|+.+. --.|.++-+.-.+.         ..
T Consensus        96 TiDn~L~lWny~~~~--e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f~~~~  172 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDN--ELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELSIFNTSF  172 (1311)
T ss_pred             EeCCeEEEEEcCCCC--ccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCcccccccce
Confidence            568899999998532  244444444455544322   2111122123344333 55666665532111         11


Q ss_pred             EEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCC--CC-----C--------------CCcce-EEeecCCCCeEEE
Q psy17342        307 SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN--LD-----T--------------EVPAT-SAIVEGAPALSRV  364 (401)
Q Consensus       307 ~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~--~~-----~--------------~~~~~-~~~~~~~~~v~~~  364 (401)
                      ++....-.|+++....+|+ +|.+| .||  .+|.+.  ..     +              .++.+ ..+..+..+|..+
T Consensus       173 ~i~~dg~~V~~I~~t~nGR-IF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi  248 (1311)
T KOG1900|consen  173 KISVDGVSVNCITYTENGR-IFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQI  248 (1311)
T ss_pred             eeecCCceEEEEEeccCCc-EEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceee
Confidence            2222345688999888887 66665 566  444431  10     0              01221 1111345689999


Q ss_pred             EecCCCcEEEEEecCCcEEEEEeccCccceeee
Q psy17342        365 TWTPNGTQLCVGDEKGAITMFDVGEVGIACLKF  397 (401)
Q Consensus       365 ~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~  397 (401)
                      ........|.+-+..|+|.+|++...++.+.+.
T Consensus       249 ~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~  281 (1311)
T KOG1900|consen  249 TIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRF  281 (1311)
T ss_pred             EeccccceeeeeccCceEEEEEccCCCccceee
Confidence            999888999999999999999998866555443

>PLN02153 epithiospecifier protein

Probab=90.54  E-value=12  Score=33.05  Aligned_cols=59  Identities=8%  Similarity=0.042  Sum_probs=30.4

Q ss_pred             CEEEEEeCCCCCCCcceEE-eecC-CCCeEEEEecCCCcEEEEEecC--------------CcEEEEEeccCcccee
Q psy17342        335 GRVDLWNLNLDTEVPATSA-IVEG-APALSRVTWTPNGTQLCVGDEK--------------GAITMFDVGEVGIACL  395 (401)
Q Consensus       335 ~~i~iwd~~~~~~~~~~~~-~~~~-~~~v~~~~~s~~g~~l~~~~~d--------------g~v~iw~~~~~~~~~l  395 (401)
                      ..+.+||+.+.+-...... ..+. ......+  ..++++++.|+..              ..|..+|+.+.....+
T Consensus       217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~  291 (341)
T PLN02153        217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHA--VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKL  291 (341)
T ss_pred             CceEEEEcCCCcEEeccccCCCCCCcceeeeE--EECCEEEEECcccCCccccccccccccccEEEEEcCccEEEec
Confidence            4688899877543221100 0010 1111122  2356777777742              2578889887765444

>KOG1983|consensus

Probab=90.36  E-value=6.3  Score=40.09  Aligned_cols=30  Identities=10%  Similarity=0.217  Sum_probs=25.6

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCc
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTK  105 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~  105 (401)
                      .....++|+|....++.+.          ..|.|++|-..
T Consensus        36 ~~~~~~afD~~q~llai~t----------~tg~i~~yg~~   65 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGT----------RTGAIKIYGQP   65 (993)
T ss_pred             CCCcceeeccccceEEEEE----------ecccEEEeccc
Confidence            4567789999999999999          79999999765

>KOG1898|consensus

Probab=90.23  E-value=19  Score=35.97  Aligned_cols=166  Identities=11%  Similarity=0.040  Sum_probs=89.2

Q ss_pred             cceEEEEecCCCCC--eEEEEeccCCCCC-CCCCcEEEEEeCcCCCCCceEEEec--CCCeeEEEEeCCCCceEEEEecC
Q psy17342         66 RNVTYMDWSTQHPE--LLLASYHRNKEAP-NEPDGVCLIWNTKFKKTTPEFEFFC--QSPVLSCCFAKFNPYLILGGTYS  140 (401)
Q Consensus        66 ~~v~~~~~~~~~~~--l~~~~~~~~~~~~-~~~d~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~g~~d  140 (401)
                      -.|.++.|+.....  ++++.+....+-. .-.+|.++.|+.-.....-++....  .+.|.  +..|... .+.+| ..
T Consensus       878 ~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~~~~v~--Ai~~f~~-~~Lag-vG  953 (1205)
T KOG1898|consen  878 FSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEIPGPVG--AICPFQG-RVLAG-VG  953 (1205)
T ss_pred             hheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCCCccce--EEeccCC-EEEEe-cc
Confidence            34677777765443  3333322111110 0145667777765332222222221  33444  4455554 44444 45


Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      ..+++|++...+......    ++.-...|..+.+    .+..++.|...-.+.++..+........+.-     ..-..
T Consensus       954 ~~l~~YdlG~K~lLRk~e----~k~~p~~Is~iqt----~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad-----D~~pR 1020 (1205)
T KOG1898|consen  954 RFLRLYDLGKKKLLRKCE----LKFIPNRISSIQT----YGARIVVGDIQESVHFVRYRREDNQLIVFAD-----DPVPR 1020 (1205)
T ss_pred             cEEEEeeCChHHHHhhhh----hccCceEEEEEee----cceEEEEeeccceEEEEEEecCCCeEEEEeC-----CCccc
Confidence            789999998776543221    2234667888877    6677888776666766665532222111111     12344


Q ss_pred             ceEEEEeccCCCCeEEEEcCCceEEEEeCC
Q psy17342        221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRH  250 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~  250 (401)
                      .|+++.+.  |...++.+..-|.+.+..+.
T Consensus      1021 ~Vt~~~~l--D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1021 HVTALELL--DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             eeeEEEEe--cCCceeeccccCcEEEEECC
Confidence            56666665  66778888888887776553

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.83  E-value=3.3  Score=32.19  Aligned_cols=31  Identities=19%  Similarity=0.237  Sum_probs=25.1

Q ss_pred             CeeEEEEeCCC-----CceEEEEecCCeEEEEECCC
Q psy17342        120 PVLSCCFAKFN-----PYLILGGTYSGQIVLWDTRV  150 (401)
Q Consensus       120 ~v~~~~~~~~~-----~~~l~~g~~dg~v~iw~~~~  150 (401)
                      .+.+++|||.|     ..+|++-+.+|.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            78899999854     34888888999999998654

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4499|consensus

Probab=89.23  E-value=11  Score=30.68  Aligned_cols=94  Identities=12%  Similarity=0.057  Sum_probs=60.1

Q ss_pred             EEEEeccCCCCeE-EEEcCCceEEEEeCCCCCC-----CceeeecC---CCCc-eeeeecCccCCCCCCCcEEEEEeCCC
Q psy17342        223 LSLAFPQNDVNNF-VVGCEDGNVYSACRHGNKA-----GNVECYEG---HEGP-VVGLSSHRAQGHIDFSHLYLTSSYDW  292 (401)
Q Consensus       223 ~~~~~~~~~~~~l-~~~~~d~~i~~~~~~~~~~-----~~~~~~~~---~~~~-v~~i~~~~~~~~~~~~~~l~s~~~d~  292 (401)
                      ..++|+ .+.+.+ ++-+.+-.|.-||.+-..+     +.+..++.   .... --.+++...      +++++++-..+
T Consensus       161 Ngl~Wd-~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~e------G~L~Va~~ng~  233 (310)
T KOG4499|consen  161 NGLAWD-SDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTE------GNLYVATFNGG  233 (310)
T ss_pred             cccccc-ccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccC------CcEEEEEecCc
Confidence            467888 555554 4556677776676332111     11222211   0010 112333333      78888888899


Q ss_pred             eEEEEEeeCCCceEEEeecCCceEEEEECCC
Q psy17342        293 SVKLWNIKENKPVHSFNEFRDYVMDVQWSPI  323 (401)
Q Consensus       293 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~  323 (401)
                      +|...|..+|+.+.++.-....|++++|---
T Consensus       234 ~V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  234 TVQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             EEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence            9999999999999999988899999999754

>KOG2247|consensus

Probab=88.93  E-value=0.068  Score=47.28  Aligned_cols=145  Identities=12%  Similarity=0.202  Sum_probs=95.3

Q ss_pred             eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEE
Q psy17342         68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWD  147 (401)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~  147 (401)
                      -....|-|.+..++.++          .+..|..||-.. +..  .....++....++|..+++.+++.+-..+.+.+||
T Consensus        37 pi~~~w~~e~~nlavac----------a~tiv~~YD~ag-q~~--le~n~tg~aldm~wDkegdvlavlAek~~piylwd  103 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVAC----------ANTIVIYYDKAG-QVI--LELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWD  103 (615)
T ss_pred             cceeeEecCCCceehhh----------hhhHHHhhhhhc-cee--cccCCchhHhhhhhccccchhhhhhhcCCCeeech
Confidence            34456888888888887          688899999763 322  22334677788999888877777777889999999


Q ss_pred             CCCCCCCceeecccccc-CCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEE
Q psy17342        148 TRVQKKTPVHRTPLSVM-AHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLA  226 (401)
Q Consensus       148 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  226 (401)
                      +.+.....     +.+. .|....  +.|  ++....++.+...|.+.+++....   .......     .|...+++++
T Consensus       104 ~n~eytqq-----LE~gg~~s~sl--l~w--sKg~~el~ig~~~gn~viynhgts---R~iiv~G-----kh~RRgtq~a  166 (615)
T KOG2247|consen  104 VNSEYTQQ-----LESGGTSSKSL--LAW--SKGTPELVIGNNAGNIVIYNHGTS---RRIIVMG-----KHQRRGTQIA  166 (615)
T ss_pred             hhhhhHHH-----HhccCcchHHH--Hhh--ccCCccccccccccceEEEeccch---hhhhhhc-----ccccceeEEE
Confidence            98754321     1111 122222  566  888888888888999999987642   2222221     2777899999


Q ss_pred             eccCCCCeEEEEcCCceE
Q psy17342        227 FPQNDVNNFVVGCEDGNV  244 (401)
Q Consensus       227 ~~~~~~~~l~~~~~d~~i  244 (401)
                      +. +. .+.+.++.|..+
T Consensus       167 v~-lE-d~vil~dcd~~L  182 (615)
T KOG2247|consen  167 VT-LE-DYVILCDCDNTL  182 (615)
T ss_pred             ec-cc-ceeeecCcHHHH
Confidence            98 33 344444444443

>KOG1898|consensus

Probab=88.90  E-value=27  Score=35.03  Aligned_cols=98  Identities=12%  Similarity=0.140  Sum_probs=57.6

Q ss_pred             CCcEEEEEeCcCCCCCceEEE--ecCCCeeEEEEeCCC-----CceEEEEecCCeEEEEECCCCCCCceeeccccccCCC
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEF--FCQSPVLSCCFAKFN-----PYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHT  167 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~-----~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  167 (401)
                      ..|.+.-+.........++.-  .-...|.|+++.++.     .++++.|+.|+++++..+.......    +++.++-.
T Consensus       557 Sngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~----~ls~q~l~  632 (1205)
T KOG1898|consen  557 SNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQ----PLSVQGLS  632 (1205)
T ss_pred             cCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEE----EccccccC
Confidence            355555555433233333321  135678899988754     3589999999999999998544322    23445555


Q ss_pred             CcEEEEEEeecC-C------ceEEEEEeCCCcEEEe
Q psy17342        168 HPVFCMSVIGTQ-N------AHNLISISNDGRLCSW  196 (401)
Q Consensus       168 ~~v~~~~~~~~~-~------~~~l~s~~~dg~i~~w  196 (401)
                      .++.++.+...+ .      .-+|.+|-.+|.+.-.
T Consensus       633 ~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~  668 (1205)
T KOG1898|consen  633 SPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF  668 (1205)
T ss_pred             CCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence            666666554321 1      2256667677765554

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=88.84  E-value=17  Score=32.55  Aligned_cols=207  Identities=12%  Similarity=-0.062  Sum_probs=0.0

Q ss_pred             EEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCc-----------eEEEEeCCC
Q psy17342        183 NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG-----------NVYSACRHG  251 (401)
Q Consensus       183 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----------~i~~~~~~~  251 (401)
                      +++.|..+..+..+|+......-....-..     ........... -++.+++.|+...           .+..||...
T Consensus        42 yv~gG~~~~~~~~~d~~~~~~~W~~l~~~p-----~~~r~~~~~v~-~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~  115 (376)
T PRK14131         42 YVGLGSAGTSWYKLDLNAPSKGWTKIAAFP-----GGPREQAVAAF-IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKT  115 (376)
T ss_pred             EEEeCCCCCeEEEEECCCCCCCeEECCcCC-----CCCcccceEEE-ECCEEEEEcCCCCCCCCCceeEcccEEEEeCCC


Q ss_pred             CCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC---------------------------------------C
Q psy17342        252 NKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD---------------------------------------W  292 (401)
Q Consensus       252 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d---------------------------------------~  292 (401)
                      ++-..+.........-.+....-+      +.+++.|+.+                                       .
T Consensus       116 n~W~~~~~~~p~~~~~~~~~~~~~------~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  189 (376)
T PRK14131        116 NSWQKLDTRSPVGLAGHVAVSLHN------GKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNK  189 (376)
T ss_pred             CEEEeCCCCCCCcccceEEEEeeC------CEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCc


Q ss_pred             eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEe------cCCEEEEEeCCCCCCCcceEEeecCCCC------
Q psy17342        293 SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVE------VAGRVDLWNLNLDTEVPATSAIVEGAPA------  360 (401)
Q Consensus       293 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~------  360 (401)
                      .+.+||..+.+-...-..........+....+..+++.|+      ....++.+++..................      
T Consensus       190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~  269 (376)
T PRK14131        190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEG  269 (376)
T ss_pred             eEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCc


Q ss_pred             -eEEEEecCCCcEEEEEecC----------------------CcEEEEEeccCccceeeeeecC
Q psy17342        361 -LSRVTWTPNGTQLCVGDEK----------------------GAITMFDVGEVGIACLKFITSG  401 (401)
Q Consensus       361 -v~~~~~s~~g~~l~~~~~d----------------------g~v~iw~~~~~~~~~l~~~~~g  401 (401)
                       ....+...++++++.|+.+                      ..+.+||+.+.+.+.+..++..
T Consensus       270 ~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~  333 (376)
T PRK14131        270 VAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQG  333 (376)
T ss_pred             cceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCC

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=88.53  E-value=16  Score=31.86  Aligned_cols=66  Identities=15%  Similarity=0.114  Sum_probs=32.7

Q ss_pred             CCCeEEEEcC-----CceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC----eEEEEEeeC
Q psy17342        231 DVNNFVVGCE-----DGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW----SVKLWNIKE  301 (401)
Q Consensus       231 ~~~~l~~~~~-----d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~  301 (401)
                      ++.+.+.|+.     ...+..||+...+-..+..+.... ..........      +.+++.|+.++    .+.+||..+
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~------~~iYv~GG~~~~~~~~~~~yd~~~  195 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQ------NELYVFGGGSNIAYTDGYKYSPKK  195 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEEC------CEEEEEcCCCCccccceEEEecCC
Confidence            4566666664     235778887755433222222111 1111111112      57778787654    355788765


Q ss_pred             CC
Q psy17342        302 NK  303 (401)
Q Consensus       302 ~~  303 (401)
                      .+
T Consensus       196 ~~  197 (323)
T TIGR03548       196 NQ  197 (323)
T ss_pred             Ce
Confidence            43

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.18  E-value=12  Score=29.86  Aligned_cols=91  Identities=8%  Similarity=-0.032  Sum_probs=54.7

Q ss_pred             CCcEEEEEeCcCCCCCceEEEec----CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcE
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFC----QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPV  170 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  170 (401)
                      ....|++||+.+++......+..    ...++.+     +..+-.-.-.+|.-..+|.++-+....       ....+.-
T Consensus        66 g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~-------~~y~GeG  133 (262)
T COG3823          66 GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGR-------FSYEGEG  133 (262)
T ss_pred             ccceeEEEeccCceEEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHHhhhhcc-------cccCCcc
Confidence            46789999999877654444331    1122222     223333334788888999887665322       2334555


Q ss_pred             EEEEEeecCCceEEEEEeCCCcEEEeeccCC
Q psy17342        171 FCMSVIGTQNAHNLISISNDGRLCSWSLEML  201 (401)
Q Consensus       171 ~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~  201 (401)
                      +.++.    ++..|+.+....+++.-|.++.
T Consensus       134 WgLt~----d~~~LimsdGsatL~frdP~tf  160 (262)
T COG3823         134 WGLTS----DDKNLIMSDGSATLQFRDPKTF  160 (262)
T ss_pred             eeeec----CCcceEeeCCceEEEecCHHHh
Confidence            66654    6666777777777887776653

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=88.08  E-value=15  Score=31.00  Aligned_cols=199  Identities=13%  Similarity=0.044  Sum_probs=113.2

Q ss_pred             CCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEE
Q psy17342        166 HTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVY  245 (401)
Q Consensus       166 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  245 (401)
                      -.+.+..+.+    .+++...+..+.-+++.|+.+...|...-.+..      ..--.++..+   +++..++..+.-+.
T Consensus        85 ~~~l~~Dv~v----se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt------~gyaygv~vs---Gn~aYVadlddgfL  151 (370)
T COG5276          85 ARDLFADVRV----SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNT------DGYAYGVYVS---GNYAYVADLDDGFL  151 (370)
T ss_pred             hhhhhheeEe----cccEEEEEcCCCceEEEeccCCCCcceeccccC------CceEEEEEec---CCEEEEeeccCcEE
Confidence            3445566666    456777777888899999998666655433321      2334455544   78888888666666


Q ss_pred             EEeCCCCCCC-ceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC-ce--EEEeecCCceEEEEEC
Q psy17342        246 SACRHGNKAG-NVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK-PV--HSFNEFRDYVMDVQWS  321 (401)
Q Consensus       246 ~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~--~~~~~~~~~v~~v~~~  321 (401)
                      +.|+...+.. +.-.+....+.-..++.+        +++-..+..|+-+.|-|+.+.. ++  ..... ...+.++..+
T Consensus       152 ivdvsdpssP~lagrya~~~~d~~~v~IS--------Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~-g~g~~sv~vs  222 (370)
T COG5276         152 IVDVSDPSSPQLAGRYALPGGDTHDVAIS--------GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNT-GPGTYSVSVS  222 (370)
T ss_pred             EEECCCCCCceeeeeeccCCCCceeEEEe--------cCeEEEEEeCCCeEEEEccCCCCCeEEEEEec-CCceEEEEec
Confidence            7777654432 223333334444556666        6677777789999999997642 22  22222 3378888888


Q ss_pred             CCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        322 PINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       322 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      ++.. +++..  +--+.+-|....+....+.. .....++..-.+.-.+++...+..+.-+.+-|+.+.
T Consensus       223 dnr~-y~vvy--~egvlivd~s~~ssp~~~gs-yet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp  287 (370)
T COG5276         223 DNRA-YLVVY--DEGVLIVDVSGPSSPTVFGS-YETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNP  287 (370)
T ss_pred             CCee-EEEEc--ccceEEEecCCCCCceEeec-cccCCcccccceecccceeeeeccccCceeEeccCC
Confidence            8864 44443  33466777766553333221 111222111122233455555555555566665543

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=87.82  E-value=22  Score=32.60  Aligned_cols=55  Identities=15%  Similarity=0.160  Sum_probs=35.0

Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec-----CCCCceeeeecCcc
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE-----GHEGPVVGLSSHRA  275 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~-----~~~~~v~~i~~~~~  275 (401)
                      ...+.|+|. +++.+|++--..|.|++++........+..+.     ...+....|+++|+
T Consensus        30 ~~Pw~mafl-PDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd   89 (454)
T TIGR03606        30 NKPWALLWG-PDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD   89 (454)
T ss_pred             CCceEEEEc-CCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence            356788999 78876665554699999875433222221111     13566789999987

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=87.39  E-value=9.6  Score=37.53  Aligned_cols=111  Identities=14%  Similarity=0.128  Sum_probs=64.8

Q ss_pred             CcEEEEEeCCCeEEEEEeeCCCceEEEeecCCc--------eEEEEECC----------------CCCcEEEEEecCCEE
Q psy17342        282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDY--------VMDVQWSP----------------INPALFATVEVAGRV  337 (401)
Q Consensus       282 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--------v~~v~~~~----------------~~~~~l~~~~~d~~i  337 (401)
                      +..+..++.++.|.-.|.++|+.+.++......        ...+++..                .+. .++.++.|+.|
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~-rV~~~T~Dg~L  272 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR-RIILPTSDARL  272 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCC-EEEEecCCCeE
Confidence            456777777888999999999888777642210        11222221                122 46667789999


Q ss_pred             EEEeCCCCCCCcceEEe--------ecCC-CCeEEEEecC--CCcEEEEEec----------CCcEEEEEeccCccc
Q psy17342        338 DLWNLNLDTEVPATSAI--------VEGA-PALSRVTWTP--NGTQLCVGDE----------KGAITMFDVGEVGIA  393 (401)
Q Consensus       338 ~iwd~~~~~~~~~~~~~--------~~~~-~~v~~~~~s~--~g~~l~~~~~----------dg~v~iw~~~~~~~~  393 (401)
                      .-.|.++++....+...        .+.. ..-..+.-.|  .+..+++|+.          +|.|+-+|++++++.
T Consensus       273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~  349 (764)
T TIGR03074       273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV  349 (764)
T ss_pred             EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence            99999998876543210        0000 0000111122  1345566643          688999999999643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=87.36  E-value=28  Score=33.37  Aligned_cols=40  Identities=25%  Similarity=0.262  Sum_probs=30.9

Q ss_pred             CceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC
Q psy17342        110 TPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV  150 (401)
Q Consensus       110 ~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~  150 (401)
                      ..++...-...|..+.|.+++ ..+++...+|.|.+||...
T Consensus       121 ~~~~~~kl~~kvv~Ik~~~~~-~~I~vvl~nG~i~~~d~~~  160 (670)
T PF10395_consen  121 TNEFELKLDDKVVGIKFSSDG-KIIYVVLENGSIQIYDFSE  160 (670)
T ss_pred             cceEEEEcccceEEEEEecCC-CEEEEEEcCCcEEEEeccc
Confidence            344555567899999999866 5666667899999999943

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=87.27  E-value=19  Score=31.42  Aligned_cols=163  Identities=15%  Similarity=0.246  Sum_probs=91.1

Q ss_pred             ccceEEEEeccCCCCeEEEEcCCce------EEEEeCCCCCC--Ccee-----eecCCCC--------ceeeeecCccCC
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCEDGN------VYSACRHGNKA--GNVE-----CYEGHEG--------PVVGLSSHRAQG  277 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d~~------i~~~~~~~~~~--~~~~-----~~~~~~~--------~v~~i~~~~~~~  277 (401)
                      -..+..+.+. ++...+++-+.+|.      ++.+.+.....  ..+.     .+....+        ..-+|++.++  
T Consensus        19 ~GGlSgl~~~-~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~--   95 (326)
T PF13449_consen   19 FGGLSGLDYD-PDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPD--   95 (326)
T ss_pred             cCcEeeEEEe-CCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecC--
Confidence            3567888888 45566666677777      66555443110  0111     1111111        2336777444  


Q ss_pred             CCCCCcEEEEEeCC------CeEEEEEeeCCCceEEEe---------------ecCCceEEEEECCCCCcEEEEEe----
Q psy17342        278 HIDFSHLYLTSSYD------WSVKLWNIKENKPVHSFN---------------EFRDYVMDVQWSPINPALFATVE----  332 (401)
Q Consensus       278 ~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~---------------~~~~~v~~v~~~~~~~~~l~~~~----  332 (401)
                          +.++++.-.+      ..|+.++.. ++.+..+.               ..+...-+++++|+|+.++++.-    
T Consensus        96 ----g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~  170 (326)
T PF13449_consen   96 ----GSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLK  170 (326)
T ss_pred             ----CCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECcccc
Confidence                5677766656      678888865 66554442               12446789999999984443321    


Q ss_pred             cCC---------EEEEEeC--CC-CCCCcceEEeec------CCCCeEEEEecCCCcEEEEEe-----cCCcEEEEEecc
Q psy17342        333 VAG---------RVDLWNL--NL-DTEVPATSAIVE------GAPALSRVTWTPNGTQLCVGD-----EKGAITMFDVGE  389 (401)
Q Consensus       333 ~d~---------~i~iwd~--~~-~~~~~~~~~~~~------~~~~v~~~~~s~~g~~l~~~~-----~dg~v~iw~~~~  389 (401)
                      .|+         .++|+..  .+ +.....+.....      ....++.+.+-+++++|+.=-     ....++|+.+.-
T Consensus       171 ~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l  250 (326)
T PF13449_consen  171 QDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDL  250 (326)
T ss_pred             CCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEc
Confidence            122         1555544  43 222333433333      356789999999999776432     244566666653

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.21  E-value=3  Score=23.02  Aligned_cols=38  Identities=24%  Similarity=0.308  Sum_probs=25.9

Q ss_pred             CcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEE
Q psy17342        282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQW  320 (401)
Q Consensus       282 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~  320 (401)
                      ..++++...+++|.++|..+++.+..+.. ......++|
T Consensus         4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~   41 (42)
T TIGR02276         4 TKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV   41 (42)
T ss_pred             CEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence            34555555688999999988888777766 333344544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG4460|consensus

Probab=87.21  E-value=8.4  Score=35.15  Aligned_cols=76  Identities=16%  Similarity=0.257  Sum_probs=48.7

Q ss_pred             ceEEEEECCCCCcEEEEEecCCEEEEEe---------CCCCCCCcceEEe--------ecCCCCeEEEEecCCC---cEE
Q psy17342        314 YVMDVQWSPINPALFATVEVAGRVDLWN---------LNLDTEVPATSAI--------VEGAPALSRVTWTPNG---TQL  373 (401)
Q Consensus       314 ~v~~v~~~~~~~~~l~~~~~d~~i~iwd---------~~~~~~~~~~~~~--------~~~~~~v~~~~~s~~g---~~l  373 (401)
                      .|..+..++.|. .++-.|.+|.+.++=         ++.++..-.++..        ....-.+..++|+|+.   ..|
T Consensus       105 eV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  105 EVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            577888999998 556666677655542         1223222111110        0112346788999985   678


Q ss_pred             EEEecCCcEEEEEeccC
Q psy17342        374 CVGDEKGAITMFDVGEV  390 (401)
Q Consensus       374 ~~~~~dg~v~iw~~~~~  390 (401)
                      ..-+.|..|++|++...
T Consensus       184 ~iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEP  200 (741)
T ss_pred             EEEecCcEEEEEecCCc
Confidence            88889999999999765

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=87.02  E-value=24  Score=32.29  Aligned_cols=60  Identities=12%  Similarity=0.148  Sum_probs=47.1

Q ss_pred             CcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCC
Q psy17342        282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       282 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~  343 (401)
                      +.++|.++..|.|++||.-..+....+++-...|..+..+.+|+++||+|  ...+.+-|++
T Consensus       573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~  632 (776)
T COG5167         573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVP  632 (776)
T ss_pred             CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecc
Confidence            47999999999999999654444445666677899999999999877777  4477777764

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=86.96  E-value=35  Score=34.04  Aligned_cols=240  Identities=9%  Similarity=0.047  Sum_probs=0.0

Q ss_pred             EeCCCCceEEEEecCCeEEEEECCCCCC-CceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCC
Q psy17342        126 FAKFNPYLILGGTYSGQIVLWDTRVQKK-TPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSP  204 (401)
Q Consensus       126 ~~~~~~~~l~~g~~dg~v~iw~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~  204 (401)
                      |.|.-..+|+.|      .+-++...+. ...........|..+.+..++.  -.....-.....+..+.+--+......
T Consensus         1 ~DP~~~~Lla~g------~i~~~~~~r~~~~~~~i~A~asGesg~~L~L~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (765)
T PF10214_consen    1 YDPTVGSLLAIG------EIQDVSDLRSGSRPVPILAFASGESGSVLRLSR--LDEEEWSWGNNDDASLRVPTIDPELSG   72 (765)
T ss_pred             CCCCcCccEEEE------EeeecccCCCCCceeEEEEEecCCCCCeeEEEE--ecccccccccccccccccCCCCccccc


Q ss_pred             ccccccccccccCCccceEEEEec---cCCCCe--EEEEcCCceEEEEe----------------CCCCCCCceeeecCC
Q psy17342        205 QETRDLQYNNKQTKNLAVLSLAFP---QNDVNN--FVVGCEDGNVYSAC----------------RHGNKAGNVECYEGH  263 (401)
Q Consensus       205 ~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~--l~~~~~d~~i~~~~----------------~~~~~~~~~~~~~~~  263 (401)
                      ...+....        +|..|+|.   ..-+..  .+..-....+.|+.                +.......+..-...
T Consensus        73 ~w~i~~~~--------PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tg  144 (765)
T PF10214_consen   73 AWSIDDGS--------PIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTG  144 (765)
T ss_pred             eeEcCCCC--------CeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcC


Q ss_pred             CCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe-----eCCCceEEEeecCCce------E----EEEECCCCCcEE
Q psy17342        264 EGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI-----KENKPVHSFNEFRDYV------M----DVQWSPINPALF  328 (401)
Q Consensus       264 ~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-----~~~~~~~~~~~~~~~v------~----~v~~~~~~~~~l  328 (401)
                      ..+...++|+|..     ...||.....|...|||+     .....+.....+.+.+      .    .+.|.++...+|
T Consensus       145 g~~~aDv~FnP~~-----~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL  219 (765)
T PF10214_consen  145 GFPHADVAFNPWD-----QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL  219 (765)
T ss_pred             CCccceEEeccCc-----cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE


Q ss_pred             EEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        329 ATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       329 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      ++.-.  .+.++|+.+...... -........|..+.-++...-.+.--....|...++..
T Consensus       220 v~~r~--~l~~~d~~~~~~~~~-l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~  277 (765)
T PF10214_consen  220 VCNRS--KLMLIDFESNWQTEY-LVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS  277 (765)
T ss_pred             EEcCC--ceEEEECCCCCccch-hccCCChhheeeEEecCCccceEEEEecCeEEEEEccC

These proteins are found in fungi.

>KOG2280|consensus

Probab=86.92  E-value=31  Score=33.32  Aligned_cols=206  Identities=12%  Similarity=0.114  Sum_probs=95.3

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS  197 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd  197 (401)
                      -+.+.++..+|..-.-++  +.--.|+|++........       +.-..+++-.+.|  + +...|+....+|++.+|+
T Consensus        43 ~gGpIAV~r~p~~~~~~~--~a~~~I~If~~sG~lL~~-------~~w~~~~lI~mgW--s-~~eeLI~v~k~g~v~Vy~  110 (829)
T KOG2280|consen   43 FGGPIAVTRSPSKLVPLY--SARPYIRIFNISGQLLGR-------ILWKHGELIGMGW--S-DDEELICVQKDGTVHVYG  110 (829)
T ss_pred             cCCceEEEeccccccccc--ccceeEEEEeccccchHH-------HHhcCCCeeeecc--c-CCceEEEEeccceEEEee
Confidence            345556666663211222  334568888876543221       1122237778999  4 455677788999999999


Q ss_pred             ccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec---CCCCceeeeecCc
Q psy17342        198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE---GHEGPVVGLSSHR  274 (401)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~---~~~~~v~~i~~~~  274 (401)
                      +..  .......+.   .......|..+.+. .+|  +++-..+|.+.+-+-.  .......+.   ....+-.|-...+
T Consensus       111 ~~g--e~ie~~svg---~e~~~~~I~ec~~f-~~G--Vavlt~~g~v~~i~~~--~~~~~~~~~diP~~~~~~~~Wt~~~  180 (829)
T KOG2280|consen  111 LLG--EFIESNSVG---FESQMSDIVECRFF-HNG--VAVLTVSGQVILINGV--EEPKLRKMPDIPYNELPKSCWTVFQ  180 (829)
T ss_pred             cch--hhhcccccc---cccccCceeEEEEe-cCc--eEEEecCCcEEEEcCC--CcchhhhCCCCCCccCCCcceeEec
Confidence            863  222111110   11122334444443 222  3333445555543322  111122222   1112212222222


Q ss_pred             cCCCCCCCcEEEEEe-CCCeEEEEEeeCC-CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcc
Q psy17342        275 AQGHIDFSHLYLTSS-YDWSVKLWNIKEN-KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA  350 (401)
Q Consensus       275 ~~~~~~~~~~l~s~~-~d~~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  350 (401)
                      ....   ...++--. ..+ ..++-.... .....+....+.+..+..||+.+ +|+--..+|.|.+-+....+....
T Consensus       181 ~~~~---~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~-~laLyt~~G~i~~vs~D~~~~lce  253 (829)
T KOG2280|consen  181 PHRQ---STILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRR-FLALYTETGKIWVVSIDLSQILCE  253 (829)
T ss_pred             CCCc---ceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcc-eEEEEecCCcEEEEecchhhhhhc
Confidence            2100   11111111 000 011111111 11112222235678899999997 788888899999888776554433

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=86.87  E-value=2.3  Score=23.54  Aligned_cols=29  Identities=14%  Similarity=0.223  Sum_probs=21.5

Q ss_pred             CCCCcEEEEEecCCEEEEEeCCCCCCCcc
Q psy17342        322 PINPALFATVEVAGRVDLWNLNLDTEVPA  350 (401)
Q Consensus       322 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  350 (401)
                      |+++.++++...++.|.++|..+.+....
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~   29 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIAT   29 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence            56776777777789999999977654443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PLN02153 epithiospecifier protein

Probab=86.67  E-value=22  Score=31.35  Aligned_cols=21  Identities=14%  Similarity=0.055  Sum_probs=12.7

Q ss_pred             CceEEEEEeCCC-----cEEEeeccC
Q psy17342        180 NAHNLISISNDG-----RLCSWSLEM  200 (401)
Q Consensus       180 ~~~~l~s~~~dg-----~i~~wd~~~  200 (401)
                      ++..++.|+.++     .+.+||+.+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t  110 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVK  110 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCC
Confidence            556666766532     466777654

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=86.41  E-value=16  Score=33.36  Aligned_cols=31  Identities=19%  Similarity=0.400  Sum_probs=24.2

Q ss_pred             CceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342        265 GPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE  301 (401)
Q Consensus       265 ~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  301 (401)
                      ..|.++...+.      .+.+++...++.|.+|++..
T Consensus       190 ~~I~~v~~d~~------r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPS------RRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETT------TTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCC------cCEEEEEeCCCcEEEEEEeC
Confidence            34888888887      58999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=86.19  E-value=19  Score=30.36  Aligned_cols=140  Identities=11%  Similarity=-0.002  Sum_probs=87.8

Q ss_pred             cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEe
Q psy17342        117 CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSW  196 (401)
Q Consensus       117 ~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~w  196 (401)
                      ..+-+..+.++.   +++..+..+.-++|.|+.+.... .....+   .-.+--.++..    .|++...+..|.-+.+.
T Consensus        85 ~~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP-~~~~~l---nt~gyaygv~v----sGn~aYVadlddgfLiv  153 (370)
T COG5276          85 ARDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSP-TLIGFL---NTDGYAYGVYV----SGNYAYVADLDDGFLIV  153 (370)
T ss_pred             hhhhhheeEecc---cEEEEEcCCCceEEEeccCCCCc-ceeccc---cCCceEEEEEe----cCCEEEEeeccCcEEEE
Confidence            356778888864   45666667777999999887652 221111   11233444444    78888888877788899


Q ss_pred             eccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCcc
Q psy17342        197 SLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRA  275 (401)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  275 (401)
                      |+.....|+..-....     ....-..++.+   +++-.++..|+-+.+.|........+..-..-...+.++..+++
T Consensus       154 dvsdpssP~lagrya~-----~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn  224 (370)
T COG5276         154 DVSDPSSPQLAGRYAL-----PGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN  224 (370)
T ss_pred             ECCCCCCceeeeeecc-----CCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC
Confidence            9987666654433322     22233456655   67778888899999999876544322222222336788888876

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=86.11  E-value=3.5  Score=22.41  Aligned_cols=29  Identities=10%  Similarity=0.160  Sum_probs=21.9

Q ss_pred             CCCeeEEEEeCCCCceEEEEecC--CeEEEE
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYS--GQIVLW  146 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~d--g~v~iw  146 (401)
                      ...-....|+|+|+.++.+...+  |.-.||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            45677889999998888888777  776666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=86.10  E-value=25  Score=31.43  Aligned_cols=65  Identities=14%  Similarity=-0.068  Sum_probs=42.5

Q ss_pred             EEEEEeCCCeEEEEEeeCCCceEEEeecC-CceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcc
Q psy17342        284 LYLTSSYDWSVKLWNIKENKPVHSFNEFR-DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA  350 (401)
Q Consensus       284 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  350 (401)
                      .+..++.++.+..+|.++++.+....... ..+..-..-.++  .+..++.++.+...|..+++....
T Consensus       113 ~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~  178 (370)
T COG1520         113 KIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWT  178 (370)
T ss_pred             eEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEE
Confidence            36677778889999998899888887654 122222333344  344444678888888887776444

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=85.86  E-value=37  Score=33.33  Aligned_cols=82  Identities=11%  Similarity=0.067  Sum_probs=52.3

Q ss_pred             CCcEEEEEEeecCCceEEEEEeCCCcEEEeeccC-CCCC------ccccccc-----ccc-ccCCccceEEEEeccC--C
Q psy17342        167 THPVFCMSVIGTQNAHNLISISNDGRLCSWSLEM-LSSP------QETRDLQ-----YNN-KQTKNLAVLSLAFPQN--D  231 (401)
Q Consensus       167 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~------~~~~~~~-----~~~-~~~~~~~v~~~~~~~~--~  231 (401)
                      .-.|..+..  +++|.+++..+..|.. |-.+.. .+..      .....+.     ... .......|..+.|+|.  +
T Consensus        84 ~f~v~~i~~--n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~  160 (717)
T PF10168_consen   84 LFEVHQISL--NPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES  160 (717)
T ss_pred             ceeEEEEEE--CCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence            346778887  9999999988886644 433321 1100      0111111     000 1234568899999964  3


Q ss_pred             CCeEEEEcCCceEEEEeCCC
Q psy17342        232 VNNFVVGCEDGNVYSACRHG  251 (401)
Q Consensus       232 ~~~l~~~~~d~~i~~~~~~~  251 (401)
                      +..|++-+.|+.+|+||+..
T Consensus       161 ~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  161 DSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CCeEEEEecCCEEEEEecCC
Confidence            68899999999999999964

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=85.65  E-value=25  Score=31.04  Aligned_cols=207  Identities=11%  Similarity=-0.066  Sum_probs=0.0

Q ss_pred             EEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC-----------ceEEEEeCCC
Q psy17342        183 NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED-----------GNVYSACRHG  251 (401)
Q Consensus       183 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----------~~i~~~~~~~  251 (401)
                      +++.|.....+..+|+......-....-..     ........... -++.+.++|+.+           ..+..||...
T Consensus        21 yv~GG~~~~~~~~~d~~~~~~~W~~l~~~p-----~~~R~~~~~~~-~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~   94 (346)
T TIGR03547        21 YVGLGSAGTSWYKLDLKKPSKGWQKIADFP-----GGPRNQAVAAA-IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKK   94 (346)
T ss_pred             EEEccccCCeeEEEECCCCCCCceECCCCC-----CCCcccceEEE-ECCEEEEEeCCCCCCCCCcceecccEEEEECCC


Q ss_pred             CCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC---------------------------------------C
Q psy17342        252 NKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD---------------------------------------W  292 (401)
Q Consensus       252 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d---------------------------------------~  292 (401)
                      +.-..+.........-.+....-.      +.+++.|+.+                                       .
T Consensus        95 ~~W~~~~~~~p~~~~~~~~~~~~~------g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (346)
T TIGR03547        95 NSWQKLDTRSPVGLLGASGFSLHN------GQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNK  168 (346)
T ss_pred             CEEecCCCCCCCcccceeEEEEeC------CEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccc


Q ss_pred             eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecC------CEEEEEeCCCCCCCcceEEeecC------CCC
Q psy17342        293 SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVA------GRVDLWNLNLDTEVPATSAIVEG------APA  360 (401)
Q Consensus       293 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~------~~~  360 (401)
                      .+.+||..+.+=...-..........+..--+..+++.|+.+      ..+..+++...............      ...
T Consensus       169 ~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~  248 (346)
T TIGR03547       169 NVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGL  248 (346)
T ss_pred             eEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccc


Q ss_pred             eEEEEecCCCcEEEEEecC----------------------CcEEEEEeccCccceeeeeecC
Q psy17342        361 LSRVTWTPNGTQLCVGDEK----------------------GAITMFDVGEVGIACLKFITSG  401 (401)
Q Consensus       361 v~~~~~s~~g~~l~~~~~d----------------------g~v~iw~~~~~~~~~l~~~~~g  401 (401)
                      ....+...++++.+.|+.+                      ..+.+||..+.+.+.+..++..
T Consensus       249 ~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~  311 (346)
T TIGR03547       249 AGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQG  311 (346)
T ss_pred             cEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCC

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=85.49  E-value=3.2  Score=39.35  Aligned_cols=36  Identities=11%  Similarity=0.211  Sum_probs=26.7

Q ss_pred             CeEEEEecC----CCcEEEEEecCCcEEEEEeccCccceeee
Q psy17342        360 ALSRVTWTP----NGTQLCVGDEKGAITMFDVGEVGIACLKF  397 (401)
Q Consensus       360 ~v~~~~~s~----~g~~l~~~~~dg~v~iw~~~~~~~~~l~~  397 (401)
                      ....++++.    +..+|++.+.|+++++||+.++  +++.+
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~--~~~~~  255 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETG--QCLAT  255 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTT--CEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCC--eEEEE
Confidence            455566666    6789999999999999999998  45443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=84.81  E-value=35  Score=32.06  Aligned_cols=263  Identities=11%  Similarity=0.111  Sum_probs=117.0

Q ss_pred             cCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCC-CCceEEEec-CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCC
Q psy17342         74 STQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK-TTPEFEFFC-QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQ  151 (401)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~-~~~~~~~~~-~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~  151 (401)
                      ..++..++.+.          .+|.+....+.... .+....++. .....++.+..++..+++.|+.-|.=.++.+...
T Consensus       219 ~~~~~~~lL~~----------e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~  288 (504)
T PF10433_consen  219 DKDGDRILLQD----------EDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLS  288 (504)
T ss_dssp             STTSSEEEEEE----------TTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESE
T ss_pred             cCCCCEEEEEe----------CCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCC
Confidence            44555677777          79999888876533 122223333 5566788887755448888887776556555533


Q ss_pred             CCCceeeccccccCCCCcEEEEEEeec--CCce------EEEEEe---CCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        152 KKTPVHRTPLSVMAHTHPVFCMSVIGT--QNAH------NLISIS---NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~------~l~s~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      .....     .....-+||.+++....  ....      .+++++   .+|.+++..-.-  ... .......... ...
T Consensus       289 ~l~~~-----~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi--~~~-~~~~~~~~l~-~v~  359 (504)
T PF10433_consen  289 NLEVL-----DSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGI--GIE-GLELASSELP-GVT  359 (504)
T ss_dssp             SEEEE-----EEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESB--EEE---EEEEEEES-TEE
T ss_pred             CcEEE-----EeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccC--Cce-eeeeeccCCC-Cce
Confidence            32111     11344578888888532  1122      566654   366788764321  111 0111110011 144


Q ss_pred             ceEEEEeccCCCCeEEEEcCCceEEEEeCCC-CCCCceeee-----cCCCCceeeeecCccCCCCCCCcEEEEEeCCCeE
Q psy17342        221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHG-NKAGNVECY-----EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSV  294 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~-~~~~~~~~~-----~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i  294 (401)
                      .++.+.....+..+++.+..+.+ +++.+.. .....+...     ......+.+-.+.        +..++=.. ...|
T Consensus       360 ~iW~l~~~~~~~~~lv~S~~~~T-~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--------~~~ivQVt-~~~i  429 (504)
T PF10433_consen  360 GIWTLKLSSSDHSYLVLSFPNET-RVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--------DGRIVQVT-PKGI  429 (504)
T ss_dssp             EEEEE-SSSSSBSEEEEEESSEE-EEEEES----SSEEEEE---TS-SSS-EEEEEEET--------TTEEEEEE-SSEE
T ss_pred             EEEEeeecCCCceEEEEEcCCce-EEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--------CCeEEEEe-cCeE
Confidence            56666654223456666555444 3333321 111111111     1111111111111        13333333 3458


Q ss_pred             EEEEeeCCCceEEEeec-CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe--ecCCCCeEEEEecC
Q psy17342        295 KLWNIKENKPVHSFNEF-RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAI--VEGAPALSRVTWTP  368 (401)
Q Consensus       295 ~iwd~~~~~~~~~~~~~-~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~s~  368 (401)
                      ++.+...++....+... ...|.+.+....   .++.+-.++.+..+.+............  ..-...|.++...|
T Consensus       430 ~l~~~~~~~~~~~w~~~~~~~I~~a~~~~~---~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  430 RLIDLEDGKLTQEWKPPAGSIIVAASINDP---QVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             EEEESSSTSEEEEEE-TTS---SEEEESSS---EEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             EEEECCCCeEEEEEeCCCCCeEEEEEECCC---EEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence            88887777766665442 344555555542   3444445788888888765432221100  11345677777665

...

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=84.45  E-value=12  Score=31.67  Aligned_cols=100  Identities=13%  Similarity=0.174  Sum_probs=57.2

Q ss_pred             CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEe------cCCEEEEEeCCCCCCCcceEEe-ecCCCCeEE
Q psy17342        291 DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVE------VAGRVDLWNLNLDTEVPATSAI-VEGAPALSR  363 (401)
Q Consensus       291 d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~  363 (401)
                      -..|++||..+.+-...-.+-.+.|+++.|..+.+ ++++|.      ....+..||+.+......-... ..-..+|+.
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a   93 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA   93 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence            45699999876543332223456899999986654 777764      3567888998876432211100 011356777


Q ss_pred             EEecC-CC-cEEEEEe-cCCcEEEEEeccCc
Q psy17342        364 VTWTP-NG-TQLCVGD-EKGAITMFDVGEVG  391 (401)
Q Consensus       364 ~~~s~-~g-~~l~~~~-~dg~v~iw~~~~~~  391 (401)
                      +.+.. |+ ++.+.|. .+|..++...+..+
T Consensus        94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~  124 (281)
T PF12768_consen   94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSS  124 (281)
T ss_pred             EEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence            77643 33 4444444 45555555554443

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=84.12  E-value=37  Score=31.86  Aligned_cols=152  Identities=13%  Similarity=0.161  Sum_probs=75.1

Q ss_pred             CCCCeEEEEcCCceEEEEeCCCCCCCceeeecCC-CCceeeeecCccCCCCCCCcEEEEEeC--CCeEEEEEeeCCCceE
Q psy17342        230 NDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGH-EGPVVGLSSHRAQGHIDFSHLYLTSSY--DWSVKLWNIKENKPVH  306 (401)
Q Consensus       230 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~  306 (401)
                      .+...++.+.++|.++...+...........-+. .....++.+....     +.+++.|+.  |+.+.-|....-+.+.
T Consensus       220 ~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g-----~d~lf~gs~~gds~l~~~~~~~l~~~~  294 (504)
T PF10433_consen  220 KDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNG-----GDYLFVGSEFGDSQLLQISLSNLEVLD  294 (504)
T ss_dssp             TTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT-------EEEEEESSS-EEEEEEESESEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCC-----CEEEEEEEecCCcEEEEEeCCCcEEEE
Confidence            5678899999999999877653221111122222 3445566655541     237778877  4455555544445555


Q ss_pred             EEeecCCceEEEEECCC---CC-------cEEEEEe--cCCEEEEEeCCCCCC-CcceEEeecCCCCeEEEEecC-CCcE
Q psy17342        307 SFNEFRDYVMDVQWSPI---NP-------ALFATVE--VAGRVDLWNLNLDTE-VPATSAIVEGAPALSRVTWTP-NGTQ  372 (401)
Q Consensus       307 ~~~~~~~~v~~v~~~~~---~~-------~~l~~~~--~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~s~-~g~~  372 (401)
                      ++.. -++|.++++.+.   +.       .+++++|  .+|.+++..-.-+-. ..........-..++.+.... +..+
T Consensus       295 ~~~N-~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~  373 (504)
T PF10433_consen  295 SLPN-WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSY  373 (504)
T ss_dssp             EE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSE
T ss_pred             eccC-cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceE
Confidence            5655 578888888532   11       3555544  568888874321111 011111122233455555443 2456


Q ss_pred             EEEEecCCcEEEEEec
Q psy17342        373 LCVGDEKGAITMFDVG  388 (401)
Q Consensus       373 l~~~~~dg~v~iw~~~  388 (401)
                      |+.+..+ .=+++.+.
T Consensus       374 lv~S~~~-~T~vl~~~  388 (504)
T PF10433_consen  374 LVLSFPN-ETRVLQIS  388 (504)
T ss_dssp             EEEEESS-EEEEEEES
T ss_pred             EEEEcCC-ceEEEEEe
Confidence            6666554 35566664

...

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=83.10  E-value=25  Score=29.13  Aligned_cols=137  Identities=8%  Similarity=0.044  Sum_probs=69.6

Q ss_pred             EEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC-C--CeEEEEEeeCCCceEEEe------ecCCc
Q psy17342        244 VYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-D--WSVKLWNIKENKPVHSFN------EFRDY  314 (401)
Q Consensus       244 i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d--~~i~iwd~~~~~~~~~~~------~~~~~  314 (401)
                      -.+||+..++.+.+..  .....+.+-.+.|+      |+++.+|+. +  ..+++++......-..+.      ....+
T Consensus        48 s~~yD~~tn~~rpl~v--~td~FCSgg~~L~d------G~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW  119 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTV--QTDTFCSGGAFLPD------GRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRW  119 (243)
T ss_pred             EEEEecCCCcEEeccC--CCCCcccCcCCCCC------CCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCc
Confidence            3567877654332221  12222333456666      789998875 2  358888764311111111      11234


Q ss_pred             eEEEEECCCCCcEEEEEecCC-EEEEEeCCCCCC-CcceEEee-----cCCCCeEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342        315 VMDVQWSPINPALFATVEVAG-RVDLWNLNLDTE-VPATSAIV-----EGAPALSRVTWTPNGTQLCVGDEKGAITMFDV  387 (401)
Q Consensus       315 v~~v~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~-~~~~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~  387 (401)
                      -..+..-|||+ +|+.|+... ...+|.-+.... ...+....     ....---.+-..|+|++++.+..+.  .|||.
T Consensus       120 YpT~~~L~DG~-vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~  196 (243)
T PF07250_consen  120 YPTATTLPDGR-VLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDY  196 (243)
T ss_pred             cccceECCCCC-EEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeC
Confidence            44566678998 666666553 445554422111 11111000     0011122456679999998888654  46788


Q ss_pred             ccCc
Q psy17342        388 GEVG  391 (401)
Q Consensus       388 ~~~~  391 (401)
                      .+.+
T Consensus       197 ~~n~  200 (243)
T PF07250_consen  197 KTNT  200 (243)
T ss_pred             CCCe
Confidence            8774

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=82.93  E-value=46  Score=32.01  Aligned_cols=257  Identities=9%  Similarity=0.058  Sum_probs=123.5

Q ss_pred             eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCc-CCCCCceEEEecCCCeeEEEEeCCC--CceEEEEecCC-eE
Q psy17342         68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTK-FKKTTPEFEFFCQSPVLSCCFAKFN--PYLILGGTYSG-QI  143 (401)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~g~~dg-~v  143 (401)
                      +.+..++|+...+-.|-          +...|--|=+. +.+.+-.+.+....-|.||......  ..+.+.|-.++ .-
T Consensus        30 ~vs~~~s~~sn~IdiGI----------S~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~   99 (670)
T PF10395_consen   30 QVSDDFSPDSNQIDIGI----------SGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKF   99 (670)
T ss_pred             eeecccCCCCceEEEEe----------ccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCee
Confidence            33447888887776666          45555555543 2333433444456678888775432  23555553443 34


Q ss_pred             EEEECCCCCCC-------ceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccc--cc
Q psy17342        144 VLWDTRVQKKT-------PVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY--NN  214 (401)
Q Consensus       144 ~iw~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--~~  214 (401)
                      ++-.+..+...       ........+ .-.+.|-.+.+  .+++..+++.-.+|.|.+||..... ......+..  ..
T Consensus       100 ~ll~i~~~~~~~~~~~~~~e~~~~~~~-kl~~kvv~Ik~--~~~~~~I~vvl~nG~i~~~d~~~~~-l~~~~~l~~~~~~  175 (670)
T PF10395_consen  100 KLLLIERKVGSTEDGTVNSETTNEFEL-KLDDKVVGIKF--SSDGKIIYVVLENGSIQIYDFSENS-LEKVPQLKLKSSI  175 (670)
T ss_pred             EEEEEEccCccccccccCccccceEEE-EcccceEEEEE--ecCCCEEEEEEcCCcEEEEeccccc-ccccccccccccc
Confidence            44444333000       000000111 23567888888  7889999999999999999993211 111111111  00


Q ss_pred             ccCCccceEEEEeccCCCCeEEEEcC-C---ceEEEEeCCCCCCCceeeec---CCCCceeeeecCccCCCCCCCcEEEE
Q psy17342        215 KQTKNLAVLSLAFPQNDVNNFVVGCE-D---GNVYSACRHGNKAGNVECYE---GHEGPVVGLSSHRAQGHIDFSHLYLT  287 (401)
Q Consensus       215 ~~~~~~~v~~~~~~~~~~~~l~~~~~-d---~~i~~~~~~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~~~~~~l~s  287 (401)
                      ...+..-|.....- ....++++-+. +   -..+++.+..... .+..+.   .+........|+-..     |.+..-
T Consensus       176 ~v~ys~fv~~~~~~-~~~~~ll~v~~~~~~k~~ykL~~l~~~~~-~~~El~s~~~e~~~~~~s~f~Y~~-----G~LY~l  248 (670)
T PF10395_consen  176 NVSYSKFVNDFELE-NGKDLLLTVSQLSNSKLSYKLISLSNESS-SIFELSSTILENFGLEDSKFCYQF-----GKLYQL  248 (670)
T ss_pred             ceehhhhhcccccc-cCCceEEEEEEcCCCcEEEEEEEeccCCc-ceEEeehheeccCCcccceEEEeC-----CEEEEE
Confidence            00011111111111 11233333332 2   2356676622121 122221   111112222222221     333333


Q ss_pred             EeCCCeEEEEEeeCCCceEEEeec----C--CceEEEE-ECCCCCcEEEEEecCCEEEEEeCCCCCCCcce
Q psy17342        288 SSYDWSVKLWNIKENKPVHSFNEF----R--DYVMDVQ-WSPINPALFATVEVAGRVDLWNLNLDTEVPAT  351 (401)
Q Consensus       288 ~~~d~~i~iwd~~~~~~~~~~~~~----~--~~v~~v~-~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  351 (401)
                        .+++|.+|++...+...++.-.    .  ..+.++. .+|+  ++|.+.  ++.|++.|+.-...+..+
T Consensus       249 --~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~n--RvLLs~--~nkIyLld~~~~siLse~  313 (670)
T PF10395_consen  249 --SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPSPN--RVLLSV--NNKIYLLDLKFESILSEF  313 (670)
T ss_pred             --eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCCCC--eEEEEc--CCEEEEEeehhhhhhhhh
Confidence              5789999999877766665532    1  1233333 2333  356554  669999998765544443

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=82.49  E-value=51  Score=32.22  Aligned_cols=97  Identities=16%  Similarity=0.182  Sum_probs=50.9

Q ss_pred             EEEeccCCCCeEEEEcCCc-----eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        224 SLAFPQNDVNNFVVGCEDG-----NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       224 ~~~~~~~~~~~l~~~~~d~-----~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      .++|- |.|..+++-..||     .|..+..++-.......-.+-...+..++|+-.      ...++. ...+.+.+|-
T Consensus       251 ~LSWk-pqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~------s~vlav-~~~n~~~lwt  322 (1243)
T COG5290         251 QLSWK-PQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLL------STVLAV-AEGNLLKLWT  322 (1243)
T ss_pred             ccccc-cCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHH------HHHHHH-hhcceEEEEE
Confidence            47888 7888888765444     366665544322111111223344566777655      334433 3467899997


Q ss_pred             eeCCCceEEEeecCCceEEEEECCCCCcEE
Q psy17342        299 IKENKPVHSFNEFRDYVMDVQWSPINPALF  328 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l  328 (401)
                      ..+-.-.......-..+.-+.|+|.....+
T Consensus       323 tkNyhWYLK~e~~ip~~s~vkwhpe~~nTl  352 (1243)
T COG5290         323 TKNYHWYLKVERQIPGISYVKWHPEEKNTL  352 (1243)
T ss_pred             ccceEEEEEEeecCCCcceeeeccccCcEE
Confidence            654321111112233456678888754333

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=82.31  E-value=41  Score=30.93  Aligned_cols=109  Identities=11%  Similarity=0.116  Sum_probs=59.7

Q ss_pred             CceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc--eEEEe-----ecCCceEEEEECCCC------CcEEEEE
Q psy17342        265 GPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP--VHSFN-----EFRDYVMDVQWSPIN------PALFATV  331 (401)
Q Consensus       265 ~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~-----~~~~~v~~v~~~~~~------~~~l~~~  331 (401)
                      ..-..|+|.|+      +++|++--..|+|++++..++..  +..+.     ...+....|+++|+-      ++++++-
T Consensus        30 ~~Pw~maflPD------G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsy  103 (454)
T TIGR03606        30 NKPWALLWGPD------NQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISY  103 (454)
T ss_pred             CCceEEEEcCC------CeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEE
Confidence            34578999998      67777765469999997654322  21111     125678899999874      2234432


Q ss_pred             ec---------CCEEEEEeCCCC--CCC--c-ceEEe-ecCCCCeEEEEecCCCcEEEEEecC
Q psy17342        332 EV---------AGRVDLWNLNLD--TEV--P-ATSAI-VEGAPALSRVTWTPNGTQLCVGDEK  379 (401)
Q Consensus       332 ~~---------d~~i~iwd~~~~--~~~--~-~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~d  379 (401)
                      +.         ...|.-|.+...  ...  . .+... ....+.-..|+|.|||.+.++.++.
T Consensus       104 t~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       104 TYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             eccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence            21         233444544321  111  1 11110 0112334568899999877655544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=81.21  E-value=12  Score=25.00  Aligned_cols=32  Identities=13%  Similarity=0.287  Sum_probs=26.5

Q ss_pred             CceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        313 DYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       313 ~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      ...+.|.++|+++.++++....+.|++|....
T Consensus        54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            45678999999998888888889999998753

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=80.01  E-value=36  Score=28.92  Aligned_cols=99  Identities=16%  Similarity=0.183  Sum_probs=56.5

Q ss_pred             CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEe------cCCeEEEEECCCCCCCceeeccccccCCCC
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGT------YSGQIVLWDTRVQKKTPVHRTPLSVMAHTH  168 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  168 (401)
                      ....|++||..+.+-. .....-.+.|++|.|.. +..+++.|.      ....+..||+.+..-...... . -..-.+
T Consensus        14 ~C~~lC~yd~~~~qW~-~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~-~-s~~ipg   89 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWS-SPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGG-S-SNSIPG   89 (281)
T ss_pred             CCCEEEEEECCCCEee-cCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCc-c-cccCCC
Confidence            4678999998854322 11122367899999985 346777774      355688899887654221110 0 012347


Q ss_pred             cEEEEEEeecCCceEEEEEe-CCC--cEEEee
Q psy17342        169 PVFCMSVIGTQNAHNLISIS-NDG--RLCSWS  197 (401)
Q Consensus       169 ~v~~~~~~~~~~~~~l~s~~-~dg--~i~~wd  197 (401)
                      +|..+.+......+..+.|. .+|  .|..||
T Consensus        90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d  121 (281)
T PF12768_consen   90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYD  121 (281)
T ss_pred             cEEEEEeeccCCceEEEeceecCCCceEEEEc
Confidence            88888774223333444443 333  355555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	401
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		5e-08
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		6e-08
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		7e-08
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-06
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		6e-06
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		9e-06
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		4e-05
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-04
2oit_A	434	Crystal Structure Of The N-Terminal Domain Of The H		3e-04
3fmo_A	450	Crystal Structure Of The Nucleoporin Nup214 In Comp		4e-04
3fhc_A	405	Crystal Structure Of Human Dbp5 In Complex With Nup		4e-04

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 23/201 (11%)
Query: 184 LISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS-LAFPQNDVNNFVVGCEDG 242
           L+S S+D  +C W +   ++P+E R +   N  T + AV+  +A+     + F    +D 
Sbjct: 201 LLSASDDHTICLWDIN--ATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ 258
Query: 243 NVYS-ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL-TSSYDWSVKLWNIK 300
            +     R+ N +      + H   V  LS +       +S   L T S D +V LW+++
Sbjct: 259 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP------YSEFILATGSADKTVALWDLR 312
Query: 301 ENK-PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAP 359
             K  +HSF   +D +  VQWSP N  + A+     R+ +W+L+   E  +T    +G P
Sbjct: 313 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 372
Query: 360 AL-----------SRVTWTPN 369
            L           S  +W PN
Sbjct: 373 ELLFIHGGHTAKISDFSWNPN 393

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 23/201 (11%)
Query: 184 LISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS-LAFPQNDVNNFVVGCEDG 242
           L+S S+D  +C W +   ++P+E R +   N  T + AV+  +A+     + F    +D 
Sbjct: 199 LLSASDDHTICLWDIN--ATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ 256
Query: 243 NVYS-ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL-TSSYDWSVKLWNIK 300
            +     R+ N +      + H   V  LS +       +S   L T S D +V LW+++
Sbjct: 257 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP------YSEFILATGSADKTVALWDLR 310
Query: 301 ENK-PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAP 359
             K  +HSF   +D +  VQWSP N  + A+     R+ +W+L+   E  +T    +G P
Sbjct: 311 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 370
Query: 360 AL-----------SRVTWTPN 369
            L           S  +W PN
Sbjct: 371 ELLFIHGGHTAKISDFSWNPN 391

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 23/201 (11%)
Query: 184 LISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS-LAFPQNDVNNFVVGCEDG 242
           L+S S+D  +C W +   ++P+E R +   N  T + AV+  +A+     + F    +D 
Sbjct: 197 LLSASDDHTICLWDIN--ATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ 254
Query: 243 NVYS-ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL-TSSYDWSVKLWNIK 300
            +     R+ N +      + H   V  LS +       +S   L T S D +V LW+++
Sbjct: 255 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP------YSEFILATGSADKTVALWDLR 308
Query: 301 ENK-PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAP 359
             K  +HSF   +D +  VQWSP N  + A+     R+ +W+L+   E  +T    +G P
Sbjct: 309 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 368
Query: 360 AL-----------SRVTWTPN 369
            L           S  +W PN
Sbjct: 369 ELLFIHGGHTAKISDFSWNPN 389

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 107/263 (40%), Gaps = 36/263 (13%)
Query: 130 NPYLILGGTYSGQIVLWDTRVQKKTPVHRTP-------LSVMAHTHPVFCMSVIGTQNAH 182
           NP +I   T S  ++++D     K P    P       L +  H    + +S     + H
Sbjct: 136 NPCIIATKTPSSDVLVFD---YTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGH 192
Query: 183 NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL---SLAFPQNDVNNFVVGC 239
            L+S S+D  +C W +  +  P+E + +      T + AV+   S       +   V   
Sbjct: 193 -LLSASDDHTICLWDISAV--PKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADD 249
Query: 240 EDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL-TSSYDWSVKLWN 298
           +   ++   R  N +      + H   V  LS +       +S   L T S D +V LW+
Sbjct: 250 QKLMIWD-TRSNNTSKPSHSVDAHTAEVNCLSFNP------YSEFILATGSADKTVALWD 302
Query: 299 IKENK-PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG 357
           ++  K  +HSF   +D +  VQWSP N  + A+     R+++W+L+   E  +     +G
Sbjct: 303 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDG 362
Query: 358 APAL-----------SRVTWTPN 369
            P L           S  +W PN
Sbjct: 363 PPELLFIHGGHTAKISDFSWNPN 385

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 114/291 (39%), Gaps = 51/291 (17%)
Query: 130 NPYLILGGTYSGQIVLWDTRVQKKTPVHRTP-------LSVMAHTHPVFCMSVIGTQNAH 182
           NP++I   T S  ++++D     K P    P       L +  H    + +S     + H
Sbjct: 138 NPHIIATKTPSSDVLVFD---YTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGH 194
Query: 183 NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL----------SLAFPQNDV 232
            L+S S+D  +C W +   + P+E + +      T + AV+          SL     D 
Sbjct: 195 -LLSASDDHTVCLWDIN--AGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADD 251
Query: 233 NNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL-TSSYD 291
              ++     N  S   H          + H   V  LS +       +S   L T S D
Sbjct: 252 QKLMIWDTRSNTTSKPSH--------LVDAHTAEVNCLSFNP------YSEFILATGSAD 297
Query: 292 WSVKLWNIKENK-PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA 350
            +V LW+++  K  +H+F   +D +  V WSP N  + A+     R+++W+L+   E  +
Sbjct: 298 KTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQS 357
Query: 351 TSAIVEGAPAL-----------SRVTWTPNGT-QLCVGDEKGAITMFDVGE 389
                +G P L           S  +W PN    +C   E   + ++ + E
Sbjct: 358 AEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAE 408

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 108/262 (41%), Gaps = 34/262 (12%)
Query: 130 NPYLILGGTYSGQIVLWDTRVQKKTPVHRTP-------LSVMAHTHPVFCMSVIGTQNAH 182
           NP++I   T S  ++++D     K P    P       L +  H    + +S     + H
Sbjct: 138 NPHIIATKTPSSDVLVFD---YTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGH 194
Query: 183 NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS-LAFPQNDVNNFVVGCED 241
            L+S S+D  +C W +   + P+E + +      T + AV+  +A+     + F    +D
Sbjct: 195 -LLSASDDHTVCLWDIN--AGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADD 251
Query: 242 GNVYS-ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL-TSSYDWSVKLWNI 299
             +     R    +      + H   V  LS +       +S   L T S D +V LW++
Sbjct: 252 QKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNP------YSEFILATGSADKTVALWDL 305
Query: 300 KENK-PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGA 358
           +  K  +H+F   +D +  V WSP N  + A+     R+++W+L+   E  +     +G 
Sbjct: 306 RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGP 365
Query: 359 PAL-----------SRVTWTPN 369
           P L           S  +W PN
Sbjct: 366 PELLFIHGGHTAKISDFSWNPN 387

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 98/226 (43%), Gaps = 32/226 (14%)
Query: 168 HPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNN-KQTKNLAVLSLA 226
           H  F   V  + N +  +S S D  L  W+L+           QY     TK+  VLS+A
Sbjct: 66  HSAFVSDVALSNNGNFAVSASWDHSLRLWNLQ-------NGQCQYKFLGHTKD--VLSVA 116
Query: 227 FPQNDVNNFVVGCEDG-----NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDF 281
           F   D    V G  D      NV   C H    G       H   V   S  R    +D 
Sbjct: 117 FSP-DNRQIVSGGRDNALRVWNVKGECMHTLSRG------AHTDWV---SCVRFSPSLD- 165
Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
           + + ++  +D  VK+W++   + V       +YV  V  SP + +L A+ +  G   LW+
Sbjct: 166 APVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP-DGSLCASSDKDGVARLWD 224
Query: 342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
           L   T+  A S +  GAP ++++ ++PN   +C   EKG I +FD+
Sbjct: 225 L---TKGEALSEMAAGAP-INQICFSPNRYWMCAATEKG-IRIFDL 265

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 112/266 (42%), Gaps = 37/266 (13%)
Query: 130 NPYLILGGTYSGQIVLWD-TRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS 188
           N  +I+  +    I+LW  T+  K   V +  L+   H+H  F   V+ + +    +S S
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT--GHSH--FVEDVVLSSDGQFALSGS 449
Query: 189 NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG-----N 243
            DG L  W L   ++   TR    + K      VLS+AF   D    V    D      N
Sbjct: 450 WDGELRLWDL---AAGVSTRRFVGHTKD-----VLSVAFSL-DNRQIVSASRDRTIKLWN 500
Query: 244 VYSACRHGNKAGNVECYEGHEGPV--VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE 301
               C++    G     EGH   V  V  S +  Q  I      +++S+D +VK+WN+  
Sbjct: 501 TLGECKYTISEGG----EGHRDWVSCVRFSPNTLQPTI------VSASWDKTVKVWNLSN 550
Query: 302 NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPAL 361
            K   +      YV  V  SP + +L A+    G V LW+L    ++ +    +E    +
Sbjct: 551 CKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYS----LEANSVI 605
Query: 362 SRVTWTPNGTQLCVGDEKGAITMFDV 387
             + ++PN   LC   E G I ++D+
Sbjct: 606 HALCFSPNRYWLCAATEHG-IKIWDL 630

>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Proto-Oncogene Nup214CAN Length = 434

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 278 HIDFSHLYLTSSYDWSVKLWNIK--------ENKPVHSFNEFRD---YVMDVQWSPINPA 326
           ++  S   ++S Y   +  ++++        + +P       +D    V+D++W+P  P+
Sbjct: 104 NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS 163
Query: 327 LFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMF 385
           + A     G + +  +   TE     A +    A++ V W+P G QL VG + G +  +
Sbjct: 164 MVAVCLADGSIAVLQV---TETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQY 219

>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 450

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 278 HIDFSHLYLTSSYDWSVKLWNIK--------ENKPVHSFNEFRD---YVMDVQWSPINPA 326
           ++  S   ++S Y   +  ++++        + +P       +D    V+D++W+P  P+
Sbjct: 104 NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS 163
Query: 327 LFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMF 385
           + A     G + +  +   TE     A +    A++ V W+P G QL VG + G +  +
Sbjct: 164 MVAVCLADGSIAVLQV---TETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQY 219

>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214 Length = 405

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 278 HIDFSHLYLTSSYDWSVKLWNIK--------ENKPVHSFNEFRD---YVMDVQWSPINPA 326
           ++  S   ++S Y   +  ++++        + +P       +D    V+D++W+P  P+
Sbjct: 104 NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS 163
Query: 327 LFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMF 385
           + A     G + +  +   TE     A +    A++ V W+P G QL VG + G +  +
Sbjct: 164 MVAVCLADGSIAVLQV---TETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQY 219

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	401
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	2e-18
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	6e-17
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	2e-11
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	2e-10
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	2e-09
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	6e-16
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	1e-09
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	5e-06
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	3e-14
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	4e-04
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	3e-12
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-11
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-10
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-07
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	9e-06
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-05
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	2e-10
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	8e-10
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	4e-10
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	1e-05
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	2e-09
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	1e-07
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	4e-07
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	8e-07
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	2e-09
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	4e-09
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	7e-07
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	7e-04
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	6e-08
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	2e-07
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-07
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-05
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	4e-05
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	5e-05
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	3e-07
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	2e-04
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	3e-07
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	1e-04
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	4e-07
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	2e-05
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	6e-07
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	8e-04
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	7e-07
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	3e-06
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	4e-04
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	1e-06
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	4e-04
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	1e-06
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	1e-06
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	2e-06
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	7e-06
2pm7_B	297	Protein transport protein SEC13, protein transport	3e-06
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	3e-06
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	5e-06
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	8e-06
3jro_A	753	Fusion protein of protein transport protein SEC13	1e-05
3jro_A	753	Fusion protein of protein transport protein SEC13	3e-04
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	1e-05
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	1e-05
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	2e-05
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	1e-05
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	1e-05
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	3e-05
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	3e-05
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	2e-04
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	2e-04
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	8e-04
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	2e-05
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	4e-05
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	4e-05
3jrp_A	379	Fusion protein of protein transport protein SEC13	5e-05
3jrp_A	379	Fusion protein of protein transport protein SEC13	1e-04
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	6e-05
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	2e-04
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	1e-04
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	1e-04
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	6e-04
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	1e-04
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	4e-04
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	2e-04
3ow8_A	321	WD repeat-containing protein 61; structural genomi	3e-04
3ow8_A	321	WD repeat-containing protein 61; structural genomi	6e-04
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	3e-04
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	5e-04
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	7e-04
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	8e-04

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434

 Score = 85.3 bits (210), Expect = 2e-18
 Identities = 34/222 (15%), Positives = 76/222 (34%), Gaps = 37/222 (16%)

Query: 198 LEMLSSPQETRDLQYNNKQTKNLAVLS--LAFPQNDVNNFVVGCEDGNVYSACRHGNKAG 255
           ++ +   +E +D Q+  +  K + +       P+   +   V  + G V++    G +  
Sbjct: 5   MDAMIPEREMKDFQF--RALKKVRIFDSPEELPKERSSLLAVSNKYGLVFAGGASGLQIF 62

Query: 256 NVE-------CYEGHEGPVVGLSSHRAQGHIDFSHL------------YLTSSYDWSVKL 296
             +         +     V  +            HL             ++S Y   +  
Sbjct: 63  PTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAF 122

Query: 297 WNIKE-----NKPVHSF------NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD 345
           ++++       +    F       +    V+D++W+P  P++ A     G + +  +   
Sbjct: 123 FDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET 182

Query: 346 TEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
            +V AT          + V W+P G QL VG + G +  +  
Sbjct: 183 VKVCATLPSTVAV---TSVCWSPKGKQLAVGKQNGTVVQYLP 221

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 80.9 bits (200), Expect = 6e-17
 Identities = 52/254 (20%), Positives = 94/254 (37%), Gaps = 15/254 (5%)

Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTP----VHRTPLSVMAHTHPVFCM 173
           +  V    +   N  +I   T S  ++++D       P      +  L +  H    + +
Sbjct: 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGL 187

Query: 174 SVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVN 233
           S         L+S S+D  +C W +          D +          V  +A+     +
Sbjct: 188 S-WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA-VVEDVAWHLLHES 245

Query: 234 NFVVGCEDGNV--YSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD 291
            F    +D  +  +   R+ N +      + H   V  LS +          +  T S D
Sbjct: 246 LFGSVADDQKLMIWDT-RNNNTSKPSHTVDAHTAEVNCLSFNP-----YSEFILATGSAD 299

Query: 292 WSVKLWNI-KENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA 350
            +V LW++      +HSF   +D +  VQWSP N  + A+     R+ +W+L+   E  +
Sbjct: 300 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359

Query: 351 TSAIVEGAPALSRV 364
           T    +G P L  +
Sbjct: 360 TEDAEDGPPELLFI 373

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 32/188 (17%), Positives = 63/188 (33%), Gaps = 31/188 (16%)

Query: 221 AVLSLAFPQNDVNNFVVGCEDGNVY--------SACRHGNKAGNVECYEGHEGPVVGLS- 271
            V    +   +           +V         S      +        GH+    GLS 
Sbjct: 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSW 189

Query: 272 SHRAQGHIDFSHLYLTSSYDWSVKLWNI-------KENKPVHSFNEFRDYVMDVQWSPIN 324
           +    G++      L++S D ++ LW+I       +     + F      V DV W  ++
Sbjct: 190 NPNLNGYL------LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH 243

Query: 325 PALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSR----VTWTPNGTQLCV-GDEK 379
            +LF +V    ++ +W    DT    TS       A +     +++ P    +   G   
Sbjct: 244 ESLFGSVADDQKLMIW----DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD 299

Query: 380 GAITMFDV 387
             + ++D+
Sbjct: 300 KTVALWDL 307

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 45/334 (13%), Positives = 97/334 (29%), Gaps = 49/334 (14%)

Query: 36  DLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEP 95
              +D    E         +   + K +    V    +  Q+  ++             P
Sbjct: 99  GSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKT---------P 149

Query: 96  DGVCLIWNTKFKKTTPEFEFFCQ---------SPVLSCCFAKFNPYLILGGTYSGQIVLW 146
               L+++     + PE    CQ                +       +L  +    I LW
Sbjct: 150 SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLW 209

Query: 147 D-TRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQ 205
           D     K+  V         HT  V  ++     +     S+++D +L  W     ++ +
Sbjct: 210 DINATPKEHRVIDAKNIFTGHTAVVEDVA-WHLLHESLFGSVADDQKLMIWDTRNNNTSK 268

Query: 206 ETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNV--YSACRHGNKAGNVECYEGH 263
            +  +  +        V  L+F          G  D  V  +   R+      +  +E H
Sbjct: 269 PSHTVDAHTA-----EVNCLSFNPYSEFILATGSADKTVALWDL-RNLKLK--LHSFESH 320

Query: 264 EGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEF------------ 311
           +  +  +     Q       +  +S  D  + +W++ +     S  +             
Sbjct: 321 KDEIFQV-----QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 375

Query: 312 --RDYVMDVQWSPINPALFATVEVAGRVDLWNLN 343
                + D  W+P  P +  +V     + +W + 
Sbjct: 376 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 37/256 (14%), Positives = 77/256 (30%), Gaps = 43/256 (16%)

Query: 65  NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTK-----FKKTTPEFEFFC-Q 118
            +    + W+      LL++           D    +W+        +    +  F    
Sbjct: 181 QKEGYGLSWNPNLNGYLLSASD---------DHTICLWDINATPKEHRVIDAKNIFTGHT 231

Query: 119 SPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGT 178
           + V    +   +  L        ++++WDTR    +    T   V AHT  V C+S    
Sbjct: 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT---VDAHTAEVNCLS-FNP 287

Query: 179 QNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVG 238
            +   L + S D  +  W L  L     +   + +        +  + +  ++       
Sbjct: 288 YSEFILATGSADKTVALWDLRNLKLKLHS--FESHKD-----EIFQVQWSPHNETILASS 340

Query: 239 CEDGNV----YSACRHGNKAGNVECY--------EGHEGPVVGLSSHRAQGHIDFSHLYL 286
             D  +     S         + E           GH   +   S +      +   +  
Sbjct: 341 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-----NEPWIIC 395

Query: 287 TSSYDWSVKLWNIKEN 302
           + S D  +++W + EN
Sbjct: 396 SVSEDNIMQVWQMAEN 411

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 77.8 bits (192), Expect = 6e-16
 Identities = 43/268 (16%), Positives = 84/268 (31%), Gaps = 28/268 (10%)

Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDT---RVQKKTPVHRTPLSVMAHTHPVFCMS 174
            S V +  F      ++  G  +G+I +WD              TP   M+    V  ++
Sbjct: 113 SSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172

Query: 175 VIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK-NLAVLSLAF-PQNDV 232
                 AH   S  +      W L+   + +E   L Y +  +     +  + + P    
Sbjct: 173 -WNQSLAHVFASAGSSNFASIWDLK---AKKEVIHLSYTSPNSGIKQQLSVVEWHP--KN 226

Query: 233 NNFVVGCEDGNVYSACR----HGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS----HL 284
           +  V      +   +                 +GH+  ++ L          +     HL
Sbjct: 227 STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLD---------WCHQDEHL 277

Query: 285 YLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL 344
            L+S  D +V LWN +  + +  F    ++    +++P  P LFA      ++++  L  
Sbjct: 278 LLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337

Query: 345 DTEVPATSAIVEGAPALSRVTWTPNGTQ 372
            T                   W     +
Sbjct: 338 LTNTLDEQETETKQQESETDFWNNVSRE 365

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 29/243 (11%), Positives = 70/243 (28%), Gaps = 36/243 (14%)

Query: 118 QSPVLSCCFAKFNP--YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV 175
               L            +    +    + LW             P++ +          +
Sbjct: 23  DKIPLL---VSGTVSGTVDANFSTDSSLELWSL----LAADSEKPIASLQVDSKFN--DL 73

Query: 176 IGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNF 235
             + N   +    ++G L  +S     +      +   +  +   +V ++ F     N  
Sbjct: 74  DWSHNNKIIAGALDNGSLELYSTN--EANNAINSMARFSNHSS--SVKTVKFNAKQDNVL 129

Query: 236 VVGCEDGNVY-------SACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS 288
             G  +G ++       +                    V+ L+ +++  H+  S     +
Sbjct: 130 ASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFAS-----A 184

Query: 289 SYDWSVKLWNIKENKPVHSFNEF------RDYVMDVQWSPINPALFATVEVAGR---VDL 339
                  +W++K  K V   +        +  +  V+W P N    AT   +     + +
Sbjct: 185 GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILI 244

Query: 340 WNL 342
           W+L
Sbjct: 245 WDL 247

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 42/289 (14%), Positives = 90/289 (31%), Gaps = 33/289 (11%)

Query: 101 IWNTKFKKTTPEFEFF-CQSPVLSCCFAKFNPYLILGGTYSGQIVLWD--TRVQKKTPVH 157
           +W+     +          S      ++  N  +  G   +G + L+           + 
Sbjct: 49  LWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIA-GALDNGSLELYSTNEANNAINSMA 107

Query: 158 RTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT 217
           R       H+  V  +     Q+ + L S  N+G +  W +   +            +  
Sbjct: 108 RFS----NHSSSVKTVKFNAKQD-NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM 162

Query: 218 KNLA-VLSLAFPQNDVNNFVVGCEDGNV----YSACRHGNKAGNVECYEGHEGPVVGLSS 272
            ++  V+SLA+ Q+  + F               A +            G +  +  +  
Sbjct: 163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW 222

Query: 273 HRAQGHIDFSHLYLTSS---YDWSVKLWNIKE-NKPVHSFNE-FRDYVMDVQWSPINPAL 327
           H        S    T++    D S+ +W+++  N P+ + N+  +  ++ + W   +  L
Sbjct: 223 HP-----KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL 277

Query: 328 FATVEVAGRVDLWNLN---LDTEVPATSAIVEGAPALSRVTWTPNGTQL 373
             +      V LWN       ++ PA               + P    L
Sbjct: 278 LLSSGRDNTVLLWNPESAEQLSQFPARGNWCFK------TKFAPEAPDL 320

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 46/270 (17%), Positives = 80/270 (29%), Gaps = 34/270 (12%)

Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG 177
              V S  +   +P  +  G+  G I+LWD  VQ KT   +     M     +  M    
Sbjct: 73  DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ----GMGPGDAITGMK-FN 127

Query: 178 TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV 237
             N + L   S  G          S  Q        +          +            
Sbjct: 128 QFNTNQLFVSSIRGATTLRDFS-GSVIQVFAKTDSWDY-----WYCCVDVS-VSRQMLAT 180

Query: 238 GCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS----HLYLTSSYDWS 293
           G   G +      G     +   + H+  V          H +F+     L  TSS D +
Sbjct: 181 GDSTGRLL---LLGLDGHEIFKEKLHKAKV---------THAEFNPRCDWLMATSSVDAT 228

Query: 294 VKLWNIKENKPVHSFNEF---RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA 350
           VKLW+++  K  +S+         V    ++P +     T +    + +++    ++   
Sbjct: 229 VKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ 288

Query: 351 T---SAIVEGAPALSRVTWTPNGTQLCVGD 377
                          + TW P    +  G 
Sbjct: 289 IIIHPHRQFQHLTPIKATWHPMYDLIVAGR 318

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 36/194 (18%), Positives = 71/194 (36%), Gaps = 25/194 (12%)

Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMS--- 174
           ++ V    F     +L+   +    + LWD R  K      + ++ M H  PV       
Sbjct: 204 KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN---SYIAEMPHEKPVNAAYFNP 260

Query: 175 VIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF-PQNDVN 233
              T+    L++      +  +S    S P +   + + ++Q ++L  +   + P  D+ 
Sbjct: 261 TDSTK----LLTTDQRNEIRVYSSYDWSKPDQI--IIHPHRQFQHLTPIKATWHPMYDLI 314

Query: 234 NFVVGCEDGNVYSACRHGNKAGNVECYEGHEG-PVVGLSSHRAQGHI---DFSH--LYLT 287
                  D  +       N    ++ Y+ + G  V  L    A G I    FS     L 
Sbjct: 315 -VAGRYPDDQLL-----LNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLA 368

Query: 288 SSYDWSVKLWNIKE 301
           S   +++ +WN ++
Sbjct: 369 SGMGFNILIWNRED 382

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 67.6 bits (164), Expect = 3e-12
 Identities = 31/274 (11%), Positives = 81/274 (29%), Gaps = 66/274 (24%)

Query: 125 CFAKFNPY--LILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAH 182
             A F+    L+   T +G++ ++  +  +                 +  M  +      
Sbjct: 22  AAA-FDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-------DRSAIKEMRFV---KGI 70

Query: 183 NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG 242
            L+ I+    +   SL        ++ +           + S+      ++  ++G ++G
Sbjct: 71  YLVVINAKDTVYVLSL-------YSQKVLTTVFVPGK--ITSIDTDA-SLDWMLIGLQNG 120

Query: 243 NVY---------SACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWS 293
           ++          S+ +  N   +         P+V +  +            +  SY++ 
Sbjct: 121 SMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGT------VLISYEYV 174

Query: 294 VKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSA 353
              +++ EN+   SF                       E+       + +  T    T  
Sbjct: 175 TLTYSLVENEIKQSF---------------------IYELPPFAPGGDFSEKTNEKRT-- 211

Query: 354 IVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
                P + +  + PN   +    E  ++  +D 
Sbjct: 212 -----PKVIQSLYHPNSLHIITIHEDNSLVFWDA 240

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 56/306 (18%), Positives = 94/306 (30%), Gaps = 46/306 (15%)

Query: 96  DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFA-KFNPYLILGGTYSGQIVLWDTRVQKKT 154
           D    IW++   K    ++      V  C F  K N  L+  G+    + LWD       
Sbjct: 678 DKKVKIWDSATGKLVHTYDEH-SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL----NQ 732

Query: 155 PVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNN 214
              R  +    HT+ V       + +   L S S DG L  W +    S  E + +    
Sbjct: 733 KECRNTMF--GHTNSVNHCRF--SPDDELLASCSADGTLRLWDVR---SANERKSINVKR 785

Query: 215 KQTKNL--------AVLSLAF-PQNDVNNFVVGCEDGNVYSACRHGNKAGN--VECYEGH 263
               +          V   ++    D +  +V  ++                  E + GH
Sbjct: 786 FFLSSEDPPEDVEVIVKCCSWSA--DGDKIIVAAKNK----VLLFDIHTSGLLAEIHTGH 839

Query: 264 EGPV--VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWS 321
              +     S              + +   + V+LWNI     V        +V  V +S
Sbjct: 840 HSTIQYCDFSP-------YDHLA-VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS 891

Query: 322 PINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGA 381
           P + + F T      + +W      +V   SAIV        V +  N T +   D    
Sbjct: 892 P-DGSSFLTASDDQTIRVWETK---KVCKNSAIVLKQE--IDVVFQENETMVLAVDNIRG 945

Query: 382 ITMFDV 387
           + +   
Sbjct: 946 LQLIAG 951

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 43/298 (14%), Positives = 93/298 (31%), Gaps = 50/298 (16%)

Query: 96   DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTP 155
            D    +W TK      +         +   F +    ++        + L   +      
Sbjct: 903  DQTIRVWETK---KVCKNSAIVLKQEIDVVFQENETMVLAVD-NIRGLQLIAGK------ 952

Query: 156  VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNK 215
               T          V C  +  + +   +     DG +    L    + +       + K
Sbjct: 953  ---TGQIDYLPEAQVSCCCL--SPHLEYVAFGDEDGAIKIIELP---NNRVFSSGVGHKK 1004

Query: 216  QTKNLAVLSLAF-PQNDVNNFVVGCEDGNVY--SACRHGNKAGNVECYEGHEGPVVGLSS 272
                 AV  + F    D    +   ED  +   +      + G+    + H+  V     
Sbjct: 1005 -----AVRHIQFTA--DGKTLISSSEDSVIQVWNW-----QTGDYVFLQAHQETVKDFR- 1051

Query: 273  HRAQGHIDFSH--LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFAT 330
                           L+ S+D +VK+WN+   +    F   +  V+    S  +   F++
Sbjct: 1052 --------LLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSS 1102

Query: 331  VEVAGRVDLWNLNLDTEVPATSAIVEG-APALSRVTWTPNGTQLCVGDEKGAITMFDV 387
                    +W+ +L + +      ++G    +    ++ +G  L  GD+ G I +++V
Sbjct: 1103 TSADKTAKIWSFDLLSPL----HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 44/261 (16%), Positives = 78/261 (29%), Gaps = 51/261 (19%)

Query: 96   DGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFA---KFNPYLILGGTYSGQIVLWDTRVQ 151
            D V  +WN +   T         Q  V         +     +L  ++ G + +W+    
Sbjct: 1024 DSVIQVWNWQ---TGDYVFLQAHQETVKDFRLLQDSR-----LLSWSFDGTVKVWNV--- 1072

Query: 152  KKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQ 211
              T       +   H   V   ++  + +A    S S D     WS +         +L+
Sbjct: 1073 -ITGRIERDFT--CHQGTVLSCAI--SSDATKFSSTSADKTAKIWSFD---LLSPLHELK 1124

Query: 212  YNNKQTKNLAVLSLAF-PQNDVNNFVVGCEDGNV-------YSACRHGNKAGNVECYEGH 263
             +N       V   AF    D      G ++G +                    E    H
Sbjct: 1125 GHNG-----CVRCSAFSL--DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATH 1177

Query: 264  EGPVVGLSSHRAQGHIDFSH--LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWS 321
             G V  +          FS     L S+    +K WN+       +F      +  +  S
Sbjct: 1178 GGWVTDVC---------FSPDSKTLVSA-GGYLKWWNVATGDSSQTFYTNGTNLKKIHVS 1227

Query: 322  PINPALFATVEVAGRVDLWNL 342
            P +   + TV+  G + +  +
Sbjct: 1228 P-DFRTYVTVDNLGILYILQV 1247

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 47.1 bits (112), Expect = 9e-06
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 18/132 (13%)

Query: 261 EGHEGPVVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
           + HE  V+  +         FS       T S D  VK+W+    K VH+++E  + V  
Sbjct: 654 KAHEDEVLCCA---------FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNC 704

Query: 318 VQWSP-INPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG-APALSRVTWTPNGTQLCV 375
             ++   N  L AT      + LW+LN           + G   +++   ++P+   L  
Sbjct: 705 CHFTNKSNHLLLATGSNDFFLKLWDLNQKECR----NTMFGHTNSVNHCRFSPDDELLAS 760

Query: 376 GDEKGAITMFDV 387
               G + ++DV
Sbjct: 761 CSADGTLRLWDV 772

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 13/86 (15%)

Query: 261 EGHEGPVVGLSSHRAQGHIDFSH---LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
             H   V             FS       +   D +++++  +  + +       D V+ 
Sbjct: 612 RPHTDAVYHAC---------FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLC 662

Query: 318 VQWSPINPALFATVEVAGRVDLWNLN 343
             +S  + +  AT     +V +W+  
Sbjct: 663 CAFSS-DDSYIATCSADKKVKIWDSA 687

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 61.4 bits (148), Expect = 2e-10
 Identities = 35/355 (9%), Positives = 81/355 (22%), Gaps = 49/355 (13%)

Query: 24  EEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNR--------NVTYMDWST 75
            E +  +    + L+  + G+  +        +F      K R         VT + W  
Sbjct: 85  TEFENMIKLRTKRLKLLI-GEVDAEVSTGDKIEFPVLANGKRRGFIYNVGGLVTDIAWLN 143

Query: 76  QHPEL--------LLASYHRNKEAPNEP----------DGVCLIWNTKFKKTTPEFEFFC 117
                        L  +  +  + P                  I+               
Sbjct: 144 IEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTI 203

Query: 118 QSPVLSCCFAKFNPY--------LILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHT-- 167
                     K++           +   +  G I   +                 + T  
Sbjct: 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263

Query: 168 HPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF 227
                ++     +   ++    +G +  + L     P       Y+      +  +S A+
Sbjct: 264 LADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPS-----FYDQVHDSYILSVSTAY 318

Query: 228 PQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLT 287
              +         DG  Y                     +V +            + Y+ 
Sbjct: 319 SDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYC------PQIYSYIY 372

Query: 288 SSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNL 342
           S    S++    +    VH        +  +  S ++P +       G + + N 
Sbjct: 373 SDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHP-MVLAGSADGSLIITNA 426

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 59.5 bits (143), Expect = 8e-10
 Identities = 26/222 (11%), Positives = 67/222 (30%), Gaps = 9/222 (4%)

Query: 173 MSVIGTQNAHNLISISNDGRLCSWSLEMLS-SPQETRDLQYNNKQTKNLAVLSLAFPQND 231
           M     ++        +   +  + +   +    + + + ++  +  +L         + 
Sbjct: 165 MDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHL 224

Query: 232 VNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGH---IDFSHLYLTS 288
           V       ++G +       + A +V  ++  E P + LS   +             +  
Sbjct: 225 VGCLSFVSQEGTIN-FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCG 283

Query: 289 SYDWSVKLWNIKE-NKPVHSFNEFRDYVMDV--QWSPINPALFATVEVAGRVDLWNLNLD 345
             +  V  +++ +   P         Y++ V   +S     + +TV V G   ++N   D
Sbjct: 284 FKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK-D 342

Query: 346 TEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
                T+        L  V + P        D   ++     
Sbjct: 343 IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPS 384

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 38/171 (22%), Positives = 57/171 (33%), Gaps = 24/171 (14%)

Query: 221 AVLSLAF-PQNDVNNFVVGCEDGNV--YSACRHGNKAGNVECY---EGHEGPVVGLSSHR 274
            VL +A+ P ND N    G ED  V  +     G      E     EGH   V       
Sbjct: 83  PVLDIAWCPHND-NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV------- 134

Query: 275 AQGHIDFS----HLYLTSSYDWSVKLWNIKENKPVHSFNEF--RDYVMDVQWSPINPALF 328
             G + +     ++ L++  D  + +W++     V +       D +  V WS  + AL 
Sbjct: 135 --GIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALI 191

Query: 329 ATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK 379
            T     RV +      T V       EG        +   G  L  G  +
Sbjct: 192 CTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRP-VHAVFVSEGKILTTGFSR 241

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 49/314 (15%), Positives = 89/314 (28%), Gaps = 68/314 (21%)

Query: 96  DGVCLIWNTKFKKTTPEFEFFC--QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKK 153
               ++   K  +        C   +PVL   +   N  +I  G+    +++W+      
Sbjct: 57  GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116

Query: 154 TPVHRTPLSVM-AHTHPVFCMSVIGTQNAHN-LISISNDGRLCSWSLEMLSSPQETRDLQ 211
               R P+  +  HT  V    V     A N L+S   D  +  W +    +      L 
Sbjct: 117 VLPLREPVITLEGHTKRV--GIVAWHPTAQNVLLSAGCDNVILVWDVG---TGAAVLTLG 171

Query: 212 YNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNV--YSACRHGNKAGNVECYEGHEGP--- 266
            +        + S+ + ++        C D  V      R G      E    HEG    
Sbjct: 172 PDVHPD---TIYSVDWSRDG-ALICTSCRDKRVRVIEP-RKGTVVA--EKDRPHEGTRPV 224

Query: 267 -----------VVGLSSHRAQ-------------------GHI----------DFSHLYL 286
                        G S    +                                D + +YL
Sbjct: 225 HAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYL 284

Query: 287 TSSYDWSVKLWNIKENKP-VHSFNEFR--DYVMDVQWSPINPALFATVEVAGRVDLWNLN 343
               D S++ + I    P +H  + F   +    + + P         E+A R   + L+
Sbjct: 285 CGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIA-R--FYKLH 341

Query: 344 LDTEVPATSAIVEG 357
            + +    +  V  
Sbjct: 342 -ERKCEPIAMTVPR 354

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 57.5 bits (138), Expect = 2e-09
 Identities = 23/207 (11%), Positives = 63/207 (30%), Gaps = 18/207 (8%)

Query: 184 LISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGN 243
            +    DG L    L      +    +   N +T       ++      N  ++      
Sbjct: 51  CMCRCEDGALHFTQL---KDSKTITTITTPNPRTGGEHPAIISRG--PCNRLLLLYPGNQ 105

Query: 244 --VYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE 301
             +  +          E        ++ +  H    +   +  ++ +    ++   + ++
Sbjct: 106 ITILDS---KTNKVLREIEVDSANEIIYMYGH----NEVNTEYFIWADNRGTIGFQSYED 158

Query: 302 NKPVHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPA 360
           +      + +             +  L A     G +D++NL+   +  +   + E A  
Sbjct: 159 DSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKI 217

Query: 361 LSRVTWTPNGTQLCVGDEKGAITMFDV 387
              V +  NG  + V  ++  +  FD+
Sbjct: 218 KE-VKFADNGYWMVVECDQT-VVCFDL 242

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 51.7 bits (123), Expect = 1e-07
 Identities = 24/183 (13%), Positives = 58/183 (31%), Gaps = 18/183 (9%)

Query: 216 QTKNLAVLSLAFPQNDVNNFV--------VGCEDGNV-YSACRHGNKAGNVECYEGHEGP 266
           Q +N +     FP  ++N  +          CEDG + ++  +       +       G 
Sbjct: 24  QAQNYSRNIKTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGG 83

Query: 267 VVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN-EFRDYVMDVQWSP-IN 324
                  R   +       L       + + + K NK +     +  + ++ +     +N
Sbjct: 84  EHPAIISRGPCNR-----LLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVN 138

Query: 325 PALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITM 384
              F   +  G +   +   D++    SA  +     S      +   L +    G + +
Sbjct: 139 TEYFIWADNRGTIGFQSYEDDSQYIVHSA--KSDVEYSSGVLHKDSLLLALYSPDGILDV 196

Query: 385 FDV 387
           +++
Sbjct: 197 YNL 199

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 50.5 bits (120), Expect = 4e-07
 Identities = 31/259 (11%), Positives = 70/259 (27%), Gaps = 37/259 (14%)

Query: 95  PDGVCLIWNTKFKKTTPEFEFF-CQSPVLSCCFAKFNP--YLILGGTYSGQIVLWDTRVQ 151
            DG       K  KT         ++           P   L+L      QI + D++  
Sbjct: 56  EDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYP-GNQITILDSKTN 114

Query: 152 KKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQ 211
           K               + +  M      N    I   N G   +   +      +     
Sbjct: 115 KVLREIEVD-----SANEIIYMYGHNEVNTEYFIWADNRG---TIGFQSYEDDSQYIVHS 166

Query: 212 YNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNV--YSACRHGNKAGNVECYEGHEGPVVG 269
             +         S      D     +   DG +  Y+     ++A +       E  +  
Sbjct: 167 AKSDV----EYSSGVL-HKDSLLLALYSPDGILDVYNL-SSPDQASSRF-PVDEEAKIKE 219

Query: 270 LSSHRAQGHIDFSH--LYLTSSYDWSVKLWNIKENK-----PVHSFNEFRDYVMDVQWSP 322
           +          F+    ++    D +V  ++++++      P ++  EF+   +      
Sbjct: 220 VK---------FADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD 270

Query: 323 INPALFATVEVAGRVDLWN 341
               + A    +  + ++ 
Sbjct: 271 SGKNMIAYSNESNSLTIYK 289

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 49.4 bits (117), Expect = 8e-07
 Identities = 22/252 (8%), Positives = 63/252 (25%), Gaps = 31/252 (12%)

Query: 133 LILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR 192
           + +     G +         K     T ++           ++I     + L+ +    +
Sbjct: 50  VCMCRCEDGALHFTQL----KDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQ 105

Query: 193 LCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNN-FVVGCEDGNVYSACRHG 251
           +         + +  R+++ ++       ++ +          F+     G +    +  
Sbjct: 106 ITILDS---KTNKVLREIEVDSANE----IIYMYGHNEVNTEYFIWADNRGTI--GFQSY 156

Query: 252 NKAGNVECYEGHEGPVVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLWNIKENKPVHSF 308
                   +                          L    S D  + ++N+       S 
Sbjct: 157 EDDSQYIVHSAKSDVEYS--------SGVLHKDSLLLALYSPDGILDVYNLSSPDQASSR 208

Query: 309 NEF--RDYVMDVQWSPINPALFATVEVAGRVDLWNL--NLDTEVPATSAIVEGAPALSRV 364
                   + +V+++  N            V  ++L  ++ T    T  I E        
Sbjct: 209 FPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTY 266

Query: 365 TWTPNGTQLCVG 376
               +G  +   
Sbjct: 267 DIDDSGKNMIAY 278

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 50/311 (16%), Positives = 99/311 (31%), Gaps = 46/311 (14%)

Query: 96  DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNP--YLILGGTYSGQIVLWDTRVQKK 153
            GV  ++  +        E     P+    F   +     +  G + G + +W+  ++  
Sbjct: 43  TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN--LEAP 100

Query: 154 TPVHRTPLSVMAHTHPVFCMSVIGTQ----NAHNLISISNDGRLCSWSLEMLSSPQET-R 208
                +   V  H   +  +  IG       A  +++ S DG +  W       P     
Sbjct: 101 EMPVYS---VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME 157

Query: 209 DLQYNNKQTKNLAVLSLAF-PQNDVNNFVVGCEDGNV--YSACRHGNKAGNVECYEGHEG 265
            +Q  NK+         A+    +      G ++G++  +       +   +      + 
Sbjct: 158 PVQGENKRDCWTVAFGNAYNQ--EERVVCAGYDNGDIKLFDL-----RNMALRWETNIKN 210

Query: 266 PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEF-----RDYVMDVQW 320
            V  L   R +  I  + L + +S +    +++++   P   F        +  V  V+ 
Sbjct: 211 GVCSLEFDR-KD-ISMNKL-VATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH 267

Query: 321 SPINPALFATVEVAGRVDLWNLNLDTE--VPATSAIVEGAPALSR--------------V 364
            P N  LF T   AG + LW      +     +  I  G                    +
Sbjct: 268 LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSL 327

Query: 365 TWTPNGTQLCV 375
            W+P+   LCV
Sbjct: 328 DWSPDKRGLCV 338

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 56.4 bits (136), Expect = 4e-09
 Identities = 33/215 (15%), Positives = 72/215 (33%), Gaps = 19/215 (8%)

Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHP--VFCMSV 175
           ++ +  C   K+    ++  ++ G I + D R      +    L+         +F M  
Sbjct: 99  EANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158

Query: 176 IGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNF 235
             ++    LI   N+ ++  + L +      T +      Q     +  +A    +   +
Sbjct: 159 NSSR----LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQ-----IRDVALLPKEQEGY 209

Query: 236 VVGCEDGNVYSAC----RHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLY---LTS 288
                DG V             +     +  H   +   +       I+FS  +    T+
Sbjct: 210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA 269

Query: 289 SYDWSVKLWNIKENKPVHSFNEF-RDYVMDVQWSP 322
             D  +  WN++  K + +F +F  D V+ +  S 
Sbjct: 270 GSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD 304

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 49.8 bits (119), Expect = 7e-07
 Identities = 39/268 (14%), Positives = 74/268 (27%), Gaps = 38/268 (14%)

Query: 96  DGVCLIWN--TKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWD--TRVQ 151
           DG   ++    + K          + P+L C F       I  GT  G+I+  D      
Sbjct: 32  DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS 91

Query: 152 KKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQ 211
            +   +        +   +  +  I       LI+ S DG +                  
Sbjct: 92  FQALTN--------NEANL-GICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL 142

Query: 212 YNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVY-SACRHGNKAGNVECYEGHEGPVVGL 270
            +N       + ++     + +  +VG  +  V                  G +  +  +
Sbjct: 143 NSNNTKVKNKIFTMDT---NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV 199

Query: 271 SSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN------KPVHSFNEFRDY---------V 315
           +    +        Y  SS D  V +    +           +F   R           V
Sbjct: 200 ALLPKEQ-----EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPV 254

Query: 316 MDVQWSPINPALFATVEVAGRVDLWNLN 343
             +++SP +     T    G +  WNL 
Sbjct: 255 NSIEFSPRH-KFLYTAGSDGIISCWNLQ 281

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 29/231 (12%), Positives = 60/231 (25%), Gaps = 40/231 (17%)

Query: 96  DGVCLIWNTKFKKTTPEFEFFCQ---SPVLSCCFAK-FNPYLILGGTYSGQIVLWDTRVQ 151
           DG+  + + +                + V +  F    N   ++ G  + Q+  +   + 
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180

Query: 152 KKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDL- 210
           +          +      V  +              S DGR+     +       +    
Sbjct: 181 EDDNGTIEESGLKYQIRDVALLPKEQEG----YACSSIDGRVAVEFFDDQGDDYNSSKRF 236

Query: 211 ------QYNNKQTKNLAVLSLAF-PQNDVNNFVVGCEDGNVY-----SACRHGNKAGNVE 258
                            V S+ F P            DG +      +  +  N A    
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSP--RHKFLYTAGSDGIISCWNLQTRKKIKNFA---- 290

Query: 259 CYEGHEGPVVGLSSHRAQGHIDFSH--LYLTSSYDWSVKLWNIKENKPVHS 307
             + +E  VV ++          S   L L +S D       I +   +++
Sbjct: 291 --KFNEDSVVKIA---------CSDNILCLATSDDTFKTNAAIDQTIELNA 330

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 39/268 (14%), Positives = 76/268 (28%), Gaps = 56/268 (20%)

Query: 101 IWNTKF-KKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRT 159
            W  +   +T P+ +     PVL  C++  +   +   +      +WD    +   +   
Sbjct: 68  CWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKMWDLSSNQAIQIA-- 124

Query: 160 PLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEM-----------------LS 202
                 H  PV  +  I   N   +++ S D  L  W                     + 
Sbjct: 125 -----QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI 179

Query: 203 SPQET----------RDLQYNNKQTKNL------AVLSLAF---PQNDVNNFVVGCEDGN 243
            P               L+    + + +          +A     QN    F +G  +G 
Sbjct: 180 YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR 239

Query: 244 VYSACRH---GNKAGNVECYEGHEGPVVGLSSHRAQGH---IDFS--HLYL-TSSYDWSV 294
           V  A  +    N A +   ++ H       S+ +       I F   H  L T   D   
Sbjct: 240 V--AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRF 297

Query: 295 KLWNIKENKPVHSFNEFRDYVMDVQWSP 322
             W+      + +  +    +    ++ 
Sbjct: 298 SFWDKDARTKLKTSEQLDQPISACCFNH 325

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 42/274 (15%), Positives = 84/274 (30%), Gaps = 45/274 (16%)

Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG 177
                S  +   +P  +  G+  G I+LW+  ++ K                +  +    
Sbjct: 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI--KGI--GAGGSITGLK-FN 173

Query: 178 TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQ-YNNKQTKNLAVLSLAF-PQNDVNNF 235
             N +   + S +G       +          L+ + +  T N+   SL           
Sbjct: 174 PLNTNQFYASSMEGTTRLQDFK-------GNILRVFASSDTINIWFCSLDVSA--SSRMV 224

Query: 236 VVGCEDGNVY--SACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS----HLYLTSS 289
           V G   GNV   +          +     H+  V          H+  +        T+S
Sbjct: 225 VTGDNVGNVILLNM-----DGKELWNLRMHKKKVT---------HVALNPCCDWFLATAS 270

Query: 290 YDWSVKLWNIKENKPVHSFNEFR---DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT 346
            D +VK+W++++ +   SF         V    +SP + A   T +    + +++ +   
Sbjct: 271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSAS-QW 328

Query: 347 EVPAT----SAIVEGAPALSRVTWTPNGTQLCVG 376
           + P                 +  W P    + VG
Sbjct: 329 DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG 362

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 32/295 (10%), Positives = 79/295 (26%), Gaps = 37/295 (12%)

Query: 96  DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTP 155
           D    IWN    K         +          +    ++  + +G I   +        
Sbjct: 260 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGII-WTKQALVSISANGFINFVNPE----LG 314

Query: 156 VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNK 215
                     H   +  +S   + +   L S   +G + SW +    +    R     + 
Sbjct: 315 SIDQVRY--GHNKAITALSS--SADGKTLFSADAEGHINSWDIS---TGISNRVFPDVHA 367

Query: 216 QTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY-EGHEGPVVGLSSHR 274
                 +  +        +      D ++      G+   + +          +GL+   
Sbjct: 368 T----MITGIKTTSK--GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA--- 418

Query: 275 AQGHIDFSH--LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVE 332
                  S       ++    + +++    K       +      V  S  +    A   
Sbjct: 419 ------VSADGDIAVAACYKHIAIYSHG--KLTEVPISYNSSC--VALSN-DKQFVAVGG 467

Query: 333 VAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
              +V ++ L+  +     + +       + V ++ NG  L   D+   +  + V
Sbjct: 468 QDSKVHVYKLSGASVSEVKTIVHPAEI--TSVAFSNNGAFLVATDQSRKVIPYSV 520

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 47/238 (19%)

Query: 96  DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTP 155
           +G    W+     +   F     + +           L     +   + +        + 
Sbjct: 345 EGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGDLFTVS-WDDHLKVVPA---GGSG 399

Query: 156 VHRTPLSVMAHTHPVFCMSVI--GTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYN 213
           V  +       +     ++V   G      +   +    +  +S   L+    + +    
Sbjct: 400 VDSSKAVANKLSSQPLGLAVSADGD-----IAVAACYKHIAIYSHGKLTEVPISYN---- 450

Query: 214 NKQTKNLAVLSLAF-PQNDVNNFVVGCEDGNV--YSACRHGNKAGNVECYEGHEGPVVGL 270
                      +A     D     VG +D  V  Y     G     V+    H   +  +
Sbjct: 451 --------SSCVALSN--DKQFVAVGGQDSKVHVYKL--SGASVSEVKT-IVHPAEITSV 497

Query: 271 SSHRAQGHIDFSH--LYL-TSSYDWSVKLWNIKENKPVHSFNEFR---DYVMDVQWSP 322
           +         FS+   +L  +     V  +++  N  +   N +      V  V WSP
Sbjct: 498 A---------FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 546

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 18/121 (14%)

Query: 261 EGHEGPVVGLSSHRAQGHIDFSH---LYL-TSSYDWSVKLWNIKENKPVHSFNEFRDYVM 316
            G    +           +DF       + + S D +V ++     K   +F E   +V 
Sbjct: 144 TGQARAMNS---------VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVH 194

Query: 317 DVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSR----VTWTPNGTQ 372
            V+++P + +LFA+    G + L+N    T+            A S     +TW+P+GT+
Sbjct: 195 SVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 253

Query: 373 L 373
           +
Sbjct: 254 I 254

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 44.5 bits (106), Expect = 5e-05
 Identities = 29/270 (10%), Positives = 72/270 (26%), Gaps = 42/270 (15%)

Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG 177
              + S  F    P+ I+ G+    + +++    K             HT  V  +    
Sbjct: 147 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE------HTKFVHSVRY-- 198

Query: 178 TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK--NLAVLSLAF-PQNDVNN 234
             +     S   DG +  ++        +T   + ++ +    + +V  L + P  D   
Sbjct: 199 NPDGSLFASTGGDGTIVLYNGV---DGTKTGVFEDDSLKNVAHSGSVFGLTWSP--DGTK 253

Query: 235 FVVGCEDGNVY------SACRHGNKAGNVECYEGHEGPV--VGLSSHRAQGHIDFSHLYL 286
                 D  +                       G       +G+             L +
Sbjct: 254 IASASADKTIKIWNVATLKVEK-------TIPVGTRIEDQQLGIIW-------TKQAL-V 298

Query: 287 TSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT 346
           + S +  +   N +              +  +  S  +     + +  G ++ W+++   
Sbjct: 299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGI 357

Query: 347 EVPATSAIVEGAPALSRVTWTPNGTQLCVG 376
                  +      ++ +  T  G    V 
Sbjct: 358 SNRVFPDVHAT--MITGIKTTSKGDLFTVS 385

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 46/258 (17%), Positives = 86/258 (33%), Gaps = 63/258 (24%)

Query: 134 ILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRL 193
           ++       + +W+        V     +    +  V   SV  + +   L     +G +
Sbjct: 106 VVAVALERNVYVWNADSGS---VSALAET--DESTYV--ASVKWSHDGSFLSVGLGNGLV 158

Query: 194 CSWSLEMLSSPQETRDLQYNNKQTKNL-----AVLSLAFPQNDVNNFVVGCEDGNVYSAC 248
             + +E             +  + + +      V  L++   + +    G   G +    
Sbjct: 159 DIYDVE-------------SQTKLRTMAGHQARVGCLSW---NRHVLSSGSRSGAI---- 198

Query: 249 RHGN-KAGN--VECYEGHEGPVVGLSSHRAQGHIDFS--HLYLTS-SYDWSVKLWNIKEN 302
            H + +  N  +   +GH   V GL+         +    L L S   D  V++W+ + +
Sbjct: 199 HHHDVRIANHQIGTLQGHSSEVCGLA---------WRSDGLQLASGGNDNVVQIWDARSS 249

Query: 303 KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVD----LWNLNLDTEVPATSAIVEGA 358
            P  +       V  V W P    L AT    G +D     WN         T A V   
Sbjct: 250 IPKFTKTNHNAAVKAVAWCPWQSNLLAT--GGGTMDKQIHFWNAA-------TGARVNTV 300

Query: 359 PALSRVT---WTPNGTQL 373
            A S+VT   W+P+  ++
Sbjct: 301 DAGSQVTSLIWSPHSKEI 318

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 19/149 (12%), Positives = 51/149 (34%), Gaps = 29/149 (19%)

Query: 180 NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC 239
           +  N+++++ +  +  W+ +   S   +   + +        V S+ +  +  +   VG 
Sbjct: 102 SNLNVVAVALERNVYVWNAD---SGSVSALAETDESTY----VASVKWSHDG-SFLSVGL 153

Query: 240 EDGNVY----SACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS-SYDWSV 294
            +G V      +         +    GH+  V  LS         ++   L+S S   ++
Sbjct: 154 GNGLVDIYDVESQTK------LRTMAGHQARVGCLS---------WNRHVLSSGSRSGAI 198

Query: 295 KLWNIKENKP-VHSFNEFRDYVMDVQWSP 322
              +++     + +       V  + W  
Sbjct: 199 HHHDVRIANHQIGTLQGHSSEVCGLAWRS 227

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 32/249 (12%), Positives = 73/249 (29%), Gaps = 40/249 (16%)

Query: 96  DGVCLIWNTKFKKT----TPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWD---- 147
            GV  IWN K        +    + C S V        N       +  GQI++      
Sbjct: 85  QGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHY 143

Query: 148 -----TRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLS 202
                 +      + +  L           M     +    L++++N  R+  + +    
Sbjct: 144 QQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR--- 200

Query: 203 SPQETRDLQYNNKQTKNLAVLSLAF-PQNDVNNFVVGCEDGNVYSAC----RHGNKAGNV 257
           + +  + ++ + +     AV S+      +    ++G   G +        R      + 
Sbjct: 201 TLERLQIIENSPRHG---AVSSICIDE--ECCVLILGTTRGII---DIWDIRFNVLIRSW 252

Query: 258 ECYEGHEGPVVGLSSHRAQGHIDFSH--LYLTS-SYDWSVKLWNIKENKPVHSFNEFRDY 314
               G   P+  +          +    + +   S    + +WN  +    ++F    + 
Sbjct: 253 SF--GDHAPITHVEVC-----QFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQ 305

Query: 315 VMDVQWSPI 323
                + PI
Sbjct: 306 PSMEHFLPI 314

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 20/250 (8%), Positives = 64/250 (25%), Gaps = 53/250 (21%)

Query: 96  DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNP---YLILGGTYSGQIVLWDTRVQK 152
            G+  IW+ +F      + F   +P+      +F      +++GG+    + +W+     
Sbjct: 235 RGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF---- 290

Query: 153 KTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR-LCSWSLEMLSSPQETRDLQ 211
                +                        ++       + L   +   + S      + 
Sbjct: 291 VKGHCQYAFI--NSDEQP------------SMEHFLPIEKGLEELNFCGIRSLNALSTIS 336

Query: 212 YNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLS 271
            +N +                   +      ++           ++            + 
Sbjct: 337 VSNDKI-----------------LLTDEATSSI--------VMFSLN---ELSSSKA-VI 367

Query: 272 SHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINP-ALFAT 330
           S      + F    +T++    ++         V       D +  +    ++   L   
Sbjct: 368 SPSRFSDV-FIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVA 426

Query: 331 VEVAGRVDLW 340
            + +G + ++
Sbjct: 427 CDNSGLIGIF 436

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 50.9 bits (121), Expect = 4e-07
 Identities = 50/298 (16%), Positives = 84/298 (28%), Gaps = 72/298 (24%)

Query: 130 NPYLILGGTYSGQIVLWDTRVQKKTPVHRT------------------------------ 159
           N    L  T    I LW    + K P                                  
Sbjct: 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVE 165

Query: 160 --PLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT 217
             P  + A+ H     S+    +    +S ++D R+  W LE+        D++  N + 
Sbjct: 166 ASPRRIFANAHTYHINSISINSDYETYLS-ADDLRINLWHLEITDRSFNIVDIKPANMEE 224

Query: 218 KNLAVLSLAFPQNDVNNFVVGCEDGNV--YSACRHGNKAGNVECYEGHEGPV--VGLSSH 273
               + +  F  N  N FV     G +             + + +E  E P      S  
Sbjct: 225 LTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEI 284

Query: 274 RAQ-GHIDFSH--LYLTSSYDWSVKLWNI-KENKPVHSFNEFRDYVMDVQWSPINPALFA 329
            +    + FSH   Y+ +    SVK+W++  EN+PV ++         +     N  +F 
Sbjct: 285 ISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFD 344

Query: 330 TVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
             E                                 W  + + +  G       MFD 
Sbjct: 345 KFECC-------------------------------WNGSDSVVMTGSYNNFFRMFDR 371

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 36/315 (11%), Positives = 86/315 (27%), Gaps = 49/315 (15%)

Query: 96  DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNP--YLILGGTYSGQIVLWDTRVQKK 153
            G  + W     K   + +      + +  F   N    L+  G   G++V++    + K
Sbjct: 6   GGNDIQWCFSQVKGAVDDDVAEADIISTVEF---NHSGELLATGDKGGRVVIFQQEQENK 62

Query: 154 TPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCS--WS-----LEMLSSPQE 206
              H          + V+            L S+  + ++    W       + L S  +
Sbjct: 63  IQSHSR------GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTND 116

Query: 207 TRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGP 266
            + ++      ++         + D                 R  +              
Sbjct: 117 -KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRR----- 170

Query: 267 VVGLSSHRAQGH-IDFSH--LYLTSSYDWSVKLWNIKENKPV--------HSFNEFRDYV 315
            +  ++H    + I  +       S+ D  + LW+++              +  E  + +
Sbjct: 171 -IFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVI 229

Query: 316 MDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSR------------ 363
              ++ P +   F      G + L ++         S + E     S             
Sbjct: 230 TAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSIS 289

Query: 364 -VTWTPNGTQLCVGD 377
            V ++ +G  +   D
Sbjct: 290 DVKFSHSGRYMMTRD 304

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 50.1 bits (119), Expect = 6e-07
 Identities = 31/260 (11%), Positives = 78/260 (30%), Gaps = 25/260 (9%)

Query: 119 SPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGT 178
           S + +         LI        ++++D                          ++   
Sbjct: 103 SYIRNLRLTSDESRLIACADSDKSLLVFDV----DKTSKNVLKLRKRFCFSKRPNAISIA 158

Query: 179 QNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF-PQNDVNNFVV 237
           ++   +I     G + S  +  +   + T++    +       +  +     +D + F++
Sbjct: 159 EDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSM----LTDVHLIKDSDGHQFII 214

Query: 238 -GCEDGNVYSACRHGNKAGNVECY-EGHEGPVVGLSSHRAQGHIDFS--HLYLTSSYDWS 293
               D ++     H  +   V+ +  GH+  V   SS      I     +L L++  D  
Sbjct: 215 TSDRDEHI--KISHYPQCFIVDKWLFGHKHFV---SS------ICCGKDYLLLSAGGDDK 263

Query: 294 VKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGR-VDLWNLNLDTEVPATS 352
           +  W+ K  K + +F+        +    + P  F           +  +     +P  +
Sbjct: 264 IFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVA 323

Query: 353 AIVEGAPALSRVTWTPNGTQ 372
             VE    +  +  +     
Sbjct: 324 FFVEATKCIIILEMSEKQKG 343

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 40.5 bits (94), Expect = 8e-04
 Identities = 14/106 (13%), Positives = 41/106 (38%), Gaps = 1/106 (0%)

Query: 286 LTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD 345
           L S+   S+K    K   P         Y+ +++ +     L A  +    + +++++  
Sbjct: 76  LKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKT 135

Query: 346 TE-VPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV 390
           ++ V         +   + ++   + T + + D+ G +   D+  +
Sbjct: 136 SKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSI 181

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 50.3 bits (121), Expect = 7e-07
 Identities = 27/236 (11%), Positives = 73/236 (30%), Gaps = 40/236 (16%)

Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV-- 175
              + +C   +  P   +     G +V +     K +   RT          V  +    
Sbjct: 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT---HHKQGSFVRDVEFSP 216

Query: 176 -IGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF--PQNDV 232
             G      +I++ +D ++  +  +   S +  + ++ + +      V    F     D 
Sbjct: 217 DSGEF----VITVGSDRKISCFDGK---SGEFLKYIEDDQE-----PVQGGIFALSWLDS 264

Query: 233 NNFVVGCEDGNVYSACR----HGNKAGNVECYEGHEGPVVGLS-SHRAQGHIDFSHLYLT 287
             F     D  +    R      +K       +  +     +       G I      ++
Sbjct: 265 QKFATVGADATI----RVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI------IS 314

Query: 288 SSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN 343
            S D ++  + +  ++ + + +     +  +  +P+      +    GR+  W+ +
Sbjct: 315 LSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIMEWSSS 365

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 39/274 (14%), Positives = 85/274 (31%), Gaps = 65/274 (23%)

Query: 145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSP 204
           +WD  V     V +   ++         + V+ T N   +IS+S DG L  + L      
Sbjct: 278 VWD--VTTSKCVQK--WTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYELG---HD 329

Query: 205 QETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVE-CYEGH 263
           +  + +  +NK      + +L       N  + G  DG +           +    ++ H
Sbjct: 330 EVLKTISGHNK-----GITALTV-----NPLISGSYDGRI--------MEWSSSSMHQDH 371

Query: 264 EGPVVGLS------------------------SHRAQGHIDFSH---LYLTSSYDWSVKL 296
              +V L                            +Q  +  ++        + D  + +
Sbjct: 372 SNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI 431

Query: 297 WNIKENKPVHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV--PATSA 353
                   + S         + +  + +   L           L +L +  ++  P  + 
Sbjct: 432 LQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL-EEGNTIQVFKLSDLEVSFDLKTPLRAK 490

Query: 354 IVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
                   S ++ +P+ T +  GD  G I ++D+
Sbjct: 491 P-------SYISISPSETYIAAGDVMGKILLYDL 517

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 37/299 (12%), Positives = 82/299 (27%), Gaps = 85/299 (28%)

Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVI- 176
              + +      NP  ++ G+Y G+I+ W +    +            H++ +  +    
Sbjct: 339 NKGITALTV---NP--LISGSYDGRIMEWSSSSMHQ-----------DHSNLIVSLDNSK 382

Query: 177 GTQNAHNLISISNDGRLCSWSLE---------MLSSPQ------------------ETRD 209
             +      SIS D  L    +          + S+                     T D
Sbjct: 383 AQE----YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD 438

Query: 210 LQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVG 269
           +  + +     + +SL+      N   VG E+GN     +  +   + +           
Sbjct: 439 IIKSVRLNSPGSAVSLSQ-----NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSY 493

Query: 270 LSSHRAQGHIDFSH--LYL-TSSYDWSVKLWNIKENKPVHSFNEF-RDYVMDVQWSPINP 325
           +S          S    Y+        + L++++  +   S   F    +  + W P   
Sbjct: 494 IS---------ISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 544

Query: 326 ALFATVEVAGRV-----D----LWNLNLDTEVPAT----SAIVEGAPALSRVTWTPNGT 371
                      V     D    ++++    ++          V        + W    T
Sbjct: 545 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNN------LLWETPST 597

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 40/215 (18%), Positives = 74/215 (34%), Gaps = 51/215 (23%)

Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG 177
            S V        +   ++ G+    + +WD     +T      L    H   V C+   G
Sbjct: 199 TSTVRCMHL---HEKRVVSGSRDATLRVWDI----ETGQCLHVLM--GHVAAVRCVQYDG 249

Query: 178 TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV 237
            +    ++S + D  +  W  E   +      LQ +  +     V SL F   D  + V 
Sbjct: 250 RR----VVSGAYDFMVKVWDPE---TETCLHTLQGHTNR-----VYSLQF---DGIHVVS 294

Query: 238 GCEDGNVYSACRHGNK---AGNVEC---YEGHEGPVVGLSSHRAQGHIDFSHLYLTS-SY 290
           G  D ++        +        C     GH+    G+               L S + 
Sbjct: 295 GSLDTSI--------RVWDVETGNCIHTLTGHQSLTSGME---------LKDNILVSGNA 337

Query: 291 DWSVKLWNIKENKPVHSF---NEFRDYVMDVQWSP 322
           D +VK+W+IK  + + +    N+ +  V  +Q++ 
Sbjct: 338 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 372

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 10/63 (15%)

Query: 261 EGHEGPVVGLSSHRAQGHIDFSHLYLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQ 319
            GH G V                  + S S D ++K+WN +  + +H+       V  + 
Sbjct: 156 VGHTGGVWSSQ---------MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH 206

Query: 320 WSP 322
              
Sbjct: 207 LHE 209

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 49/289 (16%), Positives = 91/289 (31%), Gaps = 53/289 (18%)

Query: 145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHN-----LISISNDGRLCSWSLE 199
           ++D  V+    +    L    H  PV+ ++      AH      L S S D ++  W  E
Sbjct: 39  IFD--VRNGGQILIADLR--GHEGPVWQVAW-----AHPMYGNILASCSYDRKVIIWREE 89

Query: 200 MLSSPQETRDLQYNNKQTKNLA-----VLSLAFPQNDVNNFVV-GCEDGNV--YSACRHG 251
                      +    ++   A     V S+ +  +D    +  G  DG +   +     
Sbjct: 90  -------NGTWE----KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY-TGE 137

Query: 252 NKAGNVECYEGHEGPV----------VGLSSHRAQGHIDFSHLYLTS-SYDWSVKLWNIK 300
            +    +    H               G       G          S   D  +KLW  +
Sbjct: 138 GQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEE 197

Query: 301 ENKPVHSFNEFR---DYVMDVQWSPINPALFATVEVA---GRVDLWNLNLDTEVPATSAI 354
           E+       +     D+V DV W+P      +T+      GRV +W  +  +    +  +
Sbjct: 198 EDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKL 257

Query: 355 VEGAP-ALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG-IACLKFITSG 401
           +      +  V+W+     L V      +T++     G   C+  +  G
Sbjct: 258 LHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKG 306

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 27/145 (18%)

Query: 260 YEGHEGPVVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVM 316
            +GH G +    S      ID        +T S D+S+KLW++   + V ++ +    V 
Sbjct: 70  LDGHTGTI---WS------IDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW-KSPVPVK 119

Query: 317 DVQWSP----INPALFATVEVAGRVDLWNLNLDTEVP-------ATSAIVEGAPALSRVT 365
            V++SP        L   ++  G ++++ +  D+               +     L   T
Sbjct: 120 RVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179

Query: 366 ---WTPNGTQLCVGDEKGAITMFDV 387
              W+  G  +  G + G I+ +DV
Sbjct: 180 VAGWSTKGKYIIAGHKDGKISKYDV 204

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 55/249 (22%), Positives = 84/249 (33%), Gaps = 36/249 (14%)

Query: 84  SYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQI 143
           +    ++  +                           V +      N  +I+  +    I
Sbjct: 349 NAASGRQTVDAALAAAQTNAAAGLVLKGTMRA-HTDMVTAIATPIDNADIIVSASRDKSI 407

Query: 144 VLWD-TRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLS 202
           +LW  T+  K   V +  L+   H+H V    V+ + +    +S S DG L  W L    
Sbjct: 408 ILWKLTKDDKAYGVAQRRLT--GHSHFVE--DVVLSSDGQFALSGSWDGELRLWDLA--- 460

Query: 203 SPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV-GCEDG-----NVYSACRHGNKAGN 256
           +   TR    + K      VLS+AF  +  N  +V    D      N    C    K   
Sbjct: 461 AGVSTRRFVGHTK-----DVLSVAFSLD--NRQIVSASRDRTIKLWNTLGEC----KYTI 509

Query: 257 VECYEGHEGPV--VGLSSHRAQGHIDFSHLYLTS-SYDWSVKLWNIKENKPVHSFNEFRD 313
            E  EGH   V  V  S        +     + S S+D +VK+WN+   K   +      
Sbjct: 510 SEGGEGHRDWVSCVRFSP-------NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG 562

Query: 314 YVMDVQWSP 322
           YV  V  SP
Sbjct: 563 YVSTVAVSP 571

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 30/208 (14%), Positives = 60/208 (28%), Gaps = 28/208 (13%)

Query: 120 PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ 179
           P+ +     +   L      +    + +   QK   +   P             + +   
Sbjct: 298 PLGAVALKSYEEELAKDPRIA--ATMEN--AQKGEIMPNIPQM---SAFWYAVRTAVINA 350

Query: 180 NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC 239
            +      +      + +   L      R             V ++A P ++ +  V   
Sbjct: 351 ASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDM--------VTAIATPIDNADIIVSAS 402

Query: 240 EDGNV--YSACRHGNKAGN-VECYEGHEGPV--VGLSSHRAQGHIDFSHLYLTSSYDWSV 294
            D ++  +   +     G       GH   V  V LSS       D     L+ S+D  +
Sbjct: 403 RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-------DGQFA-LSGSWDGEL 454

Query: 295 KLWNIKENKPVHSFNEFRDYVMDVQWSP 322
           +LW++        F      V+ V +S 
Sbjct: 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSL 482

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 51/268 (19%), Positives = 89/268 (33%), Gaps = 40/268 (14%)

Query: 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLS 202
           I +++  V+ +T      L+   H  PV+ +     +    L S S DG++  W  E   
Sbjct: 33  IKIFE--VEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE--- 85

Query: 203 SPQETRDLQYNNKQTKNLA-----VLSLAF-PQNDVNNFVVGCEDGNV--YSACRHGNKA 254
                        Q    A     V S+ + P       +V   DG V       +G  +
Sbjct: 86  ----NGRWS----QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS 137

Query: 255 GNVECYEGHEGPV-------VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP--- 304
             +   + H   V         +           S  ++T   D  VK+W    +     
Sbjct: 138 PII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195

Query: 305 -VHSFNEFRDYVMDVQWSP--INPALFATVEVAGRVDLWNLNLDT-EVPATSAIVEGAP- 359
              +     D+V DV WSP  +  +  A+V       +W  + +      T    E  P 
Sbjct: 196 LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 255

Query: 360 ALSRVTWTPNGTQLCVGDEKGAITMFDV 387
            L R +W+ +G  L +      +T++  
Sbjct: 256 VLWRASWSLSGNVLALSGGDNKVTLWKE 283

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 21/125 (16%)

Query: 261 EGHEGPVVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLWNIKEN---KPVHSFNEFRDY 314
             H+  V           +D++   +  +T S D +  ++  + +   K           
Sbjct: 52  SDHDKIVTC---------VDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRA 102

Query: 315 VMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVT---WTPNGT 371
              V+WSP N   FA    A  + +     + +   +  +       S +    W PN  
Sbjct: 103 ATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLR--STILSLDWHPNNV 159

Query: 372 QLCVG 376
            L  G
Sbjct: 160 LLAAG 164

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 42/330 (12%), Positives = 85/330 (25%), Gaps = 75/330 (22%)

Query: 109 TTPEFEFFCQSPVLSCCFAKFNP--YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH 166
            T +       P     F   N      +  T + Q+ L++         H    S   H
Sbjct: 2   ATSQVLHILPKPSYEHAF---NSQRTEFVTTTATNQVELYE--QDGNGWKHARTFS--DH 54

Query: 167 THPVFCMSVIGTQNAHNLISISNDGRL---CS-------WSLEMLSSPQETRDLQYNNKQ 216
              V C            +  +        CS       +      + ++T  L   N+ 
Sbjct: 55  DKIVTC------------VDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR- 101

Query: 217 TKNLAVLSLAF-PQNDVNNFVVGCEDGNV--YSACRHGNKAGNVECYEGHEGPVVGLSSH 273
               A   + + P  + + F VG     +      +  +   +          ++     
Sbjct: 102 ----AATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILS---- 151

Query: 274 RAQGHIDFS---HLYLTSSYDWSVKLWNIKENKP-----------------VHSFNEFRD 313
                +D+     L      D    + +                       V +      
Sbjct: 152 -----LDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGG 206

Query: 314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGA--PALSRVTWTPNGT 371
           +V  V +SP +    A       V +   +   + P     V+ +  P  S + W     
Sbjct: 207 WVHAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRS-LLWANESA 264

Query: 372 QLCVGDEKGAITMFDVGEVGIACLKFITSG 401
            +  G    +  +    E G A  + + +G
Sbjct: 265 IVAAGYN-YSPILLQGNESGWAHTRDLDAG 293

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 42/285 (14%), Positives = 76/285 (26%), Gaps = 60/285 (21%)

Query: 121 VLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMS---VIG 177
            LS         L L         +       +    R       H   +  +    V G
Sbjct: 4   FLSARQTGLEDPLRLR-RAESTRRVLGL----ELNKDRDVER--IHGGGINTLDIEPVEG 56

Query: 178 TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL-----AVLSLAFPQNDV 232
                 ++S  +DG +  + LE  S           +    +      +V ++ +  +D 
Sbjct: 57  RY----MLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT 112

Query: 233 NNFVVGCEDG-----NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS----- 282
             F     D      +  +                 E  V              S     
Sbjct: 113 GMFTSSSFDKTLKVWDTNT--------LQTADVFNFEETVYSHH---------MSPVSTK 155

Query: 283 HLYLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN 341
           H  +   +    V+L ++K     H     R  ++ V WSP    + AT     RV LW+
Sbjct: 156 HCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWD 215

Query: 342 LNLDTEVPATSAIVEGAPALSR-------------VTWTPNGTQL 373
           +   +    T     G  + +              + +T +G  L
Sbjct: 216 VRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 53/272 (19%), Positives = 90/272 (33%), Gaps = 40/272 (14%)

Query: 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLS 202
           I +++  V+ +T      L+   H  PV+ +     +    L S S DG++  W  E   
Sbjct: 33  IKIFE--VEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE--- 85

Query: 203 SPQETRDLQYNNKQTKNLA-----VLSLAF-PQNDVNNFVVGCEDGNV--YSACRHGNKA 254
                        Q    A     V S+ + P       +V   DG V       +G  +
Sbjct: 86  ----NGRWS----QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS 137

Query: 255 GNVECYEGHEGPVVGLS-------SHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP--- 304
             +   + H   V   S                 S  ++T   D  VK+W    +     
Sbjct: 138 PII--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195

Query: 305 -VHSFNEFRDYVMDVQWSP--INPALFATVEVAGRVDLWNLNLDT-EVPATSAIVEGAP- 359
              +     D+V DV WSP  +  +  A+V       +W  + +      T    E  P 
Sbjct: 196 LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 255

Query: 360 ALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391
            L R +W+ +G  L +      +T++     G
Sbjct: 256 VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 37/228 (16%), Positives = 69/228 (30%), Gaps = 39/228 (17%)

Query: 118 QSPVLSCCFAKFNPY--LILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV 175
           + PV    +A    +  ++   +Y G++++W    +          +V  H+  V  +  
Sbjct: 53  EGPVWRVDWA-HPKFGTILASCSYDGKVLIWK--EENGRWSQIAVHAV--HSASVNSVQW 107

Query: 176 IGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF-------- 227
              +    L+  S+DG++           +E             + V S ++        
Sbjct: 108 APHEYGPLLLVASSDGKVSVVEF------KENGTTSPIIIDAHAIGVNSASWAPATIEED 161

Query: 228 ----PQNDVNNFVVGCEDGNV--YSACRHGNKAGNVECYEGHEGPV--VGLSSHRAQGHI 279
                  +   FV G  D  V  +               EGH   V  V  S        
Sbjct: 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-- 219

Query: 280 DFSHLYLTSSYDWSVKLWNI-----KENKPVHSFNEFRDYVMDVQWSP 322
             S+L  + S D +  +W          K +    +F D +    WS 
Sbjct: 220 --SYL-ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL 264

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 31/213 (14%)

Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWD-TRVQKKTPVHRTPLSVMAHTHPVFCMSVI 176
              V S   +   P L+L  +    ++ W  T   +K  V         H+H V      
Sbjct: 17  NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK--GHSHIVQ--DCT 72

Query: 177 GTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFV 236
            T +    +S S D  L  W +    + +  +    +        V+S+   +    + +
Sbjct: 73  LTADGAYALSASWDKTLRLWDVA---TGETYQRFVGHKS-----DVMSVDIDKK--ASMI 122

Query: 237 V-GCEDG-----NVYSACRHGNKAGNVECYEGHEGPVVGLS-SHRAQGHIDFSHLYLTSS 289
           + G  D       +   C        +    GH   V  +      +   D   + +++ 
Sbjct: 123 ISGSRDKTIKVWTIKGQC--------LATLLGHNDWVSQVRVVPNEKADDDSVTI-ISAG 173

Query: 290 YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322
            D  VK WN+ + +    F      +  +  SP
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASP 206

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 33/224 (14%), Positives = 66/224 (29%), Gaps = 47/224 (20%)

Query: 118 QSPVLSCCFAKFNP---YLILGGTYSGQIVLWDTRVQKKTPV---HRTPLSVMAHTHPVF 171
             P+    F   +     L+     S ++ L++   Q +  +   +    +        +
Sbjct: 18  NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAW 77

Query: 172 CMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL-----AVLSLA 226
             +     +   L    + G +   +                 +  K+      A+  L 
Sbjct: 78  --TYDSNTSHPLLAVAGSRGIIRIINPI-------------TMQCIKHYVGHGNAINELK 122

Query: 227 FPQNDVNNFVVGCEDG-----NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDF 281
           F   D N  +   +D      N+ +              EGH   V  LS        D+
Sbjct: 123 FHPRDPNLLLSVSKDHALRLWNIQT----DTLVAIFGGVEGHRDEV--LS-------ADY 169

Query: 282 SH---LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322
                  ++   D S+KLW I   + +++  E  DY  +    P
Sbjct: 170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP 213

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 15/122 (12%)

Query: 261 EGHEGPVVGLSSHRAQGHIDFSHLYL---TSSYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
           + +       + +      D +  +     +     +++ N    + +  +    + + +
Sbjct: 61  QSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINE 120

Query: 318 VQWSPINPALFATVEVAGRVD----LWNLNLDTEVPATSAIVEG--APALSRVTWTPNGT 371
           +++ P +P L  +       D    LWN+  DT V A    VEG     LS   +   G 
Sbjct: 121 LKFHPRDPNLLLS----VSKDHALRLWNIQTDTLV-AIFGGVEGHRDEVLS-ADYDLLGE 174

Query: 372 QL 373
           ++
Sbjct: 175 KI 176

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 38/157 (24%)

Query: 166 HTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL 225
           H   V C+ ++  +N   +++ S D  L  W L          D                
Sbjct: 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP---KESSVPDHGEE------------ 246

Query: 226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLY 285
                     V    + N Y           V    GH   V  +S H         ++ 
Sbjct: 247 -----HDYPLVFHTPEENPYF----------VGVLRGHMASVRTVSGH--------GNIV 283

Query: 286 LTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322
           ++ SYD ++ +W++ + K ++  +   D +    +  
Sbjct: 284 VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH 320

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 261 EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPV-HSFNEFRDYVMDVQ 319
           E H   +  ++ H  + ++      L+ S D +VKLWN + N  +  +F     +VM V 
Sbjct: 94  EAHPDYIRSIAVHPTKPYV------LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147

Query: 320 WSPINPALFATVEVAGRVDLWNLN 343
           ++P +P+ FA+  +   V +W+L 
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLG 171

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 12/69 (17%)

Query: 257 VECYEGHEGPVVGLSSHRAQGHIDFSH---LYLTSSYDWSVKLWNIKENKPVHSFNEFRD 313
           V   +  E PV      RA     F       +  S D+ ++++N    + V  F    D
Sbjct: 48  VRSIQVTETPV------RA---GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD 98

Query: 314 YVMDVQWSP 322
           Y+  +   P
Sbjct: 99  YIRSIAVHP 107

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 41/234 (17%), Positives = 72/234 (30%), Gaps = 66/234 (28%)

Query: 133 LILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR 192
            +L   YSG++ +W+   Q    V    + V     PV     I  +N   +I  S+D R
Sbjct: 27  WVLTTLYSGRVEIWNYETQ--VEVR--SIQV--TETPVRAGKFIARKN--WIIVGSDDFR 78

Query: 193 LCSWSLEMLS-----------------SPQETR-------------DLQYNNKQTKNL-- 220
           +  ++                       P +               + + N    +    
Sbjct: 79  IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138

Query: 221 ---AVLSLAFPQNDVNNFVVGCEDGNV----YSACRHGNKAGNVECYEGHEGPVVGLSSH 273
               V+ +AF   D + F  GC D  V               N     G E  V      
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-----NFTLTTGQERGVN----- 188

Query: 274 RAQGHIDFSHL----YLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322
               ++D+  L    Y+ + S D ++K+W+ +    V +       V    + P
Sbjct: 189 ----YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 12/65 (18%)

Query: 261 EGHEGPVVGLSSHRAQGHIDFSH---LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
                 V G         IDF       LT+ Y   V++WN +    V S       V  
Sbjct: 10  SNRSDRVKG---------IDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRA 60

Query: 318 VQWSP 322
            ++  
Sbjct: 61  GKFIA 65

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 34/188 (18%), Positives = 58/188 (30%), Gaps = 36/188 (19%)

Query: 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV-IGTQNAHNLISISNDGRLCSWSLEML 201
           + LW+   +    + +T      H H V  M V    ++     S   D  +  WSL   
Sbjct: 121 VKLWN--WENNWALEQT-FE--GHEHFV--MCVAFNPKDPSTFASGCLDRTVKVWSL--- 170

Query: 202 SSPQETRDLQYNNKQTKNLAVLSLAF-PQNDVNNFVVGCEDGNVY------SACRHGNKA 254
                   L    ++     V  + + P  D    +   +D  +        +C      
Sbjct: 171 GQSTPNFTLTTGQER----GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC------ 220

Query: 255 GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDY 314
             V   EGH   V     H     I      ++ S D ++K+WN    K   + N   + 
Sbjct: 221 --VATLEGHMSNVSFAVFHPTLPII------ISGSEDGTLKIWNSSTYKVEKTLNVGLER 272

Query: 315 VMDVQWSP 322
              +   P
Sbjct: 273 SWCIATHP 280

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 28/218 (12%), Positives = 52/218 (23%), Gaps = 24/218 (11%)

Query: 119 SPVLSCCFAKFNPYLILGGTYSGQIVLWDT----RVQKKTPVHRTPLSVMAHTHPVFCMS 174
                           +   +     +             PV +   S     +     S
Sbjct: 271 ERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSG--GKNAA--AS 326

Query: 175 VIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYN----------NKQTKNLAVLS 224
            I T        +  D  L   + E+ S     + L ++          + +      L+
Sbjct: 327 DIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALA 386

Query: 225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHL 284
                       V   D N Y+     ++ G ++ Y+  +          +     FS  
Sbjct: 387 WRNKAFGKCQDFVWGPDSNSYAL---IDETGQIKYYKNFKEVTSWSVPMHSAIDRLFSGA 443

Query: 285 YLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322
            L    D  V  ++      V           DV WS 
Sbjct: 444 LLGVKSDGFVYFFDWDNGTLVR---RIDVNAKDVIWSD 478

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 28/219 (12%), Positives = 50/219 (22%), Gaps = 50/219 (22%)

Query: 119 SPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGT 178
            P  S           +       I     R       H   ++ + H   V        
Sbjct: 10  KPAYSFHVTADGQMQPVPFPPDALIGPGIPR-------HARQINTLNHGEVVCA------ 56

Query: 179 QNAHNLISISNDGRL---CS------WSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF-P 228
                 ++ISN  R            W +     P     +   +   ++  + S    P
Sbjct: 57  ------VTISNPTRHVYTGGKGCVKVWDIS---HPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 229 QNDVNNFVVGCEDGNVY--SACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSH--L 284
             D    +VG E   +          +                L+          S    
Sbjct: 108 --DGCTLIVGGEASTLSIWDLAAPTPRIKAE--LTSSAPACYALA---------ISPDSK 154

Query: 285 YLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322
              S   D ++ +W++     V  F    D    +  S 
Sbjct: 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 44.0 bits (105), Expect = 4e-05
 Identities = 63/275 (22%), Positives = 104/275 (37%), Gaps = 48/275 (17%)

Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWD-TRVQKKTPVHRTPLSVMAHTHPVFCMSVI 176
              V         P +IL  +    I++W  TR +    + +  L    H+H V    V+
Sbjct: 38  NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR--GHSHFVS--DVV 93

Query: 177 GTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFV 236
            + +    +S S DG L  W L    +   TR    + K      VLS+AF  +  N  +
Sbjct: 94  ISSDGQFALSGSWDGTLRLWDLT---TGTTTRRFVGHTK-----DVLSVAFSSD--NRQI 143

Query: 237 V-GCEDG-----NVYSACRHGNKAGNVECYEGHEGPV--VGLSSHRAQGHIDFSHLYLTS 288
           V G  D      N    C++  +       E H   V  V  S        + S+  + S
Sbjct: 144 VSGSRDKTIKLWNTLGVCKYTVQ------DESHSEWVSCVRFSP-------NSSNPIIVS 190

Query: 289 -SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGR---VDLWNLNL 344
             +D  VK+WN+   K   +      Y+  V  SP + +L A+    G+     LW+LN 
Sbjct: 191 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCAS---GGKDGQAMLWDLNE 246

Query: 345 DTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK 379
              +      ++G   ++ + ++PN   LC     
Sbjct: 247 GKHL----YTLDGGDIINALCFSPNRYWLCAATGP 277

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 261 EGHEGPVVGLS-SHRAQGHIDFSHLYLTS-SYDWSVKLWNIKENKP--VHSFNEFRDYVM 316
            GHEGPV  +  +H   G I      L S SYD  V +W  +  +   +         V 
Sbjct: 52  TGHEGPVWRVDWAHPKFGTI------LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN 105

Query: 317 DVQWSP 322
            VQW+P
Sbjct: 106 SVQWAP 111

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 51/271 (18%), Positives = 88/271 (32%), Gaps = 42/271 (15%)

Query: 145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSP 204
           +++  V+ +T      L+   H  PV+ +     +    L S S DG++  W  E     
Sbjct: 37  IFE--VEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE----- 87

Query: 205 QETRDLQYNNKQTKNLA-----VLSLAF-PQNDVNNFVVGCEDGNV--YSACRHGNKAGN 256
                      Q    A     V S+ + P       +V   DG V       +G  +  
Sbjct: 88  --NGRWS----QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 141

Query: 257 VECYEGHEG--------PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP---- 304
           +   + H          P          G  +     +T   D  VK+W    +      
Sbjct: 142 I--IDAHAIGVNSASWAPATIEEDGEHNGTKESRKF-VTGGADNLVKIWKYNSDAQTYVL 198

Query: 305 VHSFNEFRDYVMDVQWSP--INPALFATVEVAGRVDLWNLNLDT-EVPATSAIVEGAP-A 360
             +     D+V DV WSP  +  +  A+V       +W  + +      T    E  P  
Sbjct: 199 ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV 258

Query: 361 LSRVTWTPNGTQLCVGDEKGAITMFDVGEVG 391
           L R +W+ +G  L +      +T++     G
Sbjct: 259 LWRASWSLSGNVLALSGGDNKVTLWKENLEG 289

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 6/70 (8%), Positives = 23/70 (32%), Gaps = 8/70 (11%)

Query: 261 EGHEGPVVGLSSHRAQGH------IDFSHL--YLTSSYDWSVKLWNIKENKPVHSFNEFR 312
           E  E     +++    G       +++     ++      ++ ++ I E  P        
Sbjct: 188 ELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHH 247

Query: 313 DYVMDVQWSP 322
             +  ++++ 
Sbjct: 248 GPISVLEFND 257

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 13/65 (20%)

Query: 261 EGHEGPVVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
            GH   +V  S         +     + ++ S D SV+LW++K+N  +         +  
Sbjct: 286 YGHSQSIVSAS---------WVGDDKV-ISCSMDGSVRLWSLKQNTLLALSIVDGVPIFA 335

Query: 318 VQWSP 322
            + S 
Sbjct: 336 GRISQ 340

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 31/205 (15%), Positives = 69/205 (33%), Gaps = 50/205 (24%)

Query: 137 GTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSW 196
           G  +G++ LW+     KT      L+   H  P+   SV   ++  ++IS+  +     W
Sbjct: 126 GVENGELRLWN-----KTGALLNVLN--FHRAPIV--SVKWNKDGTHIISMDVENVTILW 176

Query: 197 SLEMLSSPQETRDLQYNNKQTKNLA----------VLSLAFPQNDVNNFVVGCEDGNVY- 245
           ++    S    +  +       ++            + + +  +  + FV+    G ++ 
Sbjct: 177 NVI---SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFV 231

Query: 246 -----SACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLW 297
                                GH GP+  L          F+    L L++S D ++++W
Sbjct: 232 YQITEKTPTG--------KLIGHHGPISVLE---------FNDTNKLLLSASDDGTLRIW 274

Query: 298 NIKENKPVHSFNEFRDYVMDVQWSP 322
           +       + F      ++   W  
Sbjct: 275 HGGNGNSQNCFYGHSQSIVSASWVG 299

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 53/377 (14%), Positives = 98/377 (25%), Gaps = 129/377 (34%)

Query: 41  MTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQH-PELLLA-----SYHRNKEAPNE 94
           + G  K+   L  C   +  +   +  + +++    + PE +L       Y  +    + 
Sbjct: 158 VLGSGKTWVALDVCLS-YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 95  PDGV-------------------------CLI-----WNTKFKKTTPEFEFFCQSPVLSC 124
            D                           CL+      N K       F   C+  + + 
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA---FNLSCKILLTTR 273

Query: 125 CFAKFNPYLILGGTYSGQIVLWD-----TRVQKK--------TPVHRTPLSVMAHTHPVF 171
                +    L    +  I L       T  + K              P  V+  T+P  
Sbjct: 274 FKQVTD---FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-TNP-R 328

Query: 172 CMSVIGTQNAHNLISISNDGRLCSW--------------SLEMLSSPQETRDLQYNNKQT 217
            +S+I       L +  N      W              SL +L  P E R + +     
Sbjct: 329 RLSIIAESIRDGLATWDN------WKHVNCDKLTTIIESSLNVL-EPAEYRKM-F----- 375

Query: 218 KNLAVLSLAFPQN------------------DVNNFVVGCEDGNVYSACRHGNKAGNVEC 259
             L+V    FP +                  DV   V        YS      K   +  
Sbjct: 376 DRLSV----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK---YSLVEKQPKESTISI 428

Query: 260 YEGHEGPVVGLSSHRAQGH---IDFSHLYLTSSYDWS--VKLWN-----------IKENK 303
              +   +     +    H   +D  H  +  ++D    +  +            +K  +
Sbjct: 429 PSIYL-ELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 304 PVHSFNEFRDYVMDVQW 320
                  FR   +D ++
Sbjct: 486 HPERMTLFRMVFLDFRF 502

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 34/287 (11%), Positives = 79/287 (27%), Gaps = 49/287 (17%)

Query: 143 IVLWD--TRVQKKTPVHRTPLSVMA-HTHPVFCMS----VIGTQNAHNLISISNDGRLCS 195
           + LW+     ++ +      L  +      ++ +      +G +    L  + NDG L  
Sbjct: 83  VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLK----LACLGNDGILRL 138

Query: 196 WSLEMLSSPQETRDLQYNNKQTKNL--------AVLSLAF--PQNDVNNFVVGCEDGNV- 244
           +       P + R     ++             +   L++   +       V   +  + 
Sbjct: 139 YDA---LEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAII 195

Query: 245 --YSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS-------HLYLTSSYDWSVK 295
                     K        GH+  +  +S         ++        L  T   D  ++
Sbjct: 196 YQRGK---DGKLHVAAKLPGHKSLIRSIS---------WAPSIGRWYQLIATGCKDGRIR 243

Query: 296 LWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV 355
           ++ I E     +  E          S  +  + A        +              +  
Sbjct: 244 IFKITEKLSPLASEESLTNSNMFDNSA-DVDMDAQGRSDSNTEEKAELQSNLQVELLSEH 302

Query: 356 EG-APALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG-IACLKFITS 400
           +     +  V+W   GT L    + G + ++         C+  IT+
Sbjct: 303 DDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITA 349

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 17/73 (23%)

Query: 261 EGHEGPVVGLS-SHRAQGHIDFSHLYLTS-SYDWSVKLWNIKENKPVHSFNEF------- 311
             H+  +V +  +    G I      + S SYD +VKLW    ++   S   +       
Sbjct: 54  RAHDSSIVAIDWASPEYGRI------IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN 107

Query: 312 --RDYVMDVQWSP 322
             +  +  V+++P
Sbjct: 108 DSKGSLYSVKFAP 120

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 24/221 (10%), Positives = 57/221 (25%), Gaps = 31/221 (14%)

Query: 145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSP 204
           ++                  AH   +  +     +    + S S D  +  W  +    P
Sbjct: 37  VFKLDKDTSNWELSDSWR--AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED----P 90

Query: 205 QETRDLQYNNKQTKNL-----AVLSLAF-PQNDVNNFVVGCEDGNV-----------YSA 247
            +         +   L     ++ S+ F P +          DG +            S 
Sbjct: 91  DQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSW 150

Query: 248 CRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP--V 305
                          H      LS   ++   +       S+ + ++     K+ K    
Sbjct: 151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE---KLAVSALEQAIIYQRGKDGKLHVA 207

Query: 306 HSFNEFRDYVMDVQWSPINPALFATVEVA---GRVDLWNLN 343
                 +  +  + W+P     +  +      GR+ ++ + 
Sbjct: 208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT 248

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 11/64 (17%)

Query: 261 EGHEGPV--VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDV 318
            GH G +             I      +TSS D +  LW+I+  +   +F      VM +
Sbjct: 140 AGHTGYLSCCRFLD---DNQI------VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL 190

Query: 319 QWSP 322
             +P
Sbjct: 191 SLAP 194

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 12/65 (18%)

Query: 261 EGHEGPVVGLSSHRAQGHIDFSH---LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
            GH G V+ LS          +    L+++ + D S KLW+++E     +F      +  
Sbjct: 181 TGHTGDVMSLS---------LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 231

Query: 318 VQWSP 322
           + + P
Sbjct: 232 ICFFP 236

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 29/265 (10%), Positives = 63/265 (23%), Gaps = 75/265 (28%)

Query: 133 LILGGTYSGQIVLWDT----RVQKKTPVHRTPLSVMAHTHPVFCMSV---IGTQNAHNLI 185
           L+   ++SG ++ +        +K        L      H  + +          +H L+
Sbjct: 83  LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLV 142

Query: 186 SISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNN--------FVV 237
           +    G    W     +    +  L ++        V S   P     +           
Sbjct: 143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIAT 202

Query: 238 GCEDGNVY----SACRHGNKAGNVECYEGHEGPV-------------------------- 267
           G  +G V     S  R      +      +   +                          
Sbjct: 203 GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL 262

Query: 268 -----------------VGLSSHRAQGH------IDFSH--LYLTS-SYDWSVKLWNIKE 301
                               +S     H      + F+     L S  +D  ++ W++K 
Sbjct: 263 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 322

Query: 302 NKPVHSFNEFRDYVMD----VQWSP 322
            + + + N   D +      +    
Sbjct: 323 KERITTLNMHCDDIEIEEDILAVDE 347

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 12/65 (18%)

Query: 261 EGHEGPVVGLSSHRAQGHIDFSH--LYLTS-SYDWSVKLWNIKENKPVHSFNEFRDYVMD 317
            GH   V+ ++         F     +  S S D SVK+W++     VH+F + +D V  
Sbjct: 245 SGHASWVLNVA---------FCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWG 295

Query: 318 VQWSP 322
           V+++ 
Sbjct: 296 VKYNG 300

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 40.5 bits (96), Expect = 6e-04
 Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 41/156 (26%)

Query: 182 HNLISISNDGRLCSWSLEMLSSPQETRDLQ-YNNKQTKNLAVLSLAFPQN---DVNNFVV 237
           H+    S +      + +        +  Q +++      A+ S+A+  N   +    V 
Sbjct: 3   HHHHHSSRENLYFQGTNQ---YGILFKQEQAHDD------AIWSVAWGTNKKENSETVVT 53

Query: 238 GCEDG-----NVYSACRHGNKAGNVECY---EGHEGPVVGLSSHRAQGHIDFSH---LYL 286
           G  D                    ++     EGH+  VV          +D SH   +  
Sbjct: 54  GSLDDLVKVWKWRD--------ERLDLQWSLEGHQLGVVS---------VDISHTLPIAA 96

Query: 287 TSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP 322
           +SS D  ++LW+++  K + S +        + +SP
Sbjct: 97  SSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP 132

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 34/202 (16%), Positives = 68/202 (33%), Gaps = 35/202 (17%)

Query: 136 GGTYSGQIVLWDTRV-QKKTPVHRTPLSVMA-------HTHPVFCMSVIGTQNAHNLISI 187
           G     +  L D  + Q    V      VM        H + V CM     ++   ++S 
Sbjct: 25  GKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW--CKDKRRIVSS 82

Query: 188 SNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF-PQNDVNNFVVGCEDGNV-- 244
           S DG++  W      +  +   +           V++ A+ P         G  D     
Sbjct: 83  SQDGKVIVWDSF---TTNKEHAVTMPCT-----WVMACAYAP--SGCAIACGGLDNKCSV 132

Query: 245 --YSACRHGNKAGNVECYEGHEGPV--VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIK 300
              +  ++ N A   +    H   +     ++           + LT+S D +  LW+++
Sbjct: 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-------SDMQI-LTASGDGTCALWDVE 184

Query: 301 ENKPVHSFNEFRDYVMDVQWSP 322
             + + SF+     V+ +  +P
Sbjct: 185 SGQLLQSFHGHGADVLCLDLAP 206

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 40.9 bits (97), Expect = 5e-04
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 261 EGHEGPV--VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDV 318
            GH   V  V  S        +   L  +SS D  +K+W   + K   + +  +  + DV
Sbjct: 20  AGHTKAVSSVKFSP-------NGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71

Query: 319 QWSP 322
            WS 
Sbjct: 72  AWSS 75

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 24/204 (11%), Positives = 57/204 (27%), Gaps = 47/204 (23%)

Query: 134 ILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVI-----GTQNAHNLISIS 188
           +L          +    +    +    + V+ ++  V           G+     L    
Sbjct: 20  VLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFEKVGSH----LYKAR 75

Query: 189 NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF-PQNDVNNFVVGCEDGNVY-- 245
            DG    ++         ++ L+  +                  +  F++G  +G++   
Sbjct: 76  LDGHDFLFNTI---IRDGSKMLKRAD------YTAVDTAKL--QMRRFILGTTEGDIKVL 124

Query: 246 ----SACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLWN 298
               +           E  + H   +  L          F       ++SS D  +K+W+
Sbjct: 125 DSNFNLQ--------REIDQAHVSEITKLK---------FFPSGEALISSSQDMQLKIWS 167

Query: 299 IKENKPVHSFNEFRDYVMDVQWSP 322
           +K+     +    R  V D+    
Sbjct: 168 VKDGSNPRTLIGHRATVTDIAIID 191

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 40.2 bits (95), Expect = 8e-04
 Identities = 33/207 (15%), Positives = 68/207 (32%), Gaps = 36/207 (17%)

Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG 177
           Q  V S  F      +++ G++     +W              L   AH   V+   V+ 
Sbjct: 104 QGNVCSLSF---QDGVVISGSWDKTAKVWKEGSLVYN------LQ--AHNASVWDAKVV- 151

Query: 178 TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV 237
           + + +  ++ S D  +  W  +     +  +     +       V  LA   +   +F+ 
Sbjct: 152 SFSENKFLTASADKTIKLWQND-----KVIKTFSGIHND----VVRHLAVVDD--GHFIS 200

Query: 238 GCEDGNVYSACRHGN-KAGN-VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVK 295
              DG +    +  +   G+ +  YEGHE  V  +      G I      ++   D +V+
Sbjct: 201 CSNDGLI----KLVDMHTGDVLRTYEGHESFVYCIKLLP-NGDI------VSCGEDRTVR 249

Query: 296 LWNIKENKPVHSFNEFRDYVMDVQWSP 322
           +W+ +              +  V    
Sbjct: 250 IWSKENGSLKQVITLPAISIWSVDCMS 276

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	401
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.88
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.83
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.82
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.81
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.8
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.79
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.78
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.77
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.77
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.77
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.77
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.75
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.74
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.74
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.73
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.73
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.73
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.72
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.72
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.71
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.68
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.68
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.68
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.66
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.66
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.65
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.65
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.64
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.63
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.63
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.63
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.61
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.61
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.6
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.6
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.58
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.57
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.57
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.56
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.55
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.53
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.53
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.51
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.5
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.49
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.47
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.46
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.46
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.44
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.44
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.43
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.41
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.38
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.38
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.38
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.34
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.31
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.26
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.26
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.25
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.21
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.16
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.13
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.12
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.1
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.1
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.09
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.08
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.08
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.05
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.04
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.99
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.98
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.98
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.93
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.91
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.87
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.86
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.86
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.85
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.76
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.76
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.76
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.76
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.76
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.73
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.73
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.72
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.72
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.71
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.67
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.66
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.64
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.62
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.61
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.61
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.6
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.6
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.59
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.57
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.57
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.57
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.56
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.55
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.54
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.53
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.5
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.48
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.48
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.44
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.42
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.41
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.36
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.35
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.35
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.34
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.34
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.33
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.27
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.26
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.26
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.25
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.23
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.2
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.18
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.17
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.16
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.05
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.99
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.96
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.94
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.93
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.91
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.91
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.85
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.82
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.81
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.81
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.77
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.72
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.68
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.68
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.64
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.63
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.6
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.57
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.57
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.56
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.47
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.45
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.36
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.23
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.18
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.16
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.13
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.96
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.96
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.87
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.84
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.82
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.65
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.61
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.6
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.57
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.55
3ott_A	758	Two-component system sensor histidine kinase; beta	96.48
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.45
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.44
3ott_A	758	Two-component system sensor histidine kinase; beta	96.43
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.29
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.28
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.26
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.02
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.02
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.88
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.77
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.41
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.44
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	94.09
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.68
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.08
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.47
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.34
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.84
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	90.51
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	89.62
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	87.79
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	86.77
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	86.67
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	86.18
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	84.12
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	83.13
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	82.38
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	82.18
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	80.56

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.4e-48  Score=343.48  Aligned_cols=302  Identities=14%  Similarity=0.147  Sum_probs=237.5

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC---ceEEEecCCCeeEEEEeCCCCceEEEEec
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT---PEFEFFCQSPVLSCCFAKFNPYLILGGTY  139 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~g~~  139 (401)
                      .|.+.|.+++|+|||++|++++....    .--|+.|++|+..++...   ......|...|++++|+|++ . +++++.
T Consensus        40 ~H~~~V~~v~fSpDG~~las~s~d~~----~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~-~-~l~~s~  113 (357)
T 4g56_B           40 CMEVQIGAVRYRRDGALLLAASSLSS----RTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK-G-ILVASD  113 (357)
T ss_dssp             CCCSEEEEEEECSSSCEEEEEECSSS----SSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-E-EEEEET
T ss_pred             cccCCEEEEEECCCCCEEEEEcCCCC----ccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-C-EEEEEC
Confidence            47789999999999999999982110    001789999998765432   23445678899999999976 4 445678


Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                      ||+|+|||+.+++......  ....+|...|++++|  +|++.+|++++.|+.|++||+++.   .....     +.+|.
T Consensus       114 dg~v~lWd~~~~~~~~~~~--~~~~~h~~~V~~v~~--spdg~~l~sgs~dg~v~iwd~~~~---~~~~~-----~~~h~  181 (357)
T 4g56_B          114 SGAVELWEILEKESLLVNK--FAKYEHDDIVKTLSV--FSDGTQAVSGGKDFSVKVWDLSQK---AVLKS-----YNAHS  181 (357)
T ss_dssp             TSCEEEC--------CCCC--EEECCCSSCEEEEEE--CSSSSEEEEEETTSCEEEEETTTT---EEEEE-----ECCCS
T ss_pred             CCEEEEeeccccceeEEEe--eccCCCCCCEEEEEE--CCCCCEEEEEeCCCeEEEEECCCC---cEEEE-----EcCCC
Confidence            9999999998876543222  234589999999999  999999999999999999999752   22222     34588


Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      ..|++++|+|.....+++++.|+.|++||++..+......+..|...+.+++|+|+.     +.+|++|+.|+.|++||+
T Consensus       182 ~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~-----~~~la~g~~d~~i~~wd~  256 (357)
T 4g56_B          182 SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEK-----DDTFACGDETGNVSLVNI  256 (357)
T ss_dssp             SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTS-----TTEEEEEESSSCEEEEES
T ss_pred             CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcc-----cceEEEeecccceeEEEC
Confidence            899999999544568999999999999999865443334455678889999999985     679999999999999999


Q ss_pred             eCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecC-CCcEEEEEec
Q psy17342        300 KENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTP-NGTQLCVGDE  378 (401)
Q Consensus       300 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~  378 (401)
                      ++++++.++..|...|++++|+|++..+|++++.|++|+|||+++++.+.    ..+|...|++++|+| ++.+|++++.
T Consensus       257 ~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~----~~~H~~~V~~vafsP~d~~~l~s~s~  332 (357)
T 4g56_B          257 KNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR----DLSHRDFVTGVAWSPLDHSKFTTVGW  332 (357)
T ss_dssp             SCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE----ECCCSSCEEEEEECSSSTTEEEEEET
T ss_pred             CCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE----ECCCCCCEEEEEEeCCCCCEEEEEcC
Confidence            99999999999999999999999986689999999999999998865432    247889999999998 7999999999


Q ss_pred             CCcEEEEEeccCc
Q psy17342        379 KGAITMFDVGEVG  391 (401)
Q Consensus       379 dg~v~iw~~~~~~  391 (401)
                      ||+|++|++.+.+
T Consensus       333 Dg~v~iW~~~~~~  345 (357)
T 4g56_B          333 DHKVLHHHLPSEG  345 (357)
T ss_dssp             TSCEEEEECC---
T ss_pred             CCeEEEEECCCCC
Confidence            9999999997754

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.6e-48  Score=337.46  Aligned_cols=292  Identities=16%  Similarity=0.129  Sum_probs=233.1

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCc-------C---CCCCceEEEecCCCeeEEEEeCCCCce
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTK-------F---KKTTPEFEFFCQSPVLSCCFAKFNPYL  133 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~-------~---~~~~~~~~~~~~~~v~~~~~~~~~~~~  133 (401)
                      +.+.|.+++|+|||++|++++           |+++++||..       .   ..........+...|.+++|+|++  .
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~s-----------d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~   95 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGAS-----------SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER--G   95 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEE-----------CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT--E
T ss_pred             ccCCEEEEEECCCCCEEEEEe-----------CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC--e
Confidence            457799999999999888777           5566666521       1   112223445567899999999964  6


Q ss_pred             EEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccc
Q psy17342        134 ILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYN  213 (401)
Q Consensus       134 l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~  213 (401)
                      |++|+.||+|+|||+.+++......  ....+|.+.|++++|  +|++.+|++++.|++|++||+++.   .....    
T Consensus        96 l~~~s~dg~v~lWd~~~~~~~~~~~--~~~~~H~~~V~~v~~--spdg~~l~sgs~d~~i~iwd~~~~---~~~~~----  164 (344)
T 4gqb_B           96 ILVASDSGAVELWELDENETLIVSK--FCKYEHDDIVSTVSV--LSSGTQAVSGSKDICIKVWDLAQQ---VVLSS----  164 (344)
T ss_dssp             EEEEETTSEEEEEEECTTSSCEEEE--EEEECCSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTT---EEEEE----
T ss_pred             EEEEECCCEEEEEeccCCCceeEee--ccccCCCCCEEEEEE--CCCCCEEEEEeCCCeEEEEECCCC---cEEEE----
Confidence            7788999999999999887654332  234689999999999  999999999999999999999752   12222    


Q ss_pred             cccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeee--cCCCCceeeeecCccCCCCCCCcEEEEEeCC
Q psy17342        214 NKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY--EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD  291 (401)
Q Consensus       214 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d  291 (401)
                       +.+|...|++++|+|.+..+|++++.|+.|++||++..+  ....+  ..|...+.+++|+|..     +.+|++|+.|
T Consensus       165 -~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~p~~-----~~~l~sg~~d  236 (344)
T 4gqb_B          165 -YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK--PASQIGCSAPGYLPTSLAWHPQQ-----SEVFVFGDEN  236 (344)
T ss_dssp             -ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS--CEEECC----CCCEEEEEECSSC-----TTEEEEEETT
T ss_pred             -EcCcCCceEEEEecCCCCCceeeeccccccccccccccc--eeeeeecceeeccceeeeecCCC-----CcceEEeccC
Confidence             445899999999995445678999999999999998544  44444  3466679999999975     6899999999


Q ss_pred             CeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc
Q psy17342        292 WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT  371 (401)
Q Consensus       292 ~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  371 (401)
                      +.|++||+++++++.++.+|...|++++|+|++..+|++++.|++|+|||+++++..    ...+|...|++++|+|+++
T Consensus       237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~----~~~~H~~~V~~v~~sp~~~  312 (344)
T 4gqb_B          237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF----RSQAHRDFVRDATWSPLNH  312 (344)
T ss_dssp             SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE----EECCCSSCEEEEEECSSST
T ss_pred             CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE----EEcCCCCCEEEEEEeCCCC
Confidence            999999999999999999999999999999998668999999999999999876532    2357889999999999986


Q ss_pred             -EEEEEecCCcEEEEEeccCc
Q psy17342        372 -QLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       372 -~l~~~~~dg~v~iw~~~~~~  391 (401)
                       +|++++.||+|++|++.+..
T Consensus       313 ~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          313 SLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             TEEEEEETTSCEEEEECCC--
T ss_pred             eEEEEEcCCCeEEEEECCCCC
Confidence             56789999999999998753

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=9.1e-48  Score=344.83  Aligned_cols=291  Identities=13%  Similarity=0.149  Sum_probs=250.9

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      +|..+|++++|+|+++.|++++          .|++|+|||+.+++....+ ..|...|.+++|+|++ .+|++|+.|++
T Consensus       106 gh~~~V~~~~~~p~~~~l~s~s----------~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~~~-~~l~sgs~D~~  173 (410)
T 1vyh_C          106 GHRSPVTRVIFHPVFSVMVSAS----------EDATIKVWDYETGDFERTL-KGHTDSVQDISFDHSG-KLLASCSADMT  173 (410)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEE----------SSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTTS-SEEEEEETTSC
T ss_pred             ccCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcCCC-CEEEEEeCCCe
Confidence            5889999999999999999999          7999999999987766443 3578999999999977 79999999999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      |++||+.+.+..      ..+.+|...|.+++|  +|++.+|++++.|++|++||++... .  ...     +.+|...|
T Consensus       174 i~iwd~~~~~~~------~~~~~h~~~V~~v~~--~p~~~~l~s~s~D~~i~~wd~~~~~-~--~~~-----~~~h~~~v  237 (410)
T 1vyh_C          174 IKLWDFQGFECI------RTMHGHDHNVSSVSI--MPNGDHIVSASRDKTIKMWEVQTGY-C--VKT-----FTGHREWV  237 (410)
T ss_dssp             CCEEETTSSCEE------ECCCCCSSCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCC-E--EEE-----EECCSSCE
T ss_pred             EEEEeCCCCcee------EEEcCCCCCEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCc-E--EEE-----EeCCCccE
Confidence            999999876543      235789999999999  8999999999999999999997632 1  112     34588899


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCC--------------CCCCcEEEEE
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGH--------------IDFSHLYLTS  288 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~--------------~~~~~~l~s~  288 (401)
                      .++.++ +++.++++|+.|+.|++||+...  .....+.+|...|.+++|+|....              ...+.+|++|
T Consensus       238 ~~~~~~-~~g~~l~s~s~D~~v~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg  314 (410)
T 1vyh_C          238 RMVRPN-QDGTLIASCSNDQTVRVWVVATK--ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG  314 (410)
T ss_dssp             EEEEEC-TTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred             EEEEEC-CCCCEEEEEcCCCeEEEEECCCC--ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence            999999 89999999999999999999743  467788899999999999986210              0004689999


Q ss_pred             eCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecC
Q psy17342        289 SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTP  368 (401)
Q Consensus       289 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~  368 (401)
                      +.|+.|++||+++++++..+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+   ..|...|++++|+|
T Consensus       315 s~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~i~vwd~~~~~~~~~~---~~h~~~v~~l~~~~  390 (410)
T 1vyh_C          315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRCMKTL---NAHEHFVTSLDFHK  390 (410)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTSCCCEEE---ECCSSCEEEEEECS
T ss_pred             eCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceEEEE---cCCCCcEEEEEEcC
Confidence            9999999999999999999999999999999999997 7899999999999999887766554   46788999999999


Q ss_pred             CCcEEEEEecCCcEEEEEec
Q psy17342        369 NGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       369 ~g~~l~~~~~dg~v~iw~~~  388 (401)
                      ++.+|++|+.||.|++|+++
T Consensus       391 ~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          391 TAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             SSSCEEEEETTSEEEEEC--
T ss_pred             CCCEEEEEeCCCcEEEEeCC
Confidence            99999999999999999864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.8e-48  Score=333.31  Aligned_cols=292  Identities=18%  Similarity=0.299  Sum_probs=248.3

Q ss_pred             eeccccccccceEEEEecCC----CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-EecCCCeeEEEEeCCCC
Q psy17342         57 FFDEKWSKNRNVTYMDWSTQ----HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-FFCQSPVLSCCFAKFNP  131 (401)
Q Consensus        57 ~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~  131 (401)
                      .+.....|.+.|.+++|+|+    +..|++|+          .|++|+||++..++...... .+|...|.+++|+|++ 
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs----------~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~-   92 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGS----------LDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL-   92 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEE----------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS-
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEc----------CCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC-
Confidence            33444579999999999985    55799999          79999999998654333332 3478899999999977 


Q ss_pred             ceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccc
Q psy17342        132 YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQ  211 (401)
Q Consensus       132 ~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~  211 (401)
                      .++++|+.|+.|++||+.+++..      ..+..|...+.+++|  +|++.+|++++.||.|++|+++...   ....+ 
T Consensus        93 ~~l~s~s~D~~i~lWd~~~~~~~------~~~~~~~~~~~~~~~--spdg~~l~~g~~dg~v~i~~~~~~~---~~~~~-  160 (321)
T 3ow8_A           93 PIAASSSLDAHIRLWDLENGKQI------KSIDAGPVDAWTLAF--SPDSQYLATGTHVGKVNIFGVESGK---KEYSL-  160 (321)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEE------EEEECCTTCCCCEEE--CTTSSEEEEECTTSEEEEEETTTCS---EEEEE-
T ss_pred             CEEEEEeCCCcEEEEECCCCCEE------EEEeCCCccEEEEEE--CCCCCEEEEEcCCCcEEEEEcCCCc---eeEEe-
Confidence            79999999999999999887643      224578888999999  9999999999999999999997532   22222 


Q ss_pred             cccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC
Q psy17342        212 YNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD  291 (401)
Q Consensus       212 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d  291 (401)
                          ..+...|.+++|+ |++++|++|+.|+.|++||++.  .+.+..+.+|..+|.+++|+|+      +++|++++.|
T Consensus       161 ----~~~~~~v~~~~~s-pdg~~lasg~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~spd------~~~l~s~s~d  227 (321)
T 3ow8_A          161 ----DTRGKFILSIAYS-PDGKYLASGAIDGIINIFDIAT--GKLLHTLEGHAMPIRSLTFSPD------SQLLVTASDD  227 (321)
T ss_dssp             ----ECSSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCCCEEEECTT------SCEEEEECTT
T ss_pred             ----cCCCceEEEEEEC-CCCCEEEEEcCCCeEEEEECCC--CcEEEEEcccCCceeEEEEcCC------CCEEEEEcCC
Confidence                2366789999999 8999999999999999999974  4467889999999999999998      7999999999


Q ss_pred             CeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc
Q psy17342        292 WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT  371 (401)
Q Consensus       292 ~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  371 (401)
                      +.|++||+++++.+..+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+   ..|...|++++|+|+|+
T Consensus       228 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~---~~h~~~v~~v~~s~~g~  303 (321)
T 3ow8_A          228 GYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTRTCVHTF---FDHQDQVWGVKYNGNGS  303 (321)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTSS
T ss_pred             CeEEEEECCCcceeEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCEEEEEE---cCCCCcEEEEEECCCCC
Confidence            9999999999999999999999999999999997 8999999999999999987654443   46788999999999999


Q ss_pred             EEEEEecCCcEEEEEec
Q psy17342        372 QLCVGDEKGAITMFDVG  388 (401)
Q Consensus       372 ~l~~~~~dg~v~iw~~~  388 (401)
                      +|++++.||.|++||+.
T Consensus       304 ~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          304 KIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEEEETTCCEEEEECC
T ss_pred             EEEEEeCCCeEEEEeCC
Confidence            99999999999999963

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=7e-47  Score=331.46  Aligned_cols=299  Identities=14%  Similarity=0.208  Sum_probs=242.2

Q ss_pred             cccc-ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE--EecCCCeeEEEEeCCCCceEEEEec
Q psy17342         63 SKNR-NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE--FFCQSPVLSCCFAKFNPYLILGGTY  139 (401)
Q Consensus        63 ~~~~-~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~g~~  139 (401)
                      .|.. .|.+++|+|+|++|++++          .|++|+|||+.++.......  ..|...|.+++|+|++ .+|++|+.
T Consensus        13 ~h~~~~v~~l~~sp~g~~las~~----------~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~s~   81 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAGTLLASCG----------GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG-NYLASASF   81 (345)
T ss_dssp             CSTTSCEEEEEECTTSSCEEEEE----------TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS-SEEEEEET
T ss_pred             CCCCCcEEEEEECCCCCEEEEEc----------CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC-CEEEEEEC
Confidence            3545 899999999999999999          79999999998664332222  3478899999999977 79999999


Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                      |+.+++|++........    ..+.+|...|.+++|  +|++.+|++++.|++|++||++..........     ..+|.
T Consensus        82 D~~v~iw~~~~~~~~~~----~~~~~h~~~v~~v~~--sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-----~~~h~  150 (345)
T 3fm0_A           82 DATTCIWKKNQDDFECV----TTLEGHENEVKSVAW--APSGNLLATCSRDKSVWVWEVDEEDEYECVSV-----LNSHT  150 (345)
T ss_dssp             TSCEEEEEECCC-EEEE----EEECCCSSCEEEEEE--CTTSSEEEEEETTSCEEEEEECTTSCEEEEEE-----ECCCC
T ss_pred             CCcEEEEEccCCCeEEE----EEccCCCCCceEEEE--eCCCCEEEEEECCCeEEEEECCCCCCeEEEEE-----ecCcC
Confidence            99999999877643221    235789999999999  99999999999999999999975332221212     34588


Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      ..|.+++|+ |++.+|++|+.|+.|++|+.+.....+...+.+|...|.+++|+|+      +++|++++.|++|++||.
T Consensus       151 ~~v~~~~~~-p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~------g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          151 QDVKHVVWH-PSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS------GQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             SCEEEEEEC-SSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEEE
T ss_pred             CCeEEEEEC-CCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCC------CCEEEEEeCCCeEEEecc
Confidence            899999999 7999999999999999999875543455678899999999999998      799999999999999997


Q ss_pred             eCC---------------CceEEEee-cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCC--cceE----EeecC
Q psy17342        300 KEN---------------KPVHSFNE-FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV--PATS----AIVEG  357 (401)
Q Consensus       300 ~~~---------------~~~~~~~~-~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~----~~~~~  357 (401)
                      ...               +++..+.+ |...|.+++|+|++. .|++++.|+.|++|+.......  +.+.    ...+|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h  302 (345)
T 3fm0_A          224 YLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH  302 (345)
T ss_dssp             ECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC-CEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS
T ss_pred             ccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc
Confidence            542               12334444 788999999999997 7899999999999998765322  1211    12357


Q ss_pred             CCCeEEEEecCCC-cEEEEEecCCcEEEEEeccCc
Q psy17342        358 APALSRVTWTPNG-TQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       358 ~~~v~~~~~s~~g-~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      ...|++++|+|++ .+||+|+.||.|++|++.+++
T Consensus       303 ~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          303 SQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE  337 (345)
T ss_dssp             SSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred             cCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence            7899999999998 599999999999999999874

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.5e-46  Score=323.56  Aligned_cols=291  Identities=19%  Similarity=0.261  Sum_probs=242.1

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      .|.+.|.+++|+|++++|++++          .|+.|++||++++.....+ ..|..+|.+++|+|++ ++|++|+.|+.
T Consensus        11 ~h~~~V~~~~fsp~~~~l~s~~----------~dg~v~lWd~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~s~s~d~~   78 (304)
T 2ynn_A           11 NRSDRVKGIDFHPTEPWVLTTL----------YSGRVELWNYETQVEVRSI-QVTETPVRAGKFIARK-NWIIVGSDDFR   78 (304)
T ss_dssp             EECSCEEEEEECSSSSEEEEEE----------TTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGGG-TEEEEEETTSE
T ss_pred             CCCCceEEEEECCCCCEEEEEc----------CCCcEEEEECCCCceeEEe-eccCCcEEEEEEeCCC-CEEEEECCCCE
Confidence            3668999999999999999999          7999999999977655433 3468899999999977 79999999999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      |++||+.+++..      ..+.+|...|.+++|  +|++.+|++++.|++|++||++.......  .     +.+|...|
T Consensus        79 i~vwd~~~~~~~------~~~~~h~~~v~~~~~--~~~~~~l~sgs~D~~v~lWd~~~~~~~~~--~-----~~~h~~~v  143 (304)
T 2ynn_A           79 IRVFNYNTGEKV------VDFEAHPDYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWALEQ--T-----FEGHEHFV  143 (304)
T ss_dssp             EEEEETTTCCEE------EEEECCSSCEEEEEE--CSSSSEEEEEETTSCEEEEEGGGTTEEEE--E-----ECCCCSCE
T ss_pred             EEEEECCCCcEE------EEEeCCCCcEEEEEE--cCCCCEEEEECCCCeEEEEECCCCcchhh--h-----hcccCCcE
Confidence            999999987653      335789999999999  99999999999999999999975221111  1     34588999


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN  302 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  302 (401)
                      .+++|+|.++..|++|+.|+.|++||++.... ......+|...+..+.++|...    +.+|++++.|++|++||++++
T Consensus       144 ~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~s~D~~i~iWd~~~~  218 (304)
T 2ynn_A          144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-NFTLTTGQERGVNYVDYYPLPD----KPYMITASDDLTIKIWDYQTK  218 (304)
T ss_dssp             EEEEECTTCTTEEEEEETTSEEEEEETTCSSC-SEEEECCCTTCEEEEEECCSTT----CCEEEEEETTSEEEEEETTTT
T ss_pred             EEEEECCCCCCEEEEEeCCCeEEEEECCCCCc-cceeccCCcCcEEEEEEEEcCC----CCEEEEEcCCCeEEEEeCCCC
Confidence            99999965789999999999999999975432 2233346778899999987421    579999999999999999999


Q ss_pred             CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc--EEEEEecCC
Q psy17342        303 KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT--QLCVGDEKG  380 (401)
Q Consensus       303 ~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~dg  380 (401)
                      +++.++.+|...|.+++|+|+++ +|++++.||.|++||+.+++....+   ..+...+++++|+|++.  ++++|+.||
T Consensus       219 ~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~asg~~~g  294 (304)
T 2ynn_A          219 SCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTL---NVGLERSWCIATHPTGRKNYIASGFDNG  294 (304)
T ss_dssp             EEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEE---CCSSSSEEEEEECTTCGGGCEEEEETTE
T ss_pred             ccceeeCCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeec---cCCCccEEEEEECCCCCceEEEEecCCc
Confidence            99999999999999999999997 8999999999999999987755443   35667899999999875  577777666


Q ss_pred             cEEEEEeccC
Q psy17342        381 AITMFDVGEV  390 (401)
Q Consensus       381 ~v~iw~~~~~  390 (401)
                       +.+|++.+.
T Consensus       295 -~~~~~~~~~  303 (304)
T 2ynn_A          295 -FTVLSLGND  303 (304)
T ss_dssp             -EEEEECC--
T ss_pred             -eEEEEeccC
Confidence             788888653

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.4e-46  Score=325.23  Aligned_cols=286  Identities=16%  Similarity=0.258  Sum_probs=242.9

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      +|.+.|.+++|+|++++|++++          .|++|++||..+++....+ ..|...|.+++|+|++ .+|++|+.|+.
T Consensus        53 gH~~~v~~~~~s~d~~~l~s~s----------~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~~~~s~~~-~~l~s~~~d~~  120 (340)
T 1got_B           53 GHLAKIYAMHWGTDSRLLLSAS----------QDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAPSG-NYVACGGLDNI  120 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEE----------TTTEEEEEETTTCCEEEEE-ECSSSCEEEEEECTTS-SEEEEEETTCE
T ss_pred             CCCCceEEEEECCCCCEEEEEe----------CCCcEEEEECCCCCcceEe-ecCCccEEEEEECCCC-CEEEEEeCCCe
Confidence            5779999999999999999999          8999999999877655443 3468899999999977 79999999999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      |++|++.+.......  ...+.+|.+.|.++.|  ++++. +++++.|++|++||+++..   ....     +.+|...|
T Consensus       121 v~iw~~~~~~~~~~~--~~~~~~h~~~v~~~~~--~~~~~-l~s~s~d~~i~~wd~~~~~---~~~~-----~~~h~~~v  187 (340)
T 1got_B          121 CSIYNLKTREGNVRV--SRELAGHTGYLSCCRF--LDDNQ-IVTSSGDTTCALWDIETGQ---QTTT-----FTGHTGDV  187 (340)
T ss_dssp             EEEEETTTCSBSCEE--EEEEECCSSCEEEEEE--EETTE-EEEEETTSCEEEEETTTTE---EEEE-----ECCCSSCE
T ss_pred             EEEEECccCCCccee--EEEecCCCccEEEEEE--CCCCc-EEEEECCCcEEEEECCCCc---EEEE-----EcCCCCce
Confidence            999999876432211  1235689999999999  66664 8999999999999997522   1222     34588899


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN  302 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  302 (401)
                      .+++|+ |++.++++|+.|+.|++||++.  ......+.+|...|++++|+|+      +++|++|+.|++|++||++++
T Consensus       188 ~~~~~~-~~~~~l~sg~~d~~v~~wd~~~--~~~~~~~~~h~~~v~~v~~~p~------~~~l~s~s~d~~v~iwd~~~~  258 (340)
T 1got_B          188 MSLSLA-PDTRLFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAICFFPN------GNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             EEEEEC-TTSSEEEEEETTSCEEEEETTT--CSEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTT
T ss_pred             EEEEEC-CCCCEEEEEeCCCcEEEEECCC--CeeEEEEcCCcCCEEEEEEcCC------CCEEEEEcCCCcEEEEECCCC
Confidence            999999 7999999999999999999984  4467889999999999999998      799999999999999999988


Q ss_pred             CceEEEee--cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCC
Q psy17342        303 KPVHSFNE--FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG  380 (401)
Q Consensus       303 ~~~~~~~~--~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  380 (401)
                      +.+..+..  +...|.+++|+|+++ +|++|+.|+.|++||+.+++....+   .+|...|.+++|+|+|++|++|+.||
T Consensus       259 ~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~~---~~h~~~v~~~~~s~dg~~l~s~s~D~  334 (340)
T 1got_B          259 QELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVL---AGHDNRVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             EEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEE---ECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             cEEEEEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEcccCcEeeEe---ecCCCcEEEEEEcCCCCEEEEEcCCc
Confidence            87777653  234799999999997 8999999999999999887654443   47889999999999999999999999


Q ss_pred             cEEEEE
Q psy17342        381 AITMFD  386 (401)
Q Consensus       381 ~v~iw~  386 (401)
                      .|++||
T Consensus       335 ~i~iWd  340 (340)
T 1got_B          335 FLKIWN  340 (340)
T ss_dssp             CEEEEC
T ss_pred             cEEecC
Confidence            999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=7.8e-46  Score=325.72  Aligned_cols=290  Identities=18%  Similarity=0.301  Sum_probs=243.9

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      +|...|.+++|+|++++|++++          .|++|+|||..+++....+. .+...|.+++|+|++ .++++|+.|+.
T Consensus        62 gH~~~V~~~~~s~d~~~l~s~s----------~Dg~v~vWd~~~~~~~~~~~-~~~~~v~~~~~sp~g-~~lasg~~d~~  129 (354)
T 2pbi_B           62 GHGNKVLCMDWCKDKRRIVSSS----------QDGKVIVWDSFTTNKEHAVT-MPCTWVMACAYAPSG-CAIACGGLDNK  129 (354)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEE----------TTSEEEEEETTTCCEEEEEE-CSSSCCCEEEECTTS-SEEEEESTTSE
T ss_pred             CCCCeEEEEEECCCCCEEEEEe----------CCCeEEEEECCCCCcceEEe-cCCCCEEEEEECCCC-CEEEEeeCCCC
Confidence            5889999999999999999999          89999999998766554433 357789999999987 79999999999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      +++|++..............+..|...|.+++|  ++++..|++++.|++|++||++... .  ...     +.+|...|
T Consensus       130 i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~t~s~D~~v~lwd~~~~~-~--~~~-----~~~h~~~v  199 (354)
T 2pbi_B          130 CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF--TNSDMQILTASGDGTCALWDVESGQ-L--LQS-----FHGHGADV  199 (354)
T ss_dssp             EEEEECCCCTTCCSGGGCEEEEECSSCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCC-E--EEE-----EECCSSCE
T ss_pred             EEEEEEeccccccccccceeeeccCCcEEEEEE--eCCCCEEEEEeCCCcEEEEeCCCCe-E--EEE-----EcCCCCCe
Confidence            999998764322211222335689999999999  8999999999999999999997622 1  112     34588899


Q ss_pred             EEEEeccC-CCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342        223 LSLAFPQN-DVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE  301 (401)
Q Consensus       223 ~~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  301 (401)
                      .+++++|. +++.|++|+.|+.|++||++.  ..++..+.+|...|++++|+|+      +.+|++++.|++|++||++.
T Consensus       200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~--~~~~~~~~~h~~~v~~v~~~p~------~~~l~s~s~D~~v~lwd~~~  271 (354)
T 2pbi_B          200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRS--GQCVQAFETHESDVNSVRYYPS------GDAFASGSDDATCRLYDLRA  271 (354)
T ss_dssp             EEEEECCCSSCCEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTT
T ss_pred             EEEEEEeCCCCCEEEEEeCCCeEEEEECCC--CcEEEEecCCCCCeEEEEEeCC------CCEEEEEeCCCeEEEEECCC
Confidence            99999843 468999999999999999984  4467889999999999999998      79999999999999999998


Q ss_pred             CCceEEEeec--CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC
Q psy17342        302 NKPVHSFNEF--RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK  379 (401)
Q Consensus       302 ~~~~~~~~~~--~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  379 (401)
                      ++.+..+..+  ...+.+++|+|++. ++++++.|+.|++||+.+++.+..   ..+|...|++++|+|+|++|++|+.|
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~---l~~h~~~v~~l~~spdg~~l~sgs~D  347 (354)
T 2pbi_B          272 DREVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGSRVSI---LFGHENRVSTLRVSPDGTAFCSGSWD  347 (354)
T ss_dssp             TEEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEE---ECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             CcEEEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCCceEEE---EECCCCcEEEEEECCCCCEEEEEcCC
Confidence            8777766543  34789999999997 899999999999999988765433   34788999999999999999999999


Q ss_pred             CcEEEEE
Q psy17342        380 GAITMFD  386 (401)
Q Consensus       380 g~v~iw~  386 (401)
                      |.|++|+
T Consensus       348 ~~v~vW~  354 (354)
T 2pbi_B          348 HTLRVWA  354 (354)
T ss_dssp             SEEEEEC
T ss_pred             CCEEecC
Confidence            9999995

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.1e-46  Score=354.92  Aligned_cols=328  Identities=17%  Similarity=0.232  Sum_probs=254.3

Q ss_pred             cccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEeccC
Q psy17342          9 SQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRN   88 (401)
Q Consensus         9 ~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~   88 (401)
                      .+++|+.|+++++||....+                        ....+    ..|...|.+++|+|++++|++++    
T Consensus       162 ~l~s~s~D~~v~lwd~~~~~------------------------~~~~l----~~H~~~V~~v~fspdg~~las~s----  209 (611)
T 1nr0_A          162 RIISGSDDNTVAIFEGPPFK------------------------FKSTF----GEHTKFVHSVRYNPDGSLFASTG----  209 (611)
T ss_dssp             EEEEEETTSCEEEEETTTBE------------------------EEEEE----CCCSSCEEEEEECTTSSEEEEEE----
T ss_pred             EEEEEeCCCeEEEEECCCCe------------------------Eeeee----ccccCceEEEEECCCCCEEEEEE----
Confidence            59999999999999853221                        00111    14778999999999999999999    


Q ss_pred             CCCCCCCCcEEEEEeCcCCCCCceEEE------ecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceee----
Q psy17342         89 KEAPNEPDGVCLIWNTKFKKTTPEFEF------FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHR----  158 (401)
Q Consensus        89 ~~~~~~~d~~v~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~----  158 (401)
                            .|++|++||+.+++....+..      .|.+.|.+++|+|++ .+|++|+.|++|++||+.+++......    
T Consensus       210 ------~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~  282 (611)
T 1nr0_A          210 ------GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTR  282 (611)
T ss_dssp             ------TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             ------CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCC
Confidence                  899999999987765443322      578999999999987 789999999999999998764322111    


Q ss_pred             ---------------------------------ccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCc
Q psy17342        159 ---------------------------------TPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQ  205 (401)
Q Consensus       159 ---------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~  205 (401)
                                                       ....+.+|...|.+++|  +|++.+|++++.|++|++||+.......
T Consensus       283 ~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~--spdg~~l~s~s~D~~v~~Wd~~~~~~~~  360 (611)
T 1nr0_A          283 IEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSS--SADGKTLFSADAEGHINSWDISTGISNR  360 (611)
T ss_dssp             GGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             ccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEE--eCCCCEEEEEeCCCcEEEEECCCCceee
Confidence                                             00123589999999999  9999999999999999999987522100


Q ss_pred             cc--------c-------------------------------------ccc---------cc------------------
Q psy17342        206 ET--------R-------------------------------------DLQ---------YN------------------  213 (401)
Q Consensus       206 ~~--------~-------------------------------------~~~---------~~------------------  213 (401)
                      ..        .                                     .+.         ..                  
T Consensus       361 ~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~  440 (611)
T 1nr0_A          361 VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG  440 (611)
T ss_dssp             CSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT
T ss_pred             ecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCC
Confidence            00        0                                     000         00                  


Q ss_pred             --cccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC
Q psy17342        214 --NKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD  291 (401)
Q Consensus       214 --~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d  291 (401)
                        ....+...+.+++|+ |++++|++|+.|+.|++|++.......... .+|...|++++|+|+      +++|++++.|
T Consensus       441 ~~~~~~~~~~v~~va~s-pdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspd------g~~las~s~d  512 (611)
T 1nr0_A          441 KLTEVPISYNSSCVALS-NDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNN------GAFLVATDQS  512 (611)
T ss_dssp             EEEEEECSSCEEEEEEC-TTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTT------SSEEEEEETT
T ss_pred             ceeeeecCCCceEEEEe-CCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCC------CCEEEEEcCC
Confidence              000123457899999 899999999999999999987543222333 679999999999999      7999999999


Q ss_pred             CeEEEEEeeC-CCceEE--EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecC-CCCeEEEEec
Q psy17342        292 WSVKLWNIKE-NKPVHS--FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG-APALSRVTWT  367 (401)
Q Consensus       292 ~~i~iwd~~~-~~~~~~--~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~s  367 (401)
                      ++|++||+.+ ++.+..  +..|...|.+++|+|+++ +|++++.|++|++||+.++.... .....+| ...|++++|+
T Consensus       513 ~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~-~lasgs~D~~v~lW~~~~~~~~~-~~~~~~h~~~~v~~v~fs  590 (611)
T 1nr0_A          513 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNKPSDHP-IIIKGAHAMSSVNSVIWL  590 (611)
T ss_dssp             SCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCTTSCC-EEETTSSTTSCEEEEEEE
T ss_pred             CCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCC-EEEEEECCCcEEEEECCCccccc-chhhccCcccCeeEEEEc
Confidence            9999999987 555443  344999999999999997 89999999999999998765332 1223456 6889999999


Q ss_pred             CCCcEEEEEecCCcEEEEEec
Q psy17342        368 PNGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       368 ~~g~~l~~~~~dg~v~iw~~~  388 (401)
                      |+++ |++++.|++|++|++.
T Consensus       591 ~d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          591 NETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             ETTE-EEEEETTSCEEEEECC
T ss_pred             CCCE-EEEecCCCCEEEEecc
Confidence            9998 9999999999999973

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.1e-46  Score=334.67  Aligned_cols=303  Identities=18%  Similarity=0.252  Sum_probs=248.0

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      +|.+.|++++|+|++++|++++          .|++|+|||+.+++....+ ..|...|.+++|+|++ .+|++|+.|+.
T Consensus        64 gH~~~V~~~~~sp~~~~l~s~s----------~D~~v~iWd~~~~~~~~~~-~~h~~~v~~~~~s~~g-~~las~~~d~~  131 (380)
T 3iz6_a           64 GHSGKVYSLDWTPEKNWIVSAS----------QDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAPNG-QSVACGGLDSA  131 (380)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEE----------TTSEEEEEETTTTEEEEEE-ECCCTTCCCCEECTTS-SEEEECCSSSC
T ss_pred             ccccEEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCccceEE-ecCCCCEEEEEECCCC-CEEEEeeCCCc
Confidence            5889999999999999999999          8999999999877655444 3468899999999987 79999999999


Q ss_pred             EEEEECCCCCCCc-eeeccccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        143 IVLWDTRVQKKTP-VHRTPLSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       143 v~iw~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      +++|++....... .......+.+|.+.|.++.|  .|+ +..|++++.|++|++||++... ....+....  ..+|..
T Consensus       132 v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~--~~~~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~~~--~~~h~~  206 (380)
T 3iz6_a          132 CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQY--VPDQETRLITGSGDQTCVLWDVTTGQ-RISIFGSEF--PSGHTA  206 (380)
T ss_dssp             CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBC--CSSSSSCEEEECTTSCEEEECTTTCC-EEEEECCCS--SSSCCS
T ss_pred             EEEEECCCCccccCCccceeeccCCCcceEEEEE--ecCCCCEEEEECCCCcEEEEEcCCCc-EEEEeeccc--CCCCcc
Confidence            9999997643211 00111235789999999998  665 4579999999999999998632 222111111  245888


Q ss_pred             ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEee
Q psy17342        221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIK  300 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  300 (401)
                      .|.+++|+|.+++++++|+.|+.|++||++... ..+..+.+|.+.|++++|+|+      +.+|++|+.|++|++||++
T Consensus       207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-~~~~~~~~h~~~v~~v~~~p~------~~~l~s~s~D~~i~lwd~~  279 (380)
T 3iz6_a          207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITS-RAVRTYHGHEGDINSVKFFPD------GQRFGTGSDDGTCRLFDMR  279 (380)
T ss_dssp             CEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-CCCEEECCCSSCCCEEEECTT------SSEEEEECSSSCEEEEETT
T ss_pred             CeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-cceEEECCcCCCeEEEEEecC------CCeEEEEcCCCeEEEEECC
Confidence            999999997789999999999999999997432 357788999999999999998      7999999999999999999


Q ss_pred             CCCceEEEeecC-------CceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEE-eecCCCCeEEEEecCCCcE
Q psy17342        301 ENKPVHSFNEFR-------DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSA-IVEGAPALSRVTWTPNGTQ  372 (401)
Q Consensus       301 ~~~~~~~~~~~~-------~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~  372 (401)
                      +++++..+..+.       ..|.+++|+|+++ ++++|+.||.|++||+..++....+.. ...|...|++++|+|+|++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~  358 (380)
T 3iz6_a          280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSA  358 (380)
T ss_dssp             TTEEEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSE
T ss_pred             CCcEEEEecccccccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCE
Confidence            998888776543       2489999999997 899999999999999987765433311 1357889999999999999


Q ss_pred             EEEEecCCcEEEEEeccC
Q psy17342        373 LCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       373 l~~~~~dg~v~iw~~~~~  390 (401)
                      |++|+.||.|++|++...
T Consensus       359 l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          359 LCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             EEEECTTSCEEEEECCSS
T ss_pred             EEEeeCCCCEEEEecCCC
Confidence            999999999999999875

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-45  Score=319.82  Aligned_cols=301  Identities=15%  Similarity=0.192  Sum_probs=227.2

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE--e-cCCCeeEEEEeCCCCceEEEEec
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF--F-CQSPVLSCCFAKFNPYLILGGTY  139 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~l~~g~~  139 (401)
                      .|.++|.+++|+|+  +|++++          .|++|++||+.++.......+  . |...|.+++|+|++ .+|++|+.
T Consensus        12 ~h~~~v~~~~~s~~--~las~~----------~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~   78 (330)
T 2hes_X           12 LYKEKIWSFDFSQG--ILATGS----------TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSF   78 (330)
T ss_dssp             CCSSCEEEEEEETT--EEEEEE----------SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS-SEEEEEET
T ss_pred             cCCCceeeeccCCC--EEEEEc----------CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC-CEEEEEeC
Confidence            57799999999998  888888          799999999986533222222  3 78899999999977 79999999


Q ss_pred             CCeEEEEECCCCCCC-ceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342        140 SGQIVLWDTRVQKKT-PVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       140 dg~v~iw~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      |+.|++|++...... ........+.+|...|.+++|  +|++.+|++++.|++|++||++.........  ..  +.+|
T Consensus        79 D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--sp~g~~las~s~D~~v~iwd~~~~~~~~~~~--~~--~~~h  152 (330)
T 2hes_X           79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW--SNDGYYLATCSRDKSVWIWETDESGEEYECI--SV--LQEH  152 (330)
T ss_dssp             TSCEEEEEC-------CCCEEEEEEC----CEEEEEE--CTTSCEEEEEETTSCEEEEECCTTCCCCEEE--EE--ECCC
T ss_pred             CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEE--CCCCCEEEEEeCCCEEEEEeccCCCCCeEEE--EE--eccC
Confidence            999999999643211 000111235789999999999  9999999999999999999995422211111  11  3458


Q ss_pred             ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      ...|.+++|+ |++.+|++|+.|+.|++|+.......++..+.+|.+.|.+++|+|+..    +.+|++++.|++|++||
T Consensus       153 ~~~v~~v~~~-p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----~~~l~s~s~D~~v~iw~  227 (330)
T 2hes_X          153 SQDVKHVIWH-PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG----VFRLCSGSDDSTVRVWK  227 (330)
T ss_dssp             SSCEEEEEEC-SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS----SCEEEEEETTSCEEEEE
T ss_pred             CCceEEEEEC-CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC----eeEEEEEeCCCeEEEEE
Confidence            8899999999 789999999999999999987543346778899999999999999731    36899999999999999


Q ss_pred             eeCC--------CceEEEee-cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCC-CeEEEEecC
Q psy17342        299 IKEN--------KPVHSFNE-FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAP-ALSRVTWTP  368 (401)
Q Consensus       299 ~~~~--------~~~~~~~~-~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~s~  368 (401)
                      ++.+        .+...+.. |...|.+++|++++  +|++++.||.|++||..++...........|.. .|.+++|+|
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~  305 (330)
T 2hes_X          228 YMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLE  305 (330)
T ss_dssp             EEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-
T ss_pred             ecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEec
Confidence            9765        23344444 88999999999775  689999999999999876532112222234555 899999999


Q ss_pred             --CCcEEEEEecCCcEEEEEecc
Q psy17342        369 --NGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       369 --~g~~l~~~~~dg~v~iw~~~~  389 (401)
                        ++++|++|+.||.|++|++++
T Consensus       306 ~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          306 LNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             ----CCEEEEETTSEEEEEEC--
T ss_pred             CCCceEEEEecCCCcEEEEEecc
Confidence              789999999999999999875

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.9e-44  Score=313.96  Aligned_cols=290  Identities=17%  Similarity=0.258  Sum_probs=235.0

Q ss_pred             ccccceEEEEe-----cC-CCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC-----c-eEEEecCCCeeEEEEeCCC
Q psy17342         63 SKNRNVTYMDW-----ST-QHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT-----P-EFEFFCQSPVLSCCFAKFN  130 (401)
Q Consensus        63 ~~~~~v~~~~~-----~~-~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~-----~-~~~~~~~~~v~~~~~~~~~  130 (401)
                      +|.+.|++++|     +| ++++|++++          .|++|++||+.+.+..     + .....|...|.+++|+|++
T Consensus        19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs----------~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~   88 (343)
T 2xzm_R           19 GHSDWVTSIVAGFSQKENEDSPVLISGS----------RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN   88 (343)
T ss_dssp             CCSSCEEEEEECCCSSTTCCCCEEEEEE----------TTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST
T ss_pred             cchhhhhheeeEEEeecCCCCCEEEEEc----------CCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC
Confidence            58899999999     76 899999999          7999999999754321     1 1223578899999999977


Q ss_pred             CceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccc
Q psy17342        131 PYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDL  210 (401)
Q Consensus       131 ~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~  210 (401)
                       .++++|+.|++|++||+++++..      ..+.+|...|.+++|  +|++.+|++++.|++|++||+..  ...  ...
T Consensus        89 -~~l~s~s~D~~v~lwd~~~~~~~------~~~~~h~~~v~~v~~--sp~~~~l~s~~~d~~i~~wd~~~--~~~--~~~  155 (343)
T 2xzm_R           89 -CFAISSSWDKTLRLWDLRTGTTY------KRFVGHQSEVYSVAF--SPDNRQILSAGAEREIKLWNILG--ECK--FSS  155 (343)
T ss_dssp             -TEEEEEETTSEEEEEETTSSCEE------EEEECCCSCEEEEEE--CSSTTEEEEEETTSCEEEEESSS--CEE--EEC
T ss_pred             -CEEEEEcCCCcEEEEECCCCcEE------EEEcCCCCcEEEEEE--CCCCCEEEEEcCCCEEEEEeccC--Cce--eee
Confidence             78999999999999999887643      235789999999999  99999999999999999999863  111  111


Q ss_pred             ccccccCCccceEEEEeccCCC----------CeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCC
Q psy17342        211 QYNNKQTKNLAVLSLAFPQNDV----------NNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHID  280 (401)
Q Consensus       211 ~~~~~~~~~~~v~~~~~~~~~~----------~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~  280 (401)
                      ..  ...|...|.+++|+ +++          .++++++.|+.|++||..   ......+.+|...|.+++|+|+     
T Consensus       156 ~~--~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~h~~~v~~~~~s~~-----  224 (343)
T 2xzm_R          156 AE--KENHSDWVSCVRYS-PIMKSANKVQPFAPYFASVGWDGRLKVWNTN---FQIRYTFKAHESNVNHLSISPN-----  224 (343)
T ss_dssp             CT--TTSCSSCEEEEEEC-CCCCSCSCCCSSCCEEEEEETTSEEEEEETT---TEEEEEEECCSSCEEEEEECTT-----
T ss_pred             ec--ccCCCceeeeeeec-cccccccccCCCCCEEEEEcCCCEEEEEcCC---CceeEEEcCccccceEEEECCC-----
Confidence            11  23478899999999 554          689999999999999953   2356678899999999999998     


Q ss_pred             CCcEEEEEeCCCeEEEEEeeC-CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe-----
Q psy17342        281 FSHLYLTSSYDWSVKLWNIKE-NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAI-----  354 (401)
Q Consensus       281 ~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----  354 (401)
                       +++|++|+.|+.|++||+.. ..+...+. +...|.+++|+|++. +++ ++.|+.|++||+.+.+........     
T Consensus       225 -g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~-~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~  300 (343)
T 2xzm_R          225 -GKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQ-WVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPIT  300 (343)
T ss_dssp             -SSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSC-EEE-EEESSCEEEEESSSCCSCSEEECCCCSGG
T ss_pred             -CCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCC-EEE-EECCCCEEEEEeCCCCCCceEEeecCcch
Confidence             79999999999999999954 44444443 466799999999986 565 456888999999887665422221     


Q ss_pred             -----ecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        355 -----VEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       355 -----~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                           .+|...|++++|+|+|++|++|+.||.|++|+++++
T Consensus       301 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          301 KAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             GBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             hhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence                 145678999999999999999999999999999876

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-46  Score=335.48  Aligned_cols=343  Identities=15%  Similarity=0.225  Sum_probs=265.4

Q ss_pred             chhhhhc-ccccc----------ccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEE
Q psy17342          2 DWAEAGE-SQISG----------TLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTY   70 (401)
Q Consensus         2 ~~~~~~~-~~~~g----------~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   70 (401)
                      .|...+. .+++|          +.||.+++|+.........+                          ..+.|...|.+
T Consensus        19 ~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~--------------------------~~~~~~~~v~~   72 (416)
T 2pm9_A           19 AWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI--------------------------ASLQVDSKFND   72 (416)
T ss_dssp             CBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS--------------------------CCCCCSSCEEE
T ss_pred             eeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE--------------------------EEEecCCceEE
Confidence            4555554 78888          88999999998765411000                          11235578999


Q ss_pred             EEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCC---CCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEE
Q psy17342         71 MDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK---KTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWD  147 (401)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~  147 (401)
                      ++|+|++++|++++          .|+.|++||+.+.   .........|...|.+++|+|++..+|++|+.||.|++||
T Consensus        73 ~~~s~~~~~l~~~~----------~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd  142 (416)
T 2pm9_A           73 LDWSHNNKIIAGAL----------DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD  142 (416)
T ss_dssp             EEECSSSSCEEEEE----------SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred             EEECCCCCeEEEEc----------cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence            99999999999999          7999999999862   2122223347889999999998568999999999999999


Q ss_pred             CCCCCCCc---eeeccccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceE
Q psy17342        148 TRVQKKTP---VHRTPLSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL  223 (401)
Q Consensus       148 ~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (401)
                      +.+.....   ..........|...|.+++|  +++ +.+|++++.||.|++||++... ....+.... ...+|...|.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~-~~~~~~~~v~  218 (416)
T 2pm9_A          143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAW--NQSLAHVFASAGSSNFASIWDLKAKK-EVIHLSYTS-PNSGIKQQLS  218 (416)
T ss_dssp             TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE--CSSCTTEEEEESSSSCEEEEETTTTE-EEEEECCCC-CSSCCCCCEE
T ss_pred             CCCCccccccccccccccccCCCCCeeEEEe--CCCCCcEEEEEcCCCCEEEEECCCCC-cceEEeccc-cccccCCceE
Confidence            98876211   00011123679999999999  888 7899999999999999998622 211111110 0112378899


Q ss_pred             EEEeccCCCCeEEEEcCCc---eEEEEeCCCCCCCceeeec-CCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        224 SLAFPQNDVNNFVVGCEDG---NVYSACRHGNKAGNVECYE-GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       224 ~~~~~~~~~~~l~~~~~d~---~i~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      +++|+|....++++++.++   .|++||++... .++..+. +|...|.+++|+|..     +.+|++++.|+.|++||+
T Consensus       219 ~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-~~~~~~~~~~~~~v~~~~~s~~~-----~~~l~s~~~dg~v~~wd~  292 (416)
T 2pm9_A          219 VVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-TPLQTLNQGHQKGILSLDWCHQD-----EHLLLSSGRDNTVLLWNP  292 (416)
T ss_dssp             EEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-SCSBCCCSCCSSCEEEEEECSSC-----SSCEEEEESSSEEEEECS
T ss_pred             EEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-CCcEEeecCccCceeEEEeCCCC-----CCeEEEEeCCCCEEEeeC
Confidence            9999943347899999998   99999998532 3566777 899999999999932     799999999999999999


Q ss_pred             eCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEE--------------------------
Q psy17342        300 KENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSA--------------------------  353 (401)
Q Consensus       300 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------------------------  353 (401)
                      ++++++..+..|...|.+++|+|+++.+|++++.|+.|++||+.+.........                          
T Consensus       293 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (416)
T 2pm9_A          293 ESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPS  372 (416)
T ss_dssp             SSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCC
T ss_pred             CCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccc
Confidence            999999999999999999999999955899999999999999987664432210                          


Q ss_pred             ------eecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        354 ------IVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       354 ------~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                            ...+..++.+++|+|+|++|++++.||.|+||++.+.
T Consensus       373 ~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          373 VFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             SSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             cccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence                  0014567789999999999999999999999999875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.7e-44  Score=312.72  Aligned_cols=289  Identities=19%  Similarity=0.252  Sum_probs=237.0

Q ss_pred             ccccceEEEEecCCC-CCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC---c-eEEEecCCCeeEEEEeCCCCceEEEE
Q psy17342         63 SKNRNVTYMDWSTQH-PELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT---P-EFEFFCQSPVLSCCFAKFNPYLILGG  137 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~---~-~~~~~~~~~v~~~~~~~~~~~~l~~g  137 (401)
                      +|.+.|.+++|+|++ ++|++++          .|++|++|++......   + .....|...|.+++|+|++ .+|++|
T Consensus        15 gH~~~V~~l~~~~~~~~~l~s~s----------~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~   83 (319)
T 3frx_A           15 GHNGWVTSLATSAGQPNLLLSAS----------RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG-AYALSA   83 (319)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEE----------TTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-SEEEEE
T ss_pred             cccceEEEEEccCCCccEEEEec----------CCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-CEEEEE
Confidence            588999999999976 6788888          8999999998753221   1 1223578999999999977 799999


Q ss_pred             ecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccC
Q psy17342        138 TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT  217 (401)
Q Consensus       138 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  217 (401)
                      +.|++|++||+.+++..      ..+.+|...|.+++|  ++++.+|++++.|++|++||++.  .  ....     ..+
T Consensus        84 s~D~~v~~wd~~~~~~~------~~~~~h~~~v~~~~~--~~~~~~l~s~s~D~~i~vwd~~~--~--~~~~-----~~~  146 (319)
T 3frx_A           84 SWDKTLRLWDVATGETY------QRFVGHKSDVMSVDI--DKKASMIISGSRDKTIKVWTIKG--Q--CLAT-----LLG  146 (319)
T ss_dssp             ETTSEEEEEETTTTEEE------EEEECCSSCEEEEEE--CTTSCEEEEEETTSCEEEEETTS--C--EEEE-----ECC
T ss_pred             eCCCEEEEEECCCCCee------EEEccCCCcEEEEEE--cCCCCEEEEEeCCCeEEEEECCC--C--eEEE-----Eec
Confidence            99999999999887643      235789999999999  99999999999999999999863  1  1111     345


Q ss_pred             CccceEEEEeccC-----CCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC
Q psy17342        218 KNLAVLSLAFPQN-----DVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW  292 (401)
Q Consensus       218 ~~~~v~~~~~~~~-----~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~  292 (401)
                      |...|.++.+.|.     ++..+++++.|+.|++||++.  ......+.+|..+|.+++|+|+      +.+|++++.|+
T Consensus       147 h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~~h~~~v~~~~~sp~------g~~l~s~~~dg  218 (319)
T 3frx_A          147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ--FQIEADFIGHNSNINTLTASPD------GTLIASAGKDG  218 (319)
T ss_dssp             CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT--TEEEEEECCCCSCEEEEEECTT------SSEEEEEETTC
T ss_pred             cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc--chhheeecCCCCcEEEEEEcCC------CCEEEEEeCCC
Confidence            8889999999942     345899999999999999974  3456778899999999999998      79999999999


Q ss_pred             eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe-----ecCCCCeEEEEec
Q psy17342        293 SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAI-----VEGAPALSRVTWT  367 (401)
Q Consensus       293 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~~~s  367 (401)
                      .|++||+++++++..+.. ...|.+++|+|++. ++++++ ++.+++|++........+...     ..+...+.+++|+
T Consensus       219 ~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~-~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  295 (319)
T 3frx_A          219 EIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRY-WLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS  295 (319)
T ss_dssp             EEEEEETTTTEEEEEEEC-CSCEEEEEECSSSS-EEEEEE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEEC
T ss_pred             eEEEEECCCCcEEEEecC-CCcEEEEEEcCCCC-EEEEEc-CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEEC
Confidence            999999999999988886 46899999999997 677665 556999999865433222111     1235678999999


Q ss_pred             CCCcEEEEEecCCcEEEEEeccC
Q psy17342        368 PNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       368 ~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      |||++|++|+.||.|++||+.++
T Consensus       296 pdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          296 ADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             TTSSEEEEEETTSCEEEEEEEEC
T ss_pred             CCCCEEEEeecCceEEEEEEeec
Confidence            99999999999999999999875

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.5e-44  Score=320.99  Aligned_cols=287  Identities=16%  Similarity=0.214  Sum_probs=236.2

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-----------------cCCCeeEEE
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-----------------CQSPVLSCC  125 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-----------------~~~~v~~~~  125 (401)
                      .|...|.+++|+|+|++|++++           ++.+++|++.+++....+..+                 +...|.+++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-----------~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  130 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-----------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC  130 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-----------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-----------CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEE
Confidence            5889999999999999888876           789999999877654333211                 112489999


Q ss_pred             EeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCc
Q psy17342        126 FAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQ  205 (401)
Q Consensus       126 ~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~  205 (401)
                      |+|++ .+|++|+.|+.|++||+.+++..      ..+.+|...|.+++|  +|++.+|++++.|++|++||++... . 
T Consensus       131 ~s~dg-~~l~s~~~d~~i~iwd~~~~~~~------~~~~~h~~~v~~~~~--~p~~~~l~s~s~d~~v~iwd~~~~~-~-  199 (393)
T 1erj_A          131 FSPDG-KFLATGAEDRLIRIWDIENRKIV------MILQGHEQDIYSLDY--FPSGDKLVSGSGDRTVRIWDLRTGQ-C-  199 (393)
T ss_dssp             ECTTS-SEEEEEETTSCEEEEETTTTEEE------EEECCCSSCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTE-E-
T ss_pred             ECCCC-CEEEEEcCCCeEEEEECCCCcEE------EEEccCCCCEEEEEE--cCCCCEEEEecCCCcEEEEECCCCe-e-
Confidence            99987 78999999999999999876543      235789999999999  8999999999999999999997522 1 


Q ss_pred             cccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeee-------cCCCCceeeeecCccCCC
Q psy17342        206 ETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY-------EGHEGPVVGLSSHRAQGH  278 (401)
Q Consensus       206 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-------~~~~~~v~~i~~~~~~~~  278 (401)
                       ...+      .+...+.+++|+|.++.++++|+.|+.|++||.+...  .+..+       .+|...|.+++|+|+   
T Consensus       200 -~~~~------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~~h~~~v~~v~~~~~---  267 (393)
T 1erj_A          200 -SLTL------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF--LVERLDSENESGTGHKDSVYSVVFTRD---  267 (393)
T ss_dssp             -EEEE------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC--EEEEEC------CCCSSCEEEEEECTT---
T ss_pred             -EEEE------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc--EEEeecccccCCCCCCCCEEEEEECCC---
Confidence             1111      1445799999996699999999999999999987432  34444       579999999999998   


Q ss_pred             CCCCcEEEEEeCCCeEEEEEeeCC------------CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342        279 IDFSHLYLTSSYDWSVKLWNIKEN------------KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT  346 (401)
Q Consensus       279 ~~~~~~l~s~~~d~~i~iwd~~~~------------~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~  346 (401)
                         +.+|++++.|+.|++||+++.            .+...+.+|...|.+++|+|++. +|++++.|+.|++||+.+++
T Consensus       268 ---g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~~~~~  343 (393)
T 1erj_A          268 ---GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGN  343 (393)
T ss_dssp             ---SSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTCC
T ss_pred             ---CCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC-EEEEEeCCCeEEEEECCCCe
Confidence               799999999999999999753            34567788999999999999997 89999999999999999887


Q ss_pred             CCcceEEeecCCCCeEEEEecC------CCcEEEEEecCCcEEEEEeccC
Q psy17342        347 EVPATSAIVEGAPALSRVTWTP------NGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       347 ~~~~~~~~~~~~~~v~~~~~s~------~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      .+..+   .+|...|.+++|++      ++++|++|+.||.|++|++...
T Consensus       344 ~~~~l---~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          344 PLLML---QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EEEEE---ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             EEEEE---CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            54443   47888999999886      6899999999999999999764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.6e-44  Score=336.54  Aligned_cols=308  Identities=19%  Similarity=0.285  Sum_probs=256.5

Q ss_pred             hhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEE
Q psy17342          3 WAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL   82 (401)
Q Consensus         3 ~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   82 (401)
                      |..-+..+++++.|+.+++|+.....        .                 ..    ...|...|.+++|+|+++.|++
T Consensus       270 ~~~d~~~l~~~~~d~~i~~w~~~~~~--------~-----------------~~----~~~h~~~v~~~~~~~~~~~l~t  320 (577)
T 2ymu_A          270 FRPDGQTIASASDDKTVKLWNRNGQL--------L-----------------QT----LTGHSSSVWGVAFSPDGQTIAS  320 (577)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTSCE--------E-----------------EE----ECCCSSCEEEEEECTTSSEEEE
T ss_pred             EcCCCCEEEEEeCCCEEEEEeCCCcE--------E-----------------EE----EecCCCCeEEEEECCCCCEEEE
Confidence            33456789999999999999853221        0                 00    1146688999999999999999


Q ss_pred             EEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecccc
Q psy17342         83 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLS  162 (401)
Q Consensus        83 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~  162 (401)
                      ++          .|+.|++||..... .. ....|...|.+++|+|++ .+|++|+.||.|++|+..... .      ..
T Consensus       321 ~~----------~d~~i~~w~~~~~~-~~-~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~~~~-~------~~  380 (577)
T 2ymu_A          321 AS----------DDKTVKLWNRNGQH-LQ-TLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQL-L------QT  380 (577)
T ss_dssp             EE----------TTSCEEEEETTSCE-EE-EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTCCE-E------EE
T ss_pred             Ee----------CCCeEEEEeCCCCe-eE-EEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcCCCCE-E------EE
Confidence            99          79999999987432 22 234578899999999987 789999999999999964322 1      23


Q ss_pred             ccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCc
Q psy17342        163 VMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG  242 (401)
Q Consensus       163 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  242 (401)
                      +..|...|.+++|  +|++.+|++++.|+.|++||...  +.  ...     ..+|...|++++|+ |++++|++++.|+
T Consensus       381 ~~~~~~~v~~~~~--s~dg~~l~~~~~d~~v~~~~~~~--~~--~~~-----~~~~~~~v~~~~~s-~d~~~l~~~~~d~  448 (577)
T 2ymu_A          381 LTGHSSSVRGVAF--SPDGQTIASASDDKTVKLWNRNG--QL--LQT-----LTGHSSSVWGVAFS-PDDQTIASASDDK  448 (577)
T ss_dssp             EECCSSCEEEEEE--CTTSSCEEEEETTSEEEEECTTC--CE--EEE-----EECCSSCEEEEEEC-TTSSEEEEEETTS
T ss_pred             ecCCCCCeEEEEE--CCCCCEEEEEeCCCEEEEEeCCC--CE--EEE-----ecCCCCCeEEEEEC-CCCCEEEEEcCCC
Confidence            4689999999999  99999999999999999999642  11  112     34488899999999 8999999999999


Q ss_pred             eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECC
Q psy17342        243 NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP  322 (401)
Q Consensus       243 ~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  322 (401)
                      .|++|+...   +.+..+.+|..+|.+++|+|+      +++|++++.|+.|++||. +++++..+.+|...|++++|+|
T Consensus       449 ~v~~w~~~~---~~~~~~~~~~~~v~~~~~spd------~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~  518 (577)
T 2ymu_A          449 TVKLWNRNG---QLLQTLTGHSSSVRGVAFSPD------GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP  518 (577)
T ss_dssp             EEEEEETTS---CEEEEEECCSSCEEEEEECTT------SCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT
T ss_pred             EEEEEECCC---CEEEEEcCCCCCEEEEEEcCC------CCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcC
Confidence            999999753   367788899999999999998      799999999999999995 6888999999999999999999


Q ss_pred             CCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEE
Q psy17342        323 INPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFD  386 (401)
Q Consensus       323 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~  386 (401)
                      +++ +|++++.|+.|++||.. ++.+..   ..+|...|++++|+|||++|++++.|++|++||
T Consensus       519 dg~-~l~s~~~dg~v~lwd~~-~~~~~~---~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          519 DGQ-TIASASDDKTVKLWNRN-GQLLQT---LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             TSS-CEEEEETTSEEEEECTT-SCEEEE---EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCC-EEEEEECcCEEEEEeCC-CCEEEE---EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            997 78999999999999964 443333   357889999999999999999999999999997

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.4e-44  Score=315.50  Aligned_cols=249  Identities=22%  Similarity=0.279  Sum_probs=207.1

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE---EecCCCeeEEEEeCCCCceEEEEecC
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE---FFCQSPVLSCCFAKFNPYLILGGTYS  140 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~g~~d  140 (401)
                      +...|.+++|+|++ .|++++          .||+|+|||+++++......   .+|...|++++|+|++ ++|++|+.|
T Consensus        81 ~~~~v~~~~~s~d~-~l~~~s----------~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d  148 (344)
T 4gqb_B           81 TEAGVADLTWVGER-GILVAS----------DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKD  148 (344)
T ss_dssp             ESSCEEEEEEETTT-EEEEEE----------TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETT
T ss_pred             cCCCEEEEEEeCCC-eEEEEE----------CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCC
Confidence            44779999999986 688888          79999999999887665443   3588999999999987 799999999


Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCc-eEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNA-HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                      ++|++||+.+++..      ..+.+|.+.|.+++|  ++++ .+|++++.|++|++||++... +...+..     ..+.
T Consensus       149 ~~i~iwd~~~~~~~------~~~~~h~~~V~~~~~--~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~-----~~~~  214 (344)
T 4gqb_B          149 ICIKVWDLAQQVVL------SSYRAHAAQVTCVAA--SPHKDSVFLSCSEDNRILLWDTRCPK-PASQIGC-----SAPG  214 (344)
T ss_dssp             SCEEEEETTTTEEE------EEECCCSSCEEEEEE--CSSCTTEEEEEETTSCEEEEETTSSS-CEEECC---------C
T ss_pred             CeEEEEECCCCcEE------EEEcCcCCceEEEEe--cCCCCCceeeeccccccccccccccc-eeeeeec-----ceee
Confidence            99999999987643      335789999999999  7777 478999999999999998632 2222222     2255


Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      ..+.+++|+|.++.++++|+.|+.|++||++.  .+++..+.+|...|++++|+|+.     ..+|++|+.|++|+|||+
T Consensus       215 ~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~--~~~~~~~~~h~~~v~~v~fsp~g-----~~~lasgs~D~~i~vwd~  287 (344)
T 4gqb_B          215 YLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS--TSCVLSSAVHSQCVTGLVFSPHS-----VPFLASLSEDCSLAVLDS  287 (344)
T ss_dssp             CCEEEEEECSSCTTEEEEEETTSEEEEEESCC----CCEEEECCSSCEEEEEECSSS-----SCCEEEEETTSCEEEECT
T ss_pred             ccceeeeecCCCCcceEEeccCCcEEEEECCC--CcEEEEEcCCCCCEEEEEEccCC-----CeEEEEEeCCCeEEEEEC
Confidence            67899999966788899999999999999984  44688899999999999999984     468999999999999999


Q ss_pred             eCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342        300 KENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT  346 (401)
Q Consensus       300 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~  346 (401)
                      +++++ ..+.+|.+.|++++|+|+++.+|++++.|++|++|++.+..
T Consensus       288 ~~~~~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          288 SLSEL-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             TCCEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             CCCcE-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            88765 45788999999999999998789999999999999998643

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.2e-43  Score=334.19  Aligned_cols=297  Identities=13%  Similarity=0.164  Sum_probs=246.2

Q ss_pred             eeeccccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEE
Q psy17342         56 QFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLIL  135 (401)
Q Consensus        56 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  135 (401)
                      .+......+++.+.+++|+|+|+.|++++           ++.|++|++.+++.... ..+|...|++++|+|++ ++|+
T Consensus         9 ~~~~~~~~~~g~~~~~~~spdg~~l~~~~-----------~~~v~l~~~~~~~~~~~-~~~h~~~v~~~~~spdg-~~la   75 (611)
T 1nr0_A            9 LFPSLPRTARGTAVVLGNTPAGDKIQYCN-----------GTSVYTVPVGSLTDTEI-YTEHSHQTTVAKTSPSG-YYCA   75 (611)
T ss_dssp             EECCCCCCCTTCCCCCEECTTSSEEEEEE-----------TTEEEEEETTCSSCCEE-ECCCSSCEEEEEECTTS-SEEE
T ss_pred             EECCCCCcccCceeEEeeCCCCCEEEeCC-----------CCEEEEecCCCcccCeE-ecCCCCceEEEEECCCC-cEEE
Confidence            33333335568899999999999999988           67999999986655433 34688999999999987 8999


Q ss_pred             EEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC----CcEEEeeccCCCCCccccccc
Q psy17342        136 GGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND----GRLCSWSLEMLSSPQETRDLQ  211 (401)
Q Consensus       136 ~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~~~~~~~  211 (401)
                      +|+.||+|+|||+.+++....    ..+..|.++|.+++|  +|++..|++++.+    +.|++||...   ...  .  
T Consensus        76 sg~~d~~v~lWd~~~~~~~~~----~~~~~~~~~v~~v~f--s~dg~~l~~~~~~~~~~~~v~~wd~~~---~~~--~--  142 (611)
T 1nr0_A           76 SGDVHGNVRIWDTTQTTHILK----TTIPVFSGPVKDISW--DSESKRIAAVGEGRERFGHVFLFDTGT---SNG--N--  142 (611)
T ss_dssp             EEETTSEEEEEESSSTTCCEE----EEEECSSSCEEEEEE--CTTSCEEEEEECCSSCSEEEEETTTCC---BCB--C--
T ss_pred             EEeCCCCEEEeECCCCcceee----EeecccCCceEEEEE--CCCCCEEEEEECCCCceeEEEEeeCCC---Ccc--e--
Confidence            999999999999976543221    234689999999999  9999999998875    4788888532   111  1  


Q ss_pred             cccccCCccceEEEEeccCCCC-eEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC
Q psy17342        212 YNNKQTKNLAVLSLAFPQNDVN-NFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY  290 (401)
Q Consensus       212 ~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~  290 (401)
                         +.+|...|.+++|+ |++. .|++|+.|+.|++||...  .+....+.+|...|.+++|+|+      +++|++++.
T Consensus       143 ---l~gh~~~v~~v~f~-p~~~~~l~s~s~D~~v~lwd~~~--~~~~~~l~~H~~~V~~v~fspd------g~~las~s~  210 (611)
T 1nr0_A          143 ---LTGQARAMNSVDFK-PSRPFRIISGSDDNTVAIFEGPP--FKFKSTFGEHTKFVHSVRYNPD------GSLFASTGG  210 (611)
T ss_dssp             ---CCCCSSCEEEEEEC-SSSSCEEEEEETTSCEEEEETTT--BEEEEEECCCSSCEEEEEECTT------SSEEEEEET
T ss_pred             ---ecCCCCCceEEEEC-CCCCeEEEEEeCCCeEEEEECCC--CeEeeeeccccCceEEEEECCC------CCEEEEEEC
Confidence               34588999999999 5665 699999999999999763  3467788999999999999998      799999999


Q ss_pred             CCeEEEEEeeCCCceEEEe-------ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcce------------
Q psy17342        291 DWSVKLWNIKENKPVHSFN-------EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPAT------------  351 (401)
Q Consensus       291 d~~i~iwd~~~~~~~~~~~-------~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------  351 (401)
                      |++|++||+.+++++..+.       +|.+.|.+++|+|+++ +|++++.|++|++||+.+++....+            
T Consensus       211 D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~  289 (611)
T 1nr0_A          211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG  289 (611)
T ss_dssp             TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred             CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEE
Confidence            9999999999999888884       7999999999999997 8999999999999999876543222            


Q ss_pred             ----------------------------EEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        352 ----------------------------SAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       352 ----------------------------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                                                  ....+|...|++++|+|+|++|++++.|+.|++||+.+++
T Consensus       290 ~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~  357 (611)
T 1nr0_A          290 IIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI  357 (611)
T ss_dssp             EEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             EEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence                                        1223577889999999999999999999999999998874

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5.3e-43  Score=328.60  Aligned_cols=317  Identities=18%  Similarity=0.297  Sum_probs=261.5

Q ss_pred             hhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEE
Q psy17342          3 WAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL   82 (401)
Q Consensus         3 ~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   82 (401)
                      |..-+..+++|+.||.+++|+.....        .                 .    ....|...|.+++|+|+++.|++
T Consensus       229 ~s~dg~~l~~~~~d~~i~~w~~~~~~--------~-----------------~----~~~~~~~~v~~v~~~~d~~~l~~  279 (577)
T 2ymu_A          229 FSPDGQTIASASDDKTVKLWNRNGQL--------L-----------------Q----TLTGHSSSVNGVAFRPDGQTIAS  279 (577)
T ss_dssp             ECTTSSCEEEEETTSCEEEECTTSCE--------E-----------------E----EECCCSSCEEEEEECTTSSEEEE
T ss_pred             ECCCCCEEEEEeCCCEEEEEeCCCCE--------E-----------------E----EEecCCCCEEEEEEcCCCCEEEE
Confidence            44567789999999999999853221        0                 0    01145688999999999999999


Q ss_pred             EEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecccc
Q psy17342         83 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLS  162 (401)
Q Consensus        83 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~  162 (401)
                      ++          .|+.|++|+.. ++.. .....|...|.+++|+|++ .++++++.|+.|++||......       ..
T Consensus       280 ~~----------~d~~i~~w~~~-~~~~-~~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i~~w~~~~~~~-------~~  339 (577)
T 2ymu_A          280 AS----------DDKTVKLWNRN-GQLL-QTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQHL-------QT  339 (577)
T ss_dssp             EE----------TTSCEEEEETT-SCEE-EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSCEE-------EE
T ss_pred             Ee----------CCCEEEEEeCC-CcEE-EEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCee-------EE
Confidence            99          79999999976 3332 2334578899999999977 7899999999999999865432       23


Q ss_pred             ccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCc
Q psy17342        163 VMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG  242 (401)
Q Consensus       163 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  242 (401)
                      +..|...|.+++|  +|++..+++++.|+.+++|+...  ..  ...     ...|...|.+++|+ +++++|++++.|+
T Consensus       340 ~~~~~~~v~~~~~--s~~g~~l~~~~~dg~v~~~~~~~--~~--~~~-----~~~~~~~v~~~~~s-~dg~~l~~~~~d~  407 (577)
T 2ymu_A          340 LTGHSSSVWGVAF--SPDGQTIASASDDKTVKLWNRNG--QL--LQT-----LTGHSSSVRGVAFS-PDGQTIASASDDK  407 (577)
T ss_dssp             ECCCSSCEEEEEE--CTTSSEEEEEETTSEEEEEETTC--CE--EEE-----EECCSSCEEEEEEC-TTSSCEEEEETTS
T ss_pred             EeCCCCCEEEEEE--CCCCCEEEEEeCCCEEEEEcCCC--CE--EEE-----ecCCCCCeEEEEEC-CCCCEEEEEeCCC
Confidence            4689999999999  99999999999999999999642  11  112     33478899999999 8999999999999


Q ss_pred             eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECC
Q psy17342        243 NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP  322 (401)
Q Consensus       243 ~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  322 (401)
                      .|++|+...   +.+..+.+|...|++++|+|+      +++|++++.|+.|++||. +++.+..+.+|...|.+++|+|
T Consensus       408 ~v~~~~~~~---~~~~~~~~~~~~v~~~~~s~d------~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~sp  477 (577)
T 2ymu_A          408 TVKLWNRNG---QLLQTLTGHSSSVWGVAFSPD------DQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP  477 (577)
T ss_dssp             EEEEECTTC---CEEEEEECCSSCEEEEEECTT------SSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT
T ss_pred             EEEEEeCCC---CEEEEecCCCCCeEEEEECCC------CCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcC
Confidence            999999643   467788899999999999998      799999999999999996 5778889999999999999999


Q ss_pred             CCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeee
Q psy17342        323 INPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFI  398 (401)
Q Consensus       323 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~  398 (401)
                      +++ +|++++.|+.|++||.. ++.+..   ..+|...|++++|+|+|++|++++.||.|++||.. +  ++++.+
T Consensus       478 d~~-~las~~~d~~i~iw~~~-~~~~~~---~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~--~~~~~~  545 (577)
T 2ymu_A          478 DGQ-TIASASDDKTVKLWNRN-GQLLQT---LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G--QLLQTL  545 (577)
T ss_dssp             TSC-EEEEEETTSEEEEEETT-SCEEEE---EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-S--CEEEEE
T ss_pred             CCC-EEEEEeCCCEEEEEcCC-CCEEEE---EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-C--CEEEEE
Confidence            997 89999999999999964 443333   34788899999999999999999999999999964 3  344444

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.1e-42  Score=306.67  Aligned_cols=300  Identities=16%  Similarity=0.302  Sum_probs=244.3

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCC---CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCC--CceEEEE
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEP---DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFN--PYLILGG  137 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~---d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~g  137 (401)
                      .|...|.+++|+|+++.+++++         +.   |+.|++||+.+++........|...|.+++|+|++  ..+|++|
T Consensus        16 ~h~~~v~~~~~~p~~~~l~~~~---------s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~   86 (357)
T 3i2n_A           16 GFNYTVFDCKWVPCSAKFVTMG---------NFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG   86 (357)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEE---------C--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred             CCCCceEEEEEcCCCceEEEec---------CccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence            4779999999999998777666         24   89999999998776666666789999999999974  4789999


Q ss_pred             ecCCeEEEEECCCCC-CCceeeccccccCCCCcEEEEEEee----cCCceEEEEEeCCCcEEEeeccCCCCCcccccccc
Q psy17342        138 TYSGQIVLWDTRVQK-KTPVHRTPLSVMAHTHPVFCMSVIG----TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY  212 (401)
Q Consensus       138 ~~dg~v~iw~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~  212 (401)
                      +.||.|++||+.+.+ ..      ..+.+|...|.++.|.+    ++++.+|++++.||.|++||++....+...+....
T Consensus        87 ~~dg~i~iwd~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~  160 (357)
T 3i2n_A           87 DFGGNLHIWNLEAPEMPV------YSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ  160 (357)
T ss_dssp             ETTSCEEEECTTSCSSCS------EEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT
T ss_pred             cCCCeEEEEeCCCCCccE------EEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC
Confidence            999999999999876 32      23568999999997742    68899999999999999999986443333322211


Q ss_pred             ccccCCccceEEEE----eccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCc---cCCCCCCCcEE
Q psy17342        213 NNKQTKNLAVLSLA----FPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR---AQGHIDFSHLY  285 (401)
Q Consensus       213 ~~~~~~~~~v~~~~----~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~~~~~~~l  285 (401)
                         ......+.+++    |+ +++.++++++.|+.|++||++...   ......|...|.+++|+|   +      +.+|
T Consensus       161 ---~~~~~~v~~~~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~v~~~~~~~~~~~------~~~l  227 (357)
T 3i2n_A          161 ---GENKRDCWTVAFGNAYN-QEERVVCAGYDNGDIKLFDLRNMA---LRWETNIKNGVCSLEFDRKDIS------MNKL  227 (357)
T ss_dssp             ---TSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTE---EEEEEECSSCEEEEEESCSSSS------CCEE
T ss_pred             ---CCCCCceEEEEEEeccC-CCCCEEEEEccCCeEEEEECccCc---eeeecCCCCceEEEEcCCCCCC------CCEE
Confidence               11244788888    56 789999999999999999998543   234466899999999999   6      7899


Q ss_pred             EEEeCCCeEEEEEeeCCCceEEEe-----ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCC------------
Q psy17342        286 LTSSYDWSVKLWNIKENKPVHSFN-----EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV------------  348 (401)
Q Consensus       286 ~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------------  348 (401)
                      ++++.|+.|++||+++++++..+.     .|...|.+++|+|+++.+|++++.||.|++||++.....            
T Consensus       228 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~  307 (357)
T 3i2n_A          228 VATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGV  307 (357)
T ss_dssp             EEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCC
T ss_pred             EEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccc
Confidence            999999999999999887776665     899999999999998768999999999999999875533            


Q ss_pred             ----cceEEeecCCCCeEEEEecCCCcEEE-EEecCCcEEEEEeccC
Q psy17342        349 ----PATSAIVEGAPALSRVTWTPNGTQLC-VGDEKGAITMFDVGEV  390 (401)
Q Consensus       349 ----~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~dg~v~iw~~~~~  390 (401)
                          ..+.....|...|++++|+|++++|+ +++.||.|++||+.+.
T Consensus       308 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          308 AGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             CCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             ccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence                23334456788999999999999998 8999999999999875

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.8e-43  Score=306.24  Aligned_cols=273  Identities=18%  Similarity=0.247  Sum_probs=232.3

Q ss_pred             hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH   86 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   86 (401)
                      +..++||+.|+.++||+......                      .....    ..+|...|.+++|+|++..+++++  
T Consensus        48 ~~~l~tgs~D~~v~vW~~~~~~~----------------------~~~~~----l~gh~~~v~~~~~~~~~~~l~s~s--   99 (321)
T 3ow8_A           48 SETVVTGSLDDLVKVWKWRDERL----------------------DLQWS----LEGHQLGVVSVDISHTLPIAASSS--   99 (321)
T ss_dssp             -CEEEEEETTSCEEEEEEETTEE----------------------EEEEE----ECCCSSCEEEEEECSSSSEEEEEE--
T ss_pred             CCEEEEEcCCCCEEEEECCCCCe----------------------eeeee----eccCCCCEEEEEECCCCCEEEEEe--
Confidence            56899999999999999864430                      00001    125778999999999999999999  


Q ss_pred             cCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCC
Q psy17342         87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH  166 (401)
Q Consensus        87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  166 (401)
                              .|++|++||+.+++.+..+. .+...+.+++|+|++ .+|++|+.+|.|++|+++++...      ..+..|
T Consensus       100 --------~D~~i~lWd~~~~~~~~~~~-~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~------~~~~~~  163 (321)
T 3ow8_A          100 --------LDAHIRLWDLENGKQIKSID-AGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKE------YSLDTR  163 (321)
T ss_dssp             --------TTSEEEEEETTTTEEEEEEE-CCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEE------EEEECS
T ss_pred             --------CCCcEEEEECCCCCEEEEEe-CCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCcee------EEecCC
Confidence                    79999999999876654443 357789999999987 78999999999999999887643      234678


Q ss_pred             CCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEE
Q psy17342        167 THPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYS  246 (401)
Q Consensus       167 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~  246 (401)
                      ...|.+++|  +|++.+|++++.||.|++||+++..   ....     +.+|...|.+++|+ |++++|++|+.|+.|++
T Consensus       164 ~~~v~~~~~--spdg~~lasg~~dg~i~iwd~~~~~---~~~~-----~~~h~~~v~~l~~s-pd~~~l~s~s~dg~i~i  232 (321)
T 3ow8_A          164 GKFILSIAY--SPDGKYLASGAIDGIINIFDIATGK---LLHT-----LEGHAMPIRSLTFS-PDSQLLVTASDDGYIKI  232 (321)
T ss_dssp             SSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTE---EEEE-----ECCCSSCCCEEEEC-TTSCEEEEECTTSCEEE
T ss_pred             CceEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCc---EEEE-----EcccCCceeEEEEc-CCCCEEEEEcCCCeEEE
Confidence            889999999  9999999999999999999997521   1222     34488899999999 89999999999999999


Q ss_pred             EeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCc
Q psy17342        247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPA  326 (401)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~  326 (401)
                      ||++.  ......+.+|...|.+++|+|+      +.+|++++.|++|++||+++++++.++..|...|.+++|+|++. 
T Consensus       233 wd~~~--~~~~~~~~~h~~~v~~~~~sp~------~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~-  303 (321)
T 3ow8_A          233 YDVQH--ANLAGTLSGHASWVLNVAFCPD------DTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGS-  303 (321)
T ss_dssp             EETTT--CCEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-
T ss_pred             EECCC--cceeEEEcCCCCceEEEEECCC------CCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCC-
Confidence            99984  3467788999999999999998      79999999999999999999999999999999999999999997 


Q ss_pred             EEEEEecCCEEEEEeCC
Q psy17342        327 LFATVEVAGRVDLWNLN  343 (401)
Q Consensus       327 ~l~~~~~d~~i~iwd~~  343 (401)
                      +|++++.|+.|++||..
T Consensus       304 ~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          304 KIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEEEETTCCEEEEECC
T ss_pred             EEEEEeCCCeEEEEeCC
Confidence            78999999999999963

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.3e-42  Score=304.22  Aligned_cols=292  Identities=18%  Similarity=0.244  Sum_probs=236.7

Q ss_pred             ccccceEEEEecCC-CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceE----EEecCCCeeEEEEeCCCCceEEEE
Q psy17342         63 SKNRNVTYMDWSTQ-HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEF----EFFCQSPVLSCCFAKFNPYLILGG  137 (401)
Q Consensus        63 ~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~g  137 (401)
                      +|.+.|++++|+|+ +++|++++          .|++|+|||+.+.+.....    ...|...|.+++|+|++ .+|++|
T Consensus        36 GH~~~V~~v~~sp~~~~~l~S~s----------~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~  104 (340)
T 4aow_A           36 GHNGWVTQIATTPQFPDMILSAS----------RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG-QFALSG  104 (340)
T ss_dssp             CCSSCEEEEEECTTCTTEEEEEE----------TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS-SEEEEE
T ss_pred             CccCCEEEEEEeCCCCCEEEEEc----------CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC-CEEEEE
Confidence            58899999999998 56788888          7999999999865543222    23478899999999977 789999


Q ss_pred             ecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccC
Q psy17342        138 TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT  217 (401)
Q Consensus       138 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  217 (401)
                      +.|+.|++|+.......      .....+...+..+.+  .+++..|++++.|+.+++||+....  .....     ..+
T Consensus       105 ~~d~~i~~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~l~s~s~d~~~~~~d~~~~~--~~~~~-----~~~  169 (340)
T 4aow_A          105 SWDGTLRLWDLTTGTTT------RRFVGHTKDVLSVAF--SSDNRQIVSGSRDKTIKLWNTLGVC--KYTVQ-----DES  169 (340)
T ss_dssp             ETTSEEEEEETTTTEEE------EEEECCSSCEEEEEE--CTTSSCEEEEETTSCEEEECTTSCE--EEEEC-----SSS
T ss_pred             cccccceEEeeccccee------eeecCCCCceeEEEE--eecCccceeecCCCeEEEEEeCCCc--eEEEE-----ecc
Confidence            99999999999876543      223567778888888  8999999999999999999986421  11111     344


Q ss_pred             CccceEEEEeccCC-CCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEE
Q psy17342        218 KNLAVLSLAFPQND-VNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKL  296 (401)
Q Consensus       218 ~~~~v~~~~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~i  296 (401)
                      |...+.+++|++.. ...+++++.|+.|++||++.  .+.+..+.+|.++|++++|+|+      +++|++|+.|+.|++
T Consensus       170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~--~~~~~~~~~h~~~v~~~~~s~~------~~~l~s~s~Dg~i~i  241 (340)
T 4aow_A          170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPD------GSLCASGGKDGQAML  241 (340)
T ss_dssp             CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTT------SSEEEEEETTCEEEE
T ss_pred             ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC--CceeeEecCCCCcEEEEEECCC------CCEEEEEeCCCeEEE
Confidence            78899999998433 34678899999999999984  3467788999999999999998      799999999999999


Q ss_pred             EEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceE------EeecCCCCeEEEEecCCC
Q psy17342        297 WNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATS------AIVEGAPALSRVTWTPNG  370 (401)
Q Consensus       297 wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~~~~v~~~~~s~~g  370 (401)
                      ||+++.+++..+.. ...|.+++|+|++.  +++++.|+.|++||+++......+.      ....|...|++++|+|+|
T Consensus       242 wd~~~~~~~~~~~~-~~~v~~~~~~~~~~--~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg  318 (340)
T 4aow_A          242 WDLNEGKHLYTLDG-GDIINALCFSPNRY--WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG  318 (340)
T ss_dssp             EETTTTEEEEEEEC-SSCEEEEEECSSSS--EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS
T ss_pred             EEeccCceeeeecC-CceEEeeecCCCCc--eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC
Confidence            99999999888876 46899999999985  5566779999999998764332221      123567889999999999


Q ss_pred             cEEEEEecCCcEEEEEeccCc
Q psy17342        371 TQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       371 ~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      ++|++|+.||.|+|||+++|.
T Consensus       319 ~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          319 QTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             SEEEEEETTSCEEEEEEEC--
T ss_pred             CEEEEEeCCCEEEEEeCCCcC
Confidence            999999999999999999984

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-43  Score=318.33  Aligned_cols=276  Identities=14%  Similarity=0.191  Sum_probs=233.1

Q ss_pred             hhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEE
Q psy17342          3 WAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL   82 (401)
Q Consensus         3 ~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   82 (401)
                      |...+..+++|+.||.|++||.........                            ...|.+.|.+++|+|++++|++
T Consensus       116 ~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~----------------------------l~~h~~~V~~v~~~~~~~~l~s  167 (410)
T 1vyh_C          116 FHPVFSVMVSASEDATIKVWDYETGDFERT----------------------------LKGHTDSVQDISFDHSGKLLAS  167 (410)
T ss_dssp             ECSSSSEEEEEESSSCEEEEETTTCCCCEE----------------------------ECCCSSCEEEEEECTTSSEEEE
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCcEEEE----------------------------EeccCCcEEEEEEcCCCCEEEE
Confidence            444567899999999999999876541100                            0146788999999999999999


Q ss_pred             EEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecccc
Q psy17342         83 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLS  162 (401)
Q Consensus        83 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~  162 (401)
                      ++          .|++|++||+.+++.+..+ ..|...|.+++|+|++ .+|++|+.|+.|++||+.++...      ..
T Consensus       168 gs----------~D~~i~iwd~~~~~~~~~~-~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~------~~  229 (410)
T 1vyh_C          168 CS----------ADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCV------KT  229 (410)
T ss_dssp             EE----------TTSCCCEEETTSSCEEECC-CCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE------EE
T ss_pred             Ee----------CCCeEEEEeCCCCceeEEE-cCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEE------EE
Confidence            99          7999999999876554333 3478899999999977 78999999999999999887643      23


Q ss_pred             ccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCC-----------
Q psy17342        163 VMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQND-----------  231 (401)
Q Consensus       163 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------  231 (401)
                      +.+|...|.++.+  ++++.+|++++.|+.|++||+....   ....     +.+|...|.+++|+|..           
T Consensus       230 ~~~h~~~v~~~~~--~~~g~~l~s~s~D~~v~vwd~~~~~---~~~~-----~~~h~~~v~~~~~~~~~~~~~~~~~~~~  299 (410)
T 1vyh_C          230 FTGHREWVRMVRP--NQDGTLIASCSNDQTVRVWVVATKE---CKAE-----LREHRHVVECISWAPESSYSSISEATGS  299 (410)
T ss_dssp             EECCSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCC---EEEE-----ECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred             EeCCCccEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCc---eeeE-----ecCCCceEEEEEEcCcccccchhhhccc
Confidence            5689999999999  9999999999999999999997522   1112     33488899999999421           


Q ss_pred             --------CCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC
Q psy17342        232 --------VNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK  303 (401)
Q Consensus       232 --------~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  303 (401)
                              +.++++|+.|+.|++||++.  ..++..+.+|...|.+++|+|+      +.+|++|+.|+.|++||+++++
T Consensus       300 ~~~~~~~~g~~l~sgs~D~~i~iwd~~~--~~~~~~~~~h~~~v~~v~~~~~------g~~l~s~s~D~~i~vwd~~~~~  371 (410)
T 1vyh_C          300 ETKKSGKPGPFLLSGSRDKTIKMWDVST--GMCLMTLVGHDNWVRGVLFHSG------GKFILSCADDKTLRVWDYKNKR  371 (410)
T ss_dssp             C-------CCEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECSS------SSCEEEEETTTEEEEECCTTSC
T ss_pred             cccccCCCCCEEEEEeCCCeEEEEECCC--CceEEEEECCCCcEEEEEEcCC------CCEEEEEeCCCeEEEEECCCCc
Confidence                    56899999999999999984  4467888999999999999998      7999999999999999999999


Q ss_pred             ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCC
Q psy17342        304 PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       304 ~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~  343 (401)
                      ++..+.+|...|++++|+|+++ +|++|+.|+.|++|+++
T Consensus       372 ~~~~~~~h~~~v~~l~~~~~~~-~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          372 CMKTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CCEEEECCSSCEEEEEECSSSS-CEEEEETTSEEEEEC--
T ss_pred             eEEEEcCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Confidence            9999999999999999999997 79999999999999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.1e-43  Score=312.32  Aligned_cols=285  Identities=19%  Similarity=0.273  Sum_probs=215.9

Q ss_pred             hhhhhcccccccc------ccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCC
Q psy17342          3 WAEAGESQISGTL------HGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQ   76 (401)
Q Consensus         3 ~~~~~~~~~~g~~------~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   76 (401)
                      |.--|.++++|+.      ||.+++|+.........+                        ......|...|.+++|+|+
T Consensus        50 fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~------------------------~~~~~~~~~~V~~~~~s~d  105 (357)
T 4g56_B           50 YRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL------------------------CTAGVQTEAGVTDVAWVSE  105 (357)
T ss_dssp             ECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG------------------------CSEEEECSSCEEEEEEETT
T ss_pred             ECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE------------------------ecccCCCCCCEEEEEEcCC
Confidence            4456788999987      555666654433311110                        0111246678999999999


Q ss_pred             CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCce--E-EEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCC
Q psy17342         77 HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE--F-EFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKK  153 (401)
Q Consensus        77 ~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~--~-~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~  153 (401)
                      +. +++++          .|++|+|||+.+++....  + ...|...|++++|+|++ ++|++|+.|+.|++||+++++.
T Consensus       106 ~~-~l~~s----------~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~  173 (357)
T 4g56_B          106 KG-ILVAS----------DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAV  173 (357)
T ss_dssp             TE-EEEEE----------TTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEE
T ss_pred             CC-EEEEE----------CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcE
Confidence            85 55667          699999999987654432  2 23578999999999987 7899999999999999988764


Q ss_pred             CceeeccccccCCCCcEEEEEEeecCCce-EEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCC
Q psy17342        154 TPVHRTPLSVMAHTHPVFCMSVIGTQNAH-NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDV  232 (401)
Q Consensus       154 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  232 (401)
                      .      ..+.+|...|.+++|  ++++. .+++++.||.|++||++... +......     ..+...+.+++|+|.++
T Consensus       174 ~------~~~~~h~~~v~~v~~--s~~~~~~~~s~~~dg~v~~wd~~~~~-~~~~~~~-----~~~~~~v~~v~~sp~~~  239 (357)
T 4g56_B          174 L------KSYNAHSSEVNCVAA--CPGKDTIFLSCGEDGRILLWDTRKPK-PATRIDF-----CASDTIPTSVTWHPEKD  239 (357)
T ss_dssp             E------EEECCCSSCEEEEEE--CTTCSSCEEEEETTSCEEECCTTSSS-CBCBCCC-----TTCCSCEEEEEECTTST
T ss_pred             E------EEEcCCCCCEEEEEE--ccCCCceeeeeccCCceEEEECCCCc-eeeeeee-----ccccccccchhhhhccc
Confidence            3      235789999999999  77764 78999999999999998632 2222222     23667899999996567


Q ss_pred             CeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC
Q psy17342        233 NNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR  312 (401)
Q Consensus       233 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  312 (401)
                      .+|++|+.|+.|++||++..  +.+..+.+|...|++++|+|+.     +.+|++|+.|++|+|||+++++++..+ +|.
T Consensus       240 ~~la~g~~d~~i~~wd~~~~--~~~~~~~~~~~~v~~l~~sp~~-----~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~  311 (357)
T 4g56_B          240 DTFACGDETGNVSLVNIKNP--DSAQTSAVHSQNITGLAYSYHS-----SPFLASISEDCTVAVLDADFSEVFRDL-SHR  311 (357)
T ss_dssp             TEEEEEESSSCEEEEESSCG--GGCEEECCCSSCEEEEEECSSS-----SCCEEEEETTSCEEEECTTSCEEEEEC-CCS
T ss_pred             ceEEEeecccceeEEECCCC--cEeEEEeccceeEEEEEEcCCC-----CCEEEEEeCCCEEEEEECCCCcEeEEC-CCC
Confidence            78999999999999999843  4678899999999999999984     578999999999999999988776654 799


Q ss_pred             CceEEEEECC-CCCcEEEEEecCCEEEEEeCCCCC
Q psy17342        313 DYVMDVQWSP-INPALFATVEVAGRVDLWNLNLDT  346 (401)
Q Consensus       313 ~~v~~v~~~~-~~~~~l~~~~~d~~i~iwd~~~~~  346 (401)
                      ..|++++|+| ++. +|++++.||+|++||+.+..
T Consensus       312 ~~V~~vafsP~d~~-~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          312 DFVTGVAWSPLDHS-KFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             SCEEEEEECSSSTT-EEEEEETTSCEEEEECC---
T ss_pred             CCEEEEEEeCCCCC-EEEEEcCCCeEEEEECCCCC
Confidence            9999999999 565 89999999999999997644

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.3e-42  Score=300.43  Aligned_cols=285  Identities=15%  Similarity=0.205  Sum_probs=237.8

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      +|.+.|.+++|+|++++|++++          .|+.|++|+..+++.... ...|...|.+++|+|++ ++|++|+.|+.
T Consensus        21 gh~~~v~~~~~s~~~~~l~s~~----------~dg~i~iw~~~~~~~~~~-~~~h~~~v~~~~~~~~~-~~l~s~~~d~~   88 (312)
T 4ery_A           21 GHTKAVSSVKFSPNGEWLASSS----------ADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDS-NLLVSASDDKT   88 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEE----------TTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECTTS-SEEEEEETTSE
T ss_pred             ccCCcEEEEEECCCCCEEEEee----------CCCeEEEEeCCCcccchh-hccCCCceEEEEEcCCC-CEEEEECCCCE
Confidence            5779999999999999999999          799999999987665433 34578899999999977 79999999999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      |++||+++++..      ..+.+|...|.+++|  +|++.+|++++.|+.|++||++...   ....     ...|...|
T Consensus        89 i~vwd~~~~~~~------~~~~~~~~~v~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~-----~~~~~~~v  152 (312)
T 4ery_A           89 LKIWDVSSGKCL------KTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGK---CLKT-----LPAHSDPV  152 (312)
T ss_dssp             EEEEETTTCCEE------EEEECCSSCEEEEEE--CSSSSEEEEEETTSCEEEEETTTCC---EEEE-----ECCCSSCE
T ss_pred             EEEEECCCCcEE------EEEcCCCCCEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCE---EEEE-----ecCCCCcE
Confidence            999999887643      235689999999999  8999999999999999999997522   1112     23477899


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeee-cCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY-EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE  301 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  301 (401)
                      .+++|+ +++.++++++.|+.|++||++...  .+..+ ..+..++..++|+|+      +++|++++.|+.|++||+++
T Consensus       153 ~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~d~~i~iwd~~~  223 (312)
T 4ery_A          153 SAVHFN-RDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPN------GKYILAATLDNTLKLWDYSK  223 (312)
T ss_dssp             EEEEEC-TTSSEEEEEETTSCEEEEETTTCC--EEEEECCSSCCCEEEEEECTT------SSEEEEEETTTEEEEEETTT
T ss_pred             EEEEEc-CCCCEEEEEeCCCcEEEEECCCCc--eeeEEeccCCCceEEEEECCC------CCEEEEEcCCCeEEEEECCC
Confidence            999999 799999999999999999997443  34443 456778999999998      79999999999999999999


Q ss_pred             CCceEEEeecCCceE--EEEEC-CCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEe-
Q psy17342        302 NKPVHSFNEFRDYVM--DVQWS-PINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGD-  377 (401)
Q Consensus       302 ~~~~~~~~~~~~~v~--~v~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-  377 (401)
                      ++++..+.+|.....  ...++ +++. ++++++.||.|++||+.+++.+..+   .+|...|.+++|+|++++|++++ 
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~p~~~~l~s~~~  299 (312)
T 4ery_A          224 GKCLKTYTGHKNEKYCIFANFSVTGGK-WIVSGSEDNLVYIWNLQTKEIVQKL---QGHTDVVISTACHPTENIIASAAL  299 (312)
T ss_dssp             TEEEEEECSSCCSSSCCCEEEECSSSC-EEEECCTTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECSSSSEEEEEEC
T ss_pred             CcEEEEEEecCCceEEEEEEEEeCCCc-EEEEECCCCEEEEEECCCchhhhhh---hccCCcEEEEeecCcCCceEEEEc
Confidence            999999988765432  23444 4554 8999999999999999987654433   46788999999999999999987 


Q ss_pred             -cCCcEEEEEec
Q psy17342        378 -EKGAITMFDVG  388 (401)
Q Consensus       378 -~dg~v~iw~~~  388 (401)
                       .|+.|++|+..
T Consensus       300 ~~d~~i~~W~~d  311 (312)
T 4ery_A          300 ENDKTIKLWKSD  311 (312)
T ss_dssp             TTTCCEEEEECC
T ss_pred             cCCccEEEecCC
Confidence             69999999964

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3e-42  Score=305.68  Aligned_cols=297  Identities=13%  Similarity=0.090  Sum_probs=243.9

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCC--CCceEEEecCCCeeEEEEeCCCCceEEEEecCC
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK--TTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG  141 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg  141 (401)
                      |.++|.+++|+|++++|++++          .|+.|++||+.+++  ....+ ..|...|.+++|+|++ .+|++++.||
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~----------~d~~v~i~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~-~~l~~~~~dg   74 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICP----------NNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPDS-NRIVTCGTDR   74 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEEC----------SSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETTT-TEEEEEETTS
T ss_pred             cCCCeEEEEECCCCCEEEEEe----------CCCEEEEEeCCCCcEEeeeee-cCCCCcccEEEEeCCC-CEEEEEcCCC
Confidence            668899999999999999998          79999999998765  33222 3578899999999976 7899999999


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccc
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA  221 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  221 (401)
                      .|++||+.+++....    ..+..|...|.+++|  ++++.+|++++.|+.|++||++...........    ..+|...
T Consensus        75 ~i~vwd~~~~~~~~~----~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~----~~~~~~~  144 (372)
T 1k8k_C           75 NAYVWTLKGRTWKPT----LVILRINRAARCVRW--APNEKKFAVGSGSRVISICYFEQENDWWVCKHI----KKPIRST  144 (372)
T ss_dssp             CEEEEEEETTEEEEE----EECCCCSSCEEEEEE--CTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE----CTTCCSC
T ss_pred             eEEEEECCCCeeeee----EEeecCCCceeEEEE--CCCCCEEEEEeCCCEEEEEEecCCCcceeeeee----ecccCCC
Confidence            999999977653322    234678999999999  899999999999999999999863321111111    2347889


Q ss_pred             eEEEEeccCCCCeEEEEcCCceEEEEeCCC----------------CCCCceeeecCCCCceeeeecCccCCCCCCCcEE
Q psy17342        222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHG----------------NKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLY  285 (401)
Q Consensus       222 v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~----------------~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l  285 (401)
                      |.+++|+ +++.++++++.|+.|++||++.                .....+..+.+|...|.+++|+|+      +++|
T Consensus       145 i~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l  217 (372)
T 1k8k_C          145 VLSLDWH-PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN------GSRV  217 (372)
T ss_dssp             EEEEEEC-TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS------SSEE
T ss_pred             eeEEEEc-CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC------CCEE
Confidence            9999999 7999999999999999999641                234567778899999999999998      7899


Q ss_pred             EEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC--CCC--C-------------
Q psy17342        286 LTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL--DTE--V-------------  348 (401)
Q Consensus       286 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~--~-------------  348 (401)
                      ++++.|+.|++||+++++++..+..|...|.+++|+|++. +++++ .|+.|++|++..  +..  .             
T Consensus       218 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (372)
T 1k8k_C          218 AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG  295 (372)
T ss_dssp             EEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred             EEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence            9999999999999999999999999999999999999996 67766 899999999987  310  0             


Q ss_pred             -------------cc--------eEEeecCCCCeEEEEec-CCC---cEEEEEecCCcEEEEEeccCc
Q psy17342        349 -------------PA--------TSAIVEGAPALSRVTWT-PNG---TQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       349 -------------~~--------~~~~~~~~~~v~~~~~s-~~g---~~l~~~~~dg~v~iw~~~~~~  391 (401)
                                   ..        .....+|...|++++|+ ++|   ++|++|+.||.|++|++.+++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          296 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             -CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             cchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence                         00        11113678899999976 666   999999999999999998864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-42  Score=303.57  Aligned_cols=294  Identities=19%  Similarity=0.202  Sum_probs=227.0

Q ss_pred             chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeE
Q psy17342          2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELL   81 (401)
Q Consensus         2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   81 (401)
                      .|..-+..+|+|+.||.|+||+...+...                       ....  ....|...|.+++|+|++++|+
T Consensus        23 ~~sp~g~~las~~~D~~i~iw~~~~~~~~-----------------------~~~~--~~~~h~~~v~~~~~sp~g~~l~   77 (345)
T 3fm0_A           23 AWNPAGTLLASCGGDRRIRIWGTEGDSWI-----------------------CKSV--LSEGHQRTVRKVAWSPCGNYLA   77 (345)
T ss_dssp             EECTTSSCEEEEETTSCEEEEEEETTEEE-----------------------EEEE--ECSSCSSCEEEEEECTTSSEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEEcCCCcce-----------------------eeee--eccccCCcEEEEEECCCCCEEE
Confidence            56667889999999999999997654300                       0000  0125778999999999999999


Q ss_pred             EEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecc
Q psy17342         82 LASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP  160 (401)
Q Consensus        82 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~  160 (401)
                      +++          .|+.|+||+...+....... ..|...|.+++|+|++ ++|++|+.|+.|++||+.........   
T Consensus        78 s~s----------~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~---  143 (345)
T 3fm0_A           78 SAS----------FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECV---  143 (345)
T ss_dssp             EEE----------TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEE---
T ss_pred             EEE----------CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEE---
Confidence            999          79999999998654322222 3478999999999977 79999999999999999876432111   


Q ss_pred             ccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC
Q psy17342        161 LSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE  240 (401)
Q Consensus       161 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  240 (401)
                      ..+..|...|.+++|  +|++.+|++++.|+.|++||++... ......     +.+|...|++++|+ |++++|++|+.
T Consensus       144 ~~~~~h~~~v~~~~~--~p~~~~l~s~s~d~~i~~w~~~~~~-~~~~~~-----~~~h~~~v~~l~~s-p~g~~l~s~s~  214 (345)
T 3fm0_A          144 SVLNSHTQDVKHVVW--HPSQELLASASYDDTVKLYREEEDD-WVCCAT-----LEGHESTVWSLAFD-PSGQRLASCSD  214 (345)
T ss_dssp             EEECCCCSCEEEEEE--CSSSSCEEEEETTSCEEEEEEETTE-EEEEEE-----ECCCSSCEEEEEEC-TTSSEEEEEET
T ss_pred             EEecCcCCCeEEEEE--CCCCCEEEEEeCCCcEEEEEecCCC-EEEEEE-----ecCCCCceEEEEEC-CCCCEEEEEeC
Confidence            234689999999999  9999999999999999999987421 111112     34588999999999 89999999999


Q ss_pred             CceEEEEeCCCCCC-------------CceeeecC-CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC---
Q psy17342        241 DGNVYSACRHGNKA-------------GNVECYEG-HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK---  303 (401)
Q Consensus       241 d~~i~~~~~~~~~~-------------~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---  303 (401)
                      |+.|++|+......             .++..+.+ |...|.+++|+|.      +..|++++.|+.|++|+...+.   
T Consensus       215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~------~~~l~s~~~d~~i~vw~~~~~~~~~  288 (345)
T 3fm0_A          215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL------TGALATACGDDAIRVFQEDPNSDPQ  288 (345)
T ss_dssp             TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT------TCCEEEEETTSCEEEEEECTTSCTT
T ss_pred             CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecC------CCEEEEEeCCCeEEEEEeCCCCCcc
Confidence            99999998642111             12233444 8889999999998      7899999999999999987542   


Q ss_pred             -ceE-----EEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCc
Q psy17342        304 -PVH-----SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVP  349 (401)
Q Consensus       304 -~~~-----~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  349 (401)
                       +..     ...+|...|++++|+|+++.+|++++.||.|++|++.+.+...
T Consensus       289 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~  340 (345)
T 3fm0_A          289 QPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH  340 (345)
T ss_dssp             SCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred             eeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence             222     2246889999999999986689999999999999998876543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.1e-41  Score=295.91  Aligned_cols=284  Identities=11%  Similarity=0.188  Sum_probs=237.7

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE----ecCCCeeEEEEeCCCCceEEEEe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF----FCQSPVLSCCFAKFNPYLILGGT  138 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~g~  138 (401)
                      .|...|.+++|+|++++|++++           |+.|++||+.+++.......    .|...|.+++|+|++ ++|++++
T Consensus        49 ~h~~~v~~~~~~~~~~~l~~~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~  116 (337)
T 1gxr_A           49 NHGEVVCAVTISNPTRHVYTGG-----------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGG  116 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-----------BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEE
T ss_pred             cCCCceEEEEEecCCcEEEEcC-----------CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC-CEEEEEc
Confidence            5778999999999998888776           89999999987654333222    478899999999977 7888999


Q ss_pred             cCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342        139 YSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       139 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      .||.|++||+.+.+....    ..+..|...|.+++|  ++++.++++++.||.|++||++..   .....     ...|
T Consensus       117 ~d~~i~~~d~~~~~~~~~----~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~v~~~d~~~~---~~~~~-----~~~~  182 (337)
T 1gxr_A          117 EASTLSIWDLAAPTPRIK----AELTSSAPACYALAI--SPDSKVCFSCCSDGNIAVWDLHNQ---TLVRQ-----FQGH  182 (337)
T ss_dssp             SSSEEEEEECCCC--EEE----EEEECSSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTT---EEEEE-----ECCC
T ss_pred             CCCcEEEEECCCCCccee----eecccCCCceEEEEE--CCCCCEEEEEeCCCcEEEEeCCCC---ceeee-----eecc
Confidence            999999999988763222    234689999999999  899999999999999999999752   11222     2347


Q ss_pred             ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      ...+.+++|+ ++++.+++++.|+.|++||++...  .+..+ .+...+.+++|+|+      ++++++++.|+.|++||
T Consensus       183 ~~~i~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~-~~~~~v~~~~~s~~------~~~l~~~~~~~~i~~~~  252 (337)
T 1gxr_A          183 TDGASCIDIS-NDGTKLWTGGLDNTVRSWDLREGR--QLQQH-DFTSQIFSLGYCPT------GEWLAVGMESSNVEVLH  252 (337)
T ss_dssp             SSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTE--EEEEE-ECSSCEEEEEECTT------SSEEEEEETTSCEEEEE
T ss_pred             cCceEEEEEC-CCCCEEEEEecCCcEEEEECCCCc--eEeee-cCCCceEEEEECCC------CCEEEEEcCCCcEEEEE
Confidence            8899999999 799999999999999999997543  34444 47889999999998      79999999999999999


Q ss_pred             eeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEec
Q psy17342        299 IKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDE  378 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  378 (401)
                      +++++. ..+..|...|.+++|+|+++ +|++++.||.|++||+.+++...    ...+...+.+++|+|++++|++++.
T Consensus       253 ~~~~~~-~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~  326 (337)
T 1gxr_A          253 VNKPDK-YQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIF----QSKESSSVLSCDISVDDKYIVTGSG  326 (337)
T ss_dssp             TTSSCE-EEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEE----EEECSSCEEEEEECTTSCEEEEEET
T ss_pred             CCCCCe-EEEcCCccceeEEEECCCCC-EEEEecCCCcEEEEECCCCeEEE----EecCCCcEEEEEECCCCCEEEEecC
Confidence            987764 46778899999999999997 78999999999999999876542    2356788999999999999999999


Q ss_pred             CCcEEEEEec
Q psy17342        379 KGAITMFDVG  388 (401)
Q Consensus       379 dg~v~iw~~~  388 (401)
                      ||.|++|++.
T Consensus       327 dg~i~iw~~~  336 (337)
T 1gxr_A          327 DKKATVYEVI  336 (337)
T ss_dssp             TSCEEEEEEE
T ss_pred             CCeEEEEEEe
Confidence            9999999984

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.7e-42  Score=303.15  Aligned_cols=275  Identities=15%  Similarity=0.211  Sum_probs=227.8

Q ss_pred             CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCe
Q psy17342          1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL   80 (401)
Q Consensus         1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   80 (401)
                      |.|..-+..+++|+.||.+++||......+..                        +    ..|...|.+++|+|++++|
T Consensus        61 ~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~------------------------~----~~~~~~v~~~~~s~~~~~l  112 (340)
T 1got_B           61 MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA------------------------I----PLRSSWVMTCAYAPSGNYV  112 (340)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETTTCCEEEE------------------------E----ECSSSCEEEEEECTTSSEE
T ss_pred             EEECCCCCEEEEEeCCCcEEEEECCCCCcceE------------------------e----ecCCccEEEEEECCCCCEE
Confidence            35666788999999999999999765541100                        0    1355789999999999999


Q ss_pred             EEEEeccCCCCCCCCCcEEEEEeCcCCCCCc---eEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCcee
Q psy17342         81 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTP---EFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVH  157 (401)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~  157 (401)
                      ++++          .|+.|++|++.+.....   .....|...|.++.|++++  .+++++.|+.|++||+.+++..   
T Consensus       113 ~s~~----------~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~---  177 (340)
T 1got_B          113 ACGG----------LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT---  177 (340)
T ss_dssp             EEEE----------TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEE---
T ss_pred             EEEe----------CCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEE---
Confidence            9999          79999999998654322   2234578999999999865  4888899999999999887643   


Q ss_pred             eccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEE
Q psy17342        158 RTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV  237 (401)
Q Consensus       158 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  237 (401)
                         ..+.+|.+.|.+++|  +|++.++++++.|+.|++||++... .  ...     +.+|...|.+++|+ |++++|++
T Consensus       178 ---~~~~~h~~~v~~~~~--~~~~~~l~sg~~d~~v~~wd~~~~~-~--~~~-----~~~h~~~v~~v~~~-p~~~~l~s  243 (340)
T 1got_B          178 ---TTFTGHTGDVMSLSL--APDTRLFVSGACDASAKLWDVREGM-C--RQT-----FTGHESDINAICFF-PNGNAFAT  243 (340)
T ss_dssp             ---EEECCCSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCS-E--EEE-----ECCCSSCEEEEEEC-TTSSEEEE
T ss_pred             ---EEEcCCCCceEEEEE--CCCCCEEEEEeCCCcEEEEECCCCe-e--EEE-----EcCCcCCEEEEEEc-CCCCEEEE
Confidence               235789999999999  8999999999999999999997522 1  111     34588899999999 79999999


Q ss_pred             EcCCceEEEEeCCCCCCCceeeec--CCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCce
Q psy17342        238 GCEDGNVYSACRHGNKAGNVECYE--GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYV  315 (401)
Q Consensus       238 ~~~d~~i~~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  315 (401)
                      |+.|+.|++||++...  .+..+.  .+...|.+++|+|+      +.+|++|+.|+.|++||+.+++.+..+.+|...|
T Consensus       244 ~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~------g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v  315 (340)
T 1got_B          244 GSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKS------GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV  315 (340)
T ss_dssp             EETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTT------SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             EcCCCcEEEEECCCCc--EEEEEccCCcccceEEEEECCC------CCEEEEECCCCeEEEEEcccCcEeeEeecCCCcE
Confidence            9999999999998543  344443  33457999999999      7999999999999999999999999999999999


Q ss_pred             EEEEECCCCCcEEEEEecCCEEEEEe
Q psy17342        316 MDVQWSPINPALFATVEVAGRVDLWN  341 (401)
Q Consensus       316 ~~v~~~~~~~~~l~~~~~d~~i~iwd  341 (401)
                      .+++|+|++. +|++|+.|+.|+|||
T Consensus       316 ~~~~~s~dg~-~l~s~s~D~~i~iWd  340 (340)
T 1got_B          316 SCLGVTDDGM-AVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEECTTSS-CEEEEETTSCEEEEC
T ss_pred             EEEEEcCCCC-EEEEEcCCccEEecC
Confidence            9999999997 799999999999997

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-42  Score=313.98  Aligned_cols=334  Identities=14%  Similarity=0.186  Sum_probs=254.0

Q ss_pred             chhhhhc-cccccccccccccccc----cCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCC
Q psy17342          2 DWAEAGE-SQISGTLHGLQADWNE----EGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQ   76 (401)
Q Consensus         2 ~~~~~~~-~~~~g~~~g~~~vw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   76 (401)
                      .|...+. ++++|+.||.+++|++    .....+-.+.....+..+...            ......|...|.+++|+|+
T Consensus        52 ~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~v~~~~~s~~  119 (425)
T 1r5m_A           52 TWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFAL------------SASSGKTTNQVTCLAWSHD  119 (425)
T ss_dssp             EECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCC------------C------CBCEEEEEECTT
T ss_pred             EECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccc------------cccccCCCCceEEEEEcCC
Confidence            4555677 8999999999999998    554421010000000000000            0011135679999999999


Q ss_pred             CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCce
Q psy17342         77 HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPV  156 (401)
Q Consensus        77 ~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~  156 (401)
                      +++|++++          .|+.|++||.. ++... ....|...|.+++|+|++ .+|++++.||.|++||+.+++....
T Consensus       120 ~~~l~~~~----------~dg~i~i~~~~-~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~  186 (425)
T 1r5m_A          120 GNSIVTGV----------ENGELRLWNKT-GALLN-VLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTVMQH  186 (425)
T ss_dssp             SSEEEEEE----------TTSCEEEEETT-SCEEE-EECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEEEEE
T ss_pred             CCEEEEEe----------CCCeEEEEeCC-CCeee-eccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEE
Confidence            99999999          79999999943 44332 233478899999999977 6888999999999999987764322


Q ss_pred             eeccccccCCCCc---------------EEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccc
Q psy17342        157 HRTPLSVMAHTHP---------------VFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA  221 (401)
Q Consensus       157 ~~~~~~~~~~~~~---------------v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  221 (401)
                            +..+...               +.+++|  ++++ .+++++.||.|++||++... ..  ..     ...|...
T Consensus       187 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~g~i~~~d~~~~~-~~--~~-----~~~~~~~  249 (425)
T 1r5m_A          187 ------FELKETGGSSINAENHSGDGSLGVDVEW--VDDD-KFVIPGPKGAIFVYQITEKT-PT--GK-----LIGHHGP  249 (425)
T ss_dssp             ------ECCC---------------CCCBSCCEE--EETT-EEEEECGGGCEEEEETTCSS-CS--EE-----ECCCSSC
T ss_pred             ------eeccccCccceeeccccCCcceeeEEEE--cCCC-EEEEEcCCCeEEEEEcCCCc-ee--ee-----eccCCCc
Confidence                  2334444               888998  6664 58899999999999998632 11  11     2347889


Q ss_pred             eEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342        222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE  301 (401)
Q Consensus       222 v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  301 (401)
                      |.+++|+ +++.+|++++.|+.|++||++..  ..+..+.+|...|.+++|+|+      + ++++++.|+.|++||+++
T Consensus       250 i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~------~-~l~~~~~d~~i~i~d~~~  319 (425)
T 1r5m_A          250 ISVLEFN-DTNKLLLSASDDGTLRIWHGGNG--NSQNCFYGHSQSIVSASWVGD------D-KVISCSMDGSVRLWSLKQ  319 (425)
T ss_dssp             EEEEEEE-TTTTEEEEEETTSCEEEECSSSB--SCSEEECCCSSCEEEEEEETT------T-EEEEEETTSEEEEEETTT
T ss_pred             eEEEEEC-CCCCEEEEEcCCCEEEEEECCCC--ccceEecCCCccEEEEEECCC------C-EEEEEeCCCcEEEEECCC
Confidence            9999999 78999999999999999999843  467788889999999999997      6 999999999999999999


Q ss_pred             CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC-----------------CcceEEeecCCC--CeE
Q psy17342        302 NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE-----------------VPATSAIVEGAP--ALS  362 (401)
Q Consensus       302 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----------------~~~~~~~~~~~~--~v~  362 (401)
                      ++++..+..|...|.+++|+|+++ +|++++.||.|++||+.+...                 ...+.....+..  .|+
T Consensus       320 ~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  398 (425)
T 1r5m_A          320 NTLLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIF  398 (425)
T ss_dssp             TEEEEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEE
T ss_pred             CcEeEecccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceE
Confidence            999999999999999999999997 899999999999999987651                 002222334544  899


Q ss_pred             EEEecCCCcEEEEEecCCcEEEEEec
Q psy17342        363 RVTWTPNGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       363 ~~~~s~~g~~l~~~~~dg~v~iw~~~  388 (401)
                      +++|+|++++|++++.||.|++|+++
T Consensus       399 ~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          399 DLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             EEEccCCCceEEEEecCceEEEEeec
Confidence            99999999999999999999999985

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.8e-41  Score=290.59  Aligned_cols=256  Identities=18%  Similarity=0.228  Sum_probs=216.1

Q ss_pred             EEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcE
Q psy17342        114 EFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRL  193 (401)
Q Consensus       114 ~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i  193 (401)
                      ...|...|++++|+|++ .+|++|+.||.|++||+.++...      ..+..|..+|.+++|  ++++++|++++.|++|
T Consensus         9 ~~~h~~~V~~~~fsp~~-~~l~s~~~dg~v~lWd~~~~~~~------~~~~~~~~~v~~~~~--~~~~~~l~s~s~d~~i   79 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVEV------RSIQVTETPVRAGKF--IARKNWIIVGSDDFRI   79 (304)
T ss_dssp             EEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEE------EEEECCSSCEEEEEE--EGGGTEEEEEETTSEE
T ss_pred             ecCCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCcee------EEeeccCCcEEEEEE--eCCCCEEEEECCCCEE
Confidence            34578999999999987 78999999999999999876543      234689999999999  8999999999999999


Q ss_pred             EEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecC
Q psy17342        194 CSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSH  273 (401)
Q Consensus       194 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  273 (401)
                      ++||+.+..   ....     +.+|...|.+++|+ |++.+|++|+.|+.|++||++... .....+.+|...|.+++|+
T Consensus        80 ~vwd~~~~~---~~~~-----~~~h~~~v~~~~~~-~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~~h~~~v~~v~~~  149 (304)
T 2ynn_A           80 RVFNYNTGE---KVVD-----FEAHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFN  149 (304)
T ss_dssp             EEEETTTCC---EEEE-----EECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEGGGTT-EEEEEECCCCSCEEEEEEC
T ss_pred             EEEECCCCc---EEEE-----EeCCCCcEEEEEEc-CCCCEEEEECCCCeEEEEECCCCc-chhhhhcccCCcEEEEEEC
Confidence            999997632   2222     34588999999999 889999999999999999987432 2456788999999999999


Q ss_pred             ccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEe-ecCCceEEEEECC--CCCcEEEEEecCCEEEEEeCCCCCCCcc
Q psy17342        274 RAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN-EFRDYVMDVQWSP--INPALFATVEVAGRVDLWNLNLDTEVPA  350 (401)
Q Consensus       274 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~  350 (401)
                      |..     +.+|++|+.|++|++||++++++...+. .|...+..++|+|  +++ +|++++.|+.|++||+++++.+..
T Consensus       150 p~~-----~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~D~~i~iWd~~~~~~~~~  223 (304)
T 2ynn_A          150 PKD-----PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCVAT  223 (304)
T ss_dssp             TTC-----TTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCC-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred             CCC-----CCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCC-EEEEEcCCCeEEEEeCCCCcccee
Confidence            954     6899999999999999998887777665 4567899999987  555 899999999999999998765544


Q ss_pred             eEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeeee
Q psy17342        351 TSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT  399 (401)
Q Consensus       351 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~~  399 (401)
                      +   .+|...|.+++|+|++++|++|+.||.|++||+.++  ++++.+.
T Consensus       224 ~---~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~--~~~~~~~  267 (304)
T 2ynn_A          224 L---EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY--KVEKTLN  267 (304)
T ss_dssp             E---ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC--CEEEEEC
T ss_pred             e---CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC--ceeeecc
Confidence            4   478889999999999999999999999999999987  4454443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=8.3e-41  Score=286.70  Aligned_cols=272  Identities=16%  Similarity=0.186  Sum_probs=210.2

Q ss_pred             EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEE
Q psy17342        115 FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLC  194 (401)
Q Consensus       115 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~  194 (401)
                      ..|...|++++|+|++ ++|++|+.|++|+|||+........    ..+.+|.++|++++|.+..++.+|++++.|++|+
T Consensus         6 ~~h~~~V~~~~~s~~g-~~las~s~D~~v~iw~~~~~~~~~~----~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~   80 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGETHKLI----DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM   80 (297)
T ss_dssp             CSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEBCSSCBCCC----EEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred             cCCcCceEEEEECCCC-CEEEEEeCCCEEEEEecCCCCcEEE----EEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence            3578999999999987 7899999999999999975432211    3457999999999993222478999999999999


Q ss_pred             EeeccCCCCCccccccccccccCCccceEEEEeccCC--CCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeec
Q psy17342        195 SWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQND--VNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSS  272 (401)
Q Consensus       195 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~  272 (401)
                      +||++... ......     ...|...|.+++|+ |+  +.+|++++.|+.|++||++.........+.+|...|.+++|
T Consensus        81 iWd~~~~~-~~~~~~-----~~~h~~~v~~v~~~-p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~  153 (297)
T 2pm7_B           81 IWKEENGR-WSQIAV-----HAVHSASVNSVQWA-PHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW  153 (297)
T ss_dssp             EEEBSSSC-BCCCEE-----ECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEE
T ss_pred             EEEcCCCc-eEEEEE-----eecCCCceeEEEeC-cCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEee
Confidence            99997521 111111     23478899999999 54  78999999999999999975432234567889999999999


Q ss_pred             CccCCCC-------CCCcEEEEEeCCCeEEEEEeeCCC----ceEEEeecCCceEEEEECCCC--CcEEEEEecCCEEEE
Q psy17342        273 HRAQGHI-------DFSHLYLTSSYDWSVKLWNIKENK----PVHSFNEFRDYVMDVQWSPIN--PALFATVEVAGRVDL  339 (401)
Q Consensus       273 ~~~~~~~-------~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~v~~v~~~~~~--~~~l~~~~~d~~i~i  339 (401)
                      +|.....       ..+++|++|+.|++|++||+++++    ....+.+|...|.+++|+|++  ..+|++++.|++|+|
T Consensus       154 ~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~i  233 (297)
T 2pm7_B          154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCII  233 (297)
T ss_dssp             CCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred             cCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEE
Confidence            9962100       003689999999999999999876    556788899999999999985  348999999999999


Q ss_pred             EeCCCCCCCcceEEe--ecCCCCeEEEEecCCCcEEEEEecCCcEEEEEecc-Cccceeeee
Q psy17342        340 WNLNLDTEVPATSAI--VEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE-VGIACLKFI  398 (401)
Q Consensus       340 wd~~~~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~-~~~~~l~~~  398 (401)
                      ||++...........  ..+...|.+++|+|+|++|++++.||.|++|+... +..+++..+
T Consensus       234 Wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~~~~~~  295 (297)
T 2pm7_B          234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEV  295 (297)
T ss_dssp             EEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEC---
T ss_pred             EEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEEecccc
Confidence            999875422111111  24567899999999999999999999999999873 344554443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.2e-41  Score=323.78  Aligned_cols=291  Identities=18%  Similarity=0.254  Sum_probs=234.3

Q ss_pred             ccccceEEEEecCCC-CCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC----ceEEEecCCCeeEEEEeCCCCceEEEE
Q psy17342         63 SKNRNVTYMDWSTQH-PELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT----PEFEFFCQSPVLSCCFAKFNPYLILGG  137 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~g  137 (401)
                      .|.+.|++++|+|++ ..|++++          .|++|++|++.+....    ......|...|.+++|+|++ .+|++|
T Consensus       380 ~H~~~V~~v~~~~~~~~~l~s~s----------~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~sg  448 (694)
T 3dm0_A          380 AHTDMVTAIATPIDNADIIVSAS----------RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-QFALSG  448 (694)
T ss_dssp             CCSSCEEEEECCTTCCSEEEEEE----------TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-SEEEEE
T ss_pred             cCCceeEEEEecCCCCCEEEEEe----------CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-CEEEEE
Confidence            588999999999976 5677888          8999999999764322    12334588999999999977 799999


Q ss_pred             ecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccC
Q psy17342        138 TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT  217 (401)
Q Consensus       138 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  217 (401)
                      +.||.|++||+.++...      ..+.+|...|.+++|  ++++.+|++++.|++|++||+...  ...... ..  ..+
T Consensus       449 s~Dg~v~vwd~~~~~~~------~~~~~h~~~v~~~~~--s~~~~~l~s~s~D~~i~iwd~~~~--~~~~~~-~~--~~~  515 (694)
T 3dm0_A          449 SWDGELRLWDLAAGVST------RRFVGHTKDVLSVAF--SLDNRQIVSASRDRTIKLWNTLGE--CKYTIS-EG--GEG  515 (694)
T ss_dssp             ETTSEEEEEETTTTEEE------EEEECCSSCEEEEEE--CTTSSCEEEEETTSCEEEECTTSC--EEEEEC-SS--TTS
T ss_pred             eCCCcEEEEECCCCcce------eEEeCCCCCEEEEEE--eCCCCEEEEEeCCCEEEEEECCCC--cceeec-cC--CCC
Confidence            99999999999887543      235789999999999  999999999999999999997531  111111 11  245


Q ss_pred             CccceEEEEeccCCC--CeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEE
Q psy17342        218 KNLAVLSLAFPQNDV--NNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVK  295 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~--~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~  295 (401)
                      |...|.+++|+ +++  ..+++++.|+.|++||++..  +....+.+|.+.|++++|+|+      +++|++|+.|+.|+
T Consensus       516 h~~~v~~~~~~-~~~~~~~l~s~s~d~~v~vwd~~~~--~~~~~~~~h~~~v~~v~~spd------g~~l~sg~~Dg~i~  586 (694)
T 3dm0_A          516 HRDWVSCVRFS-PNTLQPTIVSASWDKTVKVWNLSNC--KLRSTLAGHTGYVSTVAVSPD------GSLCASGGKDGVVL  586 (694)
T ss_dssp             CSSCEEEEEEC-SCSSSCEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTT------SSEEEEEETTSBCE
T ss_pred             CCCcEEEEEEe-CCCCcceEEEEeCCCeEEEEECCCC--cEEEEEcCCCCCEEEEEEeCC------CCEEEEEeCCCeEE
Confidence            88899999999 554  57999999999999999843  467788999999999999998      79999999999999


Q ss_pred             EEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee----------------cCCC
Q psy17342        296 LWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV----------------EGAP  359 (401)
Q Consensus       296 iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------------~~~~  359 (401)
                      +||+++++++..+.. ...|.+++|+|++. +++++ .++.|++||++++..+..+....                .+..
T Consensus       587 iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~-~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  663 (694)
T 3dm0_A          587 LWDLAEGKKLYSLEA-NSVIHALCFSPNRY-WLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVI  663 (694)
T ss_dssp             EEETTTTEEEECCBC-SSCEEEEEECSSSS-EEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCC
T ss_pred             EEECCCCceEEEecC-CCcEEEEEEcCCCc-EEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeE
Confidence            999999988877765 56799999999986 55555 57789999999876443322100                0112


Q ss_pred             CeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        360 ALSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       360 ~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      .+++++|+|+|++|++|+.||.|++|++..
T Consensus       664 ~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          664 YCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             EeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence            378999999999999999999999999853

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=9.4e-42  Score=301.65  Aligned_cols=294  Identities=12%  Similarity=0.146  Sum_probs=235.5

Q ss_pred             ccccceEEEEecCC----CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe----cCCCeeEEEEeCCCC---
Q psy17342         63 SKNRNVTYMDWSTQ----HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF----CQSPVLSCCFAKFNP---  131 (401)
Q Consensus        63 ~~~~~v~~~~~~~~----~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~---  131 (401)
                      .|.++|.+++|+|+    ...+++++          .++.|++||+.+++.+..+...    +...|++++|+|++.   
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~----------~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   85 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATV----------GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH   85 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEE----------ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCC
T ss_pred             CCCCceEEEEEecccCCCCceEEEEC----------CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCC
Confidence            57899999999984    33455555          4789999999977665444422    457899999999742   


Q ss_pred             ceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCCcccccc
Q psy17342        132 YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDL  210 (401)
Q Consensus       132 ~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~  210 (401)
                      .+|++|+.||.|++||+.+++..      ..+.+|...|.+++|  +| ++.+|++++.||.|++||++...   ....+
T Consensus        86 ~~l~~~~~dg~i~v~d~~~~~~~------~~~~~~~~~i~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~  154 (366)
T 3k26_A           86 PLLAVAGSRGIIRIINPITMQCI------KHYVGHGNAINELKF--HPRDPNLLLSVSKDHALRLWNIQTDT---LVAIF  154 (366)
T ss_dssp             EEEEEEETTCEEEEECTTTCCEE------EEEESCCSCEEEEEE--CSSCTTEEEEEETTSCEEEEETTTTE---EEEEE
T ss_pred             CEEEEecCCCEEEEEEchhceEe------eeecCCCCcEEEEEE--CCCCCCEEEEEeCCCeEEEEEeecCe---EEEEe
Confidence            58999999999999999887643      234689999999999  88 89999999999999999997532   12222


Q ss_pred             ccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCC--------------------------ceeeecCCC
Q psy17342        211 QYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAG--------------------------NVECYEGHE  264 (401)
Q Consensus       211 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~--------------------------~~~~~~~~~  264 (401)
                      ..  ...|...|.+++|+ +++.+|++++.|+.|++||++.....                          ......+|.
T Consensus       155 ~~--~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (366)
T 3k26_A          155 GG--VEGHRDEVLSADYD-LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHR  231 (366)
T ss_dssp             CS--TTSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCS
T ss_pred             cc--cccccCceeEEEEC-CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCc
Confidence            11  23588899999999 79999999999999999998743210                          112233499


Q ss_pred             CceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc--------------eEEEeecCCceEEEEECCC--CCcEE
Q psy17342        265 GPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP--------------VHSFNEFRDYVMDVQWSPI--NPALF  328 (401)
Q Consensus       265 ~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~v~~v~~~~~--~~~~l  328 (401)
                      ..|.+++|+        ++++++++.|+.|++||+++++.              +..+..|...|.+++|+|+  ++ +|
T Consensus       232 ~~v~~~~~~--------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l  302 (366)
T 3k26_A          232 NYVDCVRWL--------GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-ML  302 (366)
T ss_dssp             SCCCEEEEE--------TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EE
T ss_pred             ceEEEEEEc--------CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EE
Confidence            999999998        36999999999999999988754              7778889999999999999  86 89


Q ss_pred             EEEecCCEEEEEeCCCCCCCcceE-EeecC--CCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        329 ATVEVAGRVDLWNLNLDTEVPATS-AIVEG--APALSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       329 ~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~--~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      ++++.||.|++||+.+++...... ....|  ...|++++|+|++++|++++.||.|++||+.+
T Consensus       303 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          303 ALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             EEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            999999999999999887654222 22334  58899999999999999999999999999863

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=8.3e-41  Score=299.09  Aligned_cols=302  Identities=12%  Similarity=0.182  Sum_probs=240.6

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCC-----CCceEEEecCCCeeEEEEeCC---CC---
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK-----TTPEFEFFCQSPVLSCCFAKF---NP---  131 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~---~~---  131 (401)
                      .|.+.|++++|+|  ++|++++          .|+.|++||+.+++     ........|...|++++|+|+   ..   
T Consensus        14 ~h~~~i~~~~~~~--~~l~s~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~   81 (397)
T 1sq9_A           14 AHDADIFSVSACN--SFTVSCS----------GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL   81 (397)
T ss_dssp             CSSSCEEEEEECS--SEEEEEE----------TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred             hhhcCeEEEEecC--CeEEEEc----------CCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccc
Confidence            5889999999999  6899998          79999999999766     122233457899999999996   24   


Q ss_pred             ceEEEEecCCeEEEEECCCCCCCceeeccccccCC-----CCcEEEEEEeec----CCceE-EEEEeCCCcEEEeeccC-
Q psy17342        132 YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH-----THPVFCMSVIGT----QNAHN-LISISNDGRLCSWSLEM-  200 (401)
Q Consensus       132 ~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~----~~~~~-l~s~~~dg~i~~wd~~~-  200 (401)
                      .+|++++.||.|++|++.+....... ....+..|     ...|.+++|  +    +++.. |++++.||.|++||++. 
T Consensus        82 ~~l~s~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  158 (397)
T 1sq9_A           82 CLVATTSFSGDLLFYRITREDETKKV-IFEKLDLLDSDMKKHSFWALKW--GASNDRLLSHRLVATDVKGTTYIWKFHPF  158 (397)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCE-EEEEECCSCTTGGGSCEEEEEE--ECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred             cEEEEEcCCCCEEEEEccCCcccccc-cceeecccccccCCCcEEEEEE--eeccCCCCceEEEEEeCCCcEEEEeCCcc
Confidence            68889999999999999887641100 01224566     589999999  7    89999 99999999999999986 


Q ss_pred             -----CCCCcc----ccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC---C---CC
Q psy17342        201 -----LSSPQE----TRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG---H---EG  265 (401)
Q Consensus       201 -----~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~---~---~~  265 (401)
                           ......    .+.........|...|.+++|+ +++ .+++++.|+.|++||++.  ...+..+..   |   ..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~h~~~~~  234 (397)
T 1sq9_A          159 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISELST--LRPLYNFESQHSMINNSN  234 (397)
T ss_dssp             SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEETTT--TEEEEEEECCC---CCCC
T ss_pred             ccccccceeeccCcceeeeeeccccCCCCCceEEEEC-CCc-eEEEEeCCCcEEEEECCC--CceeEEEeccccccccCC
Confidence                 222110    1100000003377889999999 677 999999999999999984  346777888   8   99


Q ss_pred             ceeeeecCccCCCCCCCcEEEEEeCC---CeEEEEEeeCCCceEEEee-------------cCCceEEEEECCCCCcEEE
Q psy17342        266 PVVGLSSHRAQGHIDFSHLYLTSSYD---WSVKLWNIKENKPVHSFNE-------------FRDYVMDVQWSPINPALFA  329 (401)
Q Consensus       266 ~v~~i~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~-------------~~~~v~~v~~~~~~~~~l~  329 (401)
                      +|.+++|+|+      +.+|++++.|   +.|++||+++++++..+..             |...|.+++|+|+++ +|+
T Consensus       235 ~i~~i~~~~~------~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~  307 (397)
T 1sq9_A          235 SIRSVKFSPQ------GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLC  307 (397)
T ss_dssp             CEEEEEECSS------TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-EEE
T ss_pred             ccceEEECCC------CCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCC-EEE
Confidence            9999999998      7999999999   9999999999999999998             999999999999997 899


Q ss_pred             EEecCCEEEEEeCCCCCCCcceEEee---cC---------------CCCeEEEEecCCC----------cEEEEEecCCc
Q psy17342        330 TVEVAGRVDLWNLNLDTEVPATSAIV---EG---------------APALSRVTWTPNG----------TQLCVGDEKGA  381 (401)
Q Consensus       330 ~~~~d~~i~iwd~~~~~~~~~~~~~~---~~---------------~~~v~~~~~s~~g----------~~l~~~~~dg~  381 (401)
                      +++.||.|++||+++++.+..+....   .|               ...|++++|+|+|          ++|++++.||.
T Consensus       308 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~  387 (397)
T 1sq9_A          308 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRS  387 (397)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTE
T ss_pred             EEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCc
Confidence            99999999999999876554443100   34               7889999999998          79999999999


Q ss_pred             EEEEEeccC
Q psy17342        382 ITMFDVGEV  390 (401)
Q Consensus       382 v~iw~~~~~  390 (401)
                      |++|++.++
T Consensus       388 i~iw~~~~g  396 (397)
T 1sq9_A          388 IRWFREAGG  396 (397)
T ss_dssp             EEEEEEEC-
T ss_pred             EEEEEcCCC
Confidence            999999886

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-42  Score=312.85  Aligned_cols=307  Identities=11%  Similarity=0.047  Sum_probs=230.0

Q ss_pred             cccceEEEEecCCC---------CCeEEEEecc---------CCCCCCCCCcEEEEEeCcCCCCCce--E-EEecCCCee
Q psy17342         64 KNRNVTYMDWSTQH---------PELLLASYHR---------NKEAPNEPDGVCLIWNTKFKKTTPE--F-EFFCQSPVL  122 (401)
Q Consensus        64 ~~~~v~~~~~~~~~---------~~l~~~~~~~---------~~~~~~~~d~~v~iwd~~~~~~~~~--~-~~~~~~~v~  122 (401)
                      +.+.|.+|+|+|++         ++||+++...         ..+++++.|++|+|||+.+++....  . ..+|.+.|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            46789999999987         6788877432         1367788999999999987664322  1 234578899


Q ss_pred             EEEEeCCC-----CceEEEEecCCeEEEEECCCCCCCc-----eeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCc
Q psy17342        123 SCCFAKFN-----PYLILGGTYSGQIVLWDTRVQKKTP-----VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR  192 (401)
Q Consensus       123 ~~~~~~~~-----~~~l~~g~~dg~v~iw~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~  192 (401)
                      +++|+|++     ..+|++|+.||+|++||+.......     .......+.+|...|.+++|  +++ ..|++|+.||+
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~--s~~-~~lasgs~Dgt  288 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDF--LSP-TTVVCGFKNGF  288 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEE--SSS-SEEEEEETTSE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEe--cCC-CeEEEEeCCCE
Confidence            99999962     3699999999999999998764320     11111245789999999999  665 48999999999


Q ss_pred             EEEeeccCCCCCccccccccccccCCccceEEE--EeccCCC-CeEEEEcCCceEEEEeCCCCCCCceeeecCCCC--ce
Q psy17342        193 LCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL--AFPQNDV-NNFVVGCEDGNVYSACRHGNKAGNVECYEGHEG--PV  267 (401)
Q Consensus       193 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~--~v  267 (401)
                      |++||++....+..  .     +.+|...|+++  +|+ +++ .+|++|+.|+.|++||++..  +....+.+|..  .|
T Consensus       289 V~lWD~~~~~~~~~--~-----~~~H~~~V~sv~~~~s-~~g~~~laS~S~D~tvklWD~~~~--~~~~~~~~~~~~~~v  358 (524)
T 2j04_B          289 VAEFDLTDPEVPSF--Y-----DQVHDSYILSVSTAYS-DFEDTVVSTVAVDGYFYIFNPKDI--ATTKTTVSRFRGSNL  358 (524)
T ss_dssp             EEEEETTBCSSCSE--E-----EECSSSCEEEEEEECC-TTSCCEEEEEETTSEEEEECGGGH--HHHCEEEEECSCCSC
T ss_pred             EEEEECCCCCCceE--E-----eecccccEEEEEEEcC-CCCCeEEEEeccCCeEEEEECCCC--CcccccccccccCcc
Confidence            99999986322211  1     34488999999  455 676 89999999999999999743  34555666653  58


Q ss_pred             eeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC
Q psy17342        268 VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE  347 (401)
Q Consensus       268 ~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  347 (401)
                      .+++|+|+      +..+++++.|++|++||++++.++.++.+|...|++|+|+|+++ +|++|+.|++|++||+.....
T Consensus       359 ~~v~fsp~------~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~-~l~Sgs~Dgtv~lwd~~~~~~  431 (524)
T 2j04_B          359 VPVVYCPQ------IYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHP-MVLAGSADGSLIITNAARRLL  431 (524)
T ss_dssp             CCEEEETT------TTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCC-BCEEEETTTEEECCBSCSSTT
T ss_pred             cceEeCCC------cCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCC-eEEEEECCCEEEEEechHhhc
Confidence            89999998      68899999999999999999999899999999999999999998 789999999999998643211


Q ss_pred             Cc------------c-----------------------------eEEeecCCCCeEEEEecCCC---cEEEEEecCCcEE
Q psy17342        348 VP------------A-----------------------------TSAIVEGAPALSRVTWTPNG---TQLCVGDEKGAIT  383 (401)
Q Consensus       348 ~~------------~-----------------------------~~~~~~~~~~v~~~~~s~~g---~~l~~~~~dg~v~  383 (401)
                      ..            .                             .....+|...|.+++|+|++   ..||+|+.||.|+
T Consensus       432 ~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vr  511 (524)
T 2j04_B          432 HGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLT  511 (524)
T ss_dssp             TCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEE
T ss_pred             cccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEE
Confidence            00            0                             00112356789999999996   4999999999999


Q ss_pred             EEEeccC
Q psy17342        384 MFDVGEV  390 (401)
Q Consensus       384 iw~~~~~  390 (401)
                      ||++.-.
T Consensus       512 lw~l~~~  518 (524)
T 2j04_B          512 LEYLSLE  518 (524)
T ss_dssp             EEECSCC
T ss_pred             EEEcccc
Confidence            9998653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5.6e-42  Score=310.03  Aligned_cols=294  Identities=13%  Similarity=0.110  Sum_probs=225.5

Q ss_pred             ccccceEEEEecCC-CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE-ecCCCeeEEEEeCCCCceEEEEecC
Q psy17342         63 SKNRNVTYMDWSTQ-HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF-FCQSPVLSCCFAKFNPYLILGGTYS  140 (401)
Q Consensus        63 ~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~d  140 (401)
                      .|.+.|+|++|+|. +..||+|+          .||.|+|||+.+++......+ +|.+.|++|+|+|.+..+|++|+.|
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs----------~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D  186 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGS----------KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME  186 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEE----------TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEe----------CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC
Confidence            36678999999995 45677888          899999999987665544433 4889999999999666899999999


Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      |+|++||+++......    .....+...+.+++|  ++++.+|++|+.||.|++||++.  ..  ...     +.+|..
T Consensus       187 ~~v~iwd~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~l~~g~~dg~i~~wd~~~--~~--~~~-----~~~h~~  251 (435)
T 4e54_B          187 GTTRLQDFKGNILRVF----ASSDTINIWFCSLDV--SASSRMVVTGDNVGNVILLNMDG--KE--LWN-----LRMHKK  251 (435)
T ss_dssp             SCEEEEETTSCEEEEE----ECCSSCSCCCCCEEE--ETTTTEEEEECSSSBEEEEESSS--CB--CCC-----SBCCSS
T ss_pred             CEEEEeeccCCceeEE----eccCCCCccEEEEEE--CCCCCEEEEEeCCCcEeeeccCc--ce--eEE-----Eecccc
Confidence            9999999976543211    112345566788998  89999999999999999999863  11  122     345889


Q ss_pred             ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCC-ceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAG-NVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      .|.+++|+|....++++|+.|+.|++||++..... ......+|..+|++++|+|+      +.+|++++.|+.|+|||+
T Consensus       252 ~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spd------g~~l~s~~~D~~i~iwd~  325 (435)
T 4e54_B          252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPD------GARLLTTDQKSEIRVYSA  325 (435)
T ss_dssp             CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTT------SSEEEEEESSSCEEEEES
T ss_pred             eEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCC------CCeeEEEcCCCEEEEEEC
Confidence            99999999544557889999999999999754332 23344679999999999998      799999999999999999


Q ss_pred             eCCCceEEEeecCC------ceEEEEECCCCCcEEEEEe------------cCCEEEEEeCCCCCCCcceEEeecCCCCe
Q psy17342        300 KENKPVHSFNEFRD------YVMDVQWSPINPALFATVE------------VAGRVDLWNLNLDTEVPATSAIVEGAPAL  361 (401)
Q Consensus       300 ~~~~~~~~~~~~~~------~v~~v~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  361 (401)
                      ++++....+..|..      .+..+.|+|++. ++++++            .++.|++||..+++.+..+  ..+|...|
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l--~~~~~~~v  402 (435)
T 4e54_B          326 SQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYN-LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL--YDPESSGI  402 (435)
T ss_dssp             SSSSSEEEECCCCCCCCSSSCCCBCEECSSSS-CEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE--CCSSCCCC
T ss_pred             CCCccceEEecccccccccceeEEEEEcCCCC-EEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE--eCCCCCcE
Confidence            99888877766543      233456777765 344443            3467999999988754433  23566778


Q ss_pred             EEE-EecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        362 SRV-TWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       362 ~~~-~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      .++ +|+|+|++|++|+ |+.|+||++++++
T Consensus       403 ~s~~~fspdg~~lasg~-d~~i~iW~~~~gk  432 (435)
T 4e54_B          403 SSLNEFNPMGDTLASAM-GYHILIWSQQEAR  432 (435)
T ss_dssp             CCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred             EEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence            877 6999999999876 7889999999885

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.5e-41  Score=297.05  Aligned_cols=278  Identities=15%  Similarity=0.259  Sum_probs=227.5

Q ss_pred             CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCe
Q psy17342          1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL   80 (401)
Q Consensus         1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   80 (401)
                      |.|..-+.+|+||+.||.+++||........                        .+    ..|...|.+++|+|++..|
T Consensus        70 ~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~------------------------~~----~~~~~~v~~~~~sp~g~~l  121 (354)
T 2pbi_B           70 MDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH------------------------AV----TMPCTWVMACAYAPSGCAI  121 (354)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEE------------------------EE----ECSSSCCCEEEECTTSSEE
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCCcce------------------------EE----ecCCCCEEEEEECCCCCEE
Confidence            3566678899999999999999975443100                        00    1244679999999999999


Q ss_pred             EEEEeccCCCCCCCCCcEEEEEeCcCCC-----CCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCc
Q psy17342         81 LLASYHRNKEAPNEPDGVCLIWNTKFKK-----TTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTP  155 (401)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~  155 (401)
                      ++++          .|+.+++|++....     ........|...|.+++|+|++ ..|++|+.|++|++||+++++.. 
T Consensus       122 asg~----------~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~-  189 (354)
T 2pbi_B          122 ACGG----------LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLL-  189 (354)
T ss_dssp             EEES----------TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE-
T ss_pred             EEee----------CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEE-
Confidence            9998          79999999986432     1222334578999999999976 68889999999999999887643 


Q ss_pred             eeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeE
Q psy17342        156 VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNF  235 (401)
Q Consensus       156 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  235 (401)
                           ..+.+|...|.+++|.+++++..|++++.||.|++||++... ..  ..     +..|...|.+++|+ |++..|
T Consensus       190 -----~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~-~~--~~-----~~~h~~~v~~v~~~-p~~~~l  255 (354)
T 2pbi_B          190 -----QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-CV--QA-----FETHESDVNSVRYY-PSGDAF  255 (354)
T ss_dssp             -----EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC-EE--EE-----ECCCSSCEEEEEEC-TTSSEE
T ss_pred             -----EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc-EE--EE-----ecCCCCCeEEEEEe-CCCCEE
Confidence                 235789999999999555567899999999999999998632 21  11     34488899999999 799999


Q ss_pred             EEEcCCceEEEEeCCCCCCCceeeecC--CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCC
Q psy17342        236 VVGCEDGNVYSACRHGNKAGNVECYEG--HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRD  313 (401)
Q Consensus       236 ~~~~~d~~i~~~~~~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  313 (401)
                      ++|+.|+.|++||++...  .+..+..  +...+.+++|+|+      +.+|++|+.|+.|++||+.+++.+..+.+|..
T Consensus       256 ~s~s~D~~v~lwd~~~~~--~~~~~~~~~~~~~~~~~~~s~~------g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~  327 (354)
T 2pbi_B          256 ASGSDDATCRLYDLRADR--EVAIYSKESIIFGASSVDFSLS------GRLLFAGYNDYTINVWDVLKGSRVSILFGHEN  327 (354)
T ss_dssp             EEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTT------SSEEEEEETTSCEEEEETTTCSEEEEECCCSS
T ss_pred             EEEeCCCeEEEEECCCCc--EEEEEcCCCcccceeEEEEeCC------CCEEEEEECCCcEEEEECCCCceEEEEECCCC
Confidence            999999999999998543  3334432  3457899999998      79999999999999999999999999999999


Q ss_pred             ceEEEEECCCCCcEEEEEecCCEEEEEe
Q psy17342        314 YVMDVQWSPINPALFATVEVAGRVDLWN  341 (401)
Q Consensus       314 ~v~~v~~~~~~~~~l~~~~~d~~i~iwd  341 (401)
                      .|.+++|+|+++ +|++++.|+.|++|+
T Consensus       328 ~v~~l~~spdg~-~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          328 RVSTLRVSPDGT-AFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CEEEEEECTTSS-CEEEEETTSEEEEEC
T ss_pred             cEEEEEECCCCC-EEEEEcCCCCEEecC
Confidence            999999999997 799999999999996

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-42  Score=309.49  Aligned_cols=308  Identities=14%  Similarity=0.185  Sum_probs=244.9

Q ss_pred             cceEEEEecCCCC-CeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC-ceEEEecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342         66 RNVTYMDWSTQHP-ELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT-PEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQI  143 (401)
Q Consensus        66 ~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v  143 (401)
                      ..|.+++|+|+++ +|+++.+.....++.+.|+.|+|||+.++... ......|...|++++|+|++ .+|++|+.||.|
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v   91 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNN-KIIAGALDNGSL   91 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSS-SCEEEEESSSCE
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCC-CeEEEEccCCeE
Confidence            5699999999997 67777433333333358999999999876422 22334578899999999977 788999999999


Q ss_pred             EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCc---cccccccccccCCc
Q psy17342        144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQ---ETRDLQYNNKQTKN  219 (401)
Q Consensus       144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~---~~~~~~~~~~~~~~  219 (401)
                      ++|++........  ....+..|...|.+++|  +|+ +.+|++++.|+.|++||++......   ....+..  ...|.
T Consensus        92 ~vw~~~~~~~~~~--~~~~~~~h~~~v~~~~~--~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~  165 (416)
T 2pm9_A           92 ELYSTNEANNAIN--SMARFSNHSSSVKTVKF--NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ--SMSSV  165 (416)
T ss_dssp             EEECCSSTTSCCC--EEEECCCSSSCCCEEEE--CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC--SCCSS
T ss_pred             EEeeccccccccc--chhhccCCccceEEEEE--cCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc--ccCCC
Confidence            9999987321110  11335789999999999  887 8899999999999999998643110   1111111  34588


Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCC------CCceeeeecCccCCCCCCCcEEEEEeCCC-
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGH------EGPVVGLSSHRAQGHIDFSHLYLTSSYDW-  292 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~~~~~~l~s~~~d~-  292 (401)
                      ..|.+++|+|..+.++++++.|+.|++||++..  +.+..+..|      ...|.+++|+|+.     ..++++++.|+ 
T Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~d~~  238 (416)
T 2pm9_A          166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAK--KEVIHLSYTSPNSGIKQQLSVVEWHPKN-----STRVATATGSDN  238 (416)
T ss_dssp             CCCCEEEECSSCTTEEEEESSSSCEEEEETTTT--EEEEEECCCCCSSCCCCCEEEEEECSSC-----TTEEEEEECCSS
T ss_pred             CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC--CcceEEeccccccccCCceEEEEECCCC-----CCEEEEEECCCC
Confidence            899999999433889999999999999999853  355666655      7899999999984     47999999998 


Q ss_pred             --eEEEEEeeCC-CceEEEe-ecCCceEEEEECC-CCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEec
Q psy17342        293 --SVKLWNIKEN-KPVHSFN-EFRDYVMDVQWSP-INPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWT  367 (401)
Q Consensus       293 --~i~iwd~~~~-~~~~~~~-~~~~~v~~v~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s  367 (401)
                        .|++||++++ +++..+. .|...|.+++|+| ++. +|++++.|+.|++||+++++.+..+   ..|...|++++|+
T Consensus       239 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~~~~~~~~~---~~~~~~v~~~~~s  314 (416)
T 2pm9_A          239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLLWNPESAEQLSQF---PARGNWCFKTKFA  314 (416)
T ss_dssp             SCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEEECSSSCCEEEEE---ECSSSCCCCEEEC
T ss_pred             CceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEEeeCCCCccceee---cCCCCceEEEEEC
Confidence              9999999986 6778888 8999999999999 775 8999999999999999987655444   3677889999999


Q ss_pred             CCC-cEEEEEecCCcEEEEEeccCc
Q psy17342        368 PNG-TQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       368 ~~g-~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      |++ .+|++++.||.|++|++.+.+
T Consensus       315 ~~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          315 PEAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             TTCTTEEEECCSSSEEEEEESCCCC
T ss_pred             CCCCCEEEEEecCCcEEEEEccCCC
Confidence            999 899999999999999998864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.7e-41  Score=300.75  Aligned_cols=289  Identities=16%  Similarity=0.169  Sum_probs=231.3

Q ss_pred             ccccceEEEEecCCC-CCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE-ecCCCeeEEEEeCCCCceEEEEecC
Q psy17342         63 SKNRNVTYMDWSTQH-PELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF-FCQSPVLSCCFAKFNPYLILGGTYS  140 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~d  140 (401)
                      .|...|.+++|+|++ ++|++++          .|+.|+|||+.+++....+.. .|...|.+++|+|++..+|++++.|
T Consensus        71 ~h~~~v~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  140 (383)
T 3ei3_B           71 PFDRRVTSLEWHPTHPTTVAVGS----------KGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR  140 (383)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEE----------BTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred             CCCCCEEEEEECCCCCCEEEEEc----------CCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence            577999999999999 8888888          799999999997766554432 4789999999999555899999999


Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      +.|++||+.+......    .....|...|.+++|  ++++.+|++++.|+.|++||++.  .+  ...     ...|..
T Consensus       141 ~~i~iwd~~~~~~~~~----~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~i~d~~~--~~--~~~-----~~~h~~  205 (383)
T 3ei3_B          141 GATTLRDFSGSVIQVF----AKTDSWDYWYCCVDV--SVSRQMLATGDSTGRLLLLGLDG--HE--IFK-----EKLHKA  205 (383)
T ss_dssp             TEEEEEETTSCEEEEE----ECCCCSSCCEEEEEE--ETTTTEEEEEETTSEEEEEETTS--CE--EEE-----EECSSS
T ss_pred             CEEEEEECCCCceEEE----eccCCCCCCeEEEEE--CCCCCEEEEECCCCCEEEEECCC--CE--EEE-----eccCCC
Confidence            9999999986332111    122456689999999  89999999999999999999842  22  222     334888


Q ss_pred             ceEEEEeccCCCC-eEEEEcCCceEEEEeCCCCC--CCceeeecCCCCceeeeecCc-cCCCCCCCcEEEEEeCCCeEEE
Q psy17342        221 AVLSLAFPQNDVN-NFVVGCEDGNVYSACRHGNK--AGNVECYEGHEGPVVGLSSHR-AQGHIDFSHLYLTSSYDWSVKL  296 (401)
Q Consensus       221 ~v~~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~--~~~~~~~~~~~~~v~~i~~~~-~~~~~~~~~~l~s~~~d~~i~i  296 (401)
                      .|.+++|+ +++. ++++++.|+.|++||++...  ...+..+ +|...|.+++|+| +      +.+|++++.|+.|++
T Consensus       206 ~v~~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~------~~~l~~~~~d~~i~i  277 (383)
T 3ei3_B          206 KVTHAEFN-PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTD------STKLLTTDQRNEIRV  277 (383)
T ss_dssp             CEEEEEEC-SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTT------SCEEEEEESSSEEEE
T ss_pred             cEEEEEEC-CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCC------CCEEEEEcCCCcEEE
Confidence            99999999 6776 89999999999999998532  2344444 6999999999999 7      799999999999999


Q ss_pred             EEeeCCCceEEEeecC-----------------CceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCC
Q psy17342        297 WNIKENKPVHSFNEFR-----------------DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAP  359 (401)
Q Consensus       297 wd~~~~~~~~~~~~~~-----------------~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  359 (401)
                      ||+++++....+..|.                 ..+..++|+|+++ +  +++.|+.|++||+.+++.+..+.. ..+..
T Consensus       278 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~-~--s~s~d~~i~iwd~~~~~~~~~l~~-~~~~~  353 (383)
T 3ei3_B          278 YSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ-L--LLNDKRTIDIYDANSGGLVHQLRD-PNAAG  353 (383)
T ss_dssp             EETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT-T--CTTCCCCEEEEETTTCCEEEEECB-TTBCS
T ss_pred             EECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcc-c--ccCCCCeEEEEecCCCceeeeecC-CCCCc
Confidence            9999988888777653                 3445577777775 3  777899999999998876544421 11356


Q ss_pred             CeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        360 ALSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       360 ~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      .+..++|+|++++|++|+ ||.|++||+++
T Consensus       354 ~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          354 IISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             eEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            677789999999999997 99999999975

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.1e-41  Score=302.26  Aligned_cols=327  Identities=12%  Similarity=0.164  Sum_probs=250.2

Q ss_pred             chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeE
Q psy17342          2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELL   81 (401)
Q Consensus         2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   81 (401)
                      .|...+.++++|+.||.+++||.........+                             .....+....|+|++++|+
T Consensus        63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~l~  113 (420)
T 3vl1_A           63 TFEKVGSHLYKARLDGHDFLFNTIIRDGSKML-----------------------------KRADYTAVDTAKLQMRRFI  113 (420)
T ss_dssp             EEEEEETTEEEEEETTEEEEEECCSEETTTTS-----------------------------CSCCEEEEEEECSSSCEEE
T ss_pred             eeeecCCeEEEEEcCCcEEEEEecccceeeEE-----------------------------ecCCceEEEEEecCCCEEE
Confidence            34556788999999999999997655422111                             0113355567899999999


Q ss_pred             EEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccc
Q psy17342         82 LASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPL  161 (401)
Q Consensus        82 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~  161 (401)
                      +++          .|+.|++||+.+++... ....|...|++++|+|++ .+|++|+.|+.|++||+.+++..      .
T Consensus       114 ~~~----------~dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~------~  175 (420)
T 3vl1_A          114 LGT----------TEGDIKVLDSNFNLQRE-IDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNP------R  175 (420)
T ss_dssp             EEE----------TTSCEEEECTTSCEEEE-ETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCC------E
T ss_pred             EEE----------CCCCEEEEeCCCcceee-ecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCc------e
Confidence            999          79999999998654332 112578999999999977 79999999999999999987654      2


Q ss_pred             cccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccc-----------------cccCCccceEE
Q psy17342        162 SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYN-----------------NKQTKNLAVLS  224 (401)
Q Consensus       162 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~-----------------~~~~~~~~v~~  224 (401)
                      .+.+|...|.+++|  +|++.+|++++.|+.|++||++... ....+.....                 ....+...+.+
T Consensus       176 ~~~~h~~~v~~~~~--~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~  252 (420)
T 3vl1_A          176 TLIGHRATVTDIAI--IDRGRNVLSASLDGTIRLWECGTGT-TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN  252 (420)
T ss_dssp             EEECCSSCEEEEEE--ETTTTEEEEEETTSCEEEEETTTTE-EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCT
T ss_pred             EEcCCCCcEEEEEE--cCCCCEEEEEcCCCcEEEeECCCCc-eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccc
Confidence            34689999999999  8999999999999999999998632 1111111000                 00012345555


Q ss_pred             EEeccCCCCeEEEEcCCceEEEEeCCCCCCCceee-ecCCCCceeeeecCccCCCCCCCc-EEEEEeCCCeEEEEEeeCC
Q psy17342        225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVEC-YEGHEGPVVGLSSHRAQGHIDFSH-LYLTSSYDWSVKLWNIKEN  302 (401)
Q Consensus       225 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~  302 (401)
                      ++|+ ++++++++|+.||.|++||++...  .... ...|...|.+++|+|+      +. +|++++.|+.|++||++++
T Consensus       253 ~~~s-~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~------~~~~l~~g~~dg~i~vwd~~~~  323 (420)
T 3vl1_A          253 LEFG-TYGKYVIAGHVSGVITVHNVFSKE--QTIQLPSKFTCSCNSLTVDGN------NANYIYAGYENGMLAQWDLRSP  323 (420)
T ss_dssp             TCSS-CTTEEEEEEETTSCEEEEETTTCC--EEEEECCTTSSCEEEEEECSS------CTTEEEEEETTSEEEEEETTCT
T ss_pred             eEEc-CCCCEEEEEcCCCeEEEEECCCCc--eeEEcccccCCCceeEEEeCC------CCCEEEEEeCCCeEEEEEcCCC
Confidence            6667 789999999999999999997543  3333 3468899999999998      56 9999999999999999987


Q ss_pred             C-ceEEEee-cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCc------ceEEeecCCCCeEEEEecCCCc---
Q psy17342        303 K-PVHSFNE-FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVP------ATSAIVEGAPALSRVTWTPNGT---  371 (401)
Q Consensus       303 ~-~~~~~~~-~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------~~~~~~~~~~~v~~~~~s~~g~---  371 (401)
                      + ++..+.. |...|.++.+. ++. +|++++.|+.|++||+.......      .......+...|.+++|+|+++   
T Consensus       324 ~~~~~~~~~~~~~~v~~~~~~-~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g  401 (420)
T 3vl1_A          324 ECPVGEFLINEGTPINNVYFA-AGA-LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNG  401 (420)
T ss_dssp             TSCSEEEEESTTSCEEEEEEE-TTE-EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSC
T ss_pred             cCchhhhhccCCCCceEEEeC-CCC-EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcc
Confidence            4 4777877 67778888665 564 89999999999999998743321      1222346678899999999999   


Q ss_pred             EEEEEecCCcEEEEEecc
Q psy17342        372 QLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       372 ~l~~~~~dg~v~iw~~~~  389 (401)
                      .|++.+.+|.+.+|++++
T Consensus       402 ~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          402 EVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             EEEEEETTTEEEEEESCC
T ss_pred             eEEEEcCCceEEEEeccC
Confidence            777888899999999865

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-40  Score=292.85  Aligned_cols=295  Identities=15%  Similarity=0.192  Sum_probs=246.3

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      .|.+.|++++|+|++++|++++          .|+.|++||+.+++....+ ..|...|.+++|+|++ .+|++++.||.
T Consensus        30 ~h~~~v~~~~~s~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~-~~l~s~~~dg~   97 (369)
T 3zwl_B           30 GHERPLTQVKYNKEGDLLFSCS----------KDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDCFT-KYCVTGSADYS   97 (369)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEE----------SSSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTS-SEEEEEETTTE
T ss_pred             EeeceEEEEEEcCCCCEEEEEe----------CCCEEEEEeCCCchhhhhh-hhcCCcEEEEEEcCCC-CEEEEEeCCCe
Confidence            5779999999999999999999          7999999999877655433 3478899999999976 78999999999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC-----CcEEEeeccCCCCCcccccccc---cc
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND-----GRLCSWSLEMLSSPQETRDLQY---NN  214 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~---~~  214 (401)
                      |++||+.+++....       ..|...|.+++|  ++++.++++++.+     +.|.+||+..............   ..
T Consensus        98 i~iwd~~~~~~~~~-------~~~~~~v~~~~~--~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~  168 (369)
T 3zwl_B           98 IKLWDVSNGQCVAT-------WKSPVPVKRVEF--SPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHK  168 (369)
T ss_dssp             EEEEETTTCCEEEE-------EECSSCEEEEEE--CTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEE
T ss_pred             EEEEECCCCcEEEE-------eecCCCeEEEEE--ccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeee
Confidence            99999988764322       237889999999  9999999999999     9999999976432221111100   00


Q ss_pred             ccCCcc--ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC
Q psy17342        215 KQTKNL--AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW  292 (401)
Q Consensus       215 ~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~  292 (401)
                      ...+..  .+.+++|+ ++++.+++++.||.|++||++.. ...+..+..|...|.+++|+|+      +.+|++++.|+
T Consensus       169 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~  240 (369)
T 3zwl_B          169 IITHEGLDAATVAGWS-TKGKYIIAGHKDGKISKYDVSNN-YEYVDSIDLHEKSISDMQFSPD------LTYFITSSRDT  240 (369)
T ss_dssp             EECCTTCCCEEEEEEC-GGGCEEEEEETTSEEEEEETTTT-TEEEEEEECCSSCEEEEEECTT------SSEEEEEETTS
T ss_pred             ccCCcCccceeEEEEc-CCCCEEEEEcCCCEEEEEECCCC-cEeEEEEecCCCceeEEEECCC------CCEEEEecCCc
Confidence            122333  89999999 79999999999999999999752 3467788889999999999998      79999999999


Q ss_pred             eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCC--------------EEEEEeCCCCCCCcceEEeecCC
Q psy17342        293 SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAG--------------RVDLWNLNLDTEVPATSAIVEGA  358 (401)
Q Consensus       293 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~--------------~i~iwd~~~~~~~~~~~~~~~~~  358 (401)
                      .|++||+++++.+..+. +...+.+++|+|+++ ++++++.++              .+++||+.+++....+   ..|.
T Consensus       241 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~~~  315 (369)
T 3zwl_B          241 NSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKE-FIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV---QGHF  315 (369)
T ss_dssp             EEEEEETTTCCEEEEEE-CSSCEEEEEECSSSS-EEEEEECCC-------------CEEEEEETTTCCEEEEE---ECCS
T ss_pred             eEEEEECCCCceeeeec-CCCCceeEEecCCCc-eEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe---eccc
Confidence            99999999999888887 578899999999998 677887777              8999999988755444   4678


Q ss_pred             CCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        359 PALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       359 ~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      ..|++++|+|++++|++++.||.|++|+++++.
T Consensus       316 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          316 GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred             CcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence            899999999999999999999999999998763

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-41  Score=328.81  Aligned_cols=360  Identities=12%  Similarity=0.097  Sum_probs=253.7

Q ss_pred             hccccccccccccccccccCCCCCCCCcc-----ccccccCCC----CCCCCCceeeeeeec---cccccccceEEEEec
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQ-----DLQFDMTGD----EKSSTKLSFCRQFFD---EKWSKNRNVTYMDWS   74 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~   74 (401)
                      +..+|+|+.||.|+||+......+.....     ...|.. +.    ......+.+|.....   ..+.|...|++++|+
T Consensus        29 g~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~s  107 (902)
T 2oaj_A           29 QNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTD  107 (902)
T ss_dssp             TTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECC
T ss_pred             CCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEEC
Confidence            46788888888888888766544322221     122333 22    112334444432111   112356789999999


Q ss_pred             CCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-----------EecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342         75 TQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-----------FFCQSPVLSCCFAKFNPYLILGGTYSGQI  143 (401)
Q Consensus        75 ~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~l~~g~~dg~v  143 (401)
                      |++++|++++          .||.|++||+++++.. .+.           ..|.++|++++|+|++..++++|+.||.|
T Consensus       108 p~g~~l~sgs----------~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v  176 (902)
T 2oaj_A          108 ASLDWMLIGL----------QNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL  176 (902)
T ss_dssp             TTCSEEEEEE----------TTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE
T ss_pred             CCCCEEEEEc----------CCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE
Confidence            9999999999          8999999999876542 111           23678999999999765789999999999


Q ss_pred             EEEECCCCCCCceeecc------------ccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCc------
Q psy17342        144 VLWDTRVQKKTPVHRTP------------LSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQ------  205 (401)
Q Consensus       144 ~iw~~~~~~~~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~------  205 (401)
                       +||+++.+........            .....|...|.+++|  +|++.+|++++.||+|++||++......      
T Consensus       177 -lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f--spdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~  253 (902)
T 2oaj_A          177 -TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY--HPNSLHIITIHEDNSLVFWDANSGHMIMARTVFE  253 (902)
T ss_dssp             -EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE--CTTSSEEEEEETTCCEEEEETTTCCEEEEECSSC
T ss_pred             -EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE--cCCCCEEEEEECCCeEEEEECCCCcEEEEEeecc
Confidence             9999887543222110            011345688999999  9999999999999999999985421000      


Q ss_pred             -----------------c--ccc--c----c-----------cc------c-----------------------------
Q psy17342        206 -----------------E--TRD--L----Q-----------YN------N-----------------------------  214 (401)
Q Consensus       206 -----------------~--~~~--~----~-----------~~------~-----------------------------  214 (401)
                                       .  ...  .    .           ..      .                             
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~  333 (902)
T 2oaj_A          254 TEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQ  333 (902)
T ss_dssp             SCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSE
T ss_pred             cccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccc
Confidence                             0  000  0    0           00      0                             


Q ss_pred             ---------------------------------------------------------------ccCCccceEEEE-----
Q psy17342        215 ---------------------------------------------------------------KQTKNLAVLSLA-----  226 (401)
Q Consensus       215 ---------------------------------------------------------------~~~~~~~v~~~~-----  226 (401)
                                                                                     ...|...|++++     
T Consensus       334 ~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~  413 (902)
T 2oaj_A          334 MKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVP  413 (902)
T ss_dssp             EEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEE
T ss_pred             eEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcC
Confidence                                                                           000001222222     


Q ss_pred             -----------------------------eccCCCCeEEEEcCCceEEEEeCCCCCCCceeee----c-----CCCCcee
Q psy17342        227 -----------------------------FPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY----E-----GHEGPVV  268 (401)
Q Consensus       227 -----------------------------~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~----~-----~~~~~v~  268 (401)
                                                   |+ ++++.|++|+.|+.|++||+..........+    .     +|...|.
T Consensus       414 ~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~s-pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~  492 (902)
T 2oaj_A          414 NKLWLGALSAAQNKDYLLKGGVRTKRQKLPA-EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVD  492 (902)
T ss_dssp             HHHHHHHHHTTBCCCCSCCCSBCCCCCCCCC-SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEE
T ss_pred             HHHHHHHHhcccCCCCcccCCcCCCCccccc-ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCcee
Confidence                                         23 4677899999999999999875432111111    1     7899999


Q ss_pred             eeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC---------------------------------------------
Q psy17342        269 GLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK---------------------------------------------  303 (401)
Q Consensus       269 ~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---------------------------------------------  303 (401)
                      +++|+|+      +++||+|+.|++|+|||+.+++                                             
T Consensus       493 svafspd------g~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  566 (902)
T 2oaj_A          493 KISFAAE------TLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFM  566 (902)
T ss_dssp             EEEEETT------TTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEE
T ss_pred             EEEecCC------CCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccc
Confidence            9999999      7999999999999999998763                                             


Q ss_pred             ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceE--Eee-cCCCCeEEEEec-----CCC---cE
Q psy17342        304 PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATS--AIV-EGAPALSRVTWT-----PNG---TQ  372 (401)
Q Consensus       304 ~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~-~~~~~v~~~~~s-----~~g---~~  372 (401)
                      ++..+.+|.+.|++++|+|+|  +||+|+.|++|+|||+++...+....  ... +|...|++++|+     |||   ++
T Consensus       567 ~~~~l~~h~~~V~svafSpdG--~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~  644 (902)
T 2oaj_A          567 PSTAVHANKGKTSAINNSNIG--FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSIL  644 (902)
T ss_dssp             EEEEECCCSCSEEEEEECBTS--EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEE
T ss_pred             eeEEEEcCCCcEEEEEecCCc--EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceE
Confidence            366778899999999999999  79999999999999987654322111  111 677889999999     885   89


Q ss_pred             EEEEecCCcEEEEEe---ccC
Q psy17342        373 LCVGDEKGAITMFDV---GEV  390 (401)
Q Consensus       373 l~~~~~dg~v~iw~~---~~~  390 (401)
                      |++|+.|++|++||+   .++
T Consensus       645 l~sgs~D~tv~~wd~~p~~~g  665 (902)
T 2oaj_A          645 MVCGTDMGEVITYKILPASGG  665 (902)
T ss_dssp             EEEEETTSEEEEEEEEECGGG
T ss_pred             EEEEecCCcEEEEEEecCCCC
Confidence            999999999999999   665

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-40  Score=284.47  Aligned_cols=283  Identities=16%  Similarity=0.201  Sum_probs=237.4

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      .|.+.|.+++| |++++|++++          .||.|++||+.+++... ....|...|.+++|+|++ .+|++|+.||.
T Consensus        16 ~h~~~v~~~~~-~~~~~l~s~~----------~dg~v~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~   82 (313)
T 3odt_A           16 GHDQDVRDVVA-VDDSKVASVS----------RDGTVRLWSKDDQWLGT-VVYTGQGFLNSVCYDSEK-ELLLFGGKDTM   82 (313)
T ss_dssp             CCSSCEEEEEE-EETTEEEEEE----------TTSEEEEEEESSSEEEE-EEEECSSCEEEEEEETTT-TEEEEEETTSC
T ss_pred             CCCCCcEEEEe-cCCCEEEEEE----------cCCcEEEEECCCCEEEE-EeecCCccEEEEEECCCC-CEEEEecCCCe
Confidence            57799999999 9999999999          89999999998655443 344568999999999976 78999999999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      |++|++........   ...+..|...|.+++|    ++..+++++.||.|++||..     .....     ...|...+
T Consensus        83 i~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d~~-----~~~~~-----~~~~~~~v  145 (313)
T 3odt_A           83 INGVPLFATSGEDP---LYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWKEG-----SLVYN-----LQAHNASV  145 (313)
T ss_dssp             EEEEETTCCTTSCC----CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETT-----EEEEE-----EECCSSCE
T ss_pred             EEEEEeeecCCCCc---ccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEcCC-----cEEEe-----cccCCCce
Confidence            99999987543221   1235789999999998    46799999999999999922     11222     23478899


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC-CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG-HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE  301 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  301 (401)
                      .++++.|++++.+++++.|+.|++||..    .....+.. |...|.+++|+|+      +. +++++.|+.|++||+++
T Consensus       146 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~i~~~~~~~~------~~-~~~~~~dg~i~i~d~~~  214 (313)
T 3odt_A          146 WDAKVVSFSENKFLTASADKTIKLWQND----KVIKTFSGIHNDVVRHLAVVDD------GH-FISCSNDGLIKLVDMHT  214 (313)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEETT----EEEEEECSSCSSCEEEEEEEET------TE-EEEEETTSEEEEEETTT
T ss_pred             eEEEEccCCCCEEEEEECCCCEEEEecC----ceEEEEeccCcccEEEEEEcCC------Ce-EEEccCCCeEEEEECCc
Confidence            9999996699999999999999999943    24556666 8999999999998      45 99999999999999999


Q ss_pred             CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCc
Q psy17342        302 NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGA  381 (401)
Q Consensus       302 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  381 (401)
                      ++++..+..|...|.+++|+|++.  +++++.||.|++||+++++....+   ..+...|.+++|+|+++ +++++.||.
T Consensus       215 ~~~~~~~~~~~~~i~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~-~~~~~~dg~  288 (313)
T 3odt_A          215 GDVLRTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKENGSLKQVI---TLPAISIWSVDCMSNGD-IIVGSSDNL  288 (313)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSC--EEEEETTSEEEEECTTTCCEEEEE---ECSSSCEEEEEECTTSC-EEEEETTSC
T ss_pred             hhhhhhhhcCCceEEEEEEecCCC--EEEEecCCEEEEEECCCCceeEEE---eccCceEEEEEEccCCC-EEEEeCCCc
Confidence            999999999999999999999983  788999999999999988755544   35677899999999998 667999999


Q ss_pred             EEEEEeccCcc
Q psy17342        382 ITMFDVGEVGI  392 (401)
Q Consensus       382 v~iw~~~~~~~  392 (401)
                      |++|++++++.
T Consensus       289 i~iw~~~~~~~  299 (313)
T 3odt_A          289 VRIFSQEKSRW  299 (313)
T ss_dssp             EEEEESCGGGC
T ss_pred             EEEEeCCCCce
Confidence            99999998753

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.8e-42  Score=305.43  Aligned_cols=288  Identities=17%  Similarity=0.212  Sum_probs=231.8

Q ss_pred             CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCe
Q psy17342          1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL   80 (401)
Q Consensus         1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   80 (401)
                      |+|..-+.+++||+.||.++|||......+.                        .+    ..|...|.+++|+|++++|
T Consensus        72 ~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~------------------------~~----~~h~~~v~~~~~s~~g~~l  123 (380)
T 3iz6_a           72 LDWTPEKNWIVSASQDGRLIVWNALTSQKTH------------------------AI----KLHCPWVMECAFAPNGQSV  123 (380)
T ss_dssp             EEECTTSSCEEEEETTSEEEEEETTTTEEEE------------------------EE----ECCCTTCCCCEECTTSSEE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCccce------------------------EE----ecCCCCEEEEEECCCCCEE
Confidence            3566678899999999999999976544110                        00    1355789999999999999


Q ss_pred             EEEEeccCCCCCCCCCcEEEEEeCcCCC------CCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCC
Q psy17342         81 LLASYHRNKEAPNEPDGVCLIWNTKFKK------TTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKT  154 (401)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~  154 (401)
                      ++++          .|+.+++|++.+..      .......+|.+.|.++.|+|++...|++|+.|++|++||+.+++..
T Consensus       124 as~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~  193 (380)
T 3iz6_a          124 ACGG----------LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI  193 (380)
T ss_dssp             EECC----------SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE
T ss_pred             EEee----------CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE
Confidence            9999          79999999987522      1222334678899999999987778999999999999999987754


Q ss_pred             ceeeccccccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCC
Q psy17342        155 PVHRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVN  233 (401)
Q Consensus       155 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  233 (401)
                      ..... ....+|...|.+++|  ++ ++.+|++|+.|++|++||++........       +.+|...|.+++|+ |++.
T Consensus       194 ~~~~~-~~~~~h~~~v~~~~~--~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~-------~~~h~~~v~~v~~~-p~~~  262 (380)
T 3iz6_a          194 SIFGS-EFPSGHTADVLSLSI--NSLNANMFISGSCDTTVRLWDLRITSRAVRT-------YHGHEGDINSVKFF-PDGQ  262 (380)
T ss_dssp             EEECC-CSSSSCCSCEEEEEE--CSSSCCEEEEEETTSCEEEEETTTTCCCCEE-------ECCCSSCCCEEEEC-TTSS
T ss_pred             EEeec-ccCCCCccCeEEEEe--ecCCCCEEEEEECCCeEEEEECCCCCcceEE-------ECCcCCCeEEEEEe-cCCC
Confidence            33221 112579999999999  54 7889999999999999999743322221       34588999999999 8999


Q ss_pred             eEEEEcCCceEEEEeCCCCCCCceeeecCC-------CCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceE
Q psy17342        234 NFVVGCEDGNVYSACRHGNKAGNVECYEGH-------EGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVH  306 (401)
Q Consensus       234 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  306 (401)
                      +|++|+.|+.|++||++..  ..+..+..+       ...|++++|+|+      +.+|++|+.||.|++||+..++.+.
T Consensus       263 ~l~s~s~D~~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~~g~~dg~i~vwd~~~~~~~~  334 (380)
T 3iz6_a          263 RFGTGSDDGTCRLFDMRTG--HQLQVYNREPDRNDNELPIVTSVAFSIS------GRLLFAGYSNGDCYVWDTLLAEMVL  334 (380)
T ss_dssp             EEEEECSSSCEEEEETTTT--EEEEEECCCCSSSCCSSCSCSEEEECSS------SSEEEEECTTSCEEEEETTTCCEEE
T ss_pred             eEEEEcCCCeEEEEECCCC--cEEEEecccccccccccCceEEEEECCC------CCEEEEEECCCCEEEEECCCCceEE
Confidence            9999999999999999843  344444433       234899999999      7999999999999999999888887


Q ss_pred             EE----eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342        307 SF----NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT  346 (401)
Q Consensus       307 ~~----~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~  346 (401)
                      .+    .+|.+.|.+++|+|++. +|++|+.|++|++|++...+
T Consensus       335 ~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          335 NLGTLQNSHEGRISCLGLSSDGS-ALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EECCSCSSCCCCCCEEEECSSSS-EEEEECTTSCEEEEECCSSS
T ss_pred             EEecccCCCCCceEEEEECCCCC-EEEEeeCCCCEEEEecCCCc
Confidence            77    57999999999999997 89999999999999998654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-40  Score=296.56  Aligned_cols=284  Identities=18%  Similarity=0.223  Sum_probs=235.8

Q ss_pred             ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEE
Q psy17342         67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLW  146 (401)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw  146 (401)
                      .+.+++|++  ..+++++          .|+.|++||+.+++........|...|++++|+|++ .+|++|+.||.|++|
T Consensus        95 ~~~~~~~s~--~~l~~~~----------~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw  161 (401)
T 4aez_A           95 YLNLLDWSN--LNVVAVA----------LERNVYVWNADSGSVSALAETDESTYVASVKWSHDG-SFLSVGLGNGLVDIY  161 (401)
T ss_dssp             TCBCEEECT--TSEEEEE----------ETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTS-SEEEEEETTSCEEEE
T ss_pred             eEEEEeecC--CCEEEEE----------CCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCC-CEEEEECCCCeEEEE
Confidence            355677775  4677777          699999999998877766666678999999999976 789999999999999


Q ss_pred             ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEE
Q psy17342        147 DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLA  226 (401)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  226 (401)
                      |+.+++..      ..+..|...|.+++|    ++..+++++.||.|++||++.......  .     ...|...|.+++
T Consensus       162 d~~~~~~~------~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~--~-----~~~~~~~v~~~~  224 (401)
T 4aez_A          162 DVESQTKL------RTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQIG--T-----LQGHSSEVCGLA  224 (401)
T ss_dssp             ETTTCCEE------EEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEE--E-----EECCSSCEEEEE
T ss_pred             ECcCCeEE------EEecCCCCceEEEEE----CCCEEEEEcCCCCEEEEecccCcceee--E-----EcCCCCCeeEEE
Confidence            99887643      234689999999999    456999999999999999985332222  1     344888999999


Q ss_pred             eccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe--CCCeEEEEEeeCCCc
Q psy17342        227 FPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS--YDWSVKLWNIKENKP  304 (401)
Q Consensus       227 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~  304 (401)
                      |+ +++.+|++|+.|+.|++||++.  ...+..+..|...|.+++|+|+.     ..++++++  .|+.|++||++++++
T Consensus       225 ~~-~~~~~l~s~~~d~~v~iwd~~~--~~~~~~~~~~~~~v~~~~~~p~~-----~~ll~~~~gs~d~~i~i~d~~~~~~  296 (401)
T 4aez_A          225 WR-SDGLQLASGGNDNVVQIWDARS--SIPKFTKTNHNAAVKAVAWCPWQ-----SNLLATGGGTMDKQIHFWNAATGAR  296 (401)
T ss_dssp             EC-TTSSEEEEEETTSCEEEEETTC--SSEEEEECCCSSCCCEEEECTTS-----TTEEEEECCTTTCEEEEEETTTCCE
T ss_pred             Ec-CCCCEEEEEeCCCeEEEccCCC--CCccEEecCCcceEEEEEECCCC-----CCEEEEecCCCCCEEEEEECCCCCE
Confidence            99 7999999999999999999984  44677888999999999999974     57788876  799999999999999


Q ss_pred             eEEEeecCCceEEEEECCCCCcEEEE--EecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcE
Q psy17342        305 VHSFNEFRDYVMDVQWSPINPALFAT--VEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAI  382 (401)
Q Consensus       305 ~~~~~~~~~~v~~v~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  382 (401)
                      +..+. +...|.+++|+|+++ ++++  |+.||.|++||+.++....... ...|...|.+++|+|+|++|++++.||.|
T Consensus       297 ~~~~~-~~~~v~~~~~s~~~~-~l~~~~g~~dg~i~v~~~~~~~~~~~~~-~~~h~~~v~~~~~s~dg~~l~s~~~dg~i  373 (401)
T 4aez_A          297 VNTVD-AGSQVTSLIWSPHSK-EIMSTHGFPDNNLSIWSYSSSGLTKQVD-IPAHDTRVLYSALSPDGRILSTAASDENL  373 (401)
T ss_dssp             EEEEE-CSSCEEEEEECSSSS-EEEEEECTTTCEEEEEEEETTEEEEEEE-EECCSSCCCEEEECTTSSEEEEECTTSEE
T ss_pred             EEEEe-CCCcEEEEEECCCCC-eEEEEeecCCCcEEEEecCCccceeEEE-ecCCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence            88886 467899999999998 5666  4489999999998865444332 24678899999999999999999999999


Q ss_pred             EEEEeccCc
Q psy17342        383 TMFDVGEVG  391 (401)
Q Consensus       383 ~iw~~~~~~  391 (401)
                      ++|++.+++
T Consensus       374 ~iw~~~~~~  382 (401)
T 4aez_A          374 KFWRVYDGD  382 (401)
T ss_dssp             EEEECCC--
T ss_pred             EEEECCCCc
Confidence            999999874

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.6e-39  Score=292.63  Aligned_cols=283  Identities=18%  Similarity=0.281  Sum_probs=233.2

Q ss_pred             eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-cCCCeeEEEEeCCCCceEEEEecCCeEEEE
Q psy17342         68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-CQSPVLSCCFAKFNPYLILGGTYSGQIVLW  146 (401)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw  146 (401)
                      ++.|+||+++ .|++|.           |++|+|||..+++....+..+ |...|++|+|+|++ .+|++|+.||.|++|
T Consensus       108 ~~~l~wS~~n-~lAvgl-----------d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iW  174 (420)
T 4gga_A          108 LNLVDWSSGN-VLAVAL-----------DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLW  174 (420)
T ss_dssp             CBCEEECTTS-EEEEEE-----------TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEE
T ss_pred             ceeEEECCCC-EEEEEe-----------CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEE
Confidence            5679999864 555555           999999999998877666554 56789999999987 799999999999999


Q ss_pred             ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEE
Q psy17342        147 DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLA  226 (401)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  226 (401)
                      |+.+++..      ..+.+|...+.++++    ++..+++++.|+.+++||.........  .     +.+|...+..+.
T Consensus       175 d~~~~~~~------~~~~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~~--~-----~~~h~~~~~~~~  237 (420)
T 4gga_A          175 DVQQQKRL------RNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVA--T-----LSGHSQEVCGLR  237 (420)
T ss_dssp             ETTTTEEE------EEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEE--E-----EECCSSCEEEEE
T ss_pred             EcCCCcEE------EEEeCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceeeE--E-----ecccccceeeee
Confidence            99987643      235789999999987    567999999999999999875322221  1     345888999999


Q ss_pred             eccCCCCeEEEEcCCceEEEEeCCCCCC--CceeeecCCCCceeeeecCccCCCCCCCcEEEEE--eCCCeEEEEEeeCC
Q psy17342        227 FPQNDVNNFVVGCEDGNVYSACRHGNKA--GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS--SYDWSVKLWNIKEN  302 (401)
Q Consensus       227 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~--~~d~~i~iwd~~~~  302 (401)
                      ++ +++.++++++.|+.+++|+......  ..+.....|...|.+++|+|..     ..+++++  +.|++|++||+.++
T Consensus       238 ~~-~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~-----~~~la~~~gs~D~~I~iwd~~t~  311 (420)
T 4gga_A          238 WA-PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ-----SNVLATGGGTSDRHIRIWNVCSG  311 (420)
T ss_dssp             EC-TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTC-----TTEEEEEECTTTCEEEEEETTTT
T ss_pred             ec-CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCc-----ccEEEEEeecCCCEEEEEeCCcc
Confidence            99 8999999999999999999875432  2456677899999999999986     6777765  46999999999999


Q ss_pred             CceEEEeecCCceEEEEECCCCCcEEEEE-ecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCc
Q psy17342        303 KPVHSFNEFRDYVMDVQWSPINPALFATV-EVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGA  381 (401)
Q Consensus       303 ~~~~~~~~~~~~v~~v~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  381 (401)
                      +++..+..| ..+.++.|+|+++.+++++ +.|+.|+|||+.+++.+..+   .+|...|++++|+|+|++|++|+.||+
T Consensus       312 ~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l---~gH~~~V~~l~~spdg~~l~S~s~D~t  387 (420)
T 4gga_A          312 ACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL---KGHTSRVLSLTMSPDGATVASAAADET  387 (420)
T ss_dssp             EEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred             ccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE---cCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence            998888874 5788999999998544433 37899999999988765544   478899999999999999999999999


Q ss_pred             EEEEEeccC
Q psy17342        382 ITMFDVGEV  390 (401)
Q Consensus       382 v~iw~~~~~  390 (401)
                      |+|||+.+.
T Consensus       388 vriWdv~~~  396 (420)
T 4gga_A          388 LRLWRCFEL  396 (420)
T ss_dssp             EEEECCSCS
T ss_pred             EEEEECCCC
Confidence            999999764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.6e-40  Score=287.47  Aligned_cols=277  Identities=16%  Similarity=0.234  Sum_probs=208.9

Q ss_pred             eEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC
Q psy17342        112 EFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG  191 (401)
Q Consensus       112 ~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg  191 (401)
                      .....|...|++++|+|++ ++|++|+.|++|++||+.++.....    ..+.+|.++|.+++|.+..++.+|++++.|+
T Consensus         7 ~~~~~H~~~V~~v~~s~~g-~~lasgs~D~~v~lwd~~~~~~~~~----~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~   81 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRNGGQILI----ADLRGHEGPVWQVAWAHPMYGNILASCSYDR   81 (316)
T ss_dssp             -------CCEEEEEECGGG-CEEEEEETTTEEEEEEEETTEEEEE----EEEECCSSCEEEEEECCGGGSSCEEEEETTS
T ss_pred             eecccccCeEEEeeEcCCC-CEEEEEeCCCeEEEEEecCCCcEEE----EEEcCCCccEEEEEeCCCCCCCEEEEEECCC
Confidence            3445689999999999987 7999999999999999987542111    2357999999999993222478999999999


Q ss_pred             cEEEeeccCCCCCccccccccccccCCccceEEEEeccC-CCCeEEEEcCCceEEEEeCCCCCC-CceeeecCCCCceee
Q psy17342        192 RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQN-DVNNFVVGCEDGNVYSACRHGNKA-GNVECYEGHEGPVVG  269 (401)
Q Consensus       192 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~-~~~~~~~~~~~~v~~  269 (401)
                      +|++||++... ......     ..+|...|.+++|+|. ++.+|++|+.|+.|++|+++.... .....+.+|...|.+
T Consensus        82 ~v~iWd~~~~~-~~~~~~-----~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~  155 (316)
T 3bg1_A           82 KVIIWREENGT-WEKSHE-----HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA  155 (316)
T ss_dssp             CEEEECCSSSC-CCEEEE-----ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCC
T ss_pred             EEEEEECCCCc-ceEEEE-----ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcce
Confidence            99999997521 111222     3458889999999943 278999999999999999875421 123556789999999


Q ss_pred             eecCccCCC-----------CCCCcEEEEEeCCCeEEEEEeeCC---CceEEEeecCCceEEEEECCCC---CcEEEEEe
Q psy17342        270 LSSHRAQGH-----------IDFSHLYLTSSYDWSVKLWNIKEN---KPVHSFNEFRDYVMDVQWSPIN---PALFATVE  332 (401)
Q Consensus       270 i~~~~~~~~-----------~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~v~~~~~~---~~~l~~~~  332 (401)
                      ++|+|....           +..+.+|++|+.|++|++||++..   +++..+.+|...|.+++|+|++   ..+|++++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s  235 (316)
T 3bg1_A          156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS  235 (316)
T ss_dssp             CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred             EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc
Confidence            999986210           011368999999999999999755   3566788899999999999986   23899999


Q ss_pred             cCCEEEEEeCCCCCCC-cceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEec-cCccceeeeee
Q psy17342        333 VAGRVDLWNLNLDTEV-PATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVG-EVGIACLKFIT  399 (401)
Q Consensus       333 ~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~-~~~~~~l~~~~  399 (401)
                      .|++|++||+.+.... ........|...|.+++|+|+|++|++++.||.|++|+.. .+...++..+.
T Consensus       236 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~~~~~  304 (316)
T 3bg1_A          236 QDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVN  304 (316)
T ss_dssp             TTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEEEECC
T ss_pred             CCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEeeecc
Confidence            9999999999863211 1111123567889999999999999999999999999986 44556666554

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-39  Score=294.44  Aligned_cols=293  Identities=16%  Similarity=0.292  Sum_probs=233.4

Q ss_pred             ccccceEEEEecCCCC-CeEEEEeccCCCCCCCCCcEEEEEeC----cCCCC------CceEEE---------ecCCCee
Q psy17342         63 SKNRNVTYMDWSTQHP-ELLLASYHRNKEAPNEPDGVCLIWNT----KFKKT------TPEFEF---------FCQSPVL  122 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~d~~v~iwd~----~~~~~------~~~~~~---------~~~~~v~  122 (401)
                      .|.+.|.+++|+|+++ +|++++          .|+.|++|++    .+++.      ...+..         +|...|+
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGE----------KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVT  112 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEE----------TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEE
T ss_pred             eccCceEEEEECCCCCcEEEEec----------CCceEEEEEEecccCCccccccccccccccccccccccccCCCCceE
Confidence            3558899999999999 899888          7999999999    76652      211111         1466999


Q ss_pred             EEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCC
Q psy17342        123 SCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLS  202 (401)
Q Consensus       123 ~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~  202 (401)
                      +++|+|++ .+|++|+.||.|++||.. +...      ..+..|...|.+++|  +|++.+|++++.|+.|++||+....
T Consensus       113 ~~~~s~~~-~~l~~~~~dg~i~i~~~~-~~~~------~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~  182 (425)
T 1r5m_A          113 CLAWSHDG-NSIVTGVENGELRLWNKT-GALL------NVLNFHRAPIVSVKW--NKDGTHIISMDVENVTILWNVISGT  182 (425)
T ss_dssp             EEEECTTS-SEEEEEETTSCEEEEETT-SCEE------EEECCCCSCEEEEEE--CTTSSEEEEEETTCCEEEEETTTTE
T ss_pred             EEEEcCCC-CEEEEEeCCCeEEEEeCC-CCee------eeccCCCccEEEEEE--CCCCCEEEEEecCCeEEEEECCCCc
Confidence            99999977 789999999999999933 3221      234689999999999  8999999999999999999997532


Q ss_pred             CCccccccccc--------cccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCc
Q psy17342        203 SPQETRDLQYN--------NKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR  274 (401)
Q Consensus       203 ~~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  274 (401)
                       ....+.....        ........+.+++|+ ++ ..+++++.++.|++||+...  ..+..+.+|..+|.+++|+|
T Consensus       183 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~g~i~~~d~~~~--~~~~~~~~~~~~i~~~~~~~  257 (425)
T 1r5m_A          183 -VMQHFELKETGGSSINAENHSGDGSLGVDVEWV-DD-DKFVIPGPKGAIFVYQITEK--TPTGKLIGHHGPISVLEFND  257 (425)
T ss_dssp             -EEEEECCC---------------CCCBSCCEEE-ET-TEEEEECGGGCEEEEETTCS--SCSEEECCCSSCEEEEEEET
T ss_pred             -EEEEeeccccCccceeeccccCCcceeeEEEEc-CC-CEEEEEcCCCeEEEEEcCCC--ceeeeeccCCCceEEEEECC
Confidence             1111111100        000011118889998 44 56899999999999999854  45777889999999999999


Q ss_pred             cCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe
Q psy17342        275 AQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAI  354 (401)
Q Consensus       275 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  354 (401)
                      +      +++|++++.|+.|++||+++++++..+..|...|.+++|+|++  ++++++.|+.|++||+++++.+..+   
T Consensus       258 ~------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~---  326 (425)
T 1r5m_A          258 T------NKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALS---  326 (425)
T ss_dssp             T------TTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEE---
T ss_pred             C------CCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEec---
Confidence            8      7899999999999999999999999999999999999999998  7889999999999999887644433   


Q ss_pred             ecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        355 VEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       355 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      ..+...|.+++|+|++++|++++.||.|++||+.+++
T Consensus       327 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          327 IVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             ECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             ccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            3567899999999999999999999999999998864

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-40  Score=321.90  Aligned_cols=306  Identities=10%  Similarity=0.077  Sum_probs=217.9

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      .|..+|.+++|+| +++|++++          .|++|+|||+.+++.+..+  .+...|++++|+|++ .+|++|+.||.
T Consensus        56 ~~~~~V~~l~fsp-g~~L~S~s----------~D~~v~lWd~~~~~~~~~~--~~~~~V~~v~~sp~g-~~l~sgs~dg~  121 (902)
T 2oaj_A           56 EDRSAIKEMRFVK-GIYLVVIN----------AKDTVYVLSLYSQKVLTTV--FVPGKITSIDTDASL-DWMLIGLQNGS  121 (902)
T ss_dssp             SSCCCEEEEEEET-TTEEEEEE----------TTCEEEEEETTTCSEEEEE--ECSSCEEEEECCTTC-SEEEEEETTSC
T ss_pred             CCCCCEEEEEEcC-CCEEEEEE----------CcCeEEEEECCCCcEEEEE--cCCCCEEEEEECCCC-CEEEEEcCCCc
Confidence            4678999999999 87899999          8999999999987665444  467899999999977 79999999999


Q ss_pred             EEEEECCCCCCCceee----cc-ccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCcccccccc----
Q psy17342        143 IVLWDTRVQKKTPVHR----TP-LSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQETRDLQY----  212 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~----~~-~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~----  212 (401)
                      |++||+++........    .. ....+|.++|.+++|  +|+ +..+++++.||.| +||++... ....+....    
T Consensus       122 V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~--sp~~~~~l~~g~~dg~v-lWd~~~~~-~~~~~~~~~~~g~  197 (902)
T 2oaj_A          122 MIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQW--NPRDIGTVLISYEYVTL-TYSLVENE-IKQSFIYELPPFA  197 (902)
T ss_dssp             EEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEE--ETTEEEEEEEECSSCEE-EEETTTTE-EEEEECCCBCTTC
T ss_pred             EEEEECCCCccccceeccccccccccccCCCCeEEEEE--ccCCCCEEEEEeCCCcE-EEECCCCc-eEEEEecccCCcC
Confidence            9999998765321100    00 224689999999999  785 5789999999999 99997632 221111110    


Q ss_pred             -------ccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCcee--ee---cC-------------CCCce
Q psy17342        213 -------NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVE--CY---EG-------------HEGPV  267 (401)
Q Consensus       213 -------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~--~~---~~-------------~~~~v  267 (401)
                             .....|...|.+++|+ |++.+|++|+.|+.|++||.+..+  ++.  .+   ..             |..+|
T Consensus       198 ~~~~~~~~~~~~h~~~V~~v~fs-pdg~~lasgs~Dg~i~lWd~~~g~--~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V  274 (902)
T 2oaj_A          198 PGGDFSEKTNEKRTPKVIQSLYH-PNSLHIITIHEDNSLVFWDANSGH--MIMARTVFETEINVPQPDYIRDSSTNAAKI  274 (902)
T ss_dssp             CCSTTCCCTTSCBCCCEEEEEEC-TTSSEEEEEETTCCEEEEETTTCC--EEEEECSSCSCTTSCCTTCCCCCSSCCCEE
T ss_pred             CCcccccccccccCCCeEEEEEc-CCCCEEEEEECCCeEEEEECCCCc--EEEEEeecccccCCCCCcCCCCCccccCCe
Confidence                   0012345789999999 889999999999999999997532  222  12   11             34578


Q ss_pred             eeeecCccCCCCCCCc----------------------------------------------------------------
Q psy17342        268 VGLSSHRAQGHIDFSH----------------------------------------------------------------  283 (401)
Q Consensus       268 ~~i~~~~~~~~~~~~~----------------------------------------------------------------  283 (401)
                      ++++|+|... ++.+.                                                                
T Consensus       275 ~~v~w~~~~~-pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  353 (902)
T 2oaj_A          275 SKVYWMCENN-PEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPR  353 (902)
T ss_dssp             EEEEEEECSS-TTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCS
T ss_pred             eEEEEEecCC-CCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCC
Confidence            8888853210 00012                                                                


Q ss_pred             ------------EEEEEeCCCeEEEEEeeCCCceEE-----------------------------------------Eee
Q psy17342        284 ------------LYLTSSYDWSVKLWNIKENKPVHS-----------------------------------------FNE  310 (401)
Q Consensus       284 ------------~l~s~~~d~~i~iwd~~~~~~~~~-----------------------------------------~~~  310 (401)
                                  .+++++.|+.|++||+.++.+...                                         +.+
T Consensus       354 ~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G  433 (902)
T 2oaj_A          354 QSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKG  433 (902)
T ss_dssp             SCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCC
T ss_pred             CCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccC
Confidence                        344445556666666644422111                                         122


Q ss_pred             cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCc--ceEEee------cCCCCeEEEEecCCCcEEEEEecCCcE
Q psy17342        311 FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVP--ATSAIV------EGAPALSRVTWTPNGTQLCVGDEKGAI  382 (401)
Q Consensus       311 ~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~------~~~~~v~~~~~s~~g~~l~~~~~dg~v  382 (401)
                      |...+.+++|+|+++ +|++|+.|++|++||+.++....  .+....      +|...|++++|+|||++||+|+.||+|
T Consensus       434 ~~~~v~sv~~spdg~-~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV  512 (902)
T 2oaj_A          434 GVRTKRQKLPAEYGT-AFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDV  512 (902)
T ss_dssp             SBCCCCCCCCCSEEE-EEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCE
T ss_pred             CcCCCCcccccccCc-EEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEE
Confidence            333344456678886 89999999999999999875321  122211      567889999999999999999999999


Q ss_pred             EEEEeccCc
Q psy17342        383 TMFDVGEVG  391 (401)
Q Consensus       383 ~iw~~~~~~  391 (401)
                      +||++.+++
T Consensus       513 ~lwd~~~~~  521 (902)
T 2oaj_A          513 VLFKYEVNQ  521 (902)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEecCcc
Confidence            999998863

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-39  Score=295.81  Aligned_cols=300  Identities=15%  Similarity=0.189  Sum_probs=234.2

Q ss_pred             ccccceEEEEecC-CCCCeEEEEeccCCCCCCCCCcEEEEEeCcC---CCCC-ceEEEecCCCeeEEEEeCCCCceEEEE
Q psy17342         63 SKNRNVTYMDWST-QHPELLLASYHRNKEAPNEPDGVCLIWNTKF---KKTT-PEFEFFCQSPVLSCCFAKFNPYLILGG  137 (401)
Q Consensus        63 ~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~---~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~g  137 (401)
                      .|.+.|++++|+| ++++|++++          .|+.|+|||+.+   +... ....+.|...|++++|+|++ .+|++|
T Consensus        61 ~h~~~V~~~~~s~~~~~~l~s~s----------~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~  129 (437)
T 3gre_A           61 NEPNSITSSAVSPGETPYLITGS----------DQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF-DAFAVS  129 (437)
T ss_dssp             TTTSCEEEEEEECSSSCEEEEEE----------TTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS-SEEEEE
T ss_pred             CCCCceEEEEECCCCCCEEEEec----------CCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC-CEEEEE
Confidence            5789999999999 999999999          799999999976   4422 35566789999999999966 789999


Q ss_pred             ecCCeEEEEECC---CCCCCceee----ccccccC--CCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccc
Q psy17342        138 TYSGQIVLWDTR---VQKKTPVHR----TPLSVMA--HTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETR  208 (401)
Q Consensus       138 ~~dg~v~iw~~~---~~~~~~~~~----~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~  208 (401)
                      +.||.|++||+.   .++......    ..+.+..  +...+.++.+..++++.+|++++.|+.|++||++.. .....+
T Consensus       130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~  208 (437)
T 3gre_A          130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL-ERLQII  208 (437)
T ss_dssp             ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC-CEEEEE
T ss_pred             eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-eeeEEE
Confidence            999999999995   332211110    0011222  778888998766899999999999999999999862 222222


Q ss_pred             ccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec-CCCCceeeeecCccCCCCCCCcEEEE
Q psy17342        209 DLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE-GHEGPVVGLSSHRAQGHIDFSHLYLT  287 (401)
Q Consensus       209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~~~~l~s  287 (401)
                      ..     ..|...|++++|+ +++.+|++|+.||.|++||++.  ..++..+. .|..+|.+++|+|.- +++ +.+|++
T Consensus       209 ~~-----~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~-s~~-~~~l~s  278 (437)
T 3gre_A          209 EN-----SPRHGAVSSICID-EECCVLILGTTRGIIDIWDIRF--NVLIRSWSFGDHAPITHVEVCQFY-GKN-SVIVVG  278 (437)
T ss_dssp             EC-----CGGGCCEEEEEEC-TTSCEEEEEETTSCEEEEETTT--TEEEEEEBCTTCEEEEEEEECTTT-CTT-EEEEEE
T ss_pred             cc-----CCCCCceEEEEEC-CCCCEEEEEcCCCeEEEEEcCC--ccEEEEEecCCCCceEEEEecccc-CCC-ccEEEE
Confidence            11     1167899999999 7899999999999999999984  34566665 788899999665531 011 679999


Q ss_pred             EeCCCeEEEEEeeCCCceEEEee--------------------------cCCceEEEEECCCCCcEEEEEecCCEEEEEe
Q psy17342        288 SSYDWSVKLWNIKENKPVHSFNE--------------------------FRDYVMDVQWSPINPALFATVEVAGRVDLWN  341 (401)
Q Consensus       288 ~~~d~~i~iwd~~~~~~~~~~~~--------------------------~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd  341 (401)
                      ++.|+.|++||+++++++..+..                          |...|.+++|+ +++ +|++++.|+.|++||
T Consensus       279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~i~~wd  356 (437)
T 3gre_A          279 GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSSIVMFS  356 (437)
T ss_dssp             ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTEEEEEE
T ss_pred             EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCCeEEEEE
Confidence            99999999999999988887764                          44557888888 554 899999999999999


Q ss_pred             CCCCCCCcceEEe----------------------------------ecCCCCeEEEEecCC--CcEEEEEecCCcEEEE
Q psy17342        342 LNLDTEVPATSAI----------------------------------VEGAPALSRVTWTPN--GTQLCVGDEKGAITMF  385 (401)
Q Consensus       342 ~~~~~~~~~~~~~----------------------------------~~~~~~v~~~~~s~~--g~~l~~~~~dg~v~iw  385 (401)
                      +.+++....+...                                  ..|...|++++|+++  +.+|++|+.||.|+||
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw  436 (437)
T 3gre_A          357 LNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF  436 (437)
T ss_dssp             TTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEE
T ss_pred             CCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEe
Confidence            9987765444310                                  127889999999998  8899999999999999


Q ss_pred             E
Q psy17342        386 D  386 (401)
Q Consensus       386 ~  386 (401)
                      +
T Consensus       437 ~  437 (437)
T 3gre_A          437 Q  437 (437)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.5e-39  Score=284.77  Aligned_cols=281  Identities=16%  Similarity=0.145  Sum_probs=216.9

Q ss_pred             hhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEe
Q psy17342          6 AGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASY   85 (401)
Q Consensus         6 ~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   85 (401)
                      -+..++||+.|++|++||+.........                 ....    .....|...|.+++|+|++.++++++ 
T Consensus        38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~-----------------~~~~----~~l~~h~~~V~~~~~~~~~~~l~s~s-   95 (343)
T 2xzm_R           38 DSPVLISGSRDKTVMIWKLYEEEQNGYF-----------------GIPH----KALTGHNHFVSDLALSQENCFAISSS-   95 (343)
T ss_dssp             CCCEEEEEETTSCEEEEEECSSCCSSBS-----------------EEEE----EEECCCSSCEEEEEECSSTTEEEEEE-
T ss_pred             CCCEEEEEcCCCEEEEEECCcCCccccc-----------------cccc----chhccCCCceEEEEECCCCCEEEEEc-
Confidence            4678999999999999998654311000                 0000    11125778999999999999999999 


Q ss_pred             ccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccC
Q psy17342         86 HRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMA  165 (401)
Q Consensus        86 ~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~  165 (401)
                               .|++|++||+.+++....+ ..|...|.+++|+|++ .+|++|+.|+.|++||+......    .......
T Consensus        96 ---------~D~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~----~~~~~~~  160 (343)
T 2xzm_R           96 ---------WDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKF----SSAEKEN  160 (343)
T ss_dssp             ---------TTSEEEEEETTSSCEEEEE-ECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEE----ECCTTTS
T ss_pred             ---------CCCcEEEEECCCCcEEEEE-cCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCcee----eeecccC
Confidence                     7999999999987655433 3578999999999987 78899999999999999743211    1122347


Q ss_pred             CCCcEEEEEEeecCCc----------eEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeE
Q psy17342        166 HTHPVFCMSVIGTQNA----------HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNF  235 (401)
Q Consensus       166 ~~~~v~~~~~~~~~~~----------~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  235 (401)
                      |...|.+++|  +|++          .+|++++.|+.|++||...    .....     +.+|...|.+++|+ |++++|
T Consensus       161 ~~~~v~~~~~--~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~~-----~~~h~~~v~~~~~s-~~g~~l  228 (343)
T 2xzm_R          161 HSDWVSCVRY--SPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF----QIRYT-----FKAHESNVNHLSIS-PNGKYI  228 (343)
T ss_dssp             CSSCEEEEEE--CCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT----EEEEE-----EECCSSCEEEEEEC-TTSSEE
T ss_pred             CCceeeeeee--ccccccccccCCCCCEEEEEcCCCEEEEEcCCC----ceeEE-----EcCccccceEEEEC-CCCCEE
Confidence            9999999999  6665          7899999999999999431    11112     34488899999999 899999


Q ss_pred             EEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceE--EEe----
Q psy17342        236 VVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVH--SFN----  309 (401)
Q Consensus       236 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~----  309 (401)
                      ++|+.|+.|++||+..... ....+ .+...|.+++|+|+      +.+++++ .|+.|++||+.+++...  .+.    
T Consensus       229 ~sgs~dg~v~iwd~~~~~~-~~~~~-~~~~~v~~v~~sp~------~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~  299 (343)
T 2xzm_R          229 ATGGKDKKLLIWDILNLTY-PQREF-DAGSTINQIAFNPK------LQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPI  299 (343)
T ss_dssp             EEEETTCEEEEEESSCCSS-CSEEE-ECSSCEEEEEECSS------SCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSG
T ss_pred             EEEcCCCeEEEEECCCCcc-cceee-cCCCcEEEEEECCC------CCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcc
Confidence            9999999999999853322 23333 35567999999998      5666654 58899999998766544  443    


Q ss_pred             -------ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342        310 -------EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD  345 (401)
Q Consensus       310 -------~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~  345 (401)
                             +|...|.+++|+|+++ +|++|+.||.|++|++.++
T Consensus       300 ~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          300 TKAEGQKGKNPQCTSLAWNALGK-KLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             GGBTTBCCSCCCEEEEEECSSSC-CEEEEETTSEEEEEEEEEE
T ss_pred             hhhhhhcCCCCceEEEEECCCCC-eEEEecCCceEEEEEEEcc
Confidence                   5778899999999998 7899999999999998754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.3e-39  Score=280.12  Aligned_cols=278  Identities=19%  Similarity=0.295  Sum_probs=227.0

Q ss_pred             chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeE
Q psy17342          2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELL   81 (401)
Q Consensus         2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   81 (401)
                      .|..-+..+++|+.||.+++|+.......                        ..+    ..|...|.+++|+|++++|+
T Consensus        30 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~------------------------~~~----~~h~~~v~~~~~~~~~~~l~   81 (312)
T 4ery_A           30 KFSPNGEWLASSSADKLIKIWGAYDGKFE------------------------KTI----SGHKLGISDVAWSSDSNLLV   81 (312)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEE------------------------EEE----CCCSSCEEEEEECTTSSEEE
T ss_pred             EECCCCCEEEEeeCCCeEEEEeCCCcccc------------------------hhh----ccCCCceEEEEEcCCCCEEE
Confidence            45666789999999999999997544310                        001    14668899999999999999


Q ss_pred             EEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccc
Q psy17342         82 LASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPL  161 (401)
Q Consensus        82 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~  161 (401)
                      +++          .|+.|++||+.+++.+..+ ..|...|.+++|+|++ .+|++|+.|+.|++||+++++..      .
T Consensus        82 s~~----------~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~------~  143 (312)
T 4ery_A           82 SAS----------DDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCL------K  143 (312)
T ss_dssp             EEE----------TTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEE------E
T ss_pred             EEC----------CCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEE------E
Confidence            999          7999999999977655433 3578899999999977 78999999999999999877643      2


Q ss_pred             cccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC
Q psy17342        162 SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED  241 (401)
Q Consensus       162 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  241 (401)
                      .+..|..+|.+++|  ++++.+|++++.||.|++||++.... ..  .+    ...+...+.+++|+ ++++++++++.|
T Consensus       144 ~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~~wd~~~~~~-~~--~~----~~~~~~~~~~~~~~-~~~~~l~~~~~d  213 (312)
T 4ery_A          144 TLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQC-LK--TL----IDDDNPPVSFVKFS-PNGKYILAATLD  213 (312)
T ss_dssp             EECCCSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCE-EE--EE----CCSSCCCEEEEEEC-TTSSEEEEEETT
T ss_pred             EecCCCCcEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCce-ee--EE----eccCCCceEEEEEC-CCCCEEEEEcCC
Confidence            34689999999999  89999999999999999999975321 11  11    12356689999999 899999999999


Q ss_pred             ceEEEEeCCCCCCCceeeecCCCCceeee--ecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEE
Q psy17342        242 GNVYSACRHGNKAGNVECYEGHEGPVVGL--SSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQ  319 (401)
Q Consensus       242 ~~i~~~~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~  319 (401)
                      +.|++||++.  .+.+..+.+|...+.++  .+.+..     +.+|++|+.|+.|++||+++++.+..+.+|...|.+++
T Consensus       214 ~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~  286 (312)
T 4ery_A          214 NTLKLWDYSK--GKCLKTYTGHKNEKYCIFANFSVTG-----GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA  286 (312)
T ss_dssp             TEEEEEETTT--TEEEEEECSSCCSSSCCCEEEECSS-----SCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             CeEEEEECCC--CcEEEEEEecCCceEEEEEEEEeCC-----CcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEe
Confidence            9999999984  34677788887665443  333332     68999999999999999999999999999999999999


Q ss_pred             ECCCCCcEEEEEe--cCCEEEEEeCC
Q psy17342        320 WSPINPALFATVE--VAGRVDLWNLN  343 (401)
Q Consensus       320 ~~~~~~~~l~~~~--~d~~i~iwd~~  343 (401)
                      |+|+++ ++++++  .|+.|++|+..
T Consensus       287 ~~p~~~-~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          287 CHPTEN-IIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ECSSSS-EEEEEECTTTCCEEEEECC
T ss_pred             ecCcCC-ceEEEEccCCccEEEecCC
Confidence            999997 788876  69999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=7.4e-40  Score=292.05  Aligned_cols=303  Identities=17%  Similarity=0.207  Sum_probs=227.2

Q ss_pred             chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeE
Q psy17342          2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELL   81 (401)
Q Consensus         2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   81 (401)
                      .|..-+.++++|+ ++.+++|+...+..+..+..+..     .......     ........+...|.+++|+|++++|+
T Consensus        71 ~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~-----~~~~~~~-----~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           71 KFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSA-----ANKDPEN-----LNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             EECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------------------------CCCCBEEEEEECTTSSEEE
T ss_pred             EECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccc-----ccccccc-----ccccccCCCceeEEEEEECCCCCEEE
Confidence            3555678889887 78999999876653222211100     0000000     00001112335699999999999999


Q ss_pred             EEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccc
Q psy17342         82 LASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPL  161 (401)
Q Consensus        82 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~  161 (401)
                      +++          .|+.|+|||+.+++.... ...|...|.+++|+|++ .+|++|+.|++|++||+++++....     
T Consensus       140 s~~----------~d~~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~-----  202 (393)
T 1erj_A          140 TGA----------EDRLIRIWDIENRKIVMI-LQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLT-----  202 (393)
T ss_dssp             EEE----------TTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEE-----
T ss_pred             EEc----------CCCeEEEEECCCCcEEEE-EccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEE-----
Confidence            999          799999999987654432 33578899999999977 7889999999999999988764321     


Q ss_pred             cccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC
Q psy17342        162 SVMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE  240 (401)
Q Consensus       162 ~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  240 (401)
                        ..+...+.+++|  +| ++.+|++++.|+.|++||++... .............+|...|.+++|+ +++.+|++|+.
T Consensus       203 --~~~~~~v~~~~~--~~~~~~~l~~~s~d~~v~iwd~~~~~-~~~~~~~~~~~~~~h~~~v~~v~~~-~~g~~l~s~s~  276 (393)
T 1erj_A          203 --LSIEDGVTTVAV--SPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSL  276 (393)
T ss_dssp             --EECSSCEEEEEE--CSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC------CCCSSCEEEEEEC-TTSSEEEEEET
T ss_pred             --EEcCCCcEEEEE--ECCCCCEEEEEcCCCcEEEEECCCCc-EEEeecccccCCCCCCCCEEEEEEC-CCCCEEEEEeC
Confidence              245678999999  77 88999999999999999987632 1111111111124588899999999 89999999999


Q ss_pred             CceEEEEeCCCCC----------CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee
Q psy17342        241 DGNVYSACRHGNK----------AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE  310 (401)
Q Consensus       241 d~~i~~~~~~~~~----------~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  310 (401)
                      |+.|++||++...          ..+...+.+|...|.+++|+|+      +.+|++|+.|+.|++||+++++++..+.+
T Consensus       277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------~~~l~sgs~D~~v~iwd~~~~~~~~~l~~  350 (393)
T 1erj_A          277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN------DEYILSGSKDRGVLFWDKKSGNPLLMLQG  350 (393)
T ss_dssp             TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGG------GCEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCC------CCEEEEEeCCCeEEEEECCCCeEEEEECC
Confidence            9999999987422          2245567889999999999998      78999999999999999999999999999


Q ss_pred             cCCceEEEEECC------CCCcEEEEEecCCEEEEEeCCCC
Q psy17342        311 FRDYVMDVQWSP------INPALFATVEVAGRVDLWNLNLD  345 (401)
Q Consensus       311 ~~~~v~~v~~~~------~~~~~l~~~~~d~~i~iwd~~~~  345 (401)
                      |...|.+++|+|      ++. +|++|+.||.|+||++...
T Consensus       351 h~~~v~~v~~~~~~~~~p~~~-~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          351 HRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             CSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEEEC
T ss_pred             CCCCEEEEEecCCcCcCCCCC-EEEEECCCCcEEECccccc
Confidence            999999999987      454 8999999999999998653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.7e-39  Score=282.62  Aligned_cols=291  Identities=12%  Similarity=0.186  Sum_probs=238.1

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQI  143 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v  143 (401)
                      +.++|.+++|+|+|+.++++.          .++.+.+|..... ........|...|++++|+|++ .++++++ ||.|
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~----------~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~-dg~i   74 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPF----------PPDALIGPGIPRH-ARQINTLNHGEVVCAVTISNPT-RHVYTGG-KGCV   74 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCC----------CTTSSSSTTCCSE-EEEEEEECCSSCCCEEEECSSS-SEEEEEC-BSEE
T ss_pred             cCCceeEEEECCCCCEEEeec----------CCCcEeccccCCc-cccceeccCCCceEEEEEecCC-cEEEEcC-CCeE
Confidence            347899999999999888777          4555555554422 2223345689999999999977 7888887 9999


Q ss_pred             EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceE
Q psy17342        144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL  223 (401)
Q Consensus       144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (401)
                      ++|++.+......... .....|...|.+++|  +|++.+|++++.|+.|++||++... ......     ...|...+.
T Consensus        75 ~iw~~~~~~~~~~~~~-~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~-----~~~~~~~i~  145 (337)
T 1gxr_A           75 KVWDISHPGNKSPVSQ-LDCLNRDNYIRSCKL--LPDGCTLIVGGEASTLSIWDLAAPT-PRIKAE-----LTSSAPACY  145 (337)
T ss_dssp             EEEETTSTTCCSCSEE-EECSCTTSBEEEEEE--CTTSSEEEEEESSSEEEEEECCCC---EEEEE-----EECSSSCEE
T ss_pred             EEEECCCCCceeeeec-ccccCCCCcEEEEEE--cCCCCEEEEEcCCCcEEEEECCCCC-cceeee-----cccCCCceE
Confidence            9999987654322111 122378999999999  8999999999999999999998632 112222     234778899


Q ss_pred             EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC
Q psy17342        224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK  303 (401)
Q Consensus       224 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  303 (401)
                      +++|+ ++++++++++.|+.|++||++..  +.+..+.+|...|.+++|+|+      +++|++++.|+.|++||+++++
T Consensus       146 ~~~~~-~~~~~l~~~~~dg~v~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~dg~i~~~d~~~~~  216 (337)
T 1gxr_A          146 ALAIS-PDSKVCFSCCSDGNIAVWDLHNQ--TLVRQFQGHTDGASCIDISND------GTKLWTGGLDNTVRSWDLREGR  216 (337)
T ss_dssp             EEEEC-TTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTT------SSEEEEEETTSEEEEEETTTTE
T ss_pred             EEEEC-CCCCEEEEEeCCCcEEEEeCCCC--ceeeeeecccCceEEEEECCC------CCEEEEEecCCcEEEEECCCCc
Confidence            99999 79999999999999999999843  467788899999999999998      7899999999999999999988


Q ss_pred             ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEE
Q psy17342        304 PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAIT  383 (401)
Q Consensus       304 ~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~  383 (401)
                      .+..+. +...+.+++|+|+++ ++++++.|+.|++||+++.+..    ....|...|.+++|+|++++|++++.||.|+
T Consensus       217 ~~~~~~-~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  290 (337)
T 1gxr_A          217 QLQQHD-FTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPDKY----QLHLHESCVLSLKFAYCGKWFVSTGKDNLLN  290 (337)
T ss_dssp             EEEEEE-CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSSCEE----EECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             eEeeec-CCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCCeE----EEcCCccceeEEEECCCCCEEEEecCCCcEE
Confidence            887775 578899999999997 7899999999999999886532    2346788999999999999999999999999


Q ss_pred             EEEeccCc
Q psy17342        384 MFDVGEVG  391 (401)
Q Consensus       384 iw~~~~~~  391 (401)
                      +|++.+++
T Consensus       291 ~~~~~~~~  298 (337)
T 1gxr_A          291 AWRTPYGA  298 (337)
T ss_dssp             EEETTTCC
T ss_pred             EEECCCCe
Confidence            99999875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.2e-41  Score=298.31  Aligned_cols=291  Identities=10%  Similarity=0.061  Sum_probs=222.2

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCC--CCCceEEEecCCCeeEEEEeCCCCceEEEEecCC
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK--KTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG  141 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg  141 (401)
                      +.++|.+++|+|++++|++++          .|+.|+|||+.++  +....+ ..|...|.+++|+|++ ++|++|+.|+
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~-~~l~s~s~d~   77 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTT----------ATNQVELYEQDGNGWKHARTF-SDHDKIVTCVDWAPKS-NRIVTCSQDR   77 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCC----------SSSCBCEEEEETTEEEECCCB-CCCSSCEEEEEECTTT-CCEEEEETTS
T ss_pred             CCCcEEEEEECCCCCEEEEec----------CCCEEEEEEccCCceEEEEEE-ecCCceEEEEEEeCCC-CEEEEEeCCC
Confidence            347899999999999999988          7999999999976  333333 3578999999999987 7899999999


Q ss_pred             eEEEEECCCCC-CCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccC-Cc
Q psy17342        142 QIVLWDTRVQK-KTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT-KN  219 (401)
Q Consensus       142 ~v~iw~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~-~~  219 (401)
                      .|++||+.++. ....    ..+..|...|.+++|  +|++.+|++++.|+.|++||++..........     ... |.
T Consensus        78 ~v~vwd~~~~~~~~~~----~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~h~  146 (377)
T 3dwl_C           78 NAYVYEKRPDGTWKQT----LVLLRLNRAATFVRW--SPNEDKFAVGSGARVISVCYFEQENDWWVSKH-----LKRPLR  146 (377)
T ss_dssp             SEEEC------CCCCE----EECCCCSSCEEEEEC--CTTSSCCEEEESSSCEEECCC-----CCCCEE-----ECSSCC
T ss_pred             eEEEEEcCCCCceeee----eEecccCCceEEEEE--CCCCCEEEEEecCCeEEEEEECCcccceeeeE-----eecccC
Confidence            99999998876 2211    335689999999999  89999999999999999999986332111111     223 78


Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCC----------------CCceeeecCCCCceeeeecCccCCCCCCCc
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK----------------AGNVECYEGHEGPVVGLSSHRAQGHIDFSH  283 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~----------------~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~  283 (401)
                      ..|.+++|+ +++++|++++.|+.|++||+....                ..++..+ +|...|.+++|+|+      ++
T Consensus       147 ~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~------~~  218 (377)
T 3dwl_C          147 STILSLDWH-PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPS------GN  218 (377)
T ss_dssp             SCEEEEEEC-TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTT------SS
T ss_pred             CCeEEEEEc-CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCC------CC
Confidence            899999999 799999999999999999985221                2244455 89999999999998      79


Q ss_pred             EEEEEeCCCeEEEEEeeCCCc----eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC--C---------
Q psy17342        284 LYLTSSYDWSVKLWNIKENKP----VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE--V---------  348 (401)
Q Consensus       284 ~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~---------  348 (401)
                      +|++++.|+.|++||+++++.    +..+..|...|.+++|+|+++ +|++++.++.+ +|+......  .         
T Consensus       219 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  296 (377)
T 3dwl_C          219 ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA-IVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSK  296 (377)
T ss_dssp             CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTE-EEEEESSSSEE-EECCCC---CCSBCCCSCCCC
T ss_pred             EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCC-EEEEEcCCcEE-EEEeCCCceEEEeeecccccc
Confidence            999999999999999999888    888999999999999999996 78888766655 776652110  0         


Q ss_pred             -------------------------cceE-------------EeecCCCCeEEEEecCCC-c---EEEEEecCCcEEEEE
Q psy17342        349 -------------------------PATS-------------AIVEGAPALSRVTWTPNG-T---QLCVGDEKGAITMFD  386 (401)
Q Consensus       349 -------------------------~~~~-------------~~~~~~~~v~~~~~s~~g-~---~l~~~~~dg~v~iw~  386 (401)
                                               ..+.             ....|...|+++++.+.. .   .|++++.||.|++||
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd  376 (377)
T 3dwl_C          297 TSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT  376 (377)
T ss_dssp             CCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred             cccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence                                     0000             011277889999976653 3   699999999999998


Q ss_pred             e
Q psy17342        387 V  387 (401)
Q Consensus       387 ~  387 (401)
                      +
T Consensus       377 l  377 (377)
T 3dwl_C          377 L  377 (377)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.3e-39  Score=296.04  Aligned_cols=302  Identities=15%  Similarity=0.267  Sum_probs=229.6

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCC----------CceEEEecC------------CC
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKT----------TPEFEFFCQ------------SP  120 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~----------~~~~~~~~~------------~~  120 (401)
                      .+.+.|.+++|+|+|++|++|+          .||.|+|||+.+++.          .......|.            ..
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~   95 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGD----------KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEK   95 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEE----------TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred             cccCcEEEEEECCCCCEEEEEc----------CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCc
Confidence            4668999999999999999999          799999999987552          111223466            88


Q ss_pred             eeEEEEeCCCC-ceEEEEecCCeEEEEECCCCCCCce----------------------------------eeccccccC
Q psy17342        121 VLSCCFAKFNP-YLILGGTYSGQIVLWDTRVQKKTPV----------------------------------HRTPLSVMA  165 (401)
Q Consensus       121 v~~~~~~~~~~-~~l~~g~~dg~v~iw~~~~~~~~~~----------------------------------~~~~~~~~~  165 (401)
                      |++++|+|++. .+|++++.|+.|++|++........                                  ........+
T Consensus        96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (447)
T 3dw8_B           96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA  175 (447)
T ss_dssp             CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred             eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence            99999999764 5888889999999999976432100                                  000011357


Q ss_pred             CCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCC-CeEEEEcCCceE
Q psy17342        166 HTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDV-NNFVVGCEDGNV  244 (401)
Q Consensus       166 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i  244 (401)
                      |...|.+++|  +|++.+|+++ .|+.|++||++..................|...|.+++|+ |++ .+|++|+.||.|
T Consensus       176 h~~~v~~~~~--~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          176 HTYHINSISI--NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH-PNSCNTFVYSSSKGTI  251 (447)
T ss_dssp             CSSCCCEEEE--CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC-SSCTTEEEEEETTSCE
T ss_pred             CCcceEEEEE--cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC-CCCCcEEEEEeCCCeE
Confidence            9999999999  8999999998 7999999999842322222211111134588899999999 676 999999999999


Q ss_pred             EEEeCCCCCC--CceeeecCCCC------------ceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC-CCceEEEe
Q psy17342        245 YSACRHGNKA--GNVECYEGHEG------------PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE-NKPVHSFN  309 (401)
Q Consensus       245 ~~~~~~~~~~--~~~~~~~~~~~------------~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~  309 (401)
                      ++||++....  .....+.+|..            .|.+++|+|+      +.+|++++. +.|++||+++ ++++..+.
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~~~~~-~~v~iwd~~~~~~~~~~~~  324 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS------GRYMMTRDY-LSVKVWDLNMENRPVETYQ  324 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTT------SSEEEEEES-SEEEEEETTCCSSCSCCEE
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCC------CCEEEEeeC-CeEEEEeCCCCccccceee
Confidence            9999985432  11567777776            8999999998      799999998 9999999997 88999998


Q ss_pred             ecCCc---------------eEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEE---------------------
Q psy17342        310 EFRDY---------------VMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSA---------------------  353 (401)
Q Consensus       310 ~~~~~---------------v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------------------  353 (401)
                      .|...               +..++|+|+++ +|++++.||.|++||+.+++.+. +..                     
T Consensus       325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  402 (447)
T 3dw8_B          325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGK  402 (447)
T ss_dssp             SCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSC
T ss_pred             ccccccccccccccccccccceEEEECCCCC-EEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCC
Confidence            87642               33499999997 78999999999999998875431 110                     


Q ss_pred             ---------eecCCCCeEEEEecCCCcEEEEEecCCcEEEEEec
Q psy17342        354 ---------IVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       354 ---------~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~  388 (401)
                               .......|..++|+|++++||+++.++ +++|.-+
T Consensus       403 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          403 RKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             cccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence                     012345688999999999999999886 8888643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=7.3e-39  Score=290.75  Aligned_cols=306  Identities=18%  Similarity=0.266  Sum_probs=252.3

Q ss_pred             hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH   86 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   86 (401)
                      ++++++|+.||.+++||......+..                            ...|...|.+++|+  +..+++++  
T Consensus       129 g~~l~sg~~dg~i~vwd~~~~~~~~~----------------------------~~~h~~~v~~~~~~--~~~l~s~~--  176 (445)
T 2ovr_B          129 GNRIVSGSDDNTLKVWSAVTGKCLRT----------------------------LVGHTGGVWSSQMR--DNIIISGS--  176 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEE----------------------------CCCCSSCEEEEEEE--TTEEEEEE--
T ss_pred             CCEEEEEECCCcEEEEECCCCcEEEE----------------------------EcCCCCCEEEEEec--CCEEEEEe--
Confidence            67899999999999999865541100                            01467889999998  45888888  


Q ss_pred             cCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCC
Q psy17342         87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH  166 (401)
Q Consensus        87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  166 (401)
                              .|+.|++||+.+++....+ ..|...|.+++|++   ..+++|+.||.|++||+.+++..      ..+.+|
T Consensus       177 --------~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~------~~~~~~  238 (445)
T 2ovr_B          177 --------TDRTLKVWNAETGECIHTL-YGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCL------HVLMGH  238 (445)
T ss_dssp             --------TTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEE------EEEECC
T ss_pred             --------CCCeEEEEECCcCcEEEEE-CCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEE------EEEcCC
Confidence                    7999999999987655433 35788999999964   57999999999999999887643      234689


Q ss_pred             CCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEE
Q psy17342        167 THPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYS  246 (401)
Q Consensus       167 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~  246 (401)
                      ...|.+++|    ++..+++++.||.|++||++...   ....     ..+|...|.+++|   ++..+++++.|+.|++
T Consensus       239 ~~~v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~---~~~~-----~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i  303 (445)
T 2ovr_B          239 VAAVRCVQY----DGRRVVSGAYDFMVKVWDPETET---CLHT-----LQGHTNRVYSLQF---DGIHVVSGSLDTSIRV  303 (445)
T ss_dssp             SSCEEEEEE----CSSCEEEEETTSCEEEEEGGGTE---EEEE-----ECCCSSCEEEEEE---CSSEEEEEETTSCEEE
T ss_pred             cccEEEEEE----CCCEEEEEcCCCEEEEEECCCCc---EeEE-----ecCCCCceEEEEE---CCCEEEEEeCCCeEEE
Confidence            999999998    67899999999999999997521   1222     2347889999998   5789999999999999


Q ss_pred             EeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee---cCCceEEEEECCC
Q psy17342        247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE---FRDYVMDVQWSPI  323 (401)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~v~~~~~  323 (401)
                      ||++.  .+.+..+.+|...+.++.+.        ++++++++.|+.|++||+++++++..+..   |...|.+++|++ 
T Consensus       304 ~d~~~--~~~~~~~~~~~~~v~~~~~~--------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-  372 (445)
T 2ovr_B          304 WDVET--GNCIHTLTGHQSLTSGMELK--------DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-  372 (445)
T ss_dssp             EETTT--CCEEEEECCCCSCEEEEEEE--------TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS-
T ss_pred             EECCC--CCEEEEEcCCcccEEEEEEe--------CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC-
Confidence            99984  44678889999999988875        57999999999999999999999999986   888999999974 


Q ss_pred             CCcEEEEEecCCEEEEEeCCCCCCCcceEEe--ecCCCCeEEEEecCCCcEEEEEecCCc----EEEEEeccC
Q psy17342        324 NPALFATVEVAGRVDLWNLNLDTEVPATSAI--VEGAPALSRVTWTPNGTQLCVGDEKGA----ITMFDVGEV  390 (401)
Q Consensus       324 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~dg~----v~iw~~~~~  390 (401)
                       + ++++++.||.|++||+.+++.+..+...  ..+...|++++|+|++.+|++|+.||.    |.+||+...
T Consensus       373 -~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          373 -N-FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             -S-EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             -C-EEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence             3 7999999999999999998766554321  245678999999999999999999998    999999764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.7e-39  Score=290.58  Aligned_cols=284  Identities=14%  Similarity=0.121  Sum_probs=228.8

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      ..+++++|+|++++|++++          .|+.|++||+.+++....+.  ....+....|+|++ .+|++|+.||.|++
T Consensus        57 ~~~~~~~~s~~g~~l~~~~----------~d~~v~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~-~~l~~~~~dg~i~i  123 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKAR----------LDGHDFLFNTIIRDGSKMLK--RADYTAVDTAKLQM-RRFILGTTEGDIKV  123 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEE----------ETTEEEEEECCSEETTTTSC--SCCEEEEEEECSSS-CEEEEEETTSCEEE
T ss_pred             ccccceeeeecCCeEEEEE----------cCCcEEEEEecccceeeEEe--cCCceEEEEEecCC-CEEEEEECCCCEEE
Confidence            4456899999999999999          69999999998765544332  22344455678866 78999999999999


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEE
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL  225 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (401)
                      ||+.++...      ..+..|...|.+++|  +|++.+|++++.|+.|++||++.....   ..     +.+|...|.++
T Consensus       124 wd~~~~~~~------~~~~~h~~~v~~~~~--~~~~~~l~s~s~d~~i~iwd~~~~~~~---~~-----~~~h~~~v~~~  187 (420)
T 3vl1_A          124 LDSNFNLQR------EIDQAHVSEITKLKF--FPSGEALISSSQDMQLKIWSVKDGSNP---RT-----LIGHRATVTDI  187 (420)
T ss_dssp             ECTTSCEEE------EETTSSSSCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCCC---EE-----EECCSSCEEEE
T ss_pred             EeCCCccee------eecccccCccEEEEE--CCCCCEEEEEeCCCeEEEEeCCCCcCc---eE-----EcCCCCcEEEE
Confidence            999876532      224689999999999  899999999999999999999863321   12     33488899999


Q ss_pred             EeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCC------------------------CCceeeeecCccCCCCCC
Q psy17342        226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGH------------------------EGPVVGLSSHRAQGHIDF  281 (401)
Q Consensus       226 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~------------------------~~~v~~i~~~~~~~~~~~  281 (401)
                      +|+ +++..|++++.|+.|++||++..  +.+..+..|                        ...+.+++|+|+      
T Consensus       188 ~~~-~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------  258 (420)
T 3vl1_A          188 AII-DRGRNVLSASLDGTIRLWECGTG--TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY------  258 (420)
T ss_dssp             EEE-TTTTEEEEEETTSCEEEEETTTT--EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT------
T ss_pred             EEc-CCCCEEEEEcCCCcEEEeECCCC--ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC------
Confidence            999 79999999999999999999743  345555532                        355666777887      


Q ss_pred             CcEEEEEeCCCeEEEEEeeCCCceEEEee-cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC-CcceEEeecCCC
Q psy17342        282 SHLYLTSSYDWSVKLWNIKENKPVHSFNE-FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE-VPATSAIVEGAP  359 (401)
Q Consensus       282 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~  359 (401)
                      +++|++++.|+.|++||+++++.+..+.. |...|.+++|+|+++.+|++++.||.|++||+++++. +..+  ...+..
T Consensus       259 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~--~~~~~~  336 (420)
T 3vl1_A          259 GKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF--LINEGT  336 (420)
T ss_dssp             TEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE--EESTTS
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhh--hccCCC
Confidence            79999999999999999999888777754 7889999999999976899999999999999998754 3232  234667


Q ss_pred             CeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        360 ALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       360 ~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      .+.++.+ +++++|++++.||.|++|++.+.
T Consensus       337 ~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          337 PINNVYF-AAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             CEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred             CceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence            7888855 58899999999999999999874

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.2e-40  Score=333.55  Aligned_cols=356  Identities=14%  Similarity=0.241  Sum_probs=277.5

Q ss_pred             chhhhhccccccccccccccccccCCCCCCCCccc------cccccCCC------CCCCCCceeeeeee----ccccccc
Q psy17342          2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQD------LQFDMTGD------EKSSTKLSFCRQFF----DEKWSKN   65 (401)
Q Consensus         2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~------~~~~~~~~------~~~~~~~~~~~~~~----~~~~~~~   65 (401)
                      .|..-+.++++|+.||.+++||......+..+..+      ..|....+      ......+.+|....    .....|.
T Consensus       664 ~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~  743 (1249)
T 3sfz_A          664 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT  743 (1249)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS
T ss_pred             EEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC
Confidence            45566789999999999999999877644333221      11322211      11223344443211    1223588


Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCce---------------------------------
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE---------------------------------  112 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~---------------------------------  112 (401)
                      ..|.+++|+|+++.|++++          .||.|++||+.+++....                                 
T Consensus       744 ~~v~~~~~sp~~~~l~s~s----------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  813 (1249)
T 3sfz_A          744 NSVNHCRFSPDDELLASCS----------ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI  813 (1249)
T ss_dssp             SCEEEEEECSSTTEEEEEE----------SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEE
T ss_pred             CCEEEEEEecCCCEEEEEE----------CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEE
Confidence            9999999999999999999          799999999875432111                                 


Q ss_pred             ---------------------EEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEE
Q psy17342        113 ---------------------FEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVF  171 (401)
Q Consensus       113 ---------------------~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  171 (401)
                                           ....|...|.+++|+|++ .++++|+.+|.|++|++.++...      ..+.+|...|.
T Consensus       814 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~~~------~~~~~h~~~v~  886 (1249)
T 3sfz_A          814 IVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRLKV------ADCRGHLSWVH  886 (1249)
T ss_dssp             EEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTEEE------EEECCCSSCEE
T ss_pred             EEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCcee------eecCCCccceE
Confidence                                 111456789999999977 78889999999999999876543      33578999999


Q ss_pred             EEEEeecCCceEEEEEeCCCcEEEeeccCCCCC-----------------------------------------------
Q psy17342        172 CMSVIGTQNAHNLISISNDGRLCSWSLEMLSSP-----------------------------------------------  204 (401)
Q Consensus       172 ~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-----------------------------------------------  204 (401)
                      +++|  +|++..|++++.||.|++|++......                                               
T Consensus       887 ~v~~--spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  964 (1249)
T 3sfz_A          887 GVMF--SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQV  964 (1249)
T ss_dssp             EEEE--CTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCE
T ss_pred             EEEE--CCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcE
Confidence            9999  899999999999999999996521000                                               


Q ss_pred             --------------------ccccccc----cccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeee
Q psy17342        205 --------------------QETRDLQ----YNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY  260 (401)
Q Consensus       205 --------------------~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~  260 (401)
                                          .....+.    .....+|...|.+++|+ ++++++++++.||.|++|++....   ...+
T Consensus       965 ~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~s~~~dg~i~vwd~~~~~---~~~~ 1040 (1249)
T 3sfz_A          965 SCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFT-ADGKTLISSSEDSVIQVWNWQTGD---YVFL 1040 (1249)
T ss_dssp             EEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEEC-SSSSCEEEECSSSBEEEEETTTTE---EECC
T ss_pred             EEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEEC-CCCCEEEEEcCCCEEEEEECCCCc---eEEE
Confidence                                0000000    00134588899999999 899999999999999999997543   3355


Q ss_pred             cCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEE
Q psy17342        261 EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLW  340 (401)
Q Consensus       261 ~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iw  340 (401)
                      ..|...|.++.++|+       ..+++++.|+.|++||+.+++.+..+..|...|.+++|+|+++ ++++++.|+.|++|
T Consensus      1041 ~~~~~~v~~~~~~~~-------~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~s~d~~v~iw 1112 (1249)
T 3sfz_A         1041 QAHQETVKDFRLLQD-------SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT-KFSSTSADKTAKIW 1112 (1249)
T ss_dssp             BCCSSCEEEEEECSS-------SEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSS-SCEEECCSSCCCEE
T ss_pred             ecCCCcEEEEEEcCC-------CcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCC-EEEEEcCCCcEEEE
Confidence            689999999999996       5688899999999999999999999999999999999999997 78999999999999


Q ss_pred             eCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        341 NLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       341 d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      |+.++.....+   ..|...|++++|+|+|++|++++.||.|++||+.+++
T Consensus      1113 d~~~~~~~~~l---~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~ 1160 (1249)
T 3sfz_A         1113 SFDLLSPLHEL---KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1160 (1249)
T ss_dssp             CSSSSSCSBCC---CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSC
T ss_pred             ECCCcceeeee---ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence            99988766554   3678889999999999999999999999999999874

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.4e-39  Score=330.96  Aligned_cols=330  Identities=17%  Similarity=0.176  Sum_probs=265.9

Q ss_pred             chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeE
Q psy17342          2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELL   81 (401)
Q Consensus         2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   81 (401)
                      .|..-+..+++|+.||.|++||......+..                        +    ..|...|.+++|+|++++|+
T Consensus       622 ~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~------------------------~----~~h~~~v~~~~~s~~~~~l~  673 (1249)
T 3sfz_A          622 CFSQDGQRIASCGADKTLQVFKAETGEKLLD------------------------I----KAHEDEVLCCAFSSDDSYIA  673 (1249)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEE------------------------E----CCCSSCEEEEEECTTSSEEE
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCCEEEE------------------------e----ccCCCCEEEEEEecCCCEEE
Confidence            4566788999999999999999876551100                        0    14678999999999999999


Q ss_pred             EEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCC-CceEEEEecCCeEEEEECCCCCCCceeecc
Q psy17342         82 LASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFN-PYLILGGTYSGQIVLWDTRVQKKTPVHRTP  160 (401)
Q Consensus        82 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~  160 (401)
                      +++          .|+.|++||+.+++.+..+. .|...|.+++|+|++ ..++++|+.||.|++||+.++...      
T Consensus       674 s~~----------~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~------  736 (1249)
T 3sfz_A          674 TCS----------ADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR------  736 (1249)
T ss_dssp             EEE----------TTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE------
T ss_pred             EEe----------CCCeEEEEECCCCceEEEEc-CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh------
Confidence            999          79999999999877665443 578999999999963 358899999999999999887643      


Q ss_pred             ccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccc----------------------cccc-------
Q psy17342        161 LSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQET----------------------RDLQ-------  211 (401)
Q Consensus       161 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~----------------------~~~~-------  211 (401)
                      ..+.+|.+.|.+++|  +|++..+++++.||.|++||+.........                      ..+.       
T Consensus       737 ~~~~~h~~~v~~~~~--sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  814 (1249)
T 3sfz_A          737 NTMFGHTNSVNHCRF--SPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII  814 (1249)
T ss_dssp             EEECCCSSCEEEEEE--CSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEE
T ss_pred             heecCCCCCEEEEEE--ecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEE
Confidence            234689999999999  899999999999999999998753211000                      0000       


Q ss_pred             ------------------cccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecC
Q psy17342        212 ------------------YNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSH  273 (401)
Q Consensus       212 ------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  273 (401)
                                        .....+|...|.+++|+ +++..+++++.++.|++|+...  ...+..+.+|...|.+++|+
T Consensus       815 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~dg~v~vwd~~~--~~~~~~~~~h~~~v~~v~~s  891 (1249)
T 3sfz_A          815 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS-PYDHLAVIALSQYCVELWNIDS--RLKVADCRGHLSWVHGVMFS  891 (1249)
T ss_dssp             EEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC-SSTTEEEEECSSSCEEEEETTT--TEEEEEECCCSSCEEEEEEC
T ss_pred             EEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc-CCCCEEEEEeCCCeEEEEEcCC--CceeeecCCCccceEEEEEC
Confidence                              00012577889999999 8999999999999999999984  44677889999999999999


Q ss_pred             ccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc-----------------------------eEE--------EeecCCceE
Q psy17342        274 RAQGHIDFSHLYLTSSYDWSVKLWNIKENKP-----------------------------VHS--------FNEFRDYVM  316 (401)
Q Consensus       274 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------------------------~~~--------~~~~~~~v~  316 (401)
                      |+      +.+|++++.|+.|++||+.+...                             +..        ...+...+.
T Consensus       892 pd------g~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  965 (1249)
T 3sfz_A          892 PD------GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVS  965 (1249)
T ss_dssp             TT------SSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEE
T ss_pred             CC------CCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEE
Confidence            98      79999999999999999753210                             011        112345789


Q ss_pred             EEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        317 DVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       317 ~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      +++|+|+++ ++++|+.||.|++||+.+++....   ...|...|++++|+|+|++|++++.||.|++||+.+++
T Consensus       966 ~~~~sp~g~-~l~~g~~~g~i~i~d~~~~~~~~~---~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A          966 CCCLSPHLE-YVAFGDEDGAIKIIELPNNRVFSS---GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp             EEEECTTSS-EEEEEETTSCCEEEETTTTSCEEE---CCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred             EEEEcCCCC-EEEEEcCCCCEEEEEcCCCceeee---cccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence            999999997 899999999999999998765433   24678899999999999999999999999999998874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.8e-39  Score=286.19  Aligned_cols=297  Identities=9%  Similarity=-0.031  Sum_probs=218.3

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCce--------EEE-ecCCCeeEEEEeCCCCceEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE--------FEF-FCQSPVLSCCFAKFNPYLILG  136 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~--------~~~-~~~~~v~~~~~~~~~~~~l~~  136 (401)
                      -+|++++|+|+++.|++|+-+..   ..+-++.|++|++........        ..+ .+...|.++++.+   ..+++
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~---~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~---~~~~~   88 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEG---NNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK---GIILV   88 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSS---SSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET---TEEEE
T ss_pred             CCEEEEEEeCCCcEEEEECCCcc---ccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC---CEEEE
Confidence            57999999999999999882110   001255799999976443221        112 2456788888764   34555


Q ss_pred             E-----------ecCCeEEEEECCCCCCCceee---ccccccCCCCcEEEEEEeecCCceEEEEEe--CCCcEEEeeccC
Q psy17342        137 G-----------TYSGQIVLWDTRVQKKTPVHR---TPLSVMAHTHPVFCMSVIGTQNAHNLISIS--NDGRLCSWSLEM  200 (401)
Q Consensus       137 g-----------~~dg~v~iw~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~~wd~~~  200 (401)
                      |           +.|+.+++|++..........   .......+...+.+++|  +|+|.++++++  .|++|++||+++
T Consensus        89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f--SpDg~~la~as~~~d~~i~iwd~~~  166 (365)
T 4h5i_A           89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYI--SREGTVAAIASSKVPAIMRIIDPSD  166 (365)
T ss_dssp             ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEE--CTTSSCEEEEESCSSCEEEEEETTT
T ss_pred             EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEE--cCCCCEEEEEECCCCCEEEEeECCC
Confidence            4           457789999987654321111   11122345667999999  99999987554  689999999975


Q ss_pred             CCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCC
Q psy17342        201 LSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHID  280 (401)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~  280 (401)
                      ..   ....+      .|...|.+++|+ |+++++++++.++.+.+|... ..........+|...|.+++|+|+     
T Consensus       167 ~~---~~~~~------~~~~~V~~v~fs-pdg~~l~s~s~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~v~fspd-----  230 (365)
T 4h5i_A          167 LT---EKFEI------ETRGEVKDLHFS-TDGKVVAYITGSSLEVISTVT-GSCIARKTDFDKNWSLSKINFIAD-----  230 (365)
T ss_dssp             TE---EEEEE------ECSSCCCEEEEC-TTSSEEEEECSSCEEEEETTT-CCEEEEECCCCTTEEEEEEEEEET-----
T ss_pred             Cc---EEEEe------CCCCceEEEEEc-cCCceEEeccceeEEEEEecc-CcceeeeecCCCCCCEEEEEEcCC-----
Confidence            22   22222      256689999999 899999999876655554443 322223345678999999999999     


Q ss_pred             CCcEEEEEeCCC----eEEEEEeeCCCc----eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceE
Q psy17342        281 FSHLYLTSSYDW----SVKLWNIKENKP----VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATS  352 (401)
Q Consensus       281 ~~~~l~s~~~d~----~i~iwd~~~~~~----~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  352 (401)
                       +.++++++.|+    .+++|++.....    ...+..|...|++++|+|+|+ +||+|+.|+.|+|||+++++.+..+ 
T Consensus       231 -g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs~D~~V~iwd~~~~~~~~~~-  307 (365)
T 4h5i_A          231 -DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE-LAVLASNDNSIALVKLKDLSMSKIF-  307 (365)
T ss_dssp             -TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEE-
T ss_pred             -CCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC-ceEEEcCCCEEEEEECCCCcEEEEe-
Confidence             79999998887    688999876543    345677899999999999997 8999999999999999987644332 


Q ss_pred             EeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        353 AIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       353 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                       ..+|...|++++|+|||++||+|+.|++|+||++...
T Consensus       308 -~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          308 -KQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             -TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             -cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence             2468899999999999999999999999999999764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.9e-38  Score=270.92  Aligned_cols=256  Identities=16%  Similarity=0.195  Sum_probs=203.0

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCC-CceEEEecCCCeeEEEEeCC-CCceEEEEecC
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKT-TPEFEFFCQSPVLSCCFAKF-NPYLILGGTYS  140 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~~l~~g~~d  140 (401)
                      .|.+.|.+++|+|+|++|++++          .|++|+|||+..... .......|.++|.+++|+|+ ...+|++|+.|
T Consensus         7 ~h~~~V~~~~~s~~g~~las~s----------~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D   76 (297)
T 2pm7_B            7 AHNEMIHDAVMDYYGKRMATCS----------SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   76 (297)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEE----------TTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             CCcCceEEEEECCCCCEEEEEe----------CCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC
Confidence            5789999999999999999999          799999999975322 22233458999999999864 24799999999


Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC--ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN--AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      ++|++||++++.....    ..+..|...|.+++|  +|+  +.+|++++.|+.|++||++...... ...     ..+|
T Consensus        77 ~~v~iWd~~~~~~~~~----~~~~~h~~~v~~v~~--~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~-~~~-----~~~h  144 (297)
T 2pm7_B           77 GKVMIWKEENGRWSQI----AVHAVHSASVNSVQW--APHEYGPMLLVASSDGKVSVVEFKENGTTS-PII-----IDAH  144 (297)
T ss_dssp             TEEEEEEBSSSCBCCC----EEECCCSSCEEEEEE--CCGGGCSEEEEEETTSEEEEEEBCSSSCBC-CEE-----EECC
T ss_pred             CEEEEEEcCCCceEEE----EEeecCCCceeEEEe--CcCCCCcEEEEEECCCcEEEEEecCCCcee-eee-----eecc
Confidence            9999999987643222    234679999999999  665  7899999999999999997532211 111     3458


Q ss_pred             ccceEEEEeccC------------CCCeEEEEcCCceEEEEeCCCCCC--CceeeecCCCCceeeeecCccCCCCCCCcE
Q psy17342        219 NLAVLSLAFPQN------------DVNNFVVGCEDGNVYSACRHGNKA--GNVECYEGHEGPVVGLSSHRAQGHIDFSHL  284 (401)
Q Consensus       219 ~~~v~~~~~~~~------------~~~~l~~~~~d~~i~~~~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~  284 (401)
                      ...|.+++|+|.            ++++|++|+.|+.|++||++....  .....+.+|...|.+++|+|+..   .+.+
T Consensus       145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~---~~~~  221 (297)
T 2pm7_B          145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL---LRSY  221 (297)
T ss_dssp             SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS---SSEE
T ss_pred             cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC---CceE
Confidence            889999999942            257899999999999999875331  14567889999999999999720   0379


Q ss_pred             EEEEeCCCeEEEEEeeCCCc--e-EEE--eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        285 YLTSSYDWSVKLWNIKENKP--V-HSF--NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       285 l~s~~~d~~i~iwd~~~~~~--~-~~~--~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      |++++.|++|+|||+++...  . ..+  ..|...|.+++|+|+++ +|++++.|+.|++|+...
T Consensus       222 las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          222 MASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-CEEEEETTSCEEEEEECT
T ss_pred             EEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC-EEEEEcCCCcEEEEEECC
Confidence            99999999999999987431  1 223  45788999999999997 789999999999999864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2e-38  Score=274.70  Aligned_cols=255  Identities=18%  Similarity=0.211  Sum_probs=212.6

Q ss_pred             EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEE
Q psy17342        115 FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLC  194 (401)
Q Consensus       115 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~  194 (401)
                      .+|.+.|++++|+|+++++|++|+.|++|++|++....... ......+.+|...|.+++|  ++++.+|++++.|++|+
T Consensus        14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~-~~~~~~~~~h~~~v~~~~~--s~dg~~l~s~s~D~~v~   90 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF-GVPVRSFKGHSHIVQDCTL--TADGAYALSASWDKTLR   90 (319)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE-EEEEEEEECCSSCEEEEEE--CTTSSEEEEEETTSEEE
T ss_pred             ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc-cccceEEeCCcccEEEEEE--CCCCCEEEEEeCCCEEE
Confidence            35899999999999777899999999999999997543211 1111346799999999999  99999999999999999


Q ss_pred             EeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCc
Q psy17342        195 SWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR  274 (401)
Q Consensus       195 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  274 (401)
                      +||+.+..   ....     +.+|...|.+++|+ +++.++++|+.|+.|++||++.   ..+..+.+|...|.++.+.|
T Consensus        91 ~wd~~~~~---~~~~-----~~~h~~~v~~~~~~-~~~~~l~s~s~D~~i~vwd~~~---~~~~~~~~h~~~v~~~~~~~  158 (319)
T 3frx_A           91 LWDVATGE---TYQR-----FVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTIKG---QCLATLLGHNDWVSQVRVVP  158 (319)
T ss_dssp             EEETTTTE---EEEE-----EECCSSCEEEEEEC-TTSCEEEEEETTSCEEEEETTS---CEEEEECCCSSCEEEEEECC
T ss_pred             EEECCCCC---eeEE-----EccCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECCC---CeEEEEeccCCcEEEEEEcc
Confidence            99997632   1122     34588999999999 8999999999999999999964   35778889999999999998


Q ss_pred             cCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe
Q psy17342        275 AQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAI  354 (401)
Q Consensus       275 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  354 (401)
                      .......+..+++++.|+.|++||+++.+....+.+|...|.+++|+|+++ +|++++.||.|++||+.+++.+..+   
T Consensus       159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~~~~~~~---  234 (319)
T 3frx_A          159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKAMYTL---  234 (319)
T ss_dssp             C------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEEEEEE---
T ss_pred             CCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEe---
Confidence            632111145899999999999999999999999999999999999999997 8999999999999999987654433   


Q ss_pred             ecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        355 VEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       355 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                       .+...|.+++|+|++.+|++++.++ +++|++..+
T Consensus       235 -~~~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~  268 (319)
T 3frx_A          235 -SAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQ  268 (319)
T ss_dssp             -ECCSCEEEEEECSSSSEEEEEETTE-EEEEEETTE
T ss_pred             -cCCCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcC
Confidence             3467899999999999999888665 999999875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.9e-38  Score=289.70  Aligned_cols=289  Identities=13%  Similarity=0.209  Sum_probs=235.8

Q ss_pred             ccccc-eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC
Q psy17342         63 SKNRN-VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG  141 (401)
Q Consensus        63 ~~~~~-v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg  141 (401)
                      .|... +.++.|  ++++|++++          .||.|++||+.+++....+ ..|.+.|.+++|+|++  ++++|+.||
T Consensus       119 ~h~~~v~~~~~~--~~~~l~sgs----------~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~~~~~--~l~s~s~dg  183 (464)
T 3v7d_B          119 GHMTSVITCLQF--EDNYVITGA----------DDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHGG--ILVSGSTDR  183 (464)
T ss_dssp             CCSSSCEEEEEE--ETTEEEEEE----------TTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECSTT--EEEEEETTS
T ss_pred             CCCCCcEEEEEE--CCCEEEEEc----------CCCcEEEEECCCCcEEEEE-eCCCcCEEEEEEcCCC--EEEEEeCCC
Confidence            35555 566666  456899999          8999999999987655433 3578999999999865  899999999


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccc-----------
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDL-----------  210 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-----------  210 (401)
                      .|++||+++++..      ..+.+|...|.+++|.+.+++.++++++.||.|++||++...........           
T Consensus       184 ~i~vwd~~~~~~~------~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  257 (464)
T 3v7d_B          184 TVRVWDIKKGCCT------HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE  257 (464)
T ss_dssp             CEEEEETTTTEEE------EEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred             CEEEEECCCCcEE------EEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence            9999999887643      23568999999999966688899999999999999999864322110000           


Q ss_pred             ----ccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEE
Q psy17342        211 ----QYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL  286 (401)
Q Consensus       211 ----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~  286 (401)
                          ......+|...+.++.   ++++++++|+.|+.|++||+..  .+.+..+.+|...|.+++|+|+      +++++
T Consensus       258 ~~~~~~~~~~~~~~~v~~~~---~~~~~l~~~~~d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~------~~~l~  326 (464)
T 3v7d_B          258 ENPYFVGVLRGHMASVRTVS---GHGNIVVSGSYDNTLIVWDVAQ--MKCLYILSGHTDRIYSTIYDHE------RKRCI  326 (464)
T ss_dssp             GCTTEEEEECCCSSCEEEEE---EETTEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEETT------TTEEE
T ss_pred             CCeEEEEEccCccceEEEEc---CCCCEEEEEeCCCeEEEEECCC--CcEEEEecCCCCCEEEEEEcCC------CCEEE
Confidence                0001345777788774   5689999999999999999984  4467888999999999999998      79999


Q ss_pred             EEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEe
Q psy17342        287 TSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTW  366 (401)
Q Consensus       287 s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  366 (401)
                      +|+.|+.|++||+++++++.++.+|...|.+++|++  . ++++++.||.|++||+.+......    ..+...+..++|
T Consensus       327 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~v~vwd~~~~~~~~~----~~~~~~~~~~~~  399 (464)
T 3v7d_B          327 SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRGWDANDYSRKFS----YHHTNLSAITTF  399 (464)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCCEEEE----EECTTCCCEEEE
T ss_pred             EEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC--C-EEEEEeCCCcEEEEECCCCceeee----ecCCCCccEEEE
Confidence            999999999999999999999999999999999984  3 799999999999999998653322    345667888999


Q ss_pred             cCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        367 TPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       367 s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      ++++++|++|+ ||.|++||+++++
T Consensus       400 ~~~~~~l~~~~-dg~i~iwd~~~g~  423 (464)
T 3v7d_B          400 YVSDNILVSGS-ENQFNIYNLRSGK  423 (464)
T ss_dssp             EECSSEEEEEE-TTEEEEEETTTCC
T ss_pred             EeCCCEEEEec-CCeEEEEECCCCc
Confidence            99999999998 8999999999984

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5.2e-38  Score=275.14  Aligned_cols=286  Identities=15%  Similarity=0.145  Sum_probs=231.9

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCC--CceEEEecCCCeeEEEEeCCCCc-eEEEEec
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKT--TPEFEFFCQSPVLSCCFAKFNPY-LILGGTY  139 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~-~l~~g~~  139 (401)
                      .|.+.|.+++|+|++++|++++          .|+.|++|++.++..  .......|...|++++|+|++ . +|++|+.
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~   77 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITS----------WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTV   77 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEE----------TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEET
T ss_pred             CCCCcEEEEEEcCCCCEEEEEc----------CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC-CcEEEEEcC
Confidence            5889999999999999999999          799999999987651  123345688999999999976 7 8999999


Q ss_pred             CCeEEEEEC-CCCCCCceeeccccccC--CCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccc--ccccccc
Q psy17342        140 SGQIVLWDT-RVQKKTPVHRTPLSVMA--HTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQET--RDLQYNN  214 (401)
Q Consensus       140 dg~v~iw~~-~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~--~~~~~~~  214 (401)
                      ||.|++||+ .+...       ..+..  |...|.+++|  ++ +..|++++.|+.|++||++........  .....  
T Consensus        78 dg~i~~wd~~~~~~~-------~~~~~~~~~~~v~~l~~--~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--  145 (342)
T 1yfq_A           78 QGEILKVDLIGSPSF-------QALTNNEANLGICRICK--YG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN--  145 (342)
T ss_dssp             TSCEEEECSSSSSSE-------EECBSCCCCSCEEEEEE--ET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS--
T ss_pred             CCeEEEEEeccCCce-------EeccccCCCCceEEEEe--CC-CCEEEEEcCCCeEEEEcccccccccccccCCeee--
Confidence            999999999 77653       23456  9999999999  77 899999999999999998741100000  00000  


Q ss_pred             ccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCC-CCCCceeeecCCCCceeeeecCc-cCCCCCCCcEEEEEeCCC
Q psy17342        215 KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHG-NKAGNVECYEGHEGPVVGLSSHR-AQGHIDFSHLYLTSSYDW  292 (401)
Q Consensus       215 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~-~~~~~~~~~~~~~~~v~~i~~~~-~~~~~~~~~~l~s~~~d~  292 (401)
                      ...+...|.+++|+ ++.  +++++.++.|++||++. ...........|...|.+++|+| +      ++++++++.|+
T Consensus       146 ~~~~~~~v~~~~~~-~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~------~~~l~~~~~dg  216 (342)
T 1yfq_A          146 NTKVKNKIFTMDTN-SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE------QEGYACSSIDG  216 (342)
T ss_dssp             SSSSCCCEEEEEEC-SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG------GCEEEEEETTS
T ss_pred             EEeeCCceEEEEec-CCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCC------CCEEEEEecCC
Confidence            11267789999999 555  99999999999999986 43334445567889999999999 8      79999999999


Q ss_pred             eEEEEEeeCC------CceEEEeecCC---------ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecC
Q psy17342        293 SVKLWNIKEN------KPVHSFNEFRD---------YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG  357 (401)
Q Consensus       293 ~i~iwd~~~~------~~~~~~~~~~~---------~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  357 (401)
                      .|++|+++..      +....+..|..         .|.+++|+|+++ +|++++.||.|++||+.+++.+..+   ..|
T Consensus       217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~---~~~  292 (342)
T 1yfq_A          217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTRKKIKNF---AKF  292 (342)
T ss_dssp             EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEEC---CCC
T ss_pred             cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCC-EEEEecCCceEEEEcCccHhHhhhh---hcc
Confidence            9999999887      88888988865         999999999997 7899999999999999987654433   355


Q ss_pred             -CCCeEEEEecCCCcEEEEEecCCc-EEEEE
Q psy17342        358 -APALSRVTWTPNGTQLCVGDEKGA-ITMFD  386 (401)
Q Consensus       358 -~~~v~~~~~s~~g~~l~~~~~dg~-v~iw~  386 (401)
                       ...|++++  |++++|++++.||. .+.|.
T Consensus       293 h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          293 NEDSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             SSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             cCCCceEec--CCCCeEEEEecCCccccccc
Confidence             78899999  99999999999998 44444

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-38  Score=272.87  Aligned_cols=259  Identities=17%  Similarity=0.204  Sum_probs=201.6

Q ss_pred             EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEE
Q psy17342        115 FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLC  194 (401)
Q Consensus       115 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~  194 (401)
                      ..|..+|.+++|+|+   +|++|+.|+.|++||+..+.......  +....|...|.+++|  +|++.+|++++.|++|+
T Consensus        11 ~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~--~~~~~h~~~v~~v~~--sp~~~~las~s~D~~v~   83 (330)
T 2hes_X           11 KLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDV--LDETAHKKAIRSVAW--RPHTSLLAAGSFDSTVS   83 (330)
T ss_dssp             ECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEE--ECTTCCCSCEEEEEE--CTTSSEEEEEETTSCEE
T ss_pred             ccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEE--EecCCccCCEEEEEE--CCCCCEEEEEeCCCcEE
Confidence            357899999999984   89999999999999998754221110  112349999999999  99999999999999999


Q ss_pred             EeeccCCCCCccccc-cccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCC--CCCceeeecCCCCceeeee
Q psy17342        195 SWSLEMLSSPQETRD-LQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGN--KAGNVECYEGHEGPVVGLS  271 (401)
Q Consensus       195 ~wd~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~--~~~~~~~~~~~~~~v~~i~  271 (401)
                      +|+++.......... +..  +.+|...|.+++|+ |++++|++|+.|+.|++||++..  ..+++..+.+|...|.+++
T Consensus        84 iw~~~~~~~~~~~~~~~~~--~~~h~~~V~~v~~s-p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  160 (330)
T 2hes_X           84 IWAKEESADRTFEMDLLAI--IEGHENEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI  160 (330)
T ss_dssp             EEEC-------CCCEEEEE--EC----CEEEEEEC-TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred             EEEcccCcCccccceeEEE--EcCCCCcEEEEEEC-CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence            999864211100111 111  45689999999999 79999999999999999998532  2235677889999999999


Q ss_pred             cCccCCCCCCCcEEEEEeCCCeEEEEEeeCC--CceEEEeecCCceEEEEECCC--CCcEEEEEecCCEEEEEeCCCCCC
Q psy17342        272 SHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN--KPVHSFNEFRDYVMDVQWSPI--NPALFATVEVAGRVDLWNLNLDTE  347 (401)
Q Consensus       272 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~v~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~  347 (401)
                      |+|+      +.+|++++.|++|++||..++  +++..+.+|...|.+++|+|+  +. +|++++.|++|++||+..+..
T Consensus       161 ~~p~------~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~  233 (330)
T 2hes_X          161 WHPS------EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVF-RLCSGSDDSTVRVWKYMGDDE  233 (330)
T ss_dssp             ECSS------SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSC-EEEEEETTSCEEEEEEEEECT
T ss_pred             ECCC------CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCee-EEEEEeCCCeEEEEEecCCCc
Confidence            9998      799999999999999999876  678889999999999999998  54 799999999999999976432


Q ss_pred             Cc----ceE-Ee-ecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        348 VP----ATS-AI-VEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       348 ~~----~~~-~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      ..    ... .. ..|...|.+++|++++ +|++++.||.|++|++.+++
T Consensus       234 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          234 DDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             TSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTE
T ss_pred             cccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc
Confidence            11    111 11 1267889999999765 79999999999999998764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.3e-39  Score=305.04  Aligned_cols=326  Identities=12%  Similarity=0.069  Sum_probs=239.6

Q ss_pred             cccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeecccccccc---ceEEEEecCC-CCCeEEEE
Q psy17342          9 SQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNR---NVTYMDWSTQ-HPELLLAS   84 (401)
Q Consensus         9 ~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~   84 (401)
                      .+++|+.||.+++||......+                        ..+    ..|..   .|.+++|+|+ +++|++++
T Consensus       175 ~l~~~~~d~~v~vwd~~~~~~~------------------------~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~  226 (615)
T 1pgu_A          175 RSMTVGDDGSVVFYQGPPFKFS------------------------ASD----RTHHKQGSFVRDVEFSPDSGEFVITVG  226 (615)
T ss_dssp             EEEEEETTTEEEEEETTTBEEE------------------------EEE----CSSSCTTCCEEEEEECSTTCCEEEEEE
T ss_pred             EEEEEeCCCcEEEEeCCCccee------------------------eee----cccCCCCceEEEEEECCCCCCEEEEEe
Confidence            6999999999999996543310                        001    12445   8999999999 99999999


Q ss_pred             eccCCCCCCCCCcEEEEEeCcCCCCCceEEE---ecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecc-
Q psy17342         85 YHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF---FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP-  160 (401)
Q Consensus        85 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~-  160 (401)
                                .|+.|++||+.+++....+..   .|...|.+++|+ ++ .+|++++.||.|++||+.+++........ 
T Consensus       227 ----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  294 (615)
T 1pgu_A          227 ----------SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLDK  294 (615)
T ss_dssp             ----------TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred             ----------CCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcCCC
Confidence                      799999999987765544423   678999999999 66 78999999999999999865432211100 


Q ss_pred             --------------------------------------ccccCCCCcEEEEEEeec------------------------
Q psy17342        161 --------------------------------------LSVMAHTHPVFCMSVIGT------------------------  178 (401)
Q Consensus       161 --------------------------------------~~~~~~~~~v~~~~~~~~------------------------  178 (401)
                                                            ..+.+|...|.+++| +.                        
T Consensus       295 ~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~  373 (615)
T 1pgu_A          295 QQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSN  373 (615)
T ss_dssp             TCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCS
T ss_pred             CcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccC
Confidence                                                  112234444444333 10                        


Q ss_pred             -------CCceEEEEEeCCCcEEEeeccCCCCCc----------------------ccccc---ccccccCCccceEEEE
Q psy17342        179 -------QNAHNLISISNDGRLCSWSLEMLSSPQ----------------------ETRDL---QYNNKQTKNLAVLSLA  226 (401)
Q Consensus       179 -------~~~~~l~s~~~dg~i~~wd~~~~~~~~----------------------~~~~~---~~~~~~~~~~~v~~~~  226 (401)
                             +++..+++++.|+.+++|++.......                      .....   .......+...+.+++
T Consensus       374 ~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (615)
T 1pgu_A          374 LIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVS  453 (615)
T ss_dssp             CEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred             ceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEE
Confidence                   224456666666666666654311000                      00000   0000012456778888


Q ss_pred             eccCCCCeEEEEcC-CceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCce
Q psy17342        227 FPQNDVNNFVVGCE-DGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPV  305 (401)
Q Consensus       227 ~~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  305 (401)
                      |+   ++++++++. |+.|++|++....... ..+.+|...|.+++|+|+      +++|++++.|+.|++||+.+++++
T Consensus       454 ~~---~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~------g~~l~~~~~dg~i~iw~~~~~~~~  523 (615)
T 1pgu_A          454 LS---QNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPS------ETYIAAGDVMGKILLYDLQSREVK  523 (615)
T ss_dssp             EC---SSEEEEEETTTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTTEEE
T ss_pred             Ec---CCEEEEeecCCCeEEEEECCCccccc-cccCCccCceEEEEECCC------CCEEEEcCCCCeEEEeeCCCCcce
Confidence            87   789999999 9999999997543211 567789999999999999      799999999999999999999999


Q ss_pred             EEEee-cCCceEEEEECC----------CCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEE
Q psy17342        306 HSFNE-FRDYVMDVQWSP----------INPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLC  374 (401)
Q Consensus       306 ~~~~~-~~~~v~~v~~~~----------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  374 (401)
                      ..+.. |...|++++|+|          +++ +|++++.||.|++||+.++..  .+.....|...|++++|+|+++ |+
T Consensus       524 ~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~--~~~~~~~h~~~v~~l~~s~~~~-l~  599 (615)
T 1pgu_A          524 TSRWAFRTSKINAISWKPAEKGANEEEIEED-LVATGSLDTNIFIYSVKRPMK--IIKALNAHKDGVNNLLWETPST-LV  599 (615)
T ss_dssp             ECCSCCCSSCEEEEEECCCC------CCSCC-EEEEEETTSCEEEEESSCTTC--CEEETTSSTTCEEEEEEEETTE-EE
T ss_pred             eEeecCCCCceeEEEEcCccccccccccCCC-EEEEEcCCCcEEEEECCCCce--echhhhcCccceEEEEEcCCCC-eE
Confidence            88888 999999999999          887 899999999999999998631  2222346788999999999999 99


Q ss_pred             EEecCCcEEEEEecc
Q psy17342        375 VGDEKGAITMFDVGE  389 (401)
Q Consensus       375 ~~~~dg~v~iw~~~~  389 (401)
                      +++.||.|++|++..
T Consensus       600 s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          600 SSGADACIKRWNVVL  614 (615)
T ss_dssp             EEETTSCEEEEEEC-
T ss_pred             EecCCceEEEEeeec
Confidence            999999999999975

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.4e-38  Score=284.00  Aligned_cols=311  Identities=20%  Similarity=0.306  Sum_probs=240.0

Q ss_pred             cceEEEEecCCC----------CCeEEEEeccCCCCCCCCCcEEEEEeCc--------------------------CCCC
Q psy17342         66 RNVTYMDWSTQH----------PELLLASYHRNKEAPNEPDGVCLIWNTK--------------------------FKKT  109 (401)
Q Consensus        66 ~~v~~~~~~~~~----------~~l~~~~~~~~~~~~~~~d~~v~iwd~~--------------------------~~~~  109 (401)
                      -+..++.|.|+.          .++++|++..      +..+.|.++++.                          +++.
T Consensus        46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~------~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~  119 (430)
T 2xyi_A           46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTS------DEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKI  119 (430)
T ss_dssp             SCCSCEEECSCCEECTTCSCEEEEEEEECCCS------SSCEEEEEEEEEEC--------------------------CE
T ss_pred             CCceEEEECcccccccCCCcceEEEEEEEcCC------CCCCEEEEEEEECCCCccccccccccccccccccccCCCCce
Confidence            456788888865          3466666421      246677777643                          1112


Q ss_pred             CceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCce----eeccccccCCCCcEEEEEEeecCCce-EE
Q psy17342        110 TPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPV----HRTPLSVMAHTHPVFCMSVIGTQNAH-NL  184 (401)
Q Consensus       110 ~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~-~l  184 (401)
                      .......|.+.|++++|+|+++.+|++++.+|.|++|++......+.    ......+.+|...|.+++|  ++++. +|
T Consensus       120 ~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~l  197 (430)
T 2xyi_A          120 EIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSW--NPNLNGYL  197 (430)
T ss_dssp             EEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEE--CTTSTTEE
T ss_pred             EEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEe--CCCCCCeE
Confidence            22344668999999999997668999999999999999986311110    1112345789999999999  88887 99


Q ss_pred             EEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCC-CCceeeecCC
Q psy17342        185 ISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK-AGNVECYEGH  263 (401)
Q Consensus       185 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-~~~~~~~~~~  263 (401)
                      ++++.||.|++|++.............. ....|...|.+++|+|.++..|++++.|+.|++||++... ...+..+..|
T Consensus       198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  276 (430)
T 2xyi_A          198 LSASDDHTICLWDINATPKEHRVIDAKN-IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH  276 (430)
T ss_dssp             EEECTTSCEEEEETTSCCBGGGEEECSE-EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred             EEEeCCCeEEEEeCCCCCCCCceeccce-eecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence            9999999999999986322211111110 1345888999999995588899999999999999998542 2456677889


Q ss_pred             CCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC-CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeC
Q psy17342        264 EGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE-NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNL  342 (401)
Q Consensus       264 ~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~  342 (401)
                      ...|++++|+|..     ..+|++|+.|+.|++||+++ .+++..+..|...|.+++|+|+++.+|++++.|+.|+|||+
T Consensus       277 ~~~v~~i~~~p~~-----~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~  351 (430)
T 2xyi_A          277 TAEVNCLSFNPYS-----EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL  351 (430)
T ss_dssp             SSCEEEEEECSSC-----TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred             CCCeEEEEeCCCC-----CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence            9999999999984     35899999999999999998 67889999999999999999999778999999999999999


Q ss_pred             CCCCCC-----------cceEEeecCCCCeEEEEecCCCc-EEEEEecCCcEEEEEeccC
Q psy17342        343 NLDTEV-----------PATSAIVEGAPALSRVTWTPNGT-QLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       343 ~~~~~~-----------~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~v~iw~~~~~  390 (401)
                      ......           ..+....+|...|++++|+|+++ +|++++.||.|++|++.+.
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          352 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             GGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            873321           22333345677899999999999 8999999999999999765

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.7e-38  Score=272.54  Aligned_cols=283  Identities=18%  Similarity=0.269  Sum_probs=227.7

Q ss_pred             eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-cCCCeeEEEEeCCCCceEEEEecCCeEEEE
Q psy17342         68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-CQSPVLSCCFAKFNPYLILGGTYSGQIVLW  146 (401)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw  146 (401)
                      .++|+||+++ .|++|.           |++|+|||+++++.+..+..+ |...|++++|+|++ ++|++|+.||.|++|
T Consensus        28 ~~~l~WS~~~-~lAvg~-----------D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw   94 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-----------DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLW   94 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-----------TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred             ceEEEECCCC-EEEEEe-----------CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEe
Confidence            4679999986 555554           999999999998877766554 67789999999977 799999999999999


Q ss_pred             ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEE
Q psy17342        147 DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLA  226 (401)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  226 (401)
                      ++++++..      ..+.+|...+.++.+    ++..+++++.++.+++|+.........  .     ..+|...+..+.
T Consensus        95 ~~~~~~~~------~~~~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~  157 (318)
T 4ggc_A           95 DVQQQKRL------RNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVA--T-----LSGHSQEVCGLR  157 (318)
T ss_dssp             ETTTTEEE------EEEECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEE--E-----EECCSSCEEEEE
T ss_pred             ecCCceeE------EEecCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeEE--E-----EcCccCceEEEE
Confidence            99987654      234689988888766    567899999999999999875322221  1     344788999999


Q ss_pred             eccCCCCeEEEEcCCceEEEEeCCCCCC--CceeeecCCCCceeeeecCccCCCCCCCcEE--EEEeCCCeEEEEEeeCC
Q psy17342        227 FPQNDVNNFVVGCEDGNVYSACRHGNKA--GNVECYEGHEGPVVGLSSHRAQGHIDFSHLY--LTSSYDWSVKLWNIKEN  302 (401)
Q Consensus       227 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l--~s~~~d~~i~iwd~~~~  302 (401)
                      +. ++++++++++.|+.|++||++..+.  ........|.+.|.++.++|..     ...+  ++++.++.|++||.+..
T Consensus       158 ~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~i~lwd~~~~  231 (318)
T 4ggc_A          158 WA-PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ-----SNVLATGGGTSDRHIRIWNVCSG  231 (318)
T ss_dssp             EC-TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTS-----TTEEEEEECTTTCEEEEEETTTC
T ss_pred             Ec-CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCC-----CcEEEEEecCCCCEEEEEecccc
Confidence            99 8999999999999999999975432  2344566788999999999985     4444  45667899999999887


Q ss_pred             CceEEEeecCCceEEEEECCCCCcEEEE-EecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCc
Q psy17342        303 KPVHSFNEFRDYVMDVQWSPINPALFAT-VEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGA  381 (401)
Q Consensus       303 ~~~~~~~~~~~~v~~v~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  381 (401)
                      ....... +...+..+.|+|.++.++++ ++.|+.|++||+++++.+..+   .+|...|++++|+|+|++|++|+.||+
T Consensus       232 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l---~gH~~~V~~l~~spdg~~l~S~s~D~~  307 (318)
T 4ggc_A          232 ACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL---KGHTSRVLSLTMSPDGATVASAAADET  307 (318)
T ss_dssp             CEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred             ccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE---cCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence            7665544 57789999999999854433 347999999999988765544   478899999999999999999999999


Q ss_pred             EEEEEeccC
Q psy17342        382 ITMFDVGEV  390 (401)
Q Consensus       382 v~iw~~~~~  390 (401)
                      |+|||+.+.
T Consensus       308 v~iWd~~~~  316 (318)
T 4ggc_A          308 LRLWRCFEL  316 (318)
T ss_dssp             EEEECCSCC
T ss_pred             EEEEECCCC
Confidence            999999764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6.2e-39  Score=277.45  Aligned_cols=258  Identities=14%  Similarity=0.160  Sum_probs=202.2

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCce-EEEecCCCeeEEEEeCC-CCceEEEEecC
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE-FEFFCQSPVLSCCFAKF-NPYLILGGTYS  140 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~-~~~~l~~g~~d  140 (401)
                      .|.+.|.+++|+|+|++|++++          .|++|+|||+.++..... ....|...|.+++|+|+ ...+|++|+.|
T Consensus        11 ~H~~~V~~v~~s~~g~~lasgs----------~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D   80 (316)
T 3bg1_A           11 SHEDMIHDAQMDYYGTRLATCS----------SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD   80 (316)
T ss_dssp             ---CCEEEEEECGGGCEEEEEE----------TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT
T ss_pred             cccCeEEEeeEcCCCCEEEEEe----------CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC
Confidence            5789999999999999999999          799999999986543222 23358899999999863 24799999999


Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC--ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN--AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      ++|++||++++.....    ..+.+|...|.+++|  +|+  +.+|++++.|++|++||++..........     ..+|
T Consensus        81 ~~v~iWd~~~~~~~~~----~~~~~h~~~V~~v~~--~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~-----~~~h  149 (316)
T 3bg1_A           81 RKVIIWREENGTWEKS----HEHAGHDSSVNSVCW--APHDYGLILACGSSDGAISLLTYTGEGQWEVKKI-----NNAH  149 (316)
T ss_dssp             SCEEEECCSSSCCCEE----EEECCCSSCCCEEEE--CCTTTCSCEEEECSSSCEEEEEECSSSCEEECCB-----TTSS
T ss_pred             CEEEEEECCCCcceEE----EEccCCCCceEEEEE--CCCCCCcEEEEEcCCCCEEEEecCCCCCcceeee-----eccc
Confidence            9999999987643222    234689999999999  666  78999999999999999975321111111     3457


Q ss_pred             ccceEEEEeccCC----------------CCeEEEEcCCceEEEEeCCCCC-CCceeeecCCCCceeeeecCccCCCCCC
Q psy17342        219 NLAVLSLAFPQND----------------VNNFVVGCEDGNVYSACRHGNK-AGNVECYEGHEGPVVGLSSHRAQGHIDF  281 (401)
Q Consensus       219 ~~~v~~~~~~~~~----------------~~~l~~~~~d~~i~~~~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~~  281 (401)
                      ...|.+++|+|..                +.+|++|+.|+.|++||.+... ...+..+.+|...|.+++|+|+... + 
T Consensus       150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~-~-  227 (316)
T 3bg1_A          150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGL-P-  227 (316)
T ss_dssp             SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSC-S-
T ss_pred             cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCC-C-
Confidence            8889999999421                4689999999999999986432 1356678899999999999997200 0 


Q ss_pred             CcEEEEEeCCCeEEEEEeeCC---C-ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        282 SHLYLTSSYDWSVKLWNIKEN---K-PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       282 ~~~l~s~~~d~~i~iwd~~~~---~-~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      +.+|++++.|++|++||+++.   + ....+..|...|.+++|+|+++ +|++++.|+.|++|+...
T Consensus       228 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          228 TSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN-ILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             CCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC-CEEEEESSSCEEEEEECT
T ss_pred             CceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEECC
Confidence            278999999999999999762   1 2345667899999999999997 789999999999999763

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.8e-38  Score=306.64  Aligned_cols=327  Identities=15%  Similarity=0.160  Sum_probs=260.4

Q ss_pred             CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCe
Q psy17342          1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL   80 (401)
Q Consensus         1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   80 (401)
                      |.|..-+..+++|+.+|.|++||......+                        ..+    ..|...|.+++|+|++++|
T Consensus        19 i~~sp~~~~la~~~~~g~v~iwd~~~~~~~------------------------~~~----~~~~~~v~~~~~s~~~~~l   70 (814)
T 3mkq_A           19 IDFHPTEPWVLTTLYSGRVEIWNYETQVEV------------------------RSI----QVTETPVRAGKFIARKNWI   70 (814)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTTTEEE------------------------EEE----ECCSSCEEEEEEEGGGTEE
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCceE------------------------EEE----ecCCCcEEEEEEeCCCCEE
Confidence            356677889999999999999997654411                        011    1466889999999999999


Q ss_pred             EEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecc
Q psy17342         81 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP  160 (401)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~  160 (401)
                      ++++          .||.|++||+.+++....+ ..|...|++++|+|++ .+|++|+.||.|++||+.++....     
T Consensus        71 ~~~~----------~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~-----  133 (814)
T 3mkq_A           71 IVGS----------DDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALE-----  133 (814)
T ss_dssp             EEEE----------TTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEE-----
T ss_pred             EEEe----------CCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEE-----
Confidence            9999          7999999999987765444 3478999999999987 688899999999999998763211     


Q ss_pred             ccccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEecc-CCCCeEEEE
Q psy17342        161 LSVMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQ-NDVNNFVVG  238 (401)
Q Consensus       161 ~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~  238 (401)
                      ..+.+|...|.+++|  +| ++..|++++.||.|++||+.......   .+    ...+...+.+++|+| +++.+++++
T Consensus       134 ~~~~~~~~~v~~~~~--~p~~~~~l~~~~~dg~v~vwd~~~~~~~~---~~----~~~~~~~v~~~~~~~~~~~~~l~~~  204 (814)
T 3mkq_A          134 QTFEGHEHFVMCVAF--NPKDPSTFASGCLDRTVKVWSLGQSTPNF---TL----TTGQERGVNYVDYYPLPDKPYMITA  204 (814)
T ss_dssp             EEEECCSSCEEEEEE--ETTEEEEEEEEETTSEEEEEETTCSSCSE---EE----ECCCTTCCCEEEECCSTTCCEEEEE
T ss_pred             EEEcCCCCcEEEEEE--EcCCCCEEEEEeCCCeEEEEECCCCccee---EE----ecCCCCCEEEEEEEECCCCCEEEEE
Confidence            234689999999999  88 88899999999999999997532211   11    122447899999993 288999999


Q ss_pred             cCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEE
Q psy17342        239 CEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDV  318 (401)
Q Consensus       239 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v  318 (401)
                      +.||.|++||...  ...+..+.+|...|.+++|+|+      ++++++++.||.|++||+.+++.+..+..|...+.++
T Consensus       205 ~~dg~i~~~d~~~--~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~  276 (814)
T 3mkq_A          205 SDDLTIKIWDYQT--KSCVATLEGHMSNVSFAVFHPT------LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI  276 (814)
T ss_dssp             CTTSEEEEEETTT--TEEEEEEECCSSCEEEEEECSS------SSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEE
T ss_pred             eCCCEEEEEECCC--CcEEEEEcCCCCCEEEEEEcCC------CCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEE
Confidence            9999999999874  3467788899999999999998      7899999999999999999999999999999999999


Q ss_pred             EECCCCCcEEEEEecCCEEEEEeCCCCCCCcce----------------------------------------EEeecCC
Q psy17342        319 QWSPINPALFATVEVAGRVDLWNLNLDTEVPAT----------------------------------------SAIVEGA  358 (401)
Q Consensus       319 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----------------------------------------~~~~~~~  358 (401)
                      +|+|++..++++++.++.+.+|++........+                                        .....+.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (814)
T 3mkq_A          277 ATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVD  356 (814)
T ss_dssp             EECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCS
T ss_pred             EEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCc
Confidence            999998765455556888999987654321110                                        0001123


Q ss_pred             CCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        359 PALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       359 ~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      ..+.+++|+|+|++|++++ +|.+.+|++...
T Consensus       357 ~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~  387 (814)
T 3mkq_A          357 VFPQSLAHSPNGRFVTVVG-DGEYVIYTALAW  387 (814)
T ss_dssp             SCCSEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred             cCCceeEECCCCCEEEEec-CCEEEEEECccc
Confidence            4578999999999999888 889999997643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.3e-37  Score=284.11  Aligned_cols=312  Identities=15%  Similarity=0.180  Sum_probs=244.0

Q ss_pred             hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH   86 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   86 (401)
                      ++.+++|+.||.|++||....+.+                        ..+    ..|...|.+++|+|++ .|++++  
T Consensus       132 ~~~l~sgs~dg~i~vwd~~~~~~~------------------------~~~----~~h~~~V~~l~~~~~~-~l~s~s--  180 (464)
T 3v7d_B          132 DNYVITGADDKMIRVYDSINKKFL------------------------LQL----SGHDGGVWALKYAHGG-ILVSGS--  180 (464)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEE------------------------EEE----CCCSSCEEEEEECSTT-EEEEEE--
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEE------------------------EEE----eCCCcCEEEEEEcCCC-EEEEEe--
Confidence            568999999999999997654411                        001    1477899999999988 888888  


Q ss_pred             cCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCC-CCceEEEEecCCeEEEEECCCCCCCceeec------
Q psy17342         87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKF-NPYLILGGTYSGQIVLWDTRVQKKTPVHRT------  159 (401)
Q Consensus        87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~------  159 (401)
                              .|++|++||+++++....+ ..|...|.+++|++. +..++++|+.||.|++||+.+.........      
T Consensus       181 --------~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~  251 (464)
T 3v7d_B          181 --------TDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL  251 (464)
T ss_dssp             --------TTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSE
T ss_pred             --------CCCCEEEEECCCCcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcce
Confidence                    7999999999977654433 347899999999952 337899999999999999987654321100      


Q ss_pred             -----------cccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEec
Q psy17342        160 -----------PLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFP  228 (401)
Q Consensus       160 -----------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  228 (401)
                                 .....+|...|.++.    +++.++++++.||.|++||++..   .....     ..+|...|.+++|+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~~d~~i~vwd~~~~---~~~~~-----~~~~~~~v~~~~~~  319 (464)
T 3v7d_B          252 VFHTPEENPYFVGVLRGHMASVRTVS----GHGNIVVSGSYDNTLIVWDVAQM---KCLYI-----LSGHTDRIYSTIYD  319 (464)
T ss_dssp             EESCGGGCTTEEEEECCCSSCEEEEE----EETTEEEEEETTSCEEEEETTTT---EEEEE-----ECCCSSCEEEEEEE
T ss_pred             EeeccCCCeEEEEEccCccceEEEEc----CCCCEEEEEeCCCeEEEEECCCC---cEEEE-----ecCCCCCEEEEEEc
Confidence                       113467888888875    47889999999999999999752   22222     33488899999999


Q ss_pred             cCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEE
Q psy17342        229 QNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSF  308 (401)
Q Consensus       229 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  308 (401)
                       ++++.+++|+.|+.|++||++.  .+++..+.+|...|.++.++        +.++++++.|+.|++||+++++.....
T Consensus       320 -~~~~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~--------~~~l~s~s~dg~v~vwd~~~~~~~~~~  388 (464)
T 3v7d_B          320 -HERKRCISASMDTTIRIWDLEN--GELMYTLQGHTALVGLLRLS--------DKFLVSAAADGSIRGWDANDYSRKFSY  388 (464)
T ss_dssp             -TTTTEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEC--------SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             -CCCCEEEEEeCCCcEEEEECCC--CcEEEEEeCCCCcEEEEEEc--------CCEEEEEeCCCcEEEEECCCCceeeee
Confidence             7999999999999999999974  44788899999999999997        369999999999999999987766555


Q ss_pred             eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342        309 NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV  387 (401)
Q Consensus       309 ~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~  387 (401)
                      . +...+..++|+|++. ++++++ ||.|++||+++++.+...  ...+...|++++|+ +..++++++.||.+.+|-+
T Consensus       389 ~-~~~~~~~~~~~~~~~-~l~~~~-dg~i~iwd~~~g~~~~~~--~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l  461 (464)
T 3v7d_B          389 H-HTNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSGKLVHAN--ILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL  461 (464)
T ss_dssp             E-CTTCCCEEEEEECSS-EEEEEE-TTEEEEEETTTCCEEESC--TTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             c-CCCCccEEEEEeCCC-EEEEec-CCeEEEEECCCCcEEehh--hccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence            4 567788899999997 788887 999999999998765432  24567889999997 4455666677776655543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.6e-37  Score=271.07  Aligned_cols=314  Identities=13%  Similarity=0.129  Sum_probs=218.0

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceE---EEecCCCeeEEEEeCC-CCceEEEEe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEF---EFFCQSPVLSCCFAKF-NPYLILGGT  138 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~-~~~~l~~g~  138 (401)
                      +|.+.|++++|+|++++|++++          .|+.|++||+.++......   ...|...|++++|+|. +..+|++|+
T Consensus         9 gH~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~   78 (351)
T 3f3f_A            9 GHDDLVHDVVYDFYGRHVATCS----------SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS   78 (351)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEE----------TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE
T ss_pred             ccccceeEEEEcCCCCEEEEee----------CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEc
Confidence            5789999999999999999999          7999999999865433222   2347899999999994 237999999


Q ss_pred             cCCeEEEEECCCCCCCce---eeccccccCCCCcEEEEEEeecCC--ceEEEEEeCCCcEEEeeccCCCCCcccccccc-
Q psy17342        139 YSGQIVLWDTRVQKKTPV---HRTPLSVMAHTHPVFCMSVIGTQN--AHNLISISNDGRLCSWSLEMLSSPQETRDLQY-  212 (401)
Q Consensus       139 ~dg~v~iw~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-  212 (401)
                      .||.|++||++.+.....   ......+..|...|.+++|  +|+  +.+|++++.||.|++||++...... ...... 
T Consensus        79 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~  155 (351)
T 3f3f_A           79 YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKF--APAHLGLKLACLGNDGILRLYDALEPSDLR-SWTLTSE  155 (351)
T ss_dssp             TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEE--CCGGGCSEEEEEETTCEEEEEECSSTTCTT-CCEEEEE
T ss_pred             CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEE--cCCCCCcEEEEecCCCcEEEecCCChHHhc-ccccccc
Confidence            999999999987643210   0112345689999999999  788  9999999999999999998643222 111100 


Q ss_pred             -----ccccCCccceEEEEeccC--CCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCC---
Q psy17342        213 -----NNKQTKNLAVLSLAFPQN--DVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS---  282 (401)
Q Consensus       213 -----~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~---  282 (401)
                           .....+...+.+++|+|.  ++..+++++.++.+.+|+........+..+.+|...|++++|+|+      +   
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~------~~~~  229 (351)
T 3f3f_A          156 MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPS------IGRW  229 (351)
T ss_dssp             EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCC------SSCS
T ss_pred             ccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCC------CCCc
Confidence                 012247788999999943  389999999999998888776554457778899999999999998      5   


Q ss_pred             -cEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEe----cCCEEEEEeCCCCCCCcceEEeecC
Q psy17342        283 -HLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVE----VAGRVDLWNLNLDTEVPATSAIVEG  357 (401)
Q Consensus       283 -~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~  357 (401)
                       ++|++++.|+.|++||++.+........+.........++... .++.+.    ....+.+|+....+   .+.....|
T Consensus       230 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~h  305 (351)
T 3f3f_A          230 YQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVD-MDAQGRSDSNTEEKAELQSNLQVE---LLSEHDDH  305 (351)
T ss_dssp             SEEEEEEETTSCEEEEEEEECC----------------------------------------CCSEEEE---EEEEECTT
T ss_pred             ceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccc-cccccccccccceeeeeccccccc---EEEEEecc
Confidence             7999999999999999998766555444444444444555443 333332    22334444433322   23333467


Q ss_pred             CCCeEEEEecCCCcEEEEEecCCcEEEEEeccC-ccceeeeee
Q psy17342        358 APALSRVTWTPNGTQLCVGDEKGAITMFDVGEV-GIACLKFIT  399 (401)
Q Consensus       358 ~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~-~~~~l~~~~  399 (401)
                      ...|++++|+|++++|++++.||.|++|++.++ .++++..+.
T Consensus       306 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~  348 (351)
T 3f3f_A          306 NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVIT  348 (351)
T ss_dssp             SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEEEEC
T ss_pred             cccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhheeehc
Confidence            889999999999999999999999999999986 345555554

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.1e-37  Score=276.77  Aligned_cols=290  Identities=12%  Similarity=0.135  Sum_probs=228.4

Q ss_pred             ccccceEEEEecC-CCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE------------ecCCCeeEEEEeCC
Q psy17342         63 SKNRNVTYMDWST-QHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF------------FCQSPVLSCCFAKF  129 (401)
Q Consensus        63 ~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~------------~~~~~v~~~~~~~~  129 (401)
                      .|.+.|.+++|+| ++++|++++          .||.|++||+.++........            .|...|.+++|+|+
T Consensus        41 ~h~~~v~~~~~s~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  110 (408)
T 4a11_B           41 IHGGGINTLDIEPVEGRYMLSGG----------SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH  110 (408)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEEE----------TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT
T ss_pred             ccCCcEEEEEEecCCCCEEEEEc----------CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC
Confidence            4778999999999 999999999          799999999998776665542            37889999999996


Q ss_pred             CCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecC---CceEEEEEeCCCcEEEeeccCCCCCcc
Q psy17342        130 NPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ---NAHNLISISNDGRLCSWSLEMLSSPQE  206 (401)
Q Consensus       130 ~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~l~s~~~dg~i~~wd~~~~~~~~~  206 (401)
                      +..+|++++.||.|++||+.+.+....       ..+...+.++.+  .+   ++.++++++.|+.|++||++.... . 
T Consensus       111 ~~~~l~s~~~d~~i~iwd~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~-  179 (408)
T 4a11_B          111 DTGMFTSSSFDKTLKVWDTNTLQTADV-------FNFEETVYSHHM--SPVSTKHCLVAVGTRGPKVQLCDLKSGSC-S-  179 (408)
T ss_dssp             CTTCEEEEETTSEEEEEETTTTEEEEE-------EECSSCEEEEEE--CSSCSSCCEEEEEESSSSEEEEESSSSCC-C-
T ss_pred             CCcEEEEEeCCCeEEEeeCCCCcccee-------ccCCCceeeeEe--ecCCCCCcEEEEEcCCCeEEEEeCCCcce-e-
Confidence            668999999999999999998764322       347788999998  55   455999999999999999986322 1 


Q ss_pred             ccccccccccCCccceEEEEeccCCCC-eEEEEcCCceEEEEeCCCCCCCceee---------------ecCCCCceeee
Q psy17342        207 TRDLQYNNKQTKNLAVLSLAFPQNDVN-NFVVGCEDGNVYSACRHGNKAGNVEC---------------YEGHEGPVVGL  270 (401)
Q Consensus       207 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~---------------~~~~~~~v~~i  270 (401)
                       ..     ...|...|.+++|+ +++. ++++++.||.|++||++.... .+..               +.+|...|.++
T Consensus       180 -~~-----~~~~~~~v~~~~~~-~~~~~ll~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  251 (408)
T 4a11_B          180 -HI-----LQGHRQEILAVSWS-PRYDYILATASADSRVKLWDVRRASG-CLITLDQHNGKKSQAVESANTAHNGKVNGL  251 (408)
T ss_dssp             -EE-----ECCCCSCEEEEEEC-SSCTTEEEEEETTSCEEEEETTCSSC-CSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred             -ee-----ecCCCCcEEEEEEC-CCCCcEEEEEcCCCcEEEEECCCCCc-ccccccccccccceeeccccccccCceeEE
Confidence             12     33478899999999 6666 589999999999999975432 2222               25789999999


Q ss_pred             ecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC-----CceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342        271 SSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR-----DYVMDVQWSPINPALFATVEVAGRVDLWNLNLD  345 (401)
Q Consensus       271 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~  345 (401)
                      +|+|+      +++|++++.|+.|++||+++++....+..+.     ..+. +.+.......++.++.|+.|++||+.++
T Consensus       252 ~~~~~------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~v~d~~~~  324 (408)
T 4a11_B          252 CFTSD------GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLK-FTVSCGCSSEFVFVPYGSTIAVYTVYSG  324 (408)
T ss_dssp             EECTT------SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCC-CEECCSSSSCEEEEEETTEEEEEETTTC
T ss_pred             EEcCC------CCEEEEecCCCeEEEEECCCCccceeccccccccccccce-eEEecCCCceEEEEecCCEEEEEECcCC
Confidence            99998      7999999999999999999887655443321     1111 2222222224667778999999999987


Q ss_pred             CCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        346 TEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       346 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      +.+..+   ..|...|++++|+|++++|++++.||.|++|++.+++
T Consensus       325 ~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          325 EQITML---KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE  367 (408)
T ss_dssp             CEEEEE---CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred             cceeee---ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence            755443   4678899999999999999999999999999999874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1e-37  Score=304.24  Aligned_cols=289  Identities=18%  Similarity=0.235  Sum_probs=241.4

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      .|.+.|.+++|+|++++|++++          .+|.|+|||+.+++....+. .|..+|.+++|+|++ .+|++|+.||.
T Consensus        11 ~h~~~v~~i~~sp~~~~la~~~----------~~g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~-~~l~~~~~dg~   78 (814)
T 3mkq_A           11 NRSDRVKGIDFHPTEPWVLTTL----------YSGRVEIWNYETQVEVRSIQ-VTETPVRAGKFIARK-NWIIVGSDDFR   78 (814)
T ss_dssp             EECSCEEEEEECSSSSEEEEEE----------TTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGG-TEEEEEETTSE
T ss_pred             cCCCceEEEEECCCCCEEEEEe----------CCCEEEEEECCCCceEEEEe-cCCCcEEEEEEeCCC-CEEEEEeCCCe
Confidence            4678999999999999999999          79999999998876655443 578999999999987 78999999999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      |++||+.+++..      ..+.+|.+.|.+++|  +|++.+|++++.||.|++||++.......  .     ..+|...|
T Consensus        79 i~vw~~~~~~~~------~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~~--~-----~~~~~~~v  143 (814)
T 3mkq_A           79 IRVFNYNTGEKV------VDFEAHPDYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWALEQ--T-----FEGHEHFV  143 (814)
T ss_dssp             EEEEETTTCCEE------EEEECCSSCEEEEEE--CSSSSEEEEEETTSEEEEEEGGGTSEEEE--E-----EECCSSCE
T ss_pred             EEEEECCCCcEE------EEEecCCCCEEEEEE--eCCCCEEEEEcCCCEEEEEECCCCceEEE--E-----EcCCCCcE
Confidence            999999887643      234689999999999  99999999999999999999975321111  1     33478899


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC-CCCceeeeecCc--cCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG-HEGPVVGLSSHR--AQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~--~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      .+++|+|.++..+++++.||.|++||+....  ....+.. +...+.+++|+|  +      +.++++++.|+.|++||+
T Consensus       144 ~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~------~~~l~~~~~dg~i~~~d~  215 (814)
T 3mkq_A          144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQST--PNFTLTTGQERGVNYVDYYPLPD------KPYMITASDDLTIKIWDY  215 (814)
T ss_dssp             EEEEEETTEEEEEEEEETTSEEEEEETTCSS--CSEEEECCCTTCCCEEEECCSTT------CCEEEEECTTSEEEEEET
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--ceeEEecCCCCCEEEEEEEECCC------CCEEEEEeCCCEEEEEEC
Confidence            9999994488999999999999999997543  3444444 448999999999  5      789999999999999999


Q ss_pred             eCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcE-EEEEec
Q psy17342        300 KENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQ-LCVGDE  378 (401)
Q Consensus       300 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~  378 (401)
                      ++++++..+..|...|.+++|+|+++ ++++++.||.|++||+.+++....+   ..+...+.+++|+|+|.. +++++.
T Consensus       216 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~  291 (814)
T 3mkq_A          216 QTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTL---NVGLERSWCIATHPTGRKNYIASGF  291 (814)
T ss_dssp             TTTEEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCSEEEEE---CCSSSSEEEEEECTTCGGGEEEEEE
T ss_pred             CCCcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEe---ecCCCcEEEEEEccCCCceEEEEEe
Confidence            99999999999999999999999997 8999999999999999987654433   356678999999999873 244445


Q ss_pred             CCcEEEEEeccC
Q psy17342        379 KGAITMFDVGEV  390 (401)
Q Consensus       379 dg~v~iw~~~~~  390 (401)
                      ++.+.+|++...
T Consensus       292 ~~~~~~~~~~~~  303 (814)
T 3mkq_A          292 DNGFTVLSLGND  303 (814)
T ss_dssp             TTEEEEEECSCC
T ss_pred             CCCEEEEEcCCC
Confidence            666999998765

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=8.7e-38  Score=276.35  Aligned_cols=290  Identities=15%  Similarity=0.180  Sum_probs=226.1

Q ss_pred             ccccceEEEEecCC---CCCeEEEEeccCCCCCCCCCcEEEEEeCcC-CCCCceEEEecCCCeeEEEEeCCCCceEEEEe
Q psy17342         63 SKNRNVTYMDWSTQ---HPELLLASYHRNKEAPNEPDGVCLIWNTKF-KKTTPEFEFFCQSPVLSCCFAKFNPYLILGGT  138 (401)
Q Consensus        63 ~~~~~v~~~~~~~~---~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~  138 (401)
                      .|.+.|++++|+|+   |++|++++          .|+.|++||+.+ +.........|...|++++|+|++ .+|++|+
T Consensus        37 ~h~~~v~~~~~~~~~~~g~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~  105 (368)
T 3mmy_A           37 SPDDSIGCLSFSPPTLPGNFLIAGS----------WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG-SKVFTAS  105 (368)
T ss_dssp             CCSSCEEEEEECCTTSSSEEEEEEE----------TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS-SEEEEEE
T ss_pred             CCCCceEEEEEcCCCCCceEEEEEC----------CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC-CEEEEEc
Confidence            57799999999999   58999999          799999999987 444434555689999999999976 7899999


Q ss_pred             cCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342        139 YSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       139 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      .||.|++||+.+.+..       ....|...|.+++|.+++++.+|++++.||.|++||++... ......        .
T Consensus       106 ~dg~v~iwd~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~--------~  169 (368)
T 3mmy_A          106 CDKTAKMWDLSSNQAI-------QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-PMMVLQ--------L  169 (368)
T ss_dssp             TTSEEEEEETTTTEEE-------EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-CSEEEE--------C
T ss_pred             CCCcEEEEEcCCCCce-------eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-EEEEEe--------c
Confidence            9999999999887642       23579999999999778899999999999999999998632 222221        2


Q ss_pred             ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      ...+.++.+.   ...+++++.++.+++|+++............+...+.++.+.+....  ....+++++.|+.|++||
T Consensus       170 ~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~dg~i~i~~  244 (368)
T 3mmy_A          170 PERCYCADVI---YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN--KPTGFALGSIEGRVAIHY  244 (368)
T ss_dssp             SSCEEEEEEE---TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS--CEEEEEEEETTSEEEEEE
T ss_pred             CCCceEEEec---CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC--CCCeEEEecCCCcEEEEe
Confidence            2356677766   35888999999999999985443222222234445555555544200  023499999999999999


Q ss_pred             eeCC---CceEEEeecCC------------ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEE
Q psy17342        299 IKEN---KPVHSFNEFRD------------YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSR  363 (401)
Q Consensus       299 ~~~~---~~~~~~~~~~~------------~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  363 (401)
                      ++..   +.+..+..|..            .|.+++|+|+++ +|++++.||.|++||+.+++.+..+   ..|...|++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~  320 (368)
T 3mmy_A          245 INPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKDARTKLKTS---EQLDQPISA  320 (368)
T ss_dssp             SSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEEC---CCCSSCEEE
T ss_pred             cCCCCccccceeeeeeecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECCCCcEEEEe---cCCCCCceE
Confidence            9887   56777887765            799999999997 7899999999999999987654433   367889999


Q ss_pred             EEecCCCcEEEEEecCCcEEEEEec
Q psy17342        364 VTWTPNGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       364 ~~~s~~g~~l~~~~~dg~v~iw~~~  388 (401)
                      ++|+|+|++|++++.|+..+.|++.
T Consensus       321 ~~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          321 CCFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             EEECTTSSCEEEEECCCSTTCGGGC
T ss_pred             EEECCCCCeEEEEeccccccccccc
Confidence            9999999999999998865555543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.4e-37  Score=271.53  Aligned_cols=261  Identities=17%  Similarity=0.227  Sum_probs=211.1

Q ss_pred             EEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC--ceEEEEEeCCC
Q psy17342        114 EFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN--AHNLISISNDG  191 (401)
Q Consensus       114 ~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg  191 (401)
                      ...|...|++++|+|++ .+|++|+.||.|++|++........    ..+.+|...|.+++|  +++  +.+|++++.||
T Consensus         7 ~~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~----~~~~~h~~~v~~~~~--~~~~~~~~l~s~~~dg   79 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLI----DTLTGHEGPVWRVDW--AHPKFGTILASCSYDG   79 (379)
T ss_dssp             EEECCCCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEE----EEECCCSSCEEEEEE--CCGGGCSEEEEEETTS
T ss_pred             ecCCcccEEEEEEcCCC-CEEEEEECCCcEEEEecCCCcceee----eEecCCCCcEEEEEe--CCCCCCCEEEEeccCC
Confidence            34679999999999987 7899999999999999974332221    235789999999999  555  89999999999


Q ss_pred             cEEEeeccCCCCCccccccccccccCCccceEEEEeccCC--CCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceee
Q psy17342        192 RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQND--VNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVG  269 (401)
Q Consensus       192 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~  269 (401)
                      .|++||++... ......     ...|...|.+++|+ ++  +.++++++.|+.|++||++.........+.+|...|.+
T Consensus        80 ~v~iwd~~~~~-~~~~~~-----~~~~~~~v~~~~~~-~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~  152 (379)
T 3jrp_A           80 KVLIWKEENGR-WSQIAV-----HAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS  152 (379)
T ss_dssp             CEEEEEEETTE-EEEEEE-----ECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEE
T ss_pred             EEEEEEcCCCc-eeEeee-----ecCCCcceEEEEeC-CCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEE
Confidence            99999998521 111222     33478899999999 67  89999999999999999987655556677889999999


Q ss_pred             eecCccCCC--------CCCCcEEEEEeCCCeEEEEEeeCCCc----eEEEeecCCceEEEEECCC---CCcEEEEEecC
Q psy17342        270 LSSHRAQGH--------IDFSHLYLTSSYDWSVKLWNIKENKP----VHSFNEFRDYVMDVQWSPI---NPALFATVEVA  334 (401)
Q Consensus       270 i~~~~~~~~--------~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~v~~~~~---~~~~l~~~~~d  334 (401)
                      ++|+|....        ++ +.+|++++.|+.|++||+++++.    +..+..|...|.+++|+|+   +. +|++++.|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d  230 (379)
T 3jrp_A          153 ASWAPATIEEDGEHNGTKE-SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQD  230 (379)
T ss_dssp             EEECCCC----------CT-TCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEETT
T ss_pred             EEEcCccccccccccCCCC-CCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC-eEEEEeCC
Confidence            999993000        00 68999999999999999988653    4567779999999999999   65 89999999


Q ss_pred             CEEEEEeCCCCCCCcceEEe--ecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        335 GRVDLWNLNLDTEVPATSAI--VEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       335 ~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      |.|++||++++.........  ..+...|++++|+|+|++|++++.||.|++|++..+
T Consensus       231 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          231 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            99999999987543332222  236778999999999999999999999999999854

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=6.9e-37  Score=275.49  Aligned_cols=286  Identities=15%  Similarity=0.194  Sum_probs=225.0

Q ss_pred             CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCe
Q psy17342          1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL   80 (401)
Q Consensus         1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   80 (401)
                      |||.. .+.|++| .|++|+|||...++.+.                        .+.  ...|...|++++|+|+|++|
T Consensus       111 l~wS~-~n~lAvg-ld~tV~lWd~~tg~~~~------------------------~~~--~~~~~~~V~sv~fspdg~~l  162 (420)
T 4gga_A          111 VDWSS-GNVLAVA-LDNSVYLWSASSGDILQ------------------------LLQ--MEQPGEYISSVAWIKEGNYL  162 (420)
T ss_dssp             EEECT-TSEEEEE-ETTEEEEEETTTCCEEE------------------------EEE--CCSTTCCEEEEEECTTSSEE
T ss_pred             EEECC-CCEEEEE-eCCEEEEEECCCCCEEE------------------------EEE--ecCCCCcEEEEEECCCCCEE
Confidence            57864 5666665 69999999987665110                        000  11456789999999999999


Q ss_pred             EEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecc
Q psy17342         81 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP  160 (401)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~  160 (401)
                      ++|+          .|+.|+|||+++++.+..+ ..|...+.++++++   .+|++|+.|+.+++||........     
T Consensus       163 asgs----------~Dg~v~iWd~~~~~~~~~~-~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~-----  223 (420)
T 4gga_A          163 AVGT----------SSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHV-----  223 (420)
T ss_dssp             EEEE----------TTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEE-----
T ss_pred             EEEE----------CCCeEEEEEcCCCcEEEEE-eCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceee-----
Confidence            9999          8999999999987665443 35788899988863   689999999999999988755321     


Q ss_pred             ccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEE--E
Q psy17342        161 LSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV--G  238 (401)
Q Consensus       161 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~  238 (401)
                      ..+.+|...+..+.|  .+++.++++++.|+.+++|+............  .  ...+...|.+++|+|.+...+++  |
T Consensus       224 ~~~~~h~~~~~~~~~--~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~--~--~~~~~~~V~~~~~~p~~~~~la~~~g  297 (420)
T 4gga_A          224 ATLSGHSQEVCGLRW--APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ--T--FTQHQGAVKAVAWCPWQSNVLATGGG  297 (420)
T ss_dssp             EEEECCSSCEEEEEE--CTTSSEEEEEETTSCEEEEESSCCSSCSCCSE--E--ECCCSSCEEEEEECTTCTTEEEEEEC
T ss_pred             EEecccccceeeeee--cCCCCeeeeeeccccceEEeeccccccceeee--e--ecccCCceeeeeeCCCcccEEEEEee
Confidence            235789999999999  99999999999999999999976432222111  1  34478899999999666677665  4


Q ss_pred             cCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe--CCCeEEEEEeeCCCceEEEeecCCceE
Q psy17342        239 CEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS--YDWSVKLWNIKENKPVHSFNEFRDYVM  316 (401)
Q Consensus       239 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~  316 (401)
                      +.|+.|++||+...  .+...+. +...+.++.|+|.      +..+++++  .|+.|+|||+.+++++.++.+|.+.|+
T Consensus       298 s~D~~I~iwd~~t~--~~~~~~~-~~~~v~~~~~~~~------~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~  368 (420)
T 4gga_A          298 TSDRHIRIWNVCSG--ACLSAVD-AHSQVCSILWSPH------YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL  368 (420)
T ss_dssp             TTTCEEEEEETTTT--EEEEEEE-CSSCEEEEEEETT------TTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             cCCCEEEEEeCCcc--ccceeec-cccceeeeeecCC------CCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence            68999999999844  3555555 4467889999998      56666654  699999999999999999999999999


Q ss_pred             EEEECCCCCcEEEEEecCCEEEEEeCCCCCCCc
Q psy17342        317 DVQWSPINPALFATVEVAGRVDLWNLNLDTEVP  349 (401)
Q Consensus       317 ~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  349 (401)
                      +++|+|+|. +|++|+.|++|+|||+.......
T Consensus       369 ~l~~spdg~-~l~S~s~D~tvriWdv~~~~~~~  400 (420)
T 4gga_A          369 SLTMSPDGA-TVASAAADETLRLWRCFELDPAR  400 (420)
T ss_dssp             EEEECTTSS-CEEEEETTTEEEEECCSCSSCC-
T ss_pred             EEEEcCCCC-EEEEEecCCeEEEEECCCCCccc
Confidence            999999997 79999999999999998655433

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.5e-37  Score=279.71  Aligned_cols=280  Identities=15%  Similarity=0.272  Sum_probs=228.4

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      .|...|.+++|  +++.|++++          .||.|++||+.+++....+ ..|...|.+++|  ++ .+|++|+.||.
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~----------~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~--~~-~~l~sg~~dg~  194 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGL----------RDNTIKIWDKNTLECKRIL-TGHTGSVLCLQY--DE-RVIITGSSDST  194 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEE----------SSSCEEEEESSSCCEEEEE-CCCSSCEEEEEC--CS-SEEEEEETTSC
T ss_pred             CCCCcEEEEEE--CCCEEEEEe----------CCCeEEEEeCCCCeEEEEE-cCCCCcEEEEEE--CC-CEEEEEcCCCe
Confidence            45678999887  788999999          7999999999977655433 357889999999  34 79999999999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      |++||+.+++..      ..+..|...|.+++|  +  +..+++++.||.|++||++..........     ..+|...|
T Consensus       195 i~vwd~~~~~~~------~~~~~h~~~v~~l~~--~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~v  259 (435)
T 1p22_A          195 VRVWDVNTGEML------NTLIHHCEAVLHLRF--N--NGMMVTCSKDRSIAVWDMASPTDITLRRV-----LVGHRAAV  259 (435)
T ss_dssp             EEEEESSSCCEE------EEECCCCSCEEEEEC--C--TTEEEEEETTSCEEEEECSSSSCCEEEEE-----ECCCSSCE
T ss_pred             EEEEECCCCcEE------EEEcCCCCcEEEEEE--c--CCEEEEeeCCCcEEEEeCCCCCCceeeeE-----ecCCCCcE
Confidence            999999987643      234689999999998  4  45999999999999999986332221112     34588899


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN  302 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  302 (401)
                      .++++   +++++++|+.||.|++||++.  ...+..+.+|...|.++.++        +.++++|+.|+.|++||++++
T Consensus       260 ~~~~~---~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~--------~~~l~~g~~dg~i~iwd~~~~  326 (435)
T 1p22_A          260 NVVDF---DDKYIVSASGDRTIKVWNTST--CEFVRTLNGHKRGIACLQYR--------DRLVVSGSSDNTIRLWDIECG  326 (435)
T ss_dssp             EEEEE---ETTEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEEE--------TTEEEEEETTSCEEEEETTTC
T ss_pred             EEEEe---CCCEEEEEeCCCeEEEEECCc--CcEEEEEcCCCCcEEEEEeC--------CCEEEEEeCCCeEEEEECCCC
Confidence            99998   478999999999999999984  45688889999999999984        579999999999999999999


Q ss_pred             CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCc------ceEEeecCCCCeEEEEecCCCcEEEEE
Q psy17342        303 KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVP------ATSAIVEGAPALSRVTWTPNGTQLCVG  376 (401)
Q Consensus       303 ~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------~~~~~~~~~~~v~~~~~s~~g~~l~~~  376 (401)
                      +++..+.+|...|.+++|  ++. ++++|+.||.|++||+.++....      .......|...|++++|  ++++|+++
T Consensus       327 ~~~~~~~~h~~~v~~~~~--~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~  401 (435)
T 1p22_A          327 ACLRVLEGHEELVRCIRF--DNK-RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSS  401 (435)
T ss_dssp             CEEEEECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEEC
T ss_pred             CEEEEEeCCcCcEEEEEe--cCC-EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEE
Confidence            999999999999999999  454 79999999999999997654211      23334577889999999  78899999


Q ss_pred             ecCCcEEEEEeccCc
Q psy17342        377 DEKGAITMFDVGEVG  391 (401)
Q Consensus       377 ~~dg~v~iw~~~~~~  391 (401)
                      +.||.|++||+.+..
T Consensus       402 s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          402 SHDDTILIWDFLNDP  416 (435)
T ss_dssp             CSSSEEEEEC-----
T ss_pred             eCCCEEEEEECCCCC
Confidence            999999999998864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5e-37  Score=268.65  Aligned_cols=280  Identities=17%  Similarity=0.171  Sum_probs=220.2

Q ss_pred             hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH   86 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   86 (401)
                      ++.++||+.||+|+|||+.........                   ..+.+    ..|...|.+++|+|++++|++++  
T Consensus        51 ~~~l~S~s~D~~i~vWd~~~~~~~~~~-------------------~~~~l----~~h~~~V~~~~~s~dg~~l~s~~--  105 (340)
T 4aow_A           51 PDMILSASRDKTIIMWKLTRDETNYGI-------------------PQRAL----RGHSHFVSDVVISSDGQFALSGS--  105 (340)
T ss_dssp             TTEEEEEETTSCEEEEEECCSSSCSEE-------------------EEEEE----CCCSSCEEEEEECTTSSEEEEEE--
T ss_pred             CCEEEEEcCCCeEEEEECCCCCcccce-------------------eeEEE----eCCCCCEEEEEECCCCCEEEEEc--
Confidence            578999999999999998765421111                   00111    24678999999999999999999  


Q ss_pred             cCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCC
Q psy17342         87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH  166 (401)
Q Consensus        87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  166 (401)
                              .|+.|++|+........ ....+...+..+.+++++ .+|++|+.|+.+++||.......     .....+|
T Consensus       106 --------~d~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~-----~~~~~~~  170 (340)
T 4aow_A          106 --------WDGTLRLWDLTTGTTTR-RFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKY-----TVQDESH  170 (340)
T ss_dssp             --------TTSEEEEEETTTTEEEE-EEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEE-----EECSSSC
T ss_pred             --------ccccceEEeecccceee-eecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceE-----EEEeccc
Confidence                    79999999998654433 333457788999999976 78899999999999998765432     1234689


Q ss_pred             CCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEE
Q psy17342        167 THPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYS  246 (401)
Q Consensus       167 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~  246 (401)
                      ...+..++|.+.+....+++++.|+.|++||++...   ....     ..+|...|++++|+ |++++|++|+.|+.|++
T Consensus       171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~---~~~~-----~~~h~~~v~~~~~s-~~~~~l~s~s~Dg~i~i  241 (340)
T 4aow_A          171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK---LKTN-----HIGHTGYLNTVTVS-PDGSLCASGGKDGQAML  241 (340)
T ss_dssp             SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE---EEEE-----ECCCSSCEEEEEEC-TTSSEEEEEETTCEEEE
T ss_pred             cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc---eeeE-----ecCCCCcEEEEEEC-CCCCEEEEEeCCCeEEE
Confidence            999999999555556788999999999999997522   1222     34588899999999 89999999999999999


Q ss_pred             EeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEe---------ecCCceEE
Q psy17342        247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN---------EFRDYVMD  317 (401)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~~v~~  317 (401)
                      ||++..  ..+..+. +...|.++.|+|+       ..+++++.|+.|++||++++..+..+.         .|...|++
T Consensus       242 wd~~~~--~~~~~~~-~~~~v~~~~~~~~-------~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~  311 (340)
T 4aow_A          242 WDLNEG--KHLYTLD-GGDIINALCFSPN-------RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTS  311 (340)
T ss_dssp             EETTTT--EEEEEEE-CSSCEEEEEECSS-------SSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEE
T ss_pred             EEeccC--ceeeeec-CCceEEeeecCCC-------CceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEE
Confidence            999843  3556665 4568999999996       455666779999999998876665543         57889999


Q ss_pred             EEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342        318 VQWSPINPALFATVEVAGRVDLWNLNLDT  346 (401)
Q Consensus       318 v~~~~~~~~~l~~~~~d~~i~iwd~~~~~  346 (401)
                      ++|+|+++ +|++|+.||.|+|||+++++
T Consensus       312 l~~s~dg~-~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          312 LAWSADGQ-TLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEECTTSS-EEEEEETTSCEEEEEEEC--
T ss_pred             EEECCCCC-EEEEEeCCCEEEEEeCCCcC
Confidence            99999997 89999999999999999875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.6e-37  Score=277.84  Aligned_cols=286  Identities=12%  Similarity=0.142  Sum_probs=225.4

Q ss_pred             ccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCC----C---CCe
Q psy17342          8 ESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQ----H---PEL   80 (401)
Q Consensus         8 ~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~---~~l   80 (401)
                      ..+++|+.||.+++|+.........                  ......+.    .|...|.+++|+|+    +   ++|
T Consensus        27 ~~l~s~~~dg~i~iw~~~~~~~~~~------------------~~~~~~~~----~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A           27 SFTVSCSGDGYLKVWDNKLLDNENP------------------KDKSYSHF----VHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             SEEEEEETTSEEEEEESBCCTTCCG------------------GGGEEEEE----CCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             CeEEEEcCCCEEEEEECCCcccccC------------------CCcceEEe----cCCCcEEEEEEecccccCCccccEE
Confidence            7899999999999999876652111                  11111111    46688999999999    9   999


Q ss_pred             EEEEeccCCCCCCCCCcEEEEEeCcCCCC-----CceEEEec-----CCCeeEEEEe----CCCCce-EEEEecCCeEEE
Q psy17342         81 LLASYHRNKEAPNEPDGVCLIWNTKFKKT-----TPEFEFFC-----QSPVLSCCFA----KFNPYL-ILGGTYSGQIVL  145 (401)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~-----~~~~~~~~-----~~~v~~~~~~----~~~~~~-l~~g~~dg~v~i  145 (401)
                      ++++          .|+.|++||+.+++.     ...+ ..|     ...|.+++|+    |++ .+ |++|+.||.|++
T Consensus        85 ~s~~----------~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~i  152 (397)
T 1sq9_A           85 ATTS----------FSGDLLFYRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYI  152 (397)
T ss_dssp             EEEE----------TTSCEEEEEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEE
T ss_pred             EEEc----------CCCCEEEEEccCCcccccccceee-cccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEE
Confidence            9999          799999999997665     3222 234     4899999999    877 56 999999999999


Q ss_pred             EECCC------CCCCceeeccccc-------cCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccc
Q psy17342        146 WDTRV------QKKTPVHRTPLSV-------MAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY  212 (401)
Q Consensus       146 w~~~~------~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~  212 (401)
                      ||+..      ........ ...+       ..|...|.+++|  ++++ .+++++.||.|++||++... +...+..  
T Consensus       153 wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~--~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~--  225 (397)
T 1sq9_A          153 WKFHPFADESNSLTLNWSP-TLELQGTVESPMTPSQFATSVDI--SERG-LIATGFNNGTVQISELSTLR-PLYNFES--  225 (397)
T ss_dssp             EEEESSSSHHHHTTTCCCC-EEEEEEEECCSSSSCCCCCEEEE--CTTS-EEEEECTTSEEEEEETTTTE-EEEEEEC--
T ss_pred             EeCCccccccccceeeccC-cceeeeeeccccCCCCCceEEEE--CCCc-eEEEEeCCCcEEEEECCCCc-eeEEEec--
Confidence            99987      44332000 0022       458899999999  8999 99999999999999997521 1111111  


Q ss_pred             ccccCC---ccceEEEEeccCCCCeEEEEcCC---ceEEEEeCCCCCCCceeeecC-------------CCCceeeeecC
Q psy17342        213 NNKQTK---NLAVLSLAFPQNDVNNFVVGCED---GNVYSACRHGNKAGNVECYEG-------------HEGPVVGLSSH  273 (401)
Q Consensus       213 ~~~~~~---~~~v~~~~~~~~~~~~l~~~~~d---~~i~~~~~~~~~~~~~~~~~~-------------~~~~v~~i~~~  273 (401)
                        ...|   ...|.+++|+ +++.+|++++.|   +.|++||++..  +.+..+.+             |...|.+++|+
T Consensus       226 --~~~h~~~~~~i~~i~~~-~~~~~l~~~~~d~~~g~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  300 (397)
T 1sq9_A          226 --QHSMINNSNSIRSVKFS-PQGSLLAIAHDSNSFGCITLYETEFG--ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN  300 (397)
T ss_dssp             --CC---CCCCCEEEEEEC-SSTTEEEEEEEETTEEEEEEEETTTC--CEEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred             --cccccccCCccceEEEC-CCCCEEEEEecCCCCceEEEEECCCC--cccceeccCcccccccccccccCCcEEEEEEC
Confidence              1115   7899999999 789999999999   99999999843  46778888             99999999999


Q ss_pred             ccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEe------ec---------------CCceEEEEECCCCC-------
Q psy17342        274 RAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN------EF---------------RDYVMDVQWSPINP-------  325 (401)
Q Consensus       274 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~~---------------~~~v~~v~~~~~~~-------  325 (401)
                      |+      +++|++++.|+.|++||+++++++..+.      .|               ...|.+++|+|+++       
T Consensus       301 ~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~  374 (397)
T 1sq9_A          301 DS------GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGAD  374 (397)
T ss_dssp             SS------SSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCT
T ss_pred             CC------CCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccc
Confidence            98      7999999999999999999999999999      77               89999999999982       


Q ss_pred             --cEEEEEecCCEEEEEeCCCC
Q psy17342        326 --ALFATVEVAGRVDLWNLNLD  345 (401)
Q Consensus       326 --~~l~~~~~d~~i~iwd~~~~  345 (401)
                        .+|++++.||.|++||+.++
T Consensus       375 ~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          375 LNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             TSCEEEEEETTTEEEEEEEEC-
T ss_pred             ccceEEEecCCCcEEEEEcCCC
Confidence              38999999999999999875

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-37  Score=284.03  Aligned_cols=280  Identities=12%  Similarity=0.100  Sum_probs=202.5

Q ss_pred             hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCC------CCCe
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQ------HPEL   80 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l   80 (401)
                      +..+++|+.||.|+||++......                    ......+    ..|.+.|.+++|+|+      +.+|
T Consensus       173 ~~~laS~s~D~tI~iWd~~~~~~~--------------------~~~~~~l----~~~~~~V~~v~wsp~~~~~~~~~~L  228 (524)
T 2j04_B          173 LEMFDKEKHSSCIQIFKMNTSTLH--------------------CVKVQTI----VHSFGEVWDLKWHEGCHAPHLVGCL  228 (524)
T ss_dssp             ---------CEEEEEEEEETTTCC--------------------EEEEEEE----EECCCSEEEEEECSSCCCSSSSCEE
T ss_pred             hhhhccCCCCceEEEEEccCCCCC--------------------ceEEEEE----EecCCcEEEEEECCCCCCCCCCceE
Confidence            345678889999999998654410                    0000001    124578999999997      4678


Q ss_pred             EEEEeccCCCCCCCCCcEEEEEeCcCCCCC---------ceEE-EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC
Q psy17342         81 LLASYHRNKEAPNEPDGVCLIWNTKFKKTT---------PEFE-FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV  150 (401)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~---------~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~  150 (401)
                      |+++          .|++|+|||+.++...         +... ..|...|++++|+|+  ..|++|+.||+|++||+++
T Consensus       229 As~s----------~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~  296 (524)
T 2j04_B          229 SFVS----------QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTD  296 (524)
T ss_dssp             EEEE----------TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEEEEEETTSEEEEEETTB
T ss_pred             EEEe----------cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEEEEEECCC
Confidence            8888          7999999999865432         1122 347789999999984  4799999999999999987


Q ss_pred             CCCCceeeccccccCCCCcEEEEEEeecCCc-eEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc--cceEEEEe
Q psy17342        151 QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNA-HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN--LAVLSLAF  227 (401)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~  227 (401)
                      +... .    ..+.+|...|.++++.+++++ .+|++++.|++|++||++....   ...+.     +|.  ..|.+++|
T Consensus       297 ~~~~-~----~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~---~~~~~-----~~~~~~~v~~v~f  363 (524)
T 2j04_B          297 PEVP-S----FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT---TKTTV-----SRFRGSNLVPVVY  363 (524)
T ss_dssp             CSSC-S----EEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH---HCEEE-----EECSCCSCCCEEE
T ss_pred             CCCc-e----EEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc---ccccc-----cccccCcccceEe
Confidence            6421 1    224789999999953337877 8999999999999999975221   11111     122  24789999


Q ss_pred             ccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC-----
Q psy17342        228 PQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN-----  302 (401)
Q Consensus       228 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----  302 (401)
                      + |++..+++++.|+.|++||++..  .++..+.+|.+.|++++|+|+      +++|++|+.|++|++||+..+     
T Consensus       364 s-p~~~~l~s~~~d~tv~lwd~~~~--~~~~~l~gH~~~V~sva~Sp~------g~~l~Sgs~Dgtv~lwd~~~~~~~~~  434 (524)
T 2j04_B          364 C-PQIYSYIYSDGASSLRAVPSRAA--FAVHPLVSRETTITAIGVSRL------HPMVLAGSADGSLIITNAARRLLHGI  434 (524)
T ss_dssp             E-TTTTEEEEECSSSEEEEEETTCT--TCCEEEEECSSCEEEEECCSS------CCBCEEEETTTEEECCBSCSSTTTCC
T ss_pred             C-CCcCeEEEeCCCCcEEEEECccc--ccceeeecCCCceEEEEeCCC------CCeEEEEECCCEEEEEechHhhcccc
Confidence            9 78889999999999999999843  356778899999999999998      789999999999999985321     


Q ss_pred             ---------------------------------------CceEEEeecCCceEEEEECCCCC--cEEEEEecCCEEEEEe
Q psy17342        303 ---------------------------------------KPVHSFNEFRDYVMDVQWSPINP--ALFATVEVAGRVDLWN  341 (401)
Q Consensus       303 ---------------------------------------~~~~~~~~~~~~v~~v~~~~~~~--~~l~~~~~d~~i~iwd  341 (401)
                                                             ..+.++.+|...|.+|+|+|+++  .++|+|+.||.|+||+
T Consensus       435 ~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~  514 (524)
T 2j04_B          435 KNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY  514 (524)
T ss_dssp             ------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred             ccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence                                                   11223445788999999999963  3899999999999999


Q ss_pred             CCC
Q psy17342        342 LNL  344 (401)
Q Consensus       342 ~~~  344 (401)
                      +..
T Consensus       515 l~~  517 (524)
T 2j04_B          515 LSL  517 (524)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            874

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.1e-36  Score=271.38  Aligned_cols=338  Identities=15%  Similarity=0.167  Sum_probs=223.7

Q ss_pred             chhh-hhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecC-CCCC
Q psy17342          2 DWAE-AGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWST-QHPE   79 (401)
Q Consensus         2 ~~~~-~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~   79 (401)
                      .|.. -+..+++|+.||.+++|+.............               ............|...|.+++|+| ++..
T Consensus        50 ~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  114 (408)
T 4a11_B           50 DIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK---------------AVCSIGRDHPDVHRYSVETVQWYPHDTGM  114 (408)
T ss_dssp             EECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC---------------EEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred             EEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc---------------ccccccccccccCCCcEEEEEEccCCCcE
Confidence            4555 6789999999999999998876633222100               000011111224778999999999 6778


Q ss_pred             eEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCC--ceEEEEecCCeEEEEECCCCCCCcee
Q psy17342         80 LLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNP--YLILGGTYSGQIVLWDTRVQKKTPVH  157 (401)
Q Consensus        80 l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~g~~dg~v~iw~~~~~~~~~~~  157 (401)
                      |++++          .|+.|++||+.+++...  .+.+...+.++.|+|.++  .++++|+.+|.|++||++++...   
T Consensus       115 l~s~~----------~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~---  179 (408)
T 4a11_B          115 FTSSS----------FDKTLKVWDTNTLQTAD--VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS---  179 (408)
T ss_dssp             EEEEE----------TTSEEEEEETTTTEEEE--EEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC---
T ss_pred             EEEEe----------CCCeEEEeeCCCCccce--eccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee---
Confidence            88888          79999999999766544  345678999999999653  38999999999999999887654   


Q ss_pred             eccccccCCCCcEEEEEEeecCCce-EEEEEeCCCcEEEeeccCCCCCcccccc--------ccccccCCccceEEEEec
Q psy17342        158 RTPLSVMAHTHPVFCMSVIGTQNAH-NLISISNDGRLCSWSLEMLSSPQETRDL--------QYNNKQTKNLAVLSLAFP  228 (401)
Q Consensus       158 ~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~  228 (401)
                         ..+..|...|.+++|  +|++. .+++++.||.|++||++...........        .......|...|.+++|+
T Consensus       180 ---~~~~~~~~~v~~~~~--~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  254 (408)
T 4a11_B          180 ---HILQGHRQEILAVSW--SPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT  254 (408)
T ss_dssp             ---EEECCCCSCEEEEEE--CSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred             ---eeecCCCCcEEEEEE--CCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence               234689999999999  88888 5889999999999999864422222110        000124588899999999


Q ss_pred             cCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCC--Ccee--eeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc
Q psy17342        229 QNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHE--GPVV--GLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP  304 (401)
Q Consensus       229 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~--~~v~--~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  304 (401)
                       +++++|++++.|+.|++||+.....  ...+..+.  ....  ...+....     ...+++++.|+.|++||+.++++
T Consensus       255 -~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~v~d~~~~~~  326 (408)
T 4a11_B          255 -SDGLHLLTVGTDNRMRLWNSSNGEN--TLVNYGKVCNNSKKGLKFTVSCGC-----SSEFVFVPYGSTIAVYTVYSGEQ  326 (408)
T ss_dssp             -TTSSEEEEEETTSCEEEEETTTCCB--CCCCCCCCCCCCSSCCCCEECCSS-----SSCEEEEEETTEEEEEETTTCCE
T ss_pred             -CCCCEEEEecCCCeEEEEECCCCcc--ceeccccccccccccceeEEecCC-----CceEEEEecCCEEEEEECcCCcc
Confidence             7999999999999999999985442  22222111  1111  11111111     45667777799999999999999


Q ss_pred             eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecC-CCcEEEEEecCCcEE
Q psy17342        305 VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTP-NGTQLCVGDEKGAIT  383 (401)
Q Consensus       305 ~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~  383 (401)
                      +..+.+|...|.+++|+|+++ +|++++.||.|++||+.+.+.+.....    ..  ....+.+ ....+.+.+.++.++
T Consensus       327 ~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~  399 (408)
T 4a11_B          327 ITMLKGHYKTVDCCVFQSNFQ-ELYSGSRDCNILAWVPSLYEPVPDDDE----TT--TKSQLNPAFEDAWSSSDEEGGTS  399 (408)
T ss_dssp             EEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEEECC----------------------------------------
T ss_pred             eeeeccCCCeEEEEEEcCCCC-EEEEECCCCeEEEEeCCCCCccCCCCc----eE--eccccccccceeecccCccCcee
Confidence            999999999999999999997 899999999999999998876554321    11  1123333 334456677889999


Q ss_pred             EEEecc
Q psy17342        384 MFDVGE  389 (401)
Q Consensus       384 iw~~~~  389 (401)
                      +|+...
T Consensus       400 ~W~~~~  405 (408)
T 4a11_B          400 AWSHPQ  405 (408)
T ss_dssp             ------
T ss_pred             ecCCcc
Confidence            998753

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2e-37  Score=280.19  Aligned_cols=279  Identities=11%  Similarity=0.087  Sum_probs=208.3

Q ss_pred             hhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecC-CCCCeEEEE
Q psy17342          6 AGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWST-QHPELLLAS   84 (401)
Q Consensus         6 ~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~   84 (401)
                      .+..||+|+.||.|+|||+........                          .....|.+.|++++|+| ++.+|++++
T Consensus       131 ~~~~lasGs~dg~i~lWd~~~~~~~~~--------------------------~~~~gH~~~V~~l~f~p~~~~~l~s~s  184 (435)
T 4e54_B          131 HPSTVAVGSKGGDIMLWNFGIKDKPTF--------------------------IKGIGAGGSITGLKFNPLNTNQFYASS  184 (435)
T ss_dssp             CTTCEEEEETTSCEEEECSSCCSCCEE--------------------------ECCCSSSCCCCEEEECSSCTTEEEEEC
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCceeE--------------------------EEccCCCCCEEEEEEeCCCCCEEEEEe
Confidence            356799999999999999875541100                          01125779999999998 577888888


Q ss_pred             eccCCCCCCCCCcEEEEEeCcCCCCCceEEEe--cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecccc
Q psy17342         85 YHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF--CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLS  162 (401)
Q Consensus        85 ~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~  162 (401)
                                .|++|++||++++.. ..+...  +...+.+++|+|++ .+|++|+.||.|++||++....       ..
T Consensus       185 ----------~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~~-------~~  245 (435)
T 4e54_B          185 ----------MEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKEL-------WN  245 (435)
T ss_dssp             ----------SSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCBC-------CC
T ss_pred             ----------CCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCccee-------EE
Confidence                      799999999985432 222222  23467899999977 7999999999999999975432       34


Q ss_pred             ccCCCCcEEEEEEeecCCce-EEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC
Q psy17342        163 VMAHTHPVFCMSVIGTQNAH-NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED  241 (401)
Q Consensus       163 ~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  241 (401)
                      +.+|...|.+++|  +|++. +|++++.|+.|++||++..........     ..+|...|++++|+ +++.+|++++.|
T Consensus       246 ~~~h~~~v~~v~~--~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~-----~~~h~~~v~~~~~s-pdg~~l~s~~~D  317 (435)
T 4e54_B          246 LRMHKKKVTHVAL--NPCCDWFLATASVDQTVKIWDLRQVRGKASFLY-----SLPHRHPVNAACFS-PDGARLLTTDQK  317 (435)
T ss_dssp             SBCCSSCEEEEEE--CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB-----CCBCSSCEEECCBC-TTSSEEEEEESS
T ss_pred             EecccceEEeeee--cCCCceEEEEecCcceeeEEecccccccceEEE-----eeeccccccceeEC-CCCCeeEEEcCC
Confidence            5789999999999  88775 688999999999999986433322222     23488899999999 899999999999


Q ss_pred             ceEEEEeCCCCCCCceeeecCCCC------ceeeeecCccCCCCCCCcEEEEEe------------CCCeEEEEEeeCCC
Q psy17342        242 GNVYSACRHGNKAGNVECYEGHEG------PVVGLSSHRAQGHIDFSHLYLTSS------------YDWSVKLWNIKENK  303 (401)
Q Consensus       242 ~~i~~~~~~~~~~~~~~~~~~~~~------~v~~i~~~~~~~~~~~~~~l~s~~------------~d~~i~iwd~~~~~  303 (401)
                      +.|++||+....  ....+..|..      .+....|+|.      +.++++++            .++.|++||..+++
T Consensus       318 ~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~  389 (435)
T 4e54_B          318 SEIRVYSASQWD--CPLGLIPHPHRHFQHLTPIKAAWHPR------YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK  389 (435)
T ss_dssp             SCEEEEESSSSS--SEEEECCCCCCCCSSSCCCBCEECSS------SSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC
T ss_pred             CEEEEEECCCCc--cceEEecccccccccceeEEEEEcCC------CCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc
Confidence            999999997543  3444444432      2334566776      45555553            34579999999999


Q ss_pred             ceEEEe-ecCCceEEE-EECCCCCcEEEEEecCCEEEEEeCCCCCC
Q psy17342        304 PVHSFN-EFRDYVMDV-QWSPINPALFATVEVAGRVDLWNLNLDTE  347 (401)
Q Consensus       304 ~~~~~~-~~~~~v~~v-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  347 (401)
                      .+..+. .|...|.++ +|+|+|. +|++|+ |+.|+|||+++++.
T Consensus       390 ~~~~l~~~~~~~v~s~~~fspdg~-~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          390 MMCQLYDPESSGISSLNEFNPMGD-TLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             EEEEECCSSCCCCCCEEEECTTSS-CEEEEC-SSEEEECCCC----
T ss_pred             EEEEEeCCCCCcEEEEEEECCCCC-EEEEEc-CCcEEEEECCcCee
Confidence            888865 577888887 6999997 778776 88999999988753

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=8.7e-37  Score=268.92  Aligned_cols=287  Identities=13%  Similarity=0.157  Sum_probs=216.6

Q ss_pred             chhhhhc-ccccccc---ccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCC-
Q psy17342          2 DWAEAGE-SQISGTL---HGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQ-   76 (401)
Q Consensus         2 ~~~~~~~-~~~~g~~---~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-   76 (401)
                      .|...+. .+++|+.   ||.+++|++......                     ..      ....|...|.+++|+|+ 
T Consensus        25 ~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~---------------------~~------~~~~~~~~v~~~~~~~~~   77 (357)
T 3i2n_A           25 KWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK---------------------LL------REIEKAKPIKCGTFGATS   77 (357)
T ss_dssp             EECTTSSEEEEEEC--CCCEEEEEEEECSSSEE---------------------EE------EEEEESSCEEEEECTTCC
T ss_pred             EEcCCCceEEEecCccCCCcEEEEEeCCCCccc---------------------ce------eeecccCcEEEEEEcCCC
Confidence            3555553 4567776   999999998754410                     00      01135688999999999 


Q ss_pred             --CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEE------eCCCCceEEEEecCCeEEEEEC
Q psy17342         77 --HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCF------AKFNPYLILGGTYSGQIVLWDT  148 (401)
Q Consensus        77 --~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~l~~g~~dg~v~iw~~  148 (401)
                        +..|++++          .|+.|++||+.+++........|...|.+++|      +|++ .+|++|+.||.|++||+
T Consensus        78 ~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~  146 (357)
T 3i2n_A           78 LQQRYLATGD----------FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDP  146 (357)
T ss_dssp             TTTCCEEEEE----------TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECT
T ss_pred             CCCceEEEec----------CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeC
Confidence              68999999          79999999999876333344467899999966      5655 68999999999999999


Q ss_pred             CCCCC-CceeeccccccCCCCcEEEEEEe--ecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEE
Q psy17342        149 RVQKK-TPVHRTPLSVMAHTHPVFCMSVI--GTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL  225 (401)
Q Consensus       149 ~~~~~-~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (401)
                      ..... ......  ....+...+.+++|.  .++++.++++++.||.|++||++....    ..     ...+...|.++
T Consensus       147 ~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~-----~~~~~~~v~~~  215 (357)
T 3i2n_A          147 RQKDDPVANMEP--VQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL----RW-----ETNIKNGVCSL  215 (357)
T ss_dssp             TSCSSCSEEECC--CTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE----EE-----EEECSSCEEEE
T ss_pred             CCCCCcceeccc--cCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce----ee-----ecCCCCceEEE
Confidence            88762 211110  011224489999841  178999999999999999999985321    11     12367789999


Q ss_pred             EeccC---CCCeEEEEcCCceEEEEeCCCCCCCceeee-----cCCCCceeeeecCccCCCCCCCc-EEEEEeCCCeEEE
Q psy17342        226 AFPQN---DVNNFVVGCEDGNVYSACRHGNKAGNVECY-----EGHEGPVVGLSSHRAQGHIDFSH-LYLTSSYDWSVKL  296 (401)
Q Consensus       226 ~~~~~---~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-----~~~~~~v~~i~~~~~~~~~~~~~-~l~s~~~d~~i~i  296 (401)
                      +|+ +   ++..+++++.||.|++||++...  ....+     .+|...|++++|+|+      +. +|++++.|+.|++
T Consensus       216 ~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~l~~~~~dg~i~i  286 (357)
T 3i2n_A          216 EFD-RKDISMNKLVATSLEGKFHVFDMRTQH--PTKGFASVSEKAHKSTVWQVRHLPQ------NRELFLTAGGAGGLHL  286 (357)
T ss_dssp             EES-CSSSSCCEEEEEESTTEEEEEEEEEEE--TTTEEEEEEEECCSSCEEEEEEETT------EEEEEEEEETTSEEEE
T ss_pred             EcC-CCCCCCCEEEEECCCCeEEEEeCcCCC--cccceeeeccCCCcCCEEEEEECCC------CCcEEEEEeCCCcEEE
Confidence            999 6   89999999999999999987543  23333     389999999999998      56 8999999999999


Q ss_pred             EEeeCC-------------------CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342        297 WNIKEN-------------------KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT  346 (401)
Q Consensus       297 wd~~~~-------------------~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~  346 (401)
                      ||++.+                   +++..+..|...|.+++|+|+++.++++++.|+.|++||+.+.+
T Consensus       287 wd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          287 WKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             eecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            999864                   35667888999999999999998544489999999999998754

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.1e-36  Score=287.80  Aligned_cols=303  Identities=12%  Similarity=0.115  Sum_probs=243.6

Q ss_pred             eeeeeeeccccccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCC----CCCceEEEecCCC-eeEEEE
Q psy17342         52 SFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK----KTTPEFEFFCQSP-VLSCCF  126 (401)
Q Consensus        52 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~----~~~~~~~~~~~~~-v~~~~~  126 (401)
                      ++.+.+......|.+.|.+++|+|++++|++++           ++.|++||+.++    +... ....|... |++++|
T Consensus         5 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------~~~v~v~~~~~~~~~~~~~~-~~~~h~~~~v~~~~~   72 (615)
T 1pgu_A            5 SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPC-----------GKSAFVRCLDDGDSKVPPVV-QFTGHGSSVVTTVKF   72 (615)
T ss_dssp             EEEEEECCCCCCCTTCCCCCEEETTTTEEEEEE-----------TTEEEEEECCSSCCSSCSEE-EECTTTTSCEEEEEE
T ss_pred             chhhccCCCCCCccCceeEEEECCCCCEEEEec-----------CCeEEEEECCCCCCccccce-EEecCCCceEEEEEE
Confidence            344444444456789999999999999999988           789999999976    4333 33457888 999999


Q ss_pred             eC--CCCceEEEEecCCeEEEEECCCCCCCc--eeeccccccCCCCcEEEEEEeecCCceEEEEEeCC----CcEEEeec
Q psy17342        127 AK--FNPYLILGGTYSGQIVLWDTRVQKKTP--VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND----GRLCSWSL  198 (401)
Q Consensus       127 ~~--~~~~~l~~g~~dg~v~iw~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~  198 (401)
                      +|  ++ .+|++|+.||.|++||+.++....  .......+..|..+|.+++|  +|++.+|++++.+    +.|.+||.
T Consensus        73 sp~~~~-~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~~~~~~~~v~~~d~  149 (615)
T 1pgu_A           73 SPIKGS-QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW--DFEGRRLCVVGEGRDNFGVFISWDS  149 (615)
T ss_dssp             CSSTTC-CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEE--CTTSSEEEEEECCSSCSEEEEETTT
T ss_pred             CcCCCC-CEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEE--eCCCCEEEEeccCCCCccEEEEEEC
Confidence            99  87 789999999999999997541000  00111234679999999999  9999999999988    78999984


Q ss_pred             cCCCCCccccccccccccCCccceEEEEeccCCCC-eEEEEcCCceEEEEeCCCCCCCceeeecCCCC---ceeeeecCc
Q psy17342        199 EMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVN-NFVVGCEDGNVYSACRHGNKAGNVECYEGHEG---PVVGLSSHR  274 (401)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~~  274 (401)
                      ..   .  ...     ..+|...|.+++|+ +++. .+++++.|+.|++||...  .+.+..+.+|..   .|.+++|+|
T Consensus       150 ~~---~--~~~-----~~~~~~~v~~~~~~-~~~~~~l~~~~~d~~v~vwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~  216 (615)
T 1pgu_A          150 GN---S--LGE-----VSGHSQRINACHLK-QSRPMRSMTVGDDGSVVFYQGPP--FKFSASDRTHHKQGSFVRDVEFSP  216 (615)
T ss_dssp             CC---E--EEE-----CCSCSSCEEEEEEC-SSSSCEEEEEETTTEEEEEETTT--BEEEEEECSSSCTTCCEEEEEECS
T ss_pred             CC---c--cee-----eecCCccEEEEEEC-CCCCcEEEEEeCCCcEEEEeCCC--cceeeeecccCCCCceEEEEEECC
Confidence            31   1  112     34588899999999 6665 899999999999999874  446778889999   999999999


Q ss_pred             cCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEE-e---ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcc
Q psy17342        275 AQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSF-N---EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA  350 (401)
Q Consensus       275 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~---~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  350 (401)
                      +.     +++|++++.|+.|++||+++++.+..+ .   .|...|.+++|+ ++. +|++++.|+.|++||+++++....
T Consensus       217 ~~-----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~  289 (615)
T 1pgu_A          217 DS-----GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKCVQK  289 (615)
T ss_dssp             TT-----CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred             CC-----CCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCcEEEE
Confidence            84     489999999999999999999999998 6   899999999999 886 899999999999999998765544


Q ss_pred             eEEe-ecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        351 TSAI-VEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       351 ~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      +... ......+.++.|+ ++.++++++.||.|++||+.++
T Consensus       290 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~  329 (615)
T 1pgu_A          290 WTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHD  329 (615)
T ss_dssp             EECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEE
T ss_pred             EcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCC
Confidence            4321 0113567888886 8999999999999999999875

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-36  Score=265.17  Aligned_cols=285  Identities=12%  Similarity=0.147  Sum_probs=233.0

Q ss_pred             CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCe
Q psy17342          1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL   80 (401)
Q Consensus         1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   80 (401)
                      |.|..-+.++++|+.||.+++||......+.                        .+    ..|...|.+++|+|++++|
T Consensus        38 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~------------------------~~----~~h~~~v~~~~~~~~~~~l   89 (369)
T 3zwl_B           38 VKYNKEGDLLFSCSKDSSASVWYSLNGERLG------------------------TL----DGHTGTIWSIDVDCFTKYC   89 (369)
T ss_dssp             EEECTTSCEEEEEESSSCEEEEETTTCCEEE------------------------EE----CCCSSCEEEEEECTTSSEE
T ss_pred             EEEcCCCCEEEEEeCCCEEEEEeCCCchhhh------------------------hh----hhcCCcEEEEEEcCCCCEE
Confidence            3466678899999999999999976554110                        00    1466889999999999999


Q ss_pred             EEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC-----CeEEEEECCCCCCCc
Q psy17342         81 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS-----GQIVLWDTRVQKKTP  155 (401)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d-----g~v~iw~~~~~~~~~  155 (401)
                      ++++          .|+.|++||+.+++....+  .+...+.+++|+|++ .++++++.+     |.|++||+.......
T Consensus        90 ~s~~----------~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~  156 (369)
T 3zwl_B           90 VTGS----------ADYSIKLWDVSNGQCVATW--KSPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATH  156 (369)
T ss_dssp             EEEE----------TTTEEEEEETTTCCEEEEE--ECSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred             EEEe----------CCCeEEEEECCCCcEEEEe--ecCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccce
Confidence            9999          7999999999987765544  478899999999977 678888888     999999998765422


Q ss_pred             eee-----ccccccCCCC--cEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEec
Q psy17342        156 VHR-----TPLSVMAHTH--PVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFP  228 (401)
Q Consensus       156 ~~~-----~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  228 (401)
                      ...     ....+..|..  .+.+++|  ++++..|++++.||.|++||++.....  ...     ...|...|.+++|+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~-----~~~~~~~v~~~~~~  227 (369)
T 3zwl_B          157 ELTKVSEEPIHKIITHEGLDAATVAGW--STKGKYIIAGHKDGKISKYDVSNNYEY--VDS-----IDLHEKSISDMQFS  227 (369)
T ss_dssp             CEEEECSSCSEEEECCTTCCCEEEEEE--CGGGCEEEEEETTSEEEEEETTTTTEE--EEE-----EECCSSCEEEEEEC
T ss_pred             eecccccceeeeccCCcCccceeEEEE--cCCCCEEEEEcCCCEEEEEECCCCcEe--EEE-----EecCCCceeEEEEC
Confidence            111     1112345555  9999999  899999999999999999999752222  222     23377899999999


Q ss_pred             cCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC--------------eE
Q psy17342        229 QNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW--------------SV  294 (401)
Q Consensus       229 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~--------------~i  294 (401)
                       +++.+|++++.|+.|++||++..  ..+..+. +...+.+++|+|+      +.++++++.++              .+
T Consensus       228 -~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~-~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~i  297 (369)
T 3zwl_B          228 -PDLTYFITSSRDTNSFLVDVSTL--QVLKKYE-TDCPLNTAVITPL------KEFIILGGGQEAKDVTTTSANEGKFEA  297 (369)
T ss_dssp             -TTSSEEEEEETTSEEEEEETTTC--CEEEEEE-CSSCEEEEEECSS------SSEEEEEECCC-------------CEE
T ss_pred             -CCCCEEEEecCCceEEEEECCCC--ceeeeec-CCCCceeEEecCC------CceEEEeecCCCceEEEEecCCCccee
Confidence             79999999999999999999844  3555665 7889999999999      78999999888              89


Q ss_pred             EEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342        295 KLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT  346 (401)
Q Consensus       295 ~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~  346 (401)
                      ++||+.+++++..+..|...|.+++|+|+++ +|++++.||.|++|+++.+.
T Consensus       298 ~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          298 RFYHKIFEEEIGRVQGHFGPLNTVAISPQGT-SYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEEECHHH
T ss_pred             EEEecCCCcchhheecccCcEEEEEECCCCC-EEEEEcCCCeEEEEECcccc
Confidence            9999999999999999999999999999997 89999999999999998654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.4e-36  Score=290.59  Aligned_cols=278  Identities=18%  Similarity=0.195  Sum_probs=216.7

Q ss_pred             hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH   86 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   86 (401)
                      .+.++||+.||.|++|++.........                   ...    ....|...|.+++|+|++++|++++  
T Consensus       395 ~~~l~s~s~D~~i~~W~~~~~~~~~~~-------------------~~~----~~~~h~~~v~~v~~s~~g~~l~sgs--  449 (694)
T 3dm0_A          395 ADIIVSASRDKSIILWKLTKDDKAYGV-------------------AQR----RLTGHSHFVEDVVLSSDGQFALSGS--  449 (694)
T ss_dssp             CSEEEEEETTSEEEEEECCCSTTCSCE-------------------EEE----EEECCSSCEEEEEECTTSSEEEEEE--
T ss_pred             CCEEEEEeCCCcEEEEEccCCCccccc-------------------ccc----eecCCCCcEEEEEECCCCCEEEEEe--
Confidence            357999999999999998654411000                   001    1125778999999999999999999  


Q ss_pred             cCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCC
Q psy17342         87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH  166 (401)
Q Consensus        87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  166 (401)
                              .|+.|+|||+.++.....+ ..|...|.+++|+|++ .+|++|+.|++|++||.........   .....+|
T Consensus       450 --------~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~---~~~~~~h  516 (694)
T 3dm0_A          450 --------WDGELRLWDLAAGVSTRRF-VGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTI---SEGGEGH  516 (694)
T ss_dssp             --------TTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEE---CSSTTSC
T ss_pred             --------CCCcEEEEECCCCcceeEE-eCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceee---ccCCCCC
Confidence                    7999999999977655433 4578999999999977 7899999999999999865432111   1123579


Q ss_pred             CCcEEEEEEeecCCc--eEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceE
Q psy17342        167 THPVFCMSVIGTQNA--HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNV  244 (401)
Q Consensus       167 ~~~v~~~~~~~~~~~--~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  244 (401)
                      ...|.+++|  +|++  ..+++++.|++|++||++...   ....     +.+|...|++++|+ +++++|++|+.|+.|
T Consensus       517 ~~~v~~~~~--~~~~~~~~l~s~s~d~~v~vwd~~~~~---~~~~-----~~~h~~~v~~v~~s-pdg~~l~sg~~Dg~i  585 (694)
T 3dm0_A          517 RDWVSCVRF--SPNTLQPTIVSASWDKTVKVWNLSNCK---LRST-----LAGHTGYVSTVAVS-PDGSLCASGGKDGVV  585 (694)
T ss_dssp             SSCEEEEEE--CSCSSSCEEEEEETTSCEEEEETTTCC---EEEE-----ECCCSSCEEEEEEC-TTSSEEEEEETTSBC
T ss_pred             CCcEEEEEE--eCCCCcceEEEEeCCCeEEEEECCCCc---EEEE-----EcCCCCCEEEEEEe-CCCCEEEEEeCCCeE
Confidence            999999999  6665  689999999999999997521   1112     34588999999999 899999999999999


Q ss_pred             EEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC------------
Q psy17342        245 YSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR------------  312 (401)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------  312 (401)
                      ++||+...  +.+..+. +...|.+++|+|+      +.++++++ ++.|++||+++++.+..+..+.            
T Consensus       586 ~iwd~~~~--~~~~~~~-~~~~v~~~~~sp~------~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  655 (694)
T 3dm0_A          586 LLWDLAEG--KKLYSLE-ANSVIHALCFSPN------RYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGP  655 (694)
T ss_dssp             EEEETTTT--EEEECCB-CSSCEEEEEECSS------SSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-----------
T ss_pred             EEEECCCC--ceEEEec-CCCcEEEEEEcCC------CcEEEEEc-CCCEEEEECCCCCChhhhcccccccccccccccc
Confidence            99999744  3455555 4568999999998      56666665 7779999999988777665321            


Q ss_pred             -------CceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        313 -------DYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       313 -------~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                             ..+++++|+|+++ +|++|+.||.|++||+..
T Consensus       656 ~~~~~~~~~~~~l~~spdg~-~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          656 AATKRKVIYCTSLNWSADGS-TLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             -----CCCCEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred             ccCCceeEEeeeEEEcCCCC-EEEEEcCCCeEEEEeccC
Confidence                   1378999999997 899999999999999863

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.5e-36  Score=271.91  Aligned_cols=299  Identities=13%  Similarity=0.151  Sum_probs=229.6

Q ss_pred             eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCC---CceEEEecCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342         68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKT---TPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIV  144 (401)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~  144 (401)
                      ...++++|+...+++.+         +.+|.|+||++.....   .......|.+.|++++|+|++..+|++|+.||.|+
T Consensus        37 ~~~~~~~~~~~~~~~~~---------~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~  107 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEA---------SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVM  107 (402)
T ss_dssp             SCSEEECSSEEEEEBCC---------SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEE
T ss_pred             CCcEEECCCeEEEEEEE---------cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEE
Confidence            44578888876555433         2799999999965321   11122357899999999994448999999999999


Q ss_pred             EEECCCCCCCcee-eccccccCCCCcEEEEEEeecCCc-eEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        145 LWDTRVQKKTPVH-RTPLSVMAHTHPVFCMSVIGTQNA-HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       145 iw~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      +||+.++...... .....+.+|...|.+++|  +|++ .+|++++.||.|++||++...   ....+.   ...|...|
T Consensus       108 vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~p~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~---~~~~~~~v  179 (402)
T 2aq5_A          108 VWEIPDGGLVLPLREPVITLEGHTKRVGIVAW--HPTAQNVLLSAGCDNVILVWDVGTGA---AVLTLG---PDVHPDTI  179 (402)
T ss_dssp             EEECCTTCCSSCBCSCSEEEECCSSCEEEEEE--CSSBTTEEEEEETTSCEEEEETTTTE---EEEEEC---TTTCCSCE
T ss_pred             EEEccCCCCccccCCceEEecCCCCeEEEEEE--CcCCCCEEEEEcCCCEEEEEECCCCC---ccEEEe---cCCCCCce
Confidence            9999887432111 111345789999999999  8898 699999999999999998522   222220   03478899


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeee-cCCCCc-eeeeecCccCCCCCCCcEEEEE---eCCCeEEEE
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY-EGHEGP-VVGLSSHRAQGHIDFSHLYLTS---SYDWSVKLW  297 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~~~-v~~i~~~~~~~~~~~~~~l~s~---~~d~~i~iw  297 (401)
                      .+++|+ +++.+|++++.|+.|++||++..  ..+..+ .+|.+. +.++.|+|+      +.+|++|   +.|+.|++|
T Consensus       180 ~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~g~~~~~d~~i~iw  250 (402)
T 2aq5_A          180 YSVDWS-RDGALICTSCRDKRVRVIEPRKG--TVVAEKDRPHEGTRPVHAVFVSE------GKILTTGFSRMSERQVALW  250 (402)
T ss_dssp             EEEEEC-TTSSCEEEEETTSEEEEEETTTT--EEEEEEECSSCSSSCCEEEECST------TEEEEEEECTTCCEEEEEE
T ss_pred             EEEEEC-CCCCEEEEEecCCcEEEEeCCCC--ceeeeeccCCCCCcceEEEEcCC------CcEEEEeccCCCCceEEEE
Confidence            999999 79999999999999999999843  356666 678776 899999998      7899998   689999999


Q ss_pred             EeeCCCc-eEEEe-ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC-CcceEEeecCCCCeEEEEecCCCcEEE
Q psy17342        298 NIKENKP-VHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE-VPATSAIVEGAPALSRVTWTPNGTQLC  374 (401)
Q Consensus       298 d~~~~~~-~~~~~-~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~  374 (401)
                      |+++++. +.... .|...+.+++|+|+++.++++++.|+.|++||+.+++. +..+.. ..+...|.+++|+|++.+++
T Consensus       251 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~-~~~~~~v~~~~~sp~~~~~~  329 (402)
T 2aq5_A          251 DTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM-FSSKESQRGMGYMPKRGLEV  329 (402)
T ss_dssp             ETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE-ECCSSCCSEEEECCGGGSCG
T ss_pred             cCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc-cccCCcccceEEecccccce
Confidence            9988664 44443 46778999999999985556677899999999998774 333332 33668899999999999887


Q ss_pred             EEecCCcEEEEEeccCcccee
Q psy17342        375 VGDEKGAITMFDVGEVGIACL  395 (401)
Q Consensus       375 ~~~~dg~v~iw~~~~~~~~~l  395 (401)
                      +  .++.+++|++.++..+.+
T Consensus       330 s--~~~~~~~~~l~~~~~~~i  348 (402)
T 2aq5_A          330 N--KCEIARFYKLHERKCEPI  348 (402)
T ss_dssp             G--GTEEEEEEEEETTEEEEE
T ss_pred             e--cceeEEEEEcCCCcEEEE
Confidence            5  566899999998765544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=7.3e-37  Score=272.16  Aligned_cols=278  Identities=12%  Similarity=0.129  Sum_probs=211.7

Q ss_pred             chhhhh-ccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecC-CCCC
Q psy17342          2 DWAEAG-ESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWST-QHPE   79 (401)
Q Consensus         2 ~~~~~~-~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~   79 (401)
                      .|...+ ..+++|+.||.+++||.........+                          ....|...|.+++|+| +++.
T Consensus        80 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------------------------~~~~h~~~v~~~~~~~~~~~~  133 (383)
T 3ei3_B           80 EWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI--------------------------QGMGPGDAITGMKFNQFNTNQ  133 (383)
T ss_dssp             EECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE--------------------------CCCSTTCBEEEEEEETTEEEE
T ss_pred             EECCCCCCEEEEEcCCCeEEEEeCCCcccceee--------------------------ecCCcCCceeEEEeCCCCCCE
Confidence            355555 78999999999999998755411000                          0124678999999999 6788


Q ss_pred             eEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe--cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCcee
Q psy17342         80 LLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF--CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVH  157 (401)
Q Consensus        80 l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~  157 (401)
                      |++++          .|+.|++||+.+ .....+...  +...|.+++|+|++ .+|++|+.|+.|++||++. +..   
T Consensus       134 l~s~~----------~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~-~~~---  197 (383)
T 3ei3_B          134 LFVSS----------IRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLDG-HEI---  197 (383)
T ss_dssp             EEEEE----------TTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETTS-CEE---
T ss_pred             EEEEe----------CCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECCC-CEE---
Confidence            99888          799999999984 333333222  24779999999977 7899999999999999943 221   


Q ss_pred             eccccccCCCCcEEEEEEeecCCce-EEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccC-CCCeE
Q psy17342        158 RTPLSVMAHTHPVFCMSVIGTQNAH-NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQN-DVNNF  235 (401)
Q Consensus       158 ~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l  235 (401)
                         ..+..|...|.+++|  +|++. +|++++.|+.|++||++...........     .+|...|.+++|+ + ++.+|
T Consensus       198 ---~~~~~h~~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~~~s-~~~~~~l  266 (383)
T 3ei3_B          198 ---FKEKLHKAKVTHAEF--NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE-----MPHEKPVNAAYFN-PTDSTKL  266 (383)
T ss_dssp             ---EEEECSSSCEEEEEE--CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE-----EECSSCEEEEEEC-TTTSCEE
T ss_pred             ---EEeccCCCcEEEEEE--CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE-----ecCCCceEEEEEc-CCCCCEE
Confidence               235689999999999  88988 9999999999999999863322222221     2378899999999 6 99999


Q ss_pred             EEEcCCceEEEEeCCCCCCCceeeecCC-------CCcee----------eeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        236 VVGCEDGNVYSACRHGNKAGNVECYEGH-------EGPVV----------GLSSHRAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       236 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~-------~~~v~----------~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      ++++.|+.|++||++...  ....+.+|       ...+.          .++++|+      +.+  +++.|+.|++||
T Consensus       267 ~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~d------g~~--s~s~d~~i~iwd  336 (383)
T 3ei3_B          267 LTTDQRNEIRVYSSYDWS--KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPD------DQL--LLNDKRTIDIYD  336 (383)
T ss_dssp             EEEESSSEEEEEETTBTT--SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCC------TTT--CTTCCCCEEEEE
T ss_pred             EEEcCCCcEEEEECCCCc--cccccccccccccccccceEEeccCCCCceEEEecCC------ccc--ccCCCCeEEEEe
Confidence            999999999999998543  33344433       33333          3445554      333  667899999999


Q ss_pred             eeCCCceEEEee--cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        299 IKENKPVHSFNE--FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       299 ~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      +.+++++..+..  |...+..++|+|+++ +|++++ |+.|++||+++
T Consensus       337 ~~~~~~~~~l~~~~~~~~~~~~~~s~~g~-~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          337 ANSGGLVHQLRDPNAAGIISLNKFSPTGD-VLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TTTCCEEEEECBTTBCSCCCEEEECTTSS-EEEEEE-TTEEEEEECC-
T ss_pred             cCCCceeeeecCCCCCceEEEEEEecCcc-EEEEec-CCcEEEEecCC
Confidence            999999999987  467788889999997 788886 99999999874

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.1e-36  Score=269.15  Aligned_cols=290  Identities=10%  Similarity=0.131  Sum_probs=222.9

Q ss_pred             hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCC----CCCeEE
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQ----HPELLL   82 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~   82 (401)
                      ...+++++.++.+++|+......+.                     ....+..  ..|...|.+++|+|+    +++|++
T Consensus        34 ~~~~~~~~~~~~v~vw~~~~~~~~~---------------------~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~l~~   90 (366)
T 3k26_A           34 DPLVFATVGSNRVTLYECHSQGEIR---------------------LLQSYVD--ADADENFYTCAWTYDSNTSHPLLAV   90 (366)
T ss_dssp             SCEEEEEEETTEEEEEEECGGGCEE---------------------EEEEEEC--SCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred             CceEEEECCCCEEEEEEcCCCcEEE---------------------eeeeccc--cCCCCcEEEEEeccCCCCCCCEEEE
Confidence            3447777778899999987554211                     1111111  136688999999999    567998


Q ss_pred             EEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecccc
Q psy17342         83 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLS  162 (401)
Q Consensus        83 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~  162 (401)
                      ++          .|+.|++||+.+++....+ ..|...|.+++|+|++..+|++|+.||.|++||+++++......   .
T Consensus        91 ~~----------~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~  156 (366)
T 3k26_A           91 AG----------SRGIIRIINPITMQCIKHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG---G  156 (366)
T ss_dssp             EE----------TTCEEEEECTTTCCEEEEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEEC---S
T ss_pred             ec----------CCCEEEEEEchhceEeeee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEec---c
Confidence            88          7999999999977655443 34789999999999444899999999999999998876432211   1


Q ss_pred             ccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccc---------------------ccccccCCccc
Q psy17342        163 VMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDL---------------------QYNNKQTKNLA  221 (401)
Q Consensus       163 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~---------------------~~~~~~~~~~~  221 (401)
                      +..|...|.+++|  +|++.+|++++.||.|++||++..... ..+..                     .......|...
T Consensus       157 ~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (366)
T 3k26_A          157 VEGHRDEVLSADY--DLLGEKIMSCGMDHSLKLWRINSKRMM-NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY  233 (366)
T ss_dssp             TTSCSSCEEEEEE--CTTSSEEEEEETTSCEEEEESCSHHHH-HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred             cccccCceeEEEE--CCCCCEEEEecCCCCEEEEECCCCccc-cccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence            2579999999999  899999999999999999999752211 00000                     00012237889


Q ss_pred             eEEEEeccCCCCeEEEEcCCceEEEEeCCCCCC------------CceeeecCCCCceeeeecCccCCCCCCCcEEEEEe
Q psy17342        222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKA------------GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS  289 (401)
Q Consensus       222 v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~------------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~  289 (401)
                      |.+++|+   ++++++++.|+.|++||+.....            ..+..+.+|...|.+++|+|+..    +.+|++++
T Consensus       234 v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~----~~~l~~~~  306 (366)
T 3k26_A          234 VDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFW----QKMLALGN  306 (366)
T ss_dssp             CCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTT----SSEEEEEC
T ss_pred             EEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCC----CcEEEEEe
Confidence            9999998   56999999999999999875432            23667788999999999999721    48999999


Q ss_pred             CCCeEEEEEeeCCCceE----EEeec--CCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        290 YDWSVKLWNIKENKPVH----SFNEF--RDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       290 ~d~~i~iwd~~~~~~~~----~~~~~--~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      .||.|++||+.++++..    .+..|  ...|.+++|+|+++ +|++++.||.|++||+.+
T Consensus       307 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          307 QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS-ILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             TTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred             cCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC-eEEEEeCCCEEEEEEecC
Confidence            99999999999876543    67777  78999999999997 899999999999999863

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=5.2e-36  Score=271.97  Aligned_cols=282  Identities=15%  Similarity=0.273  Sum_probs=230.7

Q ss_pred             ccccce-EEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC
Q psy17342         63 SKNRNV-TYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG  141 (401)
Q Consensus        63 ~~~~~v-~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg  141 (401)
                      .|.+.| .++  ++++++|++++          .||.|++||+.+++....+ ..|...|.+++|++   .++++|+.||
T Consensus       116 ~h~~~v~~~~--~~~g~~l~sg~----------~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~---~~l~s~~~dg  179 (445)
T 2ovr_B          116 GHDDHVITCL--QFCGNRIVSGS----------DDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRD---NIIISGSTDR  179 (445)
T ss_dssp             CSTTSCEEEE--EEETTEEEEEE----------TTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEET---TEEEEEETTS
T ss_pred             ccCCCcEEEE--EEcCCEEEEEE----------CCCcEEEEECCCCcEEEEE-cCCCCCEEEEEecC---CEEEEEeCCC
Confidence            355654 554  45688999999          7999999999987655433 35789999999973   5899999999


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccc
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA  221 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  221 (401)
                      .|++||+.+++..      ..+.+|...|.++.|    ++..+++++.||.|++||++...   ....     ..+|...
T Consensus       180 ~i~vwd~~~~~~~------~~~~~h~~~v~~~~~----~~~~l~s~s~dg~i~~wd~~~~~---~~~~-----~~~~~~~  241 (445)
T 2ovr_B          180 TLKVWNAETGECI------HTLYGHTSTVRCMHL----HEKRVVSGSRDATLRVWDIETGQ---CLHV-----LMGHVAA  241 (445)
T ss_dssp             CEEEEETTTTEEE------EEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEESSSCC---EEEE-----EECCSSC
T ss_pred             eEEEEECCcCcEE------EEECCCCCcEEEEEe----cCCEEEEEeCCCEEEEEECCCCc---EEEE-----EcCCccc
Confidence            9999999887643      235689999999998    35679999999999999997522   1112     2347889


Q ss_pred             eEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342        222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE  301 (401)
Q Consensus       222 v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  301 (401)
                      |.++++   ++..+++|+.|+.|++||.+.  ...+..+.+|...|.++.+.        +.++++++.|+.|++||+++
T Consensus       242 v~~~~~---~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~--------~~~l~~~~~d~~i~i~d~~~  308 (445)
T 2ovr_B          242 VRCVQY---DGRRVVSGAYDFMVKVWDPET--ETCLHTLQGHTNRVYSLQFD--------GIHVVSGSLDTSIRVWDVET  308 (445)
T ss_dssp             EEEEEE---CSSCEEEEETTSCEEEEEGGG--TEEEEEECCCSSCEEEEEEC--------SSEEEEEETTSCEEEEETTT
T ss_pred             EEEEEE---CCCEEEEEcCCCEEEEEECCC--CcEeEEecCCCCceEEEEEC--------CCEEEEEeCCCeEEEEECCC
Confidence            999998   478999999999999999874  44678888999999999993        68999999999999999999


Q ss_pred             CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCc
Q psy17342        302 NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGA  381 (401)
Q Consensus       302 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  381 (401)
                      ++++..+..|...+.++.++  +. ++++++.||.|++||+++++....+.....|...|++++|+  +++|++|+.||.
T Consensus       309 ~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~  383 (445)
T 2ovr_B          309 GNCIHTLTGHQSLTSGMELK--DN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGT  383 (445)
T ss_dssp             CCEEEEECCCCSCEEEEEEE--TT-EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSE
T ss_pred             CCEEEEEcCCcccEEEEEEe--CC-EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCe
Confidence            99999999999999998885  33 78999999999999999877655543323367889999995  689999999999


Q ss_pred             EEEEEeccCccceeeee
Q psy17342        382 ITMFDVGEVGIACLKFI  398 (401)
Q Consensus       382 v~iw~~~~~~~~~l~~~  398 (401)
                      |++||+.+++  .++.+
T Consensus       384 v~iwd~~~~~--~~~~~  398 (445)
T 2ovr_B          384 VKLWDLKTGE--FIRNL  398 (445)
T ss_dssp             EEEEETTTCC--EEEEE
T ss_pred             EEEEECCCCc--eeeee
Confidence            9999999884  44443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.2e-36  Score=269.52  Aligned_cols=278  Identities=16%  Similarity=0.180  Sum_probs=218.5

Q ss_pred             hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH   86 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   86 (401)
                      +..+++++.||.+++|+.......                        ..+   ...|...|.+++|+|++++|++++  
T Consensus       103 ~~~l~~~~~d~~v~lw~~~~~~~~------------------------~~~---~~~~~~~v~~v~~s~~~~~l~~~~--  153 (401)
T 4aez_A          103 NLNVVAVALERNVYVWNADSGSVS------------------------ALA---ETDESTYVASVKWSHDGSFLSVGL--  153 (401)
T ss_dssp             TTSEEEEEETTEEEEEETTTCCEE------------------------EEE---ECCTTCCEEEEEECTTSSEEEEEE--
T ss_pred             CCCEEEEECCCeEEEeeCCCCcEe------------------------Eee---ecCCCCCEEEEEECCCCCEEEEEC--
Confidence            356899999999999998665511                        000   012568899999999999999999  


Q ss_pred             cCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCC
Q psy17342         87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH  166 (401)
Q Consensus        87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  166 (401)
                              .||.|++||+.+++....+ ..|...|.+++|++   .++++|+.||.|++||++......     ..+..|
T Consensus       154 --------~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~  216 (401)
T 4aez_A          154 --------GNGLVDIYDVESQTKLRTM-AGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQI-----GTLQGH  216 (401)
T ss_dssp             --------TTSCEEEEETTTCCEEEEE-CCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEE-----EEEECC
T ss_pred             --------CCCeEEEEECcCCeEEEEe-cCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCccee-----eEEcCC
Confidence                    7999999999977655443 35789999999953   689999999999999998544221     234689


Q ss_pred             CCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc--CCceE
Q psy17342        167 THPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC--EDGNV  244 (401)
Q Consensus       167 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i  244 (401)
                      .+.|.+++|  ++++.+|++++.|+.|++||++..   .....     ...|...|.+++|+|....++++++  .|+.|
T Consensus       217 ~~~v~~~~~--~~~~~~l~s~~~d~~v~iwd~~~~---~~~~~-----~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i  286 (401)
T 4aez_A          217 SSEVCGLAW--RSDGLQLASGGNDNVVQIWDARSS---IPKFT-----KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQI  286 (401)
T ss_dssp             SSCEEEEEE--CTTSSEEEEEETTSCEEEEETTCS---SEEEE-----ECCCSSCCCEEEECTTSTTEEEEECCTTTCEE
T ss_pred             CCCeeEEEE--cCCCCEEEEEeCCCeEEEccCCCC---CccEE-----ecCCcceEEEEEECCCCCCEEEEecCCCCCEE
Confidence            999999999  899999999999999999999852   12222     2347889999999954556666655  79999


Q ss_pred             EEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe--CCCeEEEEEeeCCCceE--EEeecCCceEEEEE
Q psy17342        245 YSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS--YDWSVKLWNIKENKPVH--SFNEFRDYVMDVQW  320 (401)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~--~~~~~~~~v~~v~~  320 (401)
                      ++||+...  ..+..+. +...|.+++|+|+      +.++++++  .|+.|++||+.+++...  .+.+|...|.+++|
T Consensus       287 ~i~d~~~~--~~~~~~~-~~~~v~~~~~s~~------~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~  357 (401)
T 4aez_A          287 HFWNAATG--ARVNTVD-AGSQVTSLIWSPH------SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSAL  357 (401)
T ss_dssp             EEEETTTC--CEEEEEE-CSSCEEEEEECSS------SSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEE
T ss_pred             EEEECCCC--CEEEEEe-CCCcEEEEEECCC------CCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEE
Confidence            99999843  4566665 6788999999998      68888844  89999999999865544  46689999999999


Q ss_pred             CCCCCcEEEEEecCCEEEEEeCCCCCCCcc
Q psy17342        321 SPINPALFATVEVAGRVDLWNLNLDTEVPA  350 (401)
Q Consensus       321 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  350 (401)
                      +|+++ +|++++.||.|++||+.+++.+..
T Consensus       358 s~dg~-~l~s~~~dg~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          358 SPDGR-ILSTAASDENLKFWRVYDGDHVKR  386 (401)
T ss_dssp             CTTSS-EEEEECTTSEEEEEECCC------
T ss_pred             CCCCC-EEEEEeCCCcEEEEECCCCccccc
Confidence            99997 899999999999999998876544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-35  Score=267.33  Aligned_cols=291  Identities=10%  Similarity=0.070  Sum_probs=222.9

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCC---CCceEEE---------------------------
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK---TTPEFEF---------------------------  115 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~---~~~~~~~---------------------------  115 (401)
                      .++.+++|+|+|++|+++.           ++.|++||+.+++   .+..+..                           
T Consensus         5 ~p~~~v~~s~dg~~l~~~~-----------~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAII-----------KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENEN   73 (450)
T ss_dssp             CCCCEEEECSSSSEEEEEE-----------TTEEEEEEEETTTEEEEEEEEECCC-------------------------
T ss_pred             ccEEEEEecCCCCEEEEEe-----------CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccc
Confidence            5799999999999666665           8899999998876   3322221                           


Q ss_pred             --------------------------ecCCCeeEEEEeCCCCceEEEEecCCeEEEEECC--CCCCCceeeccccccCCC
Q psy17342        116 --------------------------FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTR--VQKKTPVHRTPLSVMAHT  167 (401)
Q Consensus       116 --------------------------~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~--~~~~~~~~~~~~~~~~~~  167 (401)
                                                .|...|.+++|+|++..++++|+.||.|++||+.  ++......    ....|.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~~~  149 (450)
T 2vdu_B           74 KKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR----KRFCFS  149 (450)
T ss_dssp             --------------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE----EEEECS
T ss_pred             cccccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee----ecccCC
Confidence                                      1223699999999885556899999999999998  55543221    113677


Q ss_pred             CcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCc-cccccccccccCCccceEEEEeccCC---CCeEEEEcCCce
Q psy17342        168 HPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQ-ETRDLQYNNKQTKNLAVLSLAFPQND---VNNFVVGCEDGN  243 (401)
Q Consensus       168 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~  243 (401)
                      ..|.+++|  +|++.+|++++.+|.+.+|++....... ....     ..+|...|.+++|+ ++   +.+|++|+.|+.
T Consensus       150 ~~v~~~~~--sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~-----~~~h~~~v~~~~~s-p~~~~~~~l~s~~~d~~  221 (450)
T 2vdu_B          150 KRPNAISI--AEDDTTVIIADKFGDVYSIDINSIPEEKFTQEP-----ILGHVSMLTDVHLI-KDSDGHQFIITSDRDEH  221 (450)
T ss_dssp             SCEEEEEE--CTTSSEEEEEETTSEEEEEETTSCCCSSCCCCC-----SEECSSCEEEEEEE-ECTTSCEEEEEEETTSC
T ss_pred             CCceEEEE--cCCCCEEEEEeCCCcEEEEecCCccccccccee-----eecccCceEEEEEc-CCCCCCcEEEEEcCCCc
Confidence            89999999  9999999999999999999997633222 1112     34488899999999 67   889999999999


Q ss_pred             EEEEeCCCCCCCceee-ecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeec-----------
Q psy17342        244 VYSACRHGNKAGNVEC-YEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEF-----------  311 (401)
Q Consensus       244 i~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----------  311 (401)
                      |++||+...  ..+.. +.+|...|.+++|+ +      +.+|++++.|+.|++||+++++++..+..+           
T Consensus       222 i~vwd~~~~--~~~~~~~~~h~~~v~~~~~s-d------~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  292 (450)
T 2vdu_B          222 IKISHYPQC--FIVDKWLFGHKHFVSSICCG-K------DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQH  292 (450)
T ss_dssp             EEEEEESCT--TCEEEECCCCSSCEEEEEEC-S------TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTS
T ss_pred             EEEEECCCC--ceeeeeecCCCCceEEEEEC-C------CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcc
Confidence            999999744  34555 56899999999999 6      799999999999999999999988888632           


Q ss_pred             --------------CCceEEEEECCCCCcEEEEEe-cCCEEEEEeC--CCCCCCcceEEeecCCCCeEEEEecCCCcEEE
Q psy17342        312 --------------RDYVMDVQWSPINPALFATVE-VAGRVDLWNL--NLDTEVPATSAIVEGAPALSRVTWTPNGTQLC  374 (401)
Q Consensus       312 --------------~~~v~~v~~~~~~~~~l~~~~-~d~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  374 (401)
                                    ...|.+++|+|+++ ++++++ .|+.|++|++  ..+..+........ ...|.+++|+|++.+++
T Consensus       293 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~-~~~v~~~~~~~~~~~v~  370 (450)
T 2vdu_B          293 LAPPRFQNENNDIIEFAVSKIIKSKNLP-FVAFFVEATKCIIILEMSEKQKGDLALKQIITF-PYNVISLSAHNDEFQVT  370 (450)
T ss_dssp             BC----------CBCCCEEEEEECSSSS-EEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC-SSCEEEEEEETTEEEEE
T ss_pred             cccccccccccccceEEEEEEEEeCCCC-EEEEEECCCCeEEEEEeccCCCCceeeccEecc-CCceEEEEecCCcEEEE
Confidence                          35689999999998 566666 8999999999  44432222222223 37899999999654444


Q ss_pred             EEec------CCcEEEEEeccC
Q psy17342        375 VGDE------KGAITMFDVGEV  390 (401)
Q Consensus       375 ~~~~------dg~v~iw~~~~~  390 (401)
                      +++.      +..|.+|.+...
T Consensus       371 ~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          371 LDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             ECCTTCCSSCCCSEEEEEEETT
T ss_pred             EecccCCCCCCcceEEEEEEcC
Confidence            4443      556899988654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.3e-37  Score=272.49  Aligned_cols=250  Identities=13%  Similarity=0.129  Sum_probs=197.9

Q ss_pred             cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEe
Q psy17342        117 CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSW  196 (401)
Q Consensus       117 ~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~w  196 (401)
                      +.++|++++|+|++ .+|++|+.|+.|++||+.++....    ...+.+|...|.+++|  +|++.+|++++.|+.|++|
T Consensus        10 ~~~~v~~~~~s~~g-~~l~~~~~d~~i~iw~~~~~~~~~----~~~~~~h~~~v~~~~~--s~~~~~l~s~s~d~~v~vw   82 (377)
T 3dwl_C           10 LPKPSYEHAFNSQR-TEFVTTTATNQVELYEQDGNGWKH----ARTFSDHDKIVTCVDW--APKSNRIVTCSQDRNAYVY   82 (377)
T ss_dssp             CSSCCSCCEECSSS-SEEECCCSSSCBCEEEEETTEEEE----CCCBCCCSSCEEEEEE--CTTTCCEEEEETTSSEEEC
T ss_pred             CCCcEEEEEECCCC-CEEEEecCCCEEEEEEccCCceEE----EEEEecCCceEEEEEE--eCCCCEEEEEeCCCeEEEE
Confidence            46799999999977 799999999999999998762111    1345789999999999  8999999999999999999


Q ss_pred             eccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCC-CCceeeecC-CCCceeeeecCc
Q psy17342        197 SLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK-AGNVECYEG-HEGPVVGLSSHR  274 (401)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-~~~~~~~~~-~~~~v~~i~~~~  274 (401)
                      |+...........     ...|...|.+++|+ +++++|++++.|+.|++||++... ......+.+ |...|.+++|+|
T Consensus        83 d~~~~~~~~~~~~-----~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~  156 (377)
T 3dwl_C           83 EKRPDGTWKQTLV-----LLRLNRAATFVRWS-PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP  156 (377)
T ss_dssp             ------CCCCEEE-----CCCCSSCEEEEECC-TTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred             EcCCCCceeeeeE-----ecccCCceEEEEEC-CCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence            9986431222222     34488899999999 799999999999999999998543 123566777 999999999999


Q ss_pred             cCCCCCCCcEEEEEeCCCeEEEEEeeC------------------CCceEEEeecCCceEEEEECCCCCcEEEEEecCCE
Q psy17342        275 AQGHIDFSHLYLTSSYDWSVKLWNIKE------------------NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGR  336 (401)
Q Consensus       275 ~~~~~~~~~~l~s~~~d~~i~iwd~~~------------------~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~  336 (401)
                      +      +++|++++.|+.|++||++.                  ++++..+ .|...|.+++|+|+++ +|++++.|+.
T Consensus       157 ~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~-~l~~~~~d~~  228 (377)
T 3dwl_C          157 N------NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN-ALAYAGHDSS  228 (377)
T ss_dssp             T------SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS-CEEEEETTTE
T ss_pred             C------CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC-EEEEEeCCCc
Confidence            8      79999999999999999952                  4455556 8899999999999997 7999999999


Q ss_pred             EEEEeCCCCCC----CcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        337 VDLWNLNLDTE----VPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       337 i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      |++||+.+++.    +..+   ..|...|.+++|+|+|++|++++.++. .+|+...++
T Consensus       229 i~iwd~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~~~~-~~~~~~~~~  283 (377)
T 3dwl_C          229 VTIAYPSAPEQPPRALITV---KLSQLPLRSLLWANESAIVAAGYNYSP-ILLQGNESG  283 (377)
T ss_dssp             EC-CEECSTTSCEEECCCE---ECSSSCEEEEEEEETTEEEEEESSSSE-EEECCCC--
T ss_pred             EEEEECCCCCCcceeeEee---cCCCCceEEEEEcCCCCEEEEEcCCcE-EEEEeCCCc
Confidence            99999998876    3333   367788999999999999999987664 477776544

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4e-35  Score=254.09  Aligned_cols=282  Identities=15%  Similarity=0.181  Sum_probs=218.6

Q ss_pred             CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCe
Q psy17342          1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL   80 (401)
Q Consensus         1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   80 (401)
                      |+|.. .+.||+| .|++|+|||...++.+.                        .+.  ...|...|.+++|+|++++|
T Consensus        31 l~WS~-~~~lAvg-~D~tV~iWd~~tg~~~~------------------------~~~--~~~~~~~V~~v~~~~~~~~l   82 (318)
T 4ggc_A           31 VDWSS-GNVLAVA-LDNSVYLWSASSGDILQ------------------------LLQ--MEQPGEYISSVAWIKEGNYL   82 (318)
T ss_dssp             EEECT-TSEEEEE-ETTEEEEEETTTCCEEE------------------------EEE--CCSTTCCEEEEEECTTSSEE
T ss_pred             EEECC-CCEEEEE-eCCEEEEEECCCCCEEE------------------------EEE--ecCCCCeEEEEEECCCCCEE
Confidence            46764 3455554 69999999987665111                        010  11466789999999999999


Q ss_pred             EEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecc
Q psy17342         81 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP  160 (401)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~  160 (401)
                      ++|+          .|++|++||+++++.+..+ ..|...+.++.+.  + .++++|+.++.+++|+........     
T Consensus        83 ~sgs----------~Dg~v~iw~~~~~~~~~~~-~~h~~~~~~~~~~--~-~~l~s~~~~~~~~~~~~~~~~~~~-----  143 (318)
T 4ggc_A           83 AVGT----------SSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWN--S-YILSSGSRSGHIHHHDVRVAEHHV-----  143 (318)
T ss_dssp             EEEE----------TTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTSSSCEE-----
T ss_pred             EEEE----------CCCcEEEeecCCceeEEEe-cCccceEEEeecC--C-CEEEEEecCCceEeeecCCCceeE-----
Confidence            9999          7999999999987766544 3467777776664  3 689999999999999988765421     


Q ss_pred             ccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeE--EEE
Q psy17342        161 LSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNF--VVG  238 (401)
Q Consensus       161 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l--~~~  238 (401)
                      ..+.+|...+..+.+  .+++.++++++.|+.|++||++...........    ...+...|.+++++|.+...+  +++
T Consensus       144 ~~~~~~~~~~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~  217 (318)
T 4ggc_A          144 ATLSGHSQEVCGLRW--APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT----FTQHQGAVKAVAWCPWQSNVLATGGG  217 (318)
T ss_dssp             EEEECCSSCEEEEEE--CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE----ECCCCSCEEEEEECTTSTTEEEEEEC
T ss_pred             EEEcCccCceEEEEE--cCCCCEEEEEecCcceeEEECCCCcccccceee----ecccCCceEEEEecCCCCcEEEEEec
Confidence            234689999999999  899999999999999999999864322221111    234677899999995555544  456


Q ss_pred             cCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe--CCCeEEEEEeeCCCceEEEeecCCceE
Q psy17342        239 CEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS--YDWSVKLWNIKENKPVHSFNEFRDYVM  316 (401)
Q Consensus       239 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~  316 (401)
                      +.++.|++|+.....   ......+...+..+.++|.      +..+++++  .|+.|++||+++++++.++.+|.+.|+
T Consensus       218 ~~~~~i~lwd~~~~~---~~~~~~~~~~v~~~~~~~~------~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~  288 (318)
T 4ggc_A          218 TSDRHIRIWNVCSGA---CLSAVDAHSQVCSILWSPH------YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL  288 (318)
T ss_dssp             TTTCEEEEEETTTCC---EEEEEECSSCEEEEEEETT------TTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             CCCCEEEEEeccccc---ccccccceeeeeeeeeccc------ccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence            788999999987543   3334457788999999998      46655544  799999999999999999999999999


Q ss_pred             EEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342        317 DVQWSPINPALFATVEVAGRVDLWNLNLD  345 (401)
Q Consensus       317 ~v~~~~~~~~~l~~~~~d~~i~iwd~~~~  345 (401)
                      +++|+|+++ +|++++.||+|+|||+...
T Consensus       289 ~l~~spdg~-~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          289 SLTMSPDGA-TVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEEECTTSS-CEEEEETTTEEEEECCSCC
T ss_pred             EEEEcCCCC-EEEEEecCCeEEEEECCCC
Confidence            999999997 7999999999999999764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-35  Score=262.50  Aligned_cols=256  Identities=16%  Similarity=0.190  Sum_probs=204.7

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-EecCCCeeEEEEeCCC-CceEEEEecC
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-FFCQSPVLSCCFAKFN-PYLILGGTYS  140 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~l~~g~~d  140 (401)
                      .|.+.|.+++|+|++++|++++          .|+.|+|||+.......... ..|...|++++|+|+. ..+|++|+.|
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d   78 (379)
T 3jrp_A            9 AHNELIHDAVLDYYGKRLATCS----------SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   78 (379)
T ss_dssp             ECCCCEEEEEECSSSSEEEEEE----------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             CCcccEEEEEEcCCCCEEEEEE----------CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence            5779999999999999999999          79999999998433222222 3478999999998761 4799999999


Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC--ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN--AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      |.|++||+.+++....    ..+..|...|.+++|  +|+  +.+|++++.|+.|++||++.... .....     ...|
T Consensus        79 g~v~iwd~~~~~~~~~----~~~~~~~~~v~~~~~--~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~-----~~~~  146 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQI----AVHAVHSASVNSVQW--APHEYGPLLLVASSDGKVSVVEFKENGT-TSPII-----IDAH  146 (379)
T ss_dssp             SCEEEEEEETTEEEEE----EEECCCSSCEEEEEE--CCGGGCSEEEEEETTSEEEEEECCTTSC-CCEEE-----EECC
T ss_pred             CEEEEEEcCCCceeEe----eeecCCCcceEEEEe--CCCCCCCEEEEecCCCcEEEEecCCCCc-eeeEE-----ecCC
Confidence            9999999988752222    234679999999999  777  89999999999999999986322 12222     2347


Q ss_pred             ccceEEEEeccC------------CCCeEEEEcCCceEEEEeCCCCCC--CceeeecCCCCceeeeecCccCCCCCCCcE
Q psy17342        219 NLAVLSLAFPQN------------DVNNFVVGCEDGNVYSACRHGNKA--GNVECYEGHEGPVVGLSSHRAQGHIDFSHL  284 (401)
Q Consensus       219 ~~~v~~~~~~~~------------~~~~l~~~~~d~~i~~~~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~  284 (401)
                      ...|.+++|+|.            ++..+++++.|+.|++||++....  .....+.+|...|.+++|+|+...   +.+
T Consensus       147 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~---~~~  223 (379)
T 3jrp_A          147 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL---RSY  223 (379)
T ss_dssp             TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS---SEE
T ss_pred             CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCC---CCe
Confidence            889999999943            689999999999999999975432  244677889999999999997200   279


Q ss_pred             EEEEeCCCeEEEEEeeCCCce---EEE--eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        285 YLTSSYDWSVKLWNIKENKPV---HSF--NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       285 l~s~~~d~~i~iwd~~~~~~~---~~~--~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      |++++.|+.|++||++++...   ..+  ..|...|.+++|+|+++ +|++++.||.|++|++..
T Consensus       224 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          224 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             EEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-CEEEEESSSSEEEEEEEE
T ss_pred             EEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCC-EEEEecCCCcEEEEeCCC
Confidence            999999999999999886422   122  23788999999999998 788899999999999874

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-37  Score=280.61  Aligned_cols=293  Identities=14%  Similarity=0.155  Sum_probs=218.4

Q ss_pred             EecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeC-CCCceEEEEecCCeEEEEECCC
Q psy17342         72 DWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAK-FNPYLILGGTYSGQIVLWDTRV  150 (401)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~g~~dg~v~iw~~~~  150 (401)
                      .|+|+++.++++.                .|+.. ++.+..+..+|.+.|++++|+| ++ .+|++|+.||.|++||+.+
T Consensus        34 ~f~~~~~~~~~~~----------------~w~~~-g~~~~~~~~~h~~~V~~~~~s~~~~-~~l~s~s~dg~v~vwd~~~   95 (437)
T 3gre_A           34 EFGPIQEIVRSPN----------------MGNLR-GKLIATLMENEPNSITSSAVSPGET-PYLITGSDQGVIKIWNLKE   95 (437)
T ss_dssp             GGCCCCCCCCCCC----------------GGGCC-CCEEEEECTTTTSCEEEEEEECSSS-CEEEEEETTSEEEEEEHHH
T ss_pred             hcCCccccccccc----------------ccccc-ceEEeeeccCCCCceEEEEECCCCC-CEEEEecCCceEEEeECcc
Confidence            3788887766544                27644 4444444345789999999999 76 7999999999999999976


Q ss_pred             CCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCC--CCCccccccc---cccccC--CccceE
Q psy17342        151 QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEML--SSPQETRDLQ---YNNKQT--KNLAVL  223 (401)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~--~~~~~~~~~~---~~~~~~--~~~~v~  223 (401)
                      ........... ...|...|.+++|  ++++.+|++++.||.|++||++..  +.........   ......  +...+.
T Consensus        96 ~~~~~~~~~~~-~~~h~~~v~~~~~--~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  172 (437)
T 3gre_A           96 IIVGEVYSSSL-TYDCSSTVTQITM--IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV  172 (437)
T ss_dssp             HHTTCCCSCSE-EEECSSCEEEEEE--CTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE
T ss_pred             cccCcccceee-eccCCCCEEEEEE--eCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce
Confidence            21111111111 1259999999999  899999999999999999999521  1111111000   000011  344555


Q ss_pred             EEE--eccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC--CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        224 SLA--FPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG--HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       224 ~~~--~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      ++.  ++ +++.++++|+.|+.|++||++.  .+.+..+.+  |...|++++|+|+      +.+|++|+.|+.|++||+
T Consensus       173 ~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~h~~~v~~~~~s~~------~~~l~s~~~dg~i~iwd~  243 (437)
T 3gre_A          173 RMRAFVN-EEKSLLVALTNLSRVIIFDIRT--LERLQIIENSPRHGAVSSICIDEE------CCVLILGTTRGIIDIWDI  243 (437)
T ss_dssp             EEEEEEC-SSCEEEEEEETTSEEEEEETTT--CCEEEEEECCGGGCCEEEEEECTT------SCEEEEEETTSCEEEEET
T ss_pred             EEEEEEc-CCCCEEEEEeCCCeEEEEeCCC--CeeeEEEccCCCCCceEEEEECCC------CCEEEEEcCCCeEEEEEc
Confidence            555  44 6789999999999999999984  446777877  8999999999998      799999999999999999


Q ss_pred             eCCCceEEEe-ecCCceEEEEECC----CCCcEEEEEecCCEEEEEeCCCCCCCcceEEe--------------------
Q psy17342        300 KENKPVHSFN-EFRDYVMDVQWSP----INPALFATVEVAGRVDLWNLNLDTEVPATSAI--------------------  354 (401)
Q Consensus       300 ~~~~~~~~~~-~~~~~v~~v~~~~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------------------  354 (401)
                      ++++++..+. .|...|.+++|+|    ++. +|++++.||.|++||+++++....+...                    
T Consensus       244 ~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  322 (437)
T 3gre_A          244 RFNVLIRSWSFGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELN  322 (437)
T ss_dssp             TTTEEEEEEBCTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCC
T ss_pred             CCccEEEEEecCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccce
Confidence            9999998886 6788999996665    564 8999999999999999987654433311                    


Q ss_pred             -e--cCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeee
Q psy17342        355 -V--EGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFI  398 (401)
Q Consensus       355 -~--~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~  398 (401)
                       .  .|...|++++|+ ++++|++|+.||.|++||+.+++  +++.+
T Consensus       323 ~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~--~~~~~  366 (437)
T 3gre_A          323 FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS--SSKAV  366 (437)
T ss_dssp             CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG--GCEEE
T ss_pred             ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc--cceEE
Confidence             0  145668999999 88999999999999999999874  44443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.3e-35  Score=262.95  Aligned_cols=249  Identities=15%  Similarity=0.141  Sum_probs=208.4

Q ss_pred             ecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEE
Q psy17342        116 FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCS  195 (401)
Q Consensus       116 ~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~  195 (401)
                      .|..+|++++|+|++ ++|++|+.|+.|++||+.+.+....    ..+.+|...|.+++|  ++++.+|++++.||.|++
T Consensus         6 ~~~~~i~~~~~s~~~-~~l~~~~~d~~v~i~~~~~~~~~~~----~~~~~h~~~v~~~~~--~~~~~~l~~~~~dg~i~v   78 (372)
T 1k8k_C            6 FLVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQV----HELKEHNGQVTGVDW--APDSNRIVTCGTDRNAYV   78 (372)
T ss_dssp             SCSSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTEEEEE----EEEECCSSCEEEEEE--ETTTTEEEEEETTSCEEE
T ss_pred             ccCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCCCcEEee----eeecCCCCcccEEEE--eCCCCEEEEEcCCCeEEE
Confidence            368899999999977 7899999999999999987642111    234689999999999  889999999999999999


Q ss_pred             eeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCC--ceeeecCCCCceeeeecC
Q psy17342        196 WSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAG--NVECYEGHEGPVVGLSSH  273 (401)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~--~~~~~~~~~~~v~~i~~~  273 (401)
                      ||++... ......     ...|...|.+++|+ +++++|++++.|+.|++|+++.....  ......+|...|.+++|+
T Consensus        79 wd~~~~~-~~~~~~-----~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~  151 (372)
T 1k8k_C           79 WTLKGRT-WKPTLV-----ILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH  151 (372)
T ss_dssp             EEEETTE-EEEEEE-----CCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred             EECCCCe-eeeeEE-----eecCCCceeEEEEC-CCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEc
Confidence            9997521 111222     23477899999999 78999999999999999999854421  123336789999999999


Q ss_pred             ccCCCCCCCcEEEEEeCCCeEEEEEee------------------CCCceEEEeecCCceEEEEECCCCCcEEEEEecCC
Q psy17342        274 RAQGHIDFSHLYLTSSYDWSVKLWNIK------------------ENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAG  335 (401)
Q Consensus       274 ~~~~~~~~~~~l~s~~~d~~i~iwd~~------------------~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~  335 (401)
                      |+      +++|++++.|+.|++||++                  .++++..+..|...|.+++|+|++. +|++++.|+
T Consensus       152 ~~------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~  224 (372)
T 1k8k_C          152 PN------SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDS  224 (372)
T ss_dssp             TT------SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEETTT
T ss_pred             CC------CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC-EEEEEeCCC
Confidence            98      7899999999999999953                  5778888889999999999999997 899999999


Q ss_pred             EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        336 RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       336 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      .|++||+++++.+..+   ..+...|.+++|+|++++|++| .|+.|++|++.+
T Consensus       225 ~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          225 TVCLADADKKMAVATL---ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEEEEGGGTTEEEEE---ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EEEEEECCCCceeEEE---ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            9999999988755444   3567789999999999988888 899999999998

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=5.3e-35  Score=256.85  Aligned_cols=283  Identities=13%  Similarity=0.138  Sum_probs=211.6

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      .|...|.+++|+|+|++|++++           +..++||++++.+...  ... ...+..+++.+.+..++++|+.|+.
T Consensus        17 ~h~~~V~~v~fs~dg~~la~g~-----------~~~~~iw~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~d~~   82 (355)
T 3vu4_A           17 HVSNPVTDYEFNQDQSCLILST-----------LKSFEIYNVHPVAHIM--SQE-MRHLSKVRMLHRTNYVAFVTGVKEV   82 (355)
T ss_dssp             --CCCCCEEEECTTSSEEEEEC-----------SSEEEEEEETTEEEEE--EEE-CSCCCEEEECTTSSEEEEECSSTTE
T ss_pred             cCCCceEEEEECCCCCEEEEEc-----------CCEEEEEecCCcceee--eee-cCCeEEEEEcCCCCEEEEEECCccE
Confidence            4678999999999999888777           4457899988654332  222 3358888999877555577888899


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      |++||..+++....       ..|..+|.++++  +++.  ++++ .|+.|++||+.........+.        .  ..
T Consensus        83 v~iWd~~~~~~~~~-------~~~~~~v~~v~~--~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~--------~--~~  140 (355)
T 3vu4_A           83 VHIWDDVKKQDVSR-------IKVDAPVKDLFL--SREF--IVVS-YGDVISVFKFGNPWKRITDDI--------R--FG  140 (355)
T ss_dssp             EEEEETTTTEEEEE-------EECSSCEEEEEE--CSSE--EEEE-ETTEEEEEESSTTCCBSSCCE--------E--EE
T ss_pred             EEEEECCCCcEEEE-------EECCCceEEEEE--cCCE--EEEE-EcCEEEEEECCCCceeeEEec--------c--CC
Confidence            99999988764321       236679999999  5553  4443 478999999986312222111        1  34


Q ss_pred             EEEEeccCCCCeEEE--EcCCceEEEEeCCCCCC-------------Cc-eeeecCCCCceeeeecCccCCCCCCCcEEE
Q psy17342        223 LSLAFPQNDVNNFVV--GCEDGNVYSACRHGNKA-------------GN-VECYEGHEGPVVGLSSHRAQGHIDFSHLYL  286 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~--~~~d~~i~~~~~~~~~~-------------~~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~  286 (401)
                      ..++++ +  ..+++  |+.+|.|++||+.....             .+ +..+.+|.++|++++|+|+      +.+|+
T Consensus       141 ~~~~~s-~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~------g~~l~  211 (355)
T 3vu4_A          141 GVCEFS-N--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK------SDMVA  211 (355)
T ss_dssp             EEEEEE-T--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT------SSEEE
T ss_pred             ceEEEE-c--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC------CCEEE
Confidence            455666 3  56665  68999999999975320             11 6778999999999999998      79999


Q ss_pred             EEeCCCe-EEEEEeeCCCceEEEe-e-cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceE-----------
Q psy17342        287 TSSYDWS-VKLWNIKENKPVHSFN-E-FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATS-----------  352 (401)
Q Consensus       287 s~~~d~~-i~iwd~~~~~~~~~~~-~-~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----------  352 (401)
                      +|+.|++ |++||+++++++.++. + |...|.+++|+|+++ +|++++.|+.|++||++.........           
T Consensus       212 s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~  290 (355)
T 3vu4_A          212 TCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQ  290 (355)
T ss_dssp             EEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCC
T ss_pred             EEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCCCCcccccccceeeccccc
Confidence            9999998 9999999999999998 5 999999999999997 89999999999999998654322111           


Q ss_pred             ---------EeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        353 ---------AIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       353 ---------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                               ...........++|+++|++|++++.||.+++|++..++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          291 SEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             CSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             cccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence                     001112234679999999999999999999999998753

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-35  Score=254.73  Aligned_cols=274  Identities=15%  Similarity=0.151  Sum_probs=219.2

Q ss_pred             hhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEE
Q psy17342          5 EAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLAS   84 (401)
Q Consensus         5 ~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   84 (401)
                      .-+..+++|+.||.+++||......                        ...+    ..|...|.+++|+|+++.|++++
T Consensus        27 ~~~~~l~s~~~dg~v~vw~~~~~~~------------------------~~~~----~~~~~~v~~~~~~~~~~~l~~~~   78 (313)
T 3odt_A           27 VDDSKVASVSRDGTVRLWSKDDQWL------------------------GTVV----YTGQGFLNSVCYDSEKELLLFGG   78 (313)
T ss_dssp             EETTEEEEEETTSEEEEEEESSSEE------------------------EEEE----EECSSCEEEEEEETTTTEEEEEE
T ss_pred             cCCCEEEEEEcCCcEEEEECCCCEE------------------------EEEe----ecCCccEEEEEECCCCCEEEEec
Confidence            3467899999999999999854330                        0011    13558899999999999999999


Q ss_pred             eccCCCCCCCCCcEEEEEeCcCCCC--CceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecccc
Q psy17342         85 YHRNKEAPNEPDGVCLIWNTKFKKT--TPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLS  162 (401)
Q Consensus        85 ~~~~~~~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~  162 (401)
                                .|+.|++|++.....  .......|...|.+++|.  + .++++++.||.|++||.  ....      ..
T Consensus        79 ----------~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d~--~~~~------~~  137 (313)
T 3odt_A           79 ----------KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWKE--GSLV------YN  137 (313)
T ss_dssp             ----------TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEET--TEEE------EE
T ss_pred             ----------CCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEcC--CcEE------Ee
Confidence                      799999999876431  122234578899999994  3 68999999999999992  2211      23


Q ss_pred             ccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC
Q psy17342        163 VMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED  241 (401)
Q Consensus       163 ~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  241 (401)
                      +..|..++.+++|  .+ ++..+++++.||.|++||...   .....      ...+...+.+++|+ +++. +++++.|
T Consensus       138 ~~~~~~~v~~~~~--~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~------~~~~~~~i~~~~~~-~~~~-~~~~~~d  204 (313)
T 3odt_A          138 LQAHNASVWDAKV--VSFSENKFLTASADKTIKLWQNDK---VIKTF------SGIHNDVVRHLAVV-DDGH-FISCSND  204 (313)
T ss_dssp             EECCSSCEEEEEE--EETTTTEEEEEETTSCEEEEETTE---EEEEE------CSSCSSCEEEEEEE-ETTE-EEEEETT
T ss_pred             cccCCCceeEEEE--ccCCCCEEEEEECCCCEEEEecCc---eEEEE------eccCcccEEEEEEc-CCCe-EEEccCC
Confidence            4689999999999  45 888999999999999999432   22111      12267789999999 6666 9999999


Q ss_pred             ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEEC
Q psy17342        242 GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWS  321 (401)
Q Consensus       242 ~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  321 (401)
                      +.|++||++.  .+.+..+.+|..+|++++|+|+      + .|++++.|+.|++||+++++++..+..|...|.+++|+
T Consensus       205 g~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~------~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~  275 (313)
T 3odt_A          205 GLIKLVDMHT--GDVLRTYEGHESFVYCIKLLPN------G-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCM  275 (313)
T ss_dssp             SEEEEEETTT--CCEEEEEECCSSCEEEEEECTT------S-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEEC
T ss_pred             CeEEEEECCc--hhhhhhhhcCCceEEEEEEecC------C-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEc
Confidence            9999999984  4467888999999999999998      5 68999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEecCCEEEEEeCCCCCCCcce
Q psy17342        322 PINPALFATVEVAGRVDLWNLNLDTEVPAT  351 (401)
Q Consensus       322 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  351 (401)
                      |+++  +++++.||.|++||+++++.....
T Consensus       276 ~~~~--~~~~~~dg~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          276 SNGD--IIVGSSDNLVRIFSQEKSRWASED  303 (313)
T ss_dssp             TTSC--EEEEETTSCEEEEESCGGGCCC--
T ss_pred             cCCC--EEEEeCCCcEEEEeCCCCceeehh
Confidence            9996  456889999999999987665443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3e-36  Score=265.57  Aligned_cols=299  Identities=11%  Similarity=0.053  Sum_probs=210.9

Q ss_pred             hhhhhcccccccccc-------ccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecC
Q psy17342          3 WAEAGESQISGTLHG-------LQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWST   75 (401)
Q Consensus         3 ~~~~~~~~~~g~~~g-------~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   75 (401)
                      |..-+..+++|+.+.       .|++|++.........                .+.....  .....|.+.|.+++++ 
T Consensus        22 fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~----------------~~~~~~~--~~l~~~~~~v~s~~~~-   82 (365)
T 4h5i_A           22 FLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE----------------QFHILSE--FALEDNDDSPTAIDAS-   82 (365)
T ss_dssp             EEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH----------------HEEEEEE--EECCTTSCCCCEEEEE-
T ss_pred             EeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee----------------eeeeeeE--EEccCCCCceEEEEeC-
Confidence            445577888886533       5899998665521000                0000000  0111355778888765 


Q ss_pred             CCCCeEEEEecc-CCCCCCCCCcEEEEEeCcCCCCCceEEEe--------cCCCeeEEEEeCCCCce-EEEEecCCeEEE
Q psy17342         76 QHPELLLASYHR-NKEAPNEPDGVCLIWNTKFKKTTPEFEFF--------CQSPVLSCCFAKFNPYL-ILGGTYSGQIVL  145 (401)
Q Consensus        76 ~~~~l~~~~~~~-~~~~~~~~d~~v~iwd~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~-l~~g~~dg~v~i  145 (401)
                       +..++++.... .....++.|+.+++|++.+..........        +...+.+++|+|++..+ +++++.|++|+|
T Consensus        83 -~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~i  161 (365)
T 4h5i_A           83 -KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRI  161 (365)
T ss_dssp             -TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEE
T ss_pred             -CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEE
Confidence             44566654211 12233446889999998764433222211        23458899999998443 245567899999


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEE
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL  225 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (401)
                      ||+.+.+....       ..|...|.+++|  +|++.++++++.+ .+.+|+..... ......     ...|...|.++
T Consensus       162 wd~~~~~~~~~-------~~~~~~V~~v~f--spdg~~l~s~s~~-~~~~~~~~~~~-~~~~~~-----~~~~~~~v~~v  225 (365)
T 4h5i_A          162 IDPSDLTEKFE-------IETRGEVKDLHF--STDGKVVAYITGS-SLEVISTVTGS-CIARKT-----DFDKNWSLSKI  225 (365)
T ss_dssp             EETTTTEEEEE-------EECSSCCCEEEE--CTTSSEEEEECSS-CEEEEETTTCC-EEEEEC-----CCCTTEEEEEE
T ss_pred             eECCCCcEEEE-------eCCCCceEEEEE--ccCCceEEeccce-eEEEEEeccCc-ceeeee-----cCCCCCCEEEE
Confidence            99988764321       247788999999  9999999999865 45566554322 111111     23478889999


Q ss_pred             EeccCCCCeEEEEcCCc----eEEEEeCCCCCCC--ceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        226 AFPQNDVNNFVVGCEDG----NVYSACRHGNKAG--NVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       226 ~~~~~~~~~l~~~~~d~----~i~~~~~~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      +|+ |++..+++++.++    .++.|+.......  ....+.+|..+|++++|+|+      +++||+|+.|++|+|||+
T Consensus       226 ~fs-pdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spd------g~~lasgs~D~~V~iwd~  298 (365)
T 4h5i_A          226 NFI-ADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMK------GELAVLASNDNSIALVKL  298 (365)
T ss_dssp             EEE-ETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTT------SCEEEEEETTSCEEEEET
T ss_pred             EEc-CCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCC------CCceEEEcCCCEEEEEEC
Confidence            999 7999999998877    5788887643322  23456789999999999999      899999999999999999


Q ss_pred             eCCCceEEE-eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342        300 KENKPVHSF-NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD  345 (401)
Q Consensus       300 ~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~  345 (401)
                      ++++++.++ .+|...|++++|+|+++ +|++++.|++|+|||+...
T Consensus       299 ~~~~~~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          299 KDLSMSKIFKQAHSFAITEVTISPDST-YVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             TTTEEEEEETTSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCTT
T ss_pred             CCCcEEEEecCcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCCC
Confidence            999999886 68999999999999997 8999999999999999643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.1e-35  Score=263.30  Aligned_cols=281  Identities=10%  Similarity=0.069  Sum_probs=215.4

Q ss_pred             ccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecC-CCCCeEEEEec
Q psy17342          8 ESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWST-QHPELLLASYH   86 (401)
Q Consensus         8 ~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~   86 (401)
                      ..+++|+.+|.++||++.....+.....                        ....|...|.+++|+| +++.|++++  
T Consensus        48 ~~~~~~~~~g~i~v~~~~~~~~~~~~~~------------------------~~~~h~~~V~~~~~~p~~~~~l~s~s--  101 (402)
T 2aq5_A           48 ALICEASGGGAFLVLPLGKTGRVDKNVP------------------------LVCGHTAPVLDIAWCPHNDNVIASGS--  101 (402)
T ss_dssp             EEEBCCSSSCCEEEEETTCCEECCTTCC------------------------CBCCCSSCEEEEEECTTCTTEEEEEE--
T ss_pred             EEEEEEcCCCEEEEEECccCCCCCCCCc------------------------eEecCCCCEEEEEeCCCCCCEEEEEe--
Confidence            3456788999999999855432111100                        0114778999999999 888999998  


Q ss_pred             cCCCCCCCCCcEEEEEeCcCCCC------CceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecc
Q psy17342         87 RNKEAPNEPDGVCLIWNTKFKKT------TPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP  160 (401)
Q Consensus        87 ~~~~~~~~~d~~v~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~  160 (401)
                              .|+.|+|||+.++..      .......|...|.+++|+|++.++|++|+.||.|++||+.+++..      
T Consensus       102 --------~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~------  167 (402)
T 2aq5_A          102 --------EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV------  167 (402)
T ss_dssp             --------TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE------
T ss_pred             --------CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc------
Confidence                    799999999987632      222334578999999999988779999999999999999987643      


Q ss_pred             ccc--cCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccc-eEEEEeccCCCCeEEE
Q psy17342        161 LSV--MAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA-VLSLAFPQNDVNNFVV  237 (401)
Q Consensus       161 ~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~  237 (401)
                      ..+  ..|...|.+++|  ++++.+|++++.||.|++||++...   ....+    ...|... +.++.|+ +++.++++
T Consensus       168 ~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~----~~~~~~~~~~~~~~~-~~~~~l~~  237 (402)
T 2aq5_A          168 LTLGPDVHPDTIYSVDW--SRDGALICTSCRDKRVRVIEPRKGT---VVAEK----DRPHEGTRPVHAVFV-SEGKILTT  237 (402)
T ss_dssp             EEECTTTCCSCEEEEEE--CTTSSCEEEEETTSEEEEEETTTTE---EEEEE----ECSSCSSSCCEEEEC-STTEEEEE
T ss_pred             EEEecCCCCCceEEEEE--CCCCCEEEEEecCCcEEEEeCCCCc---eeeee----ccCCCCCcceEEEEc-CCCcEEEE
Confidence            223  579999999999  8999999999999999999998622   11111    0224444 8899999 78999999


Q ss_pred             E---cCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEE-EEeCCCeEEEEEeeCCCc-eEEEeec-
Q psy17342        238 G---CEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL-TSSYDWSVKLWNIKENKP-VHSFNEF-  311 (401)
Q Consensus       238 ~---~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~-~~~~~~~-  311 (401)
                      |   +.|+.|++||++............|...+.+++|+|+      +++++ +++.|+.|++||+.++++ +..+..| 
T Consensus       238 g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~  311 (402)
T 2aq5_A          238 GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPD------TNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS  311 (402)
T ss_dssp             EECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETT------TTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC
T ss_pred             eccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCC------CCEEEEEEcCCCeEEEEEecCCCcceEeecccc
Confidence            9   8999999999986443222222357788999999998      56775 555799999999998875 5566554 


Q ss_pred             -CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC
Q psy17342        312 -RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE  347 (401)
Q Consensus       312 -~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  347 (401)
                       ...|.+++|+|++. ++++  .++.+++|++.++..
T Consensus       312 ~~~~v~~~~~sp~~~-~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          312 SKESQRGMGYMPKRG-LEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             CSSCCSEEEECCGGG-SCGG--GTEEEEEEEEETTEE
T ss_pred             cCCcccceEEecccc-ccee--cceeEEEEEcCCCcE
Confidence             58999999999996 5543  577999999987543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.2e-34  Score=261.42  Aligned_cols=260  Identities=15%  Similarity=0.218  Sum_probs=208.2

Q ss_pred             cccccceEEEEecCC-CCCeEEEEeccCCCCCCCCCcEEEEEeCcCC--------CCCce-EEEecCCCeeEEEEeCCCC
Q psy17342         62 WSKNRNVTYMDWSTQ-HPELLLASYHRNKEAPNEPDGVCLIWNTKFK--------KTTPE-FEFFCQSPVLSCCFAKFNP  131 (401)
Q Consensus        62 ~~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~--------~~~~~-~~~~~~~~v~~~~~~~~~~  131 (401)
                      ..|.+.|++++|+|+ +..|++++          .+|.|++|++.+.        ...+. ....|...|++++|+|++.
T Consensus       125 ~~h~~~v~~l~~~p~~~~~lat~~----------~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  194 (430)
T 2xyi_A          125 INHEGEVNRARYMPQNACVIATKT----------PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN  194 (430)
T ss_dssp             EEESSCCSEEEEETTEEEEEEEEC----------SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST
T ss_pred             EcCCCcEEEEEECCCCCcEEEEEC----------CCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC
Confidence            457799999999998 55666666          7999999999861        12222 2335788999999999886


Q ss_pred             ceEEEEecCCeEEEEECCCCCCC-ceeeccccccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCCccccc
Q psy17342        132 YLILGGTYSGQIVLWDTRVQKKT-PVHRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRD  209 (401)
Q Consensus       132 ~~l~~g~~dg~v~iw~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~  209 (401)
                      .+|++|+.||.|++|++...... ........+..|...|.+++|  +| ++..|++++.||.|++||++..........
T Consensus       195 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~  272 (430)
T 2xyi_A          195 GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW--HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT  272 (430)
T ss_dssp             TEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEE--CSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred             CeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEE--eCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE
Confidence            69999999999999999874321 111112345689999999999  77 678999999999999999986432222222


Q ss_pred             cccccccCCccceEEEEeccCCCC-eEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEE
Q psy17342        210 LQYNNKQTKNLAVLSLAFPQNDVN-NFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS  288 (401)
Q Consensus       210 ~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~  288 (401)
                      +     ..|...|++++|+ +++. ++++|+.||.|++||++... .++..+.+|...|.+++|+|+.     ..+|+++
T Consensus       273 ~-----~~~~~~v~~i~~~-p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~~h~~~v~~i~~sp~~-----~~~l~s~  340 (430)
T 2xyi_A          273 V-----DAHTAEVNCLSFN-PYSEFILATGSADKTVALWDLRNLK-LKLHSFESHKDEIFQVQWSPHN-----ETILASS  340 (430)
T ss_dssp             E-----ECCSSCEEEEEEC-SSCTTEEEEEETTSEEEEEETTCTT-SCSEEEECCSSCEEEEEECSSC-----TTEEEEE
T ss_pred             e-----ecCCCCeEEEEeC-CCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEeecCCCCEEEEEECCCC-----CCEEEEE
Confidence            2     3478899999999 5554 78999999999999998532 3577888999999999999984     4689999


Q ss_pred             eCCCeEEEEEeeC--------------CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342        289 SYDWSVKLWNIKE--------------NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD  345 (401)
Q Consensus       289 ~~d~~i~iwd~~~--------------~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~  345 (401)
                      +.|+.|+|||+..              .+.+..+.+|...|.+++|+|+++.++++++.||.|+||++...
T Consensus       341 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          341 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             ETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             eCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            9999999999987              35666777899999999999999878999999999999999753

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-35  Score=263.36  Aligned_cols=268  Identities=11%  Similarity=0.040  Sum_probs=210.0

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQI  143 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v  143 (401)
                      -...|.+++|+|||+++|+++          .|++|+  |.+.++.+    -+|...|.+++|+|+|        .++.+
T Consensus        14 ~~~~v~sv~~SpDG~~iASas----------~D~TV~--d~~~~~~l----~gh~~~v~~V~FsPdg--------~~~~~   69 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTF----------PDISIG--QPKYAKDI----NCNSKNLFHVKEFPLE--------FENKL   69 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECS----------SSEEEE--EECCCSCC----SSBGGGTEEEEEECCC--------CCCTT
T ss_pred             hhccEEEEEECCCCCEEEEEc----------CCceee--ccccccee----cCCCccEEEEEECCCC--------CcceE
Confidence            347899999999999999999          899999  76655444    3689999999999987        45555


Q ss_pred             EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceE
Q psy17342        144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL  223 (401)
Q Consensus       144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (401)
                      .+|+.+....       +. ..|...|.+++|  +|+|..|++++.||.|++||...   ...... ..  ..-....+.
T Consensus        70 ~~~~~~~~~~-------~~-~~~~~~V~~vaw--SPdG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~--~~~~~~sv~  133 (588)
T 2j04_A           70 DFELAQQNGL-------LN-SQPVCYPRVCKP--SPIDDWMAVLSNNGNVSVFKDNK---MLTNLD-SK--GNLSSRTYH  133 (588)
T ss_dssp             TTSCCCSSCS-------ST-TSCSCCEEEEEE--CSSSSCEEEEETTSCEEEEETTE---EEEECC-CS--SCSTTTCEE
T ss_pred             EEEeCCCceE-------ee-cCCCCcEEEEEE--CCCCCEEEEEeCCCcEEEEeCCc---eeeecc-CC--CccccccEE
Confidence            5555443221       11 256889999999  99999999999999999999542   111111 00  000123699


Q ss_pred             EEEeccCCCCeEEEEcCCceEEEEeCCCCCC--C---ceeee----cCCCCceeeeecCccCCCCCCCcEEEEEeCCCeE
Q psy17342        224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKA--G---NVECY----EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSV  294 (401)
Q Consensus       224 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--~---~~~~~----~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i  294 (401)
                      +++|+ |++++|++|+.||.|++|++.....  .   .+.++    .+|...|.+++|+|+      +  +++++.|++|
T Consensus       134 svafS-PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd------g--Laass~D~tV  204 (588)
T 2j04_A          134 CFEWN-PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED------V--LVAALSNNSV  204 (588)
T ss_dssp             EEEEC-SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT------E--EEEEETTCCE
T ss_pred             EEEEc-CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC------c--EEEEeCCCeE
Confidence            99999 8999999999999999999986532  0   24555    678899999999997      6  8888999999


Q ss_pred             EEEEeeCCCc---eEEEe-ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEe--cC
Q psy17342        295 KLWNIKENKP---VHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTW--TP  368 (401)
Q Consensus       295 ~iwd~~~~~~---~~~~~-~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--s~  368 (401)
                      ++||+..++.   ..++. +|...|.+++|+  +. .+|+++ ++.|++||+.+++..   ....+|...+..++|  +|
T Consensus       205 rlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~~~~---~~~~gh~~~V~~va~~~s~  277 (588)
T 2j04_A          205 FSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNYSIS---SLKTGSLENFHIIPLNHEK  277 (588)
T ss_dssp             EEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTTEEE---EEECSCCSCCCEEEETTCS
T ss_pred             EEEECCCCccccceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCCeEE---EEEcCCCceEEEEEeeeCC
Confidence            9999988764   35664 788899999999  44 788887 799999999875431   222378899999999  99


Q ss_pred             CCcEEEEEecCCcEEEEEec
Q psy17342        369 NGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       369 ~g~~l~~~~~dg~v~iw~~~  388 (401)
                      ++..|++++.||+ ++|...
T Consensus       278 d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          278 ESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             SCEEEEECSSCEE-EEEESS
T ss_pred             CCCEEEEEcCCCC-EEEeec
Confidence            9999999999999 999975

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.2e-35  Score=268.08  Aligned_cols=262  Identities=14%  Similarity=0.189  Sum_probs=201.2

Q ss_pred             EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCC-----ceeeccccccCCC------------CcEEEEEEee
Q psy17342        115 FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKT-----PVHRTPLSVMAHT------------HPVFCMSVIG  177 (401)
Q Consensus       115 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~-----~~~~~~~~~~~~~------------~~v~~~~~~~  177 (401)
                      ..+.+.|++++|+|++ .+|++|+.||.|+||++.+....     ........+.+|.            ..|.+++|  
T Consensus        25 ~~~~~~V~~v~~s~~g-~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~--  101 (447)
T 3dw8_B           25 VAEADIISTVEFNHSG-ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW--  101 (447)
T ss_dssp             CCGGGSEEEEEECSSS-SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE--
T ss_pred             ccccCcEEEEEECCCC-CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE--
Confidence            3457899999999977 79999999999999999876521     1111113456887            88999999  


Q ss_pred             cCCc--eEEEEEeCCCcEEEeeccCCCCCcc------------------cccc--------------ccccccCCccceE
Q psy17342        178 TQNA--HNLISISNDGRLCSWSLEMLSSPQE------------------TRDL--------------QYNNKQTKNLAVL  223 (401)
Q Consensus       178 ~~~~--~~l~s~~~dg~i~~wd~~~~~~~~~------------------~~~~--------------~~~~~~~~~~~v~  223 (401)
                      +|++  ..|++++.|+.|++||+........                  ...+              ......+|...|.
T Consensus       102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  181 (447)
T 3dw8_B          102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN  181 (447)
T ss_dssp             CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred             cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence            7777  7999999999999999874211000                  0000              0000245889999


Q ss_pred             EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCcee-------eecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEE
Q psy17342        224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVE-------CYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKL  296 (401)
Q Consensus       224 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~-------~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~i  296 (401)
                      +++|+ +++++|++| .|+.|++||++... ..+.       .+.+|...|.+++|+|+.     ..+|++|+.|+.|++
T Consensus       182 ~~~~~-~~~~~l~s~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~~l~s~~~dg~i~i  253 (447)
T 3dw8_B          182 SISIN-SDYETYLSA-DDLRINLWHLEITD-RSFNIVDIKPANMEELTEVITAAEFHPNS-----CNTFVYSSSKGTIRL  253 (447)
T ss_dssp             EEEEC-TTSSEEEEE-CSSEEEEEETTEEE-EEEEEEECCCSSGGGCCCCEEEEEECSSC-----TTEEEEEETTSCEEE
T ss_pred             EEEEc-CCCCEEEEe-CCCeEEEEECCCCC-ceeeeeecccccccccCcceEEEEECCCC-----CcEEEEEeCCCeEEE
Confidence            99999 789999998 79999999997322 1222       356899999999999982     289999999999999


Q ss_pred             EEeeCCCc----eEEEeecCC------------ceEEEEECCCCCcEEEEEecCCEEEEEeCCC-CCCCcceEEeecCCC
Q psy17342        297 WNIKENKP----VHSFNEFRD------------YVMDVQWSPINPALFATVEVAGRVDLWNLNL-DTEVPATSAIVEGAP  359 (401)
Q Consensus       297 wd~~~~~~----~~~~~~~~~------------~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~  359 (401)
                      ||+++++.    +..+..|..            .|.+++|+|+++ +|++++. +.|++||++. ++.+..+.   .|..
T Consensus       254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~~~~~~~~~---~~~~  328 (447)
T 3dw8_B          254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNMENRPVETYQ---VHEY  328 (447)
T ss_dssp             EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCCSSCSCCEE---SCGG
T ss_pred             EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCCccccceee---cccc
Confidence            99999887    788888776            899999999997 7888887 9999999987 66555554   2221


Q ss_pred             ---------------CeEEEEecCCCcEEEEEecCCcEEEEEeccCcc
Q psy17342        360 ---------------ALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGI  392 (401)
Q Consensus       360 ---------------~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~  392 (401)
                                     .+..++|+|++++|++|+.||.|++||+.+++.
T Consensus       329 ~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          329 LRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             GTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred             ccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence                           133499999999999999999999999998853

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-35  Score=282.08  Aligned_cols=261  Identities=17%  Similarity=0.211  Sum_probs=210.1

Q ss_pred             EEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC--ceEEEEEeCCC
Q psy17342        114 EFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN--AHNLISISNDG  191 (401)
Q Consensus       114 ~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg  191 (401)
                      ..+|.+.|++++|+|++ .+|++|+.||.|++||+........    ..+.+|.++|.+++|  +++  +.+|++++.||
T Consensus         5 l~gH~~~V~~l~~s~dg-~~latg~~dg~I~vwd~~~~~~~~~----~~l~~h~~~V~~l~~--s~~~~~~~l~s~s~Dg   77 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLI----DTLTGHEGPVWRVDW--AHPKFGTILASCSYDG   77 (753)
T ss_dssp             ---CCCCEEEECCCSSS-CCEEEEETTTEEEEEEEETTEEEEE----EEECCCSSCEEEEEE--CCTTSCSEEEEEETTS
T ss_pred             cccCcceeEEEEECCCC-CeEEEEECCCcEEEEecCCCCCccc----eeccCCcCceEEEEe--cCCCCCCEEEEEeCCC
Confidence            34689999999999987 6889999999999999975432221    345789999999999  666  89999999999


Q ss_pred             cEEEeeccCCCCCccccccccccccCCccceEEEEeccCC--CCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceee
Q psy17342        192 RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQND--VNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVG  269 (401)
Q Consensus       192 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~  269 (401)
                      .|++||+.... ......     ...|...|.+++|+ |+  +..+++|+.||.|++||++.........+.+|...|.+
T Consensus        78 ~I~vwd~~~~~-~~~~~~-----~~~h~~~V~~v~~s-p~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~  150 (753)
T 3jro_A           78 KVLIWKEENGR-WSQIAV-----HAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS  150 (753)
T ss_dssp             CEEEEEEETTE-EEEEEE-----ECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEE
T ss_pred             eEEEEECCCCc-cccccc-----ccCCCCCeEEEEEC-CCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEE
Confidence            99999998521 111222     34488899999999 67  89999999999999999987655556677889999999


Q ss_pred             eecCccCCC--------CCCCcEEEEEeCCCeEEEEEeeCC----CceEEEeecCCceEEEEECCC---CCcEEEEEecC
Q psy17342        270 LSSHRAQGH--------IDFSHLYLTSSYDWSVKLWNIKEN----KPVHSFNEFRDYVMDVQWSPI---NPALFATVEVA  334 (401)
Q Consensus       270 i~~~~~~~~--------~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~v~~~~~---~~~~l~~~~~d  334 (401)
                      +.|+|....        ++ +.++++|+.||.|++||++++    .+...+.+|...|.+++|+|+   +. ++++++.|
T Consensus       151 l~~~p~~~~~~~~~~~~~d-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s~D  228 (753)
T 3jro_A          151 ASWAPATIEEDGEHNGTKE-SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQD  228 (753)
T ss_dssp             EEECCCC---------CGG-GCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEESS
T ss_pred             EEecCcccccccccccCCC-CCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEecC
Confidence            999994000        00 689999999999999999987    455677789999999999999   65 89999999


Q ss_pred             CEEEEEeCCCCCCCcc--eEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        335 GRVDLWNLNLDTEVPA--TSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       335 ~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      |.|++||+.++.....  ......+...|++++|+|+|++|++++.||.|++|++.++
T Consensus       229 g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             SCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             CEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence            9999999988642211  1111346778999999999999999999999999999854

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-35  Score=280.59  Aligned_cols=256  Identities=16%  Similarity=0.191  Sum_probs=206.8

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-EecCCCeeEEEEeCCC-CceEEEEecC
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-FFCQSPVLSCCFAKFN-PYLILGGTYS  140 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~l~~g~~d  140 (401)
                      +|.+.|++++|+|++++|++++          .||.|+|||+.++....... ..|.++|++++|+|+. ..+|++|+.|
T Consensus         7 gH~~~V~~l~~s~dg~~latg~----------~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D   76 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCS----------SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   76 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEE----------TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT
T ss_pred             cCcceeEEEEECCCCCeEEEEE----------CCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC
Confidence            5789999999999999999999          79999999998433222222 3478999999999862 4799999999


Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC--ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN--AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      |.|++||+.++.....    ..+..|...|.+++|  +|+  +..+++++.||.|++||++..... ....     ..+|
T Consensus        77 g~I~vwd~~~~~~~~~----~~~~~h~~~V~~v~~--sp~~~~~~l~sgs~dg~I~vwdl~~~~~~-~~~~-----~~~~  144 (753)
T 3jro_A           77 GKVLIWKEENGRWSQI----AVHAVHSASVNSVQW--APHEYGPLLLVASSDGKVSVVEFKENGTT-SPII-----IDAH  144 (753)
T ss_dssp             SCEEEEEEETTEEEEE----EEECCCSSCEEEEEE--CCGGGCSEEEEEETTSEEEEEECCSSSCC-CCEE-----EECC
T ss_pred             CeEEEEECCCCccccc----ccccCCCCCeEEEEE--CCCCCCCEEEEEeCCCcEEEEEeecCCCc-ceeE-----eecC
Confidence            9999999988652222    234689999999999  787  899999999999999999863221 2222     2347


Q ss_pred             ccceEEEEeccC------------CCCeEEEEcCCceEEEEeCCCCCC--CceeeecCCCCceeeeecCccCCCCCCCcE
Q psy17342        219 NLAVLSLAFPQN------------DVNNFVVGCEDGNVYSACRHGNKA--GNVECYEGHEGPVVGLSSHRAQGHIDFSHL  284 (401)
Q Consensus       219 ~~~v~~~~~~~~------------~~~~l~~~~~d~~i~~~~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~  284 (401)
                      ...|.+++|+|.            ++..+++|+.||.|++||++....  .....+.+|..+|++++|+|+...   +.+
T Consensus       145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~---~~~  221 (753)
T 3jro_A          145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL---RSY  221 (753)
T ss_dssp             SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS---SEE
T ss_pred             CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCC---CCE
Confidence            889999999943            589999999999999999975432  345677899999999999997200   279


Q ss_pred             EEEEeCCCeEEEEEeeCCC-----ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        285 YLTSSYDWSVKLWNIKENK-----PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       285 l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      |++++.||.|++||+++++     .+.....|...|.+++|+|+++ ++++++.||.|++||+..
T Consensus       222 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          222 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             EEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC-CEEEECSSSCEECCBCCS
T ss_pred             EEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC-EEEEEcCCCEEEEEecCC
Confidence            9999999999999998864     3333445888999999999997 789999999999999984

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=4.6e-34  Score=254.42  Aligned_cols=296  Identities=14%  Similarity=0.134  Sum_probs=197.9

Q ss_pred             cceEEEEe---cCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCC--------CceEEEecCCCeeEEEEeC------
Q psy17342         66 RNVTYMDW---STQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKT--------TPEFEFFCQSPVLSCCFAK------  128 (401)
Q Consensus        66 ~~v~~~~~---~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--------~~~~~~~~~~~v~~~~~~~------  128 (401)
                      ....++.|   +|++..+++++          .++.|.+|+......        .......+...+..+.|++      
T Consensus        16 ~~p~~~~w~~~~~~~~~l~a~g----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (393)
T 4gq1_A           16 VRPYTTTWCSQSPSCSNLLAIG----------HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSE   85 (393)
T ss_dssp             CCEEEEEECTTSGGGTTEEEEE----------ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEEC
T ss_pred             CCCeEEEEeCCCCCCCCEEEEE----------CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccc
Confidence            34556666   45666677777          488999998643211        1111223445555555543      


Q ss_pred             -------------CCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEee------cCCceEEEEEeC
Q psy17342        129 -------------FNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG------TQNAHNLISISN  189 (401)
Q Consensus       129 -------------~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~l~s~~~  189 (401)
                                   ....+|++|+.|++|+|||.+.+...... ....+.+|.+.|++++|.+      ..++++|++++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~-~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~  164 (393)
T 4gq1_A           86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQH-VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD  164 (393)
T ss_dssp             C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEE-EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred             cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceee-eecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence                         22357999999999999999877543211 1134679999999999932      127899999999


Q ss_pred             CCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCc-------------
Q psy17342        190 DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGN-------------  256 (401)
Q Consensus       190 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-------------  256 (401)
                      |++|++||++...   ....+     ..|...+.+++|+|.+..+|++|+.|+.|++||++......             
T Consensus       165 D~tv~~Wd~~~~~---~~~~~-----~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~  236 (393)
T 4gq1_A          165 DCTLIIWRLTDEG---PILAG-----YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL  236 (393)
T ss_dssp             TSEEEEEEEETTE---EEEEE-----EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCS
T ss_pred             CCeEEEEECCCCc---eeeee-----cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceE
Confidence            9999999997522   22222     23778999999995455689999999999999987543210             


Q ss_pred             ----------eeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECC----
Q psy17342        257 ----------VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP----  322 (401)
Q Consensus       257 ----------~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~----  322 (401)
                                .....+|...+.++.|.+..     +..+++++.|+++++||+..++....+..|...+..+.+.|    
T Consensus       237 ~s~~~~~~~~~~~~~~~~~~v~~v~~~~~d-----g~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~  311 (393)
T 4gq1_A          237 LTLNTLPLVNTCHSSGIASSLANVRWIGSD-----GSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQG  311 (393)
T ss_dssp             EEEESGGGC------CCSSSCSEEEEETTT-----TCEEEEECTTSEEEEEEC-------------------CCSCSEEE
T ss_pred             EecccccceeeeecccccccceeeeeecCC-----CCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccc
Confidence                      01123677888999987433     78999999999999999988877776666655554444433    


Q ss_pred             ---------------CCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342        323 ---------------INPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV  387 (401)
Q Consensus       323 ---------------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~  387 (401)
                                     .+..++++|+.||.|++||+.++......   ..|..+|++++|+|||++||+++.+| +.+|.+
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~---~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          312 ISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP---IQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             ECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE---EECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             ccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe---cCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence                           23346778889999999999988765443   46778999999999999999998776 778877


Q ss_pred             cc
Q psy17342        388 GE  389 (401)
Q Consensus       388 ~~  389 (401)
                      ..
T Consensus       388 ~g  389 (393)
T 4gq1_A          388 MG  389 (393)
T ss_dssp             GG
T ss_pred             eC
Confidence            54

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.8e-34  Score=258.86  Aligned_cols=268  Identities=15%  Similarity=0.250  Sum_probs=213.6

Q ss_pred             hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH   86 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   86 (401)
                      +..+++|+.||.|++||......+                        ..+    ..|...|.+++|  +++.|++++  
T Consensus       143 ~~~l~~g~~dg~i~iwd~~~~~~~------------------------~~~----~~h~~~v~~l~~--~~~~l~sg~--  190 (435)
T 1p22_A          143 DQKIVSGLRDNTIKIWDKNTLECK------------------------RIL----TGHTGSVLCLQY--DERVIITGS--  190 (435)
T ss_dssp             SSEEEEEESSSCEEEEESSSCCEE------------------------EEE----CCCSSCEEEEEC--CSSEEEEEE--
T ss_pred             CCEEEEEeCCCeEEEEeCCCCeEE------------------------EEE----cCCCCcEEEEEE--CCCEEEEEc--
Confidence            568999999999999997654411                        001    146688999999  677899999  


Q ss_pred             cCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCC
Q psy17342         87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH  166 (401)
Q Consensus        87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  166 (401)
                              .||.|++||+.+++....+ ..|...|.+++|++   .++++|+.||.|++||+.+.......   ..+.+|
T Consensus       191 --------~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~  255 (435)
T 1p22_A          191 --------SDSTVRVWDVNTGEMLNTL-IHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLR---RVLVGH  255 (435)
T ss_dssp             --------TTSCEEEEESSSCCEEEEE-CCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEE---EEECCC
T ss_pred             --------CCCeEEEEECCCCcEEEEE-cCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceee---eEecCC
Confidence                    7999999999987765443 35788999999974   58999999999999999887654221   224689


Q ss_pred             CCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEE
Q psy17342        167 THPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYS  246 (401)
Q Consensus       167 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~  246 (401)
                      ...|.+++|    ++.++++++.||.|++||+++..   ....     ..+|...|.+++++   +..+++|+.||.|++
T Consensus       256 ~~~v~~~~~----~~~~l~s~~~dg~i~vwd~~~~~---~~~~-----~~~~~~~v~~~~~~---~~~l~~g~~dg~i~i  320 (435)
T 1p22_A          256 RAAVNVVDF----DDKYIVSASGDRTIKVWNTSTCE---FVRT-----LNGHKRGIACLQYR---DRLVVSGSSDNTIRL  320 (435)
T ss_dssp             SSCEEEEEE----ETTEEEEEETTSEEEEEETTTCC---EEEE-----EECCSSCEEEEEEE---TTEEEEEETTSCEEE
T ss_pred             CCcEEEEEe----CCCEEEEEeCCCeEEEEECCcCc---EEEE-----EcCCCCcEEEEEeC---CCEEEEEeCCCeEEE
Confidence            999999998    67899999999999999998632   2222     23478899999985   579999999999999


Q ss_pred             EeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC---------ceEEEeecCCceEE
Q psy17342        247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK---------PVHSFNEFRDYVMD  317 (401)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---------~~~~~~~~~~~v~~  317 (401)
                      ||++.  ...+..+.+|...|.++++.        +.+|++|+.||.|++||+++++         ++..+..|.+.|.+
T Consensus       321 wd~~~--~~~~~~~~~h~~~v~~~~~~--------~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~  390 (435)
T 1p22_A          321 WDIEC--GACLRVLEGHEELVRCIRFD--------NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR  390 (435)
T ss_dssp             EETTT--CCEEEEECCCSSCEEEEECC--------SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCC
T ss_pred             EECCC--CCEEEEEeCCcCcEEEEEec--------CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEE
Confidence            99984  45788899999999999993        6899999999999999998766         78889999999999


Q ss_pred             EEECCCCCcEEEEEecCCEEEEEeCCCCCCCc
Q psy17342        318 VQWSPINPALFATVEVAGRVDLWNLNLDTEVP  349 (401)
Q Consensus       318 v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  349 (401)
                      ++|  ++. +|++++.||.|++||+.+.....
T Consensus       391 l~~--~~~-~l~s~s~Dg~i~iwd~~~~~~~~  419 (435)
T 1p22_A          391 LQF--DEF-QIVSSSHDDTILIWDFLNDPAAQ  419 (435)
T ss_dssp             EEE--CSS-CEEECCSSSEEEEEC--------
T ss_pred             EEe--CCC-EEEEEeCCCEEEEEECCCCCCcc
Confidence            999  554 68999999999999998765443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=6.4e-34  Score=249.11  Aligned_cols=275  Identities=11%  Similarity=0.152  Sum_probs=220.6

Q ss_pred             chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCC-Ce
Q psy17342          2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHP-EL   80 (401)
Q Consensus         2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l   80 (401)
                      .|..-+..+++|+.||.+++|+.......                    ... ...    ..|...|.+++|+|+++ .|
T Consensus        18 ~~s~~~~~l~~~~~d~~v~iw~~~~~~~~--------------------~~~-~~~----~~~~~~v~~~~~~~~~~~~l   72 (342)
T 1yfq_A           18 KIIPSKSLLLITSWDGSLTVYKFDIQAKN--------------------VDL-LQS----LRYKHPLLCCNFIDNTDLQI   72 (342)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEEEETTTTE--------------------EEE-EEE----EECSSCEEEEEEEESSSEEE
T ss_pred             EEcCCCCEEEEEcCCCeEEEEEeCCCCcc--------------------ccc-eee----eecCCceEEEEECCCCCcEE
Confidence            46667889999999999999998655310                    000 111    14668899999999999 89


Q ss_pred             EEEEeccCCCCCCCCCcEEEEEeC-cCCCCCceEEEe--cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC-------
Q psy17342         81 LLASYHRNKEAPNEPDGVCLIWNT-KFKKTTPEFEFF--CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV-------  150 (401)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~v~iwd~-~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~-------  150 (401)
                      ++++          .|+.|++||+ .+++.  .....  |...|.+++|+| + .++++++.|+.|++||+++       
T Consensus        73 ~~~~----------~dg~i~~wd~~~~~~~--~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~  138 (342)
T 1yfq_A           73 YVGT----------VQGEILKVDLIGSPSF--QALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIA  138 (342)
T ss_dssp             EEEE----------TTSCEEEECSSSSSSE--EECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred             EEEc----------CCCeEEEEEeccCCce--EeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEccccccccccc
Confidence            9999          7999999999 76543  23344  788999999999 5 7899999999999999986       


Q ss_pred             --CCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccC-CCCCccccccccccccCCccceEEEEe
Q psy17342        151 --QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEM-LSSPQETRDLQYNNKQTKNLAVLSLAF  227 (401)
Q Consensus       151 --~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~  227 (401)
                        .+..       ....|...|.+++|  ++++  +++++.|+.|++||++. ........      ...+...+.+++|
T Consensus       139 ~~~~~~-------~~~~~~~~v~~~~~--~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~~i~~i~~  201 (342)
T 1yfq_A          139 VKNLNS-------NNTKVKNKIFTMDT--NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIE------ESGLKYQIRDVAL  201 (342)
T ss_dssp             EEESCS-------SSSSSCCCEEEEEE--CSSE--EEEEESTTEEEEEESSCCTTCCCEEE------ECSCSSCEEEEEE
T ss_pred             ccCCee-------eEEeeCCceEEEEe--cCCc--EEEEeCCCeEEEEECCccccccceee------ecCCCCceeEEEE
Confidence              4322       12348899999999  7666  99999999999999985 33222111      2236778999999


Q ss_pred             ccC-CCCeEEEEcCCceEEEEeCCCC--C--CCceeeecCCCC---------ceeeeecCccCCCCCCCcEEEEEeCCCe
Q psy17342        228 PQN-DVNNFVVGCEDGNVYSACRHGN--K--AGNVECYEGHEG---------PVVGLSSHRAQGHIDFSHLYLTSSYDWS  293 (401)
Q Consensus       228 ~~~-~~~~l~~~~~d~~i~~~~~~~~--~--~~~~~~~~~~~~---------~v~~i~~~~~~~~~~~~~~l~s~~~d~~  293 (401)
                      + + +++++++++.||.|++|+++..  .  ......+..|..         +|.+++|+|+      +++|++++.||.
T Consensus       202 ~-~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~------~~~l~~~~~dg~  274 (342)
T 1yfq_A          202 L-PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR------HKFLYTAGSDGI  274 (342)
T ss_dssp             C-SGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT------TCCEEEEETTSC
T ss_pred             C-CCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCC------CCEEEEecCCce
Confidence            9 7 8999999999999999998754  1  245677777765         9999999998      789999999999


Q ss_pred             EEEEEeeCCCceEEEeec-CCceEEEEECCCCCcEEEEEecCCE-EEEEeC
Q psy17342        294 VKLWNIKENKPVHSFNEF-RDYVMDVQWSPINPALFATVEVAGR-VDLWNL  342 (401)
Q Consensus       294 i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~~~~~~l~~~~~d~~-i~iwd~  342 (401)
                      |++||+.+++++..+..| ...|.+++  |+++ +|++++.||. .+.+..
T Consensus       275 i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~-~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          275 ISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDN-ILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             EEEEETTTTEEEEECCCCSSSEEEEEE--ECSS-EEEEEEECTHHHHCSSS
T ss_pred             EEEEcCccHhHhhhhhcccCCCceEec--CCCC-eEEEEecCCcccccccc
Confidence            999999999999999998 99999999  9987 8999999998 555543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-35  Score=261.22  Aligned_cols=312  Identities=12%  Similarity=0.077  Sum_probs=222.9

Q ss_pred             chhhhhccccccccccccccccccCCCCCCCCccc---cccccCCCCCCCCCceeeeeee--ccccccccceEEEEecCC
Q psy17342          2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQD---LQFDMTGDEKSSTKLSFCRQFF--DEKWSKNRNVTYMDWSTQ   76 (401)
Q Consensus         2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~   76 (401)
                      +|+.-|..+||++.|++||  |....+.+..-+..   .+|...+   ....+.++...-  .....|...|.+++|||+
T Consensus        22 ~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg---~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPd   96 (588)
T 2j04_A           22 TWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLE---FENKLDFELAQQNGLLNSQPVCYPRVCKPSPI   96 (588)
T ss_dssp             EECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCC---CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSS
T ss_pred             EECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCC---CcceEEEEeCCCceEeecCCCCcEEEEEECCC
Confidence            6888999999999999999  54333333110111   1133333   233333332211  112245688999999999


Q ss_pred             CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCC-----CeeEEEEeCCCCceEEEEecCCeEEEEECCCC
Q psy17342         77 HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS-----PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQ  151 (401)
Q Consensus        77 ~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~  151 (401)
                      |+.||+++          .||.|+|||.++  .+..+  .|..     .|.+++|||+| ++|++|+.||+|+|||+.++
T Consensus        97 G~~LAs~s----------~dg~V~iwd~~~--~l~~l--~~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~  161 (588)
T 2j04_A           97 DDWMAVLS----------NNGNVSVFKDNK--MLTNL--DSKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKN  161 (588)
T ss_dssp             SSCEEEEE----------TTSCEEEEETTE--EEEEC--CCSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCC
T ss_pred             CCEEEEEe----------CCCcEEEEeCCc--eeeec--cCCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCC
Confidence            99999999          899999999653  22222  2333     59999999987 89999999999999999886


Q ss_pred             CCCc-----eeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEE
Q psy17342        152 KKTP-----VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLA  226 (401)
Q Consensus       152 ~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  226 (401)
                      ....     .........+|...|.+++|  +|++  +++++.|+++++|++...........+.    .+|...|.+++
T Consensus       162 ~l~~~~~i~l~ti~~~~~gh~~~V~sVaw--SPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~----~~h~~~V~sva  233 (588)
T 2j04_A          162 SENTPEFYFESSIRLSDAGSKDWVTHIVW--YEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ----NASRRKITDLK  233 (588)
T ss_dssp             TTTCCCCEEEEEEECSCTTCCCCEEEEEE--ETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE----CCCSSCCCCEE
T ss_pred             ccccccceeeeeeecccccccccEEEEEE--cCCc--EEEEeCCCeEEEEECCCCccccceeeec----ccccCcEEEEE
Confidence            5311     11111123678899999999  8998  8899999999999997532110011121    23778899999


Q ss_pred             eccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeec--CccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc
Q psy17342        227 FPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSS--HRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP  304 (401)
Q Consensus       227 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  304 (401)
                      |+   ++.+++++ ++.|++|+..+..  ......+|...|.++++  +|+      +..+++++.||+ ++|...    
T Consensus       234 Fs---g~~LASa~-~~tIkLWd~~~~~--~~~~~~gh~~~V~~va~~~s~d------~~~La~a~edG~-klw~~d----  296 (588)
T 2j04_A          234 IV---DYKVVLTC-PGYVHKIDLKNYS--ISSLKTGSLENFHIIPLNHEKE------STILLMSNKTSY-KVLLED----  296 (588)
T ss_dssp             EE---TTEEEEEC-SSEEEEEETTTTE--EEEEECSCCSCCCEEEETTCSS------CEEEEECSSCEE-EEEESS----
T ss_pred             EE---CCEEEEEe-CCeEEEEECCCCe--EEEEEcCCCceEEEEEeeeCCC------CCEEEEEcCCCC-EEEeec----
Confidence            98   47888887 6999999997543  21223389999999999  888      789999999999 999986    


Q ss_pred             eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEec
Q psy17342        305 VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDE  378 (401)
Q Consensus       305 ~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  378 (401)
                                  .++++|++. ++++  .|+++++|+...+. ...+    .+...|.+++|||||+.+|+++.
T Consensus       297 ------------~~~~spd~~-l~a~--~d~~v~lW~~~g~~-l~~~----~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          297 ------------ELHVTADNI-IAPY--LEKKFKKWSTIWNE-FNNY----ETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             ------------SEEEECCCS-SHHH--HHHHHHHTTTTTTS-SSSS----CCEEEEEEEEECTTSSEEEEEEE
T ss_pred             ------------cEEECCCce-EEEE--cCCEEEEEECCCCc-eeee----ccceEEEEEEECCCCCEEEEEEe
Confidence                        266999996 5554  49999999986543 2322    33556999999999999998864

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-34  Score=250.32  Aligned_cols=275  Identities=11%  Similarity=0.010  Sum_probs=209.0

Q ss_pred             EEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC
Q psy17342         71 MDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV  150 (401)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~  150 (401)
                      ..+.+++..|++|+          .||.|++||+.+++.+..+.   ...|.++.|+|.    +++|+.|++|++|+...
T Consensus        42 ~~~~~d~~~l~sg~----------~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~  104 (343)
T 3lrv_A           42 KSMYYDKWVCMCRC----------EDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA----IISRGPCNRLLLLYPGN  104 (343)
T ss_dssp             SSSSEEEEEEEEEE----------ETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS----EEEECSTTEEEEEETTT
T ss_pred             hhhcCCCCEEEEEC----------CCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc----eEEecCCCeEEEEEccC
Confidence            34556788899999          79999999999887665554   467888889885    88999999999998764


Q ss_pred             CC------CCceeeccccccCCCCcEEEEEEeecC--CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        151 QK------KTPVHRTPLSVMAHTHPVFCMSVIGTQ--NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       151 ~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      ..      ......  .....|.++|.+++|  +|  ++.++++++.||+|++||++.... ...  .    ...+...+
T Consensus       105 ~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~--~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~--~----~~~~~~~i  173 (343)
T 3lrv_A          105 QITILDSKTNKVLR--EIEVDSANEIIYMYG--HNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIV--H----SAKSDVEY  173 (343)
T ss_dssp             EEEEEETTTCCEEE--EEECCCSSCEEEEEC--CC---CCEEEEEETTCCEEEEESSSSCE-EEE--E----CCCSSCCC
T ss_pred             ceEEeecCCcceeE--EeecCCCCCEEEEEc--CCCCCCCEEEEEeCCCcEEEEECCCCcE-EEE--E----ecCCCCce
Confidence            21      111011  112367789999999  88  999999999999999999986322 111  1    12255579


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCce-eeecC-CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEee
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNV-ECYEG-HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIK  300 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~-~~~~~-~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  300 (401)
                      .+++|+ |++.+|++|+.||.|++||++...  .. ..+.. |.++|++++|+|+      +.+|++++ |+.|++||++
T Consensus       174 ~~~~~~-pdg~~lasg~~dg~i~iwd~~~~~--~~~~~~~~~h~~~v~~l~fs~~------g~~l~s~~-~~~v~iwd~~  243 (343)
T 3lrv_A          174 SSGVLH-KDSLLLALYSPDGILDVYNLSSPD--QASSRFPVDEEAKIKEVKFADN------GYWMVVEC-DQTVVCFDLR  243 (343)
T ss_dssp             CEEEEC-TTSCEEEEECTTSCEEEEESSCTT--SCCEECCCCTTSCEEEEEECTT------SSEEEEEE-SSBEEEEETT
T ss_pred             EEEEEC-CCCCEEEEEcCCCEEEEEECCCCC--CCccEEeccCCCCEEEEEEeCC------CCEEEEEe-CCeEEEEEcC
Confidence            999999 899999999999999999998544  34 56777 9999999999998      79999999 5599999999


Q ss_pred             CCCceEEEee---cCCceE--EEEECCCCCcEEEEEec-CCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecC---CCc
Q psy17342        301 ENKPVHSFNE---FRDYVM--DVQWSPINPALFATVEV-AGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTP---NGT  371 (401)
Q Consensus       301 ~~~~~~~~~~---~~~~v~--~v~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~  371 (401)
                      +++.+..+..   |...+.  +++|+|+++ +|++++. |+.|++|++.........       .++..++|++   +++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~s~~d~~i~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  315 (343)
T 3lrv_A          244 KDVGTLAYPTYTIPEFKTGTVTYDIDDSGK-NMIAYSNESNSLTIYKFDKKTKNWTK-------DEESALCLQSDTADFT  315 (343)
T ss_dssp             SSTTCBSSCCCBC-----CCEEEEECTTSS-EEEEEETTTTEEEEEEECTTTCSEEE-------EEEEECCC----CCCC
T ss_pred             CCCcceeecccccccccccceEEEECCCCC-EEEEecCCCCcEEEEEEcccccceEe-------cCceeEecCccccccc
Confidence            9877655443   333443  699999998 7888777 999999999765533221       4577889998   889


Q ss_pred             EEEEEecCCcEEEEEeccCc
Q psy17342        372 QLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       372 ~l~~~~~dg~v~iw~~~~~~  391 (401)
                      .|++++.||.+.++-.....
T Consensus       316 ~l~~~~~d~~~~~~~~~~~~  335 (343)
T 3lrv_A          316 DMDVVCGDGGIAAILKTNDS  335 (343)
T ss_dssp             EEEEEEETTEEEEEEECSSE
T ss_pred             eeEEEecCCceEEEEecCCe
Confidence            99999999999988766654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=249.34  Aligned_cols=275  Identities=15%  Similarity=0.212  Sum_probs=211.7

Q ss_pred             hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH   86 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   86 (401)
                      +..+++|+.||.+++|+......                      .+...+    ..|...|.+++|+|++++|++++  
T Consensus        54 g~~l~~~~~dg~i~iw~~~~~~~----------------------~~~~~~----~~h~~~v~~~~~~~~~~~l~s~~--  105 (368)
T 3mmy_A           54 GNFLIAGSWANDVRCWEVQDSGQ----------------------TIPKAQ----QMHTGPVLDVCWSDDGSKVFTAS--  105 (368)
T ss_dssp             SEEEEEEETTSEEEEEEECTTSC----------------------EEEEEE----EECSSCEEEEEECTTSSEEEEEE--
T ss_pred             ceEEEEECCCCcEEEEEcCCCCc----------------------eeEEEe----ccccCCEEEEEECcCCCEEEEEc--
Confidence            58999999999999999875320                      000111    13668899999999999999999  


Q ss_pred             cCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEE--eCCCCceEEEEecCCeEEEEECCCCCCCceeecccccc
Q psy17342         87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCF--AKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVM  164 (401)
Q Consensus        87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~  164 (401)
                              .|+.|++||+.+++...  ...|...|.+++|  +|++ .+|++++.||.|++||+++++....      +.
T Consensus       106 --------~dg~v~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~------~~  168 (368)
T 3mmy_A          106 --------CDKTAKMWDLSSNQAIQ--IAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMV------LQ  168 (368)
T ss_dssp             --------TTSEEEEEETTTTEEEE--EEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEE------EE
T ss_pred             --------CCCcEEEEEcCCCCcee--eccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEE------Ee
Confidence                    79999999999766443  4568999999999  7765 7899999999999999998765432      22


Q ss_pred             CCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCe----EEEEcC
Q psy17342        165 AHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNN----FVVGCE  240 (401)
Q Consensus       165 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----l~~~~~  240 (401)
                      .+ ..+.++.+  .  ...+++++.++.+.+|+++..........      ......+.++++. ++...    +++++.
T Consensus       169 ~~-~~~~~~~~--~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  236 (368)
T 3mmy_A          169 LP-ERCYCADV--I--YPMAVVATAERGLIVYQLENQPSEFRRIE------SPLKHQHRCVAIF-KDKQNKPTGFALGSI  236 (368)
T ss_dssp             CS-SCEEEEEE--E--TTEEEEEEGGGCEEEEECSSSCEEEEECC------CSCSSCEEEEEEE-ECTTSCEEEEEEEET
T ss_pred             cC-CCceEEEe--c--CCeeEEEeCCCcEEEEEeccccchhhhcc------ccccCCCceEEEc-ccCCCCCCeEEEecC
Confidence            33 46677766  3  44788899999999999975322211111      1133345555554 33333    999999


Q ss_pred             CceEEEEeCCCCCC-CceeeecCCCC------------ceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEE
Q psy17342        241 DGNVYSACRHGNKA-GNVECYEGHEG------------PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHS  307 (401)
Q Consensus       241 d~~i~~~~~~~~~~-~~~~~~~~~~~------------~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  307 (401)
                      |+.|++|+++.... .....+.+|..            +|++++|+|+      +++|++++.||.|++||+++++++..
T Consensus       237 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~------~~~l~s~~~dg~i~iwd~~~~~~~~~  310 (368)
T 3mmy_A          237 EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPV------HGTLATVGSDGRFSFWDKDARTKLKT  310 (368)
T ss_dssp             TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTT------TCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecC------CCEEEEEccCCeEEEEECCCCcEEEE
Confidence            99999999986533 45667777776            7999999998      78999999999999999999999999


Q ss_pred             EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342        308 FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD  345 (401)
Q Consensus       308 ~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~  345 (401)
                      +..|...|.+++|+|+++ +|++++.|+..+.|++...
T Consensus       311 ~~~~~~~v~~~~~s~~g~-~l~~~s~d~~~~~~~~~~~  347 (368)
T 3mmy_A          311 SEQLDQPISACCFNHNGN-IFAYASSYDWSKGHEFYNP  347 (368)
T ss_dssp             CCCCSSCEEEEEECTTSS-CEEEEECCCSTTCGGGCCT
T ss_pred             ecCCCCCceEEEECCCCC-eEEEEecccccccccccCC
Confidence            999999999999999997 7888888886666655443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.2e-33  Score=246.05  Aligned_cols=299  Identities=12%  Similarity=0.138  Sum_probs=204.5

Q ss_pred             CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecC--CCC
Q psy17342          1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWST--QHP   78 (401)
Q Consensus         1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~   78 (401)
                      |.|..-+..+++|+.||.+++|++.......                    .....+    ..|...|.+++|+|  +++
T Consensus        17 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--------------------~~~~~~----~~~~~~v~~~~~~~~~d~~   72 (351)
T 3f3f_A           17 VVYDFYGRHVATCSSDQHIKVFKLDKDTSNW--------------------ELSDSW----RAHDSSIVAIDWASPEYGR   72 (351)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEEECSSSCCE--------------------EEEEEE----ECCSSCEEEEEECCGGGCS
T ss_pred             EEEcCCCCEEEEeeCCCeEEEEECCCCCCcc--------------------eeccee----ccCCCcEEEEEEcCCCCCC
Confidence            3566678899999999999999987554111                    111111    14668999999999  588


Q ss_pred             CeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC--------ceEEEecCCCeeEEEEeCC--CCceEEEEecCCeEEEEEC
Q psy17342         79 ELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT--------PEFEFFCQSPVLSCCFAKF--NPYLILGGTYSGQIVLWDT  148 (401)
Q Consensus        79 ~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~--------~~~~~~~~~~v~~~~~~~~--~~~~l~~g~~dg~v~iw~~  148 (401)
                      +|++++          .|+.|++||+.++...        ......|...|.+++|+|+  + .++++++.||.|++||+
T Consensus        73 ~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~  141 (351)
T 3f3f_A           73 IIASAS----------YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDA  141 (351)
T ss_dssp             EEEEEE----------TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEEC
T ss_pred             EEEEEc----------CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecC
Confidence            999999          7999999999875421        1122347889999999997  5 78999999999999999


Q ss_pred             CCCCCCceee-------ccccccCCCCcEEEEEEeecCC---ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342        149 RVQKKTPVHR-------TPLSVMAHTHPVFCMSVIGTQN---AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       149 ~~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~---~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      ++.+......       .......|...+.+++|  +|+   +..+++++.|+.+.+|+... ........     ..+|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~h  213 (351)
T 3f3f_A          142 LEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW--CPSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAK-----LPGH  213 (351)
T ss_dssp             SSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEE--CCCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEE-----CCCC
T ss_pred             CChHHhccccccccccccccccCCcccceeEEEe--ccCCCCCcEEEEecCCCcEEEEccCC-Cceeeeee-----cCCC
Confidence            8876543211       11122378889999999  776   88999999999997777654 22212222     3458


Q ss_pred             ccceEEEEeccCCC----CeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEE----EEeC
Q psy17342        219 NLAVLSLAFPQNDV----NNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL----TSSY  290 (401)
Q Consensus       219 ~~~v~~~~~~~~~~----~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~----s~~~  290 (401)
                      ...|++++|+ +++    .+|++|+.||.|++||++....  ......+...+......+.      ...+.    .+..
T Consensus       214 ~~~i~~~~~~-p~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  284 (351)
T 3f3f_A          214 KSLIRSISWA-PSIGRWYQLIATGCKDGRIRIFKITEKLS--PLASEESLTNSNMFDNSAD------VDMDAQGRSDSNT  284 (351)
T ss_dssp             CSCEEEEEEC-CCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------------
T ss_pred             CcceeEEEEC-CCCCCcceEEEEEcCCCeEEEEeCCCCcC--ccccCCcccceeccCCCcc------ccccccccccccc
Confidence            8899999999 676    7999999999999999974322  2222222222223333322      12222    2334


Q ss_pred             CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceE
Q psy17342        291 DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATS  352 (401)
Q Consensus       291 d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  352 (401)
                      ...+.+|+....+++..+.+|...|++++|+|+++ +|++++.||.|++||+.+++....+.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~  345 (351)
T 3f3f_A          285 EEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGT-ILSSAGDDGKVRLWKATYSNEFKCMS  345 (351)
T ss_dssp             ------CCSEEEEEEEEECTTSSCEEEEEECSSSC-CEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred             ceeeeecccccccEEEEEecccccEEEEEEcCCCC-EEEEecCCCcEEEEecCcCcchhhee
Confidence            55677787777888889999999999999999997 89999999999999999877654443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.1e-32  Score=244.09  Aligned_cols=315  Identities=10%  Similarity=0.051  Sum_probs=227.7

Q ss_pred             ccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEecc
Q psy17342          8 ESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHR   87 (401)
Q Consensus         8 ~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~   87 (401)
                      ..+++++.|+.+++||....+.+.                        .+     .+...+.+++|+|+++.+++++   
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~------------------------~~-----~~~~~~~~~~~s~dg~~l~~~~---   50 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTA------------------------TI-----PVGSNPMGAVISPDGTKVYVAN---   50 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEE------------------------EE-----ECSSSEEEEEECTTSSEEEEEE---
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEE------------------------Ee-----ecCCCcceEEECCCCCEEEEEC---
Confidence            457889999999999986554110                        01     1224589999999999885555   


Q ss_pred             CCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCC
Q psy17342         88 NKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHT  167 (401)
Q Consensus        88 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  167 (401)
                            +.++.|++||+.+++....+  .+...+.+++|+|++..++++++.++.|++||+.+++....       ..+.
T Consensus        51 ------~~d~~i~v~d~~~~~~~~~~--~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~-------~~~~  115 (391)
T 1l0q_A           51 ------AHSNDVSIIDTATNNVIATV--PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT-------VKTG  115 (391)
T ss_dssp             ------GGGTEEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-------EECS
T ss_pred             ------CCCCeEEEEECCCCeEEEEE--ECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEE-------EeCC
Confidence                  26899999999877665443  33459999999998865667777789999999988764322       2244


Q ss_pred             CcEEEEEEeecCCceEE-EEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeE-EEEcCCceEE
Q psy17342        168 HPVFCMSVIGTQNAHNL-ISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNF-VVGCEDGNVY  245 (401)
Q Consensus       168 ~~v~~~~~~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d~~i~  245 (401)
                      ..+.+++|  +++++.+ ++++.|+.|++||+.... ...  .+.      ....+.+++|+ ++++.+ ++++.++.|+
T Consensus       116 ~~~~~~~~--s~dg~~l~~~~~~~~~v~~~d~~~~~-~~~--~~~------~~~~~~~~~~~-~dg~~l~~~~~~~~~v~  183 (391)
T 1l0q_A          116 KSPLGLAL--SPDGKKLYVTNNGDKTVSVINTVTKA-VIN--TVS------VGRSPKGIAVT-PDGTKVYVANFDSMSIS  183 (391)
T ss_dssp             SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTE-EEE--EEE------CCSSEEEEEEC-TTSSEEEEEETTTTEEE
T ss_pred             CCcceEEE--CCCCCEEEEEeCCCCEEEEEECCCCc-EEE--EEe------cCCCcceEEEC-CCCCEEEEEeCCCCEEE
Confidence            57899999  8999877 688889999999987521 111  111      23457899999 777776 6778899999


Q ss_pred             EEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe---CCCeEEEEEeeCCCceEEEeecCCceEEEEECC
Q psy17342        246 SACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS---YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP  322 (401)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~  322 (401)
                      +||++..  +....+. +...+.+++|+|+      ++++++++   .++.|++||+++++++..+..|. .+.+++|+|
T Consensus       184 ~~d~~~~--~~~~~~~-~~~~~~~~~~~~~------g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~  253 (391)
T 1l0q_A          184 VIDTVTN--SVIDTVK-VEAAPSGIAVNPE------GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP  253 (391)
T ss_dssp             EEETTTT--EEEEEEE-CSSEEEEEEECTT------SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT
T ss_pred             EEECCCC--eEEEEEe-cCCCccceEECCC------CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc
Confidence            9999754  3444444 5678899999998      67777777   68999999999999888888755 578999999


Q ss_pred             CCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecC------------CCCeEEEEecCCC----------cEEEEEecCC
Q psy17342        323 INPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG------------APALSRVTWTPNG----------TQLCVGDEKG  380 (401)
Q Consensus       323 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------------~~~v~~~~~s~~g----------~~l~~~~~dg  380 (401)
                      +++.++++++.|+.|++||+.+++....+......            ........|+.+.          ..+...+.|.
T Consensus       254 dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~  333 (391)
T 1l0q_A          254 DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDA  333 (391)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSC
T ss_pred             CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCc
Confidence            99866688889999999999987654443211000            0000111222221          3456667788


Q ss_pred             cEEEEEeccCc
Q psy17342        381 AITMFDVGEVG  391 (401)
Q Consensus       381 ~v~iw~~~~~~  391 (401)
                      .+++|++.++.
T Consensus       334 ~~~~W~~~~g~  344 (391)
T 1l0q_A          334 TEWKWDFGDGS  344 (391)
T ss_dssp             SEEEEECSSSC
T ss_pred             eEEEEECCCCc
Confidence            99999998764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=4.8e-32  Score=245.10  Aligned_cols=281  Identities=12%  Similarity=0.041  Sum_probs=215.4

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE----EecCCCeeEEEEeCCCCceEEEEecCC
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE----FFCQSPVLSCCFAKFNPYLILGGTYSG  141 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~g~~dg  141 (401)
                      ..+.+++|+|++..+++++          .++.|++||+.+++......    ..|...|.+++|+|++ .++++++.|+
T Consensus       123 ~~~~~~~~s~~~~~~~~~~----------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~  191 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLL----------EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN-ELWVSQMQAN  191 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBT----------TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT-EEEEEEGGGT
T ss_pred             CCceEEEEeCCCeEEEEeC----------CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC-EEEEEECCCC
Confidence            4567999999554444444          68899999999776543211    1356789999999876 7999999999


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEE-EEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLI-SISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      .|++||+++++...      .+..|...+.+++|  ++++..++ +++.|+.|++||++... ...  .+.      ...
T Consensus       192 ~v~~~d~~~~~~~~------~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~--~~~------~~~  254 (433)
T 3bws_A          192 AVHVFDLKTLAYKA------TVDLTGKWSKILLY--DPIRDLVYCSNWISEDISVIDRKTKL-EIR--KTD------KIG  254 (433)
T ss_dssp             EEEEEETTTCCEEE------EEECSSSSEEEEEE--ETTTTEEEEEETTTTEEEEEETTTTE-EEE--ECC------CCS
T ss_pred             EEEEEECCCceEEE------EEcCCCCCeeEEEE--cCCCCEEEEEecCCCcEEEEECCCCc-EEE--Eec------CCC
Confidence            99999998766432      23578889999999  88888775 55589999999997522 111  111      234


Q ss_pred             ceEEEEeccCCCCeEEEEc--------CCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC
Q psy17342        221 AVLSLAFPQNDVNNFVVGC--------EDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW  292 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~--------~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~  292 (401)
                      .+.+++|+ ++++.+++++        .|+.|++||+...+  .+..+ .|...+.+++|+|+.     ..++++++.|+
T Consensus       255 ~~~~~~~~-~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~--~~~~~-~~~~~~~~~~~~~~g-----~~l~~~~~~~~  325 (433)
T 3bws_A          255 LPRGLLLS-KDGKELYIAQFSASNQESGGGRLGIYSMDKEK--LIDTI-GPPGNKRHIVSGNTE-----NKIYVSDMCCS  325 (433)
T ss_dssp             EEEEEEEC-TTSSEEEEEEEESCTTCSCCEEEEEEETTTTE--EEEEE-EEEECEEEEEECSST-----TEEEEEETTTT
T ss_pred             CceEEEEc-CCCCEEEEEECCCCccccCCCeEEEEECCCCc--EEeec-cCCCCcceEEECCCC-----CEEEEEecCCC
Confidence            58999999 7888888887        58999999997442  33333 466688999999983     34667778899


Q ss_pred             eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEec---------------CCEEEEEeCCCCCCCcceEEeecC
Q psy17342        293 SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEV---------------AGRVDLWNLNLDTEVPATSAIVEG  357 (401)
Q Consensus       293 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~  357 (401)
                      .|++||+.+++.+..+. +...+.+++|+|+++ ++++++.               ||.|++||+.+++....+    .+
T Consensus       326 ~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~----~~  399 (433)
T 3bws_A          326 KIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGK-YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW----EA  399 (433)
T ss_dssp             EEEEEETTTTEEEEEEE-CSSSEEEEEECTTSS-EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE----EC
T ss_pred             EEEEEECCCCcEEEEec-CCCCCCeEEEcCCCC-EEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe----cC
Confidence            99999999888887776 577899999999998 5555554               579999999887654443    33


Q ss_pred             CCCeEEEEecCCCcEEEEEec-CCcEEEEEecc
Q psy17342        358 APALSRVTWTPNGTQLCVGDE-KGAITMFDVGE  389 (401)
Q Consensus       358 ~~~v~~~~~s~~g~~l~~~~~-dg~v~iw~~~~  389 (401)
                      ...+.+++|+|+|++|++++. |+.|++|+++.
T Consensus       400 ~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          400 GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            567999999999999988875 99999999864

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-31  Score=243.27  Aligned_cols=253  Identities=12%  Similarity=0.103  Sum_probs=198.5

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCC---CCceeecc----------------------------------
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQK---KTPVHRTP----------------------------------  160 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~---~~~~~~~~----------------------------------  160 (401)
                      ..++.+++|+|++ ++|+++ .++.|++||+.+++   ........                                  
T Consensus         4 ~~p~~~v~~s~dg-~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            4 IHPLQNLLTSRDG-SLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             ECCCCEEEECSSS-SEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred             cccEEEEEecCCC-CEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            3578999999988 466665 58899999998876   22111100                                  


Q ss_pred             --------------ccccCCCCcEEEEEEeecCCceEE-EEEeCCCcEEEeecc--CCCCCccccccccccccCCccceE
Q psy17342        161 --------------LSVMAHTHPVFCMSVIGTQNAHNL-ISISNDGRLCSWSLE--MLSSPQETRDLQYNNKQTKNLAVL  223 (401)
Q Consensus       161 --------------~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~v~  223 (401)
                                    .....|.+.|.+++|  +|++.+| ++++.||.|++||+.  . +.....+..     ..+...|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~-~~~~~~~~~-----~~~~~~v~  153 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRL--TSDESRLIACADSDKSLLVFDVDKTS-KNVLKLRKR-----FCFSKRPN  153 (450)
T ss_dssp             ------------------CCCCCEEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSS-SSCEEEEEE-----EECSSCEE
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEE--cCCCCEEEEEECCCCeEEEEECcCCC-Cceeeeeec-----ccCCCCce
Confidence                          001245668999999  9999996 899999999999997  4 222222211     12567899


Q ss_pred             EEEeccCCCCeEEEEcCCceEEEEeCCCCCCC--ceeeecCCCCceeeeecCcc-CCCCCCCcEEEEEeCCCeEEEEEee
Q psy17342        224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAG--NVECYEGHEGPVVGLSSHRA-QGHIDFSHLYLTSSYDWSVKLWNIK  300 (401)
Q Consensus       224 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~--~~~~~~~~~~~v~~i~~~~~-~~~~~~~~~l~s~~~d~~i~iwd~~  300 (401)
                      +++|+ +++.+|++|+.+|.|++|++......  ....+.+|...|++++|+|+ ..    +.+|++++.|+.|++||++
T Consensus       154 ~~~~s-p~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~----~~~l~s~~~d~~i~vwd~~  228 (450)
T 2vdu_B          154 AISIA-EDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDG----HQFIITSDRDEHIKISHYP  228 (450)
T ss_dssp             EEEEC-TTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTS----CEEEEEEETTSCEEEEEES
T ss_pred             EEEEc-CCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCC----CcEEEEEcCCCcEEEEECC
Confidence            99999 89999999999999999998754322  33467789999999999997 11    4799999999999999999


Q ss_pred             CCCceEE-EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee----------------------cC
Q psy17342        301 ENKPVHS-FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV----------------------EG  357 (401)
Q Consensus       301 ~~~~~~~-~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------------------~~  357 (401)
                      +++.+.. +.+|...|.+++|+ ++. +|++++.|+.|++||+.+++.+..+....                      ..
T Consensus       229 ~~~~~~~~~~~h~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (450)
T 2vdu_B          229 QCFIVDKWLFGHKHFVSSICCG-KDY-LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDII  306 (450)
T ss_dssp             CTTCEEEECCCCSSCEEEEEEC-STT-EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CB
T ss_pred             CCceeeeeecCCCCceEEEEEC-CCC-EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccc
Confidence            9988887 55899999999999 887 89999999999999999887655443210                      22


Q ss_pred             CCCeEEEEecCCCcEEEEEe-cCCcEEEEEe
Q psy17342        358 APALSRVTWTPNGTQLCVGD-EKGAITMFDV  387 (401)
Q Consensus       358 ~~~v~~~~~s~~g~~l~~~~-~dg~v~iw~~  387 (401)
                      ...|..++|+|++++|++++ .|+.|++|++
T Consensus       307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             eEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            35689999999999999998 8999999999

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=7.9e-33  Score=246.45  Aligned_cols=257  Identities=11%  Similarity=0.043  Sum_probs=174.3

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE----ecCCCeeEEEEeC--------CCC
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF----FCQSPVLSCCFAK--------FNP  131 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~--------~~~  131 (401)
                      |...+....+++++..|++++          .|++|+|||.+++.......+    +|.+.|++++|+|        ++ 
T Consensus        88 ~~~~~~~~~~~~~~~~las~~----------~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-  156 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVC----------QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-  156 (393)
T ss_dssp             ---------CCEEEEEEEEEE----------TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-
T ss_pred             cCCCcceeecCCCCCEEEEEe----------CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-
Confidence            344455566677777888888          899999999987654433322    4789999999998        44 


Q ss_pred             ceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCc-eEEEEEeCCCcEEEeeccCCCCCcccccc
Q psy17342        132 YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNA-HNLISISNDGRLCSWSLEMLSSPQETRDL  210 (401)
Q Consensus       132 ~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~  210 (401)
                      ++|++|+.|++|+|||+.+....      ..+..|..+|.+++|  +|++ .+|++++.|++|++||++...........
T Consensus       157 ~~las~s~D~tv~~Wd~~~~~~~------~~~~~~~~~v~~v~~--~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~  228 (393)
T 4gq1_A          157 QVIASVGDDCTLIIWRLTDEGPI------LAGYPLSSPGISVQF--RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQT  228 (393)
T ss_dssp             EEEEEEETTSEEEEEEEETTEEE------EEEEECSSCEEEEEE--ETTEEEEEEEEETTSEEEEEETTCCC--------
T ss_pred             CEEEEEECCCeEEEEECCCCcee------eeecCCCCCcEEEEE--CCCCCceEEecCCCCEEEEEECCCCccccccccc
Confidence            79999999999999999776532      234678899999999  8877 48999999999999999764322111100


Q ss_pred             c-----------------cccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecC
Q psy17342        211 Q-----------------YNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSH  273 (401)
Q Consensus       211 ~-----------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  273 (401)
                      .                 .....+|...+.++.|.++++..+++++.|+.+++||+....  ....+..|...+..+.+.
T Consensus       229 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~--~~~~l~~~~~~~~~~~~~  306 (393)
T 4gq1_A          229 ELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN--DYNEISDSTMKLGPKNLL  306 (393)
T ss_dssp             --CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------CCS
T ss_pred             CCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC--CCceEeeecCccccEEEc
Confidence            0                 001245777889999987899999999999999999987433  233444444444444333


Q ss_pred             ccCCC--------------CCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEE
Q psy17342        274 RAQGH--------------IDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDL  339 (401)
Q Consensus       274 ~~~~~--------------~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~i  339 (401)
                      |+...              ...+.++++|+.|++|++||+.+++++..+..|..+|.+++|+|+|+ +||+++.+| +.+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~-~LA~as~~G-v~l  384 (393)
T 4gq1_A          307 PNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGS-HLAIATEGS-VLL  384 (393)
T ss_dssp             CSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSS-EEEEEESSE-EEE
T ss_pred             cccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCC-EEEEEeCCC-eEE
Confidence            32100              00045677888899999999999999999999999999999999998 789888655 667


Q ss_pred             EeCC
Q psy17342        340 WNLN  343 (401)
Q Consensus       340 wd~~  343 (401)
                      |.+.
T Consensus       385 vrL~  388 (393)
T 4gq1_A          385 TRLM  388 (393)
T ss_dssp             EEEG
T ss_pred             EEEe
Confidence            7664

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.1e-30  Score=232.93  Aligned_cols=266  Identities=10%  Similarity=0.073  Sum_probs=202.7

Q ss_pred             CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEE
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMS  174 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  174 (401)
                      .|+.|++||+++++....+  .+...+.+++|+|++..++++++.++.|++||+.+++....      +. +...+.+++
T Consensus        10 ~d~~v~v~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~------~~-~~~~v~~~~   80 (391)
T 1l0q_A           10 ESDNISVIDVTSNKVTATI--PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT------VP-AGSSPQGVA   80 (391)
T ss_dssp             TTTEEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE------EE-CSSSEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEe--ecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE------EE-CCCCccceE
Confidence            7999999999977655433  34567999999998865668888999999999988764322      22 333899999


Q ss_pred             EeecCCceEEE-EEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeE-EEEcCCceEEEEeCCCC
Q psy17342        175 VIGTQNAHNLI-SISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNF-VVGCEDGNVYSACRHGN  252 (401)
Q Consensus       175 ~~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d~~i~~~~~~~~  252 (401)
                      |  +|++.+++ +++.++.|++||+.... ...  .+.      +...+.+++|+ ++++.+ ++++.++.|++||+...
T Consensus        81 ~--spdg~~l~~~~~~~~~v~v~d~~~~~-~~~--~~~------~~~~~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~~  148 (391)
T 1l0q_A           81 V--SPDGKQVYVTNMASSTLSVIDTTSNT-VAG--TVK------TGKSPLGLALS-PDGKKLYVTNNGDKTVSVINTVTK  148 (391)
T ss_dssp             E--CTTSSEEEEEETTTTEEEEEETTTTE-EEE--EEE------CSSSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTT
T ss_pred             E--CCCCCEEEEEECCCCEEEEEECCCCe-EEE--EEe------CCCCcceEEEC-CCCCEEEEEeCCCCEEEEEECCCC
Confidence            9  89998775 45567999999997522 111  111      33468999999 788766 78888999999998743


Q ss_pred             CCCceeeecCCCCceeeeecCccCCCCCCCcEE-EEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEE
Q psy17342        253 KAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLY-LTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATV  331 (401)
Q Consensus       253 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~  331 (401)
                        +.+..+..+ ..+.+++|+|+      ++.+ ++++.++.|++||+++++.+..+.. ...+.+++|+|+++ +++++
T Consensus       149 --~~~~~~~~~-~~~~~~~~~~d------g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~-~l~~~  217 (391)
T 1l0q_A          149 --AVINTVSVG-RSPKGIAVTPD------GTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGT-KAYVT  217 (391)
T ss_dssp             --EEEEEEECC-SSEEEEEECTT------SSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSS-EEEEE
T ss_pred             --cEEEEEecC-CCcceEEECCC------CCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCC-EEEEE
Confidence              345566655 45689999998      5555 6778899999999999887777764 66889999999998 45555


Q ss_pred             e---cCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEE-EEEecCCcEEEEEeccCccceeeee
Q psy17342        332 E---VAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQL-CVGDEKGAITMFDVGEVGIACLKFI  398 (401)
Q Consensus       332 ~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~v~iw~~~~~~~~~l~~~  398 (401)
                      +   .++.|++||+.+++.+..+    .....+.+++|+|+|++| ++++.|+.|++||+.++  +.++.+
T Consensus       218 ~~~~~~~~v~~~d~~~~~~~~~~----~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~--~~~~~~  282 (391)
T 1l0q_A          218 NVDKYFNTVSMIDTGTNKITARI----PVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN--TITATM  282 (391)
T ss_dssp             EECSSCCEEEEEETTTTEEEEEE----ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEE
T ss_pred             ecCcCCCcEEEEECCCCeEEEEE----ecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCC--cEEEEE
Confidence            5   6899999999987644333    234568899999999877 66788999999999987  444444

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-31  Score=234.64  Aligned_cols=267  Identities=10%  Similarity=-0.003  Sum_probs=197.2

Q ss_pred             hhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEe
Q psy17342          6 AGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASY   85 (401)
Q Consensus         6 ~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   85 (401)
                      -+..+++|+.||.|++||....+.+..+                     .         ...|.++.|+|+   +++++ 
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~---------------------~---------~~~v~~~~~~~~---~~s~s-   92 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTI---------------------T---------TPNPRTGGEHPA---IISRG-   92 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEE---------------------E---------EECCCTTCCCCS---EEEEC-
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEE---------------------e---------cCCceeeeeCCc---eEEec-
Confidence            3567999999999999998766522111                     0         155778889888   88887 


Q ss_pred             ccCCCCCCCCCcEEEEEeCc---------CCCCCceEEEecCCCeeEEEEeC--CCCceEEEEecCCeEEEEECCCCCCC
Q psy17342         86 HRNKEAPNEPDGVCLIWNTK---------FKKTTPEFEFFCQSPVLSCCFAK--FNPYLILGGTYSGQIVLWDTRVQKKT  154 (401)
Q Consensus        86 ~~~~~~~~~~d~~v~iwd~~---------~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~g~~dg~v~iw~~~~~~~~  154 (401)
                               .|++|++|+..         +++.+......|..+|.+++|+|  ++ .++++|+.||.|++||+++++..
T Consensus        93 ---------~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~  162 (343)
T 3lrv_A           93 ---------PCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQY  162 (343)
T ss_dssp             ---------STTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEE
T ss_pred             ---------CCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEE
Confidence                     79999999765         33334344445668899999999  77 78999999999999999987653


Q ss_pred             ceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccC-CccceEEEEeccCCCC
Q psy17342        155 PVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT-KNLAVLSLAFPQNDVN  233 (401)
Q Consensus       155 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~  233 (401)
                      ..     ....|...|.+++|  +|++.+|++|+.||.|++||++........       +.. |...|++++|+ +++.
T Consensus       163 ~~-----~~~~~~~~i~~~~~--~pdg~~lasg~~dg~i~iwd~~~~~~~~~~-------~~~~h~~~v~~l~fs-~~g~  227 (343)
T 3lrv_A          163 IV-----HSAKSDVEYSSGVL--HKDSLLLALYSPDGILDVYNLSSPDQASSR-------FPVDEEAKIKEVKFA-DNGY  227 (343)
T ss_dssp             EE-----ECCCSSCCCCEEEE--CTTSCEEEEECTTSCEEEEESSCTTSCCEE-------CCCCTTSCEEEEEEC-TTSS
T ss_pred             EE-----EecCCCCceEEEEE--CCCCCEEEEEcCCCEEEEEECCCCCCCccE-------EeccCCCCEEEEEEe-CCCC
Confidence            21     11356668999999  999999999999999999999864322122       223 78899999999 8999


Q ss_pred             eEEEEcCCceEEEEeCCCCCCC-ceeeecCCCCcee--eeecCccCCCCCCCcEEEEEeC-CCeEEEEEeeCCCceEEEe
Q psy17342        234 NFVVGCEDGNVYSACRHGNKAG-NVECYEGHEGPVV--GLSSHRAQGHIDFSHLYLTSSY-DWSVKLWNIKENKPVHSFN  309 (401)
Q Consensus       234 ~l~~~~~d~~i~~~~~~~~~~~-~~~~~~~~~~~v~--~i~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~  309 (401)
                      +|++++. +.|++||++..... .+..+..|..++.  +++|+|+      +++|++++. |+.|++|++.+....... 
T Consensus       228 ~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~l~~~s~~d~~i~v~~~~~~~~~~~~-  299 (343)
T 3lrv_A          228 WMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS------GKNMIAYSNESNSLTIYKFDKKTKNWTK-  299 (343)
T ss_dssp             EEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT------SSEEEEEETTTTEEEEEEECTTTCSEEE-
T ss_pred             EEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCC------CCEEEEecCCCCcEEEEEEcccccceEe-
Confidence            9999994 59999999854321 1222333555555  5999998      799999998 999999999776554443 


Q ss_pred             ecCCceEEEEECC---CCCcEEEEEecCCEEEEEeCC
Q psy17342        310 EFRDYVMDVQWSP---INPALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       310 ~~~~~v~~v~~~~---~~~~~l~~~~~d~~i~iwd~~  343 (401)
                         .++..++|.|   +.. .+++++.|+.+.++-..
T Consensus       300 ---~~~~~~~~~~~~~~~~-~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          300 ---DEESALCLQSDTADFT-DMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             ---EEEEECCC----CCCC-EEEEEEETTEEEEEEEC
T ss_pred             ---cCceeEecCccccccc-eeEEEecCCceEEEEec
Confidence               5678899998   776 68888889999887543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.98  E-value=2.6e-30  Score=217.24  Aligned_cols=284  Identities=13%  Similarity=0.122  Sum_probs=184.7

Q ss_pred             ceEEEEecCCCC---CeEEEEeccCCCCCCCCCcEEEEEeCcCC---CCCceEEEecCCCeeEEEEeCCCCceEEEEecC
Q psy17342         67 NVTYMDWSTQHP---ELLLASYHRNKEAPNEPDGVCLIWNTKFK---KTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS  140 (401)
Q Consensus        67 ~v~~~~~~~~~~---~l~~~~~~~~~~~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d  140 (401)
                      .+.++-|-..+-   .+++++           ...|++|+..++   +.+....+ |..+|..+.+.|+..+++..+-.+
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~-----------~~~v~lw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~  108 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITAC-----------EDVVSLWKALDAWQWEKLYTWHF-AEVPVLQIVPVPDVYNLVCVALGN  108 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEE-----------SSEEEEEEESSSSBEEEEEEEEC-CSSCEEEECCCTTCCSCEEEEECS
T ss_pred             EEeeeeeccCCCCccEEEEec-----------cceEEEcccCCCccceeeEEEec-cCceeEEEEEcCcccceeeeeecc
Confidence            366676755543   577777           899999999876   33333322 467899999999887777665422


Q ss_pred             CeE-EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEe--CCCcEEEeeccCCCCCccccccccccccC
Q psy17342        141 GQI-VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS--NDGRLCSWSLEMLSSPQETRDLQYNNKQT  217 (401)
Q Consensus       141 g~v-~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  217 (401)
                      =.+ .++.+.-..........+-..+|...|.++     ++++++.+++  .|+.|++|++...++....       ...
T Consensus       109 ~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l-----~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s-------~~~  176 (356)
T 2w18_A          109 LEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL-----TKRRLVSSSGTLSDQQVEVMTFAEDGGGKEN-------QFL  176 (356)
T ss_dssp             SSEEEEEEECC------CCEEEEEEEEEEEEEEE-----TTTEEEEEESSSTTCEEEEEEECTTSCEEEE-------EEE
T ss_pred             ccccceEEEEECCCccccccEEEeCCCeEEEEec-----CCCcEEEecccCCCCcEEEEEECCCCceeee-------ecc
Confidence            111 122221111100000001113344344332     4566666644  5999999999642322222       223


Q ss_pred             CccceEEEEecc--CCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCC---ceeeeecCccCCCCCCCcEE-------
Q psy17342        218 KNLAVLSLAFPQ--NDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEG---PVVGLSSHRAQGHIDFSHLY-------  285 (401)
Q Consensus       218 ~~~~v~~~~~~~--~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~~~~~~l-------  285 (401)
                      |...++.++|+|  .++..|++|+.|+.|++||+..  .+++.++.+|..   .+.+++|+|+      +.++       
T Consensus       177 ~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T--Gk~l~tL~g~~~~v~~v~~vafSpd------G~~lvs~s~~~  248 (356)
T 2w18_A          177 MPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT--GQLLKKMHIDDSYQASVCHKAYSEM------GLLFIVLSHPC  248 (356)
T ss_dssp             CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT--CCEEEEEECCC---CCCEEEEEEET------TEEEEEEC---
T ss_pred             CCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC--CcEEEEEcCCCcceeeeEEEEECCC------CCEEEEeccCC
Confidence            666777777773  3779999999999999999984  457888876544   5666789997      5665       


Q ss_pred             -----EEEeCCCeEEEEEeeCCCceEEEe-----ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee
Q psy17342        286 -----LTSSYDWSVKLWNIKENKPVHSFN-----EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV  355 (401)
Q Consensus       286 -----~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  355 (401)
                           ++|+.|++|++||..+++.+..+.     +|...+.+..++  +. ++++++.|++|+|||+.+++.+..+.   
T Consensus       249 ~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tGk~l~tL~---  322 (356)
T 2w18_A          249 AKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLGQCTALLP---  322 (356)
T ss_dssp             ---------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTCSEEEEEC---
T ss_pred             CcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCCcEEEEec---
Confidence                 678889999999999998877652     555555555544  54 79999999999999999988665542   


Q ss_pred             cCCCCe-EEEEecCCCcEEEEEecCCcEEEEEec
Q psy17342        356 EGAPAL-SRVTWTPNGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       356 ~~~~~v-~~~~~s~~g~~l~~~~~dg~v~iw~~~  388 (401)
                      +|...+ ..++|+|||++|++|+.|++|+|||+.
T Consensus       323 gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          323 PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             CC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred             CCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence            455544 468999999999999999999999963

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=3.7e-29  Score=226.15  Aligned_cols=300  Identities=10%  Similarity=0.040  Sum_probs=221.8

Q ss_pred             ccceEEEE---ecCCCCCeEEEEeccCC----CCCCCCCcEEEEEeCc--CCCCCceEEEecCCCeeEEEEeCCCCceEE
Q psy17342         65 NRNVTYMD---WSTQHPELLLASYHRNK----EAPNEPDGVCLIWNTK--FKKTTPEFEFFCQSPVLSCCFAKFNPYLIL  135 (401)
Q Consensus        65 ~~~v~~~~---~~~~~~~l~~~~~~~~~----~~~~~~d~~v~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  135 (401)
                      ...+..++   |+|++..++..+.....    +..+..++.+.||.++  ++.......+.....+.+++|+| +..+++
T Consensus        60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~  138 (433)
T 3bws_A           60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFID-NTRLAI  138 (433)
T ss_dssp             TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESS-SSEEEE
T ss_pred             CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeC-CCeEEE
Confidence            36688888   99998877766522110    0122344433455443  33323333344456678999999 558888


Q ss_pred             EEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccc
Q psy17342        136 GGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNK  215 (401)
Q Consensus       136 ~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  215 (401)
                      +++.++.|++||+.+++...... ...+.+|...|.+++|  ++++..+++++.|+.|++||++... ..  ..+     
T Consensus       139 ~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~v~~~~~--~~~~~~~~s~~~d~~v~~~d~~~~~-~~--~~~-----  207 (433)
T 3bws_A          139 PLLEDEGMDVLDINSGQTVRLSP-PEKYKKKLGFVETISI--PEHNELWVSQMQANAVHVFDLKTLA-YK--ATV-----  207 (433)
T ss_dssp             EBTTSSSEEEEETTTCCEEEECC-CHHHHTTCCEEEEEEE--GGGTEEEEEEGGGTEEEEEETTTCC-EE--EEE-----
T ss_pred             EeCCCCeEEEEECCCCeEeeecC-cccccccCCceeEEEE--cCCCEEEEEECCCCEEEEEECCCce-EE--EEE-----
Confidence            88889999999998876542211 1134689999999999  8999999999999999999997522 11  121     


Q ss_pred             cCCccceEEEEeccCCCCeE-EEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe-----
Q psy17342        216 QTKNLAVLSLAFPQNDVNNF-VVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS-----  289 (401)
Q Consensus       216 ~~~~~~v~~~~~~~~~~~~l-~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~-----  289 (401)
                      ..+...+.+++|+ ++++.+ ++++.++.|++||++..  +.+..+.. ...+.+++|+|+      ++++++++     
T Consensus       208 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~~~--~~~~~~~~-~~~~~~~~~~~~------g~~l~~~~~~~~~  277 (433)
T 3bws_A          208 DLTGKWSKILLYD-PIRDLVYCSNWISEDISVIDRKTK--LEIRKTDK-IGLPRGLLLSKD------GKELYIAQFSASN  277 (433)
T ss_dssp             ECSSSSEEEEEEE-TTTTEEEEEETTTTEEEEEETTTT--EEEEECCC-CSEEEEEEECTT------SSEEEEEEEESCT
T ss_pred             cCCCCCeeEEEEc-CCCCEEEEEecCCCcEEEEECCCC--cEEEEecC-CCCceEEEEcCC------CCEEEEEECCCCc
Confidence            2367789999999 677766 55668999999999743  34555554 456899999998      67888877     


Q ss_pred             ---CCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEe
Q psy17342        290 ---YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTW  366 (401)
Q Consensus       290 ---~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  366 (401)
                         .|+.|++||+++++.+..+. |...+.+++|+|+++.++++++.|+.|++||+.+++....    ..+...+.+++|
T Consensus       278 ~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~----~~~~~~~~~~~~  352 (433)
T 3bws_A          278 QESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS----IPVFDKPNTIAL  352 (433)
T ss_dssp             TCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE----EECSSSEEEEEE
T ss_pred             cccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE----ecCCCCCCeEEE
Confidence               58899999999887776653 4568899999999987788889999999999997654433    245677999999


Q ss_pred             cCCCcEEEEEec---------------CCcEEEEEeccCc
Q psy17342        367 TPNGTQLCVGDE---------------KGAITMFDVGEVG  391 (401)
Q Consensus       367 s~~g~~l~~~~~---------------dg~v~iw~~~~~~  391 (401)
                      +|+|++|++++.               ||.|++||+.+++
T Consensus       353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~  392 (433)
T 3bws_A          353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT  392 (433)
T ss_dssp             CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred             cCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence            999999988876               5799999998874

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=3.9e-30  Score=225.90  Aligned_cols=250  Identities=8%  Similarity=0.035  Sum_probs=173.3

Q ss_pred             EEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC
Q psy17342        101 IWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN  180 (401)
Q Consensus       101 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  180 (401)
                      ||++.+.+.+... ..|...|++++|+|++ .+|++|+.++ +++|+........        ..+...+..+++  .++
T Consensus         3 i~s~~~~~~~~~~-~~h~~~V~~v~fs~dg-~~la~g~~~~-~~iw~~~~~~~~~--------~~~~~~~~~~~~--~~~   69 (355)
T 3vu4_A            3 LGSMITRNPIVPE-NHVSNPVTDYEFNQDQ-SCLILSTLKS-FEIYNVHPVAHIM--------SQEMRHLSKVRM--LHR   69 (355)
T ss_dssp             -----------------CCCCCEEEECTTS-SEEEEECSSE-EEEEEETTEEEEE--------EEECSCCCEEEE--CTT
T ss_pred             cccccccCCcccc-ccCCCceEEEEECCCC-CEEEEEcCCE-EEEEecCCcceee--------eeecCCeEEEEE--cCC
Confidence            4455544333222 3468999999999988 7888887664 7899987654321        112224667777  566


Q ss_pred             ceEE-EEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceee
Q psy17342        181 AHNL-ISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVEC  259 (401)
Q Consensus       181 ~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~  259 (401)
                      ++.+ ++++.|++|++||+.+.. ...  .+.      +...|.+++++ ++  .++++ .++.|++||+.... +.+..
T Consensus        70 ~~~~~~~~~~d~~v~iWd~~~~~-~~~--~~~------~~~~v~~v~~~-~~--~~~~~-~~~~i~i~d~~~~~-~~~~~  135 (355)
T 3vu4_A           70 TNYVAFVTGVKEVVHIWDDVKKQ-DVS--RIK------VDAPVKDLFLS-RE--FIVVS-YGDVISVFKFGNPW-KRITD  135 (355)
T ss_dssp             SSEEEEECSSTTEEEEEETTTTE-EEE--EEE------CSSCEEEEEEC-SS--EEEEE-ETTEEEEEESSTTC-CBSSC
T ss_pred             CCEEEEEECCccEEEEEECCCCc-EEE--EEE------CCCceEEEEEc-CC--EEEEE-EcCEEEEEECCCCc-eeeEE
Confidence            6665 567888999999987522 221  111      44589999998 43  34444 47899999998541 23444


Q ss_pred             ecCCCCceeeeecCccCCCCCCCcEEEE--EeCCCeEEEEEeeCCC---------------c-eEEEeecCCceEEEEEC
Q psy17342        260 YEGHEGPVVGLSSHRAQGHIDFSHLYLT--SSYDWSVKLWNIKENK---------------P-VHSFNEFRDYVMDVQWS  321 (401)
Q Consensus       260 ~~~~~~~v~~i~~~~~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~---------------~-~~~~~~~~~~v~~v~~~  321 (401)
                      +..   +...++++|        .+++.  |+.||.|++||+++++               + +..+.+|...|.+++|+
T Consensus       136 ~~~---~~~~~~~s~--------~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s  204 (355)
T 3vu4_A          136 DIR---FGGVCEFSN--------GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN  204 (355)
T ss_dssp             CEE---EEEEEEEET--------TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC
T ss_pred             ecc---CCceEEEEc--------cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC
Confidence            443   334445554        24444  6789999999998765               2 78899999999999999


Q ss_pred             CCCCcEEEEEecCCE-EEEEeCCCCCCCcceEEeec-CCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        322 PINPALFATVEVAGR-VDLWNLNLDTEVPATSAIVE-GAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       322 ~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      |++. +|++++.|++ |++||+++++.+..+.  .+ |...|++++|+|+|++|++++.|+.|++||+.++.
T Consensus       205 ~~g~-~l~s~s~d~~~v~iwd~~~~~~~~~~~--~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          205 RKSD-MVATCSQDGTIIRVFKTEDGVLVREFR--RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             TTSS-EEEEEETTCSEEEEEETTTCCEEEEEE--CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             CCCC-EEEEEeCCCCEEEEEECCCCcEEEEEE--cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            9997 8999999998 9999999887654442  23 78899999999999999999999999999998764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=4.7e-29  Score=229.99  Aligned_cols=330  Identities=12%  Similarity=0.087  Sum_probs=232.5

Q ss_pred             hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH   86 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   86 (401)
                      +..+++++.|+.|++||....+.+.                        .+..   .  ..+..++|+|+|++|++++  
T Consensus       149 ~~~~vs~~~d~~V~v~D~~t~~~~~------------------------~i~~---g--~~~~~v~~spdg~~l~v~~--  197 (543)
T 1nir_A          149 NLFSVTLRDAGQIALVDGDSKKIVK------------------------VIDT---G--YAVHISRMSASGRYLLVIG--  197 (543)
T ss_dssp             GEEEEEEGGGTEEEEEETTTCCEEE------------------------EEEC---S--TTEEEEEECTTSCEEEEEE--
T ss_pred             CEEEEEEcCCCeEEEEECCCceEEE------------------------EEec---C--cccceEEECCCCCEEEEEC--
Confidence            4567778888899998876544111                        1110   1  2288999999999999999  


Q ss_pred             cCCCCCCCCCcEEEEEeC--cCCCCCceEEEecCCCeeEEEEeC----CCCceEEEEe-cCCeEEEEECCCCCCCceeec
Q psy17342         87 RNKEAPNEPDGVCLIWNT--KFKKTTPEFEFFCQSPVLSCCFAK----FNPYLILGGT-YSGQIVLWDTRVQKKTPVHRT  159 (401)
Q Consensus        87 ~~~~~~~~~d~~v~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~g~-~dg~v~iw~~~~~~~~~~~~~  159 (401)
                              .++.|.+||+  .+++.+.++  .+...+..++|+|    ++. ++++++ .+++|.+||..+.+.......
T Consensus       198 --------~d~~V~v~D~~~~t~~~~~~i--~~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~~t~~~~~~i~~  266 (543)
T 1nir_A          198 --------RDARIDMIDLWAKEPTKVAEI--KIGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGETLEPKQIVST  266 (543)
T ss_dssp             --------TTSEEEEEETTSSSCEEEEEE--ECCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETTTCCEEEEEEC
T ss_pred             --------CCCeEEEEECcCCCCcEEEEE--ecCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEeccccccceeecc
Confidence                    6899999999  666554433  3456789999999    884 555555 589999999987765433221


Q ss_pred             c-cccc---CCC-CcEEEEEEeecCCc-eEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCC
Q psy17342        160 P-LSVM---AHT-HPVFCMSVIGTQNA-HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVN  233 (401)
Q Consensus       160 ~-~~~~---~~~-~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  233 (401)
                      . ....   .|. ..+.++.+  ++++ ..+++...++.|.+||+....... ...+      .+...+..++|+ |+++
T Consensus       267 ~g~~~~~~~~~~~~~v~~i~~--s~~~~~~~vs~~~~g~i~vvd~~~~~~l~-~~~i------~~~~~~~~~~~s-pdg~  336 (543)
T 1nir_A          267 RGMTVDTQTYHPEPRVAAIIA--SHEHPEFIVNVKETGKVLLVNYKDIDNLT-VTSI------GAAPFLHDGGWD-SSHR  336 (543)
T ss_dssp             CEECSSSCCEESCCCEEEEEE--CSSSSEEEEEETTTTEEEEEECTTSSSCE-EEEE------ECCSSCCCEEEC-TTSC
T ss_pred             cCcccCccccccCCceEEEEE--CCCCCEEEEEECCCCeEEEEEecCCCcce-eEEe------ccCcCccCceEC-CCCC
Confidence            0 0000   133 37888988  7755 456677889999999997633221 1111      134457789999 7888


Q ss_pred             eEEEE-cCCceEEEEeCCCCCCCceeeecC----CCCceeeeecCccCCCCCCCcEEEEEe-CCCeEEEEEeeC------
Q psy17342        234 NFVVG-CEDGNVYSACRHGNKAGNVECYEG----HEGPVVGLSSHRAQGHIDFSHLYLTSS-YDWSVKLWNIKE------  301 (401)
Q Consensus       234 ~l~~~-~~d~~i~~~~~~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~------  301 (401)
                      +++++ ..++.|.+||....  +++..+..    |.+....+ ++|+.     +.+++++. .|++|.+||+.+      
T Consensus       337 ~l~va~~~~~~v~v~D~~tg--~l~~~i~~g~~ph~g~g~~~-~~p~~-----g~~~~s~~~~d~~V~v~d~~~~~~~~~  408 (543)
T 1nir_A          337 YFMTAANNSNKVAVIDSKDR--RLSALVDVGKTPHPGRGANF-VHPKY-----GPVWSTSHLGDGSISLIGTDPKNHPQY  408 (543)
T ss_dssp             EEEEEEGGGTEEEEEETTTT--EEEEEEECSSSBCCTTCEEE-EETTT-----EEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred             EEEEEecCCCeEEEEECCCC--eEEEeeccCCCCCCCCCccc-CCCCC-----ccEEEeccCCCceEEEEEeCCCCCchh
Confidence            76654 56889999999854  35555553    54433333 35653     57777776 589999999988      


Q ss_pred             -CCceEEEeecCCceEEEEECCCCCcEEEEEe-------cCCEEEEEeCCCCCCCcce-EE-----eecCCCCeEEEEec
Q psy17342        302 -NKPVHSFNEFRDYVMDVQWSPINPALFATVE-------VAGRVDLWNLNLDTEVPAT-SA-----IVEGAPALSRVTWT  367 (401)
Q Consensus       302 -~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~-~~-----~~~~~~~v~~~~~s  367 (401)
                       .+.++++..|...+..++++|+++ .|++++       .+++|.+||+.+.+..... ..     ...+...+..+.|+
T Consensus       409 ~~~~v~~l~~~g~~~~~v~~~pdg~-~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  487 (543)
T 1nir_A          409 AWKKVAELQGQGGGSLFIKTHPKSS-HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYN  487 (543)
T ss_dssp             BTSEEEEEECSCSCCCCEECCTTCC-EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEEC
T ss_pred             cCeEEEEEEcCCCCceEEEcCCCCC-cEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCC
Confidence             889999999988889999999998 667765       3779999999988765221 10     01345779999999


Q ss_pred             CCCcEEEEEe-----cCCcEEEEEeccCccceeeeee
Q psy17342        368 PNGTQLCVGD-----EKGAITMFDVGEVGIACLKFIT  399 (401)
Q Consensus       368 ~~g~~l~~~~-----~dg~v~iw~~~~~~~~~l~~~~  399 (401)
                      |+|+.|+++.     .++.|.|||.+++  +++++++
T Consensus       488 ~~g~~~~~s~~~~~~~~~~i~v~D~~t~--~~~~~i~  522 (543)
T 1nir_A          488 KRGDEVWFSVWNGKNDSSALVVVDDKTL--KLKAVVK  522 (543)
T ss_dssp             SSSSEEEEEEECCTTSCCEEEEEETTTT--EEEEEEC
T ss_pred             CCCCEEEEEeecCCCCCCeEEEEECCCc--eEEEeec
Confidence            9999998763     4799999999998  5566654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2.3e-28  Score=205.47  Aligned_cols=190  Identities=9%  Similarity=0.081  Sum_probs=134.6

Q ss_pred             CCceEEEEe--cCCeEEEEECCC-CCCCceeeccccccCCCCcEEEEEEee-cCCceEEEEEeCCCcEEEeeccCCCCCc
Q psy17342        130 NPYLILGGT--YSGQIVLWDTRV-QKKTPVHRTPLSVMAHTHPVFCMSVIG-TQNAHNLISISNDGRLCSWSLEMLSSPQ  205 (401)
Q Consensus       130 ~~~~l~~g~--~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~dg~i~~wd~~~~~~~~  205 (401)
                      +.+++.++.  .|+.|++|++.. ++..      .....|...+..++|.+ .-++..|++++.|++|++||+.++. ..
T Consensus       144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~------~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk-~l  216 (356)
T 2w18_A          144 KRRLVSSSGTLSDQQVEVMTFAEDGGGK------ENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ-LL  216 (356)
T ss_dssp             TTEEEEEESSSTTCEEEEEEECTTSCEE------EEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC-EE
T ss_pred             CCcEEEecccCCCCcEEEEEECCCCcee------eeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc-EE
Confidence            335666643  589999999954 4322      22357888899999933 2278999999999999999998632 22


Q ss_pred             cccccccccccCCccceEEEEeccCCCCeE------------EEEcCCceEEEEeCCCCCCCceeee-----cCCCCcee
Q psy17342        206 ETRDLQYNNKQTKNLAVLSLAFPQNDVNNF------------VVGCEDGNVYSACRHGNKAGNVECY-----EGHEGPVV  268 (401)
Q Consensus       206 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l------------~~~~~d~~i~~~~~~~~~~~~~~~~-----~~~~~~v~  268 (401)
                      ..+...    ..+...+.+++|+ |++.++            ++|+.|+.|++||.....  .+..+     .+|...+.
T Consensus       217 ~tL~g~----~~~v~~v~~vafS-pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk--~l~v~~~~~p~Gh~~~~l  289 (356)
T 2w18_A          217 KKMHID----DSYQASVCHKAYS-EMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL--SVGVMLYCLPPGQAGRFL  289 (356)
T ss_dssp             EEEECC----C---CCCEEEEEE-ETTEEEEEEC------------CCEEEEEEETTTTE--EEEEEEECCCTTCCCCEE
T ss_pred             EEEcCC----CcceeeeEEEEEC-CCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE--EEEEEEeeccCCCcceeE
Confidence            222111    1123467788899 677765            568889999999987442  33333     36665544


Q ss_pred             eeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceE-EEEECCCCCcEEEEEecCCEEEEEeC
Q psy17342        269 GLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVM-DVQWSPINPALFATVEVAGRVDLWNL  342 (401)
Q Consensus       269 ~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-~v~~~~~~~~~l~~~~~d~~i~iwd~  342 (401)
                      +..++        +.++++++.|++|+|||+.+++++.++.+|...+. .++|+|+|+ +|++|+.|++|+|||+
T Consensus       290 sg~~s--------g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~-~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          290 EGDVK--------DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDS-HLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEEE--------TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSS-EEEEECTTSCEEEEEE
T ss_pred             ccccC--------CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCC-EEEEEECCCcEEEecC
Confidence            33333        46899999999999999999999999998877655 589999997 8999999999999996

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=2.3e-26  Score=205.96  Aligned_cols=250  Identities=9%  Similarity=0.037  Sum_probs=184.2

Q ss_pred             CCCeEEEEeccCCCCCCCCC---cEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC---eEEEEECCC
Q psy17342         77 HPELLLASYHRNKEAPNEPD---GVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG---QIVLWDTRV  150 (401)
Q Consensus        77 ~~~l~~~~~~~~~~~~~~~d---~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg---~v~iw~~~~  150 (401)
                      +..++.++...       .+   +.|++||++. ... .....|...+.+++|+|++ +.|++++.++   .|++||+.+
T Consensus       143 ~~~l~~~s~~~-------~~~~~~~i~i~d~~g-~~~-~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~t  212 (415)
T 2hqs_A          143 RTRIAYVVQTN-------GGQFPYELRVSDYDG-YNQ-FVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLAN  212 (415)
T ss_dssp             TCEEEEEEECS-------SSSCCEEEEEEETTS-CSC-EEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTT
T ss_pred             CCEEEEEEecC-------CCCccceEEEEcCCC-CCC-EEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCC
Confidence            56777777310       12   8999999984 333 3445578899999999988 5777777664   999999988


Q ss_pred             CCCCceeeccccccCCCCcEEEEEEeecCCceEEE-EEeCCCc--EEEeeccCCCCCccccccccccccCCccceEEEEe
Q psy17342        151 QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLI-SISNDGR--LCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF  227 (401)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  227 (401)
                      ++..       .+..|...+.+++|  +|++..|+ +++.++.  |.+||+.... .   ..     +..+...+.+++|
T Consensus       213 g~~~-------~l~~~~~~~~~~~~--spdg~~la~~~~~~g~~~i~~~d~~~~~-~---~~-----l~~~~~~~~~~~~  274 (415)
T 2hqs_A          213 GAVR-------QVASFPRHNGAPAF--SPDGSKLAFALSKTGSLNLYVMDLASGQ-I---RQ-----VTDGRSNNTEPTW  274 (415)
T ss_dssp             CCEE-------EEECCSSCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTTCC-E---EE-----CCCCSSCEEEEEE
T ss_pred             CcEE-------EeecCCCcccCEEE--cCCCCEEEEEEecCCCceEEEEECCCCC-E---Ee-----CcCCCCcccceEE
Confidence            7642       23567789999999  99999887 6666665  8889987521 1   12     2336678999999


Q ss_pred             ccCCCCeEEEEcC-Cc--eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC---CeEEEEEeeC
Q psy17342        228 PQNDVNNFVVGCE-DG--NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD---WSVKLWNIKE  301 (401)
Q Consensus       228 ~~~~~~~l~~~~~-d~--~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~  301 (401)
                      + |+++.|++++. ++  .|++||+.+..   ...+..+...+.+++|+|+      +++|++++.+   ..|++||+.+
T Consensus       275 s-pdg~~l~~~s~~~g~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~spd------G~~l~~~~~~~g~~~i~~~d~~~  344 (415)
T 2hqs_A          275 F-PDSQNLAFTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQDADVSSD------GKFMVMVSSNGGQQHIAKQDLAT  344 (415)
T ss_dssp             C-TTSSEEEEEECTTSSCEEEEEETTSSC---CEECCCSSSEEEEEEECTT------SSEEEEEEECSSCEEEEEEETTT
T ss_pred             C-CCCCEEEEEECCCCCcEEEEEECCCCC---EEEEecCCCcccCeEECCC------CCEEEEEECcCCceEEEEEECCC
Confidence            9 89998888776 44  67888887543   3445557778999999999      7888887764   5899999988


Q ss_pred             CCceEEEeecCCceEEEEECCCCCcEEEEEecCC---EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc
Q psy17342        302 NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAG---RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT  371 (401)
Q Consensus       302 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  371 (401)
                      ++. ..+..+. .+.+++|+|+|+ +|++++.++   .|++||+..+. ...   ...+...|.+++|+|.-+
T Consensus       345 ~~~-~~l~~~~-~~~~~~~spdg~-~l~~~s~~~~~~~l~~~d~~g~~-~~~---l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          345 GGV-QVLSSTF-LDETPSLAPNGT-MVIYSSSQGMGSVLNLVSTDGRF-KAR---LPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             CCE-EECCCSS-SCEEEEECTTSS-EEEEEEEETTEEEEEEEETTSCC-EEE---CCCSSSEEEEEEECCCCC
T ss_pred             CCE-EEecCCC-CcCCeEEcCCCC-EEEEEEcCCCccEEEEEECCCCc-EEE---eeCCCCCCcCCccccccc
Confidence            766 4455554 899999999998 566666665   89999987543 222   235678899999999754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=5.2e-27  Score=210.12  Aligned_cols=285  Identities=12%  Similarity=0.043  Sum_probs=206.9

Q ss_pred             cceEEEEecCCCCCeE-EEEeccCCCCCCCCCc----EEEEEeC--cCCCCCceE-EEecCCCeeEEEEeCC--------
Q psy17342         66 RNVTYMDWSTQHPELL-LASYHRNKEAPNEPDG----VCLIWNT--KFKKTTPEF-EFFCQSPVLSCCFAKF--------  129 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~-~~~~~~~~~~~~~~d~----~v~iwd~--~~~~~~~~~-~~~~~~~v~~~~~~~~--------  129 (401)
                      ..+...+|.+.|..++ +++...      ..+|    .|+|||+  .+++.+... ...|...+..+++++.        
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~------~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  136 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTP------NPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLT  136 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEE------CTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHH
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEE------CCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHc
Confidence            4678888999987666 555210      1456    9999999  877655332 2335566777766641        


Q ss_pred             ------CCceEEEEecC------CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC---cEE
Q psy17342        130 ------NPYLILGGTYS------GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG---RLC  194 (401)
Q Consensus       130 ------~~~~l~~g~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~  194 (401)
                            + ..++.++.+      +.|++||++....       ..+..|...+.+++|  +|+++.|++++.++   .|+
T Consensus       137 g~~~~~~-~~l~~~s~~~~~~~~~~i~i~d~~g~~~-------~~l~~~~~~v~~~~~--Spdg~~la~~s~~~~~~~i~  206 (415)
T 2hqs_A          137 GIKGAFR-TRIAYVVQTNGGQFPYELRVSDYDGYNQ-------FVVHRSPQPLMSPAW--SPDGSKLAYVTFESGRSALV  206 (415)
T ss_dssp             SSCCCTT-CEEEEEEECSSSSCCEEEEEEETTSCSC-------EEEEEESSCEEEEEE--CTTSSEEEEEECTTSSCEEE
T ss_pred             CCCCcCC-CEEEEEEecCCCCccceEEEEcCCCCCC-------EEEeCCCCcceeeEE--cCCCCEEEEEEecCCCcEEE
Confidence                  3 344444443      7999999975432       224578899999999  99999999999885   899


Q ss_pred             EeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEE-EEcCCce--EEEEeCCCCCCCceeeecCCCCceeeee
Q psy17342        195 SWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFV-VGCEDGN--VYSACRHGNKAGNVECYEGHEGPVVGLS  271 (401)
Q Consensus       195 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~--i~~~~~~~~~~~~~~~~~~~~~~v~~i~  271 (401)
                      +||+.+.. ..   .+     ..+...+.+++|+ |+++.|+ +++.++.  |++||+....   ...+..|...+.+++
T Consensus       207 ~~d~~tg~-~~---~l-----~~~~~~~~~~~~s-pdg~~la~~~~~~g~~~i~~~d~~~~~---~~~l~~~~~~~~~~~  273 (415)
T 2hqs_A          207 IQTLANGA-VR---QV-----ASFPRHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNTEPT  273 (415)
T ss_dssp             EEETTTCC-EE---EE-----ECCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCC---EEECCCCSSCEEEEE
T ss_pred             EEECCCCc-EE---Ee-----ecCCCcccCEEEc-CCCCEEEEEEecCCCceEEEEECCCCC---EEeCcCCCCcccceE
Confidence            99998532 11   22     2255689999999 7888777 6666554  9999987543   456777888999999


Q ss_pred             cCccCCCCCCCcEEEEEeC-CC--eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecC---CEEEEEeCCCC
Q psy17342        272 SHRAQGHIDFSHLYLTSSY-DW--SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVA---GRVDLWNLNLD  345 (401)
Q Consensus       272 ~~~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d---~~i~iwd~~~~  345 (401)
                      |+|+      +++|++++. ++  .|.+||+.+++. ..+..+...+.+++|+|+|+ +|++++.+   ..|++||+.++
T Consensus       274 ~spd------g~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~-~l~~~~~~~g~~~i~~~d~~~~  345 (415)
T 2hqs_A          274 WFPD------SQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATG  345 (415)
T ss_dssp             ECTT------SSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSS-EEEEEEECSSCEEEEEEETTTC
T ss_pred             ECCC------CCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCC-EEEEEECcCCceEEEEEECCCC
Confidence            9999      788887775 45  677778877653 45556677899999999998 56665543   58999999987


Q ss_pred             CCCcceEEeecCCCCeEEEEecCCCcEEEEEecCC---cEEEEEeccCcc
Q psy17342        346 TEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG---AITMFDVGEVGI  392 (401)
Q Consensus       346 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg---~v~iw~~~~~~~  392 (401)
                      +... +   ..+ ..+.+++|+|+|++|++++.++   .|++||+..+..
T Consensus       346 ~~~~-l---~~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~  390 (415)
T 2hqs_A          346 GVQV-L---SST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  390 (415)
T ss_dssp             CEEE-C---CCS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             CEEE-e---cCC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcE
Confidence            6421 1   222 3789999999999999988877   799999986543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.95  E-value=2.3e-26  Score=220.66  Aligned_cols=331  Identities=11%  Similarity=0.061  Sum_probs=221.5

Q ss_pred             chhhhhccccccccccccccccccCCCCC-CCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCe
Q psy17342          2 DWAEAGESQISGTLHGLQADWNEEGDPGL-PQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL   80 (401)
Q Consensus         2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   80 (401)
                      .|.  ++.+++++.+| | +||...++.+ ..+.....+..        .++.....  .+ .+...|.+++|+|+ +.+
T Consensus        32 ~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~--------~l~~~~~~--~~-~~~~~v~~~~~spd-~~~   95 (706)
T 2z3z_A           32 QWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNA--------LMPEGCKF--QT-TDAFPSFRTLDAGR-GLV   95 (706)
T ss_dssp             EEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHT--------TC--------------CCCEEEEETTT-TEE
T ss_pred             cCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhh--------hccchhcc--cc-ccccCceeEEECCC-CeE
Confidence            465  67788888888 7 9998777642 22211111100        00000000  00 12256999999999 777


Q ss_pred             EEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC-----CCCCc
Q psy17342         81 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV-----QKKTP  155 (401)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~-----~~~~~  155 (401)
                      +++.           ++.|++||+.+++..  ....+...+.+++|+|++ +.|+.+ .++.|++|++.+     ++...
T Consensus        96 ~~~~-----------~~~i~~~d~~~~~~~--~l~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~~~~~~g~~~~  160 (706)
T 2z3z_A           96 VLFT-----------QGGLVGFDMLARKVT--YLFDTNEETASLDFSPVG-DRVAYV-RNHNLYIARGGKLGEGMSRAIA  160 (706)
T ss_dssp             EEEE-----------TTEEEEEETTTTEEE--EEECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBCTTSCCCCCEE
T ss_pred             EEEE-----------CCEEEEEECCCCceE--EccCCcccccCCcCCCCC-CEEEEE-ECCeEEEEecCcccccCCCcEE
Confidence            7777           799999999876432  234456789999999988 566664 689999999987     55321


Q ss_pred             eeeccccccCCCC--------------cEEEEEEeecCCceEEEEEe---------------------------------
Q psy17342        156 VHRTPLSVMAHTH--------------PVFCMSVIGTQNAHNLISIS---------------------------------  188 (401)
Q Consensus       156 ~~~~~~~~~~~~~--------------~v~~~~~~~~~~~~~l~s~~---------------------------------  188 (401)
                      .      ...+..              .+.++.|  +|++++|++++                                 
T Consensus       161 ~------~~~~~~~~~~g~~~~~ee~~~~~~~~~--SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~  232 (706)
T 2z3z_A          161 V------TIDGTETLVYGQAVHQREFGIEKGTFW--SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS  232 (706)
T ss_dssp             S------CSCCBTTEEESSCCGGGCTTCCCSEEE--CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred             e------ccCCCCCeEcccchhhhhcCCCceEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence            1      112222              2578899  99999999987                                 


Q ss_pred             CCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCc-----eEEEEeCCCCCCCceeeec--
Q psy17342        189 NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG-----NVYSACRHGNKAGNVECYE--  261 (401)
Q Consensus       189 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~~~~~~~~~~~~~~~~~--  261 (401)
                      .+..|.+||+.... ......     ...+...+.+++|+ |+++.|++++.++     .|++||..+..  ....+.  
T Consensus       233 ~~~~l~~~d~~~~~-~~~~~~-----~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~v~~~d~~~g~--~~~~~~~~  303 (706)
T 2z3z_A          233 HHVTVGIYHLATGK-TVYLQT-----GEPKEKFLTNLSWS-PDENILYVAEVNRAQNECKVNAYDAETGR--FVRTLFVE  303 (706)
T ss_dssp             CEEEEEEEETTTTE-EEECCC-----CSCTTCEEEEEEEC-TTSSEEEEEEECTTSCEEEEEEEETTTCC--EEEEEEEE
T ss_pred             CeeEEEEEECCCCc-eEeecc-----CCCCceeEeeEEEE-CCCCEEEEEEeCCCCCeeEEEEEECCCCc--eeeEEEEc
Confidence            44679999987522 111111     11356679999999 8999998877665     89999987541  122221  


Q ss_pred             CCC---CceeeeecCc--cCCCCCCCcEEEEEeCCCeEEEEEee-CCCceEEEeecCCceEE-EEECCCCCcEEEEEecC
Q psy17342        262 GHE---GPVVGLSSHR--AQGHIDFSHLYLTSSYDWSVKLWNIK-ENKPVHSFNEFRDYVMD-VQWSPINPALFATVEVA  334 (401)
Q Consensus       262 ~~~---~~v~~i~~~~--~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~-v~~~~~~~~~l~~~~~d  334 (401)
                      .+.   ..+.++.|+|  +      ++++++++.|+.++||++. +++.+..+..+...+.. ++|+|+++.++++++.+
T Consensus       304 ~~~~~~~~~~~~~~sp~~d------g~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~  377 (706)
T 2z3z_A          304 TDKHYVEPLHPLTFLPGSN------NQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEA  377 (706)
T ss_dssp             ECSSCCCCCSCCEECTTCS------SEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSS
T ss_pred             cCCCeECccCCceeecCCC------CEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCC
Confidence            122   2346789999  7      7899999999999999987 66777778777777877 79999998666666666


Q ss_pred             C----EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC----CcEEEEEeccCc
Q psy17342        335 G----RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK----GAITMFDVGEVG  391 (401)
Q Consensus       335 ~----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----g~v~iw~~~~~~  391 (401)
                      +    .|..||+.++.. ..    ..+...+..++|+|||++|+....+    +.|++||+.+++
T Consensus       378 ~~~~~~l~~~d~~~~~~-~~----l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          378 SPLERHFYCIDIKGGKT-KD----LTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             CTTCBEEEEEETTCCCC-EE----SCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             CCceEEEEEEEcCCCCc-ee----ccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            5    677778776542 22    2355678999999999998876544    459999998875

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=9.6e-26  Score=197.13  Aligned_cols=284  Identities=11%  Similarity=0.082  Sum_probs=187.7

Q ss_pred             CCcEEEEEeCcC-CCCCceEEEecCCCeeEEEEeCCCCceEEEEecC-CeEEEEECC--CCCCCceeeccccccCCCCcE
Q psy17342         95 PDGVCLIWNTKF-KKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS-GQIVLWDTR--VQKKTPVHRTPLSVMAHTHPV  170 (401)
Q Consensus        95 ~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d-g~v~iw~~~--~~~~~~~~~~~~~~~~~~~~v  170 (401)
                      .++.|++|++.. +.........+...+.+++|+|++ ++|++++.+ +.|.+|++.  ++......    .+..+. .+
T Consensus        13 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~-~~   86 (343)
T 1ri6_A           13 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGALTFAA----ESALPG-SL   86 (343)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEE----EEECSS-CC
T ss_pred             CCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCC-CEEEEeecCCCeEEEEEecCCCCceeecc----ccccCC-CC
Confidence            689999999963 322233334567789999999988 455555554 999999997  33322111    112223 77


Q ss_pred             EEEEEeecCCceEEEEEeC-CCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc-CCceEEEEe
Q psy17342        171 FCMSVIGTQNAHNLISISN-DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-EDGNVYSAC  248 (401)
Q Consensus       171 ~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~~~  248 (401)
                      ..++|  +|++.++++++. ++.|.+||+.. +.........     .....+.+++|+ ++++.+++++ .++.|++|+
T Consensus        87 ~~~~~--s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~-----~~~~~~~~~~~s-~dg~~l~~~~~~~~~v~~~d  157 (343)
T 1ri6_A           87 THIST--DHQGQFVFVGSYNAGNVSVTRLED-GLPVGVVDVV-----EGLDGCHSANIS-PDNRTLWVPALKQDRICLFT  157 (343)
T ss_dssp             SEEEE--CTTSSEEEEEETTTTEEEEEEEET-TEEEEEEEEE-----CCCTTBCCCEEC-TTSSEEEEEEGGGTEEEEEE
T ss_pred             cEEEE--cCCCCEEEEEecCCCeEEEEECCC-Cccccccccc-----cCCCCceEEEEC-CCCCEEEEecCCCCEEEEEE
Confidence            88999  999998776654 88899999952 1111111111     123358889999 7888777776 899999999


Q ss_pred             CCC-CCCCcee--eecC-CCCceeeeecCccCCCCCCCcEE-EEEeCCCeEEEEEeeC--CCc--eEEEeec------CC
Q psy17342        249 RHG-NKAGNVE--CYEG-HEGPVVGLSSHRAQGHIDFSHLY-LTSSYDWSVKLWNIKE--NKP--VHSFNEF------RD  313 (401)
Q Consensus       249 ~~~-~~~~~~~--~~~~-~~~~v~~i~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~--~~~--~~~~~~~------~~  313 (401)
                      +.. .......  .+.. ....+..++|+|+      ++++ +++..++.|.+||+..  ++.  ...+...      ..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd------g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  231 (343)
T 1ri6_A          158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN------EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR  231 (343)
T ss_dssp             ECTTSCEEEEEEEEEECSTTCCEEEEEECTT------SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCC
T ss_pred             ecCCCceeeecccccccCCCCCcceEEECCC------CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccC
Confidence            974 2211111  2222 3346788999998      5655 4555789999999953  433  2222211      23


Q ss_pred             ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC-CcceEEeecCCCCeEEEEecCCCcEEEEEe-cCCcEEEEEec--c
Q psy17342        314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE-VPATSAIVEGAPALSRVTWTPNGTQLCVGD-EKGAITMFDVG--E  389 (401)
Q Consensus       314 ~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~v~iw~~~--~  389 (401)
                      .+.+++|+|+++.+++++..++.|.+||+..... ...... ......+..++|+|+|++|++++ .++.|.+|++.  +
T Consensus       232 ~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~  310 (343)
T 1ri6_A          232 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF-QPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQ  310 (343)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE-EECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred             CccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeee-ecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence            5678999999986666777899999999983211 122221 22233488999999999888887 68999999665  5


Q ss_pred             Cccceeeeeec
Q psy17342        390 VGIACLKFITS  400 (401)
Q Consensus       390 ~~~~~l~~~~~  400 (401)
                      ++++.+..++.
T Consensus       311 g~~~~~~~~~~  321 (343)
T 1ri6_A          311 GLLHEKGRYAV  321 (343)
T ss_dssp             TEEEEEEEEEC
T ss_pred             ceeeEcccccc
Confidence            65566665554

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=5.8e-26  Score=209.39  Aligned_cols=286  Identities=12%  Similarity=0.054  Sum_probs=206.2

Q ss_pred             EecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEEC--C
Q psy17342         72 DWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDT--R  149 (401)
Q Consensus        72 ~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~--~  149 (401)
                      +|+|++..+++..          .+++|.+||..+++.+..+..++  .+..++|+|++ ++|++++.++.|.+||+  .
T Consensus       144 ~~~p~~~~~vs~~----------~d~~V~v~D~~t~~~~~~i~~g~--~~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~  210 (543)
T 1nir_A          144 DLDLPNLFSVTLR----------DAGQIALVDGDSKKIVKVIDTGY--AVHISRMSASG-RYLLVIGRDARIDMIDLWAK  210 (543)
T ss_dssp             CCCGGGEEEEEEG----------GGTEEEEEETTTCCEEEEEECST--TEEEEEECTTS-CEEEEEETTSEEEEEETTSS
T ss_pred             ccCCCCEEEEEEc----------CCCeEEEEECCCceEEEEEecCc--ccceEEECCCC-CEEEEECCCCeEEEEECcCC
Confidence            3889886666655          78999999999888776554443  38999999988 68888888999999999  5


Q ss_pred             CCCCCceeeccccccCCCCcEEEEEEeecC----CceEEEEEeC-CCcEEEeeccCCCCCcccccccccccc----CCcc
Q psy17342        150 VQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ----NAHNLISISN-DGRLCSWSLEMLSSPQETRDLQYNNKQ----TKNL  220 (401)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~----~~~~  220 (401)
                      +.+...      .+. +...+..++|  +|    +++++++++. +++|.+||..+. ++...+........    ....
T Consensus       211 t~~~~~------~i~-~g~~p~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~-~~~~~i~~~g~~~~~~~~~~~~  280 (543)
T 1nir_A          211 EPTKVA------EIK-IGIEARSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVDTQTYHPEP  280 (543)
T ss_dssp             SCEEEE------EEE-CCSEEEEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSSSCCEESCC
T ss_pred             CCcEEE------EEe-cCCCcceEEe--CCCcCCCCCEEEEEEccCCeEEEEecccc-ccceeecccCcccCccccccCC
Confidence            543221      122 4556789999  89    9999998884 899999998763 22222222110000    0223


Q ss_pred             ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEE-eCCCeEEEEEe
Q psy17342        221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS-SYDWSVKLWNI  299 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~-~~d~~i~iwd~  299 (401)
                      .+..+.++|.....+++...++.|.+||........+..+ .+...+.++.|+|+      +++|+++ ..+++|.+||.
T Consensus       281 ~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spd------g~~l~va~~~~~~v~v~D~  353 (543)
T 1nir_A          281 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSS------HRYFMTAANNSNKVAVIDS  353 (543)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTT------SCEEEEEEGGGTEEEEEET
T ss_pred             ceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCC------CCEEEEEecCCCeEEEEEC
Confidence            6889999954566677888899999999875432222233 35667889999998      6766554 45899999999


Q ss_pred             eCCCceEEEee----cCCceEEEEECCCCCcEEEEEe-cCCEEEEEeCCC-------CCCCcceEEeecCCCCeEEEEec
Q psy17342        300 KENKPVHSFNE----FRDYVMDVQWSPINPALFATVE-VAGRVDLWNLNL-------DTEVPATSAIVEGAPALSRVTWT  367 (401)
Q Consensus       300 ~~~~~~~~~~~----~~~~v~~v~~~~~~~~~l~~~~-~d~~i~iwd~~~-------~~~~~~~~~~~~~~~~v~~~~~s  367 (401)
                      .+++++..+..    |.+....+ ++|++..+++++. .|++|.+||+.+       .+.+..+   ..+...+..++++
T Consensus       354 ~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l---~~~g~~~~~v~~~  429 (543)
T 1nir_A          354 KDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL---QGQGGGSLFIKTH  429 (543)
T ss_dssp             TTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE---ECSCSCCCCEECC
T ss_pred             CCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE---EcCCCCceEEEcC
Confidence            99998888874    55433333 5787445777775 589999999987       3333332   3455667889999


Q ss_pred             CCCcEEEEEe-------cCCcEEEEEeccCc
Q psy17342        368 PNGTQLCVGD-------EKGAITMFDVGEVG  391 (401)
Q Consensus       368 ~~g~~l~~~~-------~dg~v~iw~~~~~~  391 (401)
                      |+|++|++++       .+++|.+||+.+.+
T Consensus       430 pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~  460 (543)
T 1nir_A          430 PKSSHLYVDTTFNPDARISQSVAVFDLKNLD  460 (543)
T ss_dssp             TTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             CCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence            9999999987       36799999999885

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=3e-25  Score=214.11  Aligned_cols=290  Identities=7%  Similarity=-0.023  Sum_probs=203.7

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCc-----EEEEEeCcCCCCCceEEEecC----------------------
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDG-----VCLIWNTKFKKTTPEFEFFCQ----------------------  118 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~----------------------  118 (401)
                      ..|.+++|+|||++|++++.         .|+     .|++||+.+++.......+..                      
T Consensus        37 ~~~~~~~~SpdG~~la~~~~---------~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRG---------KDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAA  107 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEEC---------CSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------C
T ss_pred             CCCCCceEecCCCEEEEEec---------cCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhcc
Confidence            56999999999999999992         266     999999987764432221111                      


Q ss_pred             -CCeeEEEEeCCCCceEEEEecCCeEEEEECCCC---CCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEE
Q psy17342        119 -SPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQ---KKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLC  194 (401)
Q Consensus       119 -~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~  194 (401)
                       ..+.+++|+|++ ++|++++. +.|.+||+.++   ...       .+..|...+..++|  +|+|++|+.++. +.|.
T Consensus       108 ~~~v~~~~~SpDg-~~l~~~~~-~~i~~~d~~~~~~~~~~-------~l~~~~~~~~~~~~--SPDG~~la~~~~-~~i~  175 (741)
T 2ecf_A          108 MTGIVDYQWSPDA-QRLLFPLG-GELYLYDLKQEGKAAVR-------QLTHGEGFATDAKL--SPKGGFVSFIRG-RNLW  175 (741)
T ss_dssp             CEESCCCEECTTS-SEEEEEET-TEEEEEESSSCSTTSCC-------BCCCSSSCEEEEEE--CTTSSEEEEEET-TEEE
T ss_pred             ccCcceeEECCCC-CEEEEEeC-CcEEEEECCCCCcceEE-------EcccCCcccccccC--CCCCCEEEEEeC-CcEE
Confidence             237899999988 56666654 99999999887   332       24567788999999  999999999875 5899


Q ss_pred             EeeccCCCCCccccccccc-cccC--------CccceEEEEeccCCCCeEEEEcCCc-----------------------
Q psy17342        195 SWSLEMLSSPQETRDLQYN-NKQT--------KNLAVLSLAFPQNDVNNFVVGCEDG-----------------------  242 (401)
Q Consensus       195 ~wd~~~~~~~~~~~~~~~~-~~~~--------~~~~v~~~~~~~~~~~~l~~~~~d~-----------------------  242 (401)
                      +||+.... .......... ...+        ....+..++|+ |+++.|++++.|+                       
T Consensus       176 ~~d~~~g~-~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S-pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~  253 (741)
T 2ecf_A          176 VIDLASGR-QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWA-PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY  253 (741)
T ss_dssp             EEETTTTE-EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEEC-TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred             EEecCCCC-EEEeccCCccceeccccceeeeeccccccceEEC-CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence            99987521 1111110000 0000        00124789999 8999999887665                       


Q ss_pred             ----------eEEEEeCCC-CCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC-----CCeEEEEEeeCCCceE
Q psy17342        243 ----------NVYSACRHG-NKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-----DWSVKLWNIKENKPVH  306 (401)
Q Consensus       243 ----------~i~~~~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~  306 (401)
                                .|++||+.+ .+...+.....|...+.+++| |+      ++.|+.++.     +..|++||+.+++...
T Consensus       254 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pD------g~~l~~~~~~~~~~~~~i~~~d~~~g~~~~  326 (741)
T 2ecf_A          254 PAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RD------PQHLSFQRQSRDQKKLDLVEVTLASNQQRV  326 (741)
T ss_dssp             CBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EE------TTEEEEEEEETTSSEEEEEEEETTTCCEEE
T ss_pred             CCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CC------CCEEEEEEecccCCeEEEEEEECCCCceEE
Confidence                      788899875 432111111147788999999 99      788776653     5689999999988877


Q ss_pred             EEeecCC----ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEE-EecCCCcEEE-EEecCC
Q psy17342        307 SFNEFRD----YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRV-TWTPNGTQLC-VGDEKG  380 (401)
Q Consensus       307 ~~~~~~~----~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~-~~~~dg  380 (401)
                      .+..+..    .+..++|+|+|+ ++++++.||.++||.+.....   ......+...+..+ .|+|+|+.|+ +++.++
T Consensus       327 ~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~---~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~  402 (741)
T 2ecf_A          327 LAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK---AAALTHGNWSVDELLAVDEKAGLAYFRAGIES  402 (741)
T ss_dssp             EEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSC---EEESCCSSSCEEEEEEEETTTTEEEEEECSSC
T ss_pred             EEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCCC---eeeeeecceEEEeEeEEeCCCCEEEEEEeCCC
Confidence            7766543    346899999998 888899999888887653222   22223456667777 5999998775 455555


Q ss_pred             --cEEEEEecc
Q psy17342        381 --AITMFDVGE  389 (401)
Q Consensus       381 --~v~iw~~~~  389 (401)
                        .++||++..
T Consensus       403 ~~~~~l~~~~~  413 (741)
T 2ecf_A          403 ARESQIYAVPL  413 (741)
T ss_dssp             TTCBEEEEEET
T ss_pred             CceEEEEEEEc
Confidence              899999975

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=1.9e-25  Score=194.40  Aligned_cols=288  Identities=8%  Similarity=0.056  Sum_probs=194.4

Q ss_pred             EEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC
Q psy17342         71 MDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV  150 (401)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~  150 (401)
                      ..|.+++..++++.         +.++.|.+||..+++.......+ ...+ .++|+|++..+++++..++.|.+||..+
T Consensus         3 ~~~~~~~~~~~v~~---------~~~~~v~~~d~~~~~~~~~~~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~   71 (331)
T 3u4y_A            3 AMFQTTSNFGIVVE---------QHLRRISFFSTDTLEILNQITLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQL   71 (331)
T ss_dssp             ----CCCCEEEEEE---------GGGTEEEEEETTTCCEEEEEECC-CCEE-EEEECSSSCEEEEEESTTCEEEEEECSS
T ss_pred             eeEcCCCCEEEEEe---------cCCCeEEEEeCcccceeeeEEcc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCC
Confidence            34667777766655         26899999999988766555433 4455 9999999865666666688999999988


Q ss_pred             CCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC---cEEEeeccCCCCCccccccccccccCCccceEEEEe
Q psy17342        151 QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG---RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF  227 (401)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  227 (401)
                      ++.. .    ..+..+..+..+++|  +|++.+++++..++   .|.+||+.... ....  +.      ....+.+++|
T Consensus        72 ~~~~-~----~~~~~~~~~~~~~~~--s~dg~~l~~~~~~~~~~~i~v~d~~~~~-~~~~--~~------~~~~~~~~~~  135 (331)
T 3u4y_A           72 EPPK-V----VAIQEGQSSMADVDI--TPDDQFAVTVTGLNHPFNMQSYSFLKNK-FIST--IP------IPYDAVGIAI  135 (331)
T ss_dssp             SSCE-E----EEEEECSSCCCCEEE--CTTSSEEEECCCSSSSCEEEEEETTTTE-EEEE--EE------CCTTEEEEEE
T ss_pred             Ccee-E----EecccCCCCccceEE--CCCCCEEEEecCCCCcccEEEEECCCCC-eEEE--EE------CCCCccceEE
Confidence            7641 1    112345555555888  99999999555553   89999997522 1111  11      2335689999


Q ss_pred             ccCCCCeEEEE-cCCce-EEEEeCCCCCCCce---eeecCCCCceeeeecCccCCCCCCCc-EEEEEeCCCeEEEEEeeC
Q psy17342        228 PQNDVNNFVVG-CEDGN-VYSACRHGNKAGNV---ECYEGHEGPVVGLSSHRAQGHIDFSH-LYLTSSYDWSVKLWNIKE  301 (401)
Q Consensus       228 ~~~~~~~l~~~-~~d~~-i~~~~~~~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~  301 (401)
                      + |++++++++ ..++. |.+|++..... ..   ............++|+|+      ++ +++++..++.|++||+.+
T Consensus       136 s-pdg~~l~~~~~~~~~~i~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~spd------g~~l~v~~~~~~~v~v~d~~~  207 (331)
T 3u4y_A          136 S-PNGNGLILIDRSSANTVRRFKIDADGV-LFDTGQEFISGGTRPFNITFTPD------GNFAFVANLIGNSIGILETQN  207 (331)
T ss_dssp             C-TTSSCEEEEEETTTTEEEEEEECTTCC-EEEEEEEEECSSSSEEEEEECTT------SSEEEEEETTTTEEEEEECSS
T ss_pred             C-CCCCEEEEEecCCCceEEEEEECCCCc-EeecCCccccCCCCccceEECCC------CCEEEEEeCCCCeEEEEECCC
Confidence            9 788755544 55577 99999874221 11   111133455789999998      66 455555689999999999


Q ss_pred             CCc---eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeec---CC---CCeEEEEecCCCcE
Q psy17342        302 NKP---VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVE---GA---PALSRVTWTPNGTQ  372 (401)
Q Consensus       302 ~~~---~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~---~~v~~~~~s~~g~~  372 (401)
                      ++.   +..+.. ...+..++|+|+|+.++++...++.|.+||+.+++..........   +.   .....++|+|+|++
T Consensus       208 ~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  286 (331)
T 3u4y_A          208 PENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETK  286 (331)
T ss_dssp             TTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSE
T ss_pred             CcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCE
Confidence            888   777765 466789999999985556666678999999988765211111101   01   12355899999998


Q ss_pred             EEEEe-cCCcEEEEEeccCccce
Q psy17342        373 LCVGD-EKGAITMFDVGEVGIAC  394 (401)
Q Consensus       373 l~~~~-~dg~v~iw~~~~~~~~~  394 (401)
                      |++++ .++.|.+||+.+..+..
T Consensus       287 l~v~~~~~~~v~v~d~~~~~~~~  309 (331)
T 3u4y_A          287 LFISANISRELKVFTISGKVVGY  309 (331)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEE
T ss_pred             EEEecCCCCcEEEEEecCCcccc
Confidence            86655 46699999998865433

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=8.1e-25  Score=186.97  Aligned_cols=257  Identities=12%  Similarity=0.078  Sum_probs=189.8

Q ss_pred             CCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC-CCCCceeeccccccCC-CCcEE
Q psy17342         94 EPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV-QKKTPVHRTPLSVMAH-THPVF  171 (401)
Q Consensus        94 ~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~-~~~~~~~~~~~~~~~~-~~~v~  171 (401)
                      +.++.|++||+.+++..  ....+...|.+++|+|++ ++|++++ ++.|.+||+.+ ++....      ...+ ...+.
T Consensus        19 ~~~~~i~~~d~~~~~~~--~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~~~~~~~------~~~~~~~~~~   88 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRKMR--VVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGDPSPEKV------DTGFATICNN   88 (297)
T ss_dssp             CCCEEEEEEETTTTEEE--EEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSCCSCEEC------CCTTCCCBCS
T ss_pred             CcceeEEEEeCCCCcee--eeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCCCCceEe------cccccccccc
Confidence            36899999999876543  344568899999999988 5777765 88999999988 654321      1233 46788


Q ss_pred             EEEEeecCCceEEEEEe--CCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEE-EEcCCceEEEEe
Q psy17342        172 CMSVIGTQNAHNLISIS--NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFV-VGCEDGNVYSAC  248 (401)
Q Consensus       172 ~~~~~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~i~~~~  248 (401)
                      +++|  +|++.+|++++  .++...+|.++.......  .+.      ....+..++|+ ++++.++ ++..++.+.+|+
T Consensus        89 ~~~~--spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~--~~~------~~~~~~~~~~s-pdg~~l~~~~~~~~~~~l~~  157 (297)
T 2ojh_A           89 DHGI--SPDGALYAISDKVEFGKSAIYLLPSTGGTPR--LMT------KNLPSYWHGWS-PDGKSFTYCGIRDQVFDIYS  157 (297)
T ss_dssp             CCEE--CTTSSEEEEEECTTTSSCEEEEEETTCCCCE--ECC------SSSSEEEEEEC-TTSSEEEEEEEETTEEEEEE
T ss_pred             ceEE--CCCCCEEEEEEeCCCCcceEEEEECCCCceE--Eee------cCCCccceEEC-CCCCEEEEEECCCCceEEEE
Confidence            9999  99999999998  446677776653222211  111      22348889999 7888776 778899999998


Q ss_pred             CCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe-CCCeEEEEEee-CCCceEEEeecCCceEEEEECCCCCc
Q psy17342        249 RHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS-YDWSVKLWNIK-ENKPVHSFNEFRDYVMDVQWSPINPA  326 (401)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~-~~~~~~~~~~~~~~v~~v~~~~~~~~  326 (401)
                      ++.... ....+..+...+.++.|+|+      +++++.++ .++.+++|++. .+..+..+..|...+..++|+|+++ 
T Consensus       158 ~~~~~~-~~~~~~~~~~~~~~~~~s~d------g~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-  229 (297)
T 2ojh_A          158 MDIDSG-VETRLTHGEGRNDGPDYSPD------GRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGD-  229 (297)
T ss_dssp             EETTTC-CEEECCCSSSCEEEEEECTT------SSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSS-
T ss_pred             EECCCC-cceEcccCCCccccceECCC------CCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCC-
Confidence            653332 34566678889999999998      67666655 58999999997 5667777887888899999999998 


Q ss_pred             EEEEEecC-----------CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCC
Q psy17342        327 LFATVEVA-----------GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG  380 (401)
Q Consensus       327 ~l~~~~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  380 (401)
                      +|++++.+           +.|++||+.+++...... ...+...+..++|+|+|++|++++.+.
T Consensus       230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          230 KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD-LFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE-EEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec-cCCCCcccccceECCCCCEEEEEEecc
Confidence            56655554           579999998876433322 235667889999999999998887654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=5.7e-25  Score=192.19  Aligned_cols=306  Identities=9%  Similarity=0.029  Sum_probs=194.7

Q ss_pred             ccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEeccCC
Q psy17342         10 QISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNK   89 (401)
Q Consensus        10 ~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~   89 (401)
                      +++++.++.+++|++.....                     +.....     ..+...+.+++|+|++++|++++.    
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~---------------------~~~~~~-----~~~~~~~~~~~~spdg~~l~~~~~----   57 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHEGA---------------------LTLTQV-----VDVPGQVQPMVVSPDKRYLYVGVR----   57 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSC---------------------EEEEEE-----EECSSCCCCEEECTTSSEEEEEET----
T ss_pred             EEeCCCCCeEEEEEECCCCc---------------------EEEeee-----EecCCCCceEEECCCCCEEEEeec----
Confidence            34447799999999854221                     000000     123356889999999999999982    


Q ss_pred             CCCCCCCcEEEEEeCc--CCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCC
Q psy17342         90 EAPNEPDGVCLIWNTK--FKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHT  167 (401)
Q Consensus        90 ~~~~~~d~~v~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  167 (401)
                           .++.|.+|+++  +++......+.....+..++|+|++..+++++..++.|.+||+..+.....    .......
T Consensus        58 -----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~----~~~~~~~  128 (343)
T 1ri6_A           58 -----PEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV----VDVVEGL  128 (343)
T ss_dssp             -----TTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE----EEEECCC
T ss_pred             -----CCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccc----cccccCC
Confidence                 34999999997  444333333343458899999998855555655689999999952221111    1112233


Q ss_pred             CcEEEEEEeecCCceEEEEEe-CCCcEEEeeccCCCCCcccc--ccccccccCCccceEEEEeccCCCCeEE-EEcCCce
Q psy17342        168 HPVFCMSVIGTQNAHNLISIS-NDGRLCSWSLEMLSSPQETR--DLQYNNKQTKNLAVLSLAFPQNDVNNFV-VGCEDGN  243 (401)
Q Consensus       168 ~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~  243 (401)
                      ..+.+++|  +|++.++++++ .++.|.+||+...+......  ...    ......+..++|+ +++++++ ++..++.
T Consensus       129 ~~~~~~~~--s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-pdg~~l~~~~~~~~~  201 (343)
T 1ri6_A          129 DGCHSANI--SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT----TVEGAGPRHMVFH-PNEQYAYCVNELNSS  201 (343)
T ss_dssp             TTBCCCEE--CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE----CSTTCCEEEEEEC-TTSSEEEEEETTTTE
T ss_pred             CCceEEEE--CCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc----cCCCCCcceEEEC-CCCCEEEEEeCCCCE
Confidence            45888999  99998888777 89999999997522222111  111    1123467889999 7888665 4458899


Q ss_pred             EEEEeCCCCCCCc--eeeec----CC--CCceeeeecCccCCCCCCCcEEE-EEeCCCeEEEEEeeC----CCceEEEee
Q psy17342        244 VYSACRHGNKAGN--VECYE----GH--EGPVVGLSSHRAQGHIDFSHLYL-TSSYDWSVKLWNIKE----NKPVHSFNE  310 (401)
Q Consensus       244 i~~~~~~~~~~~~--~~~~~----~~--~~~v~~i~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~----~~~~~~~~~  310 (401)
                      |.+|++.......  .....    ++  ...+..++|+|+      +++++ ++..++.|.+||+..    .+.+..+..
T Consensus       202 i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d------g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~  275 (343)
T 1ri6_A          202 VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD------GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT  275 (343)
T ss_dssp             EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT------SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC
T ss_pred             EEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC------CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC
Confidence            9999996433222  22222    11  234668999998      55555 555799999999982    234444554


Q ss_pred             cCCceEEEEECCCCCcEEEEEecCCEEEEEeCC--CCCCCcceEEeecCCCCeEEEEecCCC
Q psy17342        311 FRDYVMDVQWSPINPALFATVEVAGRVDLWNLN--LDTEVPATSAIVEGAPALSRVTWTPNG  370 (401)
Q Consensus       311 ~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g  370 (401)
                      +.. +.+++|+|+++.+++++..++.|.+|++.  +++......  ........+++|.++.
T Consensus       276 ~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~--~~~g~~p~~i~~~~~~  334 (343)
T 1ri6_A          276 ETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGR--YAVGQGPMWVVVNAHE  334 (343)
T ss_dssp             SSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEE--EECSSSCCEEEEEEEC
T ss_pred             CCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccc--cccCCCCeeEEEEccc
Confidence            444 88999999998544444478999999654  443222222  2223445667777654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=4.8e-25  Score=212.70  Aligned_cols=339  Identities=9%  Similarity=0.030  Sum_probs=224.9

Q ss_pred             chhhhhcccccccc-cc-----ccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeee--ccccccccceEEEEe
Q psy17342          2 DWAEAGESQISGTL-HG-----LQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFF--DEKWSKNRNVTYMDW   73 (401)
Q Consensus         2 ~~~~~~~~~~~g~~-~g-----~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~   73 (401)
                      .|..-|.++++++. ||     .+++||....+....+..... .     ..+..+.......  ..+......|.+++|
T Consensus        43 ~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (741)
T 2ecf_A           43 KVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVV-L-----PGTETLSDEEKARRERQRIAAMTGIVDYQW  116 (741)
T ss_dssp             EECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGT-C-------------------------CCEESCCCEE
T ss_pred             eEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhc-c-----cccccccchhhhhhhhhhhccccCcceeEE
Confidence            36667888999988 88     899999877653211110000 0     0000000000000  000011145889999


Q ss_pred             cCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCC---CCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC
Q psy17342         74 STQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK---KTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV  150 (401)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~  150 (401)
                      +|||++|++++           ++.|++||+.++   ... . ...+...+.+++|+|++ +.|+.++ ++.|.+||+.+
T Consensus       117 SpDg~~l~~~~-----------~~~i~~~d~~~~~~~~~~-~-l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~  181 (741)
T 2ecf_A          117 SPDAQRLLFPL-----------GGELYLYDLKQEGKAAVR-Q-LTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLAS  181 (741)
T ss_dssp             CTTSSEEEEEE-----------TTEEEEEESSSCSTTSCC-B-CCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTT
T ss_pred             CCCCCEEEEEe-----------CCcEEEEECCCCCcceEE-E-cccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCC
Confidence            99999999999           499999999976   332 2 23456789999999988 5666665 67999999987


Q ss_pred             CCCCceeeccccccCCCC----------------cEEEEEEeecCCceEEEEEeCCC-----------------------
Q psy17342        151 QKKTPVHRTPLSVMAHTH----------------PVFCMSVIGTQNAHNLISISNDG-----------------------  191 (401)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~----------------~v~~~~~~~~~~~~~l~s~~~dg-----------------------  191 (401)
                      ++....      ...+..                .+.+++|  +|++++|++++.|+                       
T Consensus       182 g~~~~~------~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~  253 (741)
T 2ecf_A          182 GRQMQL------TADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY  253 (741)
T ss_dssp             TEEEEC------CCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred             CCEEEe------ccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence            653211      112222                1467889  99999999988765                       


Q ss_pred             ----------cEEEeeccC-CCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC-----CceEEEEeCCCCCCC
Q psy17342        192 ----------RLCSWSLEM-LSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE-----DGNVYSACRHGNKAG  255 (401)
Q Consensus       192 ----------~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d~~i~~~~~~~~~~~  255 (401)
                                .|.+||+.. .. ...   +..  ...+...+..++| | +++.|++++.     +..|++||..+..  
T Consensus       254 ~~~g~~~~~~~l~~~d~~~~~~-~~~---~~~--~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~--  323 (741)
T 2ecf_A          254 PAAGDANVQVKLGVISPAEQAQ-TQW---IDL--GKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQ--  323 (741)
T ss_dssp             CBTTSCCCEEEEEEECSSTTCC-CEE---ECC--CSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCC--
T ss_pred             CCCCCCCCeeEEEEEECCCCCc-eEE---ecC--CCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCc--
Confidence                      678888764 32 111   110  1136678999999 4 7888776643     5679999987543  


Q ss_pred             ceeeecCCCC----ceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEee-CCCceEEEeecCCceEEE-EECCCCCcEEE
Q psy17342        256 NVECYEGHEG----PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIK-ENKPVHSFNEFRDYVMDV-QWSPINPALFA  329 (401)
Q Consensus       256 ~~~~~~~~~~----~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~v-~~~~~~~~~l~  329 (401)
                      ....+..+..    .+.+++|+|+      ++++++++.|+.++||.+. .++ ...+..|...+..+ .|+|+++.+++
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~spd------g~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~  396 (741)
T 2ecf_A          324 QRVLAHETSPTWVPLHNSLRFLDD------GSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYF  396 (741)
T ss_dssp             EEEEEEEECSSCCCCCSCCEECTT------SCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEE
T ss_pred             eEEEEEcCCCCcCCcCCceEECCC------CeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEE
Confidence            3444444432    4568999998      6788999999988888775 345 77777778888887 59999986666


Q ss_pred             EEecCC--EEEEEeCCC-CCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC----CcEEEEEeccC
Q psy17342        330 TVEVAG--RVDLWNLNL-DTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK----GAITMFDVGEV  390 (401)
Q Consensus       330 ~~~~d~--~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----g~v~iw~~~~~  390 (401)
                      +++.++  .++||++.. +.....+    .....+..++|+|||++|+....+    ..+++|+...+
T Consensus       397 ~~~~~~~~~~~l~~~~~~g~~~~~l----~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          397 RAGIESARESQIYAVPLQGGQPQRL----SKAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             EECSSCTTCBEEEEEETTCCCCEEC----CCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred             EEeCCCCceEEEEEEEcCCCCeeec----ccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence            777666  899999864 3322222    235668899999999998876544    46888887654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.94  E-value=5.1e-24  Score=186.64  Aligned_cols=287  Identities=10%  Similarity=0.040  Sum_probs=186.5

Q ss_pred             CCcEEEEEeCcC--CCCCceEEEecCCCeeEEEEeCCCCceEEEEec--CCeEEEEECCCCCCCceeeccccccCCCCcE
Q psy17342         95 PDGVCLIWNTKF--KKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTY--SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPV  170 (401)
Q Consensus        95 ~d~~v~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  170 (401)
                      .++.|.+|+++.  ++........+...+..++|+|++. +++++..  ++.|.+|++..+......    ....+...+
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~----~~~~~~~~p   88 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN----TVVAPGTPP   88 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEE----EEEEESCCC
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEee----eeecCCCCC
Confidence            456788887764  3333222334567788899999884 5555432  689999999665432211    123456678


Q ss_pred             EEEEEeecCCceEEEEEe-CCCcEEEeeccCCCCCccccccccccc----cCCccceEEEEeccCCCCeEEEEcCCceEE
Q psy17342        171 FCMSVIGTQNAHNLISIS-NDGRLCSWSLEMLSSPQETRDLQYNNK----QTKNLAVLSLAFPQNDVNNFVVGCEDGNVY  245 (401)
Q Consensus       171 ~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  245 (401)
                      ..++|  +|++++|++++ .++.+.+|++...+.............    ......+.+++|+ |+++.+++...++.|+
T Consensus        89 ~~~a~--spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s-pdg~l~v~~~~~~~v~  165 (347)
T 3hfq_A           89 AYVAV--DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT-PDNRLAVIDLGSDKVY  165 (347)
T ss_dssp             SEEEE--ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC-TTSCEEEEETTTTEEE
T ss_pred             EEEEE--CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC-CCCcEEEEeCCCCEEE
Confidence            88999  99999888887 688999999964222222111111000    0122358889999 7888777777789999


Q ss_pred             EEeCCC-CCCCceeeecCC-CCceeeeecCccCCCCCCCcEE-EEEeCCCeEEEEEeeC--CCc--eEEEeecC------
Q psy17342        246 SACRHG-NKAGNVECYEGH-EGPVVGLSSHRAQGHIDFSHLY-LTSSYDWSVKLWNIKE--NKP--VHSFNEFR------  312 (401)
Q Consensus       246 ~~~~~~-~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~--~~~--~~~~~~~~------  312 (401)
                      +|++.. ........+..+ ...+..++|+|+      ++++ +++..++.|.+|++..  ++.  +..+....      
T Consensus       166 ~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spd------g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~  239 (347)
T 3hfq_A          166 VYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPD------GQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAH  239 (347)
T ss_dssp             EEEECTTSCEEEEEEEECCTTCCEEEEEECTT------SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSC
T ss_pred             EEEECCCCcEEEeeeEEcCCCCCCceEEECCC------CCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCC
Confidence            999872 221112222222 235678999998      6744 4456689999999985  432  22333222      


Q ss_pred             CceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC-CcEEEEEe--cc
Q psy17342        313 DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK-GAITMFDV--GE  389 (401)
Q Consensus       313 ~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-g~v~iw~~--~~  389 (401)
                      ..+..++|+|+|+.++++...++.|.+|++........+.....+...+..++|+|||++|++++.+ +.|.+|++  .+
T Consensus       240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~t  319 (347)
T 3hfq_A          240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTS  319 (347)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCC
Confidence            3588999999998666777778999999997432222222222334567899999999998888764 88999966  45


Q ss_pred             Ccccee
Q psy17342        390 VGIACL  395 (401)
Q Consensus       390 ~~~~~l  395 (401)
                      +++..+
T Consensus       320 g~l~~~  325 (347)
T 3hfq_A          320 GKLSLL  325 (347)
T ss_dssp             CCEEEE
T ss_pred             CeEEec
Confidence            554433

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=8.1e-24  Score=185.73  Aligned_cols=286  Identities=12%  Similarity=0.098  Sum_probs=203.4

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIV  144 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~  144 (401)
                      ...+..++|+|+++.+++++....   ....++.|.+||..+++....+..  ...+..++|+|++..+++++..++.|.
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~---~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~  114 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSR---KLDKGGVVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNTVNSAVT  114 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCT---TTEESEEEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCc---CCCCCccEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEecCCCEEE
Confidence            356889999999999988883100   000167999999998776554433  456889999999866777777789999


Q ss_pred             EEECCCCCCCceeeccccc---cCCCCcEEEEEEeecCCceEEEEEe--CCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342        145 LWDTRVQKKTPVHRTPLSV---MAHTHPVFCMSVIGTQNAHNLISIS--NDGRLCSWSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       145 iw~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                      +||..+++...........   ......+.+++|  +++++++++++  .++.|.+||+.+.. ..  ..+.     .+.
T Consensus       115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~dg~~l~~~~~~~~~~i~~~d~~~~~-~~--~~~~-----~~~  184 (353)
T 3vgz_A          115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVA--DDATNTVYISGIGKESVIWVVDGGNIK-LK--TAIQ-----NTG  184 (353)
T ss_dssp             EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEE--ETTTTEEEEEEESSSCEEEEEETTTTE-EE--EEEC-----CCC
T ss_pred             EEeCCCCeeEEEEecCCCccccccCCCCCceEEE--CCCCCEEEEEecCCCceEEEEcCCCCc-eE--EEec-----CCC
Confidence            9999887653222110000   000112688998  89988777765  47889999987522 11  1111     123


Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC----CCCceeeeecCccCCCCCCCcEEEEEe-CCCeE
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG----HEGPVVGLSSHRAQGHIDFSHLYLTSS-YDWSV  294 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~~i  294 (401)
                      ..+.+++|+ ++++.+++++.++.|.+||....+  ....+..    +...+.+++|+|+      +++++.++ .++.|
T Consensus       185 ~~~~~~~~s-~dg~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~s~d------g~~l~~~~~~~~~v  255 (353)
T 3vgz_A          185 KMSTGLALD-SEGKRLYTTNADGELITIDTADNK--ILSRKKLLDDGKEHFFINISLDTA------RQRAFITDSKAAEV  255 (353)
T ss_dssp             TTCCCCEEE-TTTTEEEEECTTSEEEEEETTTTE--EEEEEECCCSSSCCCEEEEEEETT------TTEEEEEESSSSEE
T ss_pred             CccceEEEC-CCCCEEEEEcCCCeEEEEECCCCe--EEEEEEcCCCCCCcccceEEECCC------CCEEEEEeCCCCEE
Confidence            357788999 899999999999999999987543  3444432    4556788999998      56555554 46999


Q ss_pred             EEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEE
Q psy17342        295 KLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLC  374 (401)
Q Consensus       295 ~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  374 (401)
                      .+||..+++.+..+....  ...++|+|+++.++++...++.|.+||+.+++....+    .....+..++|+|+|++|+
T Consensus       256 ~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~----~~~~~~~~~~~s~dg~~l~  329 (353)
T 3vgz_A          256 LVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF----DTPTHPNSLALSADGKTLY  329 (353)
T ss_dssp             EEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE----ECCSEEEEEEECTTSCEEE
T ss_pred             EEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE----ecCCCCCeEEEcCCCCEEE
Confidence            999999999888877643  2579999999866677767999999999887654443    3345689999999999887


Q ss_pred             EEecCC
Q psy17342        375 VGDEKG  380 (401)
Q Consensus       375 ~~~~dg  380 (401)
                      ++..++
T Consensus       330 v~~~~~  335 (353)
T 3vgz_A          330 VSVKQK  335 (353)
T ss_dssp             EEEECC
T ss_pred             EEEccc
Confidence            776653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=2.2e-24  Score=188.01  Aligned_cols=278  Identities=9%  Similarity=0.034  Sum_probs=191.2

Q ss_pred             CeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCC-CeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCcee
Q psy17342         79 ELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS-PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVH  157 (401)
Q Consensus        79 ~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~  157 (401)
                      ++++++          .++.|.+||..+++....+...+.. .+..++|+|++..+++++..++.|.+||+.+++.....
T Consensus         3 ~~v~~~----------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~   72 (337)
T 1pby_B            3 YILAPA----------RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI   72 (337)
T ss_dssp             EEEEEE----------TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEEEcC----------CCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeE
Confidence            567777          7999999999987665544433222 58899999988667777777899999999887643221


Q ss_pred             eccccccCCCCcEEEEEEeecCCceEEEEEe------------CCCcEEEeeccCCCCCccccccccccccCCccceEEE
Q psy17342        158 RTPLSVMAHTHPVFCMSVIGTQNAHNLISIS------------NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL  225 (401)
Q Consensus       158 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (401)
                      .... ...|...+.+++|  +++++++++++            .++.|.+||+.... ......        ....+.++
T Consensus        73 ~~~~-~~~~~~~~~~~~~--s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~--------~~~~~~~~  140 (337)
T 1pby_B           73 DLST-PEERVKSLFGAAL--SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFE--------APRQITML  140 (337)
T ss_dssp             ECCB-TTEEEECTTCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEE--------CCSSCCCE
T ss_pred             EcCC-cccccccccceEE--CCCCCEEEEEecccccccccccccCceEEEEECCCCc-EEEEEe--------CCCCccee
Confidence            1100 0001225667888  89998888886            57999999987521 111111        12357788


Q ss_pred             EeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe-CCC------------
Q psy17342        226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS-YDW------------  292 (401)
Q Consensus       226 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~------------  292 (401)
                      +|+ ++++.++++  ++.|++||+...+  ....+..+.. ...+.|+|+      +..++..+ .++            
T Consensus       141 ~~s-~dg~~l~~~--~~~i~~~d~~~~~--~~~~~~~~~~-~~~~~~s~d------g~~l~~~~~~~~~~~~~~~~~~~~  208 (337)
T 1pby_B          141 AWA-RDGSKLYGL--GRDLHVMDPEAGT--LVEDKPIQSW-EAETYAQPD------VLAVWNQHESSGVMATPFYTARKD  208 (337)
T ss_dssp             EEC-TTSSCEEEE--SSSEEEEETTTTE--EEEEECSTTT-TTTTBCCCB------CCCCCCCCTTTTEEEEEEEEEBTT
T ss_pred             EEC-CCCCEEEEe--CCeEEEEECCCCc--Eeeeeecccc-CCCceeCCC------ccEEeeeccCCCceeeeeeccccc
Confidence            999 788888887  6889999997443  3444443321 123477777      34333322 222            


Q ss_pred             -----------eEEEEEeeCCCce-EEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCC
Q psy17342        293 -----------SVKLWNIKENKPV-HSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPA  360 (401)
Q Consensus       293 -----------~i~iwd~~~~~~~-~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  360 (401)
                                 .|.+||+.+++.. ..+..+...+.+++|+|+++ +++++  ++.|.+||+.+++....+    .....
T Consensus       209 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~--~~~v~~~d~~~~~~~~~~----~~~~~  281 (337)
T 1pby_B          209 IDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT-RAFGA--YNVLESFDLEKNASIKRV----PLPHS  281 (337)
T ss_dssp             SCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSS-EEEEE--ESEEEEEETTTTEEEEEE----ECSSC
T ss_pred             cccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCC-EEEEe--CCeEEEEECCCCcCccee----cCCCc
Confidence                       5789999888764 23445666788999999998 55555  789999999887654333    23456


Q ss_pred             eEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeeee
Q psy17342        361 LSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT  399 (401)
Q Consensus       361 v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~~  399 (401)
                      +.+++|+|+|++|++++.++.|++||+.+++  .+..++
T Consensus       282 ~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~--~~~~~~  318 (337)
T 1pby_B          282 YYSVNVSTDGSTVWLGGALGDLAAYDAETLE--KKGQVD  318 (337)
T ss_dssp             CCEEEECTTSCEEEEESBSSEEEEEETTTCC--EEEEEE
T ss_pred             eeeEEECCCCCEEEEEcCCCcEEEEECcCCc--EEEEEE
Confidence            7899999999999999999999999999874  444443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=2.8e-24  Score=183.60  Aligned_cols=233  Identities=12%  Similarity=0.027  Sum_probs=167.0

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcC-CCCCceEEEecCCCeeEEEEeCCCCceEEEEe--cC
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKF-KKTTPEFEFFCQSPVLSCCFAKFNPYLILGGT--YS  140 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~--~d  140 (401)
                      |...|.+++|+|++++|++++           ++.|.+||+.+ ++........+...+.+++|+|++ .+|++++  .+
T Consensus        40 ~~~~v~~~~~spdg~~l~~~~-----------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~  107 (297)
T 2ojh_A           40 TPELFEAPNWSPDGKYLLLNS-----------EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG-ALYAISDKVEF  107 (297)
T ss_dssp             ESSCCEEEEECTTSSEEEEEE-----------TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS-SEEEEEECTTT
T ss_pred             CCcceEeeEECCCCCEEEEEc-----------CCeEEEEeCCCCCCceEeccccccccccceEECCCC-CEEEEEEeCCC
Confidence            447799999999999999887           78999999997 654432222224678999999988 5666666  33


Q ss_pred             CeEEEEEC--CCCCCCceeeccccccCCCCcEEEEEEeecCCceEEE-EEeCCCcEEEeeccCCCCCccccccccccccC
Q psy17342        141 GQIVLWDT--RVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLI-SISNDGRLCSWSLEMLSSPQETRDLQYNNKQT  217 (401)
Q Consensus       141 g~v~iw~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  217 (401)
                      +...||.+  .++...       .+ .+...+..++|  +|++..|+ +++.++.+.+|+++......  ..     ...
T Consensus       108 ~~~~l~~~~~~~~~~~-------~~-~~~~~~~~~~~--spdg~~l~~~~~~~~~~~l~~~~~~~~~~--~~-----~~~  170 (297)
T 2ojh_A          108 GKSAIYLLPSTGGTPR-------LM-TKNLPSYWHGW--SPDGKSFTYCGIRDQVFDIYSMDIDSGVE--TR-----LTH  170 (297)
T ss_dssp             SSCEEEEEETTCCCCE-------EC-CSSSSEEEEEE--CTTSSEEEEEEEETTEEEEEEEETTTCCE--EE-----CCC
T ss_pred             CcceEEEEECCCCceE-------Ee-ecCCCccceEE--CCCCCEEEEEECCCCceEEEEEECCCCcc--eE-----ccc
Confidence            45555555  443321       11 22334888999  99999877 77889999999976422211  12     223


Q ss_pred             CccceEEEEeccCCCCeEEEEc-CCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC-----
Q psy17342        218 KNLAVLSLAFPQNDVNNFVVGC-EDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD-----  291 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d-----  291 (401)
                      +...+.+++|+ ++++.+++++ .++.+.+|++.... .....+..|...+.++.|+|+      +++|++++.+     
T Consensus       171 ~~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~s~d------g~~l~~~~~~~~~~~  242 (297)
T 2ojh_A          171 GEGRNDGPDYS-PDGRWIYFNSSRTGQMQIWRVRVDG-SSVERITDSAYGDWFPHPSPS------GDKVVFVSYDADVFD  242 (297)
T ss_dssp             SSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTS-SCEEECCCCSEEEEEEEECTT------SSEEEEEEEETTCCS
T ss_pred             CCCccccceEC-CCCCEEEEEecCCCCccEEEECCCC-CCcEEEecCCcccCCeEECCC------CCEEEEEEcCCCCCc
Confidence            56688999999 7888777665 58888898875322 245667778888999999998      7888877765     


Q ss_pred             ------CeEEEEEeeCCCce--EEEeecCCceEEEEECCCCCcEEEEEecC
Q psy17342        292 ------WSVKLWNIKENKPV--HSFNEFRDYVMDVQWSPINPALFATVEVA  334 (401)
Q Consensus       292 ------~~i~iwd~~~~~~~--~~~~~~~~~v~~v~~~~~~~~~l~~~~~d  334 (401)
                            +.|.+||+.+++..  ..+..|...+..++|+|+++ .|++++.+
T Consensus       243 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~  292 (297)
T 2ojh_A          243 HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGD-EFAYVRYF  292 (297)
T ss_dssp             CCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSS-EEEEEEEC
T ss_pred             ccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCC-EEEEEEec
Confidence                  56999999887663  34447788899999999998 45555544

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=2.1e-23  Score=200.80  Aligned_cols=327  Identities=7%  Similarity=-0.018  Sum_probs=202.4

Q ss_pred             chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeE
Q psy17342          2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELL   81 (401)
Q Consensus         2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   81 (401)
                      .|..-+.++++ +.||.+++||....+....+                        ..+. .....|.+++|||||++|+
T Consensus        23 ~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~------------------------~~~~-~~~~~v~~~~~SpDg~~l~   76 (723)
T 1xfd_A           23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLI------------------------EGKK-IESLRAIRYEISPDREYAL   76 (723)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE------------------------CTTT-TTTTTCSEEEECTTSSEEE
T ss_pred             EEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe------------------------cccc-ccccccceEEECCCCCEEE
Confidence            46666776665 67999999998766521111                        0000 0012489999999999999


Q ss_pred             EEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE--ecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeec
Q psy17342         82 LASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF--FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRT  159 (401)
Q Consensus        82 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~  159 (401)
                      +++... .....+.++.+.+||+.+++.. .+..  .+...+..++|+|+| +.|+.++ ++.|++|++.+++.....  
T Consensus        77 ~~~~~~-~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~SPdG-~~la~~~-~~~i~~~~~~~g~~~~~~--  150 (723)
T 1xfd_A           77 FSYNVE-PIYQHSYTGYYVLSKIPHGDPQ-SLDPPEVSNAKLQYAGWGPKG-QQLIFIF-ENNIYYCAHVGKQAIRVV--  150 (723)
T ss_dssp             EEESCC-CCSSSCCCSEEEEEESSSCCCE-ECCCTTCCSCCCSBCCBCSST-TCEEEEE-TTEEEEESSSSSCCEEEE--
T ss_pred             EEecCc-cceeecceeeEEEEECCCCceE-eccCCccccccccccEECCCC-CEEEEEE-CCeEEEEECCCCceEEEe--
Confidence            987211 0001112489999999977641 1111  123348899999988 5666665 489999999887653221  


Q ss_pred             cccccCCCC------------------cEEEEEEeecCCceEEEEEeCCC------------------------------
Q psy17342        160 PLSVMAHTH------------------PVFCMSVIGTQNAHNLISISNDG------------------------------  191 (401)
Q Consensus       160 ~~~~~~~~~------------------~v~~~~~~~~~~~~~l~s~~~dg------------------------------  191 (401)
                          ..+..                  .+.+++|  +|+++.|++++.|+                              
T Consensus       151 ----~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  224 (723)
T 1xfd_A          151 ----STGKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE  224 (723)
T ss_dssp             ----CCCBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC
T ss_pred             ----cCCCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC
Confidence                12222                  2378999  99999999987553                              


Q ss_pred             ----cEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC----CceEEEEeCCCCCCCceeeecC-
Q psy17342        192 ----RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE----DGNVYSACRHGNKAGNVECYEG-  262 (401)
Q Consensus       192 ----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----d~~i~~~~~~~~~~~~~~~~~~-  262 (401)
                          .|.+||+....... .+.... ....+...+..++|+ |+++.+++...    +..|++||+.+.+  ....+.. 
T Consensus       225 ~~~~~l~~~d~~~~~~~~-~l~~~~-~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~  299 (723)
T 1xfd_A          225 NPSISLHVIGLNGPTHDL-EMMPPD-DPRMREYYITMVKWA-TSTKVAVTWLNRAQNVSILTLCDATTGV--CTKKHEDE  299 (723)
T ss_dssp             CCEEEEEEEESSSSCCCE-ECCCCC-CGGGSSEEEEEEEES-SSSEEEEEEEETTSCEEEEEEEETTTCC--EEEEEEEE
T ss_pred             CCeeEEEEEECCCCceeE-EeeCCc-cCCCccceeEEEEEe-CCCeEEEEEEcCCCCeEEEEEEeCCCCc--ceEEEEec
Confidence                68889987532111 111100 011235678999999 78988876643    3579999987543  3333332 


Q ss_pred             CCCcee----eeecCccCCCCCCCcEEEE--EeCCC------eEEEEE-eeCCCc--eEEEeecCCceEE-EEECCCCCc
Q psy17342        263 HEGPVV----GLSSHRAQGHIDFSHLYLT--SSYDW------SVKLWN-IKENKP--VHSFNEFRDYVMD-VQWSPINPA  326 (401)
Q Consensus       263 ~~~~v~----~i~~~~~~~~~~~~~~l~s--~~~d~------~i~iwd-~~~~~~--~~~~~~~~~~v~~-v~~~~~~~~  326 (401)
                      +...+.    .++|+|+      ++.|+.  +..++      .|.+|| ...++.  ...+..+...+.. ++|+|+++.
T Consensus       300 ~~~~~~~~~~~~~~spd------g~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~  373 (723)
T 1xfd_A          300 SEAWLHRQNEEPVFSKD------GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNK  373 (723)
T ss_dssp             CSSCCCCCCCCCEECTT------SCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTE
T ss_pred             cCCEEeccCCCceEcCC------CCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCE
Confidence            334443    7899998      565554  45577      566677 333431  4455543444554 699999985


Q ss_pred             EEEEEecC--CEEEEEeCCCCCC--CcceEEeecCCCCeEEEEecCCCcEEEEEe
Q psy17342        327 LFATVEVA--GRVDLWNLNLDTE--VPATSAIVEGAPALSRVTWTPNGTQLCVGD  377 (401)
Q Consensus       327 ~l~~~~~d--~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  377 (401)
                      +++++..+  +.++||++.....  ...+.....+...+..++|+|||++|+...
T Consensus       374 l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          374 IYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             EEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             EEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence            54555555  7899999875432  111110001455688999999999887654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=3.1e-24  Score=206.51  Aligned_cols=291  Identities=8%  Similarity=0.022  Sum_probs=196.3

Q ss_pred             ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCC---CeeEEEEeCCCCceEEEEecC---
Q psy17342         67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS---PVLSCCFAKFNPYLILGGTYS---  140 (401)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~g~~d---  140 (401)
                      .+.+++|+|+|+++++ +          .|+.|++||+.+++....+ ..+..   .|.+++|||++ ++|++++.+   
T Consensus        18 ~~~~~~~spdg~~~~~-~----------~dg~i~~~d~~~g~~~~~~-~~~~~~~~~v~~~~~SpDg-~~l~~~~~~~~~   84 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-E----------QKGTVRLWNVETNTSTVLI-EGKKIESLRAIRYEISPDR-EYALFSYNVEPI   84 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-C----------SSSCEEEBCGGGCCCEEEE-CTTTTTTTTCSEEEECTTS-SEEEEEESCCCC
T ss_pred             cccccEEcCCCcEEEE-e----------CCCCEEEEECCCCcEEEEe-ccccccccccceEEECCCC-CEEEEEecCccc
Confidence            3678899999996655 5          5899999999987654322 22232   49999999988 566666553   


Q ss_pred             ------CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccccc
Q psy17342        141 ------GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNN  214 (401)
Q Consensus       141 ------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~  214 (401)
                            +.+.+||+.+++....    .....|...+..++|  +|+|+.|+.++. +.|.+||+.... ...........
T Consensus        85 ~~~~~~~~i~~~d~~~~~~~~l----~~~~~~~~~~~~~~~--SPdG~~la~~~~-~~i~~~~~~~g~-~~~~~~~~~~~  156 (723)
T 1xfd_A           85 YQHSYTGYYVLSKIPHGDPQSL----DPPEVSNAKLQYAGW--GPKGQQLIFIFE-NNIYYCAHVGKQ-AIRVVSTGKEG  156 (723)
T ss_dssp             SSSCCCSEEEEEESSSCCCEEC----CCTTCCSCCCSBCCB--CSSTTCEEEEET-TEEEEESSSSSC-CEEEECCCBTT
T ss_pred             eeecceeeEEEEECCCCceEec----cCCccccccccccEE--CCCCCEEEEEEC-CeEEEEECCCCc-eEEEecCCCCC
Confidence                  7899999988764211    112355566888999  999999999886 789999987632 22211110000


Q ss_pred             --ccCC---------ccceEEEEeccCCCCeEEEEcCCc----------------------------------eEEEEeC
Q psy17342        215 --KQTK---------NLAVLSLAFPQNDVNNFVVGCEDG----------------------------------NVYSACR  249 (401)
Q Consensus       215 --~~~~---------~~~v~~~~~~~~~~~~l~~~~~d~----------------------------------~i~~~~~  249 (401)
                        ..++         ...+.+++|+ |+++.|++++.++                                  .|++||+
T Consensus       157 ~~~~g~~~~v~~ee~~~~~~~~~~S-pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~  235 (723)
T 1xfd_A          157 VIYNGLSDWLYEEEILKTHIAHWWS-PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL  235 (723)
T ss_dssp             TEEEEECCHHHHHTTSSSSEEEEEC-TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred             ceECcccceeEEEEeccCcceEEEC-CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC
Confidence              0000         0134789999 8999998887543                                  7899998


Q ss_pred             CCCCCCceeeecCC------CCceeeeecCccCCCCCCCcEEEEEeC----CCeEEEEEeeCCCceEEEee-cCCceE--
Q psy17342        250 HGNKAGNVECYEGH------EGPVVGLSSHRAQGHIDFSHLYLTSSY----DWSVKLWNIKENKPVHSFNE-FRDYVM--  316 (401)
Q Consensus       250 ~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~-~~~~v~--  316 (401)
                      .+..  ....+..+      ...+.+++|+|+      ++++++.+.    +..|++||+.+++....+.. +...+.  
T Consensus       236 ~~~~--~~~~l~~~~~~~~~~~~~~~~~~SpD------g~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~  307 (723)
T 1xfd_A          236 NGPT--HDLEMMPPDDPRMREYYITMVKWATS------TKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQ  307 (723)
T ss_dssp             SSSC--CCEECCCCCCGGGSSEEEEEEEESSS------SEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred             CCCc--eeEEeeCCccCCCccceeEEEEEeCC------CeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEecc
Confidence            7543  22344433      677899999998      788876653    35799999998887666554 334443  


Q ss_pred             --EEEECCCCCcEEEE-EecCC------EEEEEeC-CCCCC--CcceEEeecCCCCeEE-EEecCCCcEEEEEecC---C
Q psy17342        317 --DVQWSPINPALFAT-VEVAG------RVDLWNL-NLDTE--VPATSAIVEGAPALSR-VTWTPNGTQLCVGDEK---G  380 (401)
Q Consensus       317 --~v~~~~~~~~~l~~-~~~d~------~i~iwd~-~~~~~--~~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~~d---g  380 (401)
                        .++|+|+|+.+++. +..++      .|.+||+ ..+..  ...+.   .+...+.. ++|+|||+.|+..+.+   +
T Consensus       308 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~---~~~~~~~~~~~~spdg~~l~~~~~~~~~~  384 (723)
T 1xfd_A          308 NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT---SGDWDVTKILAYDEKGNKIYFLSTEDLPR  384 (723)
T ss_dssp             CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC---CSSSCEEEEEEEETTTTEEEEEESSSCTT
T ss_pred             CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee---cCCeEEEeeeEEcCCCCEEEEEEcCCCCc
Confidence              78999999865554 55677      5777773 33330  22221   22334544 6999999999766554   7


Q ss_pred             cEEEEEeccC
Q psy17342        381 AITMFDVGEV  390 (401)
Q Consensus       381 ~v~iw~~~~~  390 (401)
                      .+++|++...
T Consensus       385 ~~~l~~~~~~  394 (723)
T 1xfd_A          385 RRQLYSANTV  394 (723)
T ss_dssp             CCEEEEECSS
T ss_pred             ceEEEEEeCC
Confidence            8999999754

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.92  E-value=2.5e-23  Score=207.46  Aligned_cols=293  Identities=9%  Similarity=-0.006  Sum_probs=208.3

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCe-------eEEEEeCCCCceEEE
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPV-------LSCCFAKFNPYLILG  136 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~l~~  136 (401)
                      |...+.+++|||||+.|+.++....    ...+..|++|++.+++.  .....|...+       .+++|+|++. ++++
T Consensus        51 ~~~~v~~~~~SPDG~~la~~s~~~~----~~~~~~i~~~d~~~g~~--~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~~  123 (1045)
T 1k32_A           51 NLGVINNARFFPDGRKIAIRVMRGS----SLNTADLYFYNGENGEI--KRITYFSGKSTGRRMFTDVAGFDPDGN-LIIS  123 (1045)
T ss_dssp             SSSEEEEEEECTTSSEEEEEEEEST----TCCEEEEEEEETTTTEE--EECCCCCEEEETTEECSEEEEECTTCC-EEEE
T ss_pred             CCCcccCeEECCCCCEEEEEEeecc----CCCCCeEEEEECCCCCe--EEcccCCCcccccccccccccCCCCCE-EEEE
Confidence            5678999999999999998873100    00235899999986542  2223455566       8999999985 8887


Q ss_pred             EecC------CeEEEEECCCCCCCceee-------------------------------------------ccccccCCC
Q psy17342        137 GTYS------GQIVLWDTRVQKKTPVHR-------------------------------------------TPLSVMAHT  167 (401)
Q Consensus       137 g~~d------g~v~iw~~~~~~~~~~~~-------------------------------------------~~~~~~~~~  167 (401)
                      ++.+      ..|.+|++.++.......                                           ....+..|.
T Consensus       124 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~  203 (1045)
T 1k32_A          124 TDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS  203 (1045)
T ss_dssp             ECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS
T ss_pred             ECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC
Confidence            7644      357778876543211000                                           001124577


Q ss_pred             CcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEE
Q psy17342        168 HPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSA  247 (401)
Q Consensus       168 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~  247 (401)
                      ..+.++.|  +++ ..+++++.|+.+.+|.+...+....  .+.     .+. .+...+|+ ++++.++.+ .++.|++|
T Consensus       204 ~~v~~~~~--s~d-~l~~~~~~dg~~~l~~~~~~g~~~~--~l~-----~~~-~~~~~~~S-pDG~~la~~-~~~~i~~~  270 (1045)
T 1k32_A          204 THVSSPVI--VGH-RIYFITDIDGFGQIYSTDLDGKDLR--KHT-----SFT-DYYPRHLN-TDGRRILFS-KGGSIYIF  270 (1045)
T ss_dssp             SCCEEEEE--ETT-EEEEEECTTSSCEEEEEETTSCSCE--ECC-----CCC-SSCEEEEE-ESSSCEEEE-ETTEEEEE
T ss_pred             CcccceEE--eCC-EEEEEEeccCceEEEEEeCCCCcce--Eec-----CCC-CcceeeEc-CCCCEEEEE-eCCEEEEe
Confidence            78888888  666 6777888899999998764222211  111     122 35667899 789988887 48999999


Q ss_pred             eCCCCCCCceeeecC-----------CCCceeeeecC-ccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCC-c
Q psy17342        248 CRHGNKAGNVECYEG-----------HEGPVVGLSSH-RAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRD-Y  314 (401)
Q Consensus       248 ~~~~~~~~~~~~~~~-----------~~~~v~~i~~~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~  314 (401)
                      +....   .+..+.+           |...+.+++|+ |+      ++.+++++ ++.|.+|++..++.. .+..|.. .
T Consensus       271 d~~~~---~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pd------G~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~  339 (1045)
T 1k32_A          271 NPDTE---KIEKIEIGDLESPEDRIISIPSKFAEDFSPLD------GDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIR  339 (1045)
T ss_dssp             CTTTC---CEEECCCCCCCBCCSEEEECGGGGEEEEEECG------GGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEE
T ss_pred             cCCce---EeeeeccCcccccccccccccccceeeecCCC------CCEEEEEE-cCEEEEEcCCCCceE-EccCCCcce
Confidence            98422   2334443           34578999999 98      78888887 889999999876543 4666777 8


Q ss_pred             eEEEEECCCCCcEEEEEecCCEEE-EEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccc
Q psy17342        315 VMDVQWSPINPALFATVEVAGRVD-LWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIA  393 (401)
Q Consensus       315 v~~v~~~~~~~~~l~~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~  393 (401)
                      +..++|+ +|+ .++.++.++.+. +||+..++...   . ..+...+..++|+|||++|++++.++.|++||+.+++..
T Consensus       340 ~~~~~~s-dg~-~l~~~s~~~~l~~~~d~~~~~~~~---l-~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~  413 (1045)
T 1k32_A          340 YVRRGGD-TKV-AFIHGTREGDFLGIYDYRTGKAEK---F-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT  413 (1045)
T ss_dssp             EEEECSS-SEE-EEEEEETTEEEEEEEETTTCCEEE---C-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEeeeEc-CCC-eEEEEECCCceEEEEECCCCCceE---e-cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceE
Confidence            9999999 987 577777788888 99988754321   1 255678999999999999999999999999999988543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=1.6e-22  Score=175.86  Aligned_cols=278  Identities=9%  Similarity=-0.002  Sum_probs=186.3

Q ss_pred             ccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEecc
Q psy17342          8 ESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHR   87 (401)
Q Consensus         8 ~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~   87 (401)
                      ..+++++.++.+++||....+.+..+                        .    .+...+ +++|+|+++++++++.  
T Consensus        11 ~~~v~~~~~~~v~~~d~~~~~~~~~~------------------------~----~~~~~~-~~~~s~dg~~l~~~~~--   59 (331)
T 3u4y_A           11 FGIVVEQHLRRISFFSTDTLEILNQI------------------------T----LGYDFV-DTAITSDCSNVVVTSD--   59 (331)
T ss_dssp             EEEEEEGGGTEEEEEETTTCCEEEEE------------------------E----CCCCEE-EEEECSSSCEEEEEES--
T ss_pred             EEEEEecCCCeEEEEeCcccceeeeE------------------------E----ccCCcc-eEEEcCCCCEEEEEeC--
Confidence            34678888999999998765511111                        0    112445 9999999998888882  


Q ss_pred             CCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC---eEEEEECCCCCCCceeecccccc
Q psy17342         88 NKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG---QIVLWDTRVQKKTPVHRTPLSVM  164 (401)
Q Consensus        88 ~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg---~v~iw~~~~~~~~~~~~~~~~~~  164 (401)
                             .++.|.+||..+++........+..+..+++|+|++ ++++++..++   .|.+||+.+++....       .
T Consensus        60 -------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~~-------~  124 (331)
T 3u4y_A           60 -------FCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFIST-------I  124 (331)
T ss_dssp             -------TTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEEE-------E
T ss_pred             -------CCCeEEEEECCCCceeEEecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEEE-------E
Confidence                   588999999998765222223334455559999988 5555555443   899999987764322       1


Q ss_pred             CCCCcEEEEEEeecCCceEEEEE-eCCCc-EEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeE-EEEcCC
Q psy17342        165 AHTHPVFCMSVIGTQNAHNLISI-SNDGR-LCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNF-VVGCED  241 (401)
Q Consensus       165 ~~~~~v~~~~~~~~~~~~~l~s~-~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d  241 (401)
                      .+.....+++|  +|++++++++ ..++. +.+|++...+...... ..   .......+..++|+ ++++++ +++..+
T Consensus       125 ~~~~~~~~~~~--spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~---~~~~~~~~~~~~~s-pdg~~l~v~~~~~  197 (331)
T 3u4y_A          125 PIPYDAVGIAI--SPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-QE---FISGGTRPFNITFT-PDGNFAFVANLIG  197 (331)
T ss_dssp             ECCTTEEEEEE--CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-EE---EECSSSSEEEEEEC-TTSSEEEEEETTT
T ss_pred             ECCCCccceEE--CCCCCEEEEEecCCCceEEEEEECCCCcEeecC-Cc---cccCCCCccceEEC-CCCCEEEEEeCCC
Confidence            23345689999  9999855554 55688 9999997532221110 00   11234457899999 788855 455578


Q ss_pred             ceEEEEeCCCCCC-CceeeecCCCCceeeeecCccCCCCCCCcEEEEE-eCCCeEEEEEeeCCCc--eEEEeec----CC
Q psy17342        242 GNVYSACRHGNKA-GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS-SYDWSVKLWNIKENKP--VHSFNEF----RD  313 (401)
Q Consensus       242 ~~i~~~~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~--~~~~~~~----~~  313 (401)
                      +.|++||+...+. ..+..+.. ...+..++|+|+      +++++.+ ..++.|.+||+.+++.  +..+..+    ..
T Consensus       198 ~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spd------g~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  270 (331)
T 3u4y_A          198 NSIGILETQNPENITLLNAVGT-NNLPGTIVVSRD------GSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPR  270 (331)
T ss_dssp             TEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTT------SSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCG
T ss_pred             CeEEEEECCCCcccceeeeccC-CCCCceEEECCC------CCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCC
Confidence            9999999874432 11555553 466789999998      6755544 4578899999988776  4433322    22


Q ss_pred             ---ceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342        314 ---YVMDVQWSPINPALFATVEVAGRVDLWNLNLD  345 (401)
Q Consensus       314 ---~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~  345 (401)
                         ....++|+|+++.+++++..++.|.+||+...
T Consensus       271 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          271 PLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             GGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             CcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence               23458999999866667777789999999864

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.91  E-value=1.1e-23  Score=183.46  Aligned_cols=276  Identities=7%  Similarity=-0.038  Sum_probs=189.5

Q ss_pred             ccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeecccccccc-ceEEEEecCCCCCeEEEEec
Q psy17342          8 ESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNR-NVTYMDWSTQHPELLLASYH   86 (401)
Q Consensus         8 ~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~   86 (401)
                      +.+++++.++.+++||....+.+..+                        ..   .+.. .+.+++|+|+++.++++.. 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~------------------------~~---~~~~~~~~~~~~s~dg~~l~v~~~-   53 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVI------------------------TI---ADAGPTPMVPMVAPGGRIAYATVN-   53 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEE------------------------EC---TTCTTCCCCEEECTTSSEEEEEET-
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEE------------------------Ec---CCCCCCccceEEcCCCCEEEEEeC-
Confidence            46889999999999997654411110                        00   1111 3778999999988877772 


Q ss_pred             cCCCCCCCCCcEEEEEeCcCCCCCceEEEecC----CCeeEEEEeCCCCceEEEEe------------cCCeEEEEECCC
Q psy17342         87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ----SPVLSCCFAKFNPYLILGGT------------YSGQIVLWDTRV  150 (401)
Q Consensus        87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~g~------------~dg~v~iw~~~~  150 (401)
                              .++.|.+||+.+++.+..+...+.    ..+..++|+|++ +.++++.            .++.|.+||+.+
T Consensus        54 --------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~  124 (337)
T 1pby_B           54 --------KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAET  124 (337)
T ss_dssp             --------TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTT
T ss_pred             --------CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCC
Confidence                    678999999988776554443321    267889999988 4555554            469999999987


Q ss_pred             CCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccC
Q psy17342        151 QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQN  230 (401)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  230 (401)
                      ++.....       .....+.+++|  +|++++++++  ++.|.+||+.... ........     ....   .+.|+ +
T Consensus       125 ~~~~~~~-------~~~~~~~~~~~--s~dg~~l~~~--~~~i~~~d~~~~~-~~~~~~~~-----~~~~---~~~~s-~  183 (337)
T 1pby_B          125 LSRRKAF-------EAPRQITMLAW--ARDGSKLYGL--GRDLHVMDPEAGT-LVEDKPIQ-----SWEA---ETYAQ-P  183 (337)
T ss_dssp             TEEEEEE-------ECCSSCCCEEE--CTTSSCEEEE--SSSEEEEETTTTE-EEEEECST-----TTTT---TTBCC-C
T ss_pred             CcEEEEE-------eCCCCcceeEE--CCCCCEEEEe--CCeEEEEECCCCc-Eeeeeecc-----ccCC---CceeC-C
Confidence            6543211       12345677888  9999988888  6899999997532 11111111     0011   22567 5


Q ss_pred             CCCeEEEEcCC-c-----------------------eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEE
Q psy17342        231 DVNNFVVGCED-G-----------------------NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL  286 (401)
Q Consensus       231 ~~~~l~~~~~d-~-----------------------~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~  286 (401)
                      ++..+++.+.. +                       .|.+||....+.. ...+..+...+.+++|+|+      +++++
T Consensus       184 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~d------g~~l~  256 (337)
T 1pby_B          184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPA------KTRAF  256 (337)
T ss_dssp             BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTT------SSEEE
T ss_pred             CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCC------CCEEE
Confidence            66655444322 2                       4688998755432 3344556677889999998      67887


Q ss_pred             EEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceE
Q psy17342        287 TSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATS  352 (401)
Q Consensus       287 s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  352 (401)
                      ++  ++.|.+||+.+++.+..+.. ...+.+++|+|+++ .+++++.++.|++||+.+++.+..+.
T Consensus       257 ~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~-~l~~~~~~~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          257 GA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGS-TVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSC-EEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             Ee--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCC-EEEEEcCCCcEEEEECcCCcEEEEEE
Confidence            77  79999999998888877765 45678999999998 56667889999999999887655443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.91  E-value=1.1e-21  Score=172.71  Aligned_cols=294  Identities=9%  Similarity=0.043  Sum_probs=186.9

Q ss_pred             cCCCCCeEEEEeccCCCCCCCCCcEEEEEeCc--CCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC----CeEEEEE
Q psy17342         74 STQHPELLLASYHRNKEAPNEPDGVCLIWNTK--FKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS----GQIVLWD  147 (401)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d----g~v~iw~  147 (401)
                      .+...++++++|.      .+.++.|.+|+++  +++....... +...+..++|+|++ ++|++++.+    +.|.+|+
T Consensus        10 ~~~~~~~~vg~y~------~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg-~~l~~~~~~~~~~~~v~~~~   81 (361)
T 3scy_A           10 TDSELTMLVGTYT------SGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADG-KFVYSVNEFSKDQAAVSAFA   81 (361)
T ss_dssp             GGGEEEEEEEECC------SSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTS-SEEEEEECCSSTTCEEEEEE
T ss_pred             CCCceEEEEEecc------CCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCC-CEEEEEEccCCCCCcEEEEE
Confidence            3445567778752      2357789999875  3443333333 56778889999988 566666654    7999999


Q ss_pred             CCCC--CCCceeeccccccCCCCcEEEEEEeecCCceEEEEEe-CCCcEEEeeccCCCCCccccccccc------cccCC
Q psy17342        148 TRVQ--KKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS-NDGRLCSWSLEMLSSPQETRDLQYN------NKQTK  218 (401)
Q Consensus       148 ~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~------~~~~~  218 (401)
                      ++..  .....    .....+......+++    ++.++++++ .++.+.+|++...+...........      ....+
T Consensus        82 ~~~~~g~~~~~----~~~~~~~~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~  153 (361)
T 3scy_A           82 FDKEKGTLHLL----NTQKTMGADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQT  153 (361)
T ss_dssp             EETTTTEEEEE----EEEECSSSCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCS
T ss_pred             EeCCCCcEEEe----eEeccCCCCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccC
Confidence            8764  22111    112234455666665    666666665 6889999999753322221111000      00112


Q ss_pred             ccceEEEEeccCCCCeEEEE-cCCceEEEEeCCCCCC----C-c------eeeecCCCCceeeeecCccCCCCCCCcEEE
Q psy17342        219 NLAVLSLAFPQNDVNNFVVG-CEDGNVYSACRHGNKA----G-N------VECYEGHEGPVVGLSSHRAQGHIDFSHLYL  286 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~----~-~------~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~  286 (401)
                      ...+.+++|+ |++++++++ ..++.|++|++.....    + .      ......+......++|+|+      +++++
T Consensus       154 ~~~~~~~~~s-pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spd------g~~l~  226 (361)
T 3scy_A          154 MPHLHCVRIT-PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSD------GKFAY  226 (361)
T ss_dssp             SCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTT------SSEEE
T ss_pred             CCcceEEEEC-CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCC------CCEEE
Confidence            3346889999 788866554 5588999998875432    1 1      1112234455788999998      67776


Q ss_pred             EEe-CCCeEEEEEeeCCCc--eEEEee---cCCceEEEEECCCCCcEEEEEec-CCEEEEEeCC--CCCCCcceEEeecC
Q psy17342        287 TSS-YDWSVKLWNIKENKP--VHSFNE---FRDYVMDVQWSPINPALFATVEV-AGRVDLWNLN--LDTEVPATSAIVEG  357 (401)
Q Consensus       287 s~~-~d~~i~iwd~~~~~~--~~~~~~---~~~~v~~v~~~~~~~~~l~~~~~-d~~i~iwd~~--~~~~~~~~~~~~~~  357 (401)
                      +++ .++.|.+||+.+++.  +..+..   +......++|+|+|+.++++... ++.|.+|++.  +++. ..... ...
T Consensus       227 v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~-~~~~~-~~~  304 (361)
T 3scy_A          227 LINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL-TKVGY-QLT  304 (361)
T ss_dssp             EEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE-EEEEE-EEC
T ss_pred             EEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE-EEeeE-ecC
Confidence            666 689999999987654  222322   23456799999999854455555 5899999996  3332 12221 122


Q ss_pred             CCCeEEEEecCCCcEEEEEe-cCCcEEEEEec--cCcc
Q psy17342        358 APALSRVTWTPNGTQLCVGD-EKGAITMFDVG--EVGI  392 (401)
Q Consensus       358 ~~~v~~~~~s~~g~~l~~~~-~dg~v~iw~~~--~~~~  392 (401)
                      ...+..++|+|+|++|++++ .++.|.+|++.  ++++
T Consensus       305 g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~  342 (361)
T 3scy_A          305 GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL  342 (361)
T ss_dssp             SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE
Confidence            45678999999999988887 67889997665  5543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=7.6e-23  Score=203.98  Aligned_cols=283  Identities=11%  Similarity=0.034  Sum_probs=206.5

Q ss_pred             ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE----------ecCCCeeEEEEe-CCCCceEE
Q psy17342         67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF----------FCQSPVLSCCFA-KFNPYLIL  135 (401)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~----------~~~~~v~~~~~~-~~~~~~l~  135 (401)
                      .+...+|+|+|+.|+.+.           ++.|.+|++.... +..+..          .+...+.+++|+ |++ ..|+
T Consensus       246 ~~~~~~~SpDG~~la~~~-----------~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la  312 (1045)
T 1k32_A          246 DYYPRHLNTDGRRILFSK-----------GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIA  312 (1045)
T ss_dssp             SSCEEEEEESSSCEEEEE-----------TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEE
T ss_pred             CcceeeEcCCCCEEEEEe-----------CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCC-CEEE
Confidence            356679999999999887           8999999984322 211110          123368999999 988 5666


Q ss_pred             EEecCCeEEEEECCCCCCCceeeccccccCCCC-cEEEEEEeecCCceEEEEEeCCCcEE-EeeccCCCCCccccccccc
Q psy17342        136 GGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTH-PVFCMSVIGTQNAHNLISISNDGRLC-SWSLEMLSSPQETRDLQYN  213 (401)
Q Consensus       136 ~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~dg~i~-~wd~~~~~~~~~~~~~~~~  213 (401)
                      .++ ++.|.+|+...+...       .+..|.. .+..++|  + ++..|++++.++.+. +|++... ...   .    
T Consensus       313 ~~~-~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~--s-dg~~l~~~s~~~~l~~~~d~~~~-~~~---~----  373 (1045)
T 1k32_A          313 FVS-RGQAFIQDVSGTYVL-------KVPEPLRIRYVRRGG--D-TKVAFIHGTREGDFLGIYDYRTG-KAE---K----  373 (1045)
T ss_dssp             EEE-TTEEEEECTTSSBEE-------ECSCCSCEEEEEECS--S-SEEEEEEEETTEEEEEEEETTTC-CEE---E----
T ss_pred             EEE-cCEEEEEcCCCCceE-------EccCCCcceEEeeeE--c-CCCeEEEEECCCceEEEEECCCC-Cce---E----
Confidence            665 889999998876532       2356677 8899999  8 999999999888888 8887642 111   1    


Q ss_pred             cccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC-
Q psy17342        214 NKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW-  292 (401)
Q Consensus       214 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~-  292 (401)
                       ..++...+..++|+ |+++.|++++.++.|++||+....  ......+|...+.+++|+|+      +++|++++.++ 
T Consensus       374 -l~~~~~~~~~~~~S-pDG~~la~~~~~~~v~~~d~~tg~--~~~~~~~~~~~v~~~~~SpD------G~~la~~~~~~~  443 (1045)
T 1k32_A          374 -FEENLGNVFAMGVD-RNGKFAVVANDRFEIMTVDLETGK--PTVIERSREAMITDFTISDN------SRFIAYGFPLKH  443 (1045)
T ss_dssp             -CCCCCCSEEEEEEC-TTSSEEEEEETTSEEEEEETTTCC--EEEEEECSSSCCCCEEECTT------SCEEEEEEEECS
T ss_pred             -ecCCccceeeeEEC-CCCCEEEEECCCCeEEEEECCCCc--eEEeccCCCCCccceEECCC------CCeEEEEecCcc
Confidence             11366789999999 899999999999999999997443  44555579999999999999      78888877644 


Q ss_pred             ---------eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC----------------
Q psy17342        293 ---------SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE----------------  347 (401)
Q Consensus       293 ---------~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------------  347 (401)
                               .|++||+.+++ +..+..|...+..++|+|+|+ .|+.++.++...+|+......                
T Consensus       444 ~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~-~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (1045)
T 1k32_A          444 GETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPG  521 (1045)
T ss_dssp             STTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC-EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTT
T ss_pred             ccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCC-EEEEEecccCCcCcchhccccccccCceeEEEEeCCC
Confidence                     89999998876 667777888899999999998 677777776666665432111                


Q ss_pred             --C----------------------cceEEeecCCCCeEEEEecCCCcEEEE-------------EecCCcEEEEEeccC
Q psy17342        348 --V----------------------PATSAIVEGAPALSRVTWTPNGTQLCV-------------GDEKGAITMFDVGEV  390 (401)
Q Consensus       348 --~----------------------~~~~~~~~~~~~v~~~~~s~~g~~l~~-------------~~~dg~v~iw~~~~~  390 (401)
                        .                      ........+...+..++++|||.++++             ......|++||+.++
T Consensus       522 ~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~  601 (1045)
T 1k32_A          522 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR  601 (1045)
T ss_dssp             CCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC
T ss_pred             CCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCC
Confidence              0                      011111123466889999999988875             122456888888887


Q ss_pred             ccc
Q psy17342        391 GIA  393 (401)
Q Consensus       391 ~~~  393 (401)
                      +.+
T Consensus       602 ~~~  604 (1045)
T 1k32_A          602 KVT  604 (1045)
T ss_dssp             CEE
T ss_pred             cEE
Confidence            644

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=1.6e-22  Score=177.16  Aligned_cols=282  Identities=11%  Similarity=0.052  Sum_probs=181.6

Q ss_pred             EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECC
Q psy17342         70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTR  149 (401)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~  149 (401)
                      .+++++++..+++++          .++.|.+||..+++....+..+....+..++|+|++..+++++..++.|.+||+.
T Consensus         4 g~~~~~~~~~~v~~~----------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~   73 (349)
T 1jmx_B            4 GPALKAGHEYMIVTN----------YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD   73 (349)
T ss_dssp             CCCCCTTCEEEEEEE----------TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             cccccCCCEEEEEeC----------CCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC
Confidence            356788888888888          7999999999987665544433222688999999885566677778999999998


Q ss_pred             CCCCCceeeccccccCC-----CCcEEEEEEeecCCceEEEEEeCC------------CcEEEeeccCCCCCcccccccc
Q psy17342        150 VQKKTPVHRTPLSVMAH-----THPVFCMSVIGTQNAHNLISISND------------GRLCSWSLEMLSSPQETRDLQY  212 (401)
Q Consensus       150 ~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~d------------g~i~~wd~~~~~~~~~~~~~~~  212 (401)
                      +++......    . .+     ...+..++|  +|+++++++++.+            +.|.+||+.+..... ..... 
T Consensus        74 t~~~~~~~~----~-~~~~~~~~~~~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~-  144 (349)
T 1jmx_B           74 TCKNTFHAN----L-SSVPGEVGRSMYSFAI--SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK-PVRTF-  144 (349)
T ss_dssp             TTEEEEEEE----S-CCSTTEEEECSSCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC-CSEEE-
T ss_pred             CCcEEEEEE----c-ccccccccccccceEE--CCCCCEEEEEcccccccccccccCCCeEEEEECCCccccc-eeeec-
Confidence            765432211    1 11     223678888  9999999998865            899999997522111 11111 


Q ss_pred             ccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCC------------------------cee
Q psy17342        213 NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEG------------------------PVV  268 (401)
Q Consensus       213 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~------------------------~v~  268 (401)
                          .+...+.+++|+ ++++ +++++.  .|++||....+  ....+..+..                        ...
T Consensus       145 ----~~~~~~~~~~~s-~dg~-l~~~~~--~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (349)
T 1jmx_B          145 ----PMPRQVYLMRAA-DDGS-LYVAGP--DIYKMDVKTGK--YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY  214 (349)
T ss_dssp             ----ECCSSCCCEEEC-TTSC-EEEESS--SEEEECTTTCC--EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred             ----cCCCcccceeEC-CCCc-EEEccC--cEEEEeCCCCc--eeccccccccCCccccCccceeeecCCCcceeEEeee
Confidence                123358889999 7888 555544  49999987433  3334332210                        122


Q ss_pred             eeecCccCCCC----CC-CcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECC-CCCcEEEEEecCCEEEEEeC
Q psy17342        269 GLSSHRAQGHI----DF-SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSP-INPALFATVEVAGRVDLWNL  342 (401)
Q Consensus       269 ~i~~~~~~~~~----~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~l~~~~~d~~i~iwd~  342 (401)
                      .+++.++....    .. ..++.....++.+++|++         ..+...+.+++|+| +++ +++++  ++.|.+||+
T Consensus       215 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~-~l~~~--~~~v~~~d~  282 (349)
T 1jmx_B          215 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF---------ADLTELYFTGLRSPKDPN-QIYGV--LNRLAKYDL  282 (349)
T ss_dssp             EEEEC-------CCCEEEEEEEEEETTTCCEEEEEE---------EECSSCEEEEEECSSCTT-EEEEE--ESEEEEEET
T ss_pred             eeeecCCCcCCccccccceeEEEEeccCCcEEeccc---------ccCCCcceeeEecCCCCC-EEEEE--cCeEEEEEC
Confidence            23333221000    00 001112222344444443         22456788999999 997 55655  889999999


Q ss_pred             CCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeee
Q psy17342        343 NLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFI  398 (401)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~  398 (401)
                      .+++....+.    ....+.+++|+|+|++|++++.++.|++||+.++  +.++.+
T Consensus       283 ~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~--~~~~~~  332 (349)
T 1jmx_B          283 KQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL--EKVKNI  332 (349)
T ss_dssp             TTTEEEEEEE----CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT--EEEEEE
T ss_pred             ccCeEEEEEc----CCCCccceEECCCCCEEEEecCCCeEEEEecccc--ceeeee
Confidence            9876444332    2345778999999999998888999999999887  445444

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=4.1e-23  Score=198.12  Aligned_cols=287  Identities=12%  Similarity=0.081  Sum_probs=189.6

Q ss_pred             eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC-ceEEEecC-----------------CCeeEEEEeCC
Q psy17342         68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT-PEFEFFCQ-----------------SPVLSCCFAKF  129 (401)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~-~~~~~~~~-----------------~~v~~~~~~~~  129 (401)
                      +..+.|.  +..+++.+          .++ | +||+.+++.+ ..+ +.+.                 ..|.+++|+|+
T Consensus        28 ~~~~~w~--g~~~~~~~----------~~~-i-~~d~~tg~~~~~~l-~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd   92 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIE----------GDD-L-VFNKANGKSAQTTR-FSAADLNALMPEGCKFQTTDAFPSFRTLDAGR   92 (706)
T ss_dssp             CTTCEEE--TTEEEEEE----------TTE-E-EEEC-------CEE-EEHHHHHTTC-----------CCCEEEEETTT
T ss_pred             CCCCcCc--CCeEEEEe----------CCc-E-EEECCCCcEeeEEe-echhHhhhhccchhccccccccCceeEEECCC
Confidence            5567788  66777777          577 8 9999988763 333 3322                 56999999998


Q ss_pred             CCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccC-----CCCC
Q psy17342        130 NPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEM-----LSSP  204 (401)
Q Consensus       130 ~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~-----~~~~  204 (401)
                       ..++++  .++.|++||+.+++...       +..+...+.+++|  +|+++.|+++ .++.|.+|++..     .. .
T Consensus        93 -~~~~~~--~~~~i~~~d~~~~~~~~-------l~~~~~~~~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~-~  158 (706)
T 2z3z_A           93 -GLVVLF--TQGGLVGFDMLARKVTY-------LFDTNEETASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSR-A  158 (706)
T ss_dssp             -TEEEEE--ETTEEEEEETTTTEEEE-------EECCTTCCTTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCC-C
T ss_pred             -CeEEEE--ECCEEEEEECCCCceEE-------ccCCcccccCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCC-c
Confidence             455555  36999999998765321       2345667888999  9999999985 679999999975     22 1


Q ss_pred             ccccccccc-------cccCCccceEEEEeccCCCCeEEEEc---------------------------------CCceE
Q psy17342        205 QETRDLQYN-------NKQTKNLAVLSLAFPQNDVNNFVVGC---------------------------------EDGNV  244 (401)
Q Consensus       205 ~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~~~~---------------------------------~d~~i  244 (401)
                      .........       ....+...+.+++|+ |+++.|++++                                 .+..|
T Consensus       159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S-pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWS-PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             EESCSCCBTTEEESSCCGGGCTTCCCSEEEC-TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             EEeccCCCCCeEcccchhhhhcCCCceEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            111111000       000011125889999 8999999887                                 45679


Q ss_pred             EEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC-----eEEEEEeeCCCceEEEe-e-cCC---c
Q psy17342        245 YSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW-----SVKLWNIKENKPVHSFN-E-FRD---Y  314 (401)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~-~-~~~---~  314 (401)
                      ++||+.+.....+.....|...+.+++|+|+      ++.|++++.++     .|++||+.+++....+. . +..   .
T Consensus       238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd------g~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~  311 (706)
T 2z3z_A          238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPD------ENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP  311 (706)
T ss_dssp             EEEETTTTEEEECCCCSCTTCEEEEEEECTT------SSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred             EEEECCCCceEeeccCCCCceeEeeEEEECC------CCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence            9999975432222222256778999999999      78888877665     89999999884444433 2 222   2


Q ss_pred             eEEEEECC--CCCcEEEEEecCCEEEEEeCC-CCCCCcceEEeecCCCCeEE-EEecCCCcEEEEEec-CC----cEEEE
Q psy17342        315 VMDVQWSP--INPALFATVEVAGRVDLWNLN-LDTEVPATSAIVEGAPALSR-VTWTPNGTQLCVGDE-KG----AITMF  385 (401)
Q Consensus       315 v~~v~~~~--~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~~-dg----~v~iw  385 (401)
                      +.+++|+|  +|+ ++++++.|+.++||++. ++.....   ...+...+.. ++|+|+|+.|+.++. ++    .|+.|
T Consensus       312 ~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~---l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  387 (706)
T 2z3z_A          312 LHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQ---VTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI  387 (706)
T ss_dssp             CSCCEECTTCSSE-EEEEECTTSSCEEEEEETTSCEEEE---CCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred             cCCceeecCCCCE-EEEEEccCCccEEEEEECCCCEEEe---cCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence            46789999  997 78888899999999876 3332222   2344556766 799999988766554 44    56666


Q ss_pred             EeccCccce
Q psy17342        386 DVGEVGIAC  394 (401)
Q Consensus       386 ~~~~~~~~~  394 (401)
                      |+.+++.++
T Consensus       388 d~~~~~~~~  396 (706)
T 2z3z_A          388 DIKGGKTKD  396 (706)
T ss_dssp             ETTCCCCEE
T ss_pred             EcCCCCcee
Confidence            666654333

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.91  E-value=4.3e-23  Score=193.41  Aligned_cols=270  Identities=11%  Similarity=0.050  Sum_probs=191.3

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecC-CCeeEEEEeCCCCceEEEEec---C
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKFNPYLILGGTY---S  140 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~g~~---d  140 (401)
                      ..+|.+++|+|||+.|+.++.         .+++++||++++++..  ....+. ..+.+++|+|+  +++++++.   +
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~---------~~g~~~lw~~~~g~~~--~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~   87 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGF---------SEGSVNAYLYDGGETV--KLNREPINSVLDPHYGVG--RVILVRDVSKGA   87 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEE---------ETTEEEEEEEETTEEE--ECCSSCCSEECEECTTCS--EEEEEEECSTTS
T ss_pred             ccchheeecCCCCCeEEEEEc---------cCCceeEEEEcCCCcE--eeecccccccccccCCCC--eEEEEeccCCCC
Confidence            357999999999999999883         4899999998654322  222334 57999999996  67777664   4


Q ss_pred             CeEEEEECCC--CCCCceeeccccccCCCCcEEEEEEeecCCce--EEEEEeCCCcEEEeeccCCCCCcccccccccccc
Q psy17342        141 GQIVLWDTRV--QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAH--NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQ  216 (401)
Q Consensus       141 g~v~iw~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  216 (401)
                      ....+|.++.  ......      +.. ...+...+|  +++++  .+++++. +.+.+||+.+.. ..   .+..    
T Consensus        88 ~~~~l~~~~~~~~g~~~~------l~~-~~~~~~~~~--s~dg~~~~~~s~~~-~~~~l~d~~~g~-~~---~l~~----  149 (582)
T 3o4h_A           88 EQHALFKVNTSRPGEEQR------LEA-VKPMRILSG--VDTGEAVVFTGATE-DRVALYALDGGG-LR---ELAR----  149 (582)
T ss_dssp             CCEEEEEEETTSTTCCEE------CTT-SCSBEEEEE--EECSSCEEEEEECS-SCEEEEEEETTE-EE---EEEE----
T ss_pred             cceEEEEEeccCCCcccc------ccC-CCCceeeee--CCCCCeEEEEecCC-CCceEEEccCCc-EE---Eeec----
Confidence            5566766544  222111      111 112335566  45553  4555444 455599987521 11   1111    


Q ss_pred             CCccceEEEEeccCCCCeEEEEcCC----ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC
Q psy17342        217 TKNLAVLSLAFPQNDVNNFVVGCED----GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW  292 (401)
Q Consensus       217 ~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~  292 (401)
                       +..  .+++|+ |+++.+++++.+    +.|++||+.+..   ...+..|.+.+.+++|+|+      ++.|+++..++
T Consensus       150 -~~~--~~~~~s-pDG~~la~~~~~~~~~~~i~~~d~~~g~---~~~l~~~~~~~~~~~~SpD------G~~l~~~~~~~  216 (582)
T 3o4h_A          150 -LPG--FGFVSD-IRGDLIAGLGFFGGGRVSLFTSNLSSGG---LRVFDSGEGSFSSASISPG------MKVTAGLETAR  216 (582)
T ss_dssp             -ESS--CEEEEE-EETTEEEEEEEEETTEEEEEEEETTTCC---CEEECCSSCEEEEEEECTT------SCEEEEEECSS
T ss_pred             -CCC--ceEEEC-CCCCEEEEEEEcCCCCeEEEEEcCCCCC---ceEeecCCCccccceECCC------CCEEEEccCCC
Confidence             111  788999 899999988776    789999987543   3466788899999999999      78999888888


Q ss_pred             --eEEEEEeeCCCceEEEeecCCceEEEE--------ECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeE
Q psy17342        293 --SVKLWNIKENKPVHSFNEFRDYVMDVQ--------WSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALS  362 (401)
Q Consensus       293 --~i~iwd~~~~~~~~~~~~~~~~v~~v~--------~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~  362 (401)
                        .|++||+.+++.. .+..|...+..++        |+|+| .++++++.|+.+++|++  ++...      .....+.
T Consensus       217 ~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~~~------~~~~~v~  286 (582)
T 3o4h_A          217 EARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GERVE------APQGNHG  286 (582)
T ss_dssp             CEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEEEC------CCSSEEE
T ss_pred             eeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCeec------cCCCceE
Confidence              8999999988877 6777777777777        99999 58999999999999999  43222      1235688


Q ss_pred             EEEecCCCcEEEEEecCCc---EEEEEecc
Q psy17342        363 RVTWTPNGTQLCVGDEKGA---ITMFDVGE  389 (401)
Q Consensus       363 ~~~~s~~g~~l~~~~~dg~---v~iw~~~~  389 (401)
                      +++|+ +|+++++++.+..   +++|+..+
T Consensus       287 ~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          287 RVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             EEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             EEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence            99999 9999998887754   55565543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=3.2e-22  Score=179.65  Aligned_cols=269  Identities=9%  Similarity=0.035  Sum_probs=178.1

Q ss_pred             cEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCC--------Ccee-eccccccCCC
Q psy17342         97 GVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKK--------TPVH-RTPLSVMAHT  167 (401)
Q Consensus        97 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~--------~~~~-~~~~~~~~~~  167 (401)
                      +.+++|+... . .      ....++.+++++++ .++++++.++ +++|+......        .... ..+.....+.
T Consensus        23 ~~vri~~~~~-~-~------~~~~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (434)
T 2oit_A           23 KKVRIFDSPE-E-L------PKERSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMK   92 (434)
T ss_dssp             CEEECSCCCS-S-C------CCSCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCS
T ss_pred             eeEEecCCcc-c-c------CCCCccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCC
Confidence            5678876531 1 1      13468899999976 6788887777 89987642211        0000 0001112456


Q ss_pred             CcEEEEEEeecCCceEEE----EEeCCCcEEEeeccCCCC----C-ccccccccccccCCccceEEEEeccCCCCeEEEE
Q psy17342        168 HPVFCMSVIGTQNAHNLI----SISNDGRLCSWSLEMLSS----P-QETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVG  238 (401)
Q Consensus       168 ~~v~~~~~~~~~~~~~l~----s~~~dg~i~~wd~~~~~~----~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  238 (401)
                      ..|.+++|  ++++.+|+    +++.|+.|++||++....    . .....+..  ..+|...|.+++|+|.++.+|+++
T Consensus        93 ~~v~~l~~--spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~h~~~V~~v~~~p~~~~~las~  168 (434)
T 2oit_A           93 FPIHHLAL--SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKL--LKDAGGMVIDMKWNPTVPSMVAVC  168 (434)
T ss_dssp             SCEEEEEE--CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEEC--CCSGGGSEEEEEECSSCTTEEEEE
T ss_pred             CcccEEEE--cCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeec--cCCCCCceEEEEECCCCCCEEEEE
Confidence            78999999  99999999    788899999999875310    1 11111111  445889999999995458899999


Q ss_pred             cCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC------
Q psy17342        239 CEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR------  312 (401)
Q Consensus       239 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------  312 (401)
                      +.||.|++||++..  .......+|...|.+++|+|+      +++|++|+.|++|++||.+ ++....+..|.      
T Consensus       169 s~Dg~v~iwD~~~~--~~~~~~~~~~~~v~~v~wspd------g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~  239 (434)
T 2oit_A          169 LADGSIAVLQVTET--VKVCATLPSTVAVTSVCWSPK------GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDH  239 (434)
T ss_dssp             ETTSCEEEEEESSS--EEEEEEECGGGCEEEEEECTT------SSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTS
T ss_pred             ECCCeEEEEEcCCC--cceeeccCCCCceeEEEEcCC------CCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCC
Confidence            99999999999854  334455678999999999999      7999999999999999998 66666665432      


Q ss_pred             -CceEEEEECCCCCcEEEEEecCC------EEEEEeCCCCCCC--cceEEee-------cCCCCeEEEEecCCCcEEEEE
Q psy17342        313 -DYVMDVQWSPINPALFATVEVAG------RVDLWNLNLDTEV--PATSAIV-------EGAPALSRVTWTPNGTQLCVG  376 (401)
Q Consensus       313 -~~v~~v~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~--~~~~~~~-------~~~~~v~~~~~s~~g~~l~~~  376 (401)
                       ..|.+++|++++..+++....||      .+++|+++..+..  ..+....       ....+-..+.+-++.++++++
T Consensus       240 ~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~  319 (434)
T 2oit_A          240 PVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAA  319 (434)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEE
T ss_pred             ceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEe
Confidence             37999999998863334444443      3899999865321  1221111       111222233333666666555


Q ss_pred             ec-CCcEEEEEec
Q psy17342        377 DE-KGAITMFDVG  388 (401)
Q Consensus       377 ~~-dg~v~iw~~~  388 (401)
                      +. .+.|.|....
T Consensus       320 s~~s~dv~vl~~~  332 (434)
T 2oit_A          320 SAASTEVSILARQ  332 (434)
T ss_dssp             ETTCSBCEEEEEC
T ss_pred             cCCCCceeEEEec
Confidence            43 4446666543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=5e-21  Score=167.58  Aligned_cols=255  Identities=9%  Similarity=0.102  Sum_probs=167.3

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-EecCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-FFCQSPVLSCCFAKFNPYLILGGTYSGQIV  144 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~  144 (401)
                      ..+..++|+|+|+ |++++..       ..++.|.+|++.++....... ..+...+..++|+|++..+++++..++.|.
T Consensus        40 ~~p~~~a~spdg~-l~~~~~~-------~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~  111 (347)
T 3hfq_A           40 QNPTYLALSAKDC-LYSVDKE-------DDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAE  111 (347)
T ss_dssp             SCCCCEEECTTCE-EEEEEEE-------TTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCcceEEEccCCe-EEEEEec-------CCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEE
Confidence            5577899999998 7776620       026899999997654322222 235678899999998844444444789999


Q ss_pred             EEECCCC-CCCceeecccccc-------CCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccccccc
Q psy17342        145 LWDTRVQ-KKTPVHRTPLSVM-------AHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQ  216 (401)
Q Consensus       145 iw~~~~~-~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  216 (401)
                      +|++... .......  ....       .+...+.+++|  +|+++.+++...++.|.+|++...+.........    .
T Consensus       112 v~~~~~~g~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~--spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~----~  183 (347)
T 3hfq_A          112 VMKIAADGALTLTDT--VQHSGHGPRPEQDGSHIHYTDL--TPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT----M  183 (347)
T ss_dssp             EEEECTTSCEEEEEE--EECCCCCSSTTCSSCCEEEEEE--CTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE----C
T ss_pred             EEEeCCCCCeeecce--eecCCCCCCccccCCCceEEEE--CCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE----c
Confidence            9999643 2211111  1111       12345889999  8999966666778899999998322222111111    1


Q ss_pred             CCccceEEEEeccCCCCeEEE-EcCCceEEEEeCCCCCCC--ceeeecCCC------CceeeeecCccCCCCCCCcEE-E
Q psy17342        217 TKNLAVLSLAFPQNDVNNFVV-GCEDGNVYSACRHGNKAG--NVECYEGHE------GPVVGLSSHRAQGHIDFSHLY-L  286 (401)
Q Consensus       217 ~~~~~v~~~~~~~~~~~~l~~-~~~d~~i~~~~~~~~~~~--~~~~~~~~~------~~v~~i~~~~~~~~~~~~~~l-~  286 (401)
                      .....+..++|+ |+++++++ +..++.|.+|++......  .+..+....      ..+..++|+|+      +++| +
T Consensus       184 ~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd------G~~l~v  256 (347)
T 3hfq_A          184 EAGFGPRHLVFS-PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD------GHFLYV  256 (347)
T ss_dssp             CTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT------SCEEEE
T ss_pred             CCCCCCceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC------CCEEEE
Confidence            123357789999 78886555 567889999998742222  122222222      35788999999      6655 6


Q ss_pred             EEeCCCeEEEEEeeCC---CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCC
Q psy17342        287 TSSYDWSVKLWNIKEN---KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       287 s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~  343 (401)
                      +...++.|.+|++...   +.+..+..+...+..++|+|+++.++++...++.|.+|++.
T Consensus       257 ~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          257 SNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            6667899999999732   44455555566788999999998544444456999999554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=9.6e-23  Score=183.02  Aligned_cols=212  Identities=13%  Similarity=0.044  Sum_probs=155.6

Q ss_pred             CcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCC-------ccccccccccccCCccceEEEEeccCCCCeEE----
Q psy17342        168 HPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSP-------QETRDLQYNNKQTKNLAVLSLAFPQNDVNNFV----  236 (401)
Q Consensus       168 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~----  236 (401)
                      ..+..+++  ++++.++++++.++ +++|+.......       .............+...|.+++|+ +++++|+    
T Consensus        37 ~~~n~lav--s~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-pdg~~lav~~~  112 (434)
T 2oit_A           37 ERSSLLAV--SNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALS-CDNLTLSACMM  112 (434)
T ss_dssp             SCCBCEEE--ETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEEC-TTSCEEEEEEE
T ss_pred             CCccEEEE--ecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEc-CCCCEEEEEEe
Confidence            35678888  88889999999988 888876431110       000000000012245679999999 7899998    


Q ss_pred             EEcCCceEEEEeCCCC-----CC-C---ceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEE
Q psy17342        237 VGCEDGNVYSACRHGN-----KA-G---NVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHS  307 (401)
Q Consensus       237 ~~~~d~~i~~~~~~~~-----~~-~---~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  307 (401)
                      +|+.|+.|++||+...     .. +   .+..+.+|...|.+++|+|..     +.+|++++.|++|++||++++..+..
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~-----~~~las~s~Dg~v~iwD~~~~~~~~~  187 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTV-----PSMVAVCLADGSIAVLQVTETVKVCA  187 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSC-----TTEEEEEETTSCEEEEEESSSEEEEE
T ss_pred             ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCC-----CCEEEEEECCCeEEEEEcCCCcceee
Confidence            7889999999997642     11 1   145567899999999999975     68999999999999999998877767


Q ss_pred             EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee----cCCCCeEEEEecCCCcEEEEE-ecCCc-
Q psy17342        308 FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV----EGAPALSRVTWTPNGTQLCVG-DEKGA-  381 (401)
Q Consensus       308 ~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~s~~g~~l~~~-~~dg~-  381 (401)
                      ...|...|.+++|+|+|. +|++|+.||.|++||++ ++....+....    .|...+.+++|++++.++++. ..+|. 
T Consensus       188 ~~~~~~~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~  265 (434)
T 2oit_A          188 TLPSTVAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL  265 (434)
T ss_dssp             EECGGGCEEEEEECTTSS-CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred             ccCCCCceeEEEEcCCCC-EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence            777889999999999997 78999999999999998 33322221111    112378999999999887653 34433 


Q ss_pred             -----EEEEEeccC
Q psy17342        382 -----ITMFDVGEV  390 (401)
Q Consensus       382 -----v~iw~~~~~  390 (401)
                           +++|++...
T Consensus       266 ~~~~~v~i~~l~~~  279 (434)
T 2oit_A          266 ETSPDVVMALLPKK  279 (434)
T ss_dssp             SSCCEEEEEECCCT
T ss_pred             CCCCceEEEEeccC
Confidence                 899999865

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.90  E-value=3.4e-22  Score=192.10  Aligned_cols=340  Identities=10%  Similarity=0.037  Sum_probs=207.2

Q ss_pred             chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeE
Q psy17342          2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELL   81 (401)
Q Consensus         2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   81 (401)
                      .|..-+..++++ .||.+++||....+....+                        ..+. .....|.+++|||||++|+
T Consensus        22 ~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~------------------------~~~~-~~~~~~~~~~~SpDg~~la   75 (719)
T 1z68_A           22 NWISGQEYLHQS-ADNNIVLYNIETGQSYTIL------------------------SNRT-MKSVNASNYGLSPDRQFVY   75 (719)
T ss_dssp             EESSSSEEEEEC-TTSCEEEEESSSCCEEEEE------------------------CHHH-HHTTTCSEEEECTTSSEEE
T ss_pred             EECCCCeEEEEc-CCCCEEEEEcCCCcEEEEE------------------------cccc-ccccceeeEEECCCCCeEE
Confidence            355555444444 5889999988766521100                        0000 0001388999999999999


Q ss_pred             EEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccc
Q psy17342         82 LASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPL  161 (401)
Q Consensus        82 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~  161 (401)
                      +++.... ....+.++.|++||+++++......+  ...+..++|||+| +.|+.+ .++.|++|++.+++....     
T Consensus        76 ~~~~~~~-~~~~s~~~~i~~~d~~~g~~~~~~~l--~~~~~~~~~SPDG-~~la~~-~~~~i~~~~~~~g~~~~l-----  145 (719)
T 1z68_A           76 LESDYSK-LWRYSYTATYYIYDLSNGEFVRGNEL--PRPIQYLCWSPVG-SKLAYV-YQNNIYLKQRPGDPPFQI-----  145 (719)
T ss_dssp             EEEEEEE-CSSSCEEEEEEEEETTTTEECCSSCC--CSSBCCEEECSST-TCEEEE-ETTEEEEESSTTSCCEEC-----
T ss_pred             EEecCce-eEEeecceEEEEEECCCCccccceec--CcccccceECCCC-CEEEEE-ECCeEEEEeCCCCCcEEE-----
Confidence            8872100 00001268999999998765211111  3568899999998 566665 478999999987764321     


Q ss_pred             cccCCCCcE-----------------EEEEEeecCCceEEEEEeCCC---------------------------------
Q psy17342        162 SVMAHTHPV-----------------FCMSVIGTQNAHNLISISNDG---------------------------------  191 (401)
Q Consensus       162 ~~~~~~~~v-----------------~~~~~~~~~~~~~l~s~~~dg---------------------------------  191 (401)
                      ...++...|                 .+++|  +|+|+.|++++.|.                                 
T Consensus       146 ~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w--SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~  223 (719)
T 1z68_A          146 TFNGRENKIFNGIPDWVYEEEMLATKYALWW--SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPV  223 (719)
T ss_dssp             CCCCBTTTEEESSCCHHHHHHTTCSSCCEEE--CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCE
T ss_pred             ecCCCcCCeEcccccceeeeecccCcccEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCe
Confidence            112332222                 47899  99999999987652                                 


Q ss_pred             -cEEEeeccCCCCCcccccccc-ccccCCccceEEEEeccCCCCeEEEEcCC----ceEEEEe----CCCCCCCceeee-
Q psy17342        192 -RLCSWSLEMLSSPQETRDLQY-NNKQTKNLAVLSLAFPQNDVNNFVVGCED----GNVYSAC----RHGNKAGNVECY-  260 (401)
Q Consensus       192 -~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~~~~----~~~~~~~~~~~~-  260 (401)
                       .|.+||+..... .....+.. ..+..+...+.+++|+ |+++++++....    ..|++||    ..+.+  ....+ 
T Consensus       224 ~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S-pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~--~~~~~~  299 (719)
T 1z68_A          224 VRIFIIDTTYPAY-VGPQEVPVPAMIASSDYYFSWLTWV-TDERVCLQWLKRVQNVSVLSICDFREDWQTWD--CPKTQE  299 (719)
T ss_dssp             EEEEEEESSCHHH-HCCEECCCCHHHHTSCEEEEEEEES-SSSEEEEEEEESSTTEEEEEEEEECSSSSSEE--CCGGGE
T ss_pred             eEEEEEECCCCCc-cceeEccCCccCCCCcceEEEeEEe-CCCeEEEEEeccccCeEEEEEEcccCCCCCCc--eEEEEe
Confidence             678888875211 00011110 0022467789999999 677766664322    3488888    65433  22333 


Q ss_pred             ---cCCCCcee-----eeecCccCCCCCCCcEEE--EEeCCC--eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEE
Q psy17342        261 ---EGHEGPVV-----GLSSHRAQGHIDFSHLYL--TSSYDW--SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALF  328 (401)
Q Consensus       261 ---~~~~~~v~-----~i~~~~~~~~~~~~~~l~--s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l  328 (401)
                         .+|...+.     .+.|+|+      ++.++  +...++  .|.+||+.+++ ...+..+...+..+.++ +++.++
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~spd------g~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~  371 (719)
T 1z68_A          300 HIEESRTGWAGGFFVSTPVFSYD------AISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLF  371 (719)
T ss_dssp             EEEECSSSCSSSSSCCCCEECTT------SSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEE
T ss_pred             cccccCCceEccccCCccEECCC------CCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEE
Confidence               46777776     8899998      56443  344455  57777876665 45566556668887777 777566


Q ss_pred             EEEec----CCEEEEEeCCC--CCC-CcceEE-eecCCCCeEEEEecCCCcEEEEE-ecC--CcEEEEEeccCc
Q psy17342        329 ATVEV----AGRVDLWNLNL--DTE-VPATSA-IVEGAPALSRVTWTPNGTQLCVG-DEK--GAITMFDVGEVG  391 (401)
Q Consensus       329 ~~~~~----d~~i~iwd~~~--~~~-~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~-~~d--g~v~iw~~~~~~  391 (401)
                      +++..    ++..++|.+..  +.. ...+.. ..++...+..+.|+|++++++.. +..  ..+.+||+.+++
T Consensus       372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          372 YSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             EEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred             EEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence            66654    47888998764  211 111100 00134567889999999877743 333  468899987774

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=8.7e-21  Score=166.35  Aligned_cols=251  Identities=11%  Similarity=0.103  Sum_probs=178.1

Q ss_pred             cCCCeeEEEEeCCCCceEEEEec------CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEE-EEEeC
Q psy17342        117 CQSPVLSCCFAKFNPYLILGGTY------SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNL-ISISN  189 (401)
Q Consensus       117 ~~~~v~~~~~~~~~~~~l~~g~~------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~  189 (401)
                      ....+..++|+|++..++++...      ++.|.+||..+++.....       .....+..++|  +++++.+ ++...
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-------~~~~~~~~~~~--s~dg~~l~v~~~~  109 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI-------HNDLKPFGATI--NNTTQTLWFGNTV  109 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEE-------EESSCCCSEEE--ETTTTEEEEEETT
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE-------ecCCCcceEEE--CCCCCEEEEEecC
Confidence            34678899999988544444322      678999999887643221       12234667888  8888855 45566


Q ss_pred             CCcEEEeeccCCCCCcccccccccc--ccCCccceEEEEeccCCCCeEEEEc--CCceEEEEeCCCCCCCceeeecCCCC
Q psy17342        190 DGRLCSWSLEMLSSPQETRDLQYNN--KQTKNLAVLSLAFPQNDVNNFVVGC--EDGNVYSACRHGNKAGNVECYEGHEG  265 (401)
Q Consensus       190 dg~i~~wd~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~~~~~~~~~~~~~~~~~~~~~  265 (401)
                      ++.|.+||..+.. ...........  .......+.+++|+ ++++.++++.  .++.|++||....  +....+..+..
T Consensus       110 ~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~  185 (353)
T 3vgz_A          110 NSAVTAIDAKTGE-VKGRLVLDDRKRTEEVRPLQPRELVAD-DATNTVYISGIGKESVIWVVDGGNI--KLKTAIQNTGK  185 (353)
T ss_dssp             TTEEEEEETTTCC-EEEEEESCCCCCCSSCCCCEEEEEEEE-TTTTEEEEEEESSSCEEEEEETTTT--EEEEEECCCCT
T ss_pred             CCEEEEEeCCCCe-eEEEEecCCCccccccCCCCCceEEEC-CCCCEEEEEecCCCceEEEEcCCCC--ceEEEecCCCC
Confidence            7999999997632 22222221100  00011237889999 7888777665  5788999998743  34555654566


Q ss_pred             ceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee----cCCceEEEEECCCCCcEEEEEecCCEEEEEe
Q psy17342        266 PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE----FRDYVMDVQWSPINPALFATVEVAGRVDLWN  341 (401)
Q Consensus       266 ~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd  341 (401)
                      .+.+++|+|+      ++++++++.++.|.+||..+++.+..+..    +...+.+++|+|+++.++++...++.|.+||
T Consensus       186 ~~~~~~~s~d------g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d  259 (353)
T 3vgz_A          186 MSTGLALDSE------GKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVD  259 (353)
T ss_dssp             TCCCCEEETT------TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEE
T ss_pred             ccceEEECCC------CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEE
Confidence            6889999998      78888888899999999999988877764    4556889999999986666666669999999


Q ss_pred             CCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEe-cCCcEEEEEeccCc
Q psy17342        342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGD-EKGAITMFDVGEVG  391 (401)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~v~iw~~~~~~  391 (401)
                      +.+++....+..  +  . ...++|+|+|+++++++ .++.|.+||+.+++
T Consensus       260 ~~~~~~~~~~~~--~--~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~  305 (353)
T 3vgz_A          260 TRNGNILAKVAA--P--E-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK  305 (353)
T ss_dssp             TTTCCEEEEEEC--S--S-CCCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred             CCCCcEEEEEEc--C--C-CceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence            998776544432  2  2 25699999999666555 68999999998874

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=7.6e-20  Score=160.95  Aligned_cols=278  Identities=7%  Similarity=-0.004  Sum_probs=173.6

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCC--CCCceEEEe-cCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK--KTTPEFEFF-CQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~--~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      ..+..++|+|+|++|++++..      ...++.|.+|++...  +........ +......+++  ++..++++...++.
T Consensus        50 ~~p~~l~~spdg~~l~~~~~~------~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~  121 (361)
T 3scy_A           50 ANPSYLIPSADGKFVYSVNEF------SKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGS  121 (361)
T ss_dssp             SCCCSEEECTTSSEEEEEECC------SSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTE
T ss_pred             CCCceEEECCCCCEEEEEEcc------CCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCE
Confidence            557789999999999999820      002389999998753  222222222 3456777787  56445555556889


Q ss_pred             EEEEECCCCCCCceeec--------cccccCCCCcEEEEEEeecCCceEEEEEe-CCCcEEEeeccCCCC------Cccc
Q psy17342        143 IVLWDTRVQKKTPVHRT--------PLSVMAHTHPVFCMSVIGTQNAHNLISIS-NDGRLCSWSLEMLSS------PQET  207 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~------~~~~  207 (401)
                      |.+|++...........        +.....+...+.+++|  +|+++++++++ .++.|.+|++.....      ....
T Consensus       122 v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~  199 (361)
T 3scy_A          122 ITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRI--TPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK  199 (361)
T ss_dssp             EEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE
T ss_pred             EEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEE--CCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec
Confidence            99999975432211100        0001223445688999  99998666554 588999999875332      1000


Q ss_pred             ---cccccccccCCccceEEEEeccCCCCeEEEEc-CCceEEEEeCCCCCCCceeee---cCCCCceeeeecCccCCCCC
Q psy17342        208 ---RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-EDGNVYSACRHGNKAGNVECY---EGHEGPVVGLSSHRAQGHID  280 (401)
Q Consensus       208 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~~  280 (401)
                         ...    .......+..++|+ ++++++++++ .++.|.+|++.......+..+   ..+......++|+|+     
T Consensus       200 ~~~~~~----~~~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spd-----  269 (361)
T 3scy_A          200 GTPEAF----KVAPGSGPRHLIFN-SDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPD-----  269 (361)
T ss_dssp             EEEEEE----ECCTTCCEEEEEEC-TTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTT-----
T ss_pred             ccccce----ecCCCCCCeEEEEc-CCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCC-----
Confidence               000    11234567899999 8898777666 689999999874332222222   233345679999999     


Q ss_pred             CCcEEEEEeC--CCeEEEEEee--CCC--ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCC--CCCCCcceE
Q psy17342        281 FSHLYLTSSY--DWSVKLWNIK--ENK--PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN--LDTEVPATS  352 (401)
Q Consensus       281 ~~~~l~s~~~--d~~i~iwd~~--~~~--~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~  352 (401)
                       +++|+++..  ++.|.+|++.  +++  .+..+.. ...+.+++|+|+|+.++++...++.|.+|++.  +++......
T Consensus       270 -g~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~  347 (361)
T 3scy_A          270 -GKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK  347 (361)
T ss_dssp             -SSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC
T ss_pred             -CCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce
Confidence             677766555  4899999996  344  3344444 45678999999998554444478999997554  444322110


Q ss_pred             EeecCCCCeEEEEec
Q psy17342        353 AIVEGAPALSRVTWT  367 (401)
Q Consensus       353 ~~~~~~~~v~~~~~s  367 (401)
                        ..+...+.++.|.
T Consensus       348 --~~~~~~p~~v~~~  360 (361)
T 3scy_A          348 --DIKVDKPVCLKFV  360 (361)
T ss_dssp             --CEECSSEEEEEEE
T ss_pred             --eeeCCCCeEEEEc
Confidence              1123457788875

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.88  E-value=4.4e-20  Score=162.60  Aligned_cols=278  Identities=10%  Similarity=0.042  Sum_probs=173.6

Q ss_pred             cEEEEEeCc--CCCCCceEEE--ecCCCeeEEEEeCCCCceEEEEecCCeEEEEECC-CCCCCceeeccccccCCCCcEE
Q psy17342         97 GVCLIWNTK--FKKTTPEFEF--FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTR-VQKKTPVHRTPLSVMAHTHPVF  171 (401)
Q Consensus        97 ~~v~iwd~~--~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~~~v~  171 (401)
                      +.|.+|+++  +++.......  .....+..++|+|++ ++|++++.+ .|.+|++. +++......    ...+ +...
T Consensus        14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g~~~~~~~----~~~~-g~~~   86 (365)
T 1jof_A           14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHER-KNIYGAAMK-KWSSFAVKSPTEIVHEAS----HPIG-GHPR   86 (365)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTS-SEEEEEEBT-EEEEEEEEETTEEEEEEE----EECC-SSGG
T ss_pred             CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCC-CEEEEEccc-eEEEEEECCCCCEEEeeE----eecC-CCCc
Confidence            568887764  3332211111  123468899999988 667777766 99999997 544321111    1111 1234


Q ss_pred             EEEEeecCCceE--EEEEe-------------CCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEE
Q psy17342        172 CMSVIGTQNAHN--LISIS-------------NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFV  236 (401)
Q Consensus       172 ~~~~~~~~~~~~--l~s~~-------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  236 (401)
                      .++|  +|++++  +++++             .+|.+.+|++...+..........   ..+...+.+++|+ |++++++
T Consensus        87 ~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~s-pdG~~l~  160 (365)
T 1jof_A           87 ANDA--DTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE---YQENTGIHGMVFD-PTETYLY  160 (365)
T ss_dssp             GGCT--TSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE---CCTTCCEEEEEEC-TTSSEEE
T ss_pred             cEEE--CCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEE---eCCCCcceEEEEC-CCCCEEE
Confidence            5777  899984  44543             688999999974232221111100   0134568899999 8898887


Q ss_pred             EEc-CCceEEEEeCC-CCCCCceeeec--CCCCceeeeecCccCCCCCCCcEEEEEeC-CCeEEEEEee--CCCce---E
Q psy17342        237 VGC-EDGNVYSACRH-GNKAGNVECYE--GHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DWSVKLWNIK--ENKPV---H  306 (401)
Q Consensus       237 ~~~-~d~~i~~~~~~-~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~--~~~~~---~  306 (401)
                      ++. .++.|++|++. ..+...+..+.  .|...+..++|+|+      ++++++++. ++.|.+|++.  +++..   .
T Consensus       161 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spd------g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~  234 (365)
T 1jof_A          161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT------GNYLYALMEAGNRICEYVIDPATHMPVYTHH  234 (365)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT------SSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred             EEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCC------CCEEEEEECCCCeEEEEEEeCCCCcEEEccc
Confidence            765 46799999987 33222222333  24566889999999      677777665 7899999876  45442   1


Q ss_pred             EEee-------cCC------ceEEEE-ECCCCCcEEEEEecCC-----EEEEEeCC-CCCCCcceEEeecCCCCeEEEEe
Q psy17342        307 SFNE-------FRD------YVMDVQ-WSPINPALFATVEVAG-----RVDLWNLN-LDTEVPATSAIVEGAPALSRVTW  366 (401)
Q Consensus       307 ~~~~-------~~~------~v~~v~-~~~~~~~~l~~~~~d~-----~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~  366 (401)
                      .+..       |..      .+..++ |+|+|+.++++...++     .|.+|++. +++..........+...+..++|
T Consensus       235 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~  314 (365)
T 1jof_A          235 SFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAV  314 (365)
T ss_dssp             EEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCE
T ss_pred             eEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCccccee
Confidence            2221       121      588999 9999984444333333     89999996 34322111111123344667899


Q ss_pred             cC---CCcEEEEEecC-CcEEEEEeccCccc
Q psy17342        367 TP---NGTQLCVGDEK-GAITMFDVGEVGIA  393 (401)
Q Consensus       367 s~---~g~~l~~~~~d-g~v~iw~~~~~~~~  393 (401)
                      +|   ||++|++++.+ +.|.+|++....++
T Consensus       315 sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l~  345 (365)
T 1jof_A          315 SPCPWSDEWMAITDDQEGWLEIYRWKDEFLH  345 (365)
T ss_dssp             EECTTCTTEEEEECSSSCEEEEEEEETTEEE
T ss_pred             cCCCcCCCEEEEEEcCCCeEEEEEEchhhCc
Confidence            99   89999998864 89999999876443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=3.4e-21  Score=185.13  Aligned_cols=283  Identities=6%  Similarity=-0.006  Sum_probs=187.1

Q ss_pred             EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecC----CCeeEEEEeCCCCceEEEEec------
Q psy17342         70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ----SPVLSCCFAKFNPYLILGGTY------  139 (401)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~g~~------  139 (401)
                      +++|+|+|+ +++.+          .|+.|++||+.+++...  ...+.    ..+.+++|||++ ++|+.++.      
T Consensus        20 ~~~~s~dg~-~~~~~----------~d~~i~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~SpDg-~~la~~~~~~~~~~   85 (719)
T 1z68_A           20 FPNWISGQE-YLHQS----------ADNNIVLYNIETGQSYT--ILSNRTMKSVNASNYGLSPDR-QFVYLESDYSKLWR   85 (719)
T ss_dssp             CCEESSSSE-EEEEC----------TTSCEEEEESSSCCEEE--EECHHHHHTTTCSEEEECTTS-SEEEEEEEEEECSS
T ss_pred             ccEECCCCe-EEEEc----------CCCCEEEEEcCCCcEEE--EEccccccccceeeEEECCCC-CeEEEEecCceeEE
Confidence            679999995 55555          58999999999776432  23322    248999999988 56666654      


Q ss_pred             ---CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccc--c
Q psy17342        140 ---SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYN--N  214 (401)
Q Consensus       140 ---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~--~  214 (401)
                         ++.|++||+.+++....       ......+..++|  +|+|+.|+.+. ++.|++|++..... .....-...  .
T Consensus        86 ~s~~~~i~~~d~~~g~~~~~-------~~l~~~~~~~~~--SPDG~~la~~~-~~~i~~~~~~~g~~-~~l~~~~~~~~v  154 (719)
T 1z68_A           86 YSYTATYYIYDLSNGEFVRG-------NELPRPIQYLCW--SPVGSKLAYVY-QNNIYLKQRPGDPP-FQITFNGRENKI  154 (719)
T ss_dssp             SCEEEEEEEEETTTTEECCS-------SCCCSSBCCEEE--CSSTTCEEEEE-TTEEEEESSTTSCC-EECCCCCBTTTE
T ss_pred             eecceEEEEEECCCCccccc-------eecCcccccceE--CCCCCEEEEEE-CCeEEEEeCCCCCc-EEEecCCCcCCe
Confidence               68999999988764110       011245788999  99999999986 77999999975322 111100000  0


Q ss_pred             ccCCc---------cceEEEEeccCCCCeEEEEcCCc----------------------------------eEEEEeCCC
Q psy17342        215 KQTKN---------LAVLSLAFPQNDVNNFVVGCEDG----------------------------------NVYSACRHG  251 (401)
Q Consensus       215 ~~~~~---------~~v~~~~~~~~~~~~l~~~~~d~----------------------------------~i~~~~~~~  251 (401)
                      ..++.         ....+++|+ ||++.|++++.|.                                  .|++||+.+
T Consensus       155 ~~g~~~~v~~ee~~~~~~~~~wS-PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~  233 (719)
T 1z68_A          155 FNGIPDWVYEEEMLATKYALWWS-PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY  233 (719)
T ss_dssp             EESSCCHHHHHHTTCSSCCEEEC-TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC
T ss_pred             EcccccceeeeecccCcccEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC
Confidence            00111         112589999 8999999887542                                  788999875


Q ss_pred             CCCC---ce---eeecCCCCceeeeecCccCCCCCCCcEEEEEeCC----CeEEEEE----eeCCCceEEE----eecCC
Q psy17342        252 NKAG---NV---ECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD----WSVKLWN----IKENKPVHSF----NEFRD  313 (401)
Q Consensus       252 ~~~~---~~---~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d----~~i~iwd----~~~~~~~~~~----~~~~~  313 (401)
                      ....   .+   ..+.+|...+.+++|+|+      ++++++....    ..|.+||    +.++++...+    ..|..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD------~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~  307 (719)
T 1z68_A          234 PAYVGPQEVPVPAMIASSDYYFSWLTWVTD------ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTG  307 (719)
T ss_dssp             HHHHCCEECCCCHHHHTSCEEEEEEEESSS------SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSS
T ss_pred             CCccceeEccCCccCCCCcceEEEeEEeCC------CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCc
Confidence            4310   01   223468888999999998      6777775432    2488899    7666655444    45666


Q ss_pred             ceE-----EEEECCCCCcEEE-EEecCC--EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC-----C
Q psy17342        314 YVM-----DVQWSPINPALFA-TVEVAG--RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK-----G  380 (401)
Q Consensus       314 ~v~-----~v~~~~~~~~~l~-~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g  380 (401)
                      .+.     .+.|+|+|+.+++ +...+|  .|.+||+.+++.. .+   ..+...+..+.++ +++.|+..+.+     +
T Consensus       308 ~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~-~l---t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~  382 (719)
T 1z68_A          308 WAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAI-QI---TSGKWEAINIFRV-TQDSLFYSSNEFEEYPG  382 (719)
T ss_dssp             CSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCE-EC---SCSSSCEEEEEEE-CSSEEEEEESCGGGCTT
T ss_pred             eEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceE-ec---ccCceEEEEEEEE-eCCEEEEEEecCCCCCc
Confidence            666     8899999985444 344555  5777787665421 11   2344557777777 87777666554     8


Q ss_pred             cEEEEEecc
Q psy17342        381 AITMFDVGE  389 (401)
Q Consensus       381 ~v~iw~~~~  389 (401)
                      .+++|.+..
T Consensus       383 ~~~l~~~~~  391 (719)
T 1z68_A          383 RRNIYRISI  391 (719)
T ss_dssp             CBEEEEEEC
T ss_pred             eEEEEEEeC
Confidence            899999875

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=9.9e-21  Score=165.67  Aligned_cols=290  Identities=8%  Similarity=-0.036  Sum_probs=175.9

Q ss_pred             hhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEE
Q psy17342          4 AEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLA   83 (401)
Q Consensus         4 ~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   83 (401)
                      +.-+..+++++.++.+.+||....+.+..+                        ..   .....+..++|+|+++.++++
T Consensus         8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~------------------------~~---~~~~~~~~~~~s~dg~~~~v~   60 (349)
T 1jmx_B            8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSC------------------------VM---PDKFGPGTAMMAPDNRTAYVL   60 (349)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEE------------------------EC---SSCCSSCEEEECTTSSEEEEE
T ss_pred             cCCCEEEEEeCCCCeEEEEECCCCcEEEEE------------------------ec---CCCCCCceeEECCCCCEEEEE
Confidence            344667888999999999998655411110                        00   001146789999999877766


Q ss_pred             EeccCCCCCCCCCcEEEEEeCcCCCCCceEEEec-----CCCeeEEEEeCCCCceEEEEecC------------CeEEEE
Q psy17342         84 SYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-----QSPVLSCCFAKFNPYLILGGTYS------------GQIVLW  146 (401)
Q Consensus        84 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~g~~d------------g~v~iw  146 (401)
                      .         ..++.|.+||+.+++........+     ...+..++|+|++ +++++++.+            +.|.+|
T Consensus        61 ~---------~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~  130 (349)
T 1jmx_B           61 N---------NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVF  130 (349)
T ss_dssp             E---------TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred             e---------CCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEE
Confidence            6         268999999998776554443322     2237899999988 566666544            899999


Q ss_pred             ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccc-----------
Q psy17342        147 DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNK-----------  215 (401)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-----------  215 (401)
                      |+.+++.....    ....+...+.+++|  ++++. +++++.  .|.+||+.+.. ............           
T Consensus       131 d~~~~~~~~~~----~~~~~~~~~~~~~~--s~dg~-l~~~~~--~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  200 (349)
T 1jmx_B          131 STADGLEAKPV----RTFPMPRQVYLMRA--ADDGS-LYVAGP--DIYKMDVKTGK-YTVALPLRNWNRKGYSAPDVLYF  200 (349)
T ss_dssp             EGGGGGGBCCS----EEEECCSSCCCEEE--CTTSC-EEEESS--SEEEECTTTCC-EEEEECSTTCCCTTBCCCBCCCC
T ss_pred             ECCCcccccee----eeccCCCcccceeE--CCCCc-EEEccC--cEEEEeCCCCc-eeccccccccCCccccCccceee
Confidence            99875432111    11223346788889  89998 555544  49999987532 111111110000           


Q ss_pred             ---c---CCccceEEEEeccCCCCeEEEEcCCc-eEEEEeCCCCCCCceeeecCCCCceeeeecCc-cCCCCCCCcEEEE
Q psy17342        216 ---Q---TKNLAVLSLAFPQNDVNNFVVGCEDG-NVYSACRHGNKAGNVECYEGHEGPVVGLSSHR-AQGHIDFSHLYLT  287 (401)
Q Consensus       216 ---~---~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~~~~~~l~s  287 (401)
                         .   ........++++ +++.......... .+..++....+.. ...+..+...+.+++++| +      ++++++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~sp~d------g~~l~~  272 (349)
T 1jmx_B          201 WPHQSPRHEFSMLYTIARF-KDDKQDPATADLLYGYLSVDLKTGKTH-TQEFADLTELYFTGLRSPKD------PNQIYG  272 (349)
T ss_dssp             CCCCCTTCEEEEEEEEEEC--------CCCEEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECSSC------TTEEEE
T ss_pred             ecCCCcceeEEeeeeeeec-CCCcCCccccccceeEEEEeccCCcEE-ecccccCCCcceeeEecCCC------CCEEEE
Confidence               0   000023345555 2221110000011 1112344322211 112223556778999999 7      677777


Q ss_pred             EeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceE
Q psy17342        288 SSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATS  352 (401)
Q Consensus       288 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  352 (401)
                      +  ++.|.+||+.+++.+..+.. ...+.+++|+|+++. |++++.++.|++||+.+++.+..+.
T Consensus       273 ~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~-l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          273 V--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             E--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSC-EEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             E--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCE-EEEecCCCeEEEEeccccceeeeee
Confidence            7  88999999999888877765 345789999999974 5557888999999998876554443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=3.6e-20  Score=173.57  Aligned_cols=232  Identities=13%  Similarity=0.042  Sum_probs=163.6

Q ss_pred             CCCeeEEEEeCCCCceEEEEec-CCeEEEEECCCCCCCceeeccccccCCC-CcEEEEEEeecCCceEEEEEeC---CCc
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTY-SGQIVLWDTRVQKKTPVHRTPLSVMAHT-HPVFCMSVIGTQNAHNLISISN---DGR  192 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~---dg~  192 (401)
                      ..+|++++|+|||. .|+.++. +|+++||++.+++..       .+..|. ..+..++|  +|+ ..+++++.   +..
T Consensus        21 ~~~~~~~~~~~DG~-~la~~s~~~g~~~lw~~~~g~~~-------~lt~~~~~~~~~~~~--spd-~~l~~~~~~~g~~~   89 (582)
T 3o4h_A           21 AVEKYSLQGVVDGD-KLLVVGFSEGSVNAYLYDGGETV-------KLNREPINSVLDPHY--GVG-RVILVRDVSKGAEQ   89 (582)
T ss_dssp             HSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTEEE-------ECCSSCCSEECEECT--TCS-EEEEEEECSTTSCC
T ss_pred             ccchheeecCCCCC-eEEEEEccCCceeEEEEcCCCcE-------eeecccccccccccC--CCC-eEEEEeccCCCCcc
Confidence            46899999999984 5555554 999999998654422       123444 68899999  888 77777765   456


Q ss_pred             EEEeeccC--CCCCccccccccccccCCccceEEEEeccCCCC-eEEEEcCCceEEEEeCCCCCCCceeeecCCCCceee
Q psy17342        193 LCSWSLEM--LSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVN-NFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVG  269 (401)
Q Consensus       193 i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~  269 (401)
                      ..+|.+..  .+...   .+..      ...+...+|+ ++++ .+++...++.+.+||+.+..   ...+..+..  .+
T Consensus        90 ~~l~~~~~~~~g~~~---~l~~------~~~~~~~~~s-~dg~~~~~~s~~~~~~~l~d~~~g~---~~~l~~~~~--~~  154 (582)
T 3o4h_A           90 HALFKVNTSRPGEEQ---RLEA------VKPMRILSGV-DTGEAVVFTGATEDRVALYALDGGG---LRELARLPG--FG  154 (582)
T ss_dssp             EEEEEEETTSTTCCE---ECTT------SCSBEEEEEE-ECSSCEEEEEECSSCEEEEEEETTE---EEEEEEESS--CE
T ss_pred             eEEEEEeccCCCccc---cccC------CCCceeeeeC-CCCCeEEEEecCCCCceEEEccCCc---EEEeecCCC--ce
Confidence            67776654  23222   1111      1123355777 4554 34444445555699987543   223332333  78


Q ss_pred             eecCccCCCCCCCcEEEEEeCC----CeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCC--EEEEEeCC
Q psy17342        270 LSSHRAQGHIDFSHLYLTSSYD----WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAG--RVDLWNLN  343 (401)
Q Consensus       270 i~~~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~--~i~iwd~~  343 (401)
                      ++|+|+      ++++++++.+    +.|++||+.+++.. .+..|...+..++|+|||+ .|+++..++  .|++||+.
T Consensus       155 ~~~spD------G~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~i~~~d~~  226 (582)
T 3o4h_A          155 FVSDIR------GDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMK-VTAGLETAREARLVTVDPR  226 (582)
T ss_dssp             EEEEEE------TTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSC-EEEEEECSSCEEEEEECTT
T ss_pred             EEECCC------CCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCC-EEEEccCCCeeEEEEEcCC
Confidence            999999      8999988777    78999999877754 6778888899999999998 677777888  89999998


Q ss_pred             CCCCCcceEEeecCCCCeEEEE--------ecCCCcEEEEEecCCcEEEEEe
Q psy17342        344 LDTEVPATSAIVEGAPALSRVT--------WTPNGTQLCVGDEKGAITMFDV  387 (401)
Q Consensus       344 ~~~~~~~~~~~~~~~~~v~~~~--------~s~~g~~l~~~~~dg~v~iw~~  387 (401)
                      +++.. .   ...+...+..++        |+|||.++++++.||.+++|++
T Consensus       227 ~~~~~-~---~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          227 DGSVE-D---LELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             TCCEE-E---CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CCcEE-E---ccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            87644 2   234445555566        9999999999999999999999

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=5.9e-19  Score=155.39  Aligned_cols=254  Identities=8%  Similarity=-0.007  Sum_probs=165.1

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCc-CCCCCceEEEecCCCeeEEEEeCCCCc-eEEEEe-----
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTK-FKKTTPEFEFFCQSPVLSCCFAKFNPY-LILGGT-----  138 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~g~-----  138 (401)
                      ..+..++|+|+|++|++++          .+ .|.+|++. +++..........+.+.+++|+|++.. ++++++     
T Consensus        40 ~~~~~~a~spdg~~l~~~~----------~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~  108 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAA----------MK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYA  108 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEE----------BT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCC
T ss_pred             CCCcEEEECCCCCEEEEEc----------cc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcce
Confidence            4578899999999898888          35 99999997 554432222211234667899998843 455553     


Q ss_pred             --------cCCeEEEEECCC-CCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-CCcEEEeeccCCCCCcccc
Q psy17342        139 --------YSGQIVLWDTRV-QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-DGRLCSWSLEMLSSPQETR  208 (401)
Q Consensus       139 --------~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~  208 (401)
                              .+|.+.+|++.. ++....... . ...+...+.+++|  +|++++++++.. ++.|.+|++...++.....
T Consensus       109 ~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~-~-~~~~~~~~~~~~~--spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~  184 (365)
T 1jof_A          109 VYANPFYKFAGYGNVFSVSETGKLEKNVQN-Y-EYQENTGIHGMVF--DPTETYLYSADLTANKLWTHRKLASGEVELVG  184 (365)
T ss_dssp             EEEEEESSSCCEEEEEEECTTCCEEEEEEE-E-ECCTTCCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred             eccceeecCCceEEEEccCCCCcCcceEee-E-EeCCCCcceEEEE--CCCCCEEEEEcCCCCEEEEEEECCCCCEEEee
Confidence                    589999999974 332111110 0 0135567899999  999998887654 6799999997212111111


Q ss_pred             ccccccccCCccceEEEEeccCCCCeEEEEcC-CceEEEEeCCCCCCCce------eeec----CCCC------ceeeee
Q psy17342        209 DLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE-DGNVYSACRHGNKAGNV------ECYE----GHEG------PVVGLS  271 (401)
Q Consensus       209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~------~~~~----~~~~------~v~~i~  271 (401)
                      .+.   ...+...+..++|+ |+++++++++. ++.|.+|+......+..      ..+.    +|..      .+..++
T Consensus       185 ~~~---~~~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  260 (365)
T 1jof_A          185 SVD---APDPGDHPRWVAMH-PTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC  260 (365)
T ss_dssp             EEE---CSSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred             eEe---cCCCCCCCCEeEEC-CCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEE
Confidence            111   01124568999999 89988877764 78999997753222221      1121    2222      578899


Q ss_pred             -cCccCCCCCCCcEEEEEeCC-C-----eEEEEEee-CCCceE---EEeecCCceEEEEECC---CCCcEEEEEec-CCE
Q psy17342        272 -SHRAQGHIDFSHLYLTSSYD-W-----SVKLWNIK-ENKPVH---SFNEFRDYVMDVQWSP---INPALFATVEV-AGR  336 (401)
Q Consensus       272 -~~~~~~~~~~~~~l~s~~~d-~-----~i~iwd~~-~~~~~~---~~~~~~~~v~~v~~~~---~~~~~l~~~~~-d~~  336 (401)
                       |+|+      +++|++++.+ .     .|.+|++. +++...   ....+...+..++|+|   +|+ +|++++. ++.
T Consensus       261 ~~spd------G~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~-~l~v~~~~~~~  333 (365)
T 1jof_A          261 ALTFS------GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE-WMAITDDQEGW  333 (365)
T ss_dssp             EECTT------SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT-EEEEECSSSCE
T ss_pred             EECCC------CCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC-EEEEEEcCCCe
Confidence             9999      6777666543 3     89999996 555433   1333445567899999   787 5666655 589


Q ss_pred             EEEEeCCCC
Q psy17342        337 VDLWNLNLD  345 (401)
Q Consensus       337 i~iwd~~~~  345 (401)
                      |.+|++...
T Consensus       334 v~v~~~~~~  342 (365)
T 1jof_A          334 LEIYRWKDE  342 (365)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEchh
Confidence            999998765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.83  E-value=1.7e-19  Score=160.33  Aligned_cols=279  Identities=10%  Similarity=0.021  Sum_probs=177.3

Q ss_pred             EEecCCCCCeEEEEeccCCCCCCCCCc--EEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEEC
Q psy17342         71 MDWSTQHPELLLASYHRNKEAPNEPDG--VCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDT  148 (401)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~~~~~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~  148 (401)
                      .+|+|||++|+.++.         .++  .|.+||+.+++.... ...+...+..++|+|++ +.|+.++.++.|++||+
T Consensus        41 ~~~SpDg~~l~~~~~---------~~g~~~l~~~d~~~g~~~~l-t~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~  109 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGA---------FDGPWNYYLLDLNTQVATQL-TEGRGDNTFGGFLSPDD-DALFYVKDGRNLMRVDL  109 (388)
T ss_dssp             CCBCTTSCEEEEEEC---------TTSSCEEEEEETTTCEEEEC-CCSSCBCSSSCEECTTS-SEEEEEETTTEEEEEET
T ss_pred             ccCCCCCCEEEEEEc---------CCCCceEEEEeCCCCceEEe-eeCCCCCccceEEcCCC-CEEEEEeCCCeEEEEEC
Confidence            789999999999982         255  588889886654321 12233344567899988 56777777889999999


Q ss_pred             CCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEE----------------------eCCCcEEEeeccCCCCCcc
Q psy17342        149 RVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISI----------------------SNDGRLCSWSLEMLSSPQE  206 (401)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------------------~~dg~i~~wd~~~~~~~~~  206 (401)
                      .+++....      ...+...+....|..++++..++..                      ..+..|.+||+... ... 
T Consensus       110 ~~g~~~~~------~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-~~~-  181 (388)
T 3pe7_A          110 ATLEENVV------YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG-EST-  181 (388)
T ss_dssp             TTCCEEEE------EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC-CEE-
T ss_pred             CCCcceee------eechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC-ceE-
Confidence            98765432      1334455555555447888887743                      23467888998752 211 


Q ss_pred             ccccccccccCCccceEEEEeccC-CCCeEEEEcCC------ceEEEEeCCCCCCCceeeecCCC--CceeeeecCccCC
Q psy17342        207 TRDLQYNNKQTKNLAVLSLAFPQN-DVNNFVVGCED------GNVYSACRHGNKAGNVECYEGHE--GPVVGLSSHRAQG  277 (401)
Q Consensus       207 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~d------~~i~~~~~~~~~~~~~~~~~~~~--~~v~~i~~~~~~~  277 (401)
                        .+.     .+...+..++|+ | +++.|+....+      ..|++++..+..   ...+..+.  ..+....|+|+  
T Consensus       182 --~l~-----~~~~~~~~~~~s-p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~spd--  248 (388)
T 3pe7_A          182 --VIL-----QENQWLGHPIYR-PYDDSTVAFCHEGPHDLVDARMWLINEDGTN---MRKVKTHAEGESCTHEFWVPD--  248 (388)
T ss_dssp             --EEE-----EESSCEEEEEEE-TTEEEEEEEEECSCTTTSSCSEEEEETTSCC---CEESCCCCTTEEEEEEEECTT--
T ss_pred             --Eee-----cCCccccccEEC-CCCCCEEEEEEecCCCCCcceEEEEeCCCCc---eEEeeeCCCCcccccceECCC--
Confidence              111     144568899999 7 88888776653      368888876443   23333343  35778899998  


Q ss_pred             CCCCCcEEEEEeC-CC----eEEEEEeeCCCceE--EEeecCCc---eEEEEECCCCCcEEEEE--------ecCCEEEE
Q psy17342        278 HIDFSHLYLTSSY-DW----SVKLWNIKENKPVH--SFNEFRDY---VMDVQWSPINPALFATV--------EVAGRVDL  339 (401)
Q Consensus       278 ~~~~~~~l~s~~~-d~----~i~iwd~~~~~~~~--~~~~~~~~---v~~v~~~~~~~~~l~~~--------~~d~~i~i  339 (401)
                          ++.|+..+. ++    .|++||+.+++...  .+..+...   ...++|+|+|+.++++.        ..+..|++
T Consensus       249 ----g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~  324 (388)
T 3pe7_A          249 ----GSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYV  324 (388)
T ss_dssp             ----SSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEE
T ss_pred             ----CCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEE
Confidence                666654433 22    39999998876432  22221000   11237999998554433        45679999


Q ss_pred             EeCCCCCCCcceEEeecCCC-----------CeEEEEecCCCcEEEEEe-cCCcEEEEEecc
Q psy17342        340 WNLNLDTEVPATSAIVEGAP-----------ALSRVTWTPNGTQLCVGD-EKGAITMFDVGE  389 (401)
Q Consensus       340 wd~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~g~~l~~~~-~dg~v~iw~~~~  389 (401)
                      ||+.+++.. .+.   .+..           .+..++|+|||+.|+..+ .+|...||.+.-
T Consensus       325 ~d~~~~~~~-~l~---~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          325 FNMKNGTQH-RVA---RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             EETTTTEEE-EEE---ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred             EeccCCceE-Eec---cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence            999876532 222   2233           467889999998887655 567777776643

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.83  E-value=3.8e-18  Score=164.11  Aligned_cols=342  Identities=8%  Similarity=-0.033  Sum_probs=199.5

Q ss_pred             chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeecccc-ccccceEEEEecCCCCCe
Q psy17342          2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKW-SKNRNVTYMDWSTQHPEL   80 (401)
Q Consensus         2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l   80 (401)
                      .|..-+.+++++  ||.+++||...++....+                        ..+.. ........++|||||++|
T Consensus        23 ~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~Spdg~~l   76 (740)
T 4a5s_A           23 RWISDHEYLYKQ--ENNILVFNAEYGNSSVFL------------------------ENSTFDEFGHSINDYSISPDGQFI   76 (740)
T ss_dssp             EECSSSEEEEEE--TTEEEEEETTTCCEEEEE------------------------CTTTTTTCCSCCCEEEECTTSSEE
T ss_pred             EECCCCcEEEEc--CCcEEEEECCCCceEEEE------------------------echhhhhhcccccceEECCCCCEE
Confidence            366667777876  899999998776621111                        00000 111234568999999999


Q ss_pred             EEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecc
Q psy17342         81 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP  160 (401)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~  160 (401)
                      +.++.... ....+..+.+.+||+.+++...  ...+...+...+|||+| +.|+.+ .++.|++|++.++....     
T Consensus        77 ~~~~~~~~-~~r~~~~~~~~~~d~~~~~~~~--l~~~~~~~~~~~~SPdG-~~la~~-~~~~i~~~~~~~~~~~~-----  146 (740)
T 4a5s_A           77 LLEYNYVK-QWRHSYTASYDIYDLNKRQLIT--EERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPSYR-----  146 (740)
T ss_dssp             EEEEEEEE-CSSSCEEEEEEEEETTTTEECC--SSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCCEE-----
T ss_pred             EEEECCee-eEEEccceEEEEEECCCCcEEE--cccCCCcceeeEECCCC-CEEEEE-ECCeEEEEECCCCceEE-----
Confidence            98882100 0000112678899999876543  22356789999999998 455655 47899999998776432     


Q ss_pred             ccccCCCCcE-----------------EEEEEeecCCceEEEEEeCCC--------------------------------
Q psy17342        161 LSVMAHTHPV-----------------FCMSVIGTQNAHNLISISNDG--------------------------------  191 (401)
Q Consensus       161 ~~~~~~~~~v-----------------~~~~~~~~~~~~~l~s~~~dg--------------------------------  191 (401)
                      ++..++...+                 ..+.|  +|+|+.|+.++.|.                                
T Consensus       147 lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~  224 (740)
T 4a5s_A          147 ITWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV  224 (740)
T ss_dssp             CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC
T ss_pred             EcCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc
Confidence            1222333322                 34788  99999999876433                                


Q ss_pred             ----cEEEeeccC---CCCCccccccccc-cccCCccceEEEEeccCCCCeEEEEc----CCceEEEEeCCCCC----CC
Q psy17342        192 ----RLCSWSLEM---LSSPQETRDLQYN-NKQTKNLAVLSLAFPQNDVNNFVVGC----EDGNVYSACRHGNK----AG  255 (401)
Q Consensus       192 ----~i~~wd~~~---~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~----~d~~i~~~~~~~~~----~~  255 (401)
                          .|.+||+..   .... ....+... ...++...+..++|+ |+++.++...    .+..|++||..+.+    ..
T Consensus       225 ~~~~~l~v~d~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~ws-pdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~  302 (740)
T 4a5s_A          225 NPTVKFFVVNTDSLSSVTNA-TSIQITAPASMLIGDHYLCDVTWA-TQERISLQWLRRIQNYSVMDICDYDESSGRWNCL  302 (740)
T ss_dssp             CCEEEEEEEETTSCCSSSCC-CEEEECCCHHHHTSCEEEEEEEEE-ETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred             CCeeEEEEEECCCCCCCCcc-eEEEecCCccCCCCCeEEEEEEEe-CCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence                355666654   2100 11111100 001256678999999 7888666543    23469999987544    11


Q ss_pred             ceeee--cCCCCcee-----eeecCccCCCCCCCcEEE-EEeC-C--CeEEEEEeeCCCceEEEeecCCceEEEEECCCC
Q psy17342        256 NVECY--EGHEGPVV-----GLSSHRAQGHIDFSHLYL-TSSY-D--WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPIN  324 (401)
Q Consensus       256 ~~~~~--~~~~~~v~-----~i~~~~~~~~~~~~~~l~-s~~~-d--~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~  324 (401)
                      .+..+  .+|...|.     ...|+|+      ++.|+ ..+. +  ..|++||+..++.. .+......+..+.. +++
T Consensus       303 ~~~~l~~~~~~~~v~~~~~~~p~fspD------G~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~  374 (740)
T 4a5s_A          303 VARQHIEMSTTGWVGRFRPSEPHFTLD------GNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTS  374 (740)
T ss_dssp             GGGCEEEECSSSCSSSSSCCCCEECTT------SSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECS
T ss_pred             EEEEeeeccCCceEccCcCCCceEcCC------CCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeC
Confidence            12222  44665554     7889998      66665 5553 3  46888888765544 44444555665542 446


Q ss_pred             CcEEEEEec----CCEEEEE--eCCCCCCCcceEEe-ecCCCCeEEEEecCCCcEEEEEecC---CcEEEEEeccCc
Q psy17342        325 PALFATVEV----AGRVDLW--NLNLDTEVPATSAI-VEGAPALSRVTWTPNGTQLCVGDEK---GAITMFDVGEVG  391 (401)
Q Consensus       325 ~~~l~~~~~----d~~i~iw--d~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~d---g~v~iw~~~~~~  391 (401)
                      +.+++++..    .+...||  ++..+.....+... .........+.|||+|++++.....   ..+.+++..+++
T Consensus       375 ~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~  451 (740)
T 4a5s_A          375 DYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDK  451 (740)
T ss_dssp             SEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTE
T ss_pred             CEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCc
Confidence            556666654    2344444  44432211011000 0123467889999999987655433   357788877653

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.82  E-value=5e-18  Score=148.76  Aligned_cols=277  Identities=14%  Similarity=0.100  Sum_probs=172.7

Q ss_pred             EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-----cCCCeeEEEEeCCCCceEEEEec--CCe
Q psy17342         70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-----CQSPVLSCCFAKFNPYLILGGTY--SGQ  142 (401)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~g~~--dg~  142 (401)
                      .++|+|+|+++.++.........+..++.|.+||..+.+.+.++...     +......++++|++ ++|+++..  ++.
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg-~~l~v~n~~~~~~  132 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDG-KFIVLQNASPATS  132 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTS-SEEEEEEESSSEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCC-CEEEEECCCCCCe
Confidence            89999999999988732111111223678999999877766655543     12457789999988 55555543  588


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCc-eEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccc
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNA-HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA  221 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  221 (401)
                      |.+||+.+.+.....      ..+. ....+.+  .|++ ..+++.+.||.+.+|++...+.......... .......+
T Consensus       133 v~v~d~~~~~~~~~~------i~~~-~~~~v~~--~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~-~~~~~~~~  202 (361)
T 2oiz_A          133 IGIVDVAKGDYVEDV------TAAA-GCWSVIP--QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQ-MFSVKDDP  202 (361)
T ss_dssp             EEEEETTTTEEEEEE------GGGT-TEEEEEE--CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCC-CSCTTTSC
T ss_pred             EEEEECCCCcEEEEE------ecCC-CcceeEE--cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccc-eEcCCCCc
Confidence            999999887542110      1111 1222444  4443 6788889999999999864222210000000 00011111


Q ss_pred             eEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCC----------CceeeeecCccCCCCCCCcEEEEEe--
Q psy17342        222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHE----------GPVVGLSSHRAQGHIDFSHLYLTSS--  289 (401)
Q Consensus       222 v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~----------~~v~~i~~~~~~~~~~~~~~l~s~~--  289 (401)
                       ..+.++ +++..++..+.++.++++|+..........+....          .....++++|+.     +..+++..  
T Consensus       203 -~~~~~~-~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg-----~~lyv~~~~~  275 (361)
T 2oiz_A          203 -IFIAPA-LDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRAS-----GRMYVFMHPD  275 (361)
T ss_dssp             -BCSCCE-ECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTT-----TEEEEEEESS
T ss_pred             -eEEEec-ccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCC-----CeEEEEEccC
Confidence             122334 45667777778899999998654322222221100          111236788873     34444433  


Q ss_pred             --------CCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC--CCCcceEEeecCCC
Q psy17342        290 --------YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD--TEVPATSAIVEGAP  359 (401)
Q Consensus       290 --------~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~  359 (401)
                              ..+.|.+||+.+++.+.++..+.  +.+++|+|+|+ +|++++. +.|.+||..++  +.+..+   .....
T Consensus       276 ~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~-~l~v~n~-~~v~v~D~~t~~l~~~~~i---~~~G~  348 (361)
T 2oiz_A          276 GKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRN-LMLTLDG-GNVNVYDISQPEPKLLRTI---EGAAE  348 (361)
T ss_dssp             CCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTT-EEEEECS-SCEEEEECSSSSCEEEEEE---TTSCS
T ss_pred             CCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCC-EEEEeCC-CeEEEEECCCCcceeeEEe---ccCCC
Confidence                    13589999999999999998866  89999999998 6666665 99999999987  433222   24456


Q ss_pred             CeEEEEecCCCc
Q psy17342        360 ALSRVTWTPNGT  371 (401)
Q Consensus       360 ~v~~~~~s~~g~  371 (401)
                      ....++++|+|+
T Consensus       349 ~P~~~~~~p~G~  360 (361)
T 2oiz_A          349 ASLQVQFHPVGG  360 (361)
T ss_dssp             SEEEEEECCCSC
T ss_pred             CcEEEEecCCCC
Confidence            678899999985

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.81  E-value=1.1e-17  Score=160.96  Aligned_cols=287  Identities=8%  Similarity=0.043  Sum_probs=178.2

Q ss_pred             ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCC-----CeeEEEEeCCCCceEEEEecC-
Q psy17342         67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS-----PVLSCCFAKFNPYLILGGTYS-  140 (401)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~g~~d-  140 (401)
                      ...+++|+|+|+++++ +           |+.|++||+.+++....+ ..+..     ....++||||+ +.|+.++.+ 
T Consensus        18 ~~~~~~w~~dg~~~~~-~-----------~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Spdg-~~l~~~~~~~   83 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYK-Q-----------ENNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISPDG-QFILLEYNYV   83 (740)
T ss_dssp             CCCCEEECSSSEEEEE-E-----------TTEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECTTS-SEEEEEEEEE
T ss_pred             cccccEECCCCcEEEE-c-----------CCcEEEEECCCCceEEEE-echhhhhhcccccceEECCCC-CEEEEEECCe
Confidence            3668999999965554 4           689999999987754322 22221     23458999998 566666554 


Q ss_pred             --------CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccc
Q psy17342        141 --------GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY  212 (401)
Q Consensus       141 --------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~  212 (401)
                              +.+.+||+.+++..       .+..|...+...+|  +|+|+.|+.+. ++.|.+|++...........-..
T Consensus        84 ~~~r~~~~~~~~~~d~~~~~~~-------~l~~~~~~~~~~~~--SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~  153 (740)
T 4a5s_A           84 KQWRHSYTASYDIYDLNKRQLI-------TEERIPNNTQWVTW--SPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKE  153 (740)
T ss_dssp             ECSSSCEEEEEEEEETTTTEEC-------CSSCCCTTEEEEEE--CSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBT
T ss_pred             eeEEEccceEEEEEECCCCcEE-------EcccCCCcceeeEE--CCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCc
Confidence                    66789999987643       23567778999999  99999999885 67999999875332111110000


Q ss_pred             c-cccCCc---------cceEEEEeccCCCCeEEEEcCCc------------------------------------eEEE
Q psy17342        213 N-NKQTKN---------LAVLSLAFPQNDVNNFVVGCEDG------------------------------------NVYS  246 (401)
Q Consensus       213 ~-~~~~~~---------~~v~~~~~~~~~~~~l~~~~~d~------------------------------------~i~~  246 (401)
                      . ...++.         .....+.|+ ||++.|+.++.|.                                    .|++
T Consensus       154 ~~~~~g~~~~v~~ee~~~~~~~~~wS-pDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v  232 (740)
T 4a5s_A          154 DIIYNGITDWVYEEEVFSAYSALWWS-PNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV  232 (740)
T ss_dssp             TTEEESBCCHHHHHHTSSSSBCEEEC-TTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred             cceecCcccccccchhcCCCcceEEC-CCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE
Confidence            0 000111         122358899 8999988874221                                    4778


Q ss_pred             EeCCC---CCCCceeeec------CCCCceeeeecCccCCCCCCCcEEEEEeC----CCeEEEEEeeCCC----c--eEE
Q psy17342        247 ACRHG---NKAGNVECYE------GHEGPVVGLSSHRAQGHIDFSHLYLTSSY----DWSVKLWNIKENK----P--VHS  307 (401)
Q Consensus       247 ~~~~~---~~~~~~~~~~------~~~~~v~~i~~~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~----~--~~~  307 (401)
                      ||+.+   ........+.      +|...+..++|+|+      +++++....    +..|++||+.+++    +  +..
T Consensus       233 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspd------g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~  306 (740)
T 4a5s_A          233 VNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQ------ERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ  306 (740)
T ss_dssp             EETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEET------TEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC
T ss_pred             EECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCC------CeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE
Confidence            88875   3210122332      37778999999999      676665432    3479999999887    1  222


Q ss_pred             E--eecCCceE-----EEEECCCCCcEEEEEe-cC--CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEE-EE
Q psy17342        308 F--NEFRDYVM-----DVQWSPINPALFATVE-VA--GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLC-VG  376 (401)
Q Consensus       308 ~--~~~~~~v~-----~v~~~~~~~~~l~~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~  376 (401)
                      +  ..|...+.     ...|+|+|+.++...+ .+  ..|++||+..+.....    ..+...+..+.. +|++.|+ ++
T Consensus       307 l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~l----T~g~~~v~~~~~-~d~~~i~f~~  381 (740)
T 4a5s_A          307 HIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI----TKGTWEVIGIEA-LTSDYLYYIS  381 (740)
T ss_dssp             EEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEES----CCSSSCEEEEEE-ECSSEEEEEE
T ss_pred             eeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEec----ccCCEEEEEEEE-EeCCEEEEEE
Confidence            2  44555554     7899999985542444 34  4688888876543322    233444555432 4455554 44


Q ss_pred             ec----CCcEEEEEecc
Q psy17342        377 DE----KGAITMFDVGE  389 (401)
Q Consensus       377 ~~----dg~v~iw~~~~  389 (401)
                      ..    .+...||.+..
T Consensus       382 ~~~~~~~~~~~ly~v~~  398 (740)
T 4a5s_A          382 NEYKGMPGGRNLYKIQL  398 (740)
T ss_dssp             SCGGGCTTCBEEEEEET
T ss_pred             ecCCCCCceeEEEEEEC
Confidence            43    24456665543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.80  E-value=3.4e-17  Score=141.85  Aligned_cols=255  Identities=11%  Similarity=0.053  Sum_probs=178.8

Q ss_pred             CCCeeEEEEeCCCCceEEEEecC------------------------CeEEEEECCCCCCCceeeccccccCCCCcEEEE
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYS------------------------GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCM  173 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~d------------------------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  173 (401)
                      -+.+.+++++|++ +++++...+                        +.|.+||..+++.....     -..+-.....+
T Consensus        23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-----~~~~~~~p~gi   96 (329)
T 3fvz_A           23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS-----GKNLFYLPHGL   96 (329)
T ss_dssp             CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-----CTTTCSSEEEE
T ss_pred             cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-----CCCccCCceEE
Confidence            3679999999987 677777666                        47999998876643211     12444578899


Q ss_pred             EEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccc--ccccCCccceEEEEeccCCCCeEEEEc-CCceEEEEeCC
Q psy17342        174 SVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY--NNKQTKNLAVLSLAFPQNDVNNFVVGC-EDGNVYSACRH  250 (401)
Q Consensus       174 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~~~~~  250 (401)
                      ++  ++++.++++...++.|++|+..........+....  .....+...+..++++|.++.++++.+ .++.|++|+..
T Consensus        97 a~--d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~  174 (329)
T 3fvz_A           97 SI--DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS  174 (329)
T ss_dssp             EE--CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT
T ss_pred             EE--CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC
Confidence            99  89999888888899999999763211111110000  000123446889999933788888876 68999999964


Q ss_pred             CCCCCceeeecC----------CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee--cCCceEEE
Q psy17342        251 GNKAGNVECYEG----------HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE--FRDYVMDV  318 (401)
Q Consensus       251 ~~~~~~~~~~~~----------~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~v  318 (401)
                      +.   .+..+..          +-.....++++|+.     +.++++...+++|++||..+++.+..+..  +...+.++
T Consensus       175 g~---~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-----g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~  246 (329)
T 3fvz_A          175 GK---FVTQWGEESSGSSPRPGQFSVPHSLALVPHL-----DQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI  246 (329)
T ss_dssp             SC---EEEEECEECCSSSCCTTEESCEEEEEEETTT-----TEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred             CC---EEEEeccCCCCCCCCCcccCCCcEEEEECCC-----CEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence            32   3444431          22347899999874     57888888899999999988888888743  45678899


Q ss_pred             EECCCCCcEEEEEe-------cCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        319 QWSPINPALFATVE-------VAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       319 ~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      +++| + .++++.+       .+..|++||+.+++.+..+.....+...+..++++|+|.++++...++.|++|++...
T Consensus       247 ~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          247 SYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             eecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence            9999 3 2333332       3458999999888755443211234566899999999988888889999999999764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.80  E-value=5.2e-17  Score=142.32  Aligned_cols=273  Identities=10%  Similarity=0.038  Sum_probs=171.7

Q ss_pred             CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEe----------cCCeEEEEECCCCCCCceeeccccccC
Q psy17342         96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGT----------YSGQIVLWDTRVQKKTPVHRTPLSVMA  165 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~  165 (401)
                      |+.|.+||..+++.+..+..+ .. . .++|+|++ ++++++.          .++.|.+||..+.+........-....
T Consensus        30 d~~v~v~D~~t~~~~~~i~~g-~~-p-~i~~spdg-~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~  105 (361)
T 2oiz_A           30 ESRVHVYDYTNGKFLGMVPTA-FN-G-HVQVSNDG-KKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ  105 (361)
T ss_dssp             GCEEEEEETTTCCEEEEEECC-EE-E-EEEECTTS-SEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred             cCeEEEEECCCCeEEEEecCC-CC-C-ceEECCCC-CEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence            679999999887765444332 22 3 89999988 5555554          367899999987654322211000011


Q ss_pred             CCCcEEEEEEeecCCceEEEEEeC--CCcEEEeeccCCCCCccccc-cccccccCCccceEEEEeccCCCCeEEEEcCCc
Q psy17342        166 HTHPVFCMSVIGTQNAHNLISISN--DGRLCSWSLEMLSSPQETRD-LQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG  242 (401)
Q Consensus       166 ~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~  242 (401)
                      +......+++  +|++++|+++..  ++.|.+||+.+..   .... +..       .....+.+.|.....+++.+.||
T Consensus       106 ~g~~p~~i~~--spdg~~l~v~n~~~~~~v~v~d~~~~~---~~~~~i~~-------~~~~~v~~~p~~~~~~~~~~~dg  173 (361)
T 2oiz_A          106 GLNYDGLFRQ--TTDGKFIVLQNASPATSIGIVDVAKGD---YVEDVTAA-------AGCWSVIPQPNRPRSFMTICGDG  173 (361)
T ss_dssp             BCCCGGGEEE--CTTSSEEEEEEESSSEEEEEEETTTTE---EEEEEGGG-------TTEEEEEECTTSSSEEEEEETTS
T ss_pred             cCCCcceEEE--CCCCCEEEEECCCCCCeEEEEECCCCc---EEEEEecC-------CCcceeEEcCCCCeeEEEECCCC
Confidence            2344567888  999999998864  6799999998632   1111 111       11222445644456788888999


Q ss_pred             eEEEEeCCCCCCCce------eeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCce--EEEee----
Q psy17342        243 NVYSACRHGNKAGNV------ECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPV--HSFNE----  310 (401)
Q Consensus       243 ~i~~~~~~~~~~~~~------~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~----  310 (401)
                      .+.+++.... .+..      ..+..+..++ .+.+.|+      +..++..+.++.|.++|+...+..  ..+..    
T Consensus       174 ~~~~v~~~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~~~------g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~  245 (361)
T 2oiz_A          174 GLLTINLGED-GKVASQSRSKQMFSVKDDPI-FIAPALD------KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDE  245 (361)
T ss_dssp             SEEEEEECTT-SSEEEEEECCCCSCTTTSCB-CSCCEEC------SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHH
T ss_pred             cEEEEEECCC-CcEeeeccccceEcCCCCce-EEEeccc------CCEEEEEeCCCeEEEEEecCCCceecccccccCcc
Confidence            9998887532 1122      1122222222 2333454      455666678899999998754422  22211    


Q ss_pred             --cC----CceEEEEECCCCCcEEEEEe----------cCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEE
Q psy17342        311 --FR----DYVMDVQWSPINPALFATVE----------VAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLC  374 (401)
Q Consensus       311 --~~----~~v~~v~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  374 (401)
                        +.    .....++|+|+++.++++..          ..+.|.+||+.+.+.+..+.   .+ . +..++|+|||++|+
T Consensus       246 ~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~---~~-~-p~~ia~spdg~~l~  320 (361)
T 2oiz_A          246 DKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP---GR-D-ALSMTIDQQRNLML  320 (361)
T ss_dssp             HHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE---CT-T-CCEEEEETTTTEEE
T ss_pred             ccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe---cC-C-eeEEEECCCCCEEE
Confidence              00    11123789999875555544          13589999999887555443   22 3 89999999999999


Q ss_pred             EEecCCcEEEEEeccCccceeeee
Q psy17342        375 VGDEKGAITMFDVGEVGIACLKFI  398 (401)
Q Consensus       375 ~~~~dg~v~iw~~~~~~~~~l~~~  398 (401)
                      +++. +.|.+||..+++++.++++
T Consensus       321 v~n~-~~v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          321 TLDG-GNVNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             EECS-SCEEEEECSSSSCEEEEEE
T ss_pred             EeCC-CeEEEEECCCCcceeeEEe
Confidence            8887 9999999999865666664

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.79  E-value=4.7e-16  Score=132.00  Aligned_cols=247  Identities=10%  Similarity=0.086  Sum_probs=169.5

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-CCcEEEe
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-DGRLCSW  196 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~w  196 (401)
                      -..+.+++++|++ +++++...++.|.+||.... ........-....+...+..+++. .+++..+++... ++.|.+|
T Consensus        29 ~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~g~-~~~~~~~~~~~~~~~~~p~~i~~~-~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           29 FTEPSGVAVNAQN-DIIVADTNNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVV-RNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             BSCEEEEEECTTC-CEEEEEGGGTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEE-TTTTEEEEEECGGGCEEEEE
T ss_pred             cCCCceEEECCCC-CEEEEECCCCEEEEECCCCc-EEEEecccCCCcccccCceEEEEE-cCCCeEEEEcCCCCCEEEEE
Confidence            3568899999977 67777778899999998733 211111100112345678888872 256666666543 7899999


Q ss_pred             eccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec--CCCCceeeeecCc
Q psy17342        197 SLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE--GHEGPVVGLSSHR  274 (401)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~  274 (401)
                      +..  +.....+.      ..+...+..++++ ++++++++...++.|++|+....   .+..+.  .+...+.+++++|
T Consensus       106 d~~--g~~~~~~~------~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~g~---~~~~~~~~~~~~~p~~i~~~~  173 (286)
T 1q7f_A          106 NQY--GQFVRKFG------ATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQNGN---VLHKFGCSKHLEFPNGVVVND  173 (286)
T ss_dssp             CTT--SCEEEEEC------TTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECTTSC---EEEEEECTTTCSSEEEEEECS
T ss_pred             CCC--CcEEEEec------CccCCCceEEEEe-CCCCEEEEECCCCEEEEEcCCCC---EEEEeCCCCccCCcEEEEECC
Confidence            943  22211111      1133467899999 78888888788899999997532   344443  3445688999999


Q ss_pred             cCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeec--CCceEEEEECCCCCcEEEEEecCC-EEEEEeCCCCCCCcce
Q psy17342        275 AQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEF--RDYVMDVQWSPINPALFATVEVAG-RVDLWNLNLDTEVPAT  351 (401)
Q Consensus       275 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~v~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~  351 (401)
                      +      ++++++...++.|++||. .++.+..+..+  ...+.+++++|+|. ++++...++ .|.+||.. ++.+..+
T Consensus       174 ~------g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~-g~~~~~~  244 (286)
T 1q7f_A          174 K------QEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQD-GQLISAL  244 (286)
T ss_dssp             S------SEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTT-SCEEEEE
T ss_pred             C------CCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCC-CCEEEEE
Confidence            8      688888778999999997 46666666543  25788999999996 777777775 99999964 4433333


Q ss_pred             EEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        352 SAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       352 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      ... .....+..++++|+|+++++ +.++.|++|++...
T Consensus       245 ~~~-~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          245 ESK-VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EES-SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             ccc-CCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            221 12234779999999987776 57899999998654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.78  E-value=4.2e-16  Score=132.27  Aligned_cols=242  Identities=7%  Similarity=0.010  Sum_probs=168.3

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE-----ecCCCeeEEEEe-CCCCceEEEEe
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF-----FCQSPVLSCCFA-KFNPYLILGGT  138 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~-~~~~~~l~~g~  138 (401)
                      -..+.+++++|++..+++..          .++.|.+||.+ ++....+..     .+...+..+++. +++ .++++..
T Consensus        29 ~~~p~~v~~~~~g~l~v~~~----------~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~   96 (286)
T 1q7f_A           29 FTEPSGVAVNAQNDIIVADT----------NNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTER   96 (286)
T ss_dssp             BSCEEEEEECTTCCEEEEEG----------GGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEEC
T ss_pred             cCCCceEEECCCCCEEEEEC----------CCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCC-eEEEEcC
Confidence            35689999999997555555          58899999987 443322211     122468899995 544 6666653


Q ss_pred             c-CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccC
Q psy17342        139 Y-SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT  217 (401)
Q Consensus       139 ~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  217 (401)
                      . ++.|.+|+.. ++.....     ...+...+.++++  .+++..+++...++.|.+|+...  ........     ..
T Consensus        97 ~~~~~i~~~d~~-g~~~~~~-----~~~~~~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~g--~~~~~~~~-----~~  161 (286)
T 1q7f_A           97 SPTHQIQIYNQY-GQFVRKF-----GATILQHPRGVTV--DNKGRIIVVECKVMRVIIFDQNG--NVLHKFGC-----SK  161 (286)
T ss_dssp             GGGCEEEEECTT-SCEEEEE-----CTTTCSCEEEEEE--CTTSCEEEEETTTTEEEEECTTS--CEEEEEEC-----TT
T ss_pred             CCCCEEEEECCC-CcEEEEe-----cCccCCCceEEEE--eCCCCEEEEECCCCEEEEEcCCC--CEEEEeCC-----CC
Confidence            3 7899999943 3322111     0234457889999  88998888888889999999642  21111111     12


Q ss_pred             CccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCC--CCceeeeecCccCCCCCCCcEEEEEeCCC-eE
Q psy17342        218 KNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGH--EGPVVGLSSHRAQGHIDFSHLYLTSSYDW-SV  294 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~~~~~~l~s~~~d~-~i  294 (401)
                      +...+..++++ ++++++++...++.|++|+....   .+..+..+  ...+..++++|+      ++++++...++ .|
T Consensus       162 ~~~~p~~i~~~-~~g~l~v~~~~~~~i~~~~~~g~---~~~~~~~~g~~~~p~~i~~d~~------G~l~v~~~~~~~~i  231 (286)
T 1q7f_A          162 HLEFPNGVVVN-DKQEIFISDNRAHCVKVFNYEGQ---YLRQIGGEGITNYPIGVGINSN------GEILIADNHNNFNL  231 (286)
T ss_dssp             TCSSEEEEEEC-SSSEEEEEEGGGTEEEEEETTCC---EEEEESCTTTSCSEEEEEECTT------CCEEEEECSSSCEE
T ss_pred             ccCCcEEEEEC-CCCCEEEEECCCCEEEEEcCCCC---EEEEEccCCccCCCcEEEECCC------CCEEEEeCCCCEEE
Confidence            33468899999 78888888788999999997543   34445433  356789999998      78888887776 99


Q ss_pred             EEEEeeCCCceEEEeecCC--ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342        295 KLWNIKENKPVHSFNEFRD--YVMDVQWSPINPALFATVEVAGRVDLWNLNLDT  346 (401)
Q Consensus       295 ~iwd~~~~~~~~~~~~~~~--~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~  346 (401)
                      .+||. +++.+..+..+..  .+.+++++|+|. ++++ +.|+.|++|++....
T Consensus       232 ~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          232 TIFTQ-DGQLISALESKVKHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             EEECT-TSCEEEEEEESSCCSCEEEEEEETTTE-EEEE-ETTTEEEEEECSCCC
T ss_pred             EEECC-CCCEEEEEcccCCCCcceeEEECCCCc-EEEE-CCCCeEEEEEccccc
Confidence            99995 5677777766433  477999999996 6666 569999999987543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.77  E-value=7.5e-17  Score=139.70  Aligned_cols=269  Identities=10%  Similarity=-0.005  Sum_probs=175.8

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCC---------------CCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCC
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKE---------------APNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFN  130 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~---------------~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  130 (401)
                      ..+.+++++|+|+.+++... ....               .....++.|.+||..+++........+-..+..++++|++
T Consensus        24 ~~v~~va~d~~G~l~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRG-DHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECT-TCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             CCceEEEECCCCCEEEEeCC-CCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            56999999999976665551 1000               0000125799999987765432221233578999999987


Q ss_pred             CceEEEEecCCeEEEEECCCCC-CCceeeccc---cccCCCCcEEEEEEeecC-CceEEEEEe-CCCcEEEeeccCCCCC
Q psy17342        131 PYLILGGTYSGQIVLWDTRVQK-KTPVHRTPL---SVMAHTHPVFCMSVIGTQ-NAHNLISIS-NDGRLCSWSLEMLSSP  204 (401)
Q Consensus       131 ~~~l~~g~~dg~v~iw~~~~~~-~~~~~~~~~---~~~~~~~~v~~~~~~~~~-~~~~l~s~~-~dg~i~~wd~~~~~~~  204 (401)
                       +++++...++.|++|+..... .........   .-..+-.....+++  ++ ++..+++.+ .++.|++|+..  +..
T Consensus       103 -~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~--~~~~g~lyv~d~~~~~~I~~~~~~--g~~  177 (329)
T 3fvz_A          103 -NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAV--EPSTGAVFVSDGYCNSRIVQFSPS--GKF  177 (329)
T ss_dssp             -CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEE--CTTTCCEEEEECSSCCEEEEECTT--SCE
T ss_pred             -CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEE--eCCCCeEEEEeCCCCCeEEEEcCC--CCE
Confidence             588888888999999986542 111110000   00234456889999  88 777777776 68999999954  222


Q ss_pred             cccccccccc---ccCCccceEEEEeccCC-CCeEEEEcCCceEEEEeCCCCCCCceeee--cCCCCceeeeecCccCC-
Q psy17342        205 QETRDLQYNN---KQTKNLAVLSLAFPQND-VNNFVVGCEDGNVYSACRHGNKAGNVECY--EGHEGPVVGLSSHRAQG-  277 (401)
Q Consensus       205 ~~~~~~~~~~---~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~-  277 (401)
                      ...+......   ...+-..+..++++ ++ +.++++...++.|++|+...  .+.+..+  ..+...+..++++|... 
T Consensus       178 ~~~~~~~g~~~~~~~~~~~~p~gia~d-~~~g~l~v~d~~~~~I~~~~~~~--G~~~~~~~~~~~~~~~~~~~~~pg~~~  254 (329)
T 3fvz_A          178 VTQWGEESSGSSPRPGQFSVPHSLALV-PHLDQLCVADRENGRIQCFKTDT--KEFVREIKHASFGRNVFAISYIPGFLF  254 (329)
T ss_dssp             EEEECEECCSSSCCTTEESCEEEEEEE-TTTTEEEEEETTTTEEEEEETTT--CCEEEEECCTTTTTCEEEEEEETTEEE
T ss_pred             EEEeccCCCCCCCCCcccCCCcEEEEE-CCCCEEEEEECCCCEEEEEECCC--CcEEEEEeccccCCCcceeeecCCEEE
Confidence            2211110000   01123457899999 56 77888888899999999872  3345555  34566788888888200 


Q ss_pred             CCCCCcEEEEEeCCCeEEEEEeeCCCceEEEe---ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342        278 HIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN---EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD  345 (401)
Q Consensus       278 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~  345 (401)
                      ..+ ++.+++...+..|++||..+++.+..+.   .+...+.+++++|+| .++++...++.|++|++...
T Consensus       255 ~~~-g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          255 AVN-GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EEE-CCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSCCEEEEEEEEC
T ss_pred             EeC-CCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCCEEEEEeCCcc
Confidence            000 2333333345689999999999888874   456678999999999 58899989999999998753

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.77  E-value=7e-17  Score=153.71  Aligned_cols=297  Identities=7%  Similarity=-0.042  Sum_probs=181.1

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCee---------EEEEe--CCCCc
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVL---------SCCFA--KFNPY  132 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~  132 (401)
                      |...+..++|++++-.++...        .+.++...||....+... .....+...+.         ...|+  |++..
T Consensus        22 ~~~~~~~~~~s~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~   92 (662)
T 3azo_A           22 RSGRPACVGAVGDEVWWVAPR--------PAEAGRATLVRRRADGAE-ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGP   92 (662)
T ss_dssp             TCSCCEEEEEETTEEEEEEEE--------TTTTTEEEEEEECTTSCE-EESSCTTCCBCCCGGGTCCCCEEEECCSSSSC
T ss_pred             cCCccceeEEcCCeEEEEecC--------cccCCcEEEEEECCCCCc-ceeCCCCccccccccccCCccceeeeecCCCe
Confidence            567899999998754444442        014788999986433322 22223344555         56666  98866


Q ss_pred             -eEEEEecCCeEEEEECC--C-CCCCceeeccccccC-----CCCcEEEEEEeecCCceEEEEEeCC----------CcE
Q psy17342        133 -LILGGTYSGQIVLWDTR--V-QKKTPVHRTPLSVMA-----HTHPVFCMSVIGTQNAHNLISISND----------GRL  193 (401)
Q Consensus       133 -~l~~g~~dg~v~iw~~~--~-~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~d----------g~i  193 (401)
                       ++++...+..|.++++.  . +...       .+..     |...+.+++|  +|+|+.|++++.+          ..|
T Consensus        93 ~la~~~~~~~~l~~~~~~~~g~~~~~-------~l~~~~~~~~~~~~~~~~~--spDg~~l~~~~~~~~~~~~~~~~~~i  163 (662)
T 3azo_A           93 LLVFTHFGDQRLYAFEPDAPGGAVPR-------PLTPVSAVGGGLRWADPVL--LPERGEVWCMAEEFTGEGPSDVRRFL  163 (662)
T ss_dssp             EEEEEBTTTCCEEEECTTSTTCCCCE-------ECSCCCCSTTCEEEEEEEE--ETTTTEEEEEEEEECSSSTTCEEEEE
T ss_pred             EEEEEECCCCeEEEEcCCCCCCCCCE-------eccCCccCCCCccccCcEE--CCCCCEEEEEEecccCCCCCCceeEE
Confidence             45444445667777765  2 3321       1122     6677889999  9999999998877          579


Q ss_pred             EEeeccCCCCC--ccccccccccccCCccceEEEEeccCCCCeEEEEcCC--------ceEEEEeCCC-CCC-Cceeeec
Q psy17342        194 CSWSLEMLSSP--QETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED--------GNVYSACRHG-NKA-GNVECYE  261 (401)
Q Consensus       194 ~~wd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~~~~~~~-~~~-~~~~~~~  261 (401)
                      .+||+......  .....+.    ..+...+..++|+ ||++.|+.++.+        ..|++||+.. ... .......
T Consensus       164 ~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~S-pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~  238 (662)
T 3azo_A          164 AAVPLDGSAAADRSAVRELS----DDAHRFVTGPRLS-PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG  238 (662)
T ss_dssp             EEEETTSTTTTCGGGSEESS----CSCSSEECCCEEC-TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred             EEEECCCCccccCCceeEEE----ecCCCcccCceEC-CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence            99998751000  1111111    0234567788999 899999877744        4799999873 311 2233334


Q ss_pred             CCCCceeeeecCccCCCCCCCcEEEEEeCCC--eEEEEEeeCCCceEEEeecCCc--------eEEEEECCCCCcEEEEE
Q psy17342        262 GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW--SVKLWNIKENKPVHSFNEFRDY--------VMDVQWSPINPALFATV  331 (401)
Q Consensus       262 ~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~--------v~~v~~~~~~~~~l~~~  331 (401)
                      +|...+..+.|+|+      ++++++++.++  .|.+||+.+++.......+...        +..++|+|++. +++++
T Consensus       239 ~~~~~~~~~~~spd------g~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~  311 (662)
T 3azo_A          239 GPEEAIAQAEWAPD------GSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVH  311 (662)
T ss_dssp             ETTBCEEEEEECTT------SCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEE
T ss_pred             CCCceEcceEECCC------CeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCE-EEEEE
Confidence            45788999999999      67888888888  5666666555543322222221        46788999987 78888


Q ss_pred             ecCCEEEEE--eCCCCCCCcceEEeecCCCCeEEE-EecCCCcEEEEEecCCc--EEEEEeccCcccee
Q psy17342        332 EVAGRVDLW--NLNLDTEVPATSAIVEGAPALSRV-TWTPNGTQLCVGDEKGA--ITMFDVGEVGIACL  395 (401)
Q Consensus       332 ~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~~~~~dg~--v~iw~~~~~~~~~l  395 (401)
                      +. +.++||  |+.+++ ...   ...+...+..+ +++.+.-++++++.+..  |+++|+.+++.+.+
T Consensus       312 ~~-~~~~l~~~d~~~~~-~~~---l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l  375 (662)
T 3azo_A          312 GK-GAAVLGILDPESGE-LVD---AAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI  375 (662)
T ss_dssp             BS-SSCEEEEEETTTTE-EEE---CCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred             Ec-CccEEEEEECCCCc-EEE---ecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence            88 999999  544433 222   22344556666 44433333444555544  55556656654444

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.77  E-value=4e-15  Score=136.91  Aligned_cols=301  Identities=17%  Similarity=0.200  Sum_probs=193.3

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCc--CCCCCceEEEecCCCeeEEEEe----CCCCceEEEEec
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTK--FKKTTPEFEFFCQSPVLSCCFA----KFNPYLILGGTY  139 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~--~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~g~~  139 (401)
                      ..+..+.|+|+|+++++++          .++.|.+||+.  +.+.+.++  ........++|+    |+++.++++...
T Consensus       197 ~~p~~v~~SpDGr~lyv~~----------~dg~V~viD~~~~t~~~v~~i--~~G~~P~~ia~s~~~~pDGk~l~v~n~~  264 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIG----------RDGKVNMIDLWMKEPTTVAEI--KIGSEARSIETSKMEGWEDKYAIAGAYW  264 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEE----------TTSEEEEEETTSSSCCEEEEE--ECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred             CCccceEECCCCCEEEEEc----------CCCeEEEEECCCCCCcEeEEE--ecCCCCceeEEccccCCCCCEEEEEEcc
Confidence            4577899999999999988          78999999995  55544333  333457899999    688666666667


Q ss_pred             CCeEEEEECCCCCCCceeecc-cccc---CCCC-cEEEEEEeecCCc-eEEEEEeCCCcEEEeeccCCCCCccccccccc
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTP-LSVM---AHTH-PVFCMSVIGTQNA-HNLISISNDGRLCSWSLEMLSSPQETRDLQYN  213 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~-~~~~---~~~~-~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~  213 (401)
                      +++|.++|..+.+........ ....   .|.. .+..+..  ++++ ..++....+|.|.++|....... ....+.  
T Consensus       265 ~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~--s~~~~~~vv~~~~~g~v~~vd~~~~~~~-~v~~i~--  339 (567)
T 1qks_A          265 PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA--SHYRPEFIVNVKETGKILLVDYTDLNNL-KTTEIS--  339 (567)
T ss_dssp             TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE--CSSSSEEEEEETTTTEEEEEETTCSSEE-EEEEEE--
T ss_pred             CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE--cCCCCEEEEEecCCCeEEEEecCCCccc-eeeeee--
Confidence            799999998776644322210 0001   1222 5667766  5554 45556667799999998642211 111111  


Q ss_pred             cccCCccceEEEEeccCCCCeEEEEc-CCceEEEEeCCCCCCCceeeecC-----CCCceeeee-cCccCCCCCCCcEEE
Q psy17342        214 NKQTKNLAVLSLAFPQNDVNNFVVGC-EDGNVYSACRHGNKAGNVECYEG-----HEGPVVGLS-SHRAQGHIDFSHLYL  286 (401)
Q Consensus       214 ~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~-----~~~~v~~i~-~~~~~~~~~~~~~l~  286 (401)
                          .......+.|+ +++++++++. .++.|.++|....+  .+.....     |.+  .... ++|..     +.+++
T Consensus       340 ----~~~~~~d~~~~-pdgr~~~va~~~sn~V~ViD~~t~k--l~~~i~vgg~~Phpg--~g~~~~~p~~-----g~v~~  405 (567)
T 1qks_A          340 ----AERFLHDGGLD-GSHRYFITAANARNKLVVIDTKEGK--LVAIEDTGGQTPHPG--RGANFVHPTF-----GPVWA  405 (567)
T ss_dssp             ----CCSSEEEEEEC-TTSCEEEEEEGGGTEEEEEETTTTE--EEEEEECSSSSBCCT--TCEEEEETTT-----EEEEE
T ss_pred             ----ccccccCceEC-CCCCEEEEEeCCCCeEEEEECCCCc--EEEEEeccCcCCCCc--cceeeECCCC-----CcEEE
Confidence                22345678899 7888876654 67889999998543  3333322     322  1222 46653     45666


Q ss_pred             EEe-CCCeEEEEEeeC-------CCceEEEeecCCceEEEEECCCCCcEEEEEec------CCEEEEEeCCCCCC---Cc
Q psy17342        287 TSS-YDWSVKLWNIKE-------NKPVHSFNEFRDYVMDVQWSPINPALFATVEV------AGRVDLWNLNLDTE---VP  349 (401)
Q Consensus       287 s~~-~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~---~~  349 (401)
                      ++. .+++|.++|..+       .+.+.++......-..+..+|+++++.+....      .+.|.++|+.+.+.   ..
T Consensus       406 t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~  485 (567)
T 1qks_A          406 TSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDP  485 (567)
T ss_dssp             EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCC
T ss_pred             eCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCC
Confidence            664 468999999987       56777777644443457899999855443311      45999999987611   11


Q ss_pred             ceEEe-e-------cCCCCeEEEEecCCCcEEEEEe-----cCCcEEEEEeccCccceeeeee
Q psy17342        350 ATSAI-V-------EGAPALSRVTWTPNGTQLCVGD-----EKGAITMFDVGEVGIACLKFIT  399 (401)
Q Consensus       350 ~~~~~-~-------~~~~~v~~~~~s~~g~~l~~~~-----~dg~v~iw~~~~~~~~~l~~~~  399 (401)
                      .+... .       .....+..+.|+|+|+.+..+.     .++.|.|+|.++.+  .+++++
T Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~--~~~~i~  546 (567)
T 1qks_A          486 EFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE--LKHVIK  546 (567)
T ss_dssp             CEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE--EEEEEC
T ss_pred             CcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce--EEEEeC
Confidence            11111 1       1245789999999999887663     36899999999874  444443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.77  E-value=4.6e-18  Score=151.38  Aligned_cols=281  Identities=9%  Similarity=-0.037  Sum_probs=171.5

Q ss_pred             ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCC-eeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSP-VLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      .+.+++|+|+|++|+.+...       ..+..|.+||+.+++...  ...+... ...+.|+|++ +.|+..+.++.|.+
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~-------~g~~~l~~~d~~~~~~~~--l~~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~  106 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDF-------DGNRNYYLLNLETQQAVQ--LTEGKGDNTFGGFISTDE-RAFFYVKNELNLMK  106 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECT-------TSSCEEEEEETTTTEEEE--CCCSSCBCTTTCEECTTS-SEEEEEETTTEEEE
T ss_pred             eeecCcCCCCCCEEEEEEec-------CCCceEEEEECCCCcEEE--eecCCCCccccceECCCC-CEEEEEEcCCcEEE
Confidence            36778999999999888721       123478888988654321  1222223 3347899988 56666667889999


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEE-------------------EEEeecCCceEEEEE-----eCCCcEEEeeccCC
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFC-------------------MSVIGTQNAHNLISI-----SNDGRLCSWSLEML  201 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~~l~s~-----~~dg~i~~wd~~~~  201 (401)
                      |++.+++......      .+......                   +.|  +|+++.++..     ..+..|.+||+...
T Consensus       107 ~d~~~~~~~~~~~------~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~--spdg~~~~~~~~~~~~~~~~l~~~d~~~g  178 (396)
T 3c5m_A          107 VDLETLEEQVIYT------VDEEWKGYGTWVANSDCTKLVGIEILKRDW--QPLTSWEKFAEFYHTNPTCRLIKVDIETG  178 (396)
T ss_dssp             EETTTCCEEEEEE------CCTTEEEEEEEEECTTSSEEEEEEEEGGGC--CCCCSHHHHHHHHHTCCCEEEEEEETTTC
T ss_pred             EECCCCCcEEEEe------cccccCCCCCEEEeccCCcccccccccccc--CCCCcceeeeeeccCCCcceEEEEECCCC
Confidence            9998776432221      12221111                   122  4555555443     35567888988652


Q ss_pred             CCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC------ceEEEEeCCCCCCCceeeecCC--CCceeeeecC
Q psy17342        202 SSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED------GNVYSACRHGNKAGNVECYEGH--EGPVVGLSSH  273 (401)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~~~~~~~~~~~~~~~~~~~--~~~v~~i~~~  273 (401)
                       .....   .     .+...+..+.|+|.++..|+..+.+      ..|++++..+..   ...+..+  ...+..+.|+
T Consensus       179 -~~~~~---~-----~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~s  246 (396)
T 3c5m_A          179 -ELEVI---H-----QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN---VRKIKEHAEGESCTHEFWI  246 (396)
T ss_dssp             -CEEEE---E-----EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---CEESSCCCTTEEEEEEEEC
T ss_pred             -cEEee---c-----cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc---eeEeeccCCCccccceEEC
Confidence             11111   1     1445688999993277766665543      358888876433   2222223  2357889999


Q ss_pred             ccCCCCCCCcEEEEEeCC-----CeEEEEEeeCCCceEEEeecCCceEEEEECC-CCCcEEEEEe---------------
Q psy17342        274 RAQGHIDFSHLYLTSSYD-----WSVKLWNIKENKPVHSFNEFRDYVMDVQWSP-INPALFATVE---------------  332 (401)
Q Consensus       274 ~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~l~~~~---------------  332 (401)
                      |+      ++.|+..+.+     +.|++||+.+++..... .... .. +.|+| +|+ +++.++               
T Consensus       247 pd------g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~-~~-~~~s~~dg~-~l~~~~~~~p~~~~~~~~~~~  316 (396)
T 3c5m_A          247 PD------GSAMAYVSYFKGQTDRVIYKANPETLENEEVM-VMPP-CS-HLMSNFDGS-LMVGDGCDAPVDVADADSYNI  316 (396)
T ss_dssp             TT------SSCEEEEEEETTTCCEEEEEECTTTCCEEEEE-ECCS-EE-EEEECSSSS-EEEEEECCC----------CC
T ss_pred             CC------CCEEEEEecCCCCccceEEEEECCCCCeEEee-eCCC-CC-CCccCCCCc-eEEEecCCcceeecccccccc
Confidence            98      6766666543     45999999877654332 2222 33 89999 998 566543               


Q ss_pred             -cCCEEEEEeCCCCCCCcceEEeecCCC-----------CeEEEEecCCCcEEEEEec-CCcEEEEE--eccCc
Q psy17342        333 -VAGRVDLWNLNLDTEVPATSAIVEGAP-----------ALSRVTWTPNGTQLCVGDE-KGAITMFD--VGEVG  391 (401)
Q Consensus       333 -~d~~i~iwd~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~g~~l~~~~~-dg~v~iw~--~~~~~  391 (401)
                       .+..|++||+.+++.. .+.   .+..           .+..++|+|||+.|+..+. ++...+|.  +.++.
T Consensus       317 ~~~~~i~~~d~~~~~~~-~l~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~  386 (396)
T 3c5m_A          317 ENDPFLYVLNTKAKSAQ-KLC---KHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY  386 (396)
T ss_dssp             CCCCEEEEEETTTTBCC-EEE---ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred             CCCCcEEEEecccCceE-Ecc---CCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence             3478999999876543 222   2222           2566889999998877664 55555554  44554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.75  E-value=4.2e-16  Score=135.37  Aligned_cols=273  Identities=10%  Similarity=0.090  Sum_probs=178.9

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      ..|.+++|+|++..++..+          .++.++.|.-   +... ....+...+.+++|+|++ ++++++..++.|.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~   70 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPII----------SESELQTITA---EPWL-EISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFK   70 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCC----------CGGGSCEEEC---EEEE-EEESSCCCEEEEEECTTS-CEEEEETTTCEEEE
T ss_pred             cccceeeecCCccceeEEe----------ecccCccccc---ceeE-EEeccCccccCcEECCCC-CEEEEECCCCEEEE
Confidence            4477888999887776665          5888888832   2221 122345677999999977 57778888899999


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC----CcEEEeeccCCCCCccccccccccccCCccc
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND----GRLCSWSLEMLSSPQETRDLQYNNKQTKNLA  221 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  221 (401)
                      ||..+++....      ...+...+.++++  ++++.++++...+    +.|.+||..... ......  .   ......
T Consensus        71 ~d~~~~~~~~~------~~~~~~~~~~i~~--~~dg~l~v~~~~~~~~~~~i~~~d~~~~~-~~~~~~--~---~~~~~~  136 (333)
T 2dg1_A           71 INPETKEIKRP------FVSHKANPAAIKI--HKDGRLFVCYLGDFKSTGGIFAATENGDN-LQDIIE--D---LSTAYC  136 (333)
T ss_dssp             ECTTTCCEEEE------EECSSSSEEEEEE--CTTSCEEEEECTTSSSCCEEEEECTTSCS-CEEEEC--S---SSSCCC
T ss_pred             EeCCCCcEEEE------eeCCCCCcceEEE--CCCCcEEEEeCCCCCCCceEEEEeCCCCE-EEEEEc--c---CccCCc
Confidence            99987654321      1235578999999  8899888877666    689999986522 111111  0   113456


Q ss_pred             eEEEEeccCCCCeEEEEcC------CceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCc-EEEEEeCCCeE
Q psy17342        222 VLSLAFPQNDVNNFVVGCE------DGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSH-LYLTSSYDWSV  294 (401)
Q Consensus       222 v~~~~~~~~~~~~l~~~~~------d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~-~l~s~~~d~~i  294 (401)
                      +..++++ +++.++++...      .+.|+.++.....   ...+..+...+..++|+|+      ++ ++++.+.++.|
T Consensus       137 ~~~i~~d-~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~i~~~~d------g~~l~v~~~~~~~i  206 (333)
T 2dg1_A          137 IDDMVFD-SKGGFYFTDFRGYSTNPLGGVYYVSPDFRT---VTPIIQNISVANGIALSTD------EKVLWVTETTANRL  206 (333)
T ss_dssp             EEEEEEC-TTSCEEEEECCCBTTBCCEEEEEECTTSCC---EEEEEEEESSEEEEEECTT------SSEEEEEEGGGTEE
T ss_pred             ccceEEC-CCCCEEEEeccccccCCCceEEEEeCCCCE---EEEeecCCCcccceEECCC------CCEEEEEeCCCCeE
Confidence            8899999 67877666553      3667777765322   2223233345788999998      56 44555567899


Q ss_pred             EEEEeeC-CCceEEEe-----ec--CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeec---CCCCeEE
Q psy17342        295 KLWNIKE-NKPVHSFN-----EF--RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVE---GAPALSR  363 (401)
Q Consensus       295 ~iwd~~~-~~~~~~~~-----~~--~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~v~~  363 (401)
                      .+||+.+ ++.+..+.     ..  ...+..++++++|. ++++...++.|.+||.. ++....+.....   +...+.+
T Consensus       207 ~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~  284 (333)
T 2dg1_A          207 HRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTH  284 (333)
T ss_dssp             EEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCE
T ss_pred             EEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCC-EEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcce
Confidence            9999964 44332221     11  13678899999997 67777678899999984 443333321100   0115889


Q ss_pred             EEecCCCcEEEEEecC
Q psy17342        364 VTWTPNGTQLCVGDEK  379 (401)
Q Consensus       364 ~~~s~~g~~l~~~~~d  379 (401)
                      ++|+|+++.|++++.+
T Consensus       285 ~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          285 PQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEECTTSCEEEEEEEC
T ss_pred             EEECCCCCEEEEEeCc
Confidence            9999998777766655

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.74  E-value=2.1e-16  Score=140.25  Aligned_cols=243  Identities=12%  Similarity=0.066  Sum_probs=153.2

Q ss_pred             EEEeCCCCceEEEEecCC--eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCC
Q psy17342        124 CCFAKFNPYLILGGTYSG--QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEML  201 (401)
Q Consensus       124 ~~~~~~~~~~l~~g~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~  201 (401)
                      .+|+|++..+++++..++  .|.+||+.+++....      ...+...+..+.|  +|+++.|+.++.++.|.+||+...
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l------t~~~~~~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~g  112 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL------TEGRGDNTFGGFL--SPDDDALFYVKDGRNLMRVDLATL  112 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC------CCSSCBCSSSCEE--CTTSSEEEEEETTTEEEEEETTTC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe------eeCCCCCccceEE--cCCCCEEEEEeCCCeEEEEECCCC
Confidence            789999855555544367  488888877654321      2344444445678  999999999999999999999863


Q ss_pred             CCCccccccccccccCCccceEEE--EeccCCCCeEEEE----------------------cCCceEEEEeCCCCCCCce
Q psy17342        202 SSPQETRDLQYNNKQTKNLAVLSL--AFPQNDVNNFVVG----------------------CEDGNVYSACRHGNKAGNV  257 (401)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~~~----------------------~~d~~i~~~~~~~~~~~~~  257 (401)
                      . .......       +...+...  .++ +++..++..                      ..+..|++||+....   .
T Consensus       113 ~-~~~~~~~-------~~~~~~~~~~~~~-~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~---~  180 (388)
T 3pe7_A          113 E-ENVVYQV-------PAEWVGYGTWVAN-SDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE---S  180 (388)
T ss_dssp             C-EEEEEEC-------CTTEEEEEEEEEC-TTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC---E
T ss_pred             c-ceeeeec-------hhhcccccceeEC-CCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc---e
Confidence            2 2222111       22223222  346 777777642                      244779999987543   3


Q ss_pred             eeecCCCCceeeeecCc-cCCCCCCCcEEEEEeCC------CeEEEEEeeCCCceEEEeecC--CceEEEEECCCCCcEE
Q psy17342        258 ECYEGHEGPVVGLSSHR-AQGHIDFSHLYLTSSYD------WSVKLWNIKENKPVHSFNEFR--DYVMDVQWSPINPALF  328 (401)
Q Consensus       258 ~~~~~~~~~v~~i~~~~-~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~--~~v~~v~~~~~~~~~l  328 (401)
                      ..+..+...+..+.|+| +      ++.|+....+      ..|.++|...++ ...+..+.  ..+..++|+|+|+.++
T Consensus       181 ~~l~~~~~~~~~~~~sp~d------g~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~  253 (388)
T 3pe7_A          181 TVILQENQWLGHPIYRPYD------DSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGSALV  253 (388)
T ss_dssp             EEEEEESSCEEEEEEETTE------EEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSSCEE
T ss_pred             EEeecCCccccccEECCCC------CCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCCEEE
Confidence            44445667789999999 7      6777776653      367777765443 34444433  3578899999998554


Q ss_pred             EEEecCC----EEEEEeCCCCCCCcceEEeecCC----CCeEEEEecCCCcEEEEE---------ecCCcEEEEEeccCc
Q psy17342        329 ATVEVAG----RVDLWNLNLDTEVPATSAIVEGA----PALSRVTWTPNGTQLCVG---------DEKGAITMFDVGEVG  391 (401)
Q Consensus       329 ~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~----~~v~~~~~s~~g~~l~~~---------~~dg~v~iw~~~~~~  391 (401)
                      +.+..++    .|++||+.+++.......  ...    .....++|+|||+.|+..         ..+..|++||+.+++
T Consensus       254 ~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (388)
T 3pe7_A          254 YVSYLKGSPDRFIYSADPETLENRQLTSM--PACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT  331 (388)
T ss_dssp             EEEEETTCCCEEEEEECTTTCCEEEEEEE--CCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred             EEecCCCCCcceEEEEecCCCceEEEEcC--CCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence            4444332    399999998764322221  110    001123799999988754         446689999999876


Q ss_pred             ccee
Q psy17342        392 IACL  395 (401)
Q Consensus       392 ~~~l  395 (401)
                      .+.+
T Consensus       332 ~~~l  335 (388)
T 3pe7_A          332 QHRV  335 (388)
T ss_dssp             EEEE
T ss_pred             eEEe
Confidence            5443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.74  E-value=6e-16  Score=135.18  Aligned_cols=272  Identities=9%  Similarity=0.007  Sum_probs=170.3

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC--C--
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS--G--  141 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d--g--  141 (401)
                      ..+...++  +|+.++...... .......++.|.+||+.+++..   .+   ..+..++|+|++..++++....  +  
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~---~l---~~~~~~~~SpDg~~la~~~~~~~~~~~   85 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKA-NLKDNKYENTIVIENLKNNARR---FI---ENATMPRISPDGKKIAFMRANEEKKVS   85 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEE-ETTTTEEEEEEEEEETTTCCEE---EE---ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred             EEcccceE--CCcEEEEEEeec-CcccCCccceEEEEeCCCCceE---Ec---ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence            45777888  888887764211 0001112678999999876532   12   5688999999985444443322  3  


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC---------------------------CcEE
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND---------------------------GRLC  194 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------------------------g~i~  194 (401)
                      .|.+|++.+++....       ..+.. +..++|  +|+++.|+.++.+                           ..|.
T Consensus        86 ~l~~~~~~~g~~~~l-------~~~~~-~~~~~w--spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  155 (347)
T 2gop_A           86 EIWVADLETLSSKKI-------LEAKN-IRSLEW--NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFW  155 (347)
T ss_dssp             EEEEEETTTTEEEEE-------EEESE-EEEEEE--CTTSSEEEEEEECCCC---------CCCC---------CEEEEE
T ss_pred             eEEEEECCCCceEEE-------EcCCC-ccceeE--CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEE
Confidence            377778876553221       12223 889999  9999988887642                           4688


Q ss_pred             EeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC---------ceEEEEeCCCCCCCceeeecCCCC
Q psy17342        195 SWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED---------GNVYSACRHGNKAGNVECYEGHEG  265 (401)
Q Consensus       195 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------~~i~~~~~~~~~~~~~~~~~~~~~  265 (401)
                      +||+.... .  ...+.     . . .+..++|+ +++ +++++..+         ..|++++  ..   ....+..+ .
T Consensus       156 ~~d~~~~~-~--~~~l~-----~-~-~~~~~~~s-pdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~---~~~~l~~~-~  217 (347)
T 2gop_A          156 IFDTESEE-V--IEEFE-----K-P-RFSSGIWH-RDK-IVVNVPHREIIPQYFKFWDIYIWE--DG---KEEKMFEK-V  217 (347)
T ss_dssp             EEETTTTE-E--EEEEE-----E-E-TTCEEEEE-TTE-EEEEEECCCSSCCSSCCEEEEEEE--TT---EEEEEEEE-E
T ss_pred             EEECCCCe-E--Eeeec-----C-C-CcccccCC-CCe-EEEEEecccccccccccccEEEeC--CC---ceEEeccC-c
Confidence            88886421 1  01111     1 2 67788999 788 77766543         2455555  22   23333334 4


Q ss_pred             ceeeeecCccCCCCCCCcEEEEEeCC--------CeEEEEEeeCCCceEEEeecCCceEE-EEECCCCCcEEEEEecCCE
Q psy17342        266 PVVGLSSHRAQGHIDFSHLYLTSSYD--------WSVKLWNIKENKPVHSFNEFRDYVMD-VQWSPINPALFATVEVAGR  336 (401)
Q Consensus       266 ~v~~i~~~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~v~~-v~~~~~~~~~l~~~~~d~~  336 (401)
                      .+..+  +|+      ++.|+.++.+        ..|.+||  +++.......+...+.. +.|+ ++  ++++++.++.
T Consensus       218 ~~~~~--spd------g~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~  284 (347)
T 2gop_A          218 SFYAV--DSD------GERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGS  284 (347)
T ss_dssp             SEEEE--EEC------SSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEEETTE
T ss_pred             ceeeE--CCC------CCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc--EEEEEecCCc
Confidence            55544  777      6777776644        3688888  55543333445677886 9999 76  7888899999


Q ss_pred             EEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcE-EEEEeccCcccee
Q psy17342        337 VDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAI-TMFDVGEVGIACL  395 (401)
Q Consensus       337 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v-~iw~~~~~~~~~l  395 (401)
                      ++|| +.+++.    .....+...|.+++|+|  .++++++.++.. .+|.+. ++.+.+
T Consensus       285 ~~l~-~~~g~~----~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~~~l  336 (347)
T 2gop_A          285 VNLY-IWDGEI----KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEEKQL  336 (347)
T ss_dssp             EEEE-EESSSE----EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSEEEC
T ss_pred             EEEE-EcCCce----EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcEEEe
Confidence            9999 874332    22234567799999999  677777777665 788876 543333

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.73  E-value=2.9e-14  Score=121.56  Aligned_cols=280  Identities=8%  Similarity=-0.010  Sum_probs=186.5

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-cCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-CQSPVLSCCFAKFNPYLILGGTYSGQIV  144 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~v~  144 (401)
                      ..+.+++++++|+.+++..          .++.|.+||.. ++ ...+... ....+.++++.+++ .+.++...++.|.
T Consensus        15 ~~~~~i~~d~~g~l~v~~~----------~~~~v~~~d~~-~~-~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~   81 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQH----------KANMISCINLD-GK-ITEYPLPTPDAKVMCLTISSDG-EVWFTENAANKIG   81 (299)
T ss_dssp             CCEEEEEECTTSCEEEEET----------TTTEEEEECTT-CC-EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEE
T ss_pred             CCccceEECCCCCEEEEec----------CCCcEEEEcCC-CC-eEEecCCcccCceeeEEECCCC-CEEEeCCCCCeEE
Confidence            5699999999997554433          47899999987 43 2222221 34678999999977 5666665578899


Q ss_pred             EEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342        145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS  224 (401)
Q Consensus       145 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (401)
                      .|+... ... .    .........+.++++  .+++..+++...++.|..||..  +... ....     ......+..
T Consensus        82 ~~~~~g-~~~-~----~~~~~~~~~~~~i~~--~~~g~l~v~~~~~~~i~~~d~~--g~~~-~~~~-----~~~~~~~~~  145 (299)
T 2z2n_A           82 RITKKG-IIK-E----YTLPNPDSAPYGITE--GPNGDIWFTEMNGNRIGRITDD--GKIR-EYEL-----PNKGSYPSF  145 (299)
T ss_dssp             EECTTS-CEE-E----EECSSTTCCEEEEEE--CTTSCEEEEETTTTEEEEECTT--CCEE-EEEC-----SSTTCCEEE
T ss_pred             EECCCC-cEE-E----EeCCCcCCCceeeEE--CCCCCEEEEecCCceEEEECCC--CCEE-EecC-----CCCCCCCce
Confidence            999762 211 1    111234557889988  7888888877778899999873  1111 1111     113346789


Q ss_pred             EEeccCCCCeEEEEcCCceEEEEeCCCCCCCcee-eecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC
Q psy17342        225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVE-CYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK  303 (401)
Q Consensus       225 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  303 (401)
                      +++. +++..+++...++.|..++.. ..  ... ....+...+.++++.++      +.++++...++.|.+||. +++
T Consensus       146 i~~~-~~g~l~v~~~~~~~i~~~~~~-g~--~~~~~~~~~~~~~~~i~~~~~------g~l~v~~~~~~~i~~~~~-~g~  214 (299)
T 2z2n_A          146 ITLG-SDNALWFTENQNNAIGRITES-GD--ITEFKIPTPASGPVGITKGND------DALWFVEIIGNKIGRITT-SGE  214 (299)
T ss_dssp             EEEC-TTSCEEEEETTTTEEEEECTT-CC--EEEEECSSTTCCEEEEEECTT------SSEEEEETTTTEEEEECT-TCC
T ss_pred             EEEc-CCCCEEEEeCCCCEEEEEcCC-Cc--EEEeeCCCCCCcceeEEECCC------CCEEEEccCCceEEEECC-CCc
Confidence            9999 778777777778899999983 22  111 12334456788999987      677777666889999998 665


Q ss_pred             ceEE-EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcE
Q psy17342        304 PVHS-FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAI  382 (401)
Q Consensus       304 ~~~~-~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  382 (401)
                      .... ...+...+.+++++++|. ++++...++.|..||.. +. ...+.. ..+...+.++++ ++|.++++.. .+.|
T Consensus       215 ~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~-g~-~~~~~~-~~~~~~~~~i~~-~~g~l~v~~~-~~~l  288 (299)
T 2z2n_A          215 ITEFKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTSN-NI-IEEYPI-QIKSAEPHGICF-DGETIWFAME-CDKI  288 (299)
T ss_dssp             EEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEETT-TE-EEEEEC-SSSSCCEEEEEE-CSSCEEEEET-TTEE
T ss_pred             EEEEECCCCCCCceeEEECCCCC-EEEeccCCceEEEECCC-Cc-eEEEeC-CCCCCccceEEe-cCCCEEEEec-CCcE
Confidence            3321 222346789999999996 66666567899999983 32 222211 123456889999 8888776655 5678


Q ss_pred             EEEEeccCc
Q psy17342        383 TMFDVGEVG  391 (401)
Q Consensus       383 ~iw~~~~~~  391 (401)
                      ..++.++++
T Consensus       289 ~~~~~~~~~  297 (299)
T 2z2n_A          289 GKLTLIKDN  297 (299)
T ss_dssp             EEEEEC---
T ss_pred             EEEEcCccc
Confidence            888887764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.73  E-value=9.1e-16  Score=146.03  Aligned_cols=250  Identities=11%  Similarity=0.061  Sum_probs=163.8

Q ss_pred             ecCCCeeEEEEeCCCCceEEEE--ecCCeEEEEECCCCCCCceeeccccccCCCCcEE---------EEEEeecCCceE-
Q psy17342        116 FCQSPVLSCCFAKFNPYLILGG--TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVF---------CMSVIGTQNAHN-  183 (401)
Q Consensus       116 ~~~~~v~~~~~~~~~~~~l~~g--~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~~~~~~~~-  183 (401)
                      .|...+..++|+++. .+++..  +.++...||....+...      ..+..|...+.         ...|..+|+++. 
T Consensus        21 ~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~l~~~~~~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~   93 (662)
T 3azo_A           21 SRSGRPACVGAVGDE-VWWVAPRPAEAGRATLVRRRADGAE------ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL   93 (662)
T ss_dssp             HTCSCCEEEEEETTE-EEEEEEETTTTTEEEEEEECTTSCE------EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred             hcCCccceeEEcCCe-EEEEecCcccCCcEEEEEECCCCCc------ceeCCCCccccccccccCCccceeeeecCCCeE
Confidence            457789999999753 455555  45788999986433211      11234444444         555632489988 


Q ss_pred             EEEEeC-CCcEEEeeccC-C-CCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC----------ceEEEEeCC
Q psy17342        184 LISISN-DGRLCSWSLEM-L-SSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED----------GNVYSACRH  250 (401)
Q Consensus       184 l~s~~~-dg~i~~wd~~~-~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------~~i~~~~~~  250 (401)
                      |+.++. +..|.++++.. . +.........   ...+...+..++|+ |+++.|++++.+          ..|++|++.
T Consensus        94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~---~~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~  169 (662)
T 3azo_A           94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS---AVGGGLRWADPVLL-PERGEVWCMAEEFTGEGPSDVRRFLAAVPLD  169 (662)
T ss_dssp             EEEEBTTTCCEEEECTTSTTCCCCEECSCCC---CSTTCEEEEEEEEE-TTTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred             EEEEECCCCeEEEEcCCCCCCCCCEeccCCc---cCCCCccccCcEEC-CCCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence            776654 45566665540 0 2222211100   01145678899999 899999988876          579999987


Q ss_pred             CCC----CCceeeec-CCCCceeeeecCccCCCCCCCcEEEEEeCC--------CeEEEEEee-CC---CceEEEeecCC
Q psy17342        251 GNK----AGNVECYE-GHEGPVVGLSSHRAQGHIDFSHLYLTSSYD--------WSVKLWNIK-EN---KPVHSFNEFRD  313 (401)
Q Consensus       251 ~~~----~~~~~~~~-~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~-~~---~~~~~~~~~~~  313 (401)
                      +..    . ....+. .+...+..++|+|+      +++|+.++.+        ..|++||+. ++   +.......|..
T Consensus       170 ~~~~~~~~-~~~~l~~~~~~~~~~~~~SpD------G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~  242 (662)
T 3azo_A          170 GSAAADRS-AVRELSDDAHRFVTGPRLSPD------GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE  242 (662)
T ss_dssp             STTTTCGG-GSEESSCSCSSEECCCEECTT------SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB
T ss_pred             CCccccCC-ceeEEEecCCCcccCceECCC------CCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc
Confidence            510    1 234444 56678889999999      7888877754        379999998 56   34333444578


Q ss_pred             ceEEEEECCCCCcEEEEEecCC--EEEEEeCCCCCCCcceEEeecCCC--------CeEEEEecCCCcEEEEEecCCcEE
Q psy17342        314 YVMDVQWSPINPALFATVEVAG--RVDLWNLNLDTEVPATSAIVEGAP--------ALSRVTWTPNGTQLCVGDEKGAIT  383 (401)
Q Consensus       314 ~v~~v~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~--------~v~~~~~s~~g~~l~~~~~dg~v~  383 (401)
                      .+..++|+|+|+ ++++++.++  .|.+||+.+++......   .+..        .+..++|+|+++++++++. +.++
T Consensus       243 ~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~---~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~  317 (662)
T 3azo_A          243 AIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCR---REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAV  317 (662)
T ss_dssp             CEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSC---CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCE
T ss_pred             eEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeeccc---ccccccCccccccCceEeEeCCCEEEEEEEc-CccE
Confidence            899999999998 888888888  67777765554322211   1111        1457899999999999998 9999


Q ss_pred             EEEec
Q psy17342        384 MFDVG  388 (401)
Q Consensus       384 iw~~~  388 (401)
                      ||.+.
T Consensus       318 l~~~d  322 (662)
T 3azo_A          318 LGILD  322 (662)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.73  E-value=3.6e-15  Score=142.83  Aligned_cols=256  Identities=9%  Similarity=-0.010  Sum_probs=167.7

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe---
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ---  142 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~---  142 (401)
                      ..+..++|||||++|+.+....     ++....|++||+.+++..... .. ...+..++|+||+. .|+.++.++.   
T Consensus       125 ~~~~~~~~SPDg~~la~~~~~~-----G~~~~~i~v~d~~tg~~~~~~-~~-~~~~~~~~wspDg~-~l~~~~~~~~~~~  196 (710)
T 2xdw_A          125 VALRGYAFSEDGEYFAYGLSAS-----GSDWVTIKFMKVDGAKELPDV-LE-RVKFSCMAWTHDGK-GMFYNAYPQQDGK  196 (710)
T ss_dssp             EEEEEEEECTTSSEEEEEEEET-----TCSCEEEEEEETTTTEEEEEE-EE-EECSCCEEECTTSS-EEEEEECCCCSSC
T ss_pred             EEEEEEEECCCCCEEEEEEcCC-----CCceEEEEEEECCCCCCCccc-cc-CcccceEEEEeCCC-EEEEEEECCcccc
Confidence            4688999999999999887310     111238999999987765432 22 22367899999884 5555555554   


Q ss_pred             -------------EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-----CCcEEEeeccCCC--
Q psy17342        143 -------------IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-----DGRLCSWSLEMLS--  202 (401)
Q Consensus       143 -------------v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~~wd~~~~~--  202 (401)
                                   |++|++.++.......  .....|...+..+.|  +|++++|+..+.     +..|.+||+....  
T Consensus       197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v--~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~  272 (710)
T 2xdw_A          197 SDGTETSTNLHQKLYYHVLGTDQSEDILC--AEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNG  272 (710)
T ss_dssp             CSSSCCCCCCCCEEEEEETTSCGGGCEEE--ECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred             ccccccccCCCCEEEEEECCCCcccceEE--eccCCCCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence                         9999998765321110  112235566788889  999999887765     5679999987410  


Q ss_pred             --CCccccccccccccCCccceEEEEeccCCCCeEEEEcCC----ceEEEEeCCCCCCCceeeecCCCC--ceeeeecCc
Q psy17342        203 --SPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED----GNVYSACRHGNKAGNVECYEGHEG--PVVGLSSHR  274 (401)
Q Consensus       203 --~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~~~~~~~~~~~~~~~~~~~~~--~v~~i~~~~  274 (401)
                        .......+..     +...+.. .|+ +++..|+..+..    +.|++|++..........+..|..  .+.++.|.+
T Consensus       273 ~~~~~~~~~l~~-----~~~~~~~-~~s-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~  345 (710)
T 2xdw_A          273 ITGILKWVKLID-----NFEGEYD-YVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR  345 (710)
T ss_dssp             SCSSCCCEEEEC-----SSSSCEE-EEE-EETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET
T ss_pred             cCCccceEEeeC-----CCCcEEE-EEe-ccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc
Confidence              0001111211     2333333 466 577776665543    369999987543212344444544  678888886


Q ss_pred             cCCCCCCCcEEEEEeCCCe--EEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEec---CCEEEEEeCCCCC
Q psy17342        275 AQGHIDFSHLYLTSSYDWS--VKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEV---AGRVDLWNLNLDT  346 (401)
Q Consensus       275 ~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~---d~~i~iwd~~~~~  346 (401)
                      .      +.++++...|+.  |.+||+.+++.+..+..+.+.+..+.++|+++.++++.+.   .+.|++||+.+++
T Consensus       346 ~------~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          346 S------NFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             T------TEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             C------CEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            5      678888888885  5556665777778888777889999999998755555443   4789999998766

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.72  E-value=8.4e-15  Score=124.88  Aligned_cols=245  Identities=11%  Similarity=0.050  Sum_probs=167.8

Q ss_pred             ecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEE
Q psy17342        116 FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCS  195 (401)
Q Consensus       116 ~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~  195 (401)
                      .......+++|+|++..+++++..++.|..|+..++ ..       .+..+...+.++++  ++++.++++...++.|.+
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~-------~~~~~~~~~~~l~~--~~dg~l~v~~~~~~~i~~   94 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS-------PEMHPSHHQNGHCL--NKQGHLIACSHGLRRLER   94 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE-------EEESSCSSEEEEEE--CTTCCEEEEETTTTEEEE
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE-------EEECCCCCcceeeE--CCCCcEEEEecCCCeEEE
Confidence            345567899999988558888888999999999876 21       12345677899999  899998888777889999


Q ss_pred             eeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEE----Ec-------------CCceEEEEeCCCCCCCcee
Q psy17342        196 WSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV----GC-------------EDGNVYSACRHGNKAGNVE  258 (401)
Q Consensus       196 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~----~~-------------~d~~i~~~~~~~~~~~~~~  258 (401)
                      ||..+.. ........   .......+..++++ ++++++++    |+             ..+.|+.++.. .   ...
T Consensus        95 ~d~~~g~-~~~~~~~~---~~~~~~~~~~i~~d-~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g---~~~  165 (296)
T 3e5z_A           95 QREPGGE-WESIADSF---EGKKLNSPNDVCLA-PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G---TLS  165 (296)
T ss_dssp             ECSTTCC-EEEEECEE---TTEECCCCCCEEEC-TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S---CEE
T ss_pred             EcCCCCc-EEEEeecc---CCCCCCCCCCEEEC-CCCCEEEECCccccccccccccccccCCCcEEEEECCC-C---CEE
Confidence            9985422 11111100   00112346778999 78887776    33             13467777654 1   234


Q ss_pred             eecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEee-CCCc---eEEEeecCCceEEEEECCCCCcEEEEEecC
Q psy17342        259 CYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIK-ENKP---VHSFNEFRDYVMDVQWSPINPALFATVEVA  334 (401)
Q Consensus       259 ~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~---~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d  334 (401)
                      .+..+......++|+|+      ++.+++.+.++.|.+||+. +++.   ...+..+...+.+++++++|. ++++.  +
T Consensus       166 ~~~~~~~~~~gi~~s~d------g~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~  236 (296)
T 3e5z_A          166 APIRDRVKPNGLAFLPS------GNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--G  236 (296)
T ss_dssp             EEECCCSSEEEEEECTT------SCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--T
T ss_pred             EeecCCCCCccEEECCC------CCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--C
Confidence            44556667789999998      6777777778999999997 4544   233333455677899999997 55555  7


Q ss_pred             CEEEEEeCCCCCCCcceEEeecCCCCeEEEEe-cCCCcEEEEEecCCcEEEEEeccCccce
Q psy17342        335 GRVDLWNLNLDTEVPATSAIVEGAPALSRVTW-TPNGTQLCVGDEKGAITMFDVGEVGIAC  394 (401)
Q Consensus       335 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~~~~dg~v~iw~~~~~~~~~  394 (401)
                      +.|.+||.. ++....+.   .+.. +++++| +|+++.|++++.++ +.-++.++.+++.
T Consensus       237 ~~v~~~~~~-g~~~~~~~---~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~~  291 (296)
T 3e5z_A          237 DGVHVLTPD-GDELGRVL---TPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLEH  291 (296)
T ss_dssp             TEEEEECTT-SCEEEEEE---CSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBCCC
T ss_pred             CeEEEECCC-CCEEEEEE---CCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccccc
Confidence            899999986 44333332   2333 889999 58999999888764 6666666665443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.72  E-value=3.7e-15  Score=142.78  Aligned_cols=284  Identities=9%  Similarity=0.004  Sum_probs=179.1

Q ss_pred             CCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-------cCCCeeEEEEeCCCCceEEEEecCC----eE
Q psy17342         75 TQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-------CQSPVLSCCFAKFNPYLILGGTYSG----QI  143 (401)
Q Consensus        75 ~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~g~~dg----~v  143 (401)
                      |+|++++......     +...+.+.+.+...++  .+..+.       +...+..++|||++..++++.+.+|    .|
T Consensus        81 ~dG~~~~~~~~~~-----~~~~~~l~~~~~~~~~--~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i  153 (710)
T 2xdw_A           81 KKGKRYFYFYNTG-----LQNQRVLYVQDSLEGE--ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTI  153 (710)
T ss_dssp             EETTEEEEEEECS-----SCSSCEEEEESSTTSC--CEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEE
T ss_pred             EECCEEEEEEEcC-----CceEEEEEEEcCCCCC--cEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEE
Confidence            8999888776311     1112244555544332  222222       1225789999999854444444344    89


Q ss_pred             EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCc----------------EEEeeccCCCCCccc
Q psy17342        144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR----------------LCSWSLEMLSSPQET  207 (401)
Q Consensus       144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~----------------i~~wd~~~~~~~~~~  207 (401)
                      ++||+.+++.....     .  ....+..++|  +|+++.|+.++.++.                |.+|++.+... ...
T Consensus       154 ~v~d~~tg~~~~~~-----~--~~~~~~~~~w--spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~-~~~  223 (710)
T 2xdw_A          154 KFMKVDGAKELPDV-----L--ERVKFSCMAW--THDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS-EDI  223 (710)
T ss_dssp             EEEETTTTEEEEEE-----E--EEECSCCEEE--CTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG-GCE
T ss_pred             EEEECCCCCCCccc-----c--cCcccceEEE--EeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcc-cce
Confidence            99999987653211     1  1112567889  999999999988766                99999875221 111


Q ss_pred             cccccccccCCccceEEEEeccCCCCeEEEEcC-----CceEEEEeCCC------CCCCceeeecCCCCceeeeecCccC
Q psy17342        208 RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE-----DGNVYSACRHG------NKAGNVECYEGHEGPVVGLSSHRAQ  276 (401)
Q Consensus       208 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----d~~i~~~~~~~------~~~~~~~~~~~~~~~v~~i~~~~~~  276 (401)
                      ....   ...+...+..+.|+ +++++|+.++.     +..|++||+..      ... ....+..+...+.. .|+|+ 
T Consensus       224 ~v~~---~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~l~~~~~~~~~-~~s~d-  296 (710)
T 2xdw_A          224 LCAE---FPDEPKWMGGAELS-DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-KWVKLIDNFEGEYD-YVTNE-  296 (710)
T ss_dssp             EEEC---CTTCTTCEEEEEEC-TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-CCEEEECSSSSCEE-EEEEE-
T ss_pred             EEec---cCCCCeEEEEEEEc-CCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-ceEEeeCCCCcEEE-EEecc-
Confidence            1111   11234457889999 89998887764     56899999874      211 24455556665554 47776 


Q ss_pred             CCCCCCcEEEEEeC-C---CeEEEEEeeCCCc--eEEEeecCC--ceEEEEECCCCCcEEEEEecCCE--EEEEeCCCCC
Q psy17342        277 GHIDFSHLYLTSSY-D---WSVKLWNIKENKP--VHSFNEFRD--YVMDVQWSPINPALFATVEVAGR--VDLWNLNLDT  346 (401)
Q Consensus       277 ~~~~~~~~l~s~~~-d---~~i~iwd~~~~~~--~~~~~~~~~--~v~~v~~~~~~~~~l~~~~~d~~--i~iwd~~~~~  346 (401)
                           +..|+..+. +   ..|.+||+.++..  ...+..|..  .+..++|++++. ++++...|+.  |.+||+.+++
T Consensus       297 -----g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-lv~~~~~~g~~~l~~~~~~~g~  370 (710)
T 2xdw_A          297 -----GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF-LVLCYLHDVKNTLQLHDLATGA  370 (710)
T ss_dssp             -----TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTTCC
T ss_pred             -----CCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE-EEEEEEECCEEEEEEEECCCCC
Confidence                 555555443 2   3699999987642  355555544  688899997664 8888888885  5566775555


Q ss_pred             CCcceEEeecCCCCeEEEEecCCCcEEEEEe----cCCcEEEEEeccCc
Q psy17342        347 EVPATSAIVEGAPALSRVTWTPNGTQLCVGD----EKGAITMFDVGEVG  391 (401)
Q Consensus       347 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----~dg~v~iw~~~~~~  391 (401)
                      ....+.   .+...+..++++|+++.|+...    ..+.|++||+.+++
T Consensus       371 ~~~~l~---~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          371 LLKIFP---LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEC---CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEecC---CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            333322   2356688899999987666432    34789999998876

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.71  E-value=1e-15  Score=146.17  Aligned_cols=288  Identities=8%  Similarity=-0.030  Sum_probs=178.4

Q ss_pred             cCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-------cCCCeeEEEEeCCCCceEEEEec----CCe
Q psy17342         74 STQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-------CQSPVLSCCFAKFNPYLILGGTY----SGQ  142 (401)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~g~~----dg~  142 (401)
                      +|+|++++......     +...+.|.+.+...+.  .+..+.       |...+..++|||++..++++.+.    +..
T Consensus        76 ~~dG~~~~~~~~~~-----~~~~~~l~~~~~~~~~--~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~  148 (695)
T 2bkl_A           76 SRRNGRFFYVRTHK-----DKEKAILYWRQGESGQ--EKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAV  148 (695)
T ss_dssp             EEETTEEEEEEECT-----TCSSCEEEEEESTTSC--CEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCE
T ss_pred             EEECCEEEEEEEcC-----CCeEEEEEEEcCCCCC--cEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEE
Confidence            38899888877411     0012334444443332  333332       22368899999998544444333    457


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCc-------------EEEeeccCCCCC-cccc
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR-------------LCSWSLEMLSSP-QETR  208 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-------------i~~wd~~~~~~~-~~~~  208 (401)
                      |++||+.+++....    ..+...  ....++|  +|+++.|+.++.|..             |++|++.+.... ....
T Consensus       149 i~v~dl~tg~~~~~----~~~~~~--~~~~~~w--spDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~  220 (695)
T 2bkl_A          149 LHVIDVDSGEWSKV----DVIEGG--KYATPKW--TPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH  220 (695)
T ss_dssp             EEEEETTTCCBCSS----CCBSCC--TTCCCEE--CTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE
T ss_pred             EEEEECCCCCCcCC----cccCcc--cccceEE--ecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE
Confidence            99999998774300    011111  1157889  999999999988776             999998753211 1111


Q ss_pred             ccccccccCCccceEEEEeccCCCCeEEEEcCCc----eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcE
Q psy17342        209 DLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG----NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHL  284 (401)
Q Consensus       209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~----~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~  284 (401)
                      .     ...+...+..+.|+ +++++|++++.++    .|++++....   ....+..+...+....+ ++      +.+
T Consensus       221 ~-----~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~~~~-~~------g~l  284 (695)
T 2bkl_A          221 E-----RTGDPTTFLQSDLS-RDGKYLFVYILRGWSENDVYWKRPGEK---DFRLLVKGVGAKYEVHA-WK------DRF  284 (695)
T ss_dssp             C-----CCCCTTCEEEEEEC-TTSCCEEEEEEETTTEEEEEEECTTCS---SCEEEEECSSCCEEEEE-ET------TEE
T ss_pred             e-----cCCCCEEEEEEEEC-CCCCEEEEEEeCCCCceEEEEEcCCCC---ceEEeecCCCceEEEEe-cC------CcE
Confidence            1     12244578899999 8999888877655    6777765322   23445555555566655 44      455


Q ss_pred             EEEEe---CCCeEEEEEeeCCCc--eEEEeec--CCceEEEEECCCCCcEEEEEecCCEEEEEeCC-CCCCCcceEEeec
Q psy17342        285 YLTSS---YDWSVKLWNIKENKP--VHSFNEF--RDYVMDVQWSPINPALFATVEVAGRVDLWNLN-LDTEVPATSAIVE  356 (401)
Q Consensus       285 l~s~~---~d~~i~iwd~~~~~~--~~~~~~~--~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~  356 (401)
                      ++...   .++.|.+||+.+++.  ...+..+  ...+..++|+ ++ .++++...|+..+||.+. .++....+  ...
T Consensus       285 ~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~~~~l--~~~  360 (695)
T 2bkl_A          285 YVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGKPVRTV--QLP  360 (695)
T ss_dssp             EEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCCEEEEC--CCS
T ss_pred             EEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCeeEEe--cCC
Confidence            45444   257899999977653  2344433  4467888888 44 488999999998888665 23322111  122


Q ss_pred             CCCCeEEEEecCCCcEEEEE----ecCCcEEEEEeccCccceee
Q psy17342        357 GAPALSRVTWTPNGTQLCVG----DEKGAITMFDVGEVGIACLK  396 (401)
Q Consensus       357 ~~~~v~~~~~s~~g~~l~~~----~~dg~v~iw~~~~~~~~~l~  396 (401)
                      +...+..++++|+++.|+..    ...+.|++||+.+++.+.++
T Consensus       361 ~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~  404 (695)
T 2bkl_A          361 GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA  404 (695)
T ss_dssp             SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred             CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence            34567788899999877633    33478999999988655544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.68  E-value=1.2e-13  Score=119.89  Aligned_cols=230  Identities=11%  Similarity=0.034  Sum_probs=151.9

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC----C
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS----G  141 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d----g  141 (401)
                      ..+.+++|+|+|+.++++.          .++.|.+||.++++... +...+...+.+++++|++ +++++...+    +
T Consensus        45 ~~~~~~~~~~~g~l~~~~~----------~~~~i~~~d~~~~~~~~-~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~  112 (333)
T 2dg1_A           45 LQLEGLNFDRQGQLFLLDV----------FEGNIFKINPETKEIKR-PFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTG  112 (333)
T ss_dssp             CCEEEEEECTTSCEEEEET----------TTCEEEEECTTTCCEEE-EEECSSSSEEEEEECTTS-CEEEEECTTSSSCC
T ss_pred             ccccCcEECCCCCEEEEEC----------CCCEEEEEeCCCCcEEE-EeeCCCCCcceEEECCCC-cEEEEeCCCCCCCc
Confidence            5578999999998555555          68899999998665332 222446789999999987 566666555    5


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC------CCcEEEeeccCCCCCccccccccccc
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN------DGRLCSWSLEMLSSPQETRDLQYNNK  215 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~~~~~  215 (401)
                      .|.+||..+........    ...+...+.++++  .+++..+++...      .+.|..++...  ....  .+..   
T Consensus       113 ~i~~~d~~~~~~~~~~~----~~~~~~~~~~i~~--d~~g~l~v~~~~~~~~~~~~~l~~~~~~~--~~~~--~~~~---  179 (333)
T 2dg1_A          113 GIFAATENGDNLQDIIE----DLSTAYCIDDMVF--DSKGGFYFTDFRGYSTNPLGGVYYVSPDF--RTVT--PIIQ---  179 (333)
T ss_dssp             EEEEECTTSCSCEEEEC----SSSSCCCEEEEEE--CTTSCEEEEECCCBTTBCCEEEEEECTTS--CCEE--EEEE---
T ss_pred             eEEEEeCCCCEEEEEEc----cCccCCcccceEE--CCCCCEEEEeccccccCCCceEEEEeCCC--CEEE--Eeec---
Confidence            89999988765431111    1134567899999  889987776654      24455555432  1111  1111   


Q ss_pred             cCCccceEEEEeccCCCCeE-EEEcCCceEEEEeCCCCCCCcee--------eecCCCCceeeeecCccCCCCCCCcEEE
Q psy17342        216 QTKNLAVLSLAFPQNDVNNF-VVGCEDGNVYSACRHGNKAGNVE--------CYEGHEGPVVGLSSHRAQGHIDFSHLYL  286 (401)
Q Consensus       216 ~~~~~~v~~~~~~~~~~~~l-~~~~~d~~i~~~~~~~~~~~~~~--------~~~~~~~~v~~i~~~~~~~~~~~~~~l~  286 (401)
                        ....+..++|+ ++++.+ ++.+.++.|++|+...... ...        .+.++ ..+..+++.++      +++++
T Consensus       180 --~~~~~~~i~~~-~dg~~l~v~~~~~~~i~~~d~~~~g~-~~~~~~~~~~~~~~~~-~~~~~i~~d~~------G~l~v  248 (333)
T 2dg1_A          180 --NISVANGIALS-TDEKVLWVTETTANRLHRIALEDDGV-TIQPFGATIPYYFTGH-EGPDSCCIDSD------DNLYV  248 (333)
T ss_dssp             --EESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECTTSS-SEEEEEEEEEEECCSS-SEEEEEEEBTT------CCEEE
T ss_pred             --CCCcccceEEC-CCCCEEEEEeCCCCeEEEEEecCCCc-CcccccceEEEecCCC-CCCCceEECCC------CCEEE
Confidence              22357889999 788755 4556688999999853211 111        11222 46778999988      68888


Q ss_pred             EEeCCCeEEEEEeeCCCceEEEeecCC------ceEEEEECCCCCcEEEEEe
Q psy17342        287 TSSYDWSVKLWNIKENKPVHSFNEFRD------YVMDVQWSPINPALFATVE  332 (401)
Q Consensus       287 s~~~d~~i~iwd~~~~~~~~~~~~~~~------~v~~v~~~~~~~~~l~~~~  332 (401)
                      +...++.|.+||. +++.+..+..+..      .+.+++|+|+++.++++..
T Consensus       249 ~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~  299 (333)
T 2dg1_A          249 AMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  299 (333)
T ss_dssp             EEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence            8777899999998 5666777765433      5889999999864544444

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.68  E-value=1.6e-14  Score=124.84  Aligned_cols=274  Identities=8%  Similarity=-0.039  Sum_probs=174.8

Q ss_pred             CCcEEEEEeCcCCCCCceEEE-----ecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCc
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEF-----FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHP  169 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  169 (401)
                      .++.|.++|.++++....+..     ........+.+.  +.++.++...++.|.+||..+.+.....       .....
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i-------~~~~~   85 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRI-------TGFTS   85 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEE-------ECCSS
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEc-------CCCCC
Confidence            489999999998765432211     012346778775  3366666667899999999987753221       22356


Q ss_pred             EEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc-CCceEEEEe
Q psy17342        170 VFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-EDGNVYSAC  248 (401)
Q Consensus       170 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~~~  248 (401)
                      ...+++  ++++..+++...++.|.+||..+.. ....+....  ..+.......+++.  ++..+++.. .++.|.++|
T Consensus        86 p~~i~~--~~~g~lyv~~~~~~~v~~iD~~t~~-~~~~i~~g~--~~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~viD  158 (328)
T 3dsm_A           86 PRYIHF--LSDEKAYVTQIWDYRIFIINPKTYE-ITGYIECPD--MDMESGSTEQMVQY--GKYVYVNCWSYQNRILKID  158 (328)
T ss_dssp             EEEEEE--EETTEEEEEEBSCSEEEEEETTTTE-EEEEEECTT--CCTTTCBCCCEEEE--TTEEEEEECTTCCEEEEEE
T ss_pred             CcEEEE--eCCCeEEEEECCCCeEEEEECCCCe-EEEEEEcCC--ccccCCCcceEEEE--CCEEEEEcCCCCCEEEEEE
Confidence            788888  7788555555488999999987532 111111110  00111234456663  334444443 488999999


Q ss_pred             CCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC----------CeEEEEEeeCCCceEEEeec-CCceEE
Q psy17342        249 RHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD----------WSVKLWNIKENKPVHSFNEF-RDYVMD  317 (401)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~~-~~~v~~  317 (401)
                      ....+  .+..+... .....+.++|+      +++++++..+          +.|.++|..+++....+... ......
T Consensus       159 ~~t~~--~~~~i~~g-~~p~~i~~~~d------G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~  229 (328)
T 3dsm_A          159 TETDK--VVDELTIG-IQPTSLVMDKY------NKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSE  229 (328)
T ss_dssp             TTTTE--EEEEEECS-SCBCCCEECTT------SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEE
T ss_pred             CCCCe--EEEEEEcC-CCccceEEcCC------CCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCcee
Confidence            87443  34444432 33468888887      6777776554          78999999888877776542 236889


Q ss_pred             EEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC-CcEEEEE----ecCCcEEEEEeccCcc
Q psy17342        318 VQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN-GTQLCVG----DEKGAITMFDVGEVGI  392 (401)
Q Consensus       318 v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~----~~dg~v~iw~~~~~~~  392 (401)
                      ++++|+++. ++.+..  .|.+||..+++....... ..+......++++|+ +.++++.    ..++.|.+||.. +  
T Consensus       230 la~~~d~~~-lyv~~~--~v~~~d~~t~~~~~~~~~-~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g--  302 (328)
T 3dsm_A          230 VQLNGTRDT-LYWINN--DIWRMPVEADRVPVRPFL-EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G--  302 (328)
T ss_dssp             EEECTTSCE-EEEESS--SEEEEETTCSSCCSSCSB-CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C--
T ss_pred             EEEecCCCE-EEEEcc--EEEEEECCCCceeeeeee-cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C--
Confidence            999999874 444433  899999987765321111 111356889999995 5555555    568899999998 5  


Q ss_pred             ceeeeeec
Q psy17342        393 ACLKFITS  400 (401)
Q Consensus       393 ~~l~~~~~  400 (401)
                      +.++.+..
T Consensus       303 ~~~~~i~~  310 (328)
T 3dsm_A          303 KLIDEFYV  310 (328)
T ss_dssp             CEEEEEEE
T ss_pred             CEEEEEEe
Confidence            45555543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.68  E-value=2.8e-14  Score=119.82  Aligned_cols=241  Identities=10%  Similarity=-0.021  Sum_probs=163.8

Q ss_pred             CeeEEEEeCCCCceEE-EEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeec
Q psy17342        120 PVLSCCFAKFNPYLIL-GGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSL  198 (401)
Q Consensus       120 ~v~~~~~~~~~~~~l~-~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~  198 (401)
                      ...++++.+++ ++++ +...++.|.+|+..+......      ...+...+.++++  .+++..+++.. ++.|.+||.
T Consensus        25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~p~~i~~--~~~g~l~v~~~-~~~i~~~d~   94 (270)
T 1rwi_B           25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTVL------PFNGLYQPQGLAV--DGAGTVYVTDF-NNRVVTLAA   94 (270)
T ss_dssp             CEEEEEECTTC-CEEEEECSSSCEEEEECC-----EEC------CCCSCCSCCCEEE--CTTCCEEEEET-TTEEEEECT
T ss_pred             CccceEECCCC-CEEEEccCCCCcEEEecCCCcccceE------eeCCcCCcceeEE--CCCCCEEEEcC-CCEEEEEeC
Confidence            67899999987 5666 546788999998765432110      1223346678888  78888666655 889999997


Q ss_pred             cCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCC
Q psy17342        199 EMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGH  278 (401)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  278 (401)
                      ...  ......      ......+..++++ +++.++++...++.|.+|+.....  ...........+.++++.|+   
T Consensus        95 ~~~--~~~~~~------~~~~~~p~~i~~~-~~g~l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~~~~---  160 (270)
T 1rwi_B           95 GSN--NQTVLP------FDGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAGSKT--QTVLPFTGLNDPDGVAVDNS---  160 (270)
T ss_dssp             TCS--CCEECC------CCSCSSEEEEEEC-TTCCEEEEEGGGTEEEEECTTCCS--CEECCCCSCCSCCCEEECTT---
T ss_pred             CCc--eEeeee------cCCcCCCcceEEC-CCCCEEEEECCCCEEEEEECCCce--eEeeccccCCCceeEEEeCC---
Confidence            642  111111      1122467899999 688877777778899999754322  12112223345788999987   


Q ss_pred             CCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCC
Q psy17342        279 IDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGA  358 (401)
Q Consensus       279 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  358 (401)
                         ++++++...++.|.+||............+...+.+++++++|. ++++...++.|.+||........   ....+.
T Consensus       161 ---g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~~~~~~---~~~~~~  233 (270)
T 1rwi_B          161 ---GNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTTSTV---LPFTGL  233 (270)
T ss_dssp             ---CCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-EEEEETTTSCEEEECTTCSCCEE---CCCCSC
T ss_pred             ---CCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCC-EEEEECCCCcEEEEcCCCCccee---eccCCC
Confidence               67777777788999999876544332223335688999999995 77777778899999987543211   112233


Q ss_pred             CCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        359 PALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       359 ~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      ..+.+++++++|+++++...++.|+++++...+
T Consensus       234 ~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          234 NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            568999999999988888899999999998764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.66  E-value=4.8e-16  Score=138.33  Aligned_cols=233  Identities=7%  Similarity=-0.038  Sum_probs=144.8

Q ss_pred             EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeE-------------------EEEeCCC
Q psy17342         70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLS-------------------CCFAKFN  130 (401)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~  130 (401)
                      .+.|+|+|+.|+.++          .++.|++||+.+++...... .+......                   +.|+|++
T Consensus        85 ~~~~spdg~~l~~~~----------~~~~l~~~d~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg  153 (396)
T 3c5m_A           85 GGFISTDERAFFYVK----------NELNLMKVDLETLEEQVIYT-VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT  153 (396)
T ss_dssp             TCEECTTSSEEEEEE----------TTTEEEEEETTTCCEEEEEE-CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred             cceECCCCCEEEEEE----------cCCcEEEEECCCCCcEEEEe-cccccCCCCCEEEeccCCccccccccccccCCCC
Confidence            378999999999998          67799999998765432222 12221112                   3456666


Q ss_pred             CceEEEE----ecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecC-CceEEEEEeCC------CcEEEeecc
Q psy17342        131 PYLILGG----TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISND------GRLCSWSLE  199 (401)
Q Consensus       131 ~~~l~~g----~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d------g~i~~wd~~  199 (401)
                      ..+++..    ..+..|.+||+.+++....       ..+...+..+.|  +| ++..|+..+.+      ..|.+|++.
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~-------~~~~~~~~~~~~--sp~dg~~l~~~~~~~~~~~~~~l~~~d~~  224 (396)
T 3c5m_A          154 SWEKFAEFYHTNPTCRLIKVDIETGELEVI-------HQDTAWLGHPIY--RPFDDSTVGFCHEGPHDLVDARMWLVNED  224 (396)
T ss_dssp             SHHHHHHHHHTCCCEEEEEEETTTCCEEEE-------EEESSCEEEEEE--ETTEEEEEEEEECSCSSSCSCCCEEEETT
T ss_pred             cceeeeeeccCCCcceEEEEECCCCcEEee-------ccCCcccccceE--CCCCCCEEEEEecCCCCCCCceEEEEECC
Confidence            3332221    3566899999987654322       245667888999  88 78877776654      357777775


Q ss_pred             CCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC-----ceEEEEeCCCCCCCceeeecCCCCceeeeecCc
Q psy17342        200 MLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED-----GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR  274 (401)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  274 (401)
                      .. .......  .    .....+..++|+ |+++.|+.++.+     +.|++||+.......+..+.+    .. +.|+|
T Consensus       225 ~~-~~~~l~~--~----~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~  291 (396)
T 3c5m_A          225 GS-NVRKIKE--H----AEGESCTHEFWI-PDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSN  291 (396)
T ss_dssp             SC-CCEESSC--C----CTTEEEEEEEEC-TTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEEC
T ss_pred             CC-ceeEeec--c----CCCccccceEEC-CCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccC
Confidence            31 1111111  0    013357889999 788887776543     459999987543222222221    22 78888


Q ss_pred             -cCCCCCCCcEEEEEe----------------CCCeEEEEEeeCCCceEEEeecCC-----------ceEEEEECCCCCc
Q psy17342        275 -AQGHIDFSHLYLTSS----------------YDWSVKLWNIKENKPVHSFNEFRD-----------YVMDVQWSPINPA  326 (401)
Q Consensus       275 -~~~~~~~~~~l~s~~----------------~d~~i~iwd~~~~~~~~~~~~~~~-----------~v~~v~~~~~~~~  326 (401)
                       +      +++++.++                .+..|++||+.+++. ..+..+..           .+..++|+|+|+.
T Consensus       292 ~d------g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  364 (396)
T 3c5m_A          292 FD------GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDG  364 (396)
T ss_dssp             SS------SSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred             CC------CceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCe
Confidence             7      67777654                247899999987765 34555444           2567899999985


Q ss_pred             EEEEEecCCEEEEEeC
Q psy17342        327 LFATVEVAGRVDLWNL  342 (401)
Q Consensus       327 ~l~~~~~d~~i~iwd~  342 (401)
                      +++++..++...||.+
T Consensus       365 l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          365 VLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             EEEEECTTSSCEEEEE
T ss_pred             EEEEecCCCCceEEEE
Confidence            5555555565555544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.66  E-value=4.5e-14  Score=118.58  Aligned_cols=242  Identities=11%  Similarity=-0.031  Sum_probs=162.0

Q ss_pred             ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEE
Q psy17342         67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLW  146 (401)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw  146 (401)
                      ...+++++|+|+.++++..         .++.|.+|+..+.... .........+.++++.+++ +++++.. ++.|.+|
T Consensus        25 ~p~~i~~~~~g~l~v~~~~---------~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~   92 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEG---------MYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTL   92 (270)
T ss_dssp             CEEEEEECTTCCEEEEECS---------SSCEEEEECC-----E-ECCCCSCCSCCCEEECTTC-CEEEEET-TTEEEEE
T ss_pred             CccceEECCCCCEEEEccC---------CCCcEEEecCCCcccc-eEeeCCcCCcceeEECCCC-CEEEEcC-CCEEEEE
Confidence            5889999999974442431         5789999997643321 1111223567899999977 5665554 8899999


Q ss_pred             ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEE
Q psy17342        147 DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLA  226 (401)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  226 (401)
                      |.........      .......+.++++  .+++..+++...++.|.+|+.....   .....     ......+..++
T Consensus        93 d~~~~~~~~~------~~~~~~~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~~~~---~~~~~-----~~~~~~p~~i~  156 (270)
T 1rwi_B           93 AAGSNNQTVL------PFDGLNYPEGLAV--DTQGAVYVADRGNNRVVKLAAGSKT---QTVLP-----FTGLNDPDGVA  156 (270)
T ss_dssp             CTTCSCCEEC------CCCSCSSEEEEEE--CTTCCEEEEEGGGTEEEEECTTCCS---CEECC-----CCSCCSCCCEE
T ss_pred             eCCCceEeee------ecCCcCCCcceEE--CCCCCEEEEECCCCEEEEEECCCce---eEeec-----cccCCCceeEE
Confidence            9876543211      0122356889998  8888877777778899999754311   11111     11223567899


Q ss_pred             eccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceE
Q psy17342        227 FPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVH  306 (401)
Q Consensus       227 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  306 (401)
                      ++ ++++++++...++.|++|+.....  .......+...+.++++.++      +.++++...++.|.+||........
T Consensus       157 ~~-~~g~l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~d~~------g~l~v~~~~~~~v~~~~~~~~~~~~  227 (270)
T 1rwi_B          157 VD-NSGNVYVTDTDNNRVVKLEAESNN--QVVLPFTDITAPWGIAVDEA------GTVYVTEHNTNQVVKLLAGSTTSTV  227 (270)
T ss_dssp             EC-TTCCEEEEEGGGTEEEEECTTTCC--EEECCCSSCCSEEEEEECTT------CCEEEEETTTSCEEEECTTCSCCEE
T ss_pred             Ee-CCCCEEEEECCCCEEEEEecCCCc--eEeecccCCCCceEEEECCC------CCEEEEECCCCcEEEEcCCCCccee
Confidence            99 678877777778899999987543  12222233356789999987      6777777778899999986544332


Q ss_pred             EEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342        307 SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT  346 (401)
Q Consensus       307 ~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~  346 (401)
                      ....+...+.+++++|+|. ++++...++.|+++++...+
T Consensus       228 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          228 LPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CCCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCGGG
T ss_pred             eccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCCcc
Confidence            2222335689999999996 88888899999999987654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.65  E-value=1.6e-14  Score=138.97  Aligned_cols=289  Identities=10%  Similarity=-0.010  Sum_probs=172.1

Q ss_pred             cCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCC---CCCceEEEe-------cCCCeeEEEEeCCCCceEEEEecCC--
Q psy17342         74 STQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK---KTTPEFEFF-------CQSPVLSCCFAKFNPYLILGGTYSG--  141 (401)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~---~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~g~~dg--  141 (401)
                      +|+|++++......       ....-.+|.....   ....+..+.       +...+..++||||+..++++.+.+|  
T Consensus       115 ~pdG~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e  187 (741)
T 1yr2_A          115 QRRGASVFYSWNSG-------LMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSD  187 (741)
T ss_dssp             EEETTEEEEEEECS-------SCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCS
T ss_pred             EEECCEEEEEEEcC-------CCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCc
Confidence            48999988877411       1112444544321   112222222       1226789999999854544444434  


Q ss_pred             --eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCc--------------EEEeeccCCCCCc
Q psy17342        142 --QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR--------------LCSWSLEMLSSPQ  205 (401)
Q Consensus       142 --~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~--------------i~~wd~~~~~~~~  205 (401)
                        .|++||+.+++....       ..+...+..++|  +|+ +.|+.++.++.              |.+|++.+.... 
T Consensus       188 ~~~i~v~dl~tg~~~~~-------~~~~~~~~~~~w--spD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~-  256 (741)
T 1yr2_A          188 WRTVKFVGVADGKPLAD-------ELKWVKFSGLAW--LGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA-  256 (741)
T ss_dssp             EEEEEEEETTTCCEEEE-------EEEEEESCCCEE--STT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGG-
T ss_pred             eEEEEEEECCCCCCCCc-------cCCCceeccEEE--ECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchh-
Confidence              599999998875321       111112246788  899 88888877654              888887642211 


Q ss_pred             cccccccccccCCccceEEEEeccCCCCeEEEEcCCc-----eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCC
Q psy17342        206 ETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG-----NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHID  280 (401)
Q Consensus       206 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~  280 (401)
                      ......   ...+...+..+.|+ +++++|+..+.++     .|++||+.+........+..+...+.... .|+     
T Consensus       257 ~~lv~~---~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~d-----  326 (741)
T 1yr2_A          257 DQPVFA---TPELPKRGHGASVS-SDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGV-----  326 (741)
T ss_dssp             CEEEEC---CTTCTTCEEEEEEC-TTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEE-----
T ss_pred             CEEEec---cCCCCeEEEEEEEC-CCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ecc-----
Confidence            111111   11133357899999 8999888776543     79999987542121334444554444443 366     


Q ss_pred             CCcEEEEEeC----CCeEEEEEeeCC--CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCC-CCCCCcceEE
Q psy17342        281 FSHLYLTSSY----DWSVKLWNIKEN--KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN-LDTEVPATSA  353 (401)
Q Consensus       281 ~~~~l~s~~~----d~~i~iwd~~~~--~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~  353 (401)
                       ++.|+..+.    ++.|.+||+.++  +....+..+...+..++|+ ++ .++++...|+..+||.+. .+.....+  
T Consensus       327 -g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~~~~l--  401 (741)
T 1yr2_A          327 -GDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GN-RLFASYIHDAKSQVLAFDLDGKPAGAV--  401 (741)
T ss_dssp             -TTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BT-EEEEEEEETTEEEEEEEETTSCEEEEC--
T ss_pred             -CCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCceeec--
Confidence             566666654    346999998774  2333344445556678887 33 488888899988877654 23322221  


Q ss_pred             eecCCCCeEEEEecCCCcEEEEE----ecCCcEEEEEeccCcccee
Q psy17342        354 IVEGAPALSRVTWTPNGTQLCVG----DEKGAITMFDVGEVGIACL  395 (401)
Q Consensus       354 ~~~~~~~v~~~~~s~~g~~l~~~----~~dg~v~iw~~~~~~~~~l  395 (401)
                      ..++...+..++++|+++.|+..    ...+.|++||+.+++.+.+
T Consensus       402 ~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l  447 (741)
T 1yr2_A          402 SLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW  447 (741)
T ss_dssp             BCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred             cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence            12345678889999998866633    3357899999988764444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.65  E-value=4.1e-14  Score=120.62  Aligned_cols=240  Identities=8%  Similarity=0.018  Sum_probs=158.6

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      ....+++|+|+++.|+.++.         .++.|..|+..++  ...+ ..+...+.+++++|++ +++++...++.|.+
T Consensus        28 ~~~eg~~~d~~g~~l~~~~~---------~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~   94 (296)
T 3e5z_A           28 TWTEGPVYVPARSAVIFSDV---------RQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQG-HLIACSHGLRRLER   94 (296)
T ss_dssp             SSEEEEEEEGGGTEEEEEEG---------GGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTTC-CEEEEETTTTEEEE
T ss_pred             ccccCCeEeCCCCEEEEEeC---------CCCEEEEEECCCC--eEEE-ECCCCCcceeeECCCC-cEEEEecCCCeEEE
Confidence            44788999999984444442         6889999999865  3222 3346678999999987 57766666689999


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-----------------CCcEEEeeccCCCCCcccc
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-----------------DGRLCSWSLEMLSSPQETR  208 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~~wd~~~~~~~~~~~  208 (401)
                      ||..+++....... . .......+..+++  .++|.++++.+.                 .+.|..++..  +...   
T Consensus        95 ~d~~~g~~~~~~~~-~-~~~~~~~~~~i~~--d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~---  165 (296)
T 3e5z_A           95 QREPGGEWESIADS-F-EGKKLNSPNDVCL--APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLS---  165 (296)
T ss_dssp             ECSTTCCEEEEECE-E-TTEECCCCCCEEE--CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEE---
T ss_pred             EcCCCCcEEEEeec-c-CCCCCCCCCCEEE--CCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEE---
Confidence            99977654322110 0 0111234567888  889988887321                 2344444432  1111   


Q ss_pred             ccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCc---eeeecCCCCceeeeecCccCCCCCCCcEE
Q psy17342        209 DLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGN---VECYEGHEGPVVGLSSHRAQGHIDFSHLY  285 (401)
Q Consensus       209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~~~~~~l  285 (401)
                      .+     ..+......++|+ ++++.+++.+.++.|++|++... ...   ...+..+...+.++++.++      ++++
T Consensus       166 ~~-----~~~~~~~~gi~~s-~dg~~lv~~~~~~~i~~~~~~~~-g~~~~~~~~~~~~~~~p~~i~~d~~------G~l~  232 (296)
T 3e5z_A          166 AP-----IRDRVKPNGLAFL-PSGNLLVSDTGDNATHRYCLNAR-GETEYQGVHFTVEPGKTDGLRVDAG------GLIW  232 (296)
T ss_dssp             EE-----ECCCSSEEEEEEC-TTSCEEEEETTTTEEEEEEECSS-SCEEEEEEEECCSSSCCCSEEEBTT------SCEE
T ss_pred             Ee-----ecCCCCCccEEEC-CCCCEEEEeCCCCeEEEEEECCC-CcCcCCCeEeeCCCCCCCeEEECCC------CCEE
Confidence            11     1133456889999 78888877888899999998621 112   2233335566778999988      6766


Q ss_pred             EEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEE-CCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342        286 LTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQW-SPINPALFATVEVAGRVDLWNLNLDT  346 (401)
Q Consensus       286 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~-~~~~~~~l~~~~~d~~i~iwd~~~~~  346 (401)
                      ++.  ++.|.+||.. ++.+..+..+.. +.+++| .|+++ .|++++.+ .+.-++.++.+
T Consensus       233 v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~-~L~v~t~~-~l~~~~~~~~~  288 (296)
T 3e5z_A          233 ASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGR-TLYMTVST-EFWSIETNVRG  288 (296)
T ss_dssp             EEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSC-EEEEEETT-EEEEEECSCCB
T ss_pred             EEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCC-EEEEEcCC-eEEEEEccccc
Confidence            665  8899999986 777888887766 899999 68887 45555554 45555665543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.64  E-value=3.2e-13  Score=124.36  Aligned_cols=275  Identities=11%  Similarity=0.041  Sum_probs=176.3

Q ss_pred             CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECC--CCCCCceeeccccccCCCCcEEE
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTR--VQKKTPVHRTPLSVMAHTHPVFC  172 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~--~~~~~~~~~~~~~~~~~~~~v~~  172 (401)
                      .++.|.++|..+++.+.++..  ...+..+.|+|++ +++++++.++.|.+||+.  +.+..  ..    +.. ......
T Consensus       175 ~~~~V~viD~~t~~v~~~i~~--g~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~~v--~~----i~~-G~~P~~  244 (567)
T 1qks_A          175 DAGQIALIDGSTYEIKTVLDT--GYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTV--AE----IKI-GSEARS  244 (567)
T ss_dssp             TTTEEEEEETTTCCEEEEEEC--SSCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEE--EE----EEC-CSEEEE
T ss_pred             CCCeEEEEECCCCeEEEEEeC--CCCccceEECCCC-CEEEEEcCCCeEEEEECCCCCCcEe--EE----Eec-CCCCce
Confidence            789999999998876655543  4567899999988 567777789999999996  44322  11    122 234568


Q ss_pred             EEEeec----CCceEEEEEeC-CCcEEEeeccCCCCCcccccccccccc---CC-ccceEEEEeccCCCCeEEEEcCCce
Q psy17342        173 MSVIGT----QNAHNLISISN-DGRLCSWSLEMLSSPQETRDLQYNNKQ---TK-NLAVLSLAFPQNDVNNFVVGCEDGN  243 (401)
Q Consensus       173 ~~~~~~----~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~---~~-~~~v~~~~~~~~~~~~l~~~~~d~~  243 (401)
                      ++|  +    |+|+++++++. ++++.++|..+.. +...+........   .| ...+..+..++.....++.....|.
T Consensus       245 ia~--s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~-~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~  321 (567)
T 1qks_A          245 IET--SKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  321 (567)
T ss_dssp             EEE--CCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             eEE--ccccCCCCCEEEEEEccCCeEEEEECCCCc-EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence            888  7    68988777665 5899999987632 2222222110000   01 2257778888444455666677899


Q ss_pred             EEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe-CCCeEEEEEeeCCCceEEEee-----cCCceEE
Q psy17342        244 VYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS-YDWSVKLWNIKENKPVHSFNE-----FRDYVMD  317 (401)
Q Consensus       244 i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~  317 (401)
                      |.++|........+..+. .......+.|+|+      +++|+++. .+++|.++|+.+++.+..+..     |.+.-..
T Consensus       322 v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pd------gr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~  394 (567)
T 1qks_A          322 ILLVDYTDLNNLKTTEIS-AERFLHDGGLDGS------HRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN  394 (567)
T ss_dssp             EEEEETTCSSEEEEEEEE-CCSSEEEEEECTT------SCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE
T ss_pred             EEEEecCCCccceeeeee-ccccccCceECCC------CCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee
Confidence            999998754321222222 3345667889998      67665554 578999999999987776654     3321212


Q ss_pred             EEECCCCCcEEEEEe-cCCEEEEEeCCCCCC----CcceEEeecCCCCeEEEEecCCCcEEEEEec-------CCcEEEE
Q psy17342        318 VQWSPINPALFATVE-VAGRVDLWNLNLDTE----VPATSAIVEGAPALSRVTWTPNGTQLCVGDE-------KGAITMF  385 (401)
Q Consensus       318 v~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-------dg~v~iw  385 (401)
                      + ++|++..+++++. .++.|.++|..+.+.    .............-..+..+|++++|.+...       ..+|.++
T Consensus       395 ~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~  473 (567)
T 1qks_A          395 F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVF  473 (567)
T ss_dssp             E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEE
T ss_pred             e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEE
Confidence            2 5887544666654 468999999987321    1122211111222234778999999988763       3589999


Q ss_pred             EeccC
Q psy17342        386 DVGEV  390 (401)
Q Consensus       386 ~~~~~  390 (401)
                      |+.+.
T Consensus       474 d~~~~  478 (567)
T 1qks_A          474 DIKAM  478 (567)
T ss_dssp             EGGGC
T ss_pred             ECCcc
Confidence            99876

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.63  E-value=1.9e-12  Score=110.36  Aligned_cols=278  Identities=9%  Similarity=0.027  Sum_probs=183.7

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-cCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-CQSPVLSCCFAKFNPYLILGGTYSGQIV  144 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~v~  144 (401)
                      ..+.++++.++|+..++..          .++.|.+||.. ++.. .+... ....+.++++.+++ .+.++...++.|.
T Consensus        20 ~~p~~i~~d~~g~l~v~~~----------~~~~v~~~~~~-~~~~-~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~   86 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQH----------KANKISSLDQS-GRIK-EFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIG   86 (300)
T ss_dssp             CCEEEEEECTTSCEEEEET----------TTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTS-CEEEEETTTTEEE
T ss_pred             CCcceeeECCCCCEEEEcC----------CCCeEEEECCC-CceE-EEECCCCCCcceeEEECCCC-CEEEEecCCCeEE
Confidence            5689999999997555443          57899999987 4332 22222 23678999999877 5666655578899


Q ss_pred             EEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342        145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS  224 (401)
Q Consensus       145 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (401)
                      .+|.. ++.. .    .........+.++++  .+++..+++...++.|..++..  +... ...+.     .....+..
T Consensus        87 ~~d~~-g~~~-~----~~~~~~~~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~--g~~~-~~~~~-----~~~~~~~~  150 (300)
T 2qc5_A           87 KLSKK-GGFT-E----YPLPQPDSGPYGITE--GLNGDIWFTQLNGDRIGKLTAD--GTIY-EYDLP-----NKGSYPAF  150 (300)
T ss_dssp             EECTT-SCEE-E----EECSSTTCCEEEEEE--CSTTCEEEEETTTTEEEEECTT--SCEE-EEECS-----STTCCEEE
T ss_pred             EECCC-CCeE-E----ecCCCCCCCCccceE--CCCCCEEEEccCCCeEEEECCC--CCEE-EccCC-----CCCCCcee
Confidence            99987 4321 1    111223467889988  7888888877778889999875  2111 11111     13346789


Q ss_pred             EEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc
Q psy17342        225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP  304 (401)
Q Consensus       225 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  304 (401)
                      +++. ++++++++...++.|..++.... . .......+...+.++++.++      +.++++....+.|.+||. +++.
T Consensus       151 i~~d-~~g~l~v~~~~~~~i~~~~~~g~-~-~~~~~~~~~~~~~~i~~d~~------g~l~v~~~~~~~i~~~~~-~g~~  220 (300)
T 2qc5_A          151 ITLG-SDNALWFTENQNNSIGRITNTGK-L-EEYPLPTNAAAPVGITSGND------GALWFVEIMGNKIGRITT-TGEI  220 (300)
T ss_dssp             EEEC-TTSSEEEEETTTTEEEEECTTCC-E-EEEECSSTTCCEEEEEECTT------SSEEEEETTTTEEEEECT-TCCE
T ss_pred             EEEC-CCCCEEEEecCCCeEEEECCCCc-E-EEeeCCCCCCCcceEEECCC------CCEEEEccCCCEEEEEcC-CCcE
Confidence            9999 77886666666889999987422 1 11122234456788999987      677777666778999998 4543


Q ss_pred             eEE-EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEE
Q psy17342        305 VHS-FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAIT  383 (401)
Q Consensus       305 ~~~-~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~  383 (401)
                      ... +..+...+.+++++++|. ++++...++.|..||.. +.. ..+.. ......+.+++++++|+++++.. . .|.
T Consensus       221 ~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~-g~~-~~~~~-~~~~~~~~~i~~~~~g~l~v~~~-~-~i~  294 (300)
T 2qc5_A          221 SEYDIPTPNARPHAITAGKNSE-IWFTEWGANQIGRITND-NTI-QEYQL-QTENAEPHGITFGKDGSVWFALK-C-KIG  294 (300)
T ss_dssp             EEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCE-EEEEC-CSTTCCCCCEEECTTSCEEEECS-S-EEE
T ss_pred             EEEECCCCCCCceEEEECCCCC-EEEeccCCCeEEEECCC-CcE-EEEEC-CccCCccceeEeCCCCCEEEEcc-C-ceE
Confidence            332 223345688999999997 66766667899999983 322 22221 12345678899999998666555 4 677


Q ss_pred             EEEec
Q psy17342        384 MFDVG  388 (401)
Q Consensus       384 iw~~~  388 (401)
                      .++.+
T Consensus       295 ~~~p~  299 (300)
T 2qc5_A          295 KLNLN  299 (300)
T ss_dssp             EEEEC
T ss_pred             EeCCC
Confidence            77754

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.63  E-value=9.4e-14  Score=121.21  Aligned_cols=229  Identities=11%  Similarity=0.090  Sum_probs=146.9

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEec------
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTY------  139 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~------  139 (401)
                      ..+..++|+|||+.|+.++...     ......|.+|++.+++...  ...... +..++|+|++..+++++..      
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~-----~~~~~~l~~~~~~~g~~~~--l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~  130 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANE-----EKKVSEIWVADLETLSSKK--ILEAKN-IRSLEWNEDSRKLLIVGFKRREDED  130 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEET-----TTTEEEEEEEETTTTEEEE--EEEESE-EEEEEECTTSSEEEEEEECCCC---
T ss_pred             ccCCCeEECCCCCEEEEEEecc-----CCCcceEEEEECCCCceEE--EEcCCC-ccceeECCCCCEEEEEEccCCCcCC
Confidence            3478899999999999887310     0012347788887654332  222234 9999999988544444322      


Q ss_pred             --------------------CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC-------c
Q psy17342        140 --------------------SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG-------R  192 (401)
Q Consensus       140 --------------------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-------~  192 (401)
                                          ...|.+||+.+++....    +  .. . .+..+.|  +|++ .++++..++       .
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~----l--~~-~-~~~~~~~--spdg-~~~~~~~~~~~~~~~~~  199 (347)
T 2gop_A          131 FIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEE----F--EK-P-RFSSGIW--HRDK-IVVNVPHREIIPQYFKF  199 (347)
T ss_dssp             ------CCCC---------CEEEEEEEETTTTEEEEE----E--EE-E-TTCEEEE--ETTE-EEEEEECCCSSCCSSCC
T ss_pred             cEEEcccceeecCcccccCccceEEEEECCCCeEEee----e--cC-C-CcccccC--CCCe-EEEEEeccccccccccc
Confidence                                25788999987653111    1  11 2 6778888  8999 777776542       4


Q ss_pred             EEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC--------ceEEEEeCCCCCCCceeeecCCC
Q psy17342        193 LCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED--------GNVYSACRHGNKAGNVECYEGHE  264 (401)
Q Consensus       193 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~~~~~~~~~~~~~~~~~~~~  264 (401)
                      ..+|.+. .+..   ..+..     + ..+..+  + |+++.|+.++.+        ..|++|| . .  ........+.
T Consensus       200 ~~l~~~d-~~~~---~~l~~-----~-~~~~~~--s-pdg~~l~~~~~~~~~~~~~~~~l~~~d-~-~--~~~~l~~~~~  262 (347)
T 2gop_A          200 WDIYIWE-DGKE---EKMFE-----K-VSFYAV--D-SDGERILLYGKPEKKYMSEHNKLYIYD-G-K--EVMGILDEVD  262 (347)
T ss_dssp             EEEEEEE-TTEE---EEEEE-----E-ESEEEE--E-ECSSCEEEEECCSSSCCCSSCEEEEEC-S-S--CEEESSTTCC
T ss_pred             ccEEEeC-CCce---EEecc-----C-cceeeE--C-CCCCEEEEEEccccCCccccceEEEEC-C-C--ceEeccccCC
Confidence            5666554 1211   11211     2 334444  6 788888877644        4688888 2 2  2333445567


Q ss_pred             Cceee-eecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEE-EEEeC
Q psy17342        265 GPVVG-LSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRV-DLWNL  342 (401)
Q Consensus       265 ~~v~~-i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i-~iwd~  342 (401)
                      ..+.. +.|+ +      + ++++++.++.++|| +.+++. ..+..+...|.+++|+|  . ++++++.++.. .||.+
T Consensus       263 ~~~~~~~~~s-d------g-~~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~-~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          263 RGVGQAKIKD-G------K-VYFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--I-VVYLKETATRLRELFTW  329 (347)
T ss_dssp             SEEEEEEEET-T------E-EEEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--S-EEEEEECSSSCCEEEEE
T ss_pred             cccCCccEEc-C------c-EEEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--c-EEEEEcCCCChHHheEe
Confidence            77886 8898 6      7 88899999999999 886654 44444577899999999  4 66666666654 67766


Q ss_pred             C
Q psy17342        343 N  343 (401)
Q Consensus       343 ~  343 (401)
                      .
T Consensus       330 ~  330 (347)
T 2gop_A          330 D  330 (347)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.63  E-value=8.3e-14  Score=133.04  Aligned_cols=253  Identities=8%  Similarity=-0.065  Sum_probs=162.6

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC-ceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT-PEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      |...+..++|||||++||.+...     .++.+..|++||+.+++.+ .. ... ......++|+|++ +.|+.++.+..
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~-----~G~~~~~i~v~dl~tg~~~~~~-~~~-~~~~~~~~wspDg-~~l~~~~~d~~  190 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKP-----NAADEAVLHVIDVDSGEWSKVD-VIE-GGKYATPKWTPDS-KGFYYEWLPTD  190 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEE-----TTCSCCEEEEEETTTCCBCSSC-CBS-CCTTCCCEECTTS-SEEEEEECCCC
T ss_pred             CCEEEEEEEECCCCCEEEEEECC-----CCCceEEEEEEECCCCCCcCCc-ccC-cccccceEEecCC-CEEEEEEecCC
Confidence            34578999999999999877631     2234579999999987765 22 111 1122689999988 45555556554


Q ss_pred             -------------EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC----cEEEeeccCCCCCc
Q psy17342        143 -------------IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG----RLCSWSLEMLSSPQ  205 (401)
Q Consensus       143 -------------v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~~wd~~~~~~~~  205 (401)
                                   |++|++.++......  ......|...+..+.|  +++|++|+.++.++    .|.+|+... .   
T Consensus       191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~l--v~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~l~~~~~~~-~---  262 (695)
T 2bkl_A          191 PSIKVDERPGYTTIRYHTLGTEPSKDTV--VHERTGDPTTFLQSDL--SRDGKYLFVYILRGWSENDVYWKRPGE-K---  262 (695)
T ss_dssp             TTSCGGGGGGGCEEEEEETTSCGGGCEE--EECCCCCTTCEEEEEE--CTTSCCEEEEEEETTTEEEEEEECTTC-S---
T ss_pred             CCCccccCCCCCEEEEEECCCCchhceE--EEecCCCCEEEEEEEE--CCCCCEEEEEEeCCCCceEEEEEcCCC-C---
Confidence                         999999877532111  0122345567889999  99999998877665    555554432 1   


Q ss_pred             cccccccccccCCccceEEEEeccCCCCeEEEEc---CCceEEEEeCCCCCCCceeeecCC--CCceeeeecCccCCCCC
Q psy17342        206 ETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC---EDGNVYSACRHGNKAGNVECYEGH--EGPVVGLSSHRAQGHID  280 (401)
Q Consensus       206 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~~~~~~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~~  280 (401)
                      ....+..     +...+....++  ++.+++.+.   .++.|++|++..........+..+  ...+..+++. .     
T Consensus       263 ~~~~l~~-----~~~~~~~~~~~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~-----  329 (695)
T 2bkl_A          263 DFRLLVK-----GVGAKYEVHAW--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-G-----  329 (695)
T ss_dssp             SCEEEEE-----CSSCCEEEEEE--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-T-----
T ss_pred             ceEEeec-----CCCceEEEEec--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-C-----
Confidence            1111211     33344555554  444444443   257899999864321112333333  4567778887 3     


Q ss_pred             CCcEEEEEeCCCeEEEEEee-CCCceEEEeec-CCceEEEEECCCCCcEEEEEec---CCEEEEEeCCCCC
Q psy17342        281 FSHLYLTSSYDWSVKLWNIK-ENKPVHSFNEF-RDYVMDVQWSPINPALFATVEV---AGRVDLWNLNLDT  346 (401)
Q Consensus       281 ~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~-~~~v~~v~~~~~~~~~l~~~~~---d~~i~iwd~~~~~  346 (401)
                       +.++++...|+..+||.+. +++....+..+ .+.+..++++|+++.++++.+.   .+.|++||+.+++
T Consensus       330 -~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          330 -GHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             -TEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             -CEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence             5888999999999998776 45556666554 5678889999998755555443   4689999998765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.61  E-value=2.4e-13  Score=114.08  Aligned_cols=215  Identities=11%  Similarity=0.000  Sum_probs=153.6

Q ss_pred             ceEEEEecCCeEEEEECCCCCCCceeeccccccCCC-CcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccc
Q psy17342        132 YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHT-HPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDL  210 (401)
Q Consensus       132 ~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~  210 (401)
                      ++|++++.++.|.+||.++++....      +..+. ..+.++.+  .|+++.++  +.++.|..||. + ++....+..
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~w~------~~~~~~~~~~~~~~--~pdG~ilv--s~~~~V~~~d~-~-G~~~W~~~~   73 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIVWE------YPLEKGWECNSVAA--TKAGEILF--SYSKGAKMITR-D-GRELWNIAA   73 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEEEE------EECCTTCCCCEEEE--CTTSCEEE--ECBSEEEEECT-T-SCEEEEEEC
T ss_pred             cEEEeeCCCCEEEEEECCCCeEEEE------eCCCccCCCcCeEE--CCCCCEEE--eCCCCEEEECC-C-CCEEEEEcC
Confidence            6899999999999999988875432      23333 46778888  89998888  45778999987 3 222222221


Q ss_pred             ccccccCCccceEEEEeccCCCCeEEEEcC-CceEEEEeCCCCCCCceeeec------CCCCceeeeecCccCCCCCCCc
Q psy17342        211 QYNNKQTKNLAVLSLAFPQNDVNNFVVGCE-DGNVYSACRHGNKAGNVECYE------GHEGPVVGLSSHRAQGHIDFSH  283 (401)
Q Consensus       211 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~~~~~------~~~~~v~~i~~~~~~~~~~~~~  283 (401)
                            +....+.++.+. ++++.+++.+. ++.+..++..+.   .+..+.      .+......+...++      ++
T Consensus        74 ------~~~~~~~~~~~~-~dG~~lv~~~~~~~~v~~vd~~Gk---~l~~~~~~~~~~~~~~~~~~v~~~~~------G~  137 (276)
T 3no2_A           74 ------PAGCEMQTARIL-PDGNALVAWCGHPSTILEVNMKGE---VLSKTEFETGIERPHAQFRQINKNKK------GN  137 (276)
T ss_dssp             ------CTTCEEEEEEEC-TTSCEEEEEESTTEEEEEECTTSC---EEEEEEECCSCSSGGGSCSCCEECTT------SC
T ss_pred             ------CCCccccccEEC-CCCCEEEEecCCCCEEEEEeCCCC---EEEEEeccCCCCcccccccCceECCC------CC
Confidence                  122467788888 89999998887 888888876432   333332      12233455666676      78


Q ss_pred             EEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee-c--CCCC
Q psy17342        284 LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV-E--GAPA  360 (401)
Q Consensus       284 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~--~~~~  360 (401)
                      ++++...++.|..||.. ++.+.++... ..+.++...+++. ++++++.++.|..+|..+++.+..+.... .  .-..
T Consensus       138 ~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~  214 (276)
T 3no2_A          138 YLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFF  214 (276)
T ss_dssp             EEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSE
T ss_pred             EEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccc
Confidence            99999999999999987 9999988864 4566788899987 77777778899999999888766654211 1  1123


Q ss_pred             eEEEEecCCCcEEEEEe
Q psy17342        361 LSRVTWTPNGTQLCVGD  377 (401)
Q Consensus       361 v~~~~~s~~g~~l~~~~  377 (401)
                      +..++..++|..+++..
T Consensus       215 ~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          215 VAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEEEECTTSCEEEEEE
T ss_pred             cccceEcCCCCEEEEec
Confidence            67888899999888763

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.61  E-value=2.9e-12  Score=112.28  Aligned_cols=267  Identities=8%  Similarity=-0.007  Sum_probs=160.9

Q ss_pred             EEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEe---------cCCeEEEEECCCCCCCceeecc-ccccCCC
Q psy17342         98 VCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGT---------YSGQIVLWDTRVQKKTPVHRTP-LSVMAHT  167 (401)
Q Consensus        98 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~---------~dg~v~iw~~~~~~~~~~~~~~-~~~~~~~  167 (401)
                      .|.++|..+++.+.++..+  ... .++++|+++.+.++..         .++.|.+||..+.+........ ..-..+.
T Consensus        48 ~v~v~D~~t~~~~~~i~~g--~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g  124 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGG--FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVG  124 (373)
T ss_pred             EEEEEECCCCeEEEEecCC--CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccC
Confidence            8999999987765443322  223 9999999854444431         3678999999876543221110 0000011


Q ss_pred             CcEEEEEEeecCCceEEEEEeC--CCcEEEeeccCCCCCccc-cccccccccCCccceEEEEeccCCCCeEEEEcCCceE
Q psy17342        168 HPVFCMSVIGTQNAHNLISISN--DGRLCSWSLEMLSSPQET-RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNV  244 (401)
Q Consensus       168 ~~v~~~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  244 (401)
                      ..-..+.+  +|++++|+.+..  ++.|.++| .+. +.... ..+.           .++.+.|.....+++.+.||.+
T Consensus       125 ~~p~~~~~--spDG~~l~v~n~~~~~~v~viD-~t~-~~~~~~i~~~-----------~~~~~~~~~~~~~~~~~~dg~~  189 (373)
T 2mad_H          125 PYSWMNAN--TPNNADLLFFQFAAGPAVGLVV-QGG-SSDDQLLSSP-----------TCYHIHPGAPSTFYLLCAQGGL  189 (373)
T ss_pred             CCccceEE--CCCCCEEEEEecCCCCeEEEEE-CCC-CEEeEEcCCC-----------ceEEEEeCCCceEEEEcCCCCE
Confidence            23447788  999999998874  47899999 753 22222 2111           1234443445567777889999


Q ss_pred             EEEeCCCCCCCceeeec-----CCCCce-eeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC--ceEEEee------
Q psy17342        245 YSACRHGNKAGNVECYE-----GHEGPV-VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK--PVHSFNE------  310 (401)
Q Consensus       245 ~~~~~~~~~~~~~~~~~-----~~~~~v-~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~------  310 (401)
                      .+++. ..+  ......     ....++ ....+.+..     +.+++.. ..+.+.+.|+....  .+..+..      
T Consensus       190 ~~vd~-~g~--~~~~~~~~~~~~~~~p~~~~~~~~~~~-----~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~  260 (373)
T 2mad_H          190 AKTDH-AGG--AAGAGLVGAMLTAAQNLLTQPAQANKS-----GRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRK  260 (373)
T ss_pred             EEEEC-CCc--EEEEEeccccccCCcceeecceeEecC-----CEEEEEc-CCceEEEEeccCCcceEeeeeeecCCccc
Confidence            99988 332  121111     111221 123344442     3444443 57899999986542  2222221      


Q ss_pred             ----cCCceEEEEECCCCCcEEEEEe---------cCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc-EEEEE
Q psy17342        311 ----FRDYVMDVQWSPINPALFATVE---------VAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT-QLCVG  376 (401)
Q Consensus       311 ----~~~~v~~v~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~  376 (401)
                          .......+.++|+++.++++..         .++.|.++|..+.+.+..+.    .......++|+|||+ .++++
T Consensus       261 ~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~----~g~~p~~i~~s~Dg~~~l~v~  336 (373)
T 2mad_H          261 ADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS----LGHDVDAISVAQDGGPDLYAL  336 (373)
T ss_pred             ccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE----CCCCcCeEEECCCCCeEEEEE
Confidence                1223445788999885555443         24689999999887655543    233578999999999 77777


Q ss_pred             e-cCCcEEEEEeccCccceeee
Q psy17342        377 D-EKGAITMFDVGEVGIACLKF  397 (401)
Q Consensus       377 ~-~dg~v~iw~~~~~~~~~l~~  397 (401)
                      . .++.|.++|+.+++  .++.
T Consensus       337 ~~~~~~V~ViD~~t~~--vv~~  356 (373)
T 2mad_H          337 SAGTEVLHIYDAGAGD--QDQS  356 (373)
T ss_pred             cCCCCeEEEEECCCCC--EEee
Confidence            6 58999999999984  4444

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.60  E-value=2.3e-12  Score=110.61  Aligned_cols=248  Identities=13%  Similarity=0.085  Sum_probs=160.3

Q ss_pred             CCCeeEEEEeCCCCceEEE-------EecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC-ceEEEEEeC
Q psy17342        118 QSPVLSCCFAKFNPYLILG-------GTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN-AHNLISISN  189 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~-------g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~  189 (401)
                      -....+++|.+++ .++++       +..++.|.+||..+++...... + ...++...+.++++  .++ +.++++.. 
T Consensus        17 ~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~-~~~~~~~~~~~i~~--~~~~g~l~v~~~-   90 (314)
T 1pjx_A           17 IPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-P-EVNGYGGIPAGCQC--DRDANQLFVADM-   90 (314)
T ss_dssp             CTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-C-EETTEECCEEEEEE--CSSSSEEEEEET-
T ss_pred             CCCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-c-ccCCCCCCCceEEE--ecCCCcEEEEEC-
Confidence            3466899999877 67766       5678899999987765422110 0 01124567889998  888 66555554 


Q ss_pred             CCcEEEeeccCCCCCccc-cccccccccCCccceEEEEeccCCCCeEEEEcCC---------------ceEEEEeCCCCC
Q psy17342        190 DGRLCSWSLEMLSSPQET-RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED---------------GNVYSACRHGNK  253 (401)
Q Consensus       190 dg~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------------~~i~~~~~~~~~  253 (401)
                      .+.|.+||..  +..... ....   .......+.+++++ ++++++++...+               +.|+.++.. ..
T Consensus        91 ~~~l~~~d~~--g~~~~~~~~~~---~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~  163 (314)
T 1pjx_A           91 RLGLLVVQTD--GTFEEIAKKDS---EGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ  163 (314)
T ss_dssp             TTEEEEEETT--SCEEECCSBCT---TSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC
T ss_pred             CCCEEEEeCC--CCEEEEEeccC---CCccccCCcCEEEC-CCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC
Confidence            4478889876  222111 1110   01123457899999 788777766554               577777764 21


Q ss_pred             CCceeeecCCCCceeeeecC----ccCCCCCCCcE-EEEEeCCCeEEEEEee-CCCc-----eEEEeecC-CceEEEEEC
Q psy17342        254 AGNVECYEGHEGPVVGLSSH----RAQGHIDFSHL-YLTSSYDWSVKLWNIK-ENKP-----VHSFNEFR-DYVMDVQWS  321 (401)
Q Consensus       254 ~~~~~~~~~~~~~v~~i~~~----~~~~~~~~~~~-l~s~~~d~~i~iwd~~-~~~~-----~~~~~~~~-~~v~~v~~~  321 (401)
                         ...+..+......++++    |+      ++. +++...++.|.+||.. +++.     ...+..+. ..+..++++
T Consensus       164 ---~~~~~~~~~~~~~i~~~~~~d~d------g~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d  234 (314)
T 1pjx_A          164 ---MIQVDTAFQFPNGIAVRHMNDGR------PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD  234 (314)
T ss_dssp             ---EEEEEEEESSEEEEEEEECTTSC------EEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred             ---EEEeccCCCCcceEEEecccCCC------CCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence               22222233456788888    87      544 4555568899999987 3432     22233333 567899999


Q ss_pred             CCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEE-EecCCcEEEEEeccCc
Q psy17342        322 PINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCV-GDEKGAITMFDVGEVG  391 (401)
Q Consensus       322 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~dg~v~iw~~~~~~  391 (401)
                      ++|. ++++...++.|.+||..+++....+.   .+...+.+++|+++|+.|++ ...++.|..|++...+
T Consensus       235 ~~G~-l~v~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g  301 (314)
T 1pjx_A          235 EDNN-LLVANWGSSHIEVFGPDGGQPKMRIR---CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             TTCC-EEEEEETTTEEEEECTTCBSCSEEEE---CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             CCCC-EEEEEcCCCEEEEEcCCCCcEeEEEe---CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence            9996 77777678899999988665544432   23467899999999995554 4556789999997654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.60  E-value=7.1e-13  Score=114.64  Aligned_cols=294  Identities=9%  Similarity=0.020  Sum_probs=180.0

Q ss_pred             EEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEe---------cCC
Q psy17342         71 MDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGT---------YSG  141 (401)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~---------~dg  141 (401)
                      ....|+++.+.+.....     ...++.|.+.|..+.+.+.++..+ ..+ . ++++|+++.+.++..         .++
T Consensus        38 ~~~~pd~~~vyV~~~~~-----~~~~~~V~ViD~~t~~v~~~I~vG-~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~  109 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAH-----FAAVTQQFVIDGEAGRVIGMIDGG-FLP-N-PVVADDGSFIAHASTVFSRIARGERTD  109 (386)
T ss_dssp             CCCCCCTTEEEEEECGG-----GCSSEEEEEEETTTTEEEEEEEEC-SSC-E-EEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred             eccCCCCCEEEEEcCcc-----cCCCCEEEEEECCCCeEEEEEECC-CCC-c-EEECCCCCEEEEEcccccccccCCCCC
Confidence            45578999888887310     001689999999988877766554 333 4 999999865544432         367


Q ss_pred             eEEEEECCCCCCCceeeccc-cccCCCCcEEEEEEeecCCceEEEEEeC--CCcEEEeeccCCCCCccccccccccccCC
Q psy17342        142 QIVLWDTRVQKKTPVHRTPL-SVMAHTHPVFCMSVIGTQNAHNLISISN--DGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      .|.+||..+.+.......+. .-......-..+.+  +|+|++++.+..  ++.|.++|+.+.. ....+.+..      
T Consensus       110 ~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~--spDGk~lyVan~~~~~~VsVID~~t~~-vv~tI~v~g------  180 (386)
T 3sjl_D          110 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL--TPDGKTLLFYQFSPAPAVGVVDLEGKA-FKRMLDVPD------  180 (386)
T ss_dssp             EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE--CTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECCS------
T ss_pred             EEEEEECCCCeEEEEEECCCccccccCCCCceEEE--cCCCCEEEEEEcCCCCeEEEEECCCCc-EEEEEECCC------
Confidence            89999999876543221100 00001123446777  999999888864  6889999998622 222221111      


Q ss_pred             ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCC----CCcee-eeecC-ccCCCCCCCcEEEEEeCCC
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGH----EGPVV-GLSSH-RAQGHIDFSHLYLTSSYDW  292 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~----~~~v~-~i~~~-~~~~~~~~~~~l~s~~~d~  292 (401)
                         + .. ..|.....+++.+.||.+.+.++.... +.......+    ..++. ...|. ++      +++++ .+.+|
T Consensus       181 ---~-~~-~~P~g~~~~~~~~~DG~~~~v~~~~~g-~v~~~~~~~~~~~~~~~~~~~~~~~~d------G~~~~-vs~~g  247 (386)
T 3sjl_D          181 ---C-YH-IFPTAPDTFFMHCRDGSLAKVAFGTEG-TPEITHTEVFHPEDEFLINHPAYSQKA------GRLVW-PTYTG  247 (386)
T ss_dssp             ---E-EE-EEEEETTEEEEEETTSCEEEEECCSSS-CCEEEECCCCSCTTSCBCSCCEEETTT------TEEEE-EBTTS
T ss_pred             ---c-ce-eecCCCceeEEECCCCCEEEEECCCCC-eEEEeecceeccccccccccceeEcCC------CcEEE-EeCCC
Confidence               1 11 223455667788888888888876411 111111111    12221 12333 23      44444 55589


Q ss_pred             eEEEEEeeCCC--ceEEEe----------ecCCceEEEEECCCCCcEEEEEec---------CCEEEEEeCCCCCCCcce
Q psy17342        293 SVKLWNIKENK--PVHSFN----------EFRDYVMDVQWSPINPALFATVEV---------AGRVDLWNLNLDTEVPAT  351 (401)
Q Consensus       293 ~i~iwd~~~~~--~~~~~~----------~~~~~v~~v~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~  351 (401)
                      +|.+.|+....  .+..+.          ...+....++++|+++.++++...         .+.|.+.|+.+.+.+..+
T Consensus       248 ~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i  327 (386)
T 3sjl_D          248 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF  327 (386)
T ss_dssp             EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE
T ss_pred             EEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEE
Confidence            99999986554  222332          012233457779998866665432         257999999998877665


Q ss_pred             EEeecCCCCeEEEEecCCCc-EEEEE-ecCCcEEEEEeccCccceeeeeec
Q psy17342        352 SAIVEGAPALSRVTWTPNGT-QLCVG-DEKGAITMFDVGEVGIACLKFITS  400 (401)
Q Consensus       352 ~~~~~~~~~v~~~~~s~~g~-~l~~~-~~dg~v~iw~~~~~~~~~l~~~~~  400 (401)
                      ..  +  ..++.+++++|++ .|++. ..++.|.++|..++  +.++++..
T Consensus       328 ~v--g--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~--k~~~~i~~  372 (386)
T 3sjl_D          328 EM--G--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG--EELRSVNQ  372 (386)
T ss_dssp             EE--E--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTC--CEEEEECC
T ss_pred             EC--C--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC--cEEEEecC
Confidence            53  2  3578999999996 66664 45899999999988  45665543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.58  E-value=8.9e-13  Score=110.59  Aligned_cols=211  Identities=9%  Similarity=0.016  Sum_probs=146.8

Q ss_pred             CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEE
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMS  174 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  174 (401)
                      .++.|.+||.++++.+-++..+....+.++.+.|++ +++++  .++.|..||. +++.......     .....+.++.
T Consensus        13 ~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG-~ilvs--~~~~V~~~d~-~G~~~W~~~~-----~~~~~~~~~~   83 (276)
T 3no2_A           13 GWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG-EILFS--YSKGAKMITR-DGRELWNIAA-----PAGCEMQTAR   83 (276)
T ss_dssp             TCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS-CEEEE--CBSEEEEECT-TSCEEEEEEC-----CTTCEEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC-CEEEe--CCCCEEEECC-CCCEEEEEcC-----CCCccccccE
Confidence            799999999988887765554322478999999987 67773  4778999998 5554322211     1234677888


Q ss_pred             EeecCCceEEEEEeC-CCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCC
Q psy17342        175 VIGTQNAHNLISISN-DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK  253 (401)
Q Consensus       175 ~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~  253 (401)
                      +  .++++.+++.+. ++.+..++..  ++......+... ...+......+++. ++++++++...++.|..||..+  
T Consensus        84 ~--~~dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~~-~~~~~~~~~~v~~~-~~G~~lv~~~~~~~v~~~d~~G--  155 (276)
T 3no2_A           84 I--LPDGNALVAWCGHPSTILEVNMK--GEVLSKTEFETG-IERPHAQFRQINKN-KKGNYLVPLFATSEVREIAPNG--  155 (276)
T ss_dssp             E--CTTSCEEEEEESTTEEEEEECTT--SCEEEEEEECCS-CSSGGGSCSCCEEC-TTSCEEEEETTTTEEEEECTTS--
T ss_pred             E--CCCCCEEEEecCCCCEEEEEeCC--CCEEEEEeccCC-CCcccccccCceEC-CCCCEEEEecCCCEEEEECCCC--
Confidence            7  899999999887 7777777653  322222222110 01122234455667 7899999999999999999863  


Q ss_pred             CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC------CceEEEEECCCCCcE
Q psy17342        254 AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR------DYVMDVQWSPINPAL  327 (401)
Q Consensus       254 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~v~~v~~~~~~~~~  327 (401)
                       +.+..+... ....++...++      ++++++++.+++|..+|..+++.+.++..+.      ..+..++..++|. +
T Consensus       156 -~~~w~~~~~-~~~~~~~~~~~------g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~-i  226 (276)
T 3no2_A          156 -QLLNSVKLS-GTPFSSAFLDN------GDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGG-L  226 (276)
T ss_dssp             -CEEEEEECS-SCCCEEEECTT------SCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSC-E
T ss_pred             -CEEEEEECC-CCccceeEcCC------CCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCC-E
Confidence             345666543 34556677776      7889888888899999999999999987532      2378889999997 5


Q ss_pred             EEEE
Q psy17342        328 FATV  331 (401)
Q Consensus       328 l~~~  331 (401)
                      +++.
T Consensus       227 ~v~~  230 (276)
T 3no2_A          227 YICN  230 (276)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5555

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.57  E-value=4.3e-13  Score=116.02  Aligned_cols=275  Identities=13%  Similarity=0.059  Sum_probs=166.6

Q ss_pred             EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEec------CCCeeEEEEeCCCCceEEEEe-cCCe
Q psy17342         70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC------QSPVLSCCFAKFNPYLILGGT-YSGQ  142 (401)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~g~-~dg~  142 (401)
                      .++++|||+++.++.....+...+..++.|.+||..+.+.+.++....      ......++|+|+++.++++.. .++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            499999999988775100000000135789999999887776665532      125678999999854444432 2689


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      |.++|..+.+......    ..+    . ...+  ......+++.+.||++.+.++........... ..  .......+
T Consensus       162 VsVID~~t~~vv~tI~----v~g----~-~~~~--P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~~--~~~~~~~~  227 (386)
T 3sjl_D          162 VGVVDLEGKAFKRMLD----VPD----C-YHIF--PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-EV--FHPEDEFL  227 (386)
T ss_dssp             EEEEETTTTEEEEEEE----CCS----E-EEEE--EEETTEEEEEETTSCEEEEECCSSSCCEEEEC-CC--CSCTTSCB
T ss_pred             EEEEECCCCcEEEEEE----CCC----c-ceee--cCCCceeEEECCCCCEEEEECCCCCeEEEeec-ce--eccccccc
Confidence            9999999887543321    111    1 1222  33445677888899999998865332211110 00  11111122


Q ss_pred             E-EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec---------C-CCCceeeeecCccCCCCCCCcEEEEEeC-
Q psy17342        223 L-SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE---------G-HEGPVVGLSSHRAQGHIDFSHLYLTSSY-  290 (401)
Q Consensus       223 ~-~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~---------~-~~~~v~~i~~~~~~~~~~~~~~l~s~~~-  290 (401)
                      . ...|.++++++++ .+.+|.+++.|..+........+.         + ..+....++++|..     +.++++-.. 
T Consensus       228 ~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~-----~~lyV~~~~~  301 (386)
T 3sjl_D          228 INHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL-----DRIYLLVDQR  301 (386)
T ss_dssp             CSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT-----TEEEEEEEEC
T ss_pred             cccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCC-----CeEEEEeccc
Confidence            1 2355435665444 566899999998755432222221         0 11233346667763     344444321 


Q ss_pred             --------CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCC-cEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCe
Q psy17342        291 --------DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINP-ALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPAL  361 (401)
Q Consensus       291 --------d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  361 (401)
                              ..+|.+.|+.+++.+.++.. ...+.+++++|+++ .++++...++.|.++|..+++.+..+..    ...-
T Consensus       302 ~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~----~~~p  376 (386)
T 3sjl_D          302 DEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ----LGHG  376 (386)
T ss_dssp             CTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC----CCSS
T ss_pred             cccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC----CCCC
Confidence                    25799999999999999886 44788999999996 3444456689999999999886655432    2334


Q ss_pred             EEEEecCC
Q psy17342        362 SRVTWTPN  369 (401)
Q Consensus       362 ~~~~~s~~  369 (401)
                      +.+.+++|
T Consensus       377 ~~l~~s~d  384 (386)
T 3sjl_D          377 PQVITTAD  384 (386)
T ss_dssp             CCEEEECC
T ss_pred             ceeEECCc
Confidence            45666665

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.57  E-value=1.2e-11  Score=105.15  Aligned_cols=239  Identities=6%  Similarity=-0.025  Sum_probs=164.6

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS  197 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd  197 (401)
                      ...+.++++.+++ ++.++...++.|.+||.. +....     .....+...+.++++  .+++..+++...++.|..|+
T Consensus        14 ~~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~-~~~~~-----~~~~~~~~~~~~i~~--~~~g~l~v~~~~~~~i~~~~   84 (299)
T 2z2n_A           14 DTGPYGITVSDKG-KVWITQHKANMISCINLD-GKITE-----YPLPTPDAKVMCLTI--SSDGEVWFTENAANKIGRIT   84 (299)
T ss_dssp             SCCEEEEEECTTS-CEEEEETTTTEEEEECTT-CCEEE-----EECSSTTCCEEEEEE--CTTSCEEEEETTTTEEEEEC
T ss_pred             CCCccceEECCCC-CEEEEecCCCcEEEEcCC-CCeEE-----ecCCcccCceeeEEE--CCCCCEEEeCCCCCeEEEEC
Confidence            3578999999977 566655557899999987 43221     111234567889998  88888888877788899998


Q ss_pred             ccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCC
Q psy17342        198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQG  277 (401)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  277 (401)
                      ...  . .....+.     .....+..+++. +++.++++...++.|..++... .. .......+...+..+++.|+  
T Consensus        85 ~~g--~-~~~~~~~-----~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~~g-~~-~~~~~~~~~~~~~~i~~~~~--  151 (299)
T 2z2n_A           85 KKG--I-IKEYTLP-----NPDSAPYGITEG-PNGDIWFTEMNGNRIGRITDDG-KI-REYELPNKGSYPSFITLGSD--  151 (299)
T ss_dssp             TTS--C-EEEEECS-----STTCCEEEEEEC-TTSCEEEEETTTTEEEEECTTC-CE-EEEECSSTTCCEEEEEECTT--
T ss_pred             CCC--c-EEEEeCC-----CcCCCceeeEEC-CCCCEEEEecCCceEEEECCCC-CE-EEecCCCCCCCCceEEEcCC--
Confidence            752  1 1111111     134468899999 6787777777788999998832 21 11122234456889999987  


Q ss_pred             CCCCCcEEEEEeCCCeEEEEEeeCCCceEE-EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeec
Q psy17342        278 HIDFSHLYLTSSYDWSVKLWNIKENKPVHS-FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVE  356 (401)
Q Consensus       278 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  356 (401)
                          +.++++...++.|..||. +++.... +..+...+.++++++++. ++++...++.|.+||. +++. ..+.. ..
T Consensus       152 ----g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~-~~~~~-~~  222 (299)
T 2z2n_A          152 ----NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGEI-TEFKI-PT  222 (299)
T ss_dssp             ----SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCE-EEEEC-SS
T ss_pred             ----CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CCcE-EEEEC-CC
Confidence                677777766789999998 6654432 222345688999999986 6776666889999998 5542 22211 12


Q ss_pred             CCCCeEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342        357 GAPALSRVTWTPNGTQLCVGDEKGAITMFDV  387 (401)
Q Consensus       357 ~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~  387 (401)
                      ....+..++++++|+++++...++.|..||.
T Consensus       223 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          223 PNARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             TTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             CCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence            3467889999999997776667788999998

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.56  E-value=7.3e-13  Score=114.44  Aligned_cols=247  Identities=7%  Similarity=-0.050  Sum_probs=158.3

Q ss_pred             ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEE
Q psy17342         67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLW  146 (401)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw  146 (401)
                      ....+.+.  +..+..+..         .++.|.+||.++++.+.++  ........+++++++ .+.++...++.|.+|
T Consensus        45 ~~~~i~~~--~~~lyv~~~---------~~~~v~viD~~t~~~~~~i--~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~i  110 (328)
T 3dsm_A           45 VAQSMVIR--DGIGWIVVN---------NSHVIFAIDINTFKEVGRI--TGFTSPRYIHFLSDE-KAYVTQIWDYRIFII  110 (328)
T ss_dssp             CEEEEEEE--TTEEEEEEG---------GGTEEEEEETTTCCEEEEE--ECCSSEEEEEEEETT-EEEEEEBSCSEEEEE
T ss_pred             cceEEEEE--CCEEEEEEc---------CCCEEEEEECcccEEEEEc--CCCCCCcEEEEeCCC-eEEEEECCCCeEEEE
Confidence            35667774  345555552         5789999999988766555  335678999998876 555555478999999


Q ss_pred             ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEe-CCCcEEEeeccCCCCCccccccccccccCCccceEEE
Q psy17342        147 DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS-NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL  225 (401)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (401)
                      |..+.+......... ..+.......+++   .++..+++.. .++.|.++|+.+.. .......        ......+
T Consensus       111 D~~t~~~~~~i~~g~-~~~~~~~p~~i~~---~~~~lyv~~~~~~~~v~viD~~t~~-~~~~i~~--------g~~p~~i  177 (328)
T 3dsm_A          111 NPKTYEITGYIECPD-MDMESGSTEQMVQ---YGKYVYVNCWSYQNRILKIDTETDK-VVDELTI--------GIQPTSL  177 (328)
T ss_dssp             ETTTTEEEEEEECTT-CCTTTCBCCCEEE---ETTEEEEEECTTCCEEEEEETTTTE-EEEEEEC--------SSCBCCC
T ss_pred             ECCCCeEEEEEEcCC-ccccCCCcceEEE---ECCEEEEEcCCCCCEEEEEECCCCe-EEEEEEc--------CCCccce
Confidence            998876432211100 0011123446665   2444455544 48899999987532 1111111        1234577


Q ss_pred             EeccCCCCeEEEEcCC----------ceEEEEeCCCCCCCceeeecCC-CCceeeeecCccCCCCCCCcEEEEEeCCCeE
Q psy17342        226 AFPQNDVNNFVVGCED----------GNVYSACRHGNKAGNVECYEGH-EGPVVGLSSHRAQGHIDFSHLYLTSSYDWSV  294 (401)
Q Consensus       226 ~~~~~~~~~l~~~~~d----------~~i~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i  294 (401)
                      +++ +++++++++..+          +.|+++|....+  ....+... ......++++|+      ++.+..+..  .|
T Consensus       178 ~~~-~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~--v~~~~~~~~g~~p~~la~~~d------~~~lyv~~~--~v  246 (328)
T 3dsm_A          178 VMD-KYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT--VEKQFKFKLGDWPSEVQLNGT------RDTLYWINN--DI  246 (328)
T ss_dssp             EEC-TTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE--EEEEEECCTTCCCEEEEECTT------SCEEEEESS--SE
T ss_pred             EEc-CCCCEEEEECCCccCCccccCCceEEEEECCCCe--EEEEEecCCCCCceeEEEecC------CCEEEEEcc--EE
Confidence            888 778776666554          789999987443  34344322 235789999998      566666554  89


Q ss_pred             EEEEeeCCCceEE--EeecCCceEEEEECCCCCcEEEEE----ecCCEEEEEeCCCCCCCcceE
Q psy17342        295 KLWNIKENKPVHS--FNEFRDYVMDVQWSPINPALFATV----EVAGRVDLWNLNLDTEVPATS  352 (401)
Q Consensus       295 ~iwd~~~~~~~~~--~~~~~~~v~~v~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~  352 (401)
                      .+||..+++....  +.........++++|++..++++.    ..++.|.+||.. ++.+..+.
T Consensus       247 ~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          247 WRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             EEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred             EEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence            9999987765321  221235688999999655577777    678899999998 76655543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.55  E-value=1.9e-12  Score=111.16  Aligned_cols=246  Identities=11%  Similarity=0.059  Sum_probs=159.9

Q ss_pred             cceEEEEecCCCCCeEE-------EEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE----ecCCCeeEEEEeCCCCceE
Q psy17342         66 RNVTYMDWSTQHPELLL-------ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF----FCQSPVLSCCFAKFNPYLI  134 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~-------~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l  134 (401)
                      ....+++|++++..+++       ..          .++.|.+||..+++.. .+..    .+...+.++++.+++.+++
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~----------~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~l~   86 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGK----------PAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQLF   86 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTE----------ECCEEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCC----------CCCEEEEEeCCCCcEE-EEEecccCCCCCCCceEEEecCCCcEE
Confidence            34678999999976666       34          4789999998766542 2221    1236789999999723555


Q ss_pred             EEEecCCeEEEEECCCCCCCce-eeccccccCCCCcEEEEEEeecCCceEEEEEeCC---------------CcEEEeec
Q psy17342        135 LGGTYSGQIVLWDTRVQKKTPV-HRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND---------------GRLCSWSL  198 (401)
Q Consensus       135 ~~g~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------------g~i~~wd~  198 (401)
                      ++. ..+.|.+||.. ++.... ..  .........+.++++  .+++..+++...+               +.|..++.
T Consensus        87 v~~-~~~~l~~~d~~-g~~~~~~~~--~~~~~~~~~~~~i~~--d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~  160 (314)
T 1pjx_A           87 VAD-MRLGLLVVQTD-GTFEEIAKK--DSEGRRMQGCNDCAF--DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT  160 (314)
T ss_dssp             EEE-TTTEEEEEETT-SCEEECCSB--CTTSCBCBCCCEEEE--CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred             EEE-CCCCEEEEeCC-CCEEEEEec--cCCCccccCCcCEEE--CCCCCEEEEecCcccccccccccccCCCCeEEEECC
Confidence            554 34579999987 443211 10  000112245788988  8888877776655               45666654


Q ss_pred             cCCCCCccccccccccccCCccceEEEEec----cCCCCe-EEEEcCCceEEEEeCCC-CCC---CceeeecCCC-Ccee
Q psy17342        199 EMLSSPQETRDLQYNNKQTKNLAVLSLAFP----QNDVNN-FVVGCEDGNVYSACRHG-NKA---GNVECYEGHE-GPVV  268 (401)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~-l~~~~~d~~i~~~~~~~-~~~---~~~~~~~~~~-~~v~  268 (401)
                      .  +....   +..     .......++++    | +++. +++...++.|++|+... ...   .....+..+. ..+.
T Consensus       161 ~--g~~~~---~~~-----~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  229 (314)
T 1pjx_A          161 D--GQMIQ---VDT-----AFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             T--SCEEE---EEE-----EESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             C--CCEEE---ecc-----CCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCC
Confidence            3  21111   111     22345677776    5 4544 45556788999998752 111   0122333443 5678


Q ss_pred             eeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342        269 GLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD  345 (401)
Q Consensus       269 ~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~  345 (401)
                      .+++.++      ++++++...++.|.+||..+++.+..+..+...+.+++|+|++..++++...++.|..|++...
T Consensus       230 ~i~~d~~------G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          230 GMDFDED------NNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEEEBTT------CCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             ceEECCC------CCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            8999987      7888887778999999998778777777766789999999999756666666789999998753

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.53  E-value=3.5e-12  Score=122.68  Aligned_cols=253  Identities=7%  Similarity=-0.041  Sum_probs=159.3

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC----
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG----  141 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg----  141 (401)
                      ..+..++|||||++|+.+....     ++....|++||+++++.+... .. ...+..++|+|+ ..++++. .++    
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~-----G~e~~~i~v~dl~tg~~~~~~-~~-~~~~~~~~wspD-~~l~~~~-~~~~~~~  233 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDG-----GSDWRTVKFVGVADGKPLADE-LK-WVKFSGLAWLGN-DALLYSR-FAEPKEG  233 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEET-----TCSEEEEEEEETTTCCEEEEE-EE-EEESCCCEESTT-SEEEEEE-CCCC---
T ss_pred             EEEEeEEECCCCCEEEEEEcCC-----CCceEEEEEEECCCCCCCCcc-CC-CceeccEEEECC-CEEEEEE-ecCcccc
Confidence            3688999999999999887311     111257999999987764321 11 222467899998 5555544 443    


Q ss_pred             ----------eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC-----cEEEeeccCCCCCcc
Q psy17342        142 ----------QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG-----RLCSWSLEMLSSPQE  206 (401)
Q Consensus       142 ----------~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~  206 (401)
                                .|++|++.++......  ......+...+..+.|  +++|++|+..+.++     .|.+||+...... .
T Consensus       234 ~~~~~~~~~~~v~~~~lgt~~~~~~l--v~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~  308 (741)
T 1yr2_A          234 QAFQALNYNQTVWLHRLGTPQSADQP--VFATPELPKRGHGASV--SSDGRWVVITSSEGTDPVNTVHVARVTNGKIG-P  308 (741)
T ss_dssp             -----CCCCCEEEEEETTSCGGGCEE--EECCTTCTTCEEEEEE--CTTSCEEEEEEECTTCSCCEEEEEEEETTEEC-C
T ss_pred             cccccCCCCCEEEEEECCCCchhCEE--EeccCCCCeEEEEEEE--CCCCCEEEEEEEccCCCcceEEEEECCCCCCc-c
Confidence                      3889998766532111  0111233345888888  99999888877544     7999998752101 0


Q ss_pred             ccccccccccCCccceEEEEeccCCCCeEEEEcC----CceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCC
Q psy17342        207 TRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE----DGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFS  282 (401)
Q Consensus       207 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~  282 (401)
                      ...+..     +...+... +. ++++.|+..+.    ++.|++|++..........+..+...+.++++. .      +
T Consensus       309 ~~~l~~-----~~~~~~~~-~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~------~  374 (741)
T 1yr2_A          309 VTALIP-----DLKAQWDF-VD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-G------N  374 (741)
T ss_dssp             CEEEEC-----SSSSCEEE-EE-EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-B------T
T ss_pred             cEEecC-----CCCceEEE-Ee-ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-C------C
Confidence            111111     22233333 24 57777777665    445999998642111233344455556677776 2      5


Q ss_pred             cEEEEEeCCCeEEEEEee-CCCceEEEee-cCCceEEEEECCCCCcEEEEEe---cCCEEEEEeCCCCC
Q psy17342        283 HLYLTSSYDWSVKLWNIK-ENKPVHSFNE-FRDYVMDVQWSPINPALFATVE---VAGRVDLWNLNLDT  346 (401)
Q Consensus       283 ~~l~s~~~d~~i~iwd~~-~~~~~~~~~~-~~~~v~~v~~~~~~~~~l~~~~---~d~~i~iwd~~~~~  346 (401)
                      .++++...|+..+||.+. +++....+.. +.+.+..+.++|+++.++++.+   ..++|++||+.+++
T Consensus       375 ~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          375 RLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            788888889988888776 4565666654 3567889999999875555544   34789999998754

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.53  E-value=1.7e-11  Score=104.34  Aligned_cols=234  Identities=11%  Similarity=0.019  Sum_probs=155.8

Q ss_pred             ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEE
Q psy17342         67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLW  146 (401)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw  146 (401)
                      --.+..|+|++..|+.+..         .++.|..||..+++.   ........+.+++++|++ +++++ . ++.|.+|
T Consensus        14 ~~Egp~w~~~~~~l~~~d~---------~~~~i~~~d~~~~~~---~~~~~~~~~~~i~~~~dG-~l~v~-~-~~~l~~~   78 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDI---------PAKKVCRWDSFTKQV---QRVTMDAPVSSVALRQSG-GYVAT-I-GTKFCAL   78 (297)
T ss_dssp             BEEEEEEETTTTEEEEEET---------TTTEEEEEETTTCCE---EEEECSSCEEEEEEBTTS-SEEEE-E-TTEEEEE
T ss_pred             cccCCeEECCCCEEEEEEC---------CCCEEEEEECCCCcE---EEEeCCCceEEEEECCCC-CEEEE-E-CCeEEEE
Confidence            3567889997777776663         688999999986543   233446789999999988 45544 3 5689999


Q ss_pred             ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC---------CcEEEeeccCCCCCccccccccccccC
Q psy17342        147 DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND---------GRLCSWSLEMLSSPQETRDLQYNNKQT  217 (401)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~~wd~~~~~~~~~~~~~~~~~~~~  217 (401)
                      |..+++........  .......++++++  .++|.++++....         ..-.+|.+........   +..     
T Consensus        79 d~~~g~~~~~~~~~--~~~~~~~~~di~~--d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~---~~~-----  146 (297)
T 3g4e_A           79 NWKEQSAVVLATVD--NDKKNNRFNDGKV--DPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK---YFD-----  146 (297)
T ss_dssp             ETTTTEEEEEEECC--TTCSSEEEEEEEE--CTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE---EEE-----
T ss_pred             ECCCCcEEEEEecC--CCCCCCCCCCEEE--CCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE---Eee-----
Confidence            99876543222110  0112345788888  8899876654321         2345665543221111   111     


Q ss_pred             CccceEEEEeccCCCCeE-EEEcCCceEEEEeCCCCCCCc-----eeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC
Q psy17342        218 KNLAVLSLAFPQNDVNNF-VVGCEDGNVYSACRHGNKAGN-----VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD  291 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l-~~~~~d~~i~~~~~~~~~~~~-----~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d  291 (401)
                      .......++|+ ++++.+ ++.+.++.|.+|++.......     ...+..+.+....+++.++      +++.++....
T Consensus       147 ~~~~pngi~~s-pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~------G~lwva~~~~  219 (297)
T 3g4e_A          147 QVDISNGLDWS-LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAE------GKLWVACYNG  219 (297)
T ss_dssp             EESBEEEEEEC-TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTT------SCEEEEEETT
T ss_pred             ccccccceEEc-CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCC------CCEEEEEcCC
Confidence            22346789999 777765 556678899999874222211     2223334456788999888      7888888778


Q ss_pred             CeEEEEEeeCCCceEEEeecCCceEEEEEC-CCCCcEEEEEecC
Q psy17342        292 WSVKLWNIKENKPVHSFNEFRDYVMDVQWS-PINPALFATVEVA  334 (401)
Q Consensus       292 ~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~-~~~~~~l~~~~~d  334 (401)
                      +.|..||..+++.+..+..+...+++++|. |+++.++++...+
T Consensus       220 ~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          220 GRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             TEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             CEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence            899999998899998888877789999998 8887666666543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.51  E-value=5.6e-12  Score=111.05  Aligned_cols=284  Identities=8%  Similarity=0.035  Sum_probs=173.5

Q ss_pred             CCCCCeEEEEeccCCCCCCCCC----cEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEe---------cCC
Q psy17342         75 TQHPELLLASYHRNKEAPNEPD----GVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGT---------YSG  141 (401)
Q Consensus        75 ~~~~~l~~~~~~~~~~~~~~~d----~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~---------~dg  141 (401)
                      |+++.+.++..         .+    +.|.++|..+.+.+.++..+ ..+  .++++|+++.++++..         .++
T Consensus        82 ~~~~~vyV~n~---------~~~~~~~~VsVID~~t~~vv~~I~vG-~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~  149 (426)
T 3c75_H           82 PDARRVYIQDP---------AHFAAITQQFVIDGSTGRILGMTDGG-FLP--HPVAAEDGSFFAQASTVFERIARGKRTD  149 (426)
T ss_dssp             CCTTEEEEEEC---------TTTCSSEEEEEEETTTTEEEEEEEEC-SSC--EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred             CCCCEEEEECC---------CcCCCCCeEEEEECCCCEEEEEEECC-CCC--ceEECCCCCEEEEEeccccccccCCCCC
Confidence            56666766662         22    79999999998888777665 334  8999999865555432         467


Q ss_pred             eEEEEECCCCCCCceeecc-ccccCCCCcEEEEEEeecCCceEEEEEeC--CCcEEEeeccCCCCCccccccccccccCC
Q psy17342        142 QIVLWDTRVQKKTPVHRTP-LSVMAHTHPVFCMSVIGTQNAHNLISISN--DGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      .|.++|..+.+........ ..-.........+.+  ++++++++.+..  ++.|.+.|+.+.. ....+.+..      
T Consensus       150 ~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~--spDGk~lyV~n~~~~~~VsVID~~t~k-vv~~I~v~g------  220 (426)
T 3c75_H          150 YVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNAL--TPDNKNLLFYQFSPAPAVGVVDLEGKT-FDRMLDVPD------  220 (426)
T ss_dssp             EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEE--CTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECCS------
T ss_pred             EEEEEECCCCcEEEEEECCCccccccCCCcceEEE--cCCCCEEEEEecCCCCeEEEEECCCCe-EEEEEEcCC------
Confidence            8999999887654322110 000001122346677  999999998874  5789999997632 112221111      


Q ss_pred             ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCcee----eecCCCCce-eeeecCccCCCCCCCcEEEEEeCCCe
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVE----CYEGHEGPV-VGLSSHRAQGHIDFSHLYLTSSYDWS  293 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~----~~~~~~~~v-~~i~~~~~~~~~~~~~~l~s~~~d~~  293 (401)
                         .  ....|.....+++.+.||.+.+.+....+  ...    .+.....++ ..+.+.++      +..++..+..+.
T Consensus       221 ---~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~--v~~~~~~~~~v~~~p~~~~~~~~~d------g~~~~~~s~~g~  287 (426)
T 3c75_H          221 ---C--YHIFPASPTVFYMNCRDGSLARVDFADGE--TKVTNTEVFHTEDELLINHPAFSLR------SGRLVWPTYTGK  287 (426)
T ss_dssp             ---E--EEEEEEETTEEEEEETTSSEEEEECCTTC--CEEEECCCCSCTTSCBCSCCEECTT------TCEEEEEBTTSE
T ss_pred             ---c--eeeccCCCcEEEEEcCCCCEEEEECCCCc--EEEEeeeeeccCCCceeeEeeecCC------CCEEEEEeCCCc
Confidence               1  12222223555666677777777663222  221    111112221 12345666      455555566889


Q ss_pred             EEEEEeeCCCce--EEEee----------cCCceEEEEECCCCCcEEEEEec---------CCEEEEEeCCCCCCCcceE
Q psy17342        294 VKLWNIKENKPV--HSFNE----------FRDYVMDVQWSPINPALFATVEV---------AGRVDLWNLNLDTEVPATS  352 (401)
Q Consensus       294 i~iwd~~~~~~~--~~~~~----------~~~~v~~v~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~  352 (401)
                      +.+.|.......  ..+..          .......++++|+++.++++...         ++.|.+.|..+.+.+..+.
T Consensus       288 V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~  367 (426)
T 3c75_H          288 IFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE  367 (426)
T ss_dssp             EEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred             EEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE
Confidence            999998654321  11110          01112236899998866665431         3589999999988776664


Q ss_pred             EeecCCCCeEEEEecCCCc-EEEEEe-cCCcEEEEEeccCccceeeee
Q psy17342        353 AIVEGAPALSRVTWTPNGT-QLCVGD-EKGAITMFDVGEVGIACLKFI  398 (401)
Q Consensus       353 ~~~~~~~~v~~~~~s~~g~-~l~~~~-~dg~v~iw~~~~~~~~~l~~~  398 (401)
                      .  +  .....+.|+|||+ ++++.. .++.|.++|+.+.  +.++++
T Consensus       368 v--g--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~--kvv~tI  409 (426)
T 3c75_H          368 L--G--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG--EELRSV  409 (426)
T ss_dssp             E--E--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTC--CEEEEE
T ss_pred             C--C--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC--CEEEEe
Confidence            3  2  2477899999999 888887 5899999999998  455554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.50  E-value=3.3e-11  Score=105.56  Aligned_cols=257  Identities=9%  Similarity=-0.046  Sum_probs=153.4

Q ss_pred             EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-c-----CCCeeEEEEeCCCCceEEEEe-c-CC
Q psy17342         70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-C-----QSPVLSCCFAKFNPYLILGGT-Y-SG  141 (401)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~-----~~~v~~~~~~~~~~~~l~~g~-~-dg  141 (401)
                      .++++|||+.+.++.........+..++.|.+||..+.+.+...... .     ......++|+|+++ +|+.+. . ++
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~-~l~v~n~~~~~  148 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFAAGP  148 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC-EEEEEecCCCC
Confidence            89999999999888621111111123678999999877665544432 0     12356899999985 555444 3 57


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccc
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA  221 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  221 (401)
                      .|.++| .+++..... .     ....   ++.+. ......+++.+.||.+.+++. ... .......... . ....+
T Consensus       149 ~v~viD-~t~~~~~~~-i-----~~~~---~~~~~-~~~~~~~~~~~~dg~~~~vd~-~g~-~~~~~~~~~~-~-~~~~p  213 (373)
T 2mad_H          149 AVGLVV-QGGSSDDQL-L-----SSPT---CYHIH-PGAPSTFYLLCAQGGLAKTDH-AGG-AAGAGLVGAM-L-TAAQN  213 (373)
T ss_pred             eEEEEE-CCCCEEeEE-c-----CCCc---eEEEE-eCCCceEEEEcCCCCEEEEEC-CCc-EEEEEecccc-c-cCCcc
Confidence            899999 877543110 1     1111   12231 223345677788999999998 432 2211110000 0 01111


Q ss_pred             -eEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCC----------CCceeeeecCccCCCCCCCcEEEEEeC
Q psy17342        222 -VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGH----------EGPVVGLSSHRAQGHIDFSHLYLTSSY  290 (401)
Q Consensus       222 -v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~----------~~~v~~i~~~~~~~~~~~~~~l~s~~~  290 (401)
                       .....+. +++..++..+..+.+.+.|........+..+.-.          ......+.++|+      ++.+..+..
T Consensus       214 ~~~~~~~~-~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d------~~~lyV~~~  286 (373)
T 2mad_H          214 LLTQPAQA-NKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKS------SDGIYLLTS  286 (373)
T ss_pred             eeecceeE-ecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCC------CCEEEEEec
Confidence             1234455 4444544445778999999865432222222211          122334677777      444444332


Q ss_pred             ----------CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEe-cCCEEEEEeCCCCCCCcc
Q psy17342        291 ----------DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVE-VAGRVDLWNLNLDTEVPA  350 (401)
Q Consensus       291 ----------d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~  350 (401)
                                .+.|.++|..+++.+.++.. .....+++|+|+|+.+++++. .++.|.++|+.+++.+..
T Consensus       287 ~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          287 EQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             cCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence                      35799999999999998875 446889999999984566665 589999999998876544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.49  E-value=3.6e-11  Score=102.33  Aligned_cols=227  Identities=13%  Similarity=0.124  Sum_probs=148.7

Q ss_pred             CeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeecc
Q psy17342        120 PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLE  199 (401)
Q Consensus       120 ~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~  199 (401)
                      -..+..|+|++..++++...++.|..||..++... .       ......+.++++  .+++.++++ . ++.|.+||..
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~-------~~~~~~~~~i~~--~~dG~l~v~-~-~~~l~~~d~~   81 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-R-------VTMDAPVSSVAL--RQSGGYVAT-I-GTKFCALNWK   81 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-E-------EECSSCEEEEEE--BTTSSEEEE-E-TTEEEEEETT
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-E-------EeCCCceEEEEE--CCCCCEEEE-E-CCeEEEEECC
Confidence            44678999977678888888899999999876532 1       123467889998  889985554 4 5678999986


Q ss_pred             CCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc-----------CCceEEEEeCCCCCCCceeeecCCCCcee
Q psy17342        200 MLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-----------EDGNVYSACRHGNKAGNVECYEGHEGPVV  268 (401)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------~d~~i~~~~~~~~~~~~~~~~~~~~~~v~  268 (401)
                      +.. ........   .......+..++++ ++++++++..           ..+.|+.++....    ...+..+....+
T Consensus        82 ~g~-~~~~~~~~---~~~~~~~~~di~~d-~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~----~~~~~~~~~~pn  152 (297)
T 3g4e_A           82 EQS-AVVLATVD---NDKKNNRFNDGKVD-PAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH----VKKYFDQVDISN  152 (297)
T ss_dssp             TTE-EEEEEECC---TTCSSEEEEEEEEC-TTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC----EEEEEEEESBEE
T ss_pred             CCc-EEEEEecC---CCCCCCCCCCEEEC-CCCCEEEecCCcccccccccCCCcEEEEEECCCC----EEEEeecccccc
Confidence            421 11111110   01123457889999 7888665442           2345666654321    222233334567


Q ss_pred             eeecCccCCCCCCCc-EEEEEeCCCeEEEEEee--CCCce-----EEEeecCCceEEEEECCCCCcEEEEEecCCEEEEE
Q psy17342        269 GLSSHRAQGHIDFSH-LYLTSSYDWSVKLWNIK--ENKPV-----HSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLW  340 (401)
Q Consensus       269 ~i~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~--~~~~~-----~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iw  340 (401)
                      .++|+|+      ++ ++++.+.++.|.+||+.  +++..     ..+..+......++++++|. +.++...++.|..|
T Consensus       153 gi~~spd------g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~  225 (297)
T 3g4e_A          153 GLDWSLD------HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRL  225 (297)
T ss_dssp             EEEECTT------SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEE
T ss_pred             ceEEcCC------CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEE
Confidence            8999998      55 44566668899999983  44421     22223345688999999996 77777778899999


Q ss_pred             eCCCCCCCcceEEeecCCCCeEEEEec-CCCcEEEEEe
Q psy17342        341 NLNLDTEVPATSAIVEGAPALSRVTWT-PNGTQLCVGD  377 (401)
Q Consensus       341 d~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~  377 (401)
                      |..+++.+..+.   .+...+++++|. |+++.|++.+
T Consensus       226 d~~tG~~~~~i~---~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          226 DPVTGKRLQTVK---LPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             CTTTCCEEEEEE---CSSSBEEEEEEESGGGCEEEEEE
T ss_pred             cCCCceEEEEEE---CCCCCceEEEEeCCCCCEEEEEc
Confidence            998777655443   234578999998 8887776554

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.47  E-value=2.2e-12  Score=112.09  Aligned_cols=176  Identities=16%  Similarity=0.162  Sum_probs=127.6

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCC---------CCceEEEecCCCeeEEEEeCCCCceEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKK---------TTPEFEFFCQSPVLSCCFAKFNPYLILG  136 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~~  136 (401)
                      ..+..+++++....+++|+          .+ .+.+|+++...         ..+........ |+.++|  ++ .+|++
T Consensus        38 ~~~nlLais~~~gll~a~~----------~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~-~~L~v  102 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAAS----------GS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HG-DQVLV  102 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEE----------TT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ET-TEEEE
T ss_pred             ccccEEEEcCCCCEEEEeC----------CC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CC-CEEEE
Confidence            4699999999999999998          44 66679876432         23334455666 999999  56 67888


Q ss_pred             EecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccccccc
Q psy17342        137 GTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQ  216 (401)
Q Consensus       137 g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  216 (401)
                      + .++.|++||+.+.....      ....|..++.++.+  .+.  .+++++.||.|.+||+..... .   .       
T Consensus       103 ~-~~~~l~v~dv~sl~~~~------~~~~~~~~v~~i~~--~~p--~~av~~~dG~L~v~dl~~~~~-~---~-------  160 (388)
T 1xip_A          103 S-TRNALYSLDLEELSEFR------TVTSFEKPVFQLKN--VNN--TLVILNSVNDLSALDLRTKST-K---Q-------  160 (388)
T ss_dssp             E-ESSEEEEEESSSTTCEE------EEEECSSCEEEEEE--CSS--EEEEEETTSEEEEEETTTCCE-E---E-------
T ss_pred             E-cCCcEEEEEchhhhccC------ccceeecceeeEEe--cCC--CEEEEECCCCEEEEEccCCcc-c---c-------
Confidence            7 88999999998765321      12456677888877  333  288899999999999975221 1   1       


Q ss_pred             CCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeee------c---CCCCceeeeecCccCCCCCCCcEEEE
Q psy17342        217 TKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY------E---GHEGPVVGLSSHRAQGHIDFSHLYLT  287 (401)
Q Consensus       217 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~------~---~~~~~v~~i~~~~~~~~~~~~~~l~s  287 (401)
                       ....|+|++|+ +++  +++|..||.+++|+...........+      .   +|...|.+|.|.++      ..++++
T Consensus       161 -~~~~Vs~v~WS-pkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~------~~flv~  230 (388)
T 1xip_A          161 -LAQNVTSFDVT-NSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSP------QDFLAV  230 (388)
T ss_dssp             -EEESEEEEEEC-SSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSS------SEEEEE
T ss_pred             -ccCCceEEEEc-CCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecC------CeEEEE
Confidence             33589999999 677  78899999999998764431102233      2   47889999999997      577776


Q ss_pred             E
Q psy17342        288 S  288 (401)
Q Consensus       288 ~  288 (401)
                      -
T Consensus       231 y  231 (388)
T 1xip_A          231 F  231 (388)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.46  E-value=9.4e-13  Score=114.38  Aligned_cols=179  Identities=11%  Similarity=0.086  Sum_probs=128.7

Q ss_pred             cEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCC-----CccccccccccccCCccceEEEEeccCCCCeEEEEcCCce
Q psy17342        169 PVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSS-----PQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGN  243 (401)
Q Consensus       169 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  243 (401)
                      +++.+++  ++...++++|+.++ +.+|++.....     ... .+...  ...... |+.++|   +++.|+++ .++.
T Consensus        39 ~~nlLai--s~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~-~~~~~--~~~lp~-V~~l~f---d~~~L~v~-~~~~  107 (388)
T 1xip_A           39 SLQNLDI--SNSKSLFVAASGSK-AVVGELQLLRDHITSDSTP-LTFKW--EKEIPD-VIFVCF---HGDQVLVS-TRNA  107 (388)
T ss_dssp             CCBCEEE--ETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCC-CCCSE--EEECTT-EEEEEE---ETTEEEEE-ESSE
T ss_pred             cccEEEE--cCCCCEEEEeCCCE-EEEEEhhHhhhhhcccccc-ccceE--EeeCCC-eeEEEE---CCCEEEEE-cCCc
Confidence            6788888  88899999999884 56698764320     000 11100  112445 999999   78899988 8899


Q ss_pred             EEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCC
Q psy17342        244 VYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPI  323 (401)
Q Consensus       244 i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~  323 (401)
                      |++||.....  .......|..++.++.+.+.       + ++++..||.|.+||+.++....    +...|.+++|||+
T Consensus       108 l~v~dv~sl~--~~~~~~~~~~~v~~i~~~~p-------~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpk  173 (388)
T 1xip_A          108 LYSLDLEELS--EFRTVTSFEKPVFQLKNVNN-------T-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNS  173 (388)
T ss_dssp             EEEEESSSTT--CEEEEEECSSCEEEEEECSS-------E-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSS
T ss_pred             EEEEEchhhh--ccCccceeecceeeEEecCC-------C-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCC
Confidence            9999987543  34455667788888776653       3 8888999999999998776543    3458999999999


Q ss_pred             CCcEEEEEecCCEEEEEeCCCCCC--CcceEE------eecCCCCeEEEEecCCCcEEEE
Q psy17342        324 NPALFATVEVAGRVDLWNLNLDTE--VPATSA------IVEGAPALSRVTWTPNGTQLCV  375 (401)
Q Consensus       324 ~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~------~~~~~~~v~~~~~s~~g~~l~~  375 (401)
                      |   ++.|..||.+++|+......  ...+..      ..+|...|.++.|.+++.++++
T Consensus       174 G---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          174 Q---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             E---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             c---eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            8   46688899999998876542  111110      0135678999999999999886

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.46  E-value=8.3e-11  Score=104.47  Aligned_cols=245  Identities=12%  Similarity=-0.008  Sum_probs=159.1

Q ss_pred             CCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC--cEEEe
Q psy17342        119 SPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG--RLCSW  196 (401)
Q Consensus       119 ~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~~w  196 (401)
                      .....|+|++++ +++++...++.|++||..++.......      . ..... ++|  ++++..|+++..++  .|.++
T Consensus       131 ~~P~~la~d~~g-~lyv~d~~~~~I~~id~~~g~~~~~~~------~-~~~~~-ia~--~~~g~~l~~~d~~~~~~I~~~  199 (409)
T 3hrp_A          131 KYMWGIAAVGNN-TVLAYQRDDPRVRLISVDDNKVTTVHP------G-FKGGK-PAV--TKDKQRVYSIGWEGTHTVYVY  199 (409)
T ss_dssp             CCEEEEEECSTT-EEEEEETTTTEEEEEETTTTEEEEEEE------T-CCBCB-CEE--CTTSSEEEEEBSSTTCEEEEE
T ss_pred             CCceEEEEeCCC-CEEEEecCCCcEEEEECCCCEEEEeec------c-CCCCc-eeE--ecCCCcEEEEecCCCceEEEE
Confidence            367899999977 677777777899999998765432211      1 22223 788  89999888888866  68888


Q ss_pred             eccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceee--ecCCCCce--eeeec
Q psy17342        197 SLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVEC--YEGHEGPV--VGLSS  272 (401)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~--~~~~~~~v--~~i~~  272 (401)
                      +..........-.+    .......+.+++++ ++...|+++..++.|+.|+...........  ..++...-  ..+++
T Consensus       200 d~~~~~~~~~~g~~----~~~~~~~p~~iav~-p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~  274 (409)
T 3hrp_A          200 MKASGWAPTRIGQL----GSTFSGKIGAVALD-ETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIY  274 (409)
T ss_dssp             EGGGTTCEEEEEEC----CTTSCSCCCBCEEC-TTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEE
T ss_pred             EcCCCceeEEeeec----cchhcCCcEEEEEe-CCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEE
Confidence            77542211111000    01133456788999 544455557778899999987543211100  11222222  38999


Q ss_pred             CccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC---------------CceEEEEECCCCCcEEEEEe-cCCE
Q psy17342        273 HRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR---------------DYVMDVQWSPINPALFATVE-VAGR  336 (401)
Q Consensus       273 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------------~~v~~v~~~~~~~~~l~~~~-~d~~  336 (401)
                      +|..     +.++++-..++.|+.|+... + +..+.++.               .....++++|+|. ++++-. .++.
T Consensus       275 ~p~~-----g~lyv~d~~~~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~  346 (409)
T 3hrp_A          275 YFVD-----SNFYMSDQNLSSVYKITPDG-E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYC  346 (409)
T ss_dssp             ETTT-----TEEEEEETTTTEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCE
T ss_pred             eCCC-----CEEEEEeCCCCEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCE
Confidence            9953     57777777789999998753 3 34444432               3478999999997 778877 7899


Q ss_pred             EEEEeCCCCCCCcceEEee---c---------CCCCeEEEEecCCCcEEEEEecCCcEEEEEec
Q psy17342        337 VDLWNLNLDTEVPATSAIV---E---------GAPALSRVTWTPNGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       337 i~iwd~~~~~~~~~~~~~~---~---------~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~  388 (401)
                      |+.|++.++.. ..+....   +         .-.....++++++|.++++-..++.|+.++++
T Consensus       347 I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          347 LRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             EEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             EEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            99999766542 2211100   0         01357899999999888888888889888763

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.44  E-value=3.7e-10  Score=96.01  Aligned_cols=238  Identities=7%  Similarity=-0.030  Sum_probs=162.1

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS  197 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd  197 (401)
                      ...+.++++.+++ .+.++...++.|.+|+.. ++...     .....+...+.++++  .+++..+++...++.|..+|
T Consensus        19 ~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~-~~~~~-----~~~~~~~~~~~~i~~--~~~g~l~v~~~~~~~v~~~d   89 (300)
T 2qc5_A           19 DSGPYGITSSEDG-KVWFTQHKANKISSLDQS-GRIKE-----FEVPTPDAKVMCLIV--SSLGDIWFTENGANKIGKLS   89 (300)
T ss_dssp             TCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEE-----EECSSTTCCEEEEEE--CTTSCEEEEETTTTEEEEEC
T ss_pred             CCCcceeeECCCC-CEEEEcCCCCeEEEECCC-CceEE-----EECCCCCCcceeEEE--CCCCCEEEEecCCCeEEEEC
Confidence            3578899999977 566666567899999987 43221     111234467889988  78888777777788899998


Q ss_pred             ccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCC
Q psy17342        198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQG  277 (401)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  277 (401)
                      ..  +.. ......     .....+..+++. +++.++++...++.|..++.. ... ....+......+.++++.++  
T Consensus        90 ~~--g~~-~~~~~~-----~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~d~~--  156 (300)
T 2qc5_A           90 KK--GGF-TEYPLP-----QPDSGPYGITEG-LNGDIWFTQLNGDRIGKLTAD-GTI-YEYDLPNKGSYPAFITLGSD--  156 (300)
T ss_dssp             TT--SCE-EEEECS-----STTCCEEEEEEC-STTCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTT--
T ss_pred             CC--CCe-EEecCC-----CCCCCCccceEC-CCCCEEEEccCCCeEEEECCC-CCE-EEccCCCCCCCceeEEECCC--
Confidence            76  221 111111     123568899999 688877777778899999876 221 11122334456789999987  


Q ss_pred             CCCCCcEEEEEeCCCeEEEEEeeCCCceEEEe--ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee
Q psy17342        278 HIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN--EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV  355 (401)
Q Consensus       278 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  355 (401)
                          ++++++...++.|..+|. +++... +.  .+...+.++++++++. ++++....+.|.+||. ++... .... .
T Consensus       157 ----g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~-~~~~-~  226 (300)
T 2qc5_A          157 ----NALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRITT-TGEIS-EYDI-P  226 (300)
T ss_dssp             ----SSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEE-EEEC-S
T ss_pred             ----CCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCC-EEEEccCCCEEEEEcC-CCcEE-EEEC-C
Confidence                677776666789999998 555433 32  2345688999999986 6776666778999998 33321 1211 1


Q ss_pred             cCCCCeEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342        356 EGAPALSRVTWTPNGTQLCVGDEKGAITMFDV  387 (401)
Q Consensus       356 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~  387 (401)
                      .+...+.+++++++|++.++...++.|..|+.
T Consensus       227 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          227 TPNARPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             STTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             CCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence            23456889999999997776666788999997

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.44  E-value=2.8e-11  Score=115.37  Aligned_cols=251  Identities=15%  Similarity=0.131  Sum_probs=157.4

Q ss_pred             CCeeEEEEeCCCCceEEEEecC----CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCc--
Q psy17342        119 SPVLSCCFAKFNPYLILGGTYS----GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR--  192 (401)
Q Consensus       119 ~~v~~~~~~~~~~~~l~~g~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~--  192 (401)
                      ..+..++|||++..++++.+..    ..|++||+.+++....     .+..  .....++|  + +++.|+.++.+..  
T Consensus       129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-----~~~~--~k~~~~~W--s-Dg~~l~y~~~~~~~~  198 (693)
T 3iuj_A          129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-----PLKD--VKFSGISW--L-GNEGFFYSSYDKPDG  198 (693)
T ss_dssp             CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-----EEEE--EESCCCEE--E-TTTEEEEEESSCCC-
T ss_pred             EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-----ccCC--ceeccEEE--e-CCCEEEEEEecCccc
Confidence            3578889999985555444333    4699999998874321     0111  11245678  8 9988888887743  


Q ss_pred             -----------EEEeeccCCCCCccccccccccccC-CccceEEEEeccCCCCeEEEEcC----CceEEEEeCCCCCCCc
Q psy17342        193 -----------LCSWSLEMLSSPQETRDLQYNNKQT-KNLAVLSLAFPQNDVNNFVVGCE----DGNVYSACRHGNKAGN  256 (401)
Q Consensus       193 -----------i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~----d~~i~~~~~~~~~~~~  256 (401)
                                 |.+|++.+....  ...+..  ... +......+.++ +++++|+....    ...|+++++..... .
T Consensus       199 ~~~~~~~~~~~v~~~~lgt~~~~--~~~v~~--~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~~~~-~  272 (693)
T 3iuj_A          199 SELSARTDQHKVYFHRLGTAQED--DRLVFG--AIPAQHHRYVGATVT-EDDRFLLISAANSTSGNRLYVKDLSQENA-P  272 (693)
T ss_dssp             ------CCCCEEEEEETTSCGGG--CEEEES--CSGGGCCSEEEEEEC-TTSCEEEEEEESSSSCCEEEEEETTSTTC-C
T ss_pred             ccccccCCCcEEEEEECCCCccc--ceEEEe--cCCCCCeEEEEEEEc-CCCCEEEEEEccCCCCcEEEEEECCCCCC-c
Confidence                       888988652211  111111  111 23346788999 78888765432    35899999875432 2


Q ss_pred             eeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC---CeEEEEEeeCCCc--eEEEeecCCceEEEEECCCCCcEEEEE
Q psy17342        257 VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD---WSVKLWNIKENKP--VHSFNEFRDYVMDVQWSPINPALFATV  331 (401)
Q Consensus       257 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~--~~~~~~~~~~v~~v~~~~~~~~~l~~~  331 (401)
                      ...+..+....... +.+..     +.+++....+   +.|..+|+.++..  ...+..|...+.  .|+++++.++++.
T Consensus       273 ~~~l~~~~~~~~~~-~~~~g-----~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~  344 (693)
T 3iuj_A          273 LLTVQGDLDADVSL-VDNKG-----STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEY  344 (693)
T ss_dssp             CEEEECSSSSCEEE-EEEET-----TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEE
T ss_pred             eEEEeCCCCceEEE-EeccC-----CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEE
Confidence            34455555555444 55552     4555555543   5799999987654  355666666665  8899998666666


Q ss_pred             ecCC--EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC----CcEEEEEeccCccceee
Q psy17342        332 EVAG--RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK----GAITMFDVGEVGIACLK  396 (401)
Q Consensus       332 ~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----g~v~iw~~~~~~~~~l~  396 (401)
                      ..++  .|++||+..+. ...  ........+..+.++++++.|+....+    +.|+.||+.+++.+.++
T Consensus       345 ~~~g~~~l~~~d~~g~~-~~~--l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~  412 (693)
T 3iuj_A          345 MVDATARVEQFDYEGKR-VRE--VALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR  412 (693)
T ss_dssp             EETTEEEEEEECTTSCE-EEE--ECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred             EECCeeEEEEEECCCCe-eEE--eecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence            6665  68888887432 222  223344567788888898877666554    78999999887655444

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.43  E-value=6e-11  Score=105.39  Aligned_cols=243  Identities=9%  Similarity=0.059  Sum_probs=155.4

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC--eE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG--QI  143 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg--~v  143 (401)
                      .....|+|+|+++ |.++..         .++.|++||.+++.... + ........ ++|+|++ ..|+++..++  .|
T Consensus       131 ~~P~~la~d~~g~-lyv~d~---------~~~~I~~id~~~g~~~~-~-~~~~~~~~-ia~~~~g-~~l~~~d~~~~~~I  196 (409)
T 3hrp_A          131 KYMWGIAAVGNNT-VLAYQR---------DDPRVRLISVDDNKVTT-V-HPGFKGGK-PAVTKDK-QRVYSIGWEGTHTV  196 (409)
T ss_dssp             CCEEEEEECSTTE-EEEEET---------TTTEEEEEETTTTEEEE-E-EETCCBCB-CEECTTS-SEEEEEBSSTTCEE
T ss_pred             CCceEEEEeCCCC-EEEEec---------CCCcEEEEECCCCEEEE-e-eccCCCCc-eeEecCC-CcEEEEecCCCceE
Confidence            4588999999997 444541         57899999998654432 2 22223334 9999987 5666665555  78


Q ss_pred             EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc-ce
Q psy17342        144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL-AV  222 (401)
Q Consensus       144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~v  222 (401)
                      .+++............ . .......+.++++  ++++..|+.+..++.|..||.....  ........  ..+... ..
T Consensus       197 ~~~d~~~~~~~~~~g~-~-~~~~~~~p~~iav--~p~~g~lyv~d~~~~I~~~d~~~~~--~~~~~~~~--~~g~~~~~P  268 (409)
T 3hrp_A          197 YVYMKASGWAPTRIGQ-L-GSTFSGKIGAVAL--DETEEWLYFVDSNKNFGRFNVKTQE--VTLIKQLE--LSGSLGTNP  268 (409)
T ss_dssp             EEEEGGGTTCEEEEEE-C-CTTSCSCCCBCEE--CTTSSEEEEECTTCEEEEEETTTCC--EEEEEECC--CCSCCCCSS
T ss_pred             EEEEcCCCceeEEeee-c-cchhcCCcEEEEE--eCCCCeEEEEECCCcEEEEECCCCC--EEEEeccc--ccCCCCCCc
Confidence            8888766543111100 0 0113456678888  7844455557778899999987422  11110000  011111 11


Q ss_pred             E-EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCC---------------CceeeeecCccCCCCCCCcEEE
Q psy17342        223 L-SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHE---------------GPVVGLSSHRAQGHIDFSHLYL  286 (401)
Q Consensus       223 ~-~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~---------------~~v~~i~~~~~~~~~~~~~~l~  286 (401)
                      . .++|+|.++.++++-..++.|+.|+....    ...+.++.               .....++++|+      +++++
T Consensus       269 ~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d------G~lyv  338 (409)
T 3hrp_A          269 GPYLIYYFVDSNFYMSDQNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED------GNFYI  338 (409)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT------CCEEE
T ss_pred             cccEEEeCCCCEEEEEeCCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC------CCEEE
Confidence            3 89999435677777778899999987643    22332221               34678999998      67888


Q ss_pred             EEe-CCCeEEEEEeeCCCceEEEeec---------------CCceEEEEECCCCCcEEEEEecCCEEEEEeC
Q psy17342        287 TSS-YDWSVKLWNIKENKPVHSFNEF---------------RDYVMDVQWSPINPALFATVEVAGRVDLWNL  342 (401)
Q Consensus       287 s~~-~d~~i~iwd~~~~~~~~~~~~~---------------~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~  342 (401)
                      +-. .++.|+.||+.+++ +.++.++               -.....++++|++. ++++-..++.|+.+++
T Consensus       339 ad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~-lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          339 VDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG-YWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE-EEEEESTTCEEEEEEE
T ss_pred             EeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC-EEEEECCCCeEEEEEe
Confidence            877 78999999976665 4445443               23578999999975 7888888888988765

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.41  E-value=2.8e-10  Score=98.09  Aligned_cols=225  Identities=9%  Similarity=-0.010  Sum_probs=143.2

Q ss_pred             eeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccC
Q psy17342        121 VLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEM  200 (401)
Q Consensus       121 v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~  200 (401)
                      .....|+|++..+++++..++.|..||..++....        ......+.++++  .+++.++++. .+ .|.+||...
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------~~~~~~v~~i~~--~~dg~l~v~~-~~-gl~~~d~~~  118 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------HALPFMGSALAK--ISDSKQLIAS-DD-GLFLRDTAT  118 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------EECSSCEEEEEE--EETTEEEEEE-TT-EEEEEETTT
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------EECCCcceEEEE--eCCCeEEEEE-CC-CEEEEECCC
Confidence            45788999876788888888999999998764321        112457899998  7888877764 44 488898764


Q ss_pred             CCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC------CceEEEEeCCCCCCCceeeecCCCCceeeeecCc
Q psy17342        201 LSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE------DGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHR  274 (401)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  274 (401)
                      .. ........   .......+..++++ ++++++++...      .+.|+.++ . .+   ...+..+......++|+|
T Consensus       119 g~-~~~~~~~~---~~~~~~~~~~i~~d-~~G~l~v~~~~~~~~~~~~~l~~~~-~-g~---~~~~~~~~~~~~~i~~s~  188 (326)
T 2ghs_A          119 GV-LTLHAELE---SDLPGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHVA-K-GK---VTKLFADISIPNSICFSP  188 (326)
T ss_dssp             CC-EEEEECSS---TTCTTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEEE-T-TE---EEEEEEEESSEEEEEECT
T ss_pred             Cc-EEEEeeCC---CCCCCCCCCCEEEC-CCCCEEEEeCCCcCCCCceEEEEEe-C-Cc---EEEeeCCCcccCCeEEcC
Confidence            22 11111110   00123468899999 78876654432      35677776 3 21   222322334567899999


Q ss_pred             cCCCCCCCcEE-EEEeCCCeEEEEEee--CC-Cce--EEE---eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342        275 AQGHIDFSHLY-LTSSYDWSVKLWNIK--EN-KPV--HSF---NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD  345 (401)
Q Consensus       275 ~~~~~~~~~~l-~s~~~d~~i~iwd~~--~~-~~~--~~~---~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~  345 (401)
                      +      ++.+ ++.+.++.|.+||+.  ++ +..  ..+   ......+..+++.++|. ++++...++.|.+||. ++
T Consensus       189 d------g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~-~g  260 (326)
T 2ghs_A          189 D------GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDT-DG  260 (326)
T ss_dssp             T------SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECT-TC
T ss_pred             C------CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECC-CC
Confidence            8      5554 455557899999986  55 321  222   22345678899999996 6666656789999998 44


Q ss_pred             CCCcceEEeecCCCCeEEEEec-CCCcEEEEEec
Q psy17342        346 TEVPATSAIVEGAPALSRVTWT-PNGTQLCVGDE  378 (401)
Q Consensus       346 ~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~  378 (401)
                      +....+.   .+...+++++|+ ++++.|++++.
T Consensus       261 ~~~~~i~---~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          261 NHIARYE---VPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             CEEEEEE---CSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             CEEEEEE---CCCCCcEEEEEecCCCCEEEEEec
Confidence            4333332   234568999998 88877755544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.38  E-value=1.3e-10  Score=110.80  Aligned_cols=252  Identities=12%  Similarity=0.067  Sum_probs=152.2

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC---
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS---  140 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d---  140 (401)
                      +...+..++|||||++||.+..     ..++....|++||+++++.+... +. ......++|+ |+..++++ +.+   
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~-----~~G~~~~~i~v~dl~tg~~~~~~-~~-~~k~~~~~Ws-Dg~~l~y~-~~~~~~  197 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLS-----LAGSDWREIHLMDVESKQPLETP-LK-DVKFSGISWL-GNEGFFYS-SYDKPD  197 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEE-----CSSCCEEEEEEEETTTCSEEEEE-EE-EEESCCCEEE-TTTEEEEE-ESSCCC
T ss_pred             CcEEEEEEEECCCCCEEEEEEe-----cCCCceEEEEEEECCCCCCCccc-cC-CceeccEEEe-CCCEEEEE-EecCcc
Confidence            4457889999999999887662     11223468999999988754332 11 1113578899 88555544 444   


Q ss_pred             ----------CeEEEEECCCCCCCceeeccccccC-CCCcEEEEEEeecCCceEEEEEeC----CCcEEEeeccCCCCCc
Q psy17342        141 ----------GQIVLWDTRVQKKTPVHRTPLSVMA-HTHPVFCMSVIGTQNAHNLISISN----DGRLCSWSLEMLSSPQ  205 (401)
Q Consensus       141 ----------g~v~iw~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~~wd~~~~~~~~  205 (401)
                                ..|++|++.+.......-  ..... |...+..+.|  ++++++|+....    +..|.++|+.......
T Consensus       198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v--~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~  273 (693)
T 3iuj_A          198 GSELSARTDQHKVYFHRLGTAQEDDRLV--FGAIPAQHHRYVGATV--TEDDRFLLISAANSTSGNRLYVKDLSQENAPL  273 (693)
T ss_dssp             -------CCCCEEEEEETTSCGGGCEEE--ESCSGGGCCSEEEEEE--CTTSCEEEEEEESSSSCCEEEEEETTSTTCCC
T ss_pred             cccccccCCCcEEEEEECCCCcccceEE--EecCCCCCeEEEEEEE--cCCCCEEEEEEccCCCCcEEEEEECCCCCCce
Confidence                      349999988765321110  11123 4455778888  999998765432    2478899987532111


Q ss_pred             cccccccccccCCccceEEEEeccCCCCeE-EEEcCC---ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCC
Q psy17342        206 ETRDLQYNNKQTKNLAVLSLAFPQNDVNNF-VVGCED---GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDF  281 (401)
Q Consensus       206 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d---~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~  281 (401)
                      .  .+..     +....... ++ +++..| +....+   +.|..+++..........+..|...+.  .|+|+      
T Consensus       274 ~--~l~~-----~~~~~~~~-~~-~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~------  336 (693)
T 3iuj_A          274 L--TVQG-----DLDADVSL-VD-NKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSG------  336 (693)
T ss_dssp             E--EEEC-----SSSSCEEE-EE-EETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEE------
T ss_pred             E--EEeC-----CCCceEEE-Ee-ccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEE------
Confidence            1  1111     22333333 45 344444 444433   678999987543222345556666554  78887      


Q ss_pred             CcEEEEEeC-CC--eEEEEEeeCCCceEEEee-cCCceEEEEECCCCCcEEEEEecC---CEEEEEeCCCCC
Q psy17342        282 SHLYLTSSY-DW--SVKLWNIKENKPVHSFNE-FRDYVMDVQWSPINPALFATVEVA---GRVDLWNLNLDT  346 (401)
Q Consensus       282 ~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~l~~~~~d---~~i~iwd~~~~~  346 (401)
                      ++.|+.... ++  .|++||+.. .....+.. ..+.+..+.++|+++.++++.+..   +.|..||+.+++
T Consensus       337 g~~lv~~~~~~g~~~l~~~d~~g-~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          337 SGYLFAEYMVDATARVEQFDYEG-KRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTS-CEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             CCEEEEEEEECCeeEEEEEECCC-CeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            555555544 54  688898864 44444443 345677888898887655554422   789999998764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.38  E-value=4.1e-11  Score=105.60  Aligned_cols=258  Identities=12%  Similarity=0.051  Sum_probs=156.8

Q ss_pred             EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe------cCCCeeEEEEeCCCCceEEEEec--CC
Q psy17342         70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF------CQSPVLSCCFAKFNPYLILGGTY--SG  141 (401)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~g~~--dg  141 (401)
                      .++++||++.|.++.+...+...+..++.|.++|..+.+.+.++...      .......++|+|+++ +++.+..  ++
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk-~lyV~n~~~~~  200 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNK-NLLFYQFSPAP  200 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSS-EEEEEECSSSC
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCC-EEEEEecCCCC
Confidence            89999999999888732111111113678999999988877666553      113456889999985 4554443  57


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      .|.+.|..+.+......    ..+    .  ...  .|+ ...+++.+.||++.+.+... .+...... ..  ......
T Consensus       201 ~VsVID~~t~kvv~~I~----v~g----~--~~~--~p~g~~~~v~~~~dG~~~~V~~~~-~~v~~~~~-~~--~~v~~~  264 (426)
T 3c75_H          201 AVGVVDLEGKTFDRMLD----VPD----C--YHI--FPASPTVFYMNCRDGSLARVDFAD-GETKVTNT-EV--FHTEDE  264 (426)
T ss_dssp             EEEEEETTTTEEEEEEE----CCS----E--EEE--EEEETTEEEEEETTSSEEEEECCT-TCCEEEEC-CC--CSCTTS
T ss_pred             eEEEEECCCCeEEEEEE----cCC----c--eee--ccCCCcEEEEEcCCCCEEEEECCC-CcEEEEee-ee--eccCCC
Confidence            89999999877543221    111    1  111  122 24566777888888888732 22211000 00  000111


Q ss_pred             ce-EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC----------CCCceeeeecCccCCCCCCCcEEEEEe
Q psy17342        221 AV-LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG----------HEGPVVGLSSHRAQGHIDFSHLYLTSS  289 (401)
Q Consensus       221 ~v-~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~----------~~~~v~~i~~~~~~~~~~~~~~l~s~~  289 (401)
                      ++ ..+.+. +++..++..+..+.+++.|........+..+.-          .......++++|+.     ..++++..
T Consensus       265 p~~~~~~~~-~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg-----~rlyVa~~  338 (426)
T 3c75_H          265 LLINHPAFS-LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS-----DRIYLLVD  338 (426)
T ss_dssp             CBCSCCEEC-TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG-----TEEEEEEE
T ss_pred             ceeeEeeec-CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC-----CEEEEEec
Confidence            11 124556 677777777788999999986443211111110          01112236788873     34444432


Q ss_pred             ---------CCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEe-cCCEEEEEeCCCCCCCcce
Q psy17342        290 ---------YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVE-VAGRVDLWNLNLDTEVPAT  351 (401)
Q Consensus       290 ---------~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~  351 (401)
                               .++.|.+.|..+.+.+.++.. .....+++|+|+++.++++.. .++.|.++|+.+.+.+..+
T Consensus       339 ~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          339 QRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             ECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             ccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence                     135799999999999999876 335789999999973445555 6999999999998765443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.38  E-value=1.1e-09  Score=94.28  Aligned_cols=231  Identities=9%  Similarity=-0.044  Sum_probs=147.0

Q ss_pred             eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEE
Q psy17342         68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWD  147 (401)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~  147 (401)
                      .....|+|++..++....         .++.|..||.++++..   .......+.+++|.|++ +++++. . ..|.+||
T Consensus        51 ~egp~~~~~~~~l~~~d~---------~~~~i~~~d~~~~~~~---~~~~~~~v~~i~~~~dg-~l~v~~-~-~gl~~~d  115 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNI---------LERELHELHLASGRKT---VHALPFMGSALAKISDS-KQLIAS-D-DGLFLRD  115 (326)
T ss_dssp             EEEEEEETTTTEEEEEEG---------GGTEEEEEETTTTEEE---EEECSSCEEEEEEEETT-EEEEEE-T-TEEEEEE
T ss_pred             CcCCeEeCCCCEEEEEEC---------CCCEEEEEECCCCcEE---EEECCCcceEEEEeCCC-eEEEEE-C-CCEEEEE
Confidence            567889998766666663         5789999999865422   22345689999999987 555543 3 4599999


Q ss_pred             CCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC----CcEEEeeccCCCCCccccccccccccCCccceE
Q psy17342        148 TRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND----GRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL  223 (401)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (401)
                      ..+++.......  ........+.++++  ++++.++++...+    +...+|.+.. +....   +..     ......
T Consensus       116 ~~~g~~~~~~~~--~~~~~~~~~~~i~~--d~~G~l~v~~~~~~~~~~~~~l~~~~~-g~~~~---~~~-----~~~~~~  182 (326)
T 2ghs_A          116 TATGVLTLHAEL--ESDLPGNRSNDGRM--HPSGALWIGTMGRKAETGAGSIYHVAK-GKVTK---LFA-----DISIPN  182 (326)
T ss_dssp             TTTCCEEEEECS--STTCTTEEEEEEEE--CTTSCEEEEEEETTCCTTCEEEEEEET-TEEEE---EEE-----EESSEE
T ss_pred             CCCCcEEEEeeC--CCCCCCCCCCCEEE--CCCCCEEEEeCCCcCCCCceEEEEEeC-CcEEE---eeC-----CCcccC
Confidence            877654322110  00111246788988  8899876655421    2334444432 21111   111     223467


Q ss_pred             EEEeccCCCCeEE-EEcCCceEEEEeCC--CC-CCC---ceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEE
Q psy17342        224 SLAFPQNDVNNFV-VGCEDGNVYSACRH--GN-KAG---NVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKL  296 (401)
Q Consensus       224 ~~~~~~~~~~~l~-~~~~d~~i~~~~~~--~~-~~~---~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~i  296 (401)
                      .++|+ ++++.++ +.+.++.|++|+..  .. ...   ....+.........+.+.++      +.++++...++.|.+
T Consensus       183 ~i~~s-~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~------G~lwva~~~~~~v~~  255 (326)
T 2ghs_A          183 SICFS-PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE------GHIWNARWGEGAVDR  255 (326)
T ss_dssp             EEEEC-TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT------SCEEEEEETTTEEEE
T ss_pred             CeEEc-CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCC------CCEEEEEeCCCEEEE
Confidence            89999 7887664 44567899999975  22 111   12223333455678888887      677777766789999


Q ss_pred             EEeeCCCceEEEeecCCceEEEEEC-CCCCcEEEEEecC
Q psy17342        297 WNIKENKPVHSFNEFRDYVMDVQWS-PINPALFATVEVA  334 (401)
Q Consensus       297 wd~~~~~~~~~~~~~~~~v~~v~~~-~~~~~~l~~~~~d  334 (401)
                      ||. +++.+..+..+...+.+++|+ |+++.++++...+
T Consensus       256 ~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          256 YDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             ECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             ECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence            998 677777777766779999998 8887555655544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.34  E-value=6e-10  Score=95.11  Aligned_cols=231  Identities=10%  Similarity=0.045  Sum_probs=147.5

Q ss_pred             EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEE
Q psy17342        115 FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLC  194 (401)
Q Consensus       115 ~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~  194 (401)
                      ...........|+|++..+++++..++.|..|+.. +... .      +..+...+..+++  .+++.++++...++.|.
T Consensus        41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~-~------~~~~~~~~~gl~~--d~dG~l~v~~~~~~~v~  110 (305)
T 3dr2_A           41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVD-V------LLDATAFTNGNAV--DAQQRLVHCEHGRRAIT  110 (305)
T ss_dssp             ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEE-E------EEESCSCEEEEEE--CTTSCEEEEETTTTEEE
T ss_pred             ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEE-E------EeCCCCccceeeE--CCCCCEEEEECCCCEEE
Confidence            33455677899999886688888888999999874 3321 1      2234567889998  88998776666667899


Q ss_pred             EeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEE----EcC-------------CceEEEEeCCCCCCCce
Q psy17342        195 SWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV----GCE-------------DGNVYSACRHGNKAGNV  257 (401)
Q Consensus       195 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~----~~~-------------d~~i~~~~~~~~~~~~~  257 (401)
                      +|+..  +........ .  .......+..+++. ++++++++    |..             .+.|+.++....+.   
T Consensus       111 ~~~~~--g~~~~~~~~-~--~~~~~~~~~~i~~d-~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~---  181 (305)
T 3dr2_A          111 RSDAD--GQAHLLVGR-Y--AGKRLNSPNDLIVA-RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL---  181 (305)
T ss_dssp             EECTT--SCEEEEECE-E--TTEECSCCCCEEEC-TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC---
T ss_pred             EECCC--CCEEEEEec-c--CCCccCCCCCEEEC-CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE---
Confidence            99875  221111100 0  00112346778999 78887775    432             35678887753332   


Q ss_pred             eeecCCCCceeeeecCccCCCCCCCcEEEEEeCC------CeEEEEEeeCCCceEE---E-eecCCceEEEEECCCCCcE
Q psy17342        258 ECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD------WSVKLWNIKENKPVHS---F-NEFRDYVMDVQWSPINPAL  327 (401)
Q Consensus       258 ~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~---~-~~~~~~v~~v~~~~~~~~~  327 (401)
                      ..+. .......++|+|+      ++.|+.+...      +.|.+|++..+. +..   + .........++++++|. +
T Consensus       182 ~~~~-~~~~p~gl~~spd------g~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-l  252 (305)
T 3dr2_A          182 QRMA-DLDHPNGLAFSPD------EQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-L  252 (305)
T ss_dssp             EEEE-EESSEEEEEECTT------SSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-E
T ss_pred             EEEe-cCCCCcceEEcCC------CCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-E
Confidence            2222 3345678999998      6766666554      789999997654 221   1 11233456789999997 4


Q ss_pred             EEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCC
Q psy17342        328 FATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG  380 (401)
Q Consensus       328 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  380 (401)
                      .++. .+ .|.+|+.. ++....+.    ....+.+++|+++++.|+.++.++
T Consensus       253 wv~~-~~-gv~~~~~~-g~~~~~~~----~~~~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          253 WSSS-GT-GVCVFDSD-GQLLGHIP----TPGTASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             EECC-SS-EEEEECTT-SCEEEEEE----CSSCCCEEEECTTSCEEEEEETTE
T ss_pred             EEec-CC-cEEEECCC-CCEEEEEE----CCCceeEEEEeCCCCEEEEEcCCe
Confidence            4443 44 59999984 44333332    223588899999998888888765

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.31  E-value=6.6e-11  Score=102.58  Aligned_cols=267  Identities=6%  Similarity=-0.083  Sum_probs=158.0

Q ss_pred             EEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEe---------cCCeEEEEECCCCCCCceeecccccc-CCC
Q psy17342         98 VCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGT---------YSGQIVLWDTRVQKKTPVHRTPLSVM-AHT  167 (401)
Q Consensus        98 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~---------~dg~v~iw~~~~~~~~~~~~~~~~~~-~~~  167 (401)
                      .|.++|..+++.+.++..+. .+  .+.++|+++.+.++.+         .++.|.+||..+.+.......+-... ...
T Consensus        47 ~vsvID~~t~~v~~~i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g  123 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred             eEEEEECCCCeEEEEEeCCC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence            89999999988887776663 34  7999999865554432         47889999999987653322100000 001


Q ss_pred             CcEEEEEEeecCCceEEEEEeC--CCcEEE--eeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCce
Q psy17342        168 HPVFCMSVIGTQNAHNLISISN--DGRLCS--WSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGN  243 (401)
Q Consensus       168 ~~v~~~~~~~~~~~~~l~s~~~--dg~i~~--wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  243 (401)
                      .....+++  +|++++++++..  +..+.+  +|..+    ...+....           +..+.|.....+++.+.|+.
T Consensus       124 ~~P~~ia~--SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v~~-----------~~~~~p~g~~~~~~~~~dg~  186 (368)
T 1mda_H          124 PRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGASD----DQLTKSAS-----------CFHIHPGAAATHYLGSCPAS  186 (368)
T ss_dssp             CCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTEE----EEEEECSS-----------CCCCEEEETTEEECCCCTTS
T ss_pred             CCcceEEE--cCCCCEEEEEccCCCCeEEEEEEchhh----ceEEECCC-----------ceEEccCCCeEEEEEcCCCC
Confidence            22346777  999999998875  356888  88864    11111110           01123223344555666777


Q ss_pred             EEEEeCCC-----CCCCce--eeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC--ceEEEee----
Q psy17342        244 VYSACRHG-----NKAGNV--ECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK--PVHSFNE----  310 (401)
Q Consensus       244 i~~~~~~~-----~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~----  310 (401)
                      +.+.+...     .+....  ..+.....+.   . .+.      +..++..+. +.+.+.|.....  .+..+..    
T Consensus       187 ~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~------~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~  255 (368)
T 1mda_H          187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANY------PGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESG  255 (368)
T ss_dssp             CEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETT------TTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTH
T ss_pred             EEEEECccccccCCeEEEEeeeeeeCCCCcc---c-ccc------CCEEEEEcC-CEEEEEECCCCcceEEEEEEecccc
Confidence            77777653     110000  0011112232   2 333      344444445 899999986532  1222211    


Q ss_pred             ------cCCceEEEEECCCCCcEEEEEe---c-----CCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcE-EEE
Q psy17342        311 ------FRDYVMDVQWSPINPALFATVE---V-----AGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQ-LCV  375 (401)
Q Consensus       311 ------~~~~v~~v~~~~~~~~~l~~~~---~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~  375 (401)
                            .......++++|+++.++++..   .     ++.+.++|+.+.+.+..+...    .....++|+|||+. +++
T Consensus       256 ~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg----~~p~gi~~s~Dg~~l~va  331 (368)
T 1mda_H          256 RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG----HDSDAIIAAQDGASDNYA  331 (368)
T ss_dssp             HHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE----EEECEEEECCSSSCEEEE
T ss_pred             ccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC----CCcceEEECCCCCEEEEE
Confidence                  0111122689999986665544   2     235669999998877666532    24788999999984 555


Q ss_pred             Ee-cCCcEEEEEeccCccceeeeeecC
Q psy17342        376 GD-EKGAITMFDVGEVGIACLKFITSG  401 (401)
Q Consensus       376 ~~-~dg~v~iw~~~~~~~~~l~~~~~g  401 (401)
                      .. .++.|.++|+.+.  +.+++++.|
T Consensus       332 ~~~~~~~VsVID~~t~--kvv~~I~vg  356 (368)
T 1mda_H          332 NSAGTEVLDIYDAASD--QDQSSVELD  356 (368)
T ss_dssp             EETTTTEEEEEESSSC--EEEEECCCC
T ss_pred             ccCCCCeEEEEECCCC--cEEEEEECC
Confidence            55 5899999999998  566766543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.26  E-value=1.1e-09  Score=95.11  Aligned_cols=248  Identities=8%  Similarity=-0.043  Sum_probs=145.2

Q ss_pred             CCeeEEEEeCCCCceEEEEe--cCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-----CC
Q psy17342        119 SPVLSCCFAKFNPYLILGGT--YSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-----DG  191 (401)
Q Consensus       119 ~~v~~~~~~~~~~~~l~~g~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg  191 (401)
                      ..+..++++|++ +++++..  .++.++||.+.++...+..........|-..+..+++  .+++.++++-..     ++
T Consensus        17 ~~p~~va~~~~g-~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~--d~~g~L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDG-RLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKS--DGNGIVWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTTS-CEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEE--CSSSEEEEEECHHHHTSCC
T ss_pred             CCcceEEECCCC-CEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEE--cCCCcEEEEcCCCCcCCCC
Confidence            678999999987 6777653  2343566666533221100000011245678999999  888876665543     57


Q ss_pred             cEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc---CCceEEEEeCCCCCCCceeeecCC-----
Q psy17342        192 RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC---EDGNVYSACRHGNKAGNVECYEGH-----  263 (401)
Q Consensus       192 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~~~~~~~~~~~~~~~~~~~-----  263 (401)
                      .|.+||+.+.. ....+.+... ...+...+..++++|.++..+++..   .++.|.+||....+  ....+.+|     
T Consensus        94 ~i~~~d~~tg~-~~~~~~~~~~-~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~--~~r~~~~~~~~~~  169 (343)
T 2qe8_A           94 KLVAWDTLNNQ-LSRVIYLPPP-ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL--AARVLQGYPGIAP  169 (343)
T ss_dssp             EEEEEETTTTE-EEEEEECCTT-TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC--EEEECTTCTTTSC
T ss_pred             eEEEEECCCCe-EEEEEECChh-hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC--EEEEecCCCcccc
Confidence            89999987522 1222222110 1112345678899833344445544   57889999986432  22222221     


Q ss_pred             ------------------------CCceeeeecCccCCCCCCCcEEEEEeCCC-eEEEEEeeC---CC-----ce--EEE
Q psy17342        264 ------------------------EGPVVGLSSHRAQGHIDFSHLYLTSSYDW-SVKLWNIKE---NK-----PV--HSF  308 (401)
Q Consensus       264 ------------------------~~~v~~i~~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~---~~-----~~--~~~  308 (401)
                                              ...+..|+++|+      ++.|+.+..++ .+..++...   +.     ..  ...
T Consensus       170 ~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~d------g~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  243 (343)
T 2qe8_A          170 EDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAE------NEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIER  243 (343)
T ss_dssp             CSCCCEETTEECBEECTTSCEECCCCCEEEEEECTT------SCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEE
T ss_pred             cccceeECCEEEEeccCCCceeceecccceeEeccC------CCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEe
Confidence                                    123577899998      67777776655 444444321   10     00  022


Q ss_pred             eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcE
Q psy17342        309 NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAI  382 (401)
Q Consensus       309 ~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  382 (401)
                      .++.+....++++++|. ++++...++.|.+||..+++. ..+.. .........++|.++|+++++.+..+.+
T Consensus       244 ~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G~~-~~~~~-~~~~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          244 YSEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADRAY-KLLVT-DEKLSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             EEECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTTEE-EEEEE-CGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             cccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCCCE-EEEEE-CCceecCCeeEECCCCcEEEEeCccccc
Confidence            23344567899999996 888888899999999844432 12111 1223458899999999888877654433

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.26  E-value=7.2e-10  Score=96.06  Aligned_cols=263  Identities=8%  Similarity=-0.057  Sum_probs=157.0

Q ss_pred             EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEec------CCCeeEEEEeCCCCceEEEEec--CC
Q psy17342         70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC------QSPVLSCCFAKFNPYLILGGTY--SG  141 (401)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~g~~--dg  141 (401)
                      .+.++||++++.++.....+...+..++.|.+||..+++.+.++..+.      ......++++|+++ +++.+..  +.
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk-~lyVan~~~~~  147 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA-CLLFFLFGSSA  147 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS-CEEEEECSSSC
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC-EEEEEccCCCC
Confidence            799999999999887432222222347899999999988877766541      13467899999985 4444443  45


Q ss_pred             eEEE--EECCCCCCCceeeccccccCCCCcEEEEEEeecCCc-eEEEEEeCCCcEEEeeccC----CCCCcccccccccc
Q psy17342        142 QIVL--WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNA-HNLISISNDGRLCSWSLEM----LSSPQETRDLQYNN  214 (401)
Q Consensus       142 ~v~i--w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~----~~~~~~~~~~~~~~  214 (401)
                      .|.+  +|..+   ...    +...+   .   ...  .+++ ..+++.+.||.+.+.++..    .++...... ..  
T Consensus       148 ~v~V~~iD~~t---v~~----i~v~~---~---~~~--~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~~--  209 (368)
T 1mda_H          148 AAGLSVPGASD---DQL----TKSAS---C---FHI--HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT-GA--  209 (368)
T ss_dssp             EEEEEETTTEE---EEE----EECSS---C---CCC--EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC-TT--
T ss_pred             eEEEEEEchhh---ceE----EECCC---c---eEE--ccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee-ee--
Confidence            7888  88876   111    11111   0   111  1222 3455667788888888764    111110000 00  


Q ss_pred             ccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC-------C---CCceeeeecCccCCCCCCCcE
Q psy17342        215 KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG-------H---EGPVVGLSSHRAQGHIDFSHL  284 (401)
Q Consensus       215 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~-------~---~~~v~~i~~~~~~~~~~~~~~  284 (401)
                      ......+.   . . +++..++..+. +.+.+.|........+..+.-       +   ......+.++|+      ++.
T Consensus       210 i~vg~~P~---~-~-~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d------g~~  277 (368)
T 1mda_H          210 QNCSSQAA---Q-A-NYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN------TDG  277 (368)
T ss_dssp             SCBCSCCE---E-E-TTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT------TTE
T ss_pred             eeCCCCcc---c-c-ccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC------CCE
Confidence            00011222   2 4 45566666666 899999986433222222211       0   011122678887      444


Q ss_pred             EEE-Ee---C-----CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEe-cCCEEEEEeCCCCCCCcceEEe
Q psy17342        285 YLT-SS---Y-----DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVE-VAGRVDLWNLNLDTEVPATSAI  354 (401)
Q Consensus       285 l~s-~~---~-----d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~  354 (401)
                      +.. ..   .     ++.+.++|+.+.+.+.++.... ...+++|+|+++.++++.. .++.|.++|+.+.+.+..+.  
T Consensus       278 lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~--  354 (368)
T 1mda_H          278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE--  354 (368)
T ss_dssp             EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC--
T ss_pred             EEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE--
Confidence            444 33   1     2356699999999988887643 6889999999986778877 69999999999987654442  


Q ss_pred             ecCCCCeEEEEecC
Q psy17342        355 VEGAPALSRVTWTP  368 (401)
Q Consensus       355 ~~~~~~v~~~~~s~  368 (401)
                        -......+++.+
T Consensus       355 --vg~~P~~i~~~~  366 (368)
T 1mda_H          355 --LDKGPESLSVQN  366 (368)
T ss_dssp             --CCSCCCEEECCC
T ss_pred             --CCCCCCEEEeec
Confidence              233344555543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.25  E-value=9e-09  Score=89.80  Aligned_cols=233  Identities=14%  Similarity=0.109  Sum_probs=139.5

Q ss_pred             CCCCceEEEEecCCeEEEEECCCCCCCceeecccc---cc-C-CCCcEEEEEEeecCCceEEEEEeCC------CcEEEe
Q psy17342        128 KFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLS---VM-A-HTHPVFCMSVIGTQNAHNLISISND------GRLCSW  196 (401)
Q Consensus       128 ~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~---~~-~-~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~~w  196 (401)
                      ++...+++.|..++.|.++|+.+....+.....+.   +. . -...-..+..  .|++ .++++..+      |.|.++
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~--~pdG-i~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHC--GPDA-IYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEE--CSSC-EEEEEEEETTSCSCCEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeE--CCCe-EEEEcCCCcCCCCCCeEEEE
Confidence            77767888888899999999976543333221110   10 0 1112334444  7888 66666555      689999


Q ss_pred             eccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc-------------------CCceEEEEeCCCCCCCce
Q psy17342        197 SLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-------------------EDGNVYSACRHGNKAGNV  257 (401)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------------------~d~~i~~~~~~~~~~~~~  257 (401)
                      |..+.. .........    ....--+.+.|+ ++++.+++..                   ....|.+||+...  +.+
T Consensus       170 D~~T~~-v~~~~~~~~----~~~~~~Yd~~~~-p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~--k~~  241 (462)
T 2ece_A          170 DHYSFE-PLGKWEIDR----GDQYLAYDFWWN-LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR--KRI  241 (462)
T ss_dssp             CTTTCC-EEEECCSBC----TTCCCCCCEEEE-TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT--EEE
T ss_pred             ECCCCe-EEEEEccCC----CCccccceEEEC-CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC--cEe
Confidence            987632 222222211    011223457778 7888877774                   4788999999853  344


Q ss_pred             eeecCC-C-Cceeee--ecCccCCCCCCCcEEEEEe------CCCeEEEEEeeCCCc--eEEE--eec------------
Q psy17342        258 ECYEGH-E-GPVVGL--SSHRAQGHIDFSHLYLTSS------YDWSVKLWNIKENKP--VHSF--NEF------------  311 (401)
Q Consensus       258 ~~~~~~-~-~~v~~i--~~~~~~~~~~~~~~l~s~~------~d~~i~iwd~~~~~~--~~~~--~~~------------  311 (401)
                      .++..- . .....+  +++|+      ++++..++      .+++|.+|....++.  ++.+  ...            
T Consensus       242 ~tI~vg~~g~~P~~i~f~~~Pd------g~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~  315 (462)
T 2ece_A          242 HSLTLGEENRMALELRPLHDPT------KLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP  315 (462)
T ss_dssp             EEEESCTTEEEEEEEEECSSTT------CCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred             eEEecCCCCCccceeEeeECCC------CCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence            454432 1 222334  45888      55555444      577888877665421  1111  110            


Q ss_pred             ----CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceE-EeecCC-------------CCeEEEEecCCCcEE
Q psy17342        312 ----RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATS-AIVEGA-------------PALSRVTWTPNGTQL  373 (401)
Q Consensus       312 ----~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~-------------~~v~~~~~s~~g~~l  373 (401)
                          ......+.++|+++.++++.-..+.|.+||+.......... ...++.             ..-..++++|||++|
T Consensus       316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L  395 (462)
T 2ece_A          316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV  395 (462)
T ss_dssp             GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred             cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence                23467899999999777777778999999997443222221 222211             135779999999999


Q ss_pred             EEEe
Q psy17342        374 CVGD  377 (401)
Q Consensus       374 ~~~~  377 (401)
                      +++.
T Consensus       396 yVaN  399 (462)
T 2ece_A          396 YVTN  399 (462)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9888

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.21  E-value=4.8e-09  Score=89.46  Aligned_cols=235  Identities=9%  Similarity=0.008  Sum_probs=143.2

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      .......|+|+++.|+....         .++.|..|+.. ++ ...+ ......+..+++.+++ +++++...++.|.+
T Consensus        45 ~~~egp~~~~~g~~l~~~d~---------~~~~i~~~~~~-g~-~~~~-~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~  111 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDL---------VGRRVLGWRED-GT-VDVL-LDATAFTNGNAVDAQQ-RLVHCEHGRRAITR  111 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEET---------TTTEEEEEETT-SC-EEEE-EESCSCEEEEEECTTS-CEEEEETTTTEEEE
T ss_pred             cCccCCeEeCCCCEEEEEEC---------CCCEEEEEeCC-CC-EEEE-eCCCCccceeeECCCC-CEEEEECCCCEEEE
Confidence            44678899999986666662         68899999884 43 2222 2345678999999987 56666555578999


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEE----EeC-------------CCcEEEeeccCCCCCcccc
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLIS----ISN-------------DGRLCSWSLEMLSSPQETR  208 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s----~~~-------------dg~i~~wd~~~~~~~~~~~  208 (401)
                      |+.+ ++....... . .......+.++++  .++|..+++    +..             .+.|..+|.... ......
T Consensus       112 ~~~~-g~~~~~~~~-~-~~~~~~~~~~i~~--d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-~~~~~~  185 (305)
T 3dr2_A          112 SDAD-GQAHLLVGR-Y-AGKRLNSPNDLIV--ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-PLQRMA  185 (305)
T ss_dssp             ECTT-SCEEEEECE-E-TTEECSCCCCEEE--CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-CCEEEE
T ss_pred             ECCC-CCEEEEEec-c-CCCccCCCCCEEE--CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC-cEEEEe
Confidence            9976 332211100 0 0011234567888  889987776    332             245666665431 111111


Q ss_pred             ccccccccCCccceEEEEeccCCCCeEEEEcCC------ceEEEEeCCCCCCCceeee-cCCCCceeeeecCccCCCCCC
Q psy17342        209 DLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED------GNVYSACRHGNKAGNVECY-EGHEGPVVGLSSHRAQGHIDF  281 (401)
Q Consensus       209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~  281 (401)
                               .......++|+ ++++.|+++...      +.|++|++..........+ ....+....+.+.++      
T Consensus       186 ---------~~~~p~gl~~s-pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~------  249 (305)
T 3dr2_A          186 ---------DLDHPNGLAFS-PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRG------  249 (305)
T ss_dssp             ---------EESSEEEEEEC-TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTT------
T ss_pred             ---------cCCCCcceEEc-CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCC------
Confidence                     11245778999 788877776554      6899998764321001111 112344567888887      


Q ss_pred             CcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEe
Q psy17342        282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN  341 (401)
Q Consensus       282 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd  341 (401)
                      +++.++. .+ .|.+|+. .++.+..+..+. .+..++|+|+++.+ ..++.+ .+..++
T Consensus       250 G~lwv~~-~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L-~it~~~-~l~~~~  303 (305)
T 3dr2_A          250 GWLWSSS-GT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRL-FITGGP-CLWMLP  303 (305)
T ss_dssp             SCEEECC-SS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEE-EEEETT-EEEEEE
T ss_pred             CCEEEec-CC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEE-EEEcCC-eEEEEE
Confidence            6655444 44 5999997 577777777654 58899999998744 444444 343333

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.16  E-value=1.9e-09  Score=101.95  Aligned_cols=279  Identities=12%  Similarity=0.072  Sum_probs=160.1

Q ss_pred             CCcEEEEEeCcCCCCCceEEEecCC----------CeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecccccc
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFCQS----------PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVM  164 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~  164 (401)
                      .++.|..+|.++++.+-++......          ....+++.  + ..++.++.|+.|..+|..+++.......... .
T Consensus        85 ~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~--~-~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~-~  160 (677)
T 1kb0_A           85 SWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--K-GKVYVGAWDGRLIALDAATGKEVWHQNTFEG-Q  160 (677)
T ss_dssp             GGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--T-TEEEEECTTSEEEEEETTTCCEEEEEETTTT-C
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE--C-CEEEEEcCCCEEEEEECCCCCEEeeecCCcC-c
Confidence            4788899998887665443322110          01223332  3 4677778899999999998876533321100 0


Q ss_pred             CCCCcEEE-EEEeecCCceEEEEEeC------CCcEEEeeccCCCCCccccccccccc----------------c-----
Q psy17342        165 AHTHPVFC-MSVIGTQNAHNLISISN------DGRLCSWSLEMLSSPQETRDLQYNNK----------------Q-----  216 (401)
Q Consensus       165 ~~~~~v~~-~~~~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~~~~~----------------~-----  216 (401)
                      .....+.+ ...   .++ .++.++.      ++.|..+|..++.. .-.........                .     
T Consensus       161 ~~~~~~~~~p~v---~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~-~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~  235 (677)
T 1kb0_A          161 KGSLTITGAPRV---FKG-KVIIGNGGAEYGVRGYITAYDAETGER-KWRWFSVPGDPSKPFEDESMKRAARTWDPSGKW  235 (677)
T ss_dssp             CSSCBCCSCCEE---ETT-EEEECCBCTTTCCBCEEEEEETTTCCE-EEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCH
T ss_pred             CcCcccccCcEE---ECC-EEEEEecccccCCCCEEEEEECCCCcE-EEEeccCCCCccccccccccccccccccccCce
Confidence            00011111 111   133 3444432      68899999876332 11111110000                0     


Q ss_pred             ----CCccceEEEEeccCCCCeEEEEcCCc-------------------eEEEEeCCCCCCCceeeecC--CCCc-----
Q psy17342        217 ----TKNLAVLSLAFPQNDVNNFVVGCEDG-------------------NVYSACRHGNKAGNVECYEG--HEGP-----  266 (401)
Q Consensus       217 ----~~~~~v~~~~~~~~~~~~l~~~~~d~-------------------~i~~~~~~~~~~~~~~~~~~--~~~~-----  266 (401)
                          +.......++++ ++...+++++.++                   .|..+|..+.+  .+-.++.  |...     
T Consensus       236 ~~~~~g~~~w~~~~~d-~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~--~~W~~~~~~~d~wd~~~~  312 (677)
T 1kb0_A          236 WEAGGGGTMWDSMTFD-AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGK--YKWHYQETPGDNWDYTST  312 (677)
T ss_dssp             HHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC--EEEEEESSTTCCSCCCCC
T ss_pred             eEeCCCcccccceeEc-CCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCC--EEEEEecCCCcccccccC
Confidence                011112356777 6778888887765                   48888887443  3434332  2110     


Q ss_pred             --eeeeecCccCCCCCCC---cEEEEEeCCCeEEEEEeeCCCceEEEeecC-----------Cce---------------
Q psy17342        267 --VVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLWNIKENKPVHSFNEFR-----------DYV---------------  315 (401)
Q Consensus       267 --v~~i~~~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~v---------------  315 (401)
                        ..-+....+      +   ..++.++.+|.++++|.++++.+..+....           .++               
T Consensus       313 ~~p~l~~~~~d------G~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~  386 (677)
T 1kb0_A          313 QPMILADIKIA------GKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAV  386 (677)
T ss_dssp             SCCEEEEEEET------TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECS
T ss_pred             CCcEEEecccC------CcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEEC
Confidence              111111112      3   678889999999999999999887765321           011               


Q ss_pred             ---------EEEEECCCCCcEEEEEec-------------------------------------------CCEEEEEeCC
Q psy17342        316 ---------MDVQWSPINPALFATVEV-------------------------------------------AGRVDLWNLN  343 (401)
Q Consensus       316 ---------~~v~~~~~~~~~l~~~~~-------------------------------------------d~~i~iwd~~  343 (401)
                               ..++++|++. ++++...                                           .|.|..||+.
T Consensus       387 P~~~G~~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~  465 (677)
T 1kb0_A          387 PGPYGAHNWHPMSFNPQTG-LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPV  465 (677)
T ss_dssp             SCTTCSSCSSCCEEETTTT-EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETT
T ss_pred             cCcccccCCCCceEcCCCC-EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCC
Confidence                     1468889887 5555432                                           2789999999


Q ss_pred             CCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeee
Q psy17342        344 LDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFI  398 (401)
Q Consensus       344 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~  398 (401)
                      +++.+.....    ..++....+..++..+++++.||.+++||..+++  .+..+
T Consensus       466 tG~~~W~~~~----~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~--~lw~~  514 (677)
T 1kb0_A          466 AQKAAWSVEH----VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE--KLWEA  514 (677)
T ss_dssp             TTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC--EEEEE
T ss_pred             CCcEEeecCC----CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc--eeeee
Confidence            9886655432    2334445566788889999999999999999984  44444

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.13  E-value=4.1e-11  Score=105.09  Aligned_cols=185  Identities=11%  Similarity=0.042  Sum_probs=98.7

Q ss_pred             CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceee
Q psy17342        180 NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVEC  259 (401)
Q Consensus       180 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~  259 (401)
                      ++..+++++.||.|..||..++. .......         ..+.+..+. .++..+++++.|+.|+.||..+.+  .+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~-~~W~~~~---------~~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~tG~--~~w~   74 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGS-IKWTLKE---------DPVLQVPTH-VEEPAFLPDPNDGSLYTLGSKNNE--GLTK   74 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCC-EEEEEEC---------CCSCCCC------CCEEECTTTCCEEEC-----C--CSEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCC-EEEEecC---------CCceecceE-cCCCEEEEeCCCCEEEEEECCCCc--eeee
Confidence            56789999999999999987632 2222111         123333334 456778888999999999986433  2333


Q ss_pred             ecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEE
Q psy17342        260 YEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDL  339 (401)
Q Consensus       260 ~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~i  339 (401)
                      +..+.....  ..+|...  . +..+++++.|+.++.||.++|+.+.++..+.    ...++|++. .+++++.|+.|+.
T Consensus        75 ~~~~~~~~~--~~sp~~~--~-~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~-~v~~~~~dg~v~a  144 (369)
T 2hz6_A           75 LPFTIPELV--QASPCRS--S-DGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTS-LLYLGRTEYTITM  144 (369)
T ss_dssp             CSCCHHHHH--TTCSCC--------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEEC
T ss_pred             eeccCcccc--ccCceEe--c-CCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCC-EEEEEecCCEEEE
Confidence            332211110  1122100  0 4567778889999999999999988877643    234567765 6778888999999


Q ss_pred             EeCCCCCCCcceEEeecCCCCeEEEEecCCC---cEEEEEecCCcEEEEEeccCcc
Q psy17342        340 WNLNLDTEVPATSAIVEGAPALSRVTWTPNG---TQLCVGDEKGAITMFDVGEVGI  392 (401)
Q Consensus       340 wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~~~~dg~v~iw~~~~~~~  392 (401)
                      ||.++++.+..+....     .....++.+.   ..+++++.||.|+.||..+++.
T Consensus       145 ~d~~tG~~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          145 YDTKTRELRWNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             CCSSSSSCCCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred             EECCCCCEEEeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence            9999998776654321     1123334432   5677788999999999998853

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.12  E-value=2.5e-09  Score=92.87  Aligned_cols=233  Identities=7%  Similarity=0.007  Sum_probs=142.7

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-----cCCCeeEEEEeCCCCceEEEEe
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-----CQSPVLSCCFAKFNPYLILGGT  138 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~g~  138 (401)
                      +-..+..++++|+++.+++-. +.    ....++.|.+||+++++.+..+.+.     +...+..+++.|++..++++..
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~-g~----~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~  139 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDN-GN----QSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDP  139 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEEC-HH----HHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEEC
T ss_pred             ceeEeeEEEEcCCCcEEEEcC-CC----CcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcC
Confidence            335799999999986444433 00    0001478999999877755555442     1235689999986545656655


Q ss_pred             ---cCCeEEEEECCCCCCCceeeccccccCCCCcEE-EEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccccc
Q psy17342        139 ---YSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVF-CMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNN  214 (401)
Q Consensus       139 ---~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~  214 (401)
                         .++.|.+||+.+++....      +..|..... ...+  ..++..+.+.+.++.++.|..                
T Consensus       140 ~~~~~~~i~v~d~~~g~~~r~------~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~~----------------  195 (343)
T 2qe8_A          140 APDDKAALIRVDLQTGLAARV------LQGYPGIAPEDIDL--VIDGVPVQIGQPDGTVIRPHL----------------  195 (343)
T ss_dssp             CSGGGCEEEEEETTTCCEEEE------CTTCTTTSCCSCCC--EETTEECBEECTTSCEECCCC----------------
T ss_pred             ccCCCCeEEEEECCCCCEEEE------ecCCCcccccccce--eECCEEEEeccCCCceeceec----------------
Confidence               678999999987653211      122211100 0222  346667777777877765531                


Q ss_pred             ccCCccceEEEEeccCCCCeEEEEcCCc-eEEEEeCCC---CCCC---cee--eecCCCCceeeeecCccCCCCCCCcEE
Q psy17342        215 KQTKNLAVLSLAFPQNDVNNFVVGCEDG-NVYSACRHG---NKAG---NVE--CYEGHEGPVVGLSSHRAQGHIDFSHLY  285 (401)
Q Consensus       215 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~~~~~~~---~~~~---~~~--~~~~~~~~v~~i~~~~~~~~~~~~~~l  285 (401)
                            .+..++++ ++++.|+++...+ .++.++...   ....   ...  ...++.+....+++.++      +.++
T Consensus       196 ------~~~gia~s-~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~------G~l~  262 (343)
T 2qe8_A          196 ------GVNGIVLD-AENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKD------HNIY  262 (343)
T ss_dssp             ------CEEEEEEC-TTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTT------CCEE
T ss_pred             ------ccceeEec-cCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCC------CCEE
Confidence                  35679999 7888888776555 666665321   0000   000  11234445677899887      7888


Q ss_pred             EEEeCCCeEEEEEeeCCCceEEEee-cCCceEEEEECCCCCcEEEEEecCCEEEE
Q psy17342        286 LTSSYDWSVKLWNIKENKPVHSFNE-FRDYVMDVQWSPINPALFATVEVAGRVDL  339 (401)
Q Consensus       286 ~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~~l~~~~~d~~i~i  339 (401)
                      ++...++.|.+||..+++....... +...+.+++|.+++. ++++.+..+.+.+
T Consensus       263 va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~-l~v~~~~~~~~~~  316 (343)
T 2qe8_A          263 VGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY-LYFDCNQLHHSAP  316 (343)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC-EEEEECCGGGSGG
T ss_pred             EEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc-EEEEeCccccccc
Confidence            8888899999999855653322222 234688999999986 6666654444433

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.10  E-value=8.2e-08  Score=84.44  Aligned_cols=270  Identities=10%  Similarity=0.006  Sum_probs=149.2

Q ss_pred             CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCee-EEEEeCCCCceEEEEecCCeEEEEECCCCCCCc
Q psy17342         77 HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVL-SCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTP  155 (401)
Q Consensus        77 ~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~  155 (401)
                      +..+++++          .++.|..+|.++++..-.....  ..+. .....  + ..++.++.++.|..+|..+++...
T Consensus       103 ~~~v~v~~----------~~g~l~a~d~~tG~~~W~~~~~--~~~~~~p~~~--~-~~v~v~~~~g~l~~~d~~tG~~~W  167 (376)
T 3q7m_A          103 GGHVYIGS----------EKAQVYALNTSDGTVAWQTKVA--GEALSRPVVS--D-GLVLIHTSNGQLQALNEADGAVKW  167 (376)
T ss_dssp             TTEEEEEE----------TTSEEEEEETTTCCEEEEEECS--SCCCSCCEEE--T-TEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEc----------CCCEEEEEECCCCCEEEEEeCC--CceEcCCEEE--C-CEEEEEcCCCeEEEEECCCCcEEE
Confidence            44677777          6899999999988765444332  2221 12222  3 366777789999999998887543


Q ss_pred             eeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEecc-CCCCe
Q psy17342        156 VHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQ-NDVNN  234 (401)
Q Consensus       156 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~  234 (401)
                      ........... ........    .+..++.++.++.+..+|..++. ..................+..+...| ..+..
T Consensus       168 ~~~~~~~~~~~-~~~~~~~~----~~~~v~~g~~~g~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  241 (376)
T 3q7m_A          168 TVNLDMPSLSL-RGESAPTT----AFGAAVVGGDNGRVSAVLMEQGQ-MIWQQRISQATGSTEIDRLSDVDTTPVVVNGV  241 (376)
T ss_dssp             EEECCC------CCCCCCEE----ETTEEEECCTTTEEEEEETTTCC-EEEEEECCC-----------CCCCCCEEETTE
T ss_pred             EEeCCCCceee-cCCCCcEE----ECCEEEEEcCCCEEEEEECCCCc-EEEEEecccCCCCcccccccccCCCcEEECCE
Confidence            22210000000 00011122    23467778888999999987532 21111111000000000000011110 12467


Q ss_pred             EEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee-cCC
Q psy17342        235 FVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE-FRD  313 (401)
Q Consensus       235 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~  313 (401)
                      +++++.++.++.+|....+  .+....  ......+...        +..+..++.++.+..+|..+++.+..... ...
T Consensus       242 v~~~~~~g~l~~~d~~tG~--~~w~~~--~~~~~~~~~~--------~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~  309 (376)
T 3q7m_A          242 VFALAYNGNLTALDLRSGQ--IMWKRE--LGSVNDFIVD--------GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR  309 (376)
T ss_dssp             EEEECTTSCEEEEETTTCC--EEEEEC--CCCEEEEEEE--------TTEEEEEETTCCEEEEETTTCCEEEEECTTTTS
T ss_pred             EEEEecCcEEEEEECCCCc--EEeecc--CCCCCCceEE--------CCEEEEEcCCCeEEEEECCCCcEEEeecccCCC
Confidence            7888889999999987433  333322  2223333332        46677778899999999999988776652 122


Q ss_pred             ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEE
Q psy17342        314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFD  386 (401)
Q Consensus       314 ~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~  386 (401)
                      .+......  +. .++.++.+|.|..+|..+++.+....  ............  .+..|++++.+|.|+.|+
T Consensus       310 ~~~~~~~~--~~-~l~v~~~~g~l~~~d~~tG~~~~~~~--~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          310 LLTSPVLY--NG-NLVVGDSEGYLHWINVEDGRFVAQQK--VDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             CCCCCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEEE--CCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             cccCCEEE--CC-EEEEEeCCCeEEEEECCCCcEEEEEe--cCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence            22222222  23 57778889999999999987654433  211111111122  255688899999999987

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.10  E-value=2.8e-09  Score=96.25  Aligned_cols=271  Identities=8%  Similarity=-0.025  Sum_probs=168.5

Q ss_pred             CCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEE-e-CCCCceEEEE---------------
Q psy17342         75 TQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCF-A-KFNPYLILGG---------------  137 (401)
Q Consensus        75 ~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~l~~g---------------  137 (401)
                      +||+++....         ..++.|.+.|+++.+....+.+........+++ . |++..+++++               
T Consensus        99 ~DG~~lfVnd---------~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~  169 (595)
T 1fwx_A           99 YDGRFLFMND---------KANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  169 (595)
T ss_dssp             EEEEEEEEEE---------TTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             cCCCEEEEEc---------CCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence            4898988887         367889999999887766555554567889998 4 8775444442               


Q ss_pred             --ecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCc---------------EEEeeccC
Q psy17342        138 --TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR---------------LCSWSLEM  200 (401)
Q Consensus       138 --~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~---------------i~~wd~~~  200 (401)
                        -.++.+.+.|.++.+.....    ...+   .-..++.  ++++.++++++.+..               +.+.+...
T Consensus       170 ~~~~~~~vtvID~~t~~v~~qI----~Vgg---~pd~~~~--spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~  240 (595)
T 1fwx_A          170 VANYVNVFTAVDADKWEVAWQV----LVSG---NLDNCDA--DYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE  240 (595)
T ss_dssp             GGGEEEEEEEEETTTTEEEEEE----EESS---CCCCEEE--CSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred             ccccCceEEEEECCCCeEEEEE----EeCC---CccceEE--CCCCCEEEEEecCcccCcchhhccccccceEEEeeccc
Confidence              33567889998875533221    1112   2234556  788998888886642               23333211


Q ss_pred             CCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCc-eeeecCCCCceeeeecCccCCCC
Q psy17342        201 LSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGN-VECYEGHEGPVVGLSSHRAQGHI  279 (401)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~  279 (401)
                      .                       ..+. ++++....    +.|.+.|....+... +..+.. .....++.++|+    
T Consensus       241 ~-----------------------~~~v-~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPD----  287 (595)
T 1fwx_A          241 I-----------------------EKAI-AAGDYQEL----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPD----  287 (595)
T ss_dssp             H-----------------------HHHH-HHTCSEEE----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTT----
T ss_pred             e-----------------------eEec-cCCCeeEE----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCC----
Confidence            0                       0112 23444433    448999987522223 333332 234578999999    


Q ss_pred             CCCcEEEEEe-CCCeEEEEEeeCCC------------ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC-
Q psy17342        280 DFSHLYLTSS-YDWSVKLWNIKENK------------PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD-  345 (401)
Q Consensus       280 ~~~~~l~s~~-~d~~i~iwd~~~~~------------~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~-  345 (401)
                        +++++.++ .+.+|.++|+.+.+            .+.+... ......++|+|+| +.+++.-.|++|.+||+... 
T Consensus       288 --Gk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~  363 (595)
T 1fwx_A          288 --KKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAI  363 (595)
T ss_dssp             --SSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHH
T ss_pred             --CCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhh
Confidence              56555554 58899999998642            2333333 3457889999999 68888889999999999762 


Q ss_pred             ------CCCcceEEeecCCCCe-----EEEEecCCCcEEEEEec---CCc----------EEEEEeccCccceeeeeec
Q psy17342        346 ------TEVPATSAIVEGAPAL-----SRVTWTPNGTQLCVGDE---KGA----------ITMFDVGEVGIACLKFITS  400 (401)
Q Consensus       346 ------~~~~~~~~~~~~~~~v-----~~~~~s~~g~~l~~~~~---dg~----------v~iw~~~~~~~~~l~~~~~  400 (401)
                            +..+.+....-|-.+-     ..+.++|||++|+++..   |..          -.++|+..++++.+...++
T Consensus       364 ~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p~  442 (595)
T 1fwx_A          364 RAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPT  442 (595)
T ss_dssp             HHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEEE
T ss_pred             hhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEEEcC
Confidence                  1122222222221111     12345899999998753   432          1899998877777766554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.09  E-value=1.9e-08  Score=95.23  Aligned_cols=284  Identities=11%  Similarity=0.038  Sum_probs=163.2

Q ss_pred             CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-cC---CCeeE-EEEeCCCCceEEEEec------CCeEEE
Q psy17342         77 HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-CQ---SPVLS-CCFAKFNPYLILGGTY------SGQIVL  145 (401)
Q Consensus        77 ~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~---~~v~~-~~~~~~~~~~l~~g~~------dg~v~i  145 (401)
                      +..+++++          .|+.|..+|.++++.+-++... ..   ..+.+ ....  + ..++.++.      +|.|+.
T Consensus       128 ~~~v~v~~----------~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~--~-~~v~v~~~~~~~~~~g~v~a  194 (677)
T 1kb0_A          128 KGKVYVGA----------WDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF--K-GKVIIGNGGAEYGVRGYITA  194 (677)
T ss_dssp             TTEEEEEC----------TTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE--T-TEEEECCBCTTTCCBCEEEE
T ss_pred             CCEEEEEc----------CCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE--C-CEEEEEecccccCCCCEEEE
Confidence            44566666          6899999999988876555432 10   11111 1111  3 34455443      689999


Q ss_pred             EECCCCCCCceeeccccc-----------------c---------CCCCcEEEEEEeecCCceEEEEEeCCC--------
Q psy17342        146 WDTRVQKKTPVHRTPLSV-----------------M---------AHTHPVFCMSVIGTQNAHNLISISNDG--------  191 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~-----------------~---------~~~~~v~~~~~~~~~~~~~l~s~~~dg--------  191 (401)
                      +|..+++..-.....-..                 .         ........+++  .+++..++.++.++        
T Consensus       195 ~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~--d~~~~~vy~~~~~~~~w~~~~~  272 (677)
T 1kb0_A          195 YDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTF--DAELNTMYVGTGNGSPWSHKVR  272 (677)
T ss_dssp             EETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHH
T ss_pred             EECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeE--cCCCCEEEEECCCCccccCCCC
Confidence            999988764332210000                 0         11111124566  77778888877664        


Q ss_pred             -----------cEEEeeccCCCCCccccccccccc--cCCccceEEEEeccCCC---CeEEEEcCCceEEEEeCCCCCCC
Q psy17342        192 -----------RLCSWSLEMLSSPQETRDLQYNNK--QTKNLAVLSLAFPQNDV---NNFVVGCEDGNVYSACRHGNKAG  255 (401)
Q Consensus       192 -----------~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~---~~l~~~~~d~~i~~~~~~~~~~~  255 (401)
                                 .|..+|.+++. ..-.++......  .........+... .++   ..++.++.+|.++++|..+.+  
T Consensus       273 ~~~~gd~~~~~sv~AlD~~TG~-~~W~~~~~~~d~wd~~~~~~p~l~~~~-~dG~~~~~l~~~~~~G~l~~lD~~tG~--  348 (677)
T 1kb0_A          273 SPKGGDNLYLASIVALDPDTGK-YKWHYQETPGDNWDYTSTQPMILADIK-IAGKPRKVILHAPKNGFFFVLDRTNGK--  348 (677)
T ss_dssp             STTCCCCTTTTEEEEECTTTCC-EEEEEESSTTCCSCCCCCSCCEEEEEE-ETTEEEEEEEECCTTSEEEEEETTTCC--
T ss_pred             CccCCCCeeeEEEEEEECCCCC-EEEEEecCCCcccccccCCCcEEEecc-cCCcEeeEEEEECCCCEEEEEECCCCC--
Confidence                       47888877532 222222111000  0001112222222 355   678899999999999987543  


Q ss_pred             ceeeecCC-----------CCce------------------------eeeecCccCCCCCCCcEEEEEeC----------
Q psy17342        256 NVECYEGH-----------EGPV------------------------VGLSSHRAQGHIDFSHLYLTSSY----------  290 (401)
Q Consensus       256 ~~~~~~~~-----------~~~v------------------------~~i~~~~~~~~~~~~~~l~s~~~----------  290 (401)
                      .+..+...           ..++                        ..++++|.      ..++++...          
T Consensus       349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~------~~~~yv~~~~~~~~~~~~~  422 (677)
T 1kb0_A          349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ------TGLVYLPAQNVPVNLMDDK  422 (677)
T ss_dssp             EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT------TTEEEEEEEECCCEEEECT
T ss_pred             EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC------CCEEEEeChhcceeeeccc
Confidence            33322211           0011                        14566666      455555432          


Q ss_pred             ---------------------------------CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEE
Q psy17342        291 ---------------------------------DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRV  337 (401)
Q Consensus       291 ---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i  337 (401)
                                                       .+.|..||+.+++.+.++.. ..++.+..+...+. +++.++.||.+
T Consensus       423 ~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~-~v~~g~~dg~l  500 (677)
T 1kb0_A          423 KWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGN-VVFQGTADGRL  500 (677)
T ss_dssp             TCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTT-EEEEECTTSEE
T ss_pred             ccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCC-EEEEECCCCcE
Confidence                                             27899999999998888765 34445555666665 67778999999


Q ss_pred             EEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEE-ec----------------CCcEEEEEecc
Q psy17342        338 DLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVG-DE----------------KGAITMFDVGE  389 (401)
Q Consensus       338 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~----------------dg~v~iw~~~~  389 (401)
                      ++||.++++.+..+..  ++.....-+.|.++|+.+++. +.                .+.+.+|.+..
T Consensus       501 ~a~D~~tG~~lw~~~~--~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          501 VAYHAATGEKLWEAPT--GTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             EEEETTTCCEEEEEEC--SSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred             EEEECCCCceeeeeeC--CCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence            9999999997766553  332223346667888755432 22                36788888874

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.08  E-value=1.7e-08  Score=95.71  Aligned_cols=283  Identities=10%  Similarity=0.088  Sum_probs=160.9

Q ss_pred             CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCC---------Ce-eEEEEeCCCCceEEEEecCCeEEEE
Q psy17342         77 HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS---------PV-LSCCFAKFNPYLILGGTYSGQIVLW  146 (401)
Q Consensus        77 ~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~---------~v-~~~~~~~~~~~~l~~g~~dg~v~iw  146 (401)
                      +..+++++          .++.|..+|.++++.+-++......         .+ ..+...  + ..++.++.|+.|..+
T Consensus        70 ~g~vyv~~----------~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~-g~v~v~~~dg~l~Al  136 (689)
T 1yiq_A           70 DGVMYTTG----------PFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW--K-GKVYVGVLDGRLEAI  136 (689)
T ss_dssp             TTEEEEEC----------GGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--T-TEEEEECTTSEEEEE
T ss_pred             CCEEEEEc----------CCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE--C-CEEEEEccCCEEEEE
Confidence            44566666          5788999999888765444322110         00 112222  3 467778889999999


Q ss_pred             ECCCCCCCceeeccccccCCCCcEEE-EEEeecCCceEEEEEe-----CCCcEEEeeccCCCCCcccccc-ccccc----
Q psy17342        147 DTRVQKKTPVHRTPLSVMAHTHPVFC-MSVIGTQNAHNLISIS-----NDGRLCSWSLEMLSSPQETRDL-QYNNK----  215 (401)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~-----~dg~i~~wd~~~~~~~~~~~~~-~~~~~----  215 (401)
                      |..+++.......... ......+.+ -.+   .++..++..+     .+|.|..||.+++.. .-.... .....    
T Consensus       137 Da~TG~~~W~~~~~~~-~~~~~~~~~sP~v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~-~W~~~~~~~~p~~~~~  211 (689)
T 1yiq_A          137 DAKTGQRAWSVDTRAD-HKRSYTITGAPRV---VNGKVVIGNGGAEFGVRGYVTAYDAETGKE-AWRFYTVPGDPKLPPE  211 (689)
T ss_dssp             ETTTCCEEEEEECCSC-TTSCCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCE-EEEEESSCCCTTSCCC
T ss_pred             ECCCCCEeeeecCcCC-CCCCccccCCcEE---ECCEEEEEeCCCccCCCCEEEEEECCCCcE-EEEecccCCCcccccc
Confidence            9998876533321100 000011110 011   1343333322     367888888876332 111110 00000    


Q ss_pred             -----------c--------CCccceEEEEeccCCCCeEEEEcCCce-------------------EEEEeCCCCCCCce
Q psy17342        216 -----------Q--------TKNLAVLSLAFPQNDVNNFVVGCEDGN-------------------VYSACRHGNKAGNV  257 (401)
Q Consensus       216 -----------~--------~~~~~v~~~~~~~~~~~~l~~~~~d~~-------------------i~~~~~~~~~~~~~  257 (401)
                                 .        +.......++++ ++...+++++.++.                   |+.+|..+.+  .+
T Consensus       212 ~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~--~~  288 (689)
T 1yiq_A          212 GKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYD-PELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGE--YV  288 (689)
T ss_dssp             SHHHHHHHTTCCSSTHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCC--EE
T ss_pred             cccccccccccCCceeeecCCCCccccceeEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCc--ee
Confidence                       0        001111256777 67788888888764                   8889987443  44


Q ss_pred             eeecC--CCC-------ceeeeecCccCCCCCCC---cEEEEEeCCCeEEEEEeeCCCceEEEeecC-Cc----------
Q psy17342        258 ECYEG--HEG-------PVVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLWNIKENKPVHSFNEFR-DY----------  314 (401)
Q Consensus       258 ~~~~~--~~~-------~v~~i~~~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~----------  314 (401)
                      -.++.  |..       ++.-.....+      +   ..++.++.+|.++++|.++++++....... ..          
T Consensus       289 W~~~~~~~d~wd~~~~~~~~l~d~~~~------G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~  362 (689)
T 1yiq_A          289 WHYQTTPGDAWDYTATQHMILAELPID------GKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGR  362 (689)
T ss_dssp             EEEESSTTCCSCCCCCSCEEEEEEEET------TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTE
T ss_pred             EeeecCCcccccccCCCCcEEEeeccC------CcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCC
Confidence            44442  211       1111111111      2   378889999999999999999875433211 00          


Q ss_pred             ----------------------------eEEEEECCCCCcEEEEEec---------------------------------
Q psy17342        315 ----------------------------VMDVQWSPINPALFATVEV---------------------------------  333 (401)
Q Consensus       315 ----------------------------v~~v~~~~~~~~~l~~~~~---------------------------------  333 (401)
                                                  -..++++|+.. ++++...                                 
T Consensus       363 pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~  441 (689)
T 1yiq_A          363 PILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTG-LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPE  441 (689)
T ss_dssp             EEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTT-EEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCS
T ss_pred             cccchhhccccCCCCeeEeCCCcccccCCCcceECCCCC-EEEEeccccceeeeeccccccccccccccccCccccccCc
Confidence                                        11267888876 5554421                                 


Q ss_pred             ------------CCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        334 ------------AGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       334 ------------d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                                  +|.|..||+.+++.+.....    ..+...-.+...+.++++++.||.|+.||.++++
T Consensus       442 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~----~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~  507 (689)
T 1yiq_A          442 GAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY----VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGE  507 (689)
T ss_dssp             SHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccccCCCCCCCcceeEEEEECCCCCeEeEccC----CCCccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence                        37899999999886655432    2223334566678899999999999999999995

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.08  E-value=3.1e-07  Score=76.55  Aligned_cols=247  Identities=10%  Similarity=-0.010  Sum_probs=147.5

Q ss_pred             CcEEEEEeCcCCCCCc---eEEEe-cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEE
Q psy17342         96 DGVCLIWNTKFKKTTP---EFEFF-CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVF  171 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~---~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  171 (401)
                      .+.|+.++++......   ..... ....+..++|.+++..++++-..++.|..++.........      .........
T Consensus         9 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~------~~~~~~~p~   82 (267)
T 1npe_A            9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI------IRQDLGSPE   82 (267)
T ss_dssp             EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE------ECTTCCCEE
T ss_pred             CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEE------EECCCCCcc
Confidence            4688888887543211   11111 1345789999997766777766778999999976543211      112224568


Q ss_pred             EEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC---CceEEEE
Q psy17342        172 CMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE---DGNVYSA  247 (401)
Q Consensus       172 ~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~~~  247 (401)
                      .+++  .++ +..+++-...+.|.++++...  ..... ..     ........++++ +++..|+.+..   .+.|+.+
T Consensus        83 ~ia~--d~~~~~lyv~d~~~~~I~~~~~~g~--~~~~~-~~-----~~~~~P~~i~vd-~~~g~lyv~~~~~~~~~I~~~  151 (267)
T 1npe_A           83 GIAL--DHLGRTIFWTDSQLDRIEVAKMDGT--QRRVL-FD-----TGLVNPRGIVTD-PVRGNLYWTDWNRDNPKIETS  151 (267)
T ss_dssp             EEEE--ETTTTEEEEEETTTTEEEEEETTSC--SCEEE-EC-----SSCSSEEEEEEE-TTTTEEEEEECCSSSCEEEEE
T ss_pred             EEEE--EecCCeEEEEECCCCEEEEEEcCCC--CEEEE-EE-----CCCCCccEEEEe-eCCCEEEEEECCCCCcEEEEE
Confidence            8888  775 455555566778999988631  11111 11     012356889999 65555444443   4688888


Q ss_pred             eCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcE
Q psy17342        248 CRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPAL  327 (401)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~  327 (401)
                      +........+  ..........++++|+.     +.++++-...+.|.++|.........+.. ......++..  +..+
T Consensus       152 ~~dg~~~~~~--~~~~~~~P~gia~d~~~-----~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~l  221 (267)
T 1npe_A          152 HMDGTNRRIL--AQDNLGLPNGLTFDAFS-----SQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNL  221 (267)
T ss_dssp             ETTSCCCEEE--ECTTCSCEEEEEEETTT-----TEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEE
T ss_pred             ecCCCCcEEE--EECCCCCCcEEEEcCCC-----CEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEE
Confidence            8765332111  11223456789999863     45566666678999999865433333332 2344667664  3446


Q ss_pred             EEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc
Q psy17342        328 FATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT  371 (401)
Q Consensus       328 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  371 (401)
                      +++....+.|..+|..+++.+..+.  .+.......+++.|++.
T Consensus       222 yva~~~~~~v~~~d~~~g~~~~~i~--~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          222 YYTDWKTNSVIAMDLAISKEMDTFH--PHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEC--CSSCCCCCCEEEECSCC
T ss_pred             EEEECCCCeEEEEeCCCCCceEEEc--cccccccceeeecCccC
Confidence            7766677899999998876544432  12222356778877764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.05  E-value=1.3e-07  Score=83.17  Aligned_cols=273  Identities=12%  Similarity=0.035  Sum_probs=154.7

Q ss_pred             CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEec--------CCCeeEEEEeCCCCceEEEEecCCeEEEEEC
Q psy17342         77 HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC--------QSPVLSCCFAKFNPYLILGGTYSGQIVLWDT  148 (401)
Q Consensus        77 ~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~  148 (401)
                      +..+++++          .++.|..+|.++++.+-+.....        ...+.+.-.. ++ ..++.++.++.|..+|.
T Consensus        53 ~~~v~~~~----------~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~v~v~~~~g~l~a~d~  120 (376)
T 3q7m_A           53 DNVVYAAD----------RAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV-SG-GHVYIGSEKAQVYALNT  120 (376)
T ss_dssp             TTEEEEEC----------TTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE-ET-TEEEEEETTSEEEEEET
T ss_pred             CCEEEEEc----------CCCeEEEEEccCCceeeeecCccccccccccCcccccCceE-eC-CEEEEEcCCCEEEEEEC
Confidence            44677776          68899999998887654444321        1223222212 23 46667778999999999


Q ss_pred             CCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEec
Q psy17342        149 RVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFP  228 (401)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  228 (401)
                      .+++.......      ..........    .+..++.++.++.|..+|..++. ............  .......... 
T Consensus       121 ~tG~~~W~~~~------~~~~~~~p~~----~~~~v~v~~~~g~l~~~d~~tG~-~~W~~~~~~~~~--~~~~~~~~~~-  186 (376)
T 3q7m_A          121 SDGTVAWQTKV------AGEALSRPVV----SDGLVLIHTSNGQLQALNEADGA-VKWTVNLDMPSL--SLRGESAPTT-  186 (376)
T ss_dssp             TTCCEEEEEEC------SSCCCSCCEE----ETTEEEEECTTSEEEEEETTTCC-EEEEEECCC-------CCCCCCEE-
T ss_pred             CCCCEEEEEeC------CCceEcCCEE----ECCEEEEEcCCCeEEEEECCCCc-EEEEEeCCCCce--eecCCCCcEE-
Confidence            98875432221      1111111122    23467778889999999987532 221111111000  0000011111 


Q ss_pred             cCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCC--C-----ceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342        229 QNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHE--G-----PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE  301 (401)
Q Consensus       229 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~--~-----~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  301 (401)
                        .+..+++++.++.++.+|....+  .+.......  +     .+..+...|...    +..++.++.++.+..+|.++
T Consensus       187 --~~~~v~~g~~~g~l~~~d~~tG~--~~w~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~v~~~~~~g~l~~~d~~t  258 (376)
T 3q7m_A          187 --AFGAAVVGGDNGRVSAVLMEQGQ--MIWQQRISQATGSTEIDRLSDVDTTPVVV----NGVVFALAYNGNLTALDLRS  258 (376)
T ss_dssp             --ETTEEEECCTTTEEEEEETTTCC--EEEEEECCC-----------CCCCCCEEE----TTEEEEECTTSCEEEEETTT
T ss_pred             --ECCEEEEEcCCCEEEEEECCCCc--EEEEEecccCCCCcccccccccCCCcEEE----CCEEEEEecCcEEEEEECCC
Confidence              24567888889999999987433  333332111  0     011122222100    45677778899999999999


Q ss_pred             CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCc
Q psy17342        302 NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGA  381 (401)
Q Consensus       302 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~  381 (401)
                      ++.+.....  .....+...  +. .++.++.++.|..+|..+++......  ......+.....  .+..|++++.+|.
T Consensus       259 G~~~w~~~~--~~~~~~~~~--~~-~l~~~~~~g~l~~~d~~tG~~~w~~~--~~~~~~~~~~~~--~~~~l~v~~~~g~  329 (376)
T 3q7m_A          259 GQIMWKREL--GSVNDFIVD--GN-RIYLVDQNDRVMALTIDGGVTLWTQS--DLLHRLLTSPVL--YNGNLVVGDSEGY  329 (376)
T ss_dssp             CCEEEEECC--CCEEEEEEE--TT-EEEEEETTCCEEEEETTTCCEEEEEC--TTTTSCCCCCEE--ETTEEEEECTTSE
T ss_pred             CcEEeeccC--CCCCCceEE--CC-EEEEEcCCCeEEEEECCCCcEEEeec--ccCCCcccCCEE--ECCEEEEEeCCCe
Confidence            988766553  234444443  33 46667788999999999887543321  111112222222  3567888999999


Q ss_pred             EEEEEeccCcc
Q psy17342        382 ITMFDVGEVGI  392 (401)
Q Consensus       382 v~iw~~~~~~~  392 (401)
                      |+++|..++++
T Consensus       330 l~~~d~~tG~~  340 (376)
T 3q7m_A          330 LHWINVEDGRF  340 (376)
T ss_dssp             EEEEETTTCCE
T ss_pred             EEEEECCCCcE
Confidence            99999999853

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.04  E-value=1.6e-08  Score=87.13  Aligned_cols=266  Identities=12%  Similarity=0.021  Sum_probs=154.0

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      ..+.++...+++. |.+++           ++ |..+|. +++....+... ........+.  + ..+..++.++.|..
T Consensus        60 ~~~~~~~~~~~g~-l~v~t-----------~~-l~~~d~-~g~~~~~~~~~-~~~~~~~~~~--~-~~l~v~t~~~~l~~  121 (330)
T 3hxj_A           60 IIECRPSIGKDGT-IYFGS-----------DK-VYAINP-DGTEKWRFDTK-KAIVSDFTIF--E-DILYVTSMDGHLYA  121 (330)
T ss_dssp             EEEECCEETTTTE-ECCSS-----------CE-EEEECC-CGGGGGGSCC------CCEEEE--T-TEEEEECTTSEEEE
T ss_pred             CcccceEEecCCc-EEEec-----------Cc-EEEECC-CCcEEEEEECC-CCcccCceEE--C-CEEEEEecCCEEEE
Confidence            4456777777774 44444           34 888886 34433222211 1112223333  2 35667778899999


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEE
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL  225 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (401)
                      +|.. ++....      ...+...+.++..  .+++. +..++.++.|..+|..  +........       ....+.++
T Consensus       122 ~d~~-g~~~~~------~~~~~~~~~~~~~--~~~g~-l~vgt~~~~l~~~d~~--g~~~~~~~~-------~~~~~~~~  182 (330)
T 3hxj_A          122 INTD-GTEKWR------FKTKKAIYATPIV--SEDGT-IYVGSNDNYLYAINPD--GTEKWRFKT-------NDAITSAA  182 (330)
T ss_dssp             ECTT-SCEEEE------EECSSCCCSCCEE--CTTSC-EEEECTTSEEEEECTT--SCEEEEEEC-------SSCCCSCC
T ss_pred             EcCC-CCEEEE------EcCCCceeeeeEE--cCCCE-EEEEcCCCEEEEECCC--CCEeEEEec-------CCCceeee
Confidence            9987 443211      1223333444554  44554 6667788899999876  222222111       12234555


Q ss_pred             EeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCce
Q psy17342        226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPV  305 (401)
Q Consensus       226 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  305 (401)
                      ... .++. +.+++  +.++.+|..   ......+......+.++...++      + .+..++.++.+..+|. +++.+
T Consensus       183 ~~d-~~g~-l~v~t--~~l~~~d~~---g~~~~~~~~~~~~~~~~~~~~~------g-~l~v~t~~~gl~~~~~-~g~~~  247 (330)
T 3hxj_A          183 SIG-KDGT-IYFGS--DKVYAINPD---GTEKWNFYAGYWTVTRPAISED------G-TIYVTSLDGHLYAINP-DGTEK  247 (330)
T ss_dssp             EEC-TTCC-EEEES--SSEEEECTT---SCEEEEECCSSCCCSCCEECTT------S-CEEEEETTTEEEEECT-TSCEE
T ss_pred             EEc-CCCE-EEEEe--CEEEEECCC---CcEEEEEccCCcceeceEECCC------C-eEEEEcCCCeEEEECC-CCCEe
Confidence            555 4444 55566  788888832   2234444444556777777765      3 4555666788888874 56666


Q ss_pred             EEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEE
Q psy17342        306 HSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMF  385 (401)
Q Consensus       306 ~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw  385 (401)
                      ..+......+..+...+++.  +..++.+|.|..+|. +++....+.   .....+.++...++|. |..++.+|.+++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~g~--l~v~t~~ggl~~~d~-~g~~~~~~~---~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~  320 (330)
T 3hxj_A          248 WRFKTGKRIESSPVIGNTDT--IYFGSYDGHLYAINP-DGTEKWNFE---TGSWIIATPVIDENGT-IYFGTRNGKFYAL  320 (330)
T ss_dssp             EEEECSSCCCSCCEECTTSC--EEEECTTCEEEEECT-TSCEEEEEE---CSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred             EEeeCCCCccccceEcCCCe--EEEecCCCCEEEECC-CCcEEEEEE---cCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence            66665444445566666774  566777889999995 454433322   2244566777777776 5668899999988


Q ss_pred             EeccC
Q psy17342        386 DVGEV  390 (401)
Q Consensus       386 ~~~~~  390 (401)
                      ..+..
T Consensus       321 ~~~~~  325 (330)
T 3hxj_A          321 FNLEH  325 (330)
T ss_dssp             EC---
T ss_pred             ecccc
Confidence            87654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.99  E-value=7.8e-08  Score=83.97  Aligned_cols=212  Identities=10%  Similarity=0.146  Sum_probs=127.6

Q ss_pred             CCceEEE-EEeCCCcEEEeeccCC-CCCccccccccccc--cCCccceEEEEeccCCCCeEEEEcCC------ceEEEEe
Q psy17342        179 QNAHNLI-SISNDGRLCSWSLEML-SSPQETRDLQYNNK--QTKNLAVLSLAFPQNDVNNFVVGCED------GNVYSAC  248 (401)
Q Consensus       179 ~~~~~l~-s~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~~~~  248 (401)
                      .++++|+ ++-.+++|.++|+.+. ..+.....+.....  .........+... +++ +++++..+      +.|.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~-pdG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCG-PDA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEEC-SSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeEC-CCe-EEEEcCCCcCCCCCCeEEEEE
Confidence            4555554 5556789999998642 22222211110000  0011234556677 677 66655444      6899999


Q ss_pred             CCCCCCCceeeecCCCC---ceeeeecCccCCCCCCCcEEEEEe-------------------CCCeEEEEEeeCCCceE
Q psy17342        249 RHGNKAGNVECYEGHEG---PVVGLSSHRAQGHIDFSHLYLTSS-------------------YDWSVKLWNIKENKPVH  306 (401)
Q Consensus       249 ~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~~~~~~l~s~~-------------------~d~~i~iwd~~~~~~~~  306 (401)
                      ..+.  +.+..+.....   .-+.+-|+|+      ++.+++..                   .+.+|.+||+.+++.+.
T Consensus       171 ~~T~--~v~~~~~~~~~~~~~~Yd~~~~p~------~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~  242 (462)
T 2ece_A          171 HYSF--EPLGKWEIDRGDQYLAYDFWWNLP------NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH  242 (462)
T ss_dssp             TTTC--CEEEECCSBCTTCCCCCCEEEETT------TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred             CCCC--eEEEEEccCCCCccccceEEECCC------CCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence            8743  35555542222   2345777888      67888774                   36899999999888888


Q ss_pred             EEeec-C-CceEEEEE--CCCCCcEEEEEe-----cCCEEEEEeCCCCCCCcceEEeecC-----------------CCC
Q psy17342        307 SFNEF-R-DYVMDVQW--SPINPALFATVE-----VAGRVDLWNLNLDTEVPATSAIVEG-----------------APA  360 (401)
Q Consensus       307 ~~~~~-~-~~v~~v~~--~~~~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~-----------------~~~  360 (401)
                      ++... . .....+.|  +|+++..++++-     .+++|.+|....+............                 ...
T Consensus       243 tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~  322 (462)
T 2ece_A          243 SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL  322 (462)
T ss_dssp             EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred             EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence            87752 1 23445555  999986666666     6778887766542211000000000                 234


Q ss_pred             eEEEEecCCCcEEEEEec-CCcEEEEEecc-Cccceeeeeec
Q psy17342        361 LSRVTWTPNGTQLCVGDE-KGAITMFDVGE-VGIACLKFITS  400 (401)
Q Consensus       361 v~~~~~s~~g~~l~~~~~-dg~v~iw~~~~-~~~~~l~~~~~  400 (401)
                      ...+.+|+||++|.++.. .+.|.+||+.+ +..+.+..++.
T Consensus       323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t  364 (462)
T 2ece_A          323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL  364 (462)
T ss_dssp             CCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred             eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe
Confidence            678999999999987764 67899999963 33455555544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.98  E-value=4.7e-10  Score=98.30  Aligned_cols=202  Identities=11%  Similarity=0.049  Sum_probs=107.7

Q ss_pred             ceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccc
Q psy17342        132 YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQ  211 (401)
Q Consensus       132 ~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~  211 (401)
                      ..+++++.||.|..||..+++......      .  +.+.+..+  ..++..+++++.||.|..||..++.. .......
T Consensus        10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~------~--~~~~s~p~--~~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~   78 (369)
T 2hz6_A           10 TLLFVSTLDGSLHAVSKRTGSIKWTLK------E--DPVLQVPT--HVEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFT   78 (369)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEE------C--CCSCCCC-------CCEEECTTTCCEEEC-----CC-SEECSCC
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEec------C--CCceecce--EcCCCEEEEeCCCCEEEEEECCCCce-eeeeecc
Confidence            578888899999999999887653321      1  23333333  35666788888999999999875332 1111111


Q ss_pred             cccccCCccceE-EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC
Q psy17342        212 YNNKQTKNLAVL-SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY  290 (401)
Q Consensus       212 ~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~  290 (401)
                      .      ...+. +..+  ..+..+++++.++.++.||..+.+  .+..+..+.    ...++|.      +..+++++.
T Consensus        79 ~------~~~~~~sp~~--~~~~~v~~g~~dg~v~a~D~~tG~--~~w~~~~~~----~~~~~p~------~~~v~~~~~  138 (369)
T 2hz6_A           79 I------PELVQASPCR--SSDGILYMGKKQDIWYVIDLLTGE--KQQTLSSAF----ADSLSPS------TSLLYLGRT  138 (369)
T ss_dssp             H------HHHHTTCSCC-------CCCCEEEEEEEEECCC----------------------------------EEEEEE
T ss_pred             C------ccccccCceE--ecCCEEEEEeCCCEEEEEECCCCc--EEEEecCCC----ccccccc------CCEEEEEec
Confidence            0      00110 0011  134567788889999999987443  344444332    2344554      678888888


Q ss_pred             CCeEEEEEeeCCCceEEEeecCCceEEEEECCCC---CcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCe-EEEEe
Q psy17342        291 DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPIN---PALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPAL-SRVTW  366 (401)
Q Consensus       291 d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v-~~~~~  366 (401)
                      |+.|+.||.++++.+..+..+.  .....+.++.   . .+++++.||.|+.||.++++.+....    ...++ ....+
T Consensus       139 dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~-~v~~~~~dg~v~a~d~~tG~~~W~~~----~~~pv~~~~~~  211 (369)
T 2hz6_A          139 EYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKM-SHFVSNGDGLVVTVDSESGDVLWIQN----YASPVVAFYVW  211 (369)
T ss_dssp             EEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCC-CEEEEETSCEEEEECTTTCCEEEEEE----CSSCEEEEEEC
T ss_pred             CCEEEEEECCCCCEEEeEeccc--ccCccccCCccccc-eEEEECCCCEEEEEECCCCcEEEEec----CCCceEEEEEe
Confidence            9999999999999887765422  2233344431   3 35667889999999999987654432    23333 33455


Q ss_pred             cCCCc
Q psy17342        367 TPNGT  371 (401)
Q Consensus       367 s~~g~  371 (401)
                      +++|.
T Consensus       212 ~~dg~  216 (369)
T 2hz6_A          212 QREGL  216 (369)
T ss_dssp             TTSSC
T ss_pred             cCCce
Confidence            56664

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.98  E-value=3.3e-08  Score=93.77  Aligned_cols=80  Identities=14%  Similarity=0.136  Sum_probs=57.0

Q ss_pred             CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC
Q psy17342        291 DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG  370 (401)
Q Consensus       291 d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  370 (401)
                      +|.|+.||+.+++.+.++..+. ++..-.+...+. +++.++.||.|+.||.++++.+..+..  ++.....-+.|..+|
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagg-lvf~gt~dg~l~a~D~~tG~~lw~~~~--~~~~~~~p~ty~~~G  529 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGN-LVFEGSADGRVIAYAADTGEKLWEQPA--ASGVMAAPVTYSVDG  529 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEEC--SSCCCSCCEEEEETT
T ss_pred             ceeEEEEECCCCCeEeEccCCC-CccCccceECCC-EEEEECCCCcEEEEECCCCccceeeeC--CCCcccCceEEEECC
Confidence            3789999999999988887644 333334555565 788889999999999999997766543  322222336677888


Q ss_pred             cEEE
Q psy17342        371 TQLC  374 (401)
Q Consensus       371 ~~l~  374 (401)
                      +..+
T Consensus       530 ~qyv  533 (689)
T 1yiq_A          530 EQYV  533 (689)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.93  E-value=3.7e-06  Score=69.93  Aligned_cols=233  Identities=9%  Similarity=0.020  Sum_probs=135.5

Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCc-eEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNA-HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                      +.|+.++++..........+. +.........++|  .+++ ..+++-..++.|..+++.... ....  ..     ...
T Consensus        10 ~~I~~~~~~g~~~~~~~~~~~-~~~~~~~~~gi~~--d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~--~~-----~~~   78 (267)
T 1npe_A           10 GKIERLPLERNTMKKTEAKAF-LHIPAKVIIGLAF--DCVDKVVYWTDISEPSIGRASLHGGE-PTTI--IR-----QDL   78 (267)
T ss_dssp             EEEEEEEESSSCBCGGGCEEE-EEEEEEEEEEEEE--ETTTTEEEEEETTTTEEEEEESSSCC-CEEE--EC-----TTC
T ss_pred             CeEEEEEecCcccccccceee-ecCCCCcEEEEEE--ecCCCEEEEEECCCCEEEEEecCCCC-cEEE--EE-----CCC
Confidence            578888887654321000000 1111235678888  7754 455555567889999986421 1111  10     122


Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC--CCeEEEE
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY--DWSVKLW  297 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~--d~~i~iw  297 (401)
                      .....++++|..+..+++-...+.|.+++..+....  ............++++|..     +.++++...  .+.|..+
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~--~~~~~~~~~P~~i~vd~~~-----g~lyv~~~~~~~~~I~~~  151 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR--VLFDTGLVNPRGIVTDPVR-----GNLYWTDWNRDNPKIETS  151 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEECSSCSSEEEEEEETTT-----TEEEEEECCSSSCEEEEE
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE--EEEECCCCCccEEEEeeCC-----CEEEEEECCCCCcEEEEE
Confidence            467889999334455556666789999998754321  1122222456789999863     455555433  3688888


Q ss_pred             EeeCCCceEEEe-ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEE
Q psy17342        298 NIKENKPVHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVG  376 (401)
Q Consensus       298 d~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  376 (401)
                      ++. ++....+. ..-.....++++|++..++++-...+.|..+|+........    .........++.. .+..+++.
T Consensus       152 ~~d-g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~----~~~~~~P~gi~~d-~~~lyva~  225 (267)
T 1npe_A          152 HMD-GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV----LEGLQYPFAVTSY-GKNLYYTD  225 (267)
T ss_dssp             ETT-SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE----EECCCSEEEEEEE-TTEEEEEE
T ss_pred             ecC-CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE----ecCCCCceEEEEe-CCEEEEEE
Confidence            875 33333332 22345789999998776777777788999999975332111    1222334566654 34444444


Q ss_pred             ecCCcEEEEEeccCccceeeeee
Q psy17342        377 DEKGAITMFDVGEVGIACLKFIT  399 (401)
Q Consensus       377 ~~dg~v~iw~~~~~~~~~l~~~~  399 (401)
                      ...+.|.++|..++  +.++.++
T Consensus       226 ~~~~~v~~~d~~~g--~~~~~i~  246 (267)
T 1npe_A          226 WKTNSVIAMDLAIS--KEMDTFH  246 (267)
T ss_dssp             TTTTEEEEEETTTT--EEEEEEC
T ss_pred             CCCCeEEEEeCCCC--CceEEEc
Confidence            45688999999887  3445443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.91  E-value=1.3e-08  Score=87.72  Aligned_cols=260  Identities=13%  Similarity=0.030  Sum_probs=147.3

Q ss_pred             EEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC
Q psy17342         71 MDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV  150 (401)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~  150 (401)
                      .....++ .+.+++          .++.|..|| .+++....... ....+.++...+++  .+..++.+  |..+|. +
T Consensus        25 ~~~d~~g-~l~v~t----------~~~~l~~~d-~~g~~~~~~~~-~~~~~~~~~~~~~g--~l~v~t~~--l~~~d~-~   86 (330)
T 3hxj_A           25 PILAKNG-TIYLGS----------SNKNLYAIN-TDGSVKWFFKS-GEIIECRPSIGKDG--TIYFGSDK--VYAINP-D   86 (330)
T ss_dssp             CEECTTS-CEECSS----------TTTTTEEEC-TTSCEEESSCG-GGEEEECCEETTTT--EECCSSCE--EEEECC-C
T ss_pred             ceEccCC-eEEEEc----------CCCEEEEEC-CCCcEEEEEec-CCCcccceEEecCC--cEEEecCc--EEEECC-C
Confidence            3444455 455555          577888888 65553322111 12234566665544  45555544  888875 3


Q ss_pred             CCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccC
Q psy17342        151 QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQN  230 (401)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  230 (401)
                      ++...      .............+  .  +..+..++.++.|..+|..  +........       ....+.++... +
T Consensus        87 g~~~~------~~~~~~~~~~~~~~--~--~~~l~v~t~~~~l~~~d~~--g~~~~~~~~-------~~~~~~~~~~~-~  146 (330)
T 3hxj_A           87 GTEKW------RFDTKKAIVSDFTI--F--EDILYVTSMDGHLYAINTD--GTEKWRFKT-------KKAIYATPIVS-E  146 (330)
T ss_dssp             GGGGG------GSCC-----CCEEE--E--TTEEEEECTTSEEEEECTT--SCEEEEEEC-------SSCCCSCCEEC-T
T ss_pred             CcEEE------EEECCCCcccCceE--E--CCEEEEEecCCEEEEEcCC--CCEEEEEcC-------CCceeeeeEEc-C
Confidence            33221      11112222223333  2  4567778888999999876  222111111       12233444444 3


Q ss_pred             CCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee
Q psy17342        231 DVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE  310 (401)
Q Consensus       231 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  310 (401)
                      + ..+++++.++.++.+|.. ..  ....+......+.++...++      +.++ .++  +.|..+| .+++.+..+..
T Consensus       147 ~-g~l~vgt~~~~l~~~d~~-g~--~~~~~~~~~~~~~~~~~d~~------g~l~-v~t--~~l~~~d-~~g~~~~~~~~  212 (330)
T 3hxj_A          147 D-GTIYVGSNDNYLYAINPD-GT--EKWRFKTNDAITSAASIGKD------GTIY-FGS--DKVYAIN-PDGTEKWNFYA  212 (330)
T ss_dssp             T-SCEEEECTTSEEEEECTT-SC--EEEEEECSSCCCSCCEECTT------CCEE-EES--SSEEEEC-TTSCEEEEECC
T ss_pred             C-CEEEEEcCCCEEEEECCC-CC--EeEEEecCCCceeeeEEcCC------CEEE-EEe--CEEEEEC-CCCcEEEEEcc
Confidence            4 457778888999999986 22  34444444455666666554      4444 444  7899999 77777777666


Q ss_pred             cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        311 FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       311 ~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      ....+.++...+++.  +..++.++.|..+|. ++.....+.   .....+..+...+++ .|..++.+|.|..+|. ++
T Consensus       213 ~~~~~~~~~~~~~g~--l~v~t~~~gl~~~~~-~g~~~~~~~---~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g  284 (330)
T 3hxj_A          213 GYWTVTRPAISEDGT--IYVTSLDGHLYAINP-DGTEKWRFK---TGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DG  284 (330)
T ss_dssp             SSCCCSCCEECTTSC--EEEEETTTEEEEECT-TSCEEEEEE---CSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TS
T ss_pred             CCcceeceEECCCCe--EEEEcCCCeEEEECC-CCCEeEEee---CCCCccccceEcCCC-eEEEecCCCCEEEECC-CC
Confidence            556688888898885  455666788888874 344332222   222233445555555 4667888888999985 44

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.87  E-value=3e-07  Score=83.18  Aligned_cols=194  Identities=8%  Similarity=-0.001  Sum_probs=126.0

Q ss_pred             CCceEEEEEeC-CCcEEEeeccCCCCCccccccccccccCCccceEEEEecc-CCCCeEEEEc-----------------
Q psy17342        179 QNAHNLISISN-DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQ-NDVNNFVVGC-----------------  239 (401)
Q Consensus       179 ~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~-----------------  239 (401)
                      ++|++++.... +++|.+.|+.+.. ....++++      ....+..+++.. |++.++++++                 
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~-~~~ii~ip------~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~  171 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMK-CDAILEIP------NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVA  171 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTE-EEEEEECS------SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCce-EeeEEeCC------CCCCCcceeeeecCCCcEEEEecccccccCCCCccccccc
Confidence            36777766655 5569999998632 22222332      223566777754 6788887774                 


Q ss_pred             -CCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC--------------------------
Q psy17342        240 -EDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW--------------------------  292 (401)
Q Consensus       240 -~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~--------------------------  292 (401)
                       .++.+.+.|....  +...++.--. ....++++|+      +.++++.+.+.                          
T Consensus       172 ~~~~~vtvID~~t~--~v~~qI~Vgg-~pd~~~~spd------Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~  242 (595)
T 1fwx_A          172 NYVNVFTAVDADKW--EVAWQVLVSG-NLDNCDADYE------GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE  242 (595)
T ss_dssp             GEEEEEEEEETTTT--EEEEEEEESS-CCCCEEECSS------SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred             ccCceEEEEECCCC--eEEEEEEeCC-CccceEECCC------CCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence             3456788888743  3344433211 3356677777      56766666442                          


Q ss_pred             ------------eEEEEEeeC--CCc-eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC--------Cc
Q psy17342        293 ------------SVKLWNIKE--NKP-VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE--------VP  349 (401)
Q Consensus       293 ------------~i~iwd~~~--~~~-~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~  349 (401)
                                  .|.+.|.++  ++. +..+.. .....++.++|||+++++++..+.+|.++|+.+.+.        ..
T Consensus       243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~  321 (595)
T 1fwx_A          243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS  321 (595)
T ss_dssp             HHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred             EeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence                        477777776  444 455654 345678999999998888888899999999986421        01


Q ss_pred             ceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        350 ATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       350 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      .......-......++|+|+|...++..-|+.|.+||+.+
T Consensus       322 ~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          322 AVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             GEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            1111223345678999999995555667899999999987

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.86  E-value=2e-07  Score=88.14  Aligned_cols=282  Identities=11%  Similarity=0.071  Sum_probs=155.7

Q ss_pred             CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCC---------Ce-eEEEEeCCCCceEEEEecCCeEEEE
Q psy17342         77 HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQS---------PV-LSCCFAKFNPYLILGGTYSGQIVLW  146 (401)
Q Consensus        77 ~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~---------~v-~~~~~~~~~~~~l~~g~~dg~v~iw  146 (401)
                      +..+++++          .++.|..+|.++++.+-++......         .+ ..+++.  + ..++.++.++.|..+
T Consensus        66 ~g~vyv~~----------~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~v~v~~~dg~l~al  132 (668)
T 1kv9_A           66 DGVIYTSM----------SWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--G-DKVYVGTLDGRLIAL  132 (668)
T ss_dssp             TTEEEEEE----------GGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--B-TEEEEECTTSEEEEE
T ss_pred             CCEEEEEC----------CCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE--C-CEEEEEcCCCEEEEE
Confidence            34566666          5889999999888765443322110         00 112332  3 366777789999999


Q ss_pred             ECCCCCCCceeeccccccCCCCcEEE-EEEeecCCceEEEEEeC------CCcEEEeeccCCCCCcccccccc-ccc---
Q psy17342        147 DTRVQKKTPVHRTPLSVMAHTHPVFC-MSVIGTQNAHNLISISN------DGRLCSWSLEMLSSPQETRDLQY-NNK---  215 (401)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~------dg~i~~wd~~~~~~~~~~~~~~~-~~~---  215 (401)
                      |..+++........-  ......+.+ ..+   .++ .++.+..      +|.|..+|.+++.. .-...... ...   
T Consensus       133 D~~tG~~~W~~~~~~--~~~~~~~~~~P~v---~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~-~W~~~~~~~~p~~~~  205 (668)
T 1kv9_A          133 DAKTGKAIWSQQTTD--PAKPYSITGAPRV---VKG-KVIIGNGGAEYGVRGFVSAYDADTGKL-AWRFYTVPGDPALPY  205 (668)
T ss_dssp             ETTTCCEEEEEECSC--TTSSCBCCSCCEE---ETT-EEEECCBCTTTCCBCEEEEEETTTCCE-EEEEESSCCCTTSCC
T ss_pred             ECCCCCEeeeeccCC--CCCcceecCCCEE---ECC-EEEEeCCCCCcCCCCEEEEEECCCCcE-EEEecccCCCCCccc
Confidence            999887653322100  000001110 011   133 3444332      57888888876321 11111100 000   


Q ss_pred             ------------c--------CCccceEEEEeccCCCCeEEEEcCCce-------------------EEEEeCCCCCCCc
Q psy17342        216 ------------Q--------TKNLAVLSLAFPQNDVNNFVVGCEDGN-------------------VYSACRHGNKAGN  256 (401)
Q Consensus       216 ------------~--------~~~~~v~~~~~~~~~~~~l~~~~~d~~-------------------i~~~~~~~~~~~~  256 (401)
                                  .        ........+++. ++...+++++.++.                   |+.+|..+.+  .
T Consensus       206 ~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~--~  282 (668)
T 1kv9_A          206 EHPELREAAKTWQGDQYWKLGGGGTVWDSMAYD-PELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGK--L  282 (668)
T ss_dssp             SSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC--E
T ss_pred             cccccccccccCCccceeeeCCCCccccceEEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCc--e
Confidence                        0        001111246777 66778888887764                   8888887443  3


Q ss_pred             eeeecC--CC-------CceeeeecCccCCCCCCC---cEEEEEeCCCeEEEEEeeCCCceEEEeecC------------
Q psy17342        257 VECYEG--HE-------GPVVGLSSHRAQGHIDFS---HLYLTSSYDWSVKLWNIKENKPVHSFNEFR------------  312 (401)
Q Consensus       257 ~~~~~~--~~-------~~v~~i~~~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------  312 (401)
                      +-.++.  |.       .+.....+..+      +   ..++.++.+|.++++|..+++.+.......            
T Consensus       283 ~W~~~~~~~~~wd~~~~~~~~~~d~~~~------G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g  356 (668)
T 1kv9_A          283 AWHYQVTPGDSWDFTATQQITLAELNID------GKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG  356 (668)
T ss_dssp             EEEEESSTTCCSCCCCCSCEEEEEEEET------TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred             eeEeecCCCccccccCCCCcEEEEeccC------CcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccC
Confidence            444432  22       11111111112      3   368888999999999999999875443211            


Q ss_pred             Cce------------------------EEEEECCCCCcEEEEE-----------------------------------ec
Q psy17342        313 DYV------------------------MDVQWSPINPALFATV-----------------------------------EV  333 (401)
Q Consensus       313 ~~v------------------------~~v~~~~~~~~~l~~~-----------------------------------~~  333 (401)
                      .++                        ..++++|+...+++..                                   ..
T Consensus       357 ~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~  436 (668)
T 1kv9_A          357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV  436 (668)
T ss_dssp             CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred             CccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCc
Confidence            000                        1256777765333211                                   12


Q ss_pred             CCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        334 AGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       334 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      +|.|..||+.+++.+.....    ........+...+.++++++.||.|+.||.++++
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~----~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~  490 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPY----PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE  490 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cceEEEEeCCCCcEEEEccC----CCCCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence            47899999999886655432    2223333445578889999999999999999985

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.86  E-value=5.4e-06  Score=80.43  Aligned_cols=287  Identities=12%  Similarity=0.115  Sum_probs=170.3

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-------cCCCeeEEEEeCCCCceEEEE
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-------CQSPVLSCCFAKFNPYLILGG  137 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~g  137 (401)
                      ...|.++...++| .|..|+          .+ -|.+|+..++... .+...       ....|.++...+++  .|..|
T Consensus       262 ~~~i~~i~~d~~g-~lWigt----------~~-Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWig  326 (795)
T 4a2l_A          262 SNYIRSLAMDSQN-RLWIGT----------FN-DLNIYHEGTDSFA-SYSSNPVENGSLSQRSVRSIFMDSQG--GMWLG  326 (795)
T ss_dssp             CSBEEEEEECTTS-CEEEEE----------SS-CEEEEETTTTEEE-EECCCTTSTTSCSSSCEEEEEECTTS--CEEEE
T ss_pred             CCeEEEEEEcCCC-CEEEEe----------CC-hhheEcCCCCeEE-EEecCCCCCCCCCCCcEEEEEEeCCc--CEEEE
Confidence            3669999998888 466677          34 5888887754321 11100       13579999888766  35556


Q ss_pred             ecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccc-ccc-
Q psy17342        138 TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY-NNK-  215 (401)
Q Consensus       138 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~-  215 (401)
                      +.++-|..|+.................-....|.++..  .+++. |..|+.++-|..|+.....  ........ ... 
T Consensus       327 t~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~--d~~g~-lWiGt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~  401 (795)
T 4a2l_A          327 TYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVE--DKDKN-LWIGTNDGGLNLYNPITQR--FTSYTLQEDESAR  401 (795)
T ss_dssp             ESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEE--CTTSC-EEEEESSSCEEEECTTTCC--EEEECCC------
T ss_pred             ECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEE--CCCCC-EEEEECCCCeEEEcCCCCc--EEEEecCCCCccc
Confidence            67777999987655432111110001113456899887  66665 5567777789999876411  11111000 000 


Q ss_pred             cCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec-----CCCCceeeeecCccCCCCCCCcEEEEEeC
Q psy17342        216 QTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE-----GHEGPVVGLSSHRAQGHIDFSHLYLTSSY  290 (401)
Q Consensus       216 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~-----~~~~~v~~i~~~~~~~~~~~~~~l~s~~~  290 (401)
                      ......|.++... +++..|.+|+.++-+..++.....   ...+.     .....|.++...+.      +.+.+ |+.
T Consensus       402 ~l~~~~v~~i~~d-~~g~~lWigt~~~Gl~~~d~~~~~---~~~~~~~~~~l~~~~v~~i~~d~~------g~lwi-gt~  470 (795)
T 4a2l_A          402 GIGSNNIKAVYVD-EKKSLVYIGTHAGGLSILHRNSGQ---VENFNQRNSQLVNENVYAILPDGE------GNLWL-GTL  470 (795)
T ss_dssp             CCSCSCEEEEEEE-TTTTEEEEEETTTEEEEEETTTCC---EEEECTTTSCCSCSCEEEEEECSS------SCEEE-EES
T ss_pred             CCCCccEEEEEEc-CCCCEEEEEeCcCceeEEeCCCCc---EEEeecCCCCcCCCeeEEEEECCC------CCEEE-Eec
Confidence            0123568899887 566647788887789999876432   22222     12456888887765      45444 444


Q ss_pred             CCeEEEEEeeCCCceEEEee-------cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEE----eecCCC
Q psy17342        291 DWSVKLWNIKENKPVHSFNE-------FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSA----IVEGAP  359 (401)
Q Consensus       291 d~~i~iwd~~~~~~~~~~~~-------~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~  359 (401)
                       +-+.+||..+++.. .+..       ....|.++...++|. +.+ |+. +-|..||..+...  .+..    ......
T Consensus       471 -~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~-lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~  543 (795)
T 4a2l_A          471 -SALVRFNPEQRSFT-TIEKEKDGTPVVSKQITTLFRDSHKR-LWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKL  543 (795)
T ss_dssp             -SCEEEEETTTTEEE-ECCBCTTCCBCCCCCEEEEEECTTCC-EEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGS
T ss_pred             -CceeEEeCCCCeEE-EccccccccccCCceEEEEEECCCCC-EEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCC
Confidence             45888887665432 2221       235789999999986 444 334 4588888776432  1110    001234


Q ss_pred             CeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        360 ALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       360 ~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      .|.++...++|.+.++ +..| |..||..+++
T Consensus       544 ~i~~i~~d~~g~lWig-T~~G-l~~~d~~~~~  573 (795)
T 4a2l_A          544 FTNCIYEASNGIIWVG-TREG-FYCFNEKDKQ  573 (795)
T ss_dssp             CEEEEEECTTSCEEEE-ESSC-EEEEETTTTE
T ss_pred             eeEEEEECCCCCEEEE-eCCC-ceeECCCCCc
Confidence            6889999999886554 4444 8888877654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.85  E-value=6.1e-06  Score=80.06  Aligned_cols=290  Identities=9%  Similarity=0.012  Sum_probs=168.7

Q ss_pred             eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEE
Q psy17342         68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWD  147 (401)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~  147 (401)
                      |.++...+++. |.+++          .++.|..|+.++++............|.++...+++ . +..|+.++-|..||
T Consensus       175 i~~i~~d~~g~-lwigt----------~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~-lwigt~~~Gl~~~~  241 (795)
T 4a2l_A          175 IASTLYRQGDQ-IYIGT----------STDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPT-R-IWVATEGAGLFLIN  241 (795)
T ss_dssp             CEEEEEEETTE-EEEEE----------SSSCEEEEETTTCCEEECC----CCCEEEEEEEETT-E-EEEEEBSSCEEEEE
T ss_pred             eEEEEECCCCC-EEEEE----------CCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCC-C-EEEEECCCCeEEEe
Confidence            88888888774 55566          355688899875543211111124578888887755 3 44455554588999


Q ss_pred             CCCCCCCceeeccc-cccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccc-ccccCCccceEEE
Q psy17342        148 TRVQKKTPVHRTPL-SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY-NNKQTKNLAVLSL  225 (401)
Q Consensus       148 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~  225 (401)
                      ..+.+......... ........|.++..  .+++.+.+ |+.+ -|.+|+.....  ........ .........|.++
T Consensus       242 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~--d~~g~lWi-gt~~-Gl~~~~~~~~~--~~~~~~~~~~~~~l~~~~i~~i  315 (795)
T 4a2l_A          242 PKTKEIKNYLHSPSNPKSISSNYIRSLAM--DSQNRLWI-GTFN-DLNIYHEGTDS--FASYSSNPVENGSLSQRSVRSI  315 (795)
T ss_dssp             TTTTEEEEECCCTTCTTSCSCSBEEEEEE--CTTSCEEE-EESS-CEEEEETTTTE--EEEECCCTTSTTSCSSSCEEEE
T ss_pred             CCCCeEEEeecCCCCccccCCCeEEEEEE--cCCCCEEE-EeCC-hhheEcCCCCe--EEEEecCCCCCCCCCCCcEEEE
Confidence            87654321111000 00112457899887  66666444 4445 58888865311  11110000 0011134578999


Q ss_pred             EeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC-------CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG-------HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       226 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      ... +++ .|.+|+.++-|..++.....   ...+..       ....|.++...++      +. |..|+.++-|..||
T Consensus       316 ~~D-~~g-~lWigt~~~Gl~~~~~~~~~---~~~~~~~~~~~~l~~~~V~~i~~d~~------g~-lWiGt~~~Gl~~~~  383 (795)
T 4a2l_A          316 FMD-SQG-GMWLGTYFGGLNYYHPIRNR---FKNIRNIPYKNSLSDNVVSCIVEDKD------KN-LWIGTNDGGLNLYN  383 (795)
T ss_dssp             EEC-TTS-CEEEEESSSCEEEECGGGGS---SEEECCCTTSSSCSCSSEEEEEECTT------SC-EEEEESSSCEEEEC
T ss_pred             EEe-CCc-CEEEEECCCCeEEeCCCccc---ceEEcCCCCCCCCCCCeeEEEEECCC------CC-EEEEECCCCeEEEc
Confidence            887 444 56778887888888765332   112211       2345888887765      44 55577777899999


Q ss_pred             eeCCCceEEEe--------ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe--ecCCCCeEEEEecC
Q psy17342        299 IKENKPVHSFN--------EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAI--VEGAPALSRVTWTP  368 (401)
Q Consensus       299 ~~~~~~~~~~~--------~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~s~  368 (401)
                      ..+++......        .....|.++...+++. +|..|+.++-|..||..+++.. .+...  ......|.++...+
T Consensus       384 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~  461 (795)
T 4a2l_A          384 PITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKS-LVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDG  461 (795)
T ss_dssp             TTTCCEEEECCC------CCSCSCEEEEEEETTTT-EEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECS
T ss_pred             CCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCC-EEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECC
Confidence            87654322211        1135689999888885 4666777778999998875421 11100  01235689999988


Q ss_pred             CCcEEEEEecCCcEEEEEeccCcc
Q psy17342        369 NGTQLCVGDEKGAITMFDVGEVGI  392 (401)
Q Consensus       369 ~g~~l~~~~~dg~v~iw~~~~~~~  392 (401)
                      +|.+.+. +.+| |.+|+..+++.
T Consensus       462 ~g~lwig-t~~G-l~~~~~~~~~~  483 (795)
T 4a2l_A          462 EGNLWLG-TLSA-LVRFNPEQRSF  483 (795)
T ss_dssp             SSCEEEE-ESSC-EEEEETTTTEE
T ss_pred             CCCEEEE-ecCc-eeEEeCCCCeE
Confidence            8886554 4455 88999877643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.76  E-value=3.6e-06  Score=68.96  Aligned_cols=198  Identities=11%  Similarity=-0.006  Sum_probs=129.4

Q ss_pred             CeeEEEEeCCCCceEEEEec--CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342        120 PVLSCCFAKFNPYLILGGTY--SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS  197 (401)
Q Consensus       120 ~v~~~~~~~~~~~~l~~g~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd  197 (401)
                      ....++|+|++ .+.++.+.  ++.|.++|..+++......    +..+ .....+++  . .+...++.-.++.+.++|
T Consensus        22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~----l~~~-~fgeGi~~--~-g~~lyv~t~~~~~v~viD   92 (266)
T 2iwa_A           22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHK----MDDS-YFGEGLTL--L-NEKLYQVVWLKNIGFIYD   92 (266)
T ss_dssp             CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEE----CCTT-CCEEEEEE--E-TTEEEEEETTCSEEEEEE
T ss_pred             CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEe----cCCC-cceEEEEE--e-CCEEEEEEecCCEEEEEE
Confidence            46789999975 55544432  5799999999987653322    1122 22235555  3 334555556688999999


Q ss_pred             ccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC--CCC---ceeeeec
Q psy17342        198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG--HEG---PVVGLSS  272 (401)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~--~~~---~v~~i~~  272 (401)
                      ..+... ...+...      .. .-..  ++ ++++.++++..++.|.++|..+.+  .+..+..  +..   .++.+.+
T Consensus        93 ~~t~~v-~~~i~~g------~~-~g~g--lt-~Dg~~l~vs~gs~~l~viD~~t~~--v~~~I~Vg~~~~p~~~~nele~  159 (266)
T 2iwa_A           93 RRTLSN-IKNFTHQ------MK-DGWG--LA-TDGKILYGSDGTSILYEIDPHTFK--LIKKHNVKYNGHRVIRLNELEY  159 (266)
T ss_dssp             TTTTEE-EEEEECC------SS-SCCE--EE-ECSSSEEEECSSSEEEEECTTTCC--EEEEEECEETTEECCCEEEEEE
T ss_pred             CCCCcE-EEEEECC------CC-CeEE--EE-ECCCEEEEECCCCeEEEEECCCCc--EEEEEEECCCCcccccceeEEE
Confidence            875321 2222111      01 1122  34 467777777788999999987543  3444432  112   2456676


Q ss_pred             CccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC-------------CceEEEEECCCCCcEEEEEecCCEEEE
Q psy17342        273 HRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR-------------DYVMDVQWSPINPALFATVEVAGRVDL  339 (401)
Q Consensus       273 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~v~~v~~~~~~~~~l~~~~~d~~i~i  339 (401)
                      . +      +.+++....++.|.+.|..+++.+..+....             ...+.++|+|+++.+++++...+.+..
T Consensus       160 ~-d------g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~  232 (266)
T 2iwa_A          160 I-N------GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE  232 (266)
T ss_dssp             E-T------TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred             E-C------CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence            6 3      6666666668899999999999998887421             356899999999889999988999999


Q ss_pred             EeCCCCC
Q psy17342        340 WNLNLDT  346 (401)
Q Consensus       340 wd~~~~~  346 (401)
                      .++....
T Consensus       233 i~l~~~~  239 (266)
T 2iwa_A          233 IKLHLVR  239 (266)
T ss_dssp             EEEEECC
T ss_pred             EEEeccc
Confidence            9987643

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.76  E-value=4.8e-06  Score=71.40  Aligned_cols=242  Identities=11%  Similarity=0.065  Sum_probs=140.1

Q ss_pred             eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-------------------cCCCeeEEEEeC
Q psy17342         68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-------------------CQSPVLSCCFAK  128 (401)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-------------------~~~~v~~~~~~~  128 (401)
                      ..+++|++++..+.++.          .++.|..|+..++. ...+...                   ....+..+++.+
T Consensus        21 p~~i~~d~~g~~l~v~~----------~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~   89 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSV----------QDGRVIKYEGPNSG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL   89 (322)
T ss_dssp             CCCEECCTTCSSEEEEC----------TTSEEEEECCTTTC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET
T ss_pred             ceEEEEcCCCCEEEEEc----------CCCeEEEECCCCCc-eEEEecccccccccccccccchhccccCCCCceEEEcC
Confidence            56788999987777776          68899999887543 2222211                   013578899997


Q ss_pred             CCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecC-CceEEEEEeC-----------------C
Q psy17342        129 FNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISN-----------------D  190 (401)
Q Consensus       129 ~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~-----------------d  190 (401)
                      ++.+++++ ...+.|..+|..++........ . ..........+++  .+ ++...++-..                 +
T Consensus        90 ~~g~l~v~-d~~~~i~~~d~~~g~~~~~~~~-~-~~~~~~~p~~i~~--d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~  164 (322)
T 2fp8_A           90 QNNQLYIV-DCYYHLSVVGSEGGHATQLATS-V-DGVPFKWLYAVTV--DQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT  164 (322)
T ss_dssp             TTTEEEEE-ETTTEEEEECTTCEECEEEESE-E-TTEECSCEEEEEE--CTTTCCEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred             CCCcEEEE-ECCCCEEEEeCCCCEEEEeccc-C-CCCcccccceEEE--ecCCCEEEEECCcccccccccceehcccCCC
Confidence            33244444 3445588888765432211110 0 0011234677888  78 7876665432                 3


Q ss_pred             CcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEE-cCCceEEEEeCCCCCCCceeeecCCCCceee
Q psy17342        191 GRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVG-CEDGNVYSACRHGNKAGNVECYEGHEGPVVG  269 (401)
Q Consensus       191 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~  269 (401)
                      +.|..+|.....  ...  +..     .......++++ ++++.|+++ +.++.|+.+++..........+....+ ...
T Consensus       165 g~v~~~d~~~~~--~~~--~~~-----~~~~p~gia~~-~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~g  233 (322)
T 2fp8_A          165 GRLIKYDPSTKE--TTL--LLK-----ELHVPGGAEVS-ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGN  233 (322)
T ss_dssp             EEEEEEETTTTE--EEE--EEE-----EESCCCEEEEC-TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEE
T ss_pred             ceEEEEeCCCCE--EEE--ecc-----CCccCcceEEC-CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCC
Confidence            567777764311  010  000     11234568899 788765555 667899999987532212222221223 677


Q ss_pred             eecCccCCCCCCCcEEEEEeC----------CCeEEEEEeeCCCceEEEeecC----CceEEEEECCCCCcEEEEEecCC
Q psy17342        270 LSSHRAQGHIDFSHLYLTSSY----------DWSVKLWNIKENKPVHSFNEFR----DYVMDVQWSPINPALFATVEVAG  335 (401)
Q Consensus       270 i~~~~~~~~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~----~~v~~v~~~~~~~~~l~~~~~d~  335 (401)
                      +++.++      ++++++...          .+.|..+|. .++.+..+....    ..+..+++ .++ .++++....+
T Consensus       234 i~~d~~------G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g-~L~v~~~~~~  304 (322)
T 2fp8_A          234 IKRNAD------GHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDG-LLYIGTLFHG  304 (322)
T ss_dssp             EEECTT------SCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETT-EEEEECSSCS
T ss_pred             eEECCC------CCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCC-EEEEeecCCC
Confidence            888887      677666554          466888886 477776666432    34666666 345 3666666778


Q ss_pred             EEEEEeCCCC
Q psy17342        336 RVDLWNLNLD  345 (401)
Q Consensus       336 ~i~iwd~~~~  345 (401)
                      .|..+++...
T Consensus       305 ~i~~~~~~~~  314 (322)
T 2fp8_A          305 SVGILVYDKK  314 (322)
T ss_dssp             EEEEEEC---
T ss_pred             ceEEEecccc
Confidence            8999987643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.76  E-value=1.9e-06  Score=70.59  Aligned_cols=199  Identities=9%  Similarity=-0.009  Sum_probs=128.6

Q ss_pred             cEEEEEEeecCCceEEEEEeC--CCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEE
Q psy17342        169 PVFCMSVIGTQNAHNLISISN--DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYS  246 (401)
Q Consensus       169 ~v~~~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~  246 (401)
                      ....+.|  ++++.++++.+.  ++.|.++|+.+.. ......+..     + .....+++.  .+...++.-.++.+.+
T Consensus        22 f~~Gl~~--~~dg~Lyvstg~~~~s~v~~iD~~tg~-v~~~i~l~~-----~-~fgeGi~~~--g~~lyv~t~~~~~v~v   90 (266)
T 2iwa_A           22 FTQGLVY--AENDTLFESTGLYGRSSVRQVALQTGK-VENIHKMDD-----S-YFGEGLTLL--NEKLYQVVWLKNIGFI   90 (266)
T ss_dssp             CEEEEEE--CSTTEEEEEECSTTTCEEEEEETTTCC-EEEEEECCT-----T-CCEEEEEEE--TTEEEEEETTCSEEEE
T ss_pred             CcccEEE--eCCCeEEEECCCCCCCEEEEEECCCCC-EEEEEecCC-----C-cceEEEEEe--CCEEEEEEecCCEEEE
Confidence            3578988  777765555543  5789999998632 222222211     1 122245554  2345555667889999


Q ss_pred             EeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC-----CceEEEEEC
Q psy17342        247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR-----DYVMDVQWS  321 (401)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~v~~~  321 (401)
                      +|....  +.+..+.....  ....++++      +..++.+..+++|.++|..+.+.+.++....     ..++.+.|.
T Consensus        91 iD~~t~--~v~~~i~~g~~--~g~glt~D------g~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~  160 (266)
T 2iwa_A           91 YDRRTL--SNIKNFTHQMK--DGWGLATD------GKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI  160 (266)
T ss_dssp             EETTTT--EEEEEEECCSS--SCCEEEEC------SSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred             EECCCC--cEEEEEECCCC--CeEEEEEC------CCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence            998743  34555542211  12334455      3444445568899999999988888876422     136788888


Q ss_pred             CCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee----------cCCCCeEEEEecCCCcE-EEEEecCCcEEEEEeccC
Q psy17342        322 PINPALFATVEVAGRVDLWNLNLDTEVPATSAIV----------EGAPALSRVTWTPNGTQ-LCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       322 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~g~~-l~~~~~dg~v~iw~~~~~  390 (401)
                       ++. +++....++.|.+.|..+++.+..+...-          ......+.++|+|+++. ++++...+.|++.++...
T Consensus       161 -dg~-lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          161 -NGE-VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             -TTE-EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             -CCE-EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence             664 77777678899999999988766665320          01135689999999865 556667788999998765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.76  E-value=5.2e-05  Score=65.60  Aligned_cols=247  Identities=9%  Similarity=-0.035  Sum_probs=150.0

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      +..+|.+..++ .+|+.+.           ...|+..++....  ..........+..++|.+.+..++++-...+.|..
T Consensus        34 d~~~C~~~~~~-~~ll~~~-----------~~~I~~i~~~g~~--~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r   99 (349)
T 3v64_C           34 DRRSCKALGPE-PVLLFAN-----------RIDIRQVLPHRSE--YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILR   99 (349)
T ss_dssp             TSSCEEESSSC-CEEEEEC-----------BSCEEEECTTSCC--EEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCCcccccccC-ceeEeec-----------ccceEEEeCCCCe--eEEeecCCCceEEEEEeccccEEEEEeccCCceEE
Confidence            44567776663 3555444           4668888887432  22333445668999999866566667667788999


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS  224 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (401)
                      ++++........      .........+++  .+ .+.++++-...+.|.+.+++..  ..... +.     ........
T Consensus       100 ~~~~g~~~~~~~------~~~~~~p~glav--d~~~g~ly~~d~~~~~I~~~~~dG~--~~~~l-~~-----~~l~~P~~  163 (349)
T 3v64_C          100 ANLNGSNVEEVV------STGLESPGGLAV--DWVHDKLYWTDSGTSRIEVANLDGA--HRKVL-LW-----QSLEKPRA  163 (349)
T ss_dssp             EETTSCSCEEEE------CSSCSCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSC--SCEEE-EC-----TTCSCEEE
T ss_pred             EecCCCCceEEE------eCCCCCccEEEE--ecCCCeEEEEcCCCCeEEEEcCCCC--ceEEE-Ee-----CCCCCcce
Confidence            998876532211      111223456777  54 4555666666788999887631  11111 11     12245688


Q ss_pred             EEeccCCCCeEEEEcCC-ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC
Q psy17342        225 LAFPQNDVNNFVVGCED-GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK  303 (401)
Q Consensus       225 ~~~~~~~~~~l~~~~~d-~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  303 (401)
                      ++++|..+.++++-... +.|+.+++.+....  ......-...+.++++|..     +.++++-...+.|..+|+....
T Consensus       164 iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--~~~~~~~~~PnGla~d~~~-----~~lY~aD~~~~~I~~~~~dG~~  236 (349)
T 3v64_C          164 IALHPMEGTIYWTDWGNTPRIEASSMDGSGRR--IIADTHLFWPNGLTIDYAG-----RRMYWVDAKHHVIERANLDGSH  236 (349)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETTSCSCE--ESCCSSCSCEEEEEEETTT-----TEEEEEETTTTEEEEEETTSCS
T ss_pred             EEEecCcCeEEEeccCCCCEEEEEeCCCCCcE--EEEECCCCCcceEEEeCCC-----CEEEEEECCCCEEEEEeCCCCc
Confidence            99994455555555555 78999988754321  1112223446789999874     5666666667889999986433


Q ss_pred             ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcce
Q psy17342        304 PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPAT  351 (401)
Q Consensus       304 ~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  351 (401)
                      ....+........++++. .+ .++++-...+.|..++..+++....+
T Consensus       237 ~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          237 RKAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             CEEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             eEEEEeCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCCccEEe
Confidence            332233334456788883 34 47777777888998886666554443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.76  E-value=8.3e-06  Score=78.96  Aligned_cols=290  Identities=11%  Similarity=0.080  Sum_probs=167.3

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-------E------ecCCCeeEEEEeCCCC
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-------F------FCQSPVLSCCFAKFNP  131 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-------~------~~~~~v~~~~~~~~~~  131 (401)
                      ...|.++...++| .|..++          ..+-|.++|..++.......       .      -....|.++...+++ 
T Consensus       257 ~~~i~~i~~d~~g-~lWigt----------~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-  324 (781)
T 3v9f_A          257 SSYIFSIKQLKDN-KLWIAT----------ELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN-  324 (781)
T ss_dssp             CCCEEEEEECTTS-EEEEEE----------SSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSC-
T ss_pred             CceEEEEEECCCC-CEEEEe----------CCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC-
Confidence            3568899888887 466677          34678888987644322111       0      023578888887766 


Q ss_pred             ceEEEEecCCeEEEEECCCCCCCceeeccc---cccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccc
Q psy17342        132 YLILGGTYSGQIVLWDTRVQKKTPVHRTPL---SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETR  208 (401)
Q Consensus       132 ~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~  208 (401)
                       .|..|+.++-|..++............+.   ........|.++..  .+++. |..|+.++-|..++.....  ....
T Consensus       325 -~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~--d~~g~-lWigt~~~Gl~~~~~~~~~--~~~~  398 (781)
T 3v9f_A          325 -NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCD--DGQGK-LWIGTDGGGINVFENGKRV--AIYN  398 (781)
T ss_dssp             -CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEE--CTTSC-EEEEEBSSCEEEEETTEEE--EECC
T ss_pred             -CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEE--cCCCC-EEEEeCCCcEEEEECCCCe--EEEc
Confidence             35566667779999887654322110000   01123456888887  66554 5566666678888865311  1111


Q ss_pred             ccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec---CCCCceeeeecCccCCCCCCCcEE
Q psy17342        209 DLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE---GHEGPVVGLSSHRAQGHIDFSHLY  285 (401)
Q Consensus       209 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~~~~~~~l  285 (401)
                      . ..  .......|.++... +++ .|.+|+.++-+..++.....   ...+.   .....|.++...+.      +. |
T Consensus       399 ~-~~--~~~~~~~v~~i~~d-~~g-~lWigt~~~Gl~~~~~~~~~---~~~~~~~~~~~~~v~~i~~d~~------g~-l  463 (781)
T 3v9f_A          399 K-EN--RELLSNSVLCSLKD-SEG-NLWFGTYLGNISYYNTRLKK---FQIIELEKNELLDVRVFYEDKN------KK-I  463 (781)
T ss_dssp             --------CCCSBEEEEEEC-TTS-CEEEEETTEEEEEECSSSCE---EEECCSTTTCCCCEEEEEECTT------SE-E
T ss_pred             c-CC--CCCCCcceEEEEEC-CCC-CEEEEeccCCEEEEcCCCCc---EEEeccCCCCCCeEEEEEECCC------CC-E
Confidence            0 00  01134568888876 444 56667777778888875332   22222   13456888887765      44 4


Q ss_pred             EEEeCCCeEEEEEeeCCCceEEEeec-----CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee-cCCC
Q psy17342        286 LTSSYDWSVKLWNIKENKPVHSFNEF-----RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV-EGAP  359 (401)
Q Consensus       286 ~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~  359 (401)
                      ..|+. +-+..||..+++........     ...|.++...++|. +. .|+.++-|..||..+.+. ..+.... -...
T Consensus       464 wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lW-igt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~  539 (781)
T 3v9f_A          464 WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FW-IGTFGGGVGIYTPDMQLV-RKFNQYEGFCSN  539 (781)
T ss_dssp             EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-EE-EEESSSCEEEECTTCCEE-EEECTTTTCSCS
T ss_pred             EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC-EE-EEEcCCCEEEEeCCCCeE-EEccCCCCCCCC
Confidence            44554 56888998766544332221     35789999999986 44 444433477788765431 1111000 0134


Q ss_pred             CeEEEEecCCCcEEEEEecCCcEEEEEeccCcc
Q psy17342        360 ALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGI  392 (401)
Q Consensus       360 ~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~  392 (401)
                      .|.++...++|.+.+ |+.+|.|..||..+++.
T Consensus       540 ~i~~i~~d~~g~lWi-~T~~Glv~~~d~~~~~~  571 (781)
T 3v9f_A          540 TINQIYRSSKGQMWL-ATGEGLVCFPSARNFDY  571 (781)
T ss_dssp             CEEEEEECTTSCEEE-EETTEEEEESCTTTCCC
T ss_pred             eeEEEEECCCCCEEE-EECCCceEEECCCCCcE
Confidence            688999988888655 44477548888776643

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.73  E-value=4.1e-05  Score=67.23  Aligned_cols=230  Identities=8%  Similarity=-0.060  Sum_probs=140.9

Q ss_pred             CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEE
Q psy17342         96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV  175 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  175 (401)
                      ...|+..++.....  .........+..++|.+.+..++++-...+.|..++.+........      .........+++
T Consensus        95 ~~~I~~i~~~~~~~--~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~------~~~~~~p~glav  166 (386)
T 3v65_B           95 RIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV------STGLESPGGLAV  166 (386)
T ss_dssp             BSCEEEECTTSCCC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE------CSSCSCCCCEEE
T ss_pred             CccceeeccCCCcE--EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE------eCCCCCccEEEE
Confidence            56788888875432  2333445678999999866567777667788999998765432111      111123356666


Q ss_pred             eecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC-ceEEEEeCCCCC
Q psy17342        176 IGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED-GNVYSACRHGNK  253 (401)
Q Consensus       176 ~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~~~~~~~~  253 (401)
                        .+ .+.++++-...+.|.+.++..  ...... +     .........+++.|..+.++++-... +.|+.+++.+..
T Consensus       167 --d~~~g~lY~~d~~~~~I~~~~~dg--~~~~~l-~-----~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~  236 (386)
T 3v65_B          167 --DWVHDKLYWTDSGTSRIEVANLDG--AHRKVL-L-----WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG  236 (386)
T ss_dssp             --ETTTTEEEEEETTTTEEEECBTTS--CSCEEE-E-----CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred             --EeCCCeEEEEcCCCCeEEEEeCCC--CceEEe-e-----cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence              54 455556666677888888763  111111 1     11224578899994445455554455 789988887543


Q ss_pred             CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEec
Q psy17342        254 AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEV  333 (401)
Q Consensus       254 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~  333 (401)
                      .  .......-...+.|+++|..     +.++++-+..+.|..+|+........+........++++. .+ .++++-..
T Consensus       237 ~--~~~~~~~~~~PnGlavd~~~-----~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~~  307 (386)
T 3v65_B          237 R--RIIADTHLFWPNGLTIDYAG-----RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDWH  307 (386)
T ss_dssp             C--EEEECSSCSCEEEEEEEGGG-----TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEETT
T ss_pred             c--EEEEECCCCCeeeEEEeCCC-----CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CC-EEEEeeCC
Confidence            2  11222223446789999874     5666666667889999986433333333334456788883 33 47777777


Q ss_pred             CCEEEEEeCCCCCCCcceE
Q psy17342        334 AGRVDLWNLNLDTEVPATS  352 (401)
Q Consensus       334 d~~i~iwd~~~~~~~~~~~  352 (401)
                      .+.|..++..+++....+.
T Consensus       308 ~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          308 TKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             TTEEEEEETTTCCSCEEEE
T ss_pred             CCeEEEEECCCCcceEEEc
Confidence            8899999976666554443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.73  E-value=5.6e-06  Score=67.39  Aligned_cols=211  Identities=11%  Similarity=0.128  Sum_probs=133.9

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      ..+..++|+|++..|+++.-         .++.|...|.. ++....+.+......-.+++.+++ .++++.-.++.+.+
T Consensus        27 ~~lSGla~~~~~~~L~aV~d---------~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~~   95 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTIN---------KPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDN-QFVISDERDYAIYV   95 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEE---------TTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTT-EEEEEETTTTEEEE
T ss_pred             cCcceeEEeCCCCEEEEEEC---------CCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCC-EEEEEECCCCcEEE
Confidence            56999999999888887773         68899999988 776666655444678889998866 56566556778999


Q ss_pred             EECCCCCCCc-eeec--cccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccc---cccCCc
Q psy17342        146 WDTRVQKKTP-VHRT--PLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYN---NKQTKN  219 (401)
Q Consensus       146 w~~~~~~~~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~---~~~~~~  219 (401)
                      +++....... ....  ++.....+.....++|  .+.++.|+++.+.....+|.++...... .+.....   ......
T Consensus        96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~--d~~~~~L~va~E~~p~~i~~~~g~~~~~-~l~i~~~~~~~~~~~~  172 (255)
T 3qqz_A           96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAY--SRQDHTFWFFKEKNPIEVYKVNGLLSSN-ELHISKDKALQRQFTL  172 (255)
T ss_dssp             EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEE--ETTTTEEEEEEESSSEEEEEEESTTCSS-CCEEEECHHHHHTCCS
T ss_pred             EEcCCCCeeeeeeeeccccccccccCCcceEEE--eCCCCEEEEEECcCCceEEEEcccccCC-ceeeecchhhcccccc
Confidence            9887654311 1111  1111234566789999  8888777777776666777765211110 1111100   001123


Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec-CCC------CceeeeecCccCCCCCCCcEEEEEeCCC
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE-GHE------GPVVGLSSHRAQGHIDFSHLYLTSSYDW  292 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~-~~~------~~v~~i~~~~~~~~~~~~~~l~s~~~d~  292 (401)
                      ..+..++++|..+.+++....+..+..+|..+... ....+. +..      ..-..|++.|+      ++++++ ++.+
T Consensus       173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~-~~~~L~~g~~~l~~~~~qpEGia~d~~------G~lyIv-sE~n  244 (255)
T 3qqz_A          173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVI-GEMSLTKGSRGLSHNIKQAEGVAMDAS------GNIYIV-SEPN  244 (255)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE-EEEECSTTGGGCSSCCCSEEEEEECTT------CCEEEE-ETTT
T ss_pred             CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEE-EEEEcCCccCCcccccCCCCeeEECCC------CCEEEE-cCCc
Confidence            45789999988888888888899999999875421 112222 111      24578899987      665555 6556


Q ss_pred             eEEEEE
Q psy17342        293 SVKLWN  298 (401)
Q Consensus       293 ~i~iwd  298 (401)
                      .++.+.
T Consensus       245 ~~y~f~  250 (255)
T 3qqz_A          245 RFYRFT  250 (255)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            555553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.72  E-value=2.6e-06  Score=81.87  Aligned_cols=251  Identities=12%  Similarity=0.031  Sum_probs=131.3

Q ss_pred             CeeEEEEe-CCCCceEEEEecCC----eEEEEECCCC-CCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC---
Q psy17342        120 PVLSCCFA-KFNPYLILGGTYSG----QIVLWDTRVQ-KKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND---  190 (401)
Q Consensus       120 ~v~~~~~~-~~~~~~l~~g~~dg----~v~iw~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---  190 (401)
                      .+...+|| |++..++++.+.+|    .|+++|+.++ +....     .+.   .....++|  +|+++.|+....|   
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-----~~~---~~~~~~~W--spDg~~l~y~~~d~~~  244 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-----KVS---GTNGEIVW--GPDHTSLFYVTKDETL  244 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-----CEE---EECSCCEE--CSSTTEEEEEEECTTC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-----ccc---CceeeEEE--ecCCCEEEEEEECCCC
Confidence            57789999 99855555544444    4999999887 52210     001   11235778  8999877777655   


Q ss_pred             --CcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc---CCceEEEEeCCCCCCCc--eeeecCC
Q psy17342        191 --GRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC---EDGNVYSACRHGNKAGN--VECYEGH  263 (401)
Q Consensus       191 --g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~~~~~~~~~~~~--~~~~~~~  263 (401)
                        ..|.++++.+... ........    ........+.|+ +++++|+..+   ....|+++|+.......  .......
T Consensus       245 ~~~~v~~~~lgt~~~-~~~lv~~~----~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~  318 (751)
T 2xe4_A          245 RENKVWRHVMGKLQS-EDVCLYEE----HNPLFSAFMYKA-ADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE  318 (751)
T ss_dssp             CEEEEEEEETTSCGG-GCEEEEEC----CCTTCEEEEEEC-TTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC
T ss_pred             CCCEEEEEECCCCch-hcEEEEec----CCCceEEEEEEC-CCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC
Confidence              2466677654211 11111110    122235678899 8898887665   34468888887542222  2222333


Q ss_pred             CCceeeeecCccCCCCCCCcEEEEEeCC--C--eEEEEEeeCCCceEE-EeecCC--ceEEEEECCCCCcEEEEEecCCE
Q psy17342        264 EGPVVGLSSHRAQGHIDFSHLYLTSSYD--W--SVKLWNIKENKPVHS-FNEFRD--YVMDVQWSPINPALFATVEVAGR  336 (401)
Q Consensus       264 ~~~v~~i~~~~~~~~~~~~~~l~s~~~d--~--~i~iwd~~~~~~~~~-~~~~~~--~v~~v~~~~~~~~~l~~~~~d~~  336 (401)
                      .....++.|+..      +.+++....+  +  .|..+|+.++..... +..+..  .+..+.+.  +..++++...++.
T Consensus       319 ~~~~~s~~~~~g------~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~  390 (751)
T 2xe4_A          319 KGVRYDVQMHGT------SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGL  390 (751)
T ss_dssp             TTCCEEEEEETT------TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTE
T ss_pred             CCceEEEeeeeC------CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCE
Confidence            445555554432      3455555444  3  566666654222222 333333  34555554  4457888888886


Q ss_pred             EE--EEeC-------CCCCCCcceEEeecCCCCeEEEEe----cCCCc-EEEEEecC---CcEEEEEeccCccceee
Q psy17342        337 VD--LWNL-------NLDTEVPATSAIVEGAPALSRVTW----TPNGT-QLCVGDEK---GAITMFDVGEVGIACLK  396 (401)
Q Consensus       337 i~--iwd~-------~~~~~~~~~~~~~~~~~~v~~~~~----s~~g~-~l~~~~~d---g~v~iw~~~~~~~~~l~  396 (401)
                      .+  ++|+       ..++....+  .......+..+.+    ++++. ++++.+..   ..++.+|+.+++.+.++
T Consensus       391 ~~l~~~dl~~~~~~~~~g~~~~~l--~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~l~  465 (751)
T 2xe4_A          391 TRIWTMMADSQDGVFKAGTGLREV--VMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVK  465 (751)
T ss_dssp             EEEEEEECCTTTSCCCTTTCCEEC--CCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEEEE
T ss_pred             EEEEEEecccccccccCCccceEE--CCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence            55  4554       222202222  1222222334433    34654 44444332   45777777776544443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.72  E-value=5e-06  Score=71.28  Aligned_cols=250  Identities=6%  Similarity=-0.038  Sum_probs=138.8

Q ss_pred             CCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeecc-c------------cccCCCCcEEEEEEeecC-CceEE
Q psy17342        119 SPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP-L------------SVMAHTHPVFCMSVIGTQ-NAHNL  184 (401)
Q Consensus       119 ~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~-~------------~~~~~~~~v~~~~~~~~~-~~~~l  184 (401)
                      ....+++|.+++ ++++++..++.|..|+..+.......... .            ...........+++  .+ ++. |
T Consensus        19 ~~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~--~~~~g~-l   94 (322)
T 2fp8_A           19 YAPNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY--NLQNNQ-L   94 (322)
T ss_dssp             SCCCCEECCTTC-SSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE--ETTTTE-E
T ss_pred             CCceEEEEcCCC-CEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEE--cCCCCc-E
Confidence            346778899876 66777888899999988764432111000 0            00001235788888  76 555 4


Q ss_pred             EEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccC-CCCeEEEEcC-----------------CceEEE
Q psy17342        185 ISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQN-DVNNFVVGCE-----------------DGNVYS  246 (401)
Q Consensus       185 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~-----------------d~~i~~  246 (401)
                      +.+...+.+..+|..... . ..+....  ..........+++. + ++++.++-..                 ++.|+.
T Consensus        95 ~v~d~~~~i~~~d~~~g~-~-~~~~~~~--~~~~~~~p~~i~~d-~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  169 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGH-A-TQLATSV--DGVPFKWLYAVTVD-QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK  169 (322)
T ss_dssp             EEEETTTEEEEECTTCEE-C-EEEESEE--TTEECSCEEEEEEC-TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred             EEEECCCCEEEEeCCCCE-E-EEecccC--CCCcccccceEEEe-cCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence            444444557777765311 1 1110000  00012346778888 6 7766555432                 367888


Q ss_pred             EeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEE-EEEeCCCeEEEEEeeCCC--ceEEEeecCCceEEEEECCC
Q psy17342        247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLY-LTSSYDWSVKLWNIKENK--PVHSFNEFRDYVMDVQWSPI  323 (401)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~~~  323 (401)
                      ++.....   ...+.........++++|+      ++.| ++-...+.|.+|++....  ....+....+ ...+++.++
T Consensus       170 ~d~~~~~---~~~~~~~~~~p~gia~~~d------g~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~  239 (322)
T 2fp8_A          170 YDPSTKE---TTLLLKELHVPGGAEVSAD------SSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNAD  239 (322)
T ss_dssp             EETTTTE---EEEEEEEESCCCEEEECTT------SSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTT
T ss_pred             EeCCCCE---EEEeccCCccCcceEECCC------CCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCC
Confidence            8875332   2222111233467899988      5644 444557899999987532  1222222233 788999999


Q ss_pred             CCcEEEEEec----------CCEEEEEeCCCCCCCcceEEeecC-CCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        324 NPALFATVEV----------AGRVDLWNLNLDTEVPATSAIVEG-APALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       324 ~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      |. ++++...          .+.|..+|.. ++.+..+....+. -..++.+++ .+++++++....+.|.++++...
T Consensus       240 G~-l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          240 GH-FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             SC-EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred             CC-EEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence            97 5555443          4668888764 4433333221111 234666666 46666666667788999998754

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.71  E-value=1.9e-06  Score=69.80  Aligned_cols=193  Identities=10%  Similarity=0.055  Sum_probs=121.5

Q ss_pred             cEEEEEEeecCCceEEEEEeCCC--cEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEE
Q psy17342        169 PVFCMSVIGTQNAHNLISISNDG--RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYS  246 (401)
Q Consensus       169 ~v~~~~~~~~~~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~  246 (401)
                      -...+.|  + ++.++.+.+.+|  .|+.+|+.++. ......+..      ..---.++..  .....++.-.++.+.+
T Consensus        44 ftqGL~~--~-~~~LyestG~~g~S~v~~vD~~Tgk-v~~~~~l~~------~~FgeGit~~--g~~ly~ltw~~~~v~v  111 (262)
T 3nol_A           44 FTEGFFY--R-NGYFYESTGLNGRSSIRKVDIESGK-TLQQIELGK------RYFGEGISDW--KDKIVGLTWKNGLGFV  111 (262)
T ss_dssp             EEEEEEE--E-TTEEEEEEEETTEEEEEEECTTTCC-EEEEEECCT------TCCEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred             ccceEEE--E-CCEEEEECCCCCCceEEEEECCCCc-EEEEEecCC------ccceeEEEEe--CCEEEEEEeeCCEEEE
Confidence            3477888  5 667777777776  89999998733 222222221      1111223433  2344455556889999


Q ss_pred             EeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC-----CceEEEEEC
Q psy17342        247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR-----DYVMDVQWS  321 (401)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~v~~~  321 (401)
                      +|..+.  +.+.++....   ....+.++      +..|+.+..+++|.++|..+.+.+.++....     ..++.+.|.
T Consensus       112 ~D~~t~--~~~~ti~~~~---eG~glt~d------g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~  180 (262)
T 3nol_A          112 WNIRNL--RQVRSFNYDG---EGWGLTHN------DQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV  180 (262)
T ss_dssp             EETTTC--CEEEEEECSS---CCCCEEEC------SSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred             EECccC--cEEEEEECCC---CceEEecC------CCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence            998743  4566665322   22333344      3445544557889999999998888876521     335667886


Q ss_pred             CCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe---------ecCCCCeEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342        322 PINPALFATVEVAGRVDLWNLNLDTEVPATSAI---------VEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV  387 (401)
Q Consensus       322 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~  387 (401)
                       +|. +++..-.++.|.+.|.++++.+..+...         .......+.++|+|+++.|++.+..- =++|.+
T Consensus       181 -~G~-lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W-p~~~ev  252 (262)
T 3nol_A          181 -DGE-IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW-PKVFEI  252 (262)
T ss_dssp             -TTE-EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC-SEEEEE
T ss_pred             -CCE-EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC-CceEEE
Confidence             664 7777767889999999998876665531         01124578999999988877776543 334444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.67  E-value=9e-05  Score=63.17  Aligned_cols=229  Identities=10%  Similarity=-0.005  Sum_probs=135.0

Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      ...|+..++........       .........++|  .+. +..+++-...+.|..+++...........+.    ...
T Consensus         9 ~~~I~~i~~~~~~~~~~-------~~~~~~p~g~~~--d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~----~~~   75 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSL-------IPNLRNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI----SRD   75 (316)
T ss_dssp             BSSEEEEETTSCCCEEE-------ECSCSSEEEEEE--ETTTTEEEEEETTTTEEEEEEC--------CEEEE----CSS
T ss_pred             CCeEEEEECCCcceEeh-------hcCCCceEEEEE--EeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE----eCC
Confidence            45689999887654322       123345778988  665 4555565667889999886411000000010    001


Q ss_pred             ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC-CeEEEE
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD-WSVKLW  297 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d-~~i~iw  297 (401)
                      ......+++.+..++++++-...+.|.++++.+...  .............+++.|..     +.++++.... +.|...
T Consensus        76 ~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~--~~~~~~~~~~P~~iavdp~~-----g~ly~~d~~~~~~I~~~  148 (316)
T 1ijq_A           76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KTLFRENGSKPRAIVVDPVH-----GFMYWTDWGTPAKIKKG  148 (316)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE--EEEEECTTCCEEEEEEETTT-----TEEEEEECSSSCEEEEE
T ss_pred             CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce--EEEEECCCCCcceEEeCCCC-----CEEEEEccCCCCeEEEE
Confidence            124567888733455556667788999999875432  11222233456889999864     4555554433 678888


Q ss_pred             EeeCCCceEEEe-ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEE
Q psy17342        298 NIKENKPVHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVG  376 (401)
Q Consensus       298 d~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  376 (401)
                      ++. ++....+. ..-...+.++++|++..++++-...+.|..+|+... ....+............+++. .+..+++-
T Consensus       149 ~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d  225 (316)
T 1ijq_A          149 GLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTD  225 (316)
T ss_dssp             ETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEE
T ss_pred             cCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEE
Confidence            774 44444442 223467899999987767777777789999999743 222322111112345677775 45666666


Q ss_pred             ecCCcEEEEEeccCc
Q psy17342        377 DEKGAITMFDVGEVG  391 (401)
Q Consensus       377 ~~dg~v~iw~~~~~~  391 (401)
                      ...+.|..++..+++
T Consensus       226 ~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          226 IINEAIFSANRLTGS  240 (316)
T ss_dssp             TTTTEEEEEETTTCC
T ss_pred             CCCCeEEEEeCCCCc
Confidence            667889998876663

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.66  E-value=5.8e-06  Score=76.56  Aligned_cols=104  Identities=11%  Similarity=-0.035  Sum_probs=70.2

Q ss_pred             cEEEEEeCCCeEEEEEeeCCCceEEEeecC-------------Cce--------------------------EEEEECCC
Q psy17342        283 HLYLTSSYDWSVKLWNIKENKPVHSFNEFR-------------DYV--------------------------MDVQWSPI  323 (401)
Q Consensus       283 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~v--------------------------~~v~~~~~  323 (401)
                      ..++.++.+|.+.++|..+++.+..+....             .++                          ..++++|+
T Consensus       317 ~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~  396 (571)
T 2ad6_A          317 PLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE  396 (571)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             EEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC
Confidence            357778889999999999998887765321             111                          23567887


Q ss_pred             CCcEEEEEe-------------------------------------cCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEe
Q psy17342        324 NPALFATVE-------------------------------------VAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTW  366 (401)
Q Consensus       324 ~~~~l~~~~-------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  366 (401)
                      .. +++...                                     .+|.|..||+.+++.+.....  .  ..+....+
T Consensus       397 ~g-~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~--~--~~~~~~~~  471 (571)
T 2ad6_A          397 SR-TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE--K--FAAWGGTL  471 (571)
T ss_dssp             TT-EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE--S--SCCCSBCE
T ss_pred             CC-EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC--C--CCccceeE
Confidence            76 444432                                     357899999998886655432  2  12222222


Q ss_pred             cCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        367 TPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       367 s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      ...+..+++++.||.|+.||.++++
T Consensus       472 ~t~gg~v~~g~~dg~l~a~D~~tG~  496 (571)
T 2ad6_A          472 YTKGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCC
T ss_pred             EECCCEEEEEcCCCeEEEEECCCCC
Confidence            3346677789999999999999985

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.64  E-value=0.00011  Score=62.61  Aligned_cols=231  Identities=9%  Similarity=-0.095  Sum_probs=141.1

Q ss_pred             CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEE
Q psy17342         96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV  175 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  175 (401)
                      ...|+..+++...............+..++|.+.+..+..+-...+.|..++.+........     ....-.....+++
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~-----~~~~l~~p~glav   86 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV-----VVSGLLSPDGLAC   86 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE-----EEECCSCCCEEEE
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE-----EcCCCCCccEEEE
Confidence            57899999986543333444334567799999866567777667788999998766321110     0111123456777


Q ss_pred             eecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc--CCceEEEEeCCCC
Q psy17342        176 IGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC--EDGNVYSACRHGN  252 (401)
Q Consensus       176 ~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~~~~~~~~  252 (401)
                        .+ .+..+++-...+.|.++++..  ...... .     .........+++. +.+..|+.+.  ..+.|+..++.+.
T Consensus        87 --d~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l-~-----~~~~~~P~giavd-p~~g~ly~td~~~~~~I~r~~~dG~  155 (318)
T 3sov_A           87 --DWLGEKLYWTDSETNRIEVSNLDG--SLRKVL-F-----WQELDQPRAIALD-PSSGFMYWTDWGEVPKIERAGMDGS  155 (318)
T ss_dssp             --ETTTTEEEEEETTTTEEEEEETTS--CSCEEE-E-----CSSCSSEEEEEEE-GGGTEEEEEECSSSCEEEEEETTSC
T ss_pred             --EcCCCeEEEEECCCCEEEEEECCC--CcEEEE-E-----eCCCCCccEEEEe-CCCCEEEEEecCCCCEEEEEEcCCC
Confidence              54 555666666778899998863  111111 1     0123456889998 4444444443  3678998888754


Q ss_pred             CCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEe
Q psy17342        253 KAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVE  332 (401)
Q Consensus       253 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~  332 (401)
                      ...  ......-...+.++++|..     +.++++-+..+.|..+|+.................++++..+  .++.+-.
T Consensus       156 ~~~--~~~~~~l~~Pnglavd~~~-----~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~--~lywtd~  226 (318)
T 3sov_A          156 SRF--IIINSEIYWPNGLTLDYEE-----QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDW  226 (318)
T ss_dssp             SCE--EEECSSCSCEEEEEEETTT-----TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT--EEEEEET
T ss_pred             CeE--EEEECCCCCccEEEEeccC-----CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC--EEEEEec
Confidence            321  1122223345789999864     556666666789999998643322222323445677887543  4777777


Q ss_pred             cCCEEEEEeCCCCCCCcce
Q psy17342        333 VAGRVDLWNLNLDTEVPAT  351 (401)
Q Consensus       333 ~d~~i~iwd~~~~~~~~~~  351 (401)
                      ..+.|..++..+++....+
T Consensus       227 ~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          227 STHSILACNKYTGEGLREI  245 (318)
T ss_dssp             TTTEEEEEETTTCCSCEEE
T ss_pred             CCCeEEEEECCCCCceEEE
Confidence            7889999998777654443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.62  E-value=2.5e-06  Score=80.70  Aligned_cols=83  Identities=11%  Similarity=0.069  Sum_probs=53.7

Q ss_pred             CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC
Q psy17342        291 DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG  370 (401)
Q Consensus       291 d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  370 (401)
                      ++.|..||+.+++.+.+...+. +.....+...+. +++.++.|+.|+.||.++++.+..+..  +....-.-+.+..+|
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg-~vf~g~~dg~l~a~d~~tG~~l~~~~~--~~~~~~~p~~~~~~G  512 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQFEA--QSGIVAAPMTFELAG  512 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEEC--SSCCCSCCEEEEETT
T ss_pred             cceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCC-EEEEECCcccchhhhhhcChhheEecC--CCCcccCceEEEECC
Confidence            4889999999999888876533 333333444554 677789999999999999987666543  221111223445577


Q ss_pred             c-EEEEEe
Q psy17342        371 T-QLCVGD  377 (401)
Q Consensus       371 ~-~l~~~~  377 (401)
                      + ++++++
T Consensus       513 ~~yva~~~  520 (668)
T 1kv9_A          513 RQYVAIMA  520 (668)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            6 444443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.61  E-value=8.6e-06  Score=65.94  Aligned_cols=184  Identities=13%  Similarity=0.044  Sum_probs=120.9

Q ss_pred             cEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEe
Q psy17342        169 PVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSAC  248 (401)
Q Consensus       169 ~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~  248 (401)
                      -...+.|  . ++.++.+.+.+|.|+.+|+.+.......  +..      ..---.+++.  .....++.-.++.+.++|
T Consensus        56 ftqGL~~--~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~------~~FgeGit~~--g~~Ly~ltw~~~~v~V~D  122 (268)
T 3nok_A           56 FTQGLVF--H-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG------NIFAEGLASD--GERLYQLTWTEGLLFTWS  122 (268)
T ss_dssp             CEEEEEE--E-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT------TCCEEEEEEC--SSCEEEEESSSCEEEEEE
T ss_pred             ccceEEE--E-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC------CcceeEEEEe--CCEEEEEEccCCEEEEEE
Confidence            3467887  4 5678888889999999999874433332  322      1111224443  345555566788999999


Q ss_pred             CCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC-----CceEEEEECCC
Q psy17342        249 RHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR-----DYVMDVQWSPI  323 (401)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~v~~~~~  323 (401)
                      ..+  .+.+.++... ..-..++  ++      +..|+.+..+++|.++|..+.+.+.++....     ..++.+.|. +
T Consensus       123 ~~T--l~~~~ti~~~-~eGwGLt--~D------g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d  190 (268)
T 3nok_A          123 GMP--PQRERTTRYS-GEGWGLC--YW------NGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-N  190 (268)
T ss_dssp             TTT--TEEEEEEECS-SCCCCEE--EE------TTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             CCc--CcEEEEEeCC-CceeEEe--cC------CCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence            874  3455565532 2223344  44      4555555668999999999998888876422     245677887 6


Q ss_pred             CCcEEEEEecCCEEEEEeCCCCCCCcceEEe----------ecCCCCeEEEEecCCCcEEEEEec
Q psy17342        324 NPALFATVEVAGRVDLWNLNLDTEVPATSAI----------VEGAPALSRVTWTPNGTQLCVGDE  378 (401)
Q Consensus       324 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------~~~~~~v~~~~~s~~g~~l~~~~~  378 (401)
                      |. +++..-.++.|.+.|.++++.+..+...          .......+.++++|+++.|++.+.
T Consensus       191 G~-lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          191 GV-IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TE-EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CE-EEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            64 7777767889999999998876665532          012246789999998766666554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.61  E-value=2.9e-06  Score=80.26  Aligned_cols=253  Identities=11%  Similarity=0.039  Sum_probs=133.9

Q ss_pred             eEEEEeCCCCceEEEEecCC-----------eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-
Q psy17342        122 LSCCFAKFNPYLILGGTYSG-----------QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-  189 (401)
Q Consensus       122 ~~~~~~~~~~~~l~~g~~dg-----------~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-  189 (401)
                      .++++.|.+.++++.|+.+.           .+.+||..+++-......+   ..+.....++++  ..++..++.|+. 
T Consensus       189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~---~~~~~~~~~~~~--~~~g~lyv~GG~~  263 (656)
T 1k3i_A          189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV---TKHDMFCPGISM--DGNGQIVVTGGND  263 (656)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE---CSCCCSSCEEEE--CTTSCEEEECSSS
T ss_pred             eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC---CCCCCccccccC--CCCCCEEEeCCCC
Confidence            36677773336777765432           5889999887654332211   122223334555  678888888884 


Q ss_pred             CCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc-CC-----ceEEEEeCCCCCCCceeeecCC
Q psy17342        190 DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-ED-----GNVYSACRHGNKAGNVECYEGH  263 (401)
Q Consensus       190 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----~~i~~~~~~~~~~~~~~~~~~~  263 (401)
                      +..+.+||..+.. -.....+..     .... .+++.. +++++++.|+ .+     ..+.+||....+-   ..+...
T Consensus       264 ~~~v~~yd~~t~~-W~~~~~~~~-----~R~~-~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W---~~~~~~  332 (656)
T 1k3i_A          264 AKKTSLYDSSSDS-WIPGPDMQV-----ARGY-QSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW---TSLPNA  332 (656)
T ss_dssp             TTCEEEEEGGGTE-EEECCCCSS-----CCSS-CEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETTTTEE---EEETTS
T ss_pred             CCceEEecCcCCc-eeECCCCCc-----cccc-cceEEe-cCCeEEEEeCcccCCcccccceEeCCCCCcc---eeCCCc
Confidence            4579999987521 111111111     1111 233344 5788888888 34     4588899875432   111100


Q ss_pred             C-Cce----eeeecCccCCCCCCCcEEEEEeCCC---------eEEEEEeeCCCceEEEeecCC---------ceEEEEE
Q psy17342        264 E-GPV----VGLSSHRAQGHIDFSHLYLTSSYDW---------SVKLWNIKENKPVHSFNEFRD---------YVMDVQW  320 (401)
Q Consensus       264 ~-~~v----~~i~~~~~~~~~~~~~~l~s~~~d~---------~i~iwd~~~~~~~~~~~~~~~---------~v~~v~~  320 (401)
                      . .+.    ....+..+      +..++.++.++         .+..||..+..-......+..         .-.++.+
T Consensus       333 ~~~p~~~~~~~~~~~~~------~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~  406 (656)
T 1k3i_A          333 KVNPMLTADKQGLYRSD------NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMY  406 (656)
T ss_dssp             CSGGGCCCCTTGGGTTT------CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEE
T ss_pred             cccccccccccceeecC------CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEec
Confidence            0 000    01112222      35555565444         567888876553333222111         2244555


Q ss_pred             CCCCCcEEEEEecCC-----------EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC----------
Q psy17342        321 SPINPALFATVEVAG-----------RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK----------  379 (401)
Q Consensus       321 ~~~~~~~l~~~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----------  379 (401)
                      ...+..+++.|+.++           .|.+||..+................-.++...|+|++++.|+.+          
T Consensus       407 ~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~  486 (656)
T 1k3i_A          407 DAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP  486 (656)
T ss_dssp             ETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSB
T ss_pred             cCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCc
Confidence            443334888887543           67888877654221110011111122345667899999999864          


Q ss_pred             -CcEEEEEeccCccceee
Q psy17342        380 -GAITMFDVGEVGIACLK  396 (401)
Q Consensus       380 -g~v~iw~~~~~~~~~l~  396 (401)
                       ..+.+||..+.+...+.
T Consensus       487 ~~~v~~ydp~t~~W~~~~  504 (656)
T 1k3i_A          487 VFTPEIYVPEQDTFYKQN  504 (656)
T ss_dssp             CCCCEEEEGGGTEEEECC
T ss_pred             ccceEEEcCCCCceeecC
Confidence             46899999887654443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.60  E-value=4.2e-05  Score=73.48  Aligned_cols=252  Identities=7%  Similarity=-0.077  Sum_probs=133.8

Q ss_pred             ceEEEEec-CCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCC-CCCceEEEecCCCeeEEEEeCCCCceEEEEecC----
Q psy17342         67 NVTYMDWS-TQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK-KTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS----  140 (401)
Q Consensus        67 ~v~~~~~~-~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d----  140 (401)
                      .+...+|| |||++|+.+...     .++....|+++|+.++ +.+.... .  .....++|+|++..++++. .+    
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~-----~G~~~~~l~v~dl~~g~~~l~~~~-~--~~~~~~~WspDg~~l~y~~-~d~~~~  245 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDM-----SGNEVYTIEFKRISDPSQTIADKV-S--GTNGEIVWGPDHTSLFYVT-KDETLR  245 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEES-----SSSSCEEEEEEETTCTTCCCCCCE-E--EECSCCEECSSTTEEEEEE-ECTTCC
T ss_pred             EEeeeEecCCCCCEEEEEEeC-----CCCceEEEEEEECCCCCEeCCccc-c--CceeeEEEecCCCEEEEEE-ECCCCC
Confidence            57889999 999998887731     1122346999999987 6433211 1  1235789999986666554 33    


Q ss_pred             -CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC---CCcEEEeeccCCCCCcccccccccccc
Q psy17342        141 -GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN---DGRLCSWSLEMLSSPQETRDLQYNNKQ  216 (401)
Q Consensus       141 -g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~  216 (401)
                       ..|.++++.+.......   +...........+.|  ++++++|+..+.   ...|.++|+...........+.    .
T Consensus       246 ~~~v~~~~lgt~~~~~~l---v~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~----~  316 (751)
T 2xe4_A          246 ENKVWRHVMGKLQSEDVC---LYEEHNPLFSAFMYK--AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR----P  316 (751)
T ss_dssp             EEEEEEEETTSCGGGCEE---EEECCCTTCEEEEEE--CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS----C
T ss_pred             CCEEEEEECCCCchhcEE---EEecCCCceEEEEEE--CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee----c
Confidence             35788888765422110   000122234567778  999998876653   3357777876521111001111    1


Q ss_pred             CCccceEEEEeccCCCCeEEEEcCC----ceEEEEeCCCCCCCceee-ecCCCC--ceeeeecCccCCCCCCCcEEEEEe
Q psy17342        217 TKNLAVLSLAFPQNDVNNFVVGCED----GNVYSACRHGNKAGNVEC-YEGHEG--PVVGLSSHRAQGHIDFSHLYLTSS  289 (401)
Q Consensus       217 ~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~~~~~~~~~~~~~~~-~~~~~~--~v~~i~~~~~~~~~~~~~~l~s~~  289 (401)
                      .......++.|+ ..+.+++....+    ..|+.+++... . .... +..+..  .+..+.+..       +.++++..
T Consensus       317 ~~~~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~-~-~~~~~li~~~~~~~l~~~~~~~-------~~lv~~~~  386 (751)
T 2xe4_A          317 REKGVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQP-S-DWSHVLVDHSEDVFMESIAVRS-------NYLVVAGR  386 (751)
T ss_dssp             CCTTCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTST-T-CCCCEEECCCSSEEEEEEEECS-------SEEEEEEE
T ss_pred             CCCCceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCc-c-cceeeEECCCCCcEEEEEEEEC-------CEEEEEEE
Confidence            123344555555 334444444433    35777776531 1 1122 222332  344555542       46677777


Q ss_pred             CCCeEEE--EEe-------eCCCceEEEeec-CCceEEEEE----CCCCCcEEEEEecC---CEEEEEeCCCCC
Q psy17342        290 YDWSVKL--WNI-------KENKPVHSFNEF-RDYVMDVQW----SPINPALFATVEVA---GRVDLWNLNLDT  346 (401)
Q Consensus       290 ~d~~i~i--wd~-------~~~~~~~~~~~~-~~~v~~v~~----~~~~~~~l~~~~~d---~~i~iwd~~~~~  346 (401)
                      .++..+|  +|+       ..++....+... ...+..+.+    ++++..++++.+..   ..+..+|+.+++
T Consensus       387 ~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          387 RAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             ETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             eCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            7886555  454       233314444321 122334433    44665566655443   467777877654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.60  E-value=0.00011  Score=59.92  Aligned_cols=207  Identities=11%  Similarity=0.054  Sum_probs=129.7

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS  197 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd  197 (401)
                      ...+..++|.|++..++++...++.|...|.. ++....    +.+.+ ......|++  .+++.++++.-.++.+.+++
T Consensus        26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~----i~l~g-~~D~EGIa~--~~~g~~~vs~E~~~~l~~~~   97 (255)
T 3qqz_A           26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRT----IPLDF-VKDLETIEY--IGDNQFVISDERDYAIYVIS   97 (255)
T ss_dssp             CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEE----EECSS-CSSEEEEEE--CSTTEEEEEETTTTEEEEEE
T ss_pred             ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEE----EecCC-CCChHHeEE--eCCCEEEEEECCCCcEEEEE
Confidence            35799999999876677777788889888887 442211    11222 246778888  67887777766778899988


Q ss_pred             ccCCCCCc--cccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCC-CCCceeeec-------CCCCce
Q psy17342        198 LEMLSSPQ--ETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGN-KAGNVECYE-------GHEGPV  267 (401)
Q Consensus       198 ~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~-~~~~~~~~~-------~~~~~v  267 (401)
                      +.......  ....+.. ...........++|+ +.++.|+++.+.....+|..++. ....+..+.       .+...+
T Consensus        98 v~~~~~i~~~~~~~~~~-~~~~~N~g~EGLA~d-~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~  175 (255)
T 3qqz_A           98 LTPNSEVKILKKIKIPL-QESPTNCGFEGLAYS-RQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV  175 (255)
T ss_dssp             ECTTCCEEEEEEEECCC-SSCCCSSCCEEEEEE-TTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred             cCCCCeeeeeeeecccc-ccccccCCcceEEEe-CCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence            86533211  1111110 012345567899999 66666666666544444443321 000111111       123457


Q ss_pred             eeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC---------CceEEEEECCCCCcEEEEEecCCEEE
Q psy17342        268 VGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR---------DYVMDVQWSPINPALFATVEVAGRVD  338 (401)
Q Consensus       268 ~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------~~v~~v~~~~~~~~~l~~~~~d~~i~  338 (401)
                      .+++++|..     +.+++.....+.+.++|.. ++.+..+.-..         ...-.|+|.++|. ++++ ++-+.++
T Consensus       176 S~l~~dp~t-----g~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~n~~y  247 (255)
T 3qqz_A          176 SGAEFNQQK-----NTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEPNRFY  247 (255)
T ss_dssp             CEEEEETTT-----TEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETTTEEE
T ss_pred             eeEEEcCCC-----CeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE-cCCceEE
Confidence            889999986     6788888888899999965 66666655322         2567999999996 5554 6667666


Q ss_pred             EEeC
Q psy17342        339 LWNL  342 (401)
Q Consensus       339 iwd~  342 (401)
                      .+.-
T Consensus       248 ~f~~  251 (255)
T 3qqz_A          248 RFTP  251 (255)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            6643

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.59  E-value=5.7e-05  Score=66.36  Aligned_cols=222  Identities=9%  Similarity=-0.057  Sum_probs=134.4

Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      ...|+..++........       .........++|  .+ ++.++++-...+.|..+++...  ..... +..     .
T Consensus        95 ~~~I~~i~~~~~~~~~~-------~~~~~~~~gl~~--d~~~~~ly~~D~~~~~I~r~~~~g~--~~~~~-~~~-----~  157 (386)
T 3v65_B           95 RIDIRQVLPHRSEYTLL-------LNNLENAIALDF--HHRRELVFWSDVTLDRILRANLNGS--NVEEV-VST-----G  157 (386)
T ss_dssp             BSCEEEECTTSCCCEEE-------ECSCSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSC--CEEEE-ECS-----S
T ss_pred             CccceeeccCCCcEEEE-------ecCCCccEEEEE--ecCCCeEEEEeCCCCcEEEEecCCC--CcEEE-EeC-----C
Confidence            46788888876543221       122345778998  65 4555556566788888887642  11111 000     1


Q ss_pred             ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC-CeEEEE
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD-WSVKLW  297 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d-~~i~iw  297 (401)
                      ......+++.+..+.++++-...+.|.+.++.+...  ...+.........+++.|..     +.++++-... +.|..+
T Consensus       158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~--~~l~~~~l~~P~giavdp~~-----g~ly~td~~~~~~I~r~  230 (386)
T 3v65_B          158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--KVLLWQSLEKPRAIALHPME-----GTIYWTDWGNTPRIEAS  230 (386)
T ss_dssp             CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC--EEEECSSCSCEEEEEEETTT-----TEEEEEECSSSCEEEEE
T ss_pred             CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce--EEeecCCCCCCcEEEEEcCC-----CeEEEeccCCCCEEEEE
Confidence            123456777744556666667778899988875432  22223333456889999874     4556655445 678888


Q ss_pred             EeeCCCceEEE-eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEE
Q psy17342        298 NIKENKPVHSF-NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVG  376 (401)
Q Consensus       298 d~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  376 (401)
                      ++.. .....+ ...-...+.++++|++..++++-...+.|..+|+..... ..+.  .........+++ ..+.++++-
T Consensus       231 ~~dG-~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~--~~~~~~P~giav-~~~~ly~td  305 (386)
T 3v65_B          231 SMDG-SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVI--SQGLPHPFAITV-FEDSLYWTD  305 (386)
T ss_dssp             ETTS-CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEE--CSSCSSEEEEEE-ETTEEEEEE
T ss_pred             eCCC-CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEE--ECCCCCceEEEE-ECCEEEEee
Confidence            8754 333333 222345789999987766777777788999999875332 2221  122345667887 345566666


Q ss_pred             ecCCcEEEEEeccC
Q psy17342        377 DEKGAITMFDVGEV  390 (401)
Q Consensus       377 ~~dg~v~iw~~~~~  390 (401)
                      ...+.|..++..++
T Consensus       306 ~~~~~V~~~~~~~G  319 (386)
T 3v65_B          306 WHTKSINSANKFTG  319 (386)
T ss_dssp             TTTTEEEEEETTTC
T ss_pred             CCCCeEEEEECCCC
Confidence            66778888885555

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.57  E-value=3.2e-06  Score=80.04  Aligned_cols=285  Identities=9%  Similarity=-0.025  Sum_probs=146.9

Q ss_pred             EEEecC-CCCCeEEEEeccCCCCCC-CCCcEEEEEeCcCCCCCceEEEe--cCCCeeEEEEeCCCCceEEEEe-cCCeEE
Q psy17342         70 YMDWST-QHPELLLASYHRNKEAPN-EPDGVCLIWNTKFKKTTPEFEFF--CQSPVLSCCFAKFNPYLILGGT-YSGQIV  144 (401)
Q Consensus        70 ~~~~~~-~~~~l~~~~~~~~~~~~~-~~d~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~g~-~dg~v~  144 (401)
                      ++++.| +++.++.|++....+... .....+.+||..+++........  +.....++++.+++ .+++.|+ .+..+.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKKTS  268 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTCEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC-CEEEeCCCCCCceE
Confidence            566777 888888888532111100 01136899999887655443333  22334457777766 6777776 456899


Q ss_pred             EEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEe-CC-----CcEEEeeccCCCCCccccc--ccccccc
Q psy17342        145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS-ND-----GRLCSWSLEMLSSPQETRD--LQYNNKQ  216 (401)
Q Consensus       145 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d-----g~i~~wd~~~~~~~~~~~~--~~~~~~~  216 (401)
                      +||..+.+-.....    +...... .+++.  .+++..++.|+ .+     ..+.+||..+.. -.....  ...  ..
T Consensus       269 ~yd~~t~~W~~~~~----~~~~R~~-~s~~~--~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~-W~~~~~~~~~p--~~  338 (656)
T 1k3i_A          269 LYDSSSDSWIPGPD----MQVARGY-QSSAT--MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT-WTSLPNAKVNP--ML  338 (656)
T ss_dssp             EEEGGGTEEEECCC----CSSCCSS-CEEEE--CTTSCEEEECCCCCSSSCCCCEEEEETTTTE-EEEETTSCSGG--GC
T ss_pred             EecCcCCceeECCC----CCccccc-cceEE--ecCCeEEEEeCcccCCcccccceEeCCCCCc-ceeCCCccccc--cc
Confidence            99988764322211    1111111 23344  46888888888 34     468899986421 000000  000  00


Q ss_pred             CCccceEEEEeccCCCCeEEEEcCCc---------eEEEEeCCCCCCCceeeecCCC---------CceeeeecCccCCC
Q psy17342        217 TKNLAVLSLAFPQNDVNNFVVGCEDG---------NVYSACRHGNKAGNVECYEGHE---------GPVVGLSSHRAQGH  278 (401)
Q Consensus       217 ~~~~~v~~~~~~~~~~~~l~~~~~d~---------~i~~~~~~~~~~~~~~~~~~~~---------~~v~~i~~~~~~~~  278 (401)
                      ....   ...+. .++..++.|+.+|         .+..||......  ......+.         ..-.++.+....  
T Consensus       339 ~~~~---~~~~~-~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w--~~~~~~~~~~~~~~~~~~~~~av~~~~~~--  410 (656)
T 1k3i_A          339 TADK---QGLYR-SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD--VKSAGKRQSNRGVAPDAMCGNAVMYDAVK--  410 (656)
T ss_dssp             CCCT---TGGGT-TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE--EEEEEECEETTEECCCCBTCEEEEEETTT--
T ss_pred             cccc---cceee-cCCceEEEECCCCcEEEecCccceeeeecCCcce--eecCCccccccccCCCCCCCceEeccCCC--
Confidence            0000   01222 3455566665554         456677654321  11111111         111233332222  


Q ss_pred             CCCCcEEEEEeCCC-----------eEEEEEeeCCCceEEE--eecCCc-eEEEEECCCCCcEEEEEecC----------
Q psy17342        279 IDFSHLYLTSSYDW-----------SVKLWNIKENKPVHSF--NEFRDY-VMDVQWSPINPALFATVEVA----------  334 (401)
Q Consensus       279 ~~~~~~l~s~~~d~-----------~i~iwd~~~~~~~~~~--~~~~~~-v~~v~~~~~~~~~l~~~~~d----------  334 (401)
                         +++++.|+.++           .|.+||..+.+-....  ..+... -.+++..|+++ +++.|+.+          
T Consensus       411 ---~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~-i~v~GG~~~~~~~~~~~~  486 (656)
T 1k3i_A          411 ---GKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS-TFITGGQRRGIPFEDSTP  486 (656)
T ss_dssp             ---TEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC-EEEECCBSBCCTTCCCSB
T ss_pred             ---CeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCC-EEEECCcccCcCcCCCCc
Confidence               67888887543           6778887665432221  111222 23456678887 78888754          


Q ss_pred             -CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEec
Q psy17342        335 -GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDE  378 (401)
Q Consensus       335 -~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  378 (401)
                       ..+.+||..+.+-...... ...........+.|+|+.++.|+.
T Consensus       487 ~~~v~~ydp~t~~W~~~~~~-~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          487 VFTPEIYVPEQDTFYKQNPN-SIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCCCEEEEGGGTEEEECCCC-SSCCCTTEEEEECTTSCEEEEECC
T ss_pred             ccceEEEcCCCCceeecCCC-CCccccccHhhcCCCcEEEecCCC
Confidence             4689999876542111000 011122234556789999999985

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.57  E-value=0.00035  Score=67.65  Aligned_cols=292  Identities=11%  Similarity=-0.043  Sum_probs=165.8

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE------ecCCCeeEEEEeCCCCceEEEEec
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF------FCQSPVLSCCFAKFNPYLILGGTY  139 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~g~~  139 (401)
                      ..|.++...+++ .|..++          .+ -+.+||..+++.......      -....|.++...+++  .|..|+.
T Consensus       211 ~~i~~i~~d~~g-~lwigt----------~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g--~lWigt~  276 (781)
T 3v9f_A          211 NDVRCIYKDTNG-NIWIGT----------SK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN--KLWIATE  276 (781)
T ss_dssp             SSEEEEEECTTC-CEEEEE----------TT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTS--EEEEEES
T ss_pred             CceeEEEEcCCC-CEEEEe----------CC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCC--CEEEEeC
Confidence            568888888877 466666          34 688999875432211110      124578898887755  4555666


Q ss_pred             CCeEEEEECCCCCCCceee-------cc-ccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccc
Q psy17342        140 SGQIVLWDTRVQKKTPVHR-------TP-LSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQ  211 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~-------~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~  211 (401)
                      .+-|.+++..+........       .. .........|.++..  .+++. |-.|+.++-|..++....  ........
T Consensus       277 ~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~--D~~g~-lWigt~~~Gl~~~~~~~~--~~~~~~~~  351 (781)
T 3v9f_A          277 LNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQ--DSFNN-IWIGTWGGGINFISNAPP--TFHTWSYS  351 (781)
T ss_dssp             SSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEE--CSSCC-EEEEEBSSCEEEECSSCC--SCEEEC--
T ss_pred             CCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEE--eCCCC-EEEEecCCeEEEeCCCCC--cceeeccC
Confidence            4668899987655322111       00 001224567888877  66664 566676777888887531  11111100


Q ss_pred             c---ccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceee-ecCCCCceeeeecCccCCCCCCCcEEEE
Q psy17342        212 Y---NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVEC-YEGHEGPVVGLSSHRAQGHIDFSHLYLT  287 (401)
Q Consensus       212 ~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~~~l~s  287 (401)
                      .   .........|.++... ++ ..|.+|+.++-|..++........... .......|.++...+.      +. |..
T Consensus       352 ~~~~~~~~l~~~~v~~i~~d-~~-g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~------g~-lWi  422 (781)
T 3v9f_A          352 PTQMNESSLSNKVVSSVCDD-GQ-GKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSE------GN-LWF  422 (781)
T ss_dssp             --CCCSSCCSSSCEEEEEEC-TT-SCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTT------SC-EEE
T ss_pred             ccccccCCCCCcceEEEEEc-CC-CCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCC------CC-EEE
Confidence            0   0011123468888876 44 456677877778888875321111100 0123456888887765      44 444


Q ss_pred             EeCCCeEEEEEeeCCCceEEEe---ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee---cCCCCe
Q psy17342        288 SSYDWSVKLWNIKENKPVHSFN---EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV---EGAPAL  361 (401)
Q Consensus       288 ~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~v  361 (401)
                      |+.++-+..+|..+++. ..+.   .....|.++...+++. + ..|+. +-|..||..+++... +....   .....|
T Consensus       423 gt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~-l-wigt~-~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i  497 (781)
T 3v9f_A          423 GTYLGNISYYNTRLKKF-QIIELEKNELLDVRVFYEDKNKK-I-WIGTH-AGVFVIDLASKKVIH-HYDTSNSQLLENFV  497 (781)
T ss_dssp             EETTEEEEEECSSSCEE-EECCSTTTCCCCEEEEEECTTSE-E-EEEET-TEEEEEESSSSSCCE-EECTTTSSCSCSCE
T ss_pred             EeccCCEEEEcCCCCcE-EEeccCCCCCCeEEEEEECCCCC-E-EEEEC-CceEEEeCCCCeEEe-cccCccccccccee
Confidence            66667788888766543 2222   1245789999988885 4 44444 568899987654322 11100   013568


Q ss_pred             EEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        362 SRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       362 ~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      .++...++|.+.+.....| |..|+..+++
T Consensus       498 ~~i~~d~~g~lWigt~~~G-l~~~~~~~~~  526 (781)
T 3v9f_A          498 RSIAQDSEGRFWIGTFGGG-VGIYTPDMQL  526 (781)
T ss_dssp             EEEEECTTCCEEEEESSSC-EEEECTTCCE
T ss_pred             EEEEEcCCCCEEEEEcCCC-EEEEeCCCCe
Confidence            8999998888655433345 7778876653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.57  E-value=0.00014  Score=62.90  Aligned_cols=238  Identities=10%  Similarity=-0.033  Sum_probs=139.7

Q ss_pred             eeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeecc
Q psy17342        121 VLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLE  199 (401)
Q Consensus       121 v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~  199 (401)
                      .+|.+..+ .+.++++  ....|+..++........       .........++|  .+. +..+++-...+.|..+++.
T Consensus        36 ~~C~~~~~-~~~ll~~--~~~~I~~i~~~g~~~~~~-------~~~~~~~~~l~~--d~~~~~ly~~D~~~~~I~r~~~~  103 (349)
T 3v64_C           36 RSCKALGP-EPVLLFA--NRIDIRQVLPHRSEYTLL-------LNNLENAIALDF--HHRRELVFWSDVTLDRILRANLN  103 (349)
T ss_dssp             SCEEESSS-CCEEEEE--CBSCEEEECTTSCCEEEE-------ECSCSCEEEEEE--ETTTTEEEEEETTTTEEEEEETT
T ss_pred             Cccccccc-CceeEee--cccceEEEeCCCCeeEEe-------ecCCCceEEEEE--eccccEEEEEeccCCceEEEecC
Confidence            34444444 3234433  345677777765443211       122334788998  654 4455555567888888876


Q ss_pred             CCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCC
Q psy17342        200 MLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHI  279 (401)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  279 (401)
                      ... .....  .     ........+++.+..+.++++-...+.|.+.++.+...  .............+++.|..   
T Consensus       104 g~~-~~~~~--~-----~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--~~l~~~~l~~P~~iavdp~~---  170 (349)
T 3v64_C          104 GSN-VEEVV--S-----TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--KVLLWQSLEKPRAIALHPME---  170 (349)
T ss_dssp             SCS-CEEEE--C-----SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEECTTCSCEEEEEEETTT---
T ss_pred             CCC-ceEEE--e-----CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce--EEEEeCCCCCcceEEEecCc---
Confidence            421 11111  0     01224567888744556666667778999999875432  22222333456889999864   


Q ss_pred             CCCcEEEEEeCC-CeEEEEEeeCCCceEEEe-ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecC
Q psy17342        280 DFSHLYLTSSYD-WSVKLWNIKENKPVHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG  357 (401)
Q Consensus       280 ~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  357 (401)
                        +.++++-... +.|...++.. .....+. ..-...+.++++|++..++++-...+.|..+|+..... ..+.  ...
T Consensus       171 --g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~--~~~  244 (349)
T 3v64_C          171 --GTIYWTDWGNTPRIEASSMDG-SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVI--SQG  244 (349)
T ss_dssp             --TEEEEEECSSSCEEEEEETTS-CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE--CSS
T ss_pred             --CeEEEeccCCCCEEEEEeCCC-CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEEE--eCC
Confidence              5666665555 7888888753 3333332 22345789999987776777777778999999875332 2211  122


Q ss_pred             CCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        358 APALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       358 ~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      ......+++ ..+..+++-...+.|..++..++
T Consensus       245 ~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          245 LPHPFAITV-FEDSLYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred             CCCceEEEE-ECCEEEEecCCCCeEEEEEccCC
Confidence            344667777 34555566666777888875454

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.56  E-value=1.3e-05  Score=64.22  Aligned_cols=194  Identities=10%  Similarity=0.018  Sum_probs=121.0

Q ss_pred             CcEEEEEEeecCCceEEEEEeCCC--cEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEE
Q psy17342        168 HPVFCMSVIGTQNAHNLISISNDG--RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVY  245 (401)
Q Consensus       168 ~~v~~~~~~~~~~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~  245 (401)
                      .-...+.|  +. +.++.+.+.+|  .|+.+|+.++. ......+..     +. ---.+++.  .+...+..-.++.+.
T Consensus        21 ~ftqGL~~--~~-~~LyestG~~g~S~v~~vD~~tgk-v~~~~~l~~-----~~-fgeGi~~~--~~~ly~ltw~~~~v~   88 (243)
T 3mbr_X           21 AFTEGLFY--LR-GHLYESTGETGRSSVRKVDLETGR-ILQRAEVPP-----PY-FGAGIVAW--RDRLIQLTWRNHEGF   88 (243)
T ss_dssp             CCEEEEEE--ET-TEEEEEECCTTSCEEEEEETTTCC-EEEEEECCT-----TC-CEEEEEEE--TTEEEEEESSSSEEE
T ss_pred             cccccEEE--EC-CEEEEECCCCCCceEEEEECCCCC-EEEEEeCCC-----Cc-ceeEEEEe--CCEEEEEEeeCCEEE
Confidence            34668888  54 66677777754  89999998632 333322221     11 11223433  345555666789999


Q ss_pred             EEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC-----CceEEEEE
Q psy17342        246 SACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR-----DYVMDVQW  320 (401)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~v~~  320 (401)
                      ++|..+  .+.+.++..... -..++  ++      +..|+.+..+++|.++|..+.+.+.++....     ..++.+.|
T Consensus        89 v~D~~t--l~~~~ti~~~~~-Gwglt--~d------g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~  157 (243)
T 3mbr_X           89 VYDLAT--LTPRARFRYPGE-GWALT--SD------DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW  157 (243)
T ss_dssp             EEETTT--TEEEEEEECSSC-CCEEE--EC------SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             EEECCc--CcEEEEEeCCCC-ceEEe--eC------CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE
Confidence            999874  345666553222 23444  44      3444444558899999999998888876522     34567777


Q ss_pred             CCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee----------cCCCCeEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342        321 SPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV----------EGAPALSRVTWTPNGTQLCVGDEKGAITMFDV  387 (401)
Q Consensus       321 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~  387 (401)
                      . +|. +++..-.+..|.+.|.++++.+..+...-          ......+.++++|+++.|++.+.-- =++|.+
T Consensus       158 ~-~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w-p~~~~v  231 (243)
T 3mbr_X          158 V-NGE-LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW-PMLYEI  231 (243)
T ss_dssp             E-TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC-SEEEEE
T ss_pred             e-CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC-CcEEEE
Confidence            6 554 67766678899999999988766655320          1224678999999877776666432 334444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.55  E-value=8.7e-05  Score=62.97  Aligned_cols=235  Identities=11%  Similarity=0.004  Sum_probs=129.4

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC-C-eE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS-G-QI  143 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d-g-~v  143 (401)
                      .....++|+|+++ |..+..         .++.|..||.+. ...  ........+..+++.+++ +++++.... + .|
T Consensus        32 ~~pegia~~~~g~-lyv~d~---------~~~~I~~~d~~g-~~~--~~~~~~~~p~gia~~~dG-~l~vad~~~~~~~v   97 (306)
T 2p4o_A           32 TFLENLASAPDGT-IFVTNH---------EVGEIVSITPDG-NQQ--IHATVEGKVSGLAFTSNG-DLVATGWNADSIPV   97 (306)
T ss_dssp             CCEEEEEECTTSC-EEEEET---------TTTEEEEECTTC-CEE--EEEECSSEEEEEEECTTS-CEEEEEECTTSCEE
T ss_pred             CCcceEEECCCCC-EEEEeC---------CCCeEEEECCCC-ceE--EEEeCCCCceeEEEcCCC-cEEEEeccCCcceE
Confidence            4577899999987 444442         578999999874 222  222334678899999987 455544322 2 46


Q ss_pred             EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcc--ccccccccccCCccc
Q psy17342        144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQE--TRDLQYNNKQTKNLA  221 (401)
Q Consensus       144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~  221 (401)
                      ..++..+++......    . ........++.  .+++..+++-..++.|..+|.........  ...+........-..
T Consensus        98 ~~~d~~~g~~~~~~~----~-~~~~~~~g~~~--~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (306)
T 2p4o_A           98 VSLVKSDGTVETLLT----L-PDAIFLNGITP--LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  170 (306)
T ss_dssp             EEEECTTSCEEEEEE----C-TTCSCEEEEEE--SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             EEEcCCCCeEEEEEe----C-CCccccCcccc--cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence            666766655322211    1 11222344554  44555555555688888888653100000  000000000011122


Q ss_pred             eEEEEeccCCCCeE-EEEcCCceEEEEeCCCC-CCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        222 VLSLAFPQNDVNNF-VVGCEDGNVYSACRHGN-KAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       222 v~~~~~~~~~~~~l-~~~~~d~~i~~~~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      ...+  + +++..| ++-...+.|+.++.... .......+. .......+++.++      ++++++....+.|.++|.
T Consensus       171 pngi--s-~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~d------G~l~va~~~~~~V~~~~~  240 (306)
T 2p4o_A          171 ANGL--K-RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVE------GNLYGATHIYNSVVRIAP  240 (306)
T ss_dssp             EEEE--E-EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTT------CCEEEECBTTCCEEEECT
T ss_pred             CCCc--C-cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCC------CCEEEEeCCCCeEEEECC
Confidence            3444  5 556554 55566788999998641 111112221 1133567788887      677777777789999996


Q ss_pred             eCCCceE--EEeecCCceEEEEEC---CCCCcEEEEEe
Q psy17342        300 KENKPVH--SFNEFRDYVMDVQWS---PINPALFATVE  332 (401)
Q Consensus       300 ~~~~~~~--~~~~~~~~v~~v~~~---~~~~~~l~~~~  332 (401)
                      . ++...  .+...-....+++|.   |+++.++++..
T Consensus       241 ~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          241 D-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             T-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             C-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            4 55432  222223568899998   88775655554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.54  E-value=1.4e-05  Score=73.98  Aligned_cols=275  Identities=11%  Similarity=-0.002  Sum_probs=145.6

Q ss_pred             CcEEEEEeC-cCCCCCceEEEecCC----------CeeEEEEeCCCCc---eEEEEecCCeEEEEECCCCCCCceeeccc
Q psy17342         96 DGVCLIWNT-KFKKTTPEFEFFCQS----------PVLSCCFAKFNPY---LILGGTYSGQIVLWDTRVQKKTPVHRTPL  161 (401)
Q Consensus        96 d~~v~iwd~-~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~---~l~~g~~dg~v~iw~~~~~~~~~~~~~~~  161 (401)
                      ++.|.-+|. ++++.+=++......          ....+++.|.+..   .++.++.|+.|..+|..+++..-.....-
T Consensus        72 ~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~  151 (599)
T 1w6s_A           72 PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSD  151 (599)
T ss_dssp             TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred             CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCC
Confidence            678888888 777655433322110          0123455443322   26777789999999999887643322100


Q ss_pred             cccCCCCcEEE-EEEeecCCceEEEEEe------CCCcEEEeeccCCCCCccccccccccc-------------------
Q psy17342        162 SVMAHTHPVFC-MSVIGTQNAHNLISIS------NDGRLCSWSLEMLSSPQETRDLQYNNK-------------------  215 (401)
Q Consensus       162 ~~~~~~~~v~~-~~~~~~~~~~~l~s~~------~dg~i~~wd~~~~~~~~~~~~~~~~~~-------------------  215 (401)
                        ......+.+ -.+   .++ .++.++      .+|.|.-+|.+++.. .-.........                   
T Consensus       152 --~~~~~~~~ssP~v---~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~-~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~  224 (599)
T 1w6s_A          152 --IKVGSTLTIAPYV---VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQ-VWRAYATGPDKDLLLASDFNIKNPHYGQKG  224 (599)
T ss_dssp             --GGGTCBCCSCCEE---ETT-EEEECCBCGGGTCCCEEEEEETTTCCE-EEEEESSSCHHHHTBCTTTTTTCGGGCCTT
T ss_pred             --CCccceeecCCEE---ECC-EEEEEecccccCCCCeEEEEECCCCcE-EEEEcCCCCccccccccccccccccccccc
Confidence              000001111 011   133 344443      378888888876331 11111100000                   


Q ss_pred             -----------cCCccce-EEEEeccCCCCeEEEEcCC----------------ceEEEEeCCCCCCCceeeecC--CCC
Q psy17342        216 -----------QTKNLAV-LSLAFPQNDVNNFVVGCED----------------GNVYSACRHGNKAGNVECYEG--HEG  265 (401)
Q Consensus       216 -----------~~~~~~v-~~~~~~~~~~~~l~~~~~d----------------~~i~~~~~~~~~~~~~~~~~~--~~~  265 (401)
                                 ..-...+ ..+++. +....++.++.+                +.|..+|..+.+  .+-.++.  |..
T Consensus       225 ~g~~tw~g~~~~~gg~~~W~~~a~d-~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~--~~W~~q~~~~d~  301 (599)
T 1w6s_A          225 LGTGTWEGDAWKIGGGTNWGWYAYD-PGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE--AKFGYQKTPHDE  301 (599)
T ss_dssp             HHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC--EEEEEESSTTCS
T ss_pred             cccccCCCcceecCCCccccceeEe-CCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc--eeeEeecCCCcc
Confidence                       0000001 134455 456677777655                378888887443  3433332  211


Q ss_pred             --------ceeeeecC-ccCCCCCCC---cEEEEEeCCCeEEEEEeeCCCceEEEeecC-------------Cce-----
Q psy17342        266 --------PVVGLSSH-RAQGHIDFS---HLYLTSSYDWSVKLWNIKENKPVHSFNEFR-------------DYV-----  315 (401)
Q Consensus       266 --------~v~~i~~~-~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~v-----  315 (401)
                              ++. +... .+      +   ..++.++.+|.+.++|.++++++.......             .++     
T Consensus       302 wd~d~~~~p~l-~d~~~~~------G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~  374 (599)
T 1w6s_A          302 WDYAGVNVMML-SEQKDKD------GKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEY  374 (599)
T ss_dssp             SCCCCCCCCEE-EEEECTT------SCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGG
T ss_pred             ccccCCCccEE-EeccccC------CcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeecccc
Confidence                    111 1111 12      3   567778899999999999999887665211             111     


Q ss_pred             ---------------------EEEEECCCCCcEEEEE---------------------------------e------cCC
Q psy17342        316 ---------------------MDVQWSPINPALFATV---------------------------------E------VAG  335 (401)
Q Consensus       316 ---------------------~~v~~~~~~~~~l~~~---------------------------------~------~d~  335 (401)
                                           ..++++|+.. ++++.                                 +      .+|
T Consensus       375 ~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G  453 (599)
T 1w6s_A          375 GTRMDHLAKDICPSAMGYHNQGHDSYDPKRE-LFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLG  453 (599)
T ss_dssp             CCCTTCCEEEESSCTTCSSCSCBCEEETTTT-EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCE
T ss_pred             CCCCCCCccEeccCcccccCCCCccCCCCCC-EEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcC
Confidence                                 1356677655 33321                                 1      347


Q ss_pred             EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCcc
Q psy17342        336 RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGI  392 (401)
Q Consensus       336 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~  392 (401)
                      .|..||+.+++.+.....  .  .+...-.....+..++.++.||.++.||.+++++
T Consensus       454 ~l~A~D~~tG~~~W~~~~--~--~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~  506 (599)
T 1w6s_A          454 QIKAYNAITGDYKWEKME--R--FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDL  506 (599)
T ss_dssp             EEEEECTTTCCEEEEEEE--S--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             eEEEEECCCCCEEeEecC--C--CCccCcceEecCCEEEEECCCCeEEEEECCCCCE
Confidence            889999998876555432  1  1111111223567788899999999999999963

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.53  E-value=8e-05  Score=63.20  Aligned_cols=231  Identities=13%  Similarity=0.070  Sum_probs=129.0

Q ss_pred             CCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC--cEEEe
Q psy17342        119 SPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG--RLCSW  196 (401)
Q Consensus       119 ~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~~w  196 (401)
                      .....++|.+++ +++++-..++.|..||...... ..       .........+++  .+++.++++.....  .|..+
T Consensus        32 ~~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~~~-~~-------~~~~~~p~gia~--~~dG~l~vad~~~~~~~v~~~  100 (306)
T 2p4o_A           32 TFLENLASAPDG-TIFVTNHEVGEIVSITPDGNQQ-IH-------ATVEGKVSGLAF--TSNGDLVATGWNADSIPVVSL  100 (306)
T ss_dssp             CCEEEEEECTTS-CEEEEETTTTEEEEECTTCCEE-EE-------EECSSEEEEEEE--CTTSCEEEEEECTTSCEEEEE
T ss_pred             CCcceEEECCCC-CEEEEeCCCCeEEEECCCCceE-EE-------EeCCCCceeEEE--cCCCcEEEEeccCCcceEEEE
Confidence            567889999976 5666666788999998765321 11       112346788888  88888666554333  35555


Q ss_pred             eccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCcee--------eecCCCCcee
Q psy17342        197 SLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVE--------CYEGHEGPVV  268 (401)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~--------~~~~~~~~v~  268 (401)
                      +.... .........      .......++.. +++..+++-..++.|+.+|..........        .....-...+
T Consensus       101 d~~~g-~~~~~~~~~------~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn  172 (306)
T 2p4o_A          101 VKSDG-TVETLLTLP------DAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN  172 (306)
T ss_dssp             ECTTS-CEEEEEECT------TCSCEEEEEES-SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred             cCCCC-eEEEEEeCC------CccccCccccc-CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC
Confidence            64431 111111111      11122334434 44444555556889999987532111100        0001111233


Q ss_pred             eeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC-CCc--eEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC
Q psy17342        269 GLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE-NKP--VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD  345 (401)
Q Consensus       269 ~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~--~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~  345 (401)
                      .+  +|+.     +.++++-...+.|..+++.. ++.  ...+.. ......++++++|. ++++....+.|.++|.. +
T Consensus       173 gi--s~dg-----~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~-G  242 (306)
T 2p4o_A          173 GL--KRFG-----NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN-LYGATHIYNSVVRIAPD-R  242 (306)
T ss_dssp             EE--EEET-----TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC-EEEECBTTCCEEEECTT-C
T ss_pred             Cc--CcCC-----CEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCC-EEEEeCCCCeEEEECCC-C
Confidence            44  5652     34556666678999999874 322  222222 23456789999996 66666667889999875 4


Q ss_pred             CCCcceEEeecCCCCeEEEEec---CCCcEEEEEecC
Q psy17342        346 TEVPATSAIVEGAPALSRVTWT---PNGTQLCVGDEK  379 (401)
Q Consensus       346 ~~~~~~~~~~~~~~~v~~~~~s---~~g~~l~~~~~d  379 (401)
                      +....... .......++++|.   |+++.|++.+..
T Consensus       243 ~~~~~~~~-~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          243 STTIIAQA-EQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             CEEEEECG-GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CEEEEeec-ccccCCceEEEEecccCCCCEEEEECCC
Confidence            32111111 1123568899998   898777766543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.50  E-value=0.00037  Score=59.32  Aligned_cols=227  Identities=8%  Similarity=-0.070  Sum_probs=137.1

Q ss_pred             CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCC----CCCceeeccccccCCCCcEE
Q psy17342         96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQ----KKTPVHRTPLSVMAHTHPVF  171 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~----~~~~~~~~~~~~~~~~~~v~  171 (401)
                      ...|+..|+.+....  ........+..++|.+.+..+.++-..++.|..+++...    .....      +...-....
T Consensus         9 ~~~I~~i~~~~~~~~--~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~------~~~~~~~p~   80 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYT--SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV------ISRDIQAPD   80 (316)
T ss_dssp             BSSEEEEETTSCCCE--EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE------ECSSCSCCC
T ss_pred             CCeEEEEECCCcceE--ehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE------EeCCCCCcC
Confidence            567889999865433  233445678899999876567777667789999998762    11111      111123346


Q ss_pred             EEEEeecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC-ceEEEEeC
Q psy17342        172 CMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED-GNVYSACR  249 (401)
Q Consensus       172 ~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~~~~  249 (401)
                      .+++  .+ .+..+++-...+.|.+.++..  ...... ..     ........++++|..+.++++.... +.|...++
T Consensus        81 glav--d~~~~~ly~~d~~~~~I~~~~~~g--~~~~~~-~~-----~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~  150 (316)
T 1ijq_A           81 GLAV--DWIHSNIYWTDSVLGTVSVADTKG--VKRKTL-FR-----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  150 (316)
T ss_dssp             EEEE--ETTTTEEEEEETTTTEEEEEETTS--SSEEEE-EE-----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             EEEE--eecCCeEEEEECCCCEEEEEeCCC--CceEEE-EE-----CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC
Confidence            7777  54 455556666788899998763  111111 11     1223568899994344444444443 78988888


Q ss_pred             CCCCCCceeee-cCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee---cCCceEEEEECCCCC
Q psy17342        250 HGNKAGNVECY-EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE---FRDYVMDVQWSPINP  325 (401)
Q Consensus       250 ~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~v~~~~~~~  325 (401)
                      .+..   ...+ ...-...+.++++|..     +.++++-+..+.|..+|+.. .....+..   ......++++.. + 
T Consensus       151 dG~~---~~~~~~~~~~~P~gla~d~~~-----~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~~-~-  219 (316)
T 1ijq_A          151 NGVD---IYSLVTENIQWPNGITLDLLS-----GRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFE-D-  219 (316)
T ss_dssp             TSCC---EEEEECSSCSCEEEEEEETTT-----TEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEET-T-
T ss_pred             CCCC---eEEEEECCCCCceEEEEeccC-----CEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEEC-C-
Confidence            6543   2222 2223456789999874     45666666678999999864 33344432   123467788853 4 


Q ss_pred             cEEEEEecCCEEEEEeCCCCCCCcce
Q psy17342        326 ALFATVEVAGRVDLWNLNLDTEVPAT  351 (401)
Q Consensus       326 ~~l~~~~~d~~i~iwd~~~~~~~~~~  351 (401)
                      .++++-...+.|..++..+++....+
T Consensus       220 ~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          220 KVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEEEECCCCeEEEEeCCCCcceEEE
Confidence            47777777889999998766654433

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.48  E-value=0.00056  Score=60.30  Aligned_cols=229  Identities=10%  Similarity=-0.004  Sum_probs=135.7

Q ss_pred             cCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCccccccccccccC
Q psy17342        139 YSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT  217 (401)
Q Consensus       139 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  217 (401)
                      ....|+..++........       ......+..++|  .+. +..+++-...+.|..+++...........+    ...
T Consensus        90 ~~~~I~~i~l~~~~~~~~-------~~~~~~~~~l~~--d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~----~~~  156 (400)
T 3p5b_L           90 NRHEVRKMTLDRSEYTSL-------IPNLRNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV----ISR  156 (400)
T ss_dssp             ETTEEEEECTTSCSCEEE-------ECSCSCEEEEEE--ETTTTEEEEEETTTTEEEEEEC------CCCEEE----ECS
T ss_pred             ccceeEEEccCCcceeEe-------ccccCcceEEee--eeccCceEEEecCCCeEEEEEcccCCCCCcceEE----EeC
Confidence            357888888876653321       233456789999  654 445555556778888887641100001111    011


Q ss_pred             CccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC-CCeEEE
Q psy17342        218 KNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DWSVKL  296 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~~i~i  296 (401)
                      .......+++.+..++++++-...+.|.+.++.+...  ...+.........|++.|..     +.++++-.. .+.|..
T Consensus       157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~--~~l~~~~~~~P~~iavdp~~-----g~ly~td~~~~~~I~~  229 (400)
T 3p5b_L          157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KTLFRENGSKPRAIVVDPVH-----GFMYWTDWGTPAKIKK  229 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE--EEEEECSSCCEEEEEEETTT-----TEEEEEECSSSCCEEE
T ss_pred             CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce--EEEEeCCCCCcceEEEeccc-----CeEEEEeCCCCCEEEE
Confidence            2335678888844566666777788999999875432  22222233456889999874     455555433 367888


Q ss_pred             EEeeCCCceEEE-eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEE
Q psy17342        297 WNIKENKPVHSF-NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCV  375 (401)
Q Consensus       297 wd~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  375 (401)
                      .++.. .....+ ...-...+.|+++|++..++++-...+.|..+|+..... ..+......-.....+++. .+.++++
T Consensus       230 ~~~dG-~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~-~~~lywt  306 (400)
T 3p5b_L          230 GGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWT  306 (400)
T ss_dssp             EETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE-TTEEEEE
T ss_pred             EeCCC-CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe-CCEEEEe
Confidence            88754 333333 332356789999988776777666778999999875432 2222111112345567763 3455566


Q ss_pred             EecCCcEEEEEeccC
Q psy17342        376 GDEKGAITMFDVGEV  390 (401)
Q Consensus       376 ~~~dg~v~iw~~~~~  390 (401)
                      -...+.|..++..++
T Consensus       307 d~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          307 DIINEAIFSANRLTG  321 (400)
T ss_dssp             ESSSCSEEEEESSSC
T ss_pred             cCCCCeEEEEEcCCC
Confidence            666788988886665

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.48  E-value=5.3e-05  Score=70.27  Aligned_cols=106  Identities=11%  Similarity=0.042  Sum_probs=69.8

Q ss_pred             cEEEEEeCCCeEEEEEeeCCCceEEEeecCC-------------ce--------------------------------EE
Q psy17342        283 HLYLTSSYDWSVKLWNIKENKPVHSFNEFRD-------------YV--------------------------------MD  317 (401)
Q Consensus       283 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-------------~v--------------------------------~~  317 (401)
                      ..++.++.+|.++++|.++++.+..+.....             ++                                ..
T Consensus       337 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~  416 (582)
T 1flg_A          337 KATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNP  416 (582)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSC
T ss_pred             EEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCC
Confidence            4788899999999999999998876654220             00                                13


Q ss_pred             EEECCCCCcEEEEEe--------------------------------cCCEEEEEeCCCCCCCcceEEeecCCCCeEEEE
Q psy17342        318 VQWSPINPALFATVE--------------------------------VAGRVDLWNLNLDTEVPATSAIVEGAPALSRVT  365 (401)
Q Consensus       318 v~~~~~~~~~l~~~~--------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  365 (401)
                      ++++|+...+++...                                .+|.|..||+.+++.+.....  ..  ++..-.
T Consensus       417 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~--~~--~~~~g~  492 (582)
T 1flg_A          417 MAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKE--HL--PLWAGV  492 (582)
T ss_dssp             CEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEE--SS--CCCSCC
T ss_pred             ceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecC--CC--CCcccc
Confidence            456666553333221                                257899999999886655432  21  111111


Q ss_pred             ecCCCcEEEEEecCCcEEEEEeccCcc
Q psy17342        366 WTPNGTQLCVGDEKGAITMFDVGEVGI  392 (401)
Q Consensus       366 ~s~~g~~l~~~~~dg~v~iw~~~~~~~  392 (401)
                      ....+.+++.++.||.++.||.+++++
T Consensus       493 ~~tagglvf~g~~dg~l~A~D~~tG~~  519 (582)
T 1flg_A          493 LATAGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             eEeCCCEEEEECCCCcEEEEECCCCCE
Confidence            222466788899999999999999953

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.44  E-value=2.6e-05  Score=63.11  Aligned_cols=186  Identities=11%  Similarity=0.047  Sum_probs=111.1

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCC--cEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPD--GVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQI  143 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d--~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v  143 (401)
                      .-...+.|+ ++..+.+.+          .+  +.|+++|+++++.+.+..+.  .........+++..+.+..-.++.+
T Consensus        43 ~ftqGL~~~-~~~LyestG----------~~g~S~v~~vD~~Tgkv~~~~~l~--~~~FgeGit~~g~~ly~ltw~~~~v  109 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTG----------LNGRSSIRKVDIESGKTLQQIELG--KRYFGEGISDWKDKIVGLTWKNGLG  109 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEE----------ETTEEEEEEECTTTCCEEEEEECC--TTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             cccceEEEE-CCEEEEECC----------CCCCceEEEEECCCCcEEEEEecC--CccceeEEEEeCCEEEEEEeeCCEE
Confidence            335778898 665555555          33  49999999999887766554  3343332333354555555678999


Q ss_pred             EEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc-cce
Q psy17342        144 VLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN-LAV  222 (401)
Q Consensus       144 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~v  222 (401)
                      .+||..+.+......    ...   .-..+++    ++..|+.+..++.|.++|..+.. ....+....   .+.. ..+
T Consensus       110 ~v~D~~t~~~~~ti~----~~~---eG~glt~----dg~~L~~SdGs~~i~~iDp~T~~-v~~~I~V~~---~g~~~~~l  174 (262)
T 3nol_A          110 FVWNIRNLRQVRSFN----YDG---EGWGLTH----NDQYLIMSDGTPVLRFLDPESLT-PVRTITVTA---HGEELPEL  174 (262)
T ss_dssp             EEEETTTCCEEEEEE----CSS---CCCCEEE----CSSCEEECCSSSEEEEECTTTCS-EEEEEECEE---TTEECCCE
T ss_pred             EEEECccCcEEEEEE----CCC---CceEEec----CCCEEEEECCCCeEEEEcCCCCe-EEEEEEecc---CCcccccc
Confidence            999999877543322    112   2234544    66777776667889999987633 222222211   0011 234


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC------------CCCceeeeecCccCCCCCCCcEEEEE
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG------------HEGPVVGLSSHRAQGHIDFSHLYLTS  288 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~------------~~~~v~~i~~~~~~~~~~~~~~l~s~  288 (401)
                      ..+.|.  ++...+..-.+..|.+.|..+.+  .+..+..            .....+.|+++|..     ..++++|
T Consensus       175 NELe~~--~G~lyan~w~~~~I~vIDp~tG~--V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~-----~~lfVTG  243 (262)
T 3nol_A          175 NELEWV--DGEIFANVWQTNKIVRIDPETGK--VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEH-----HRLFVTG  243 (262)
T ss_dssp             EEEEEE--TTEEEEEETTSSEEEEECTTTCB--EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTT-----TEEEEEE
T ss_pred             ceeEEE--CCEEEEEEccCCeEEEEECCCCc--EEEEEECCcCccccccccCcCCceEEEEEcCCC-----CEEEEEC
Confidence            456665  56666555578889998887443  3333321            12345889999984     4555555

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.42  E-value=3.1e-05  Score=71.75  Aligned_cols=81  Identities=11%  Similarity=-0.032  Sum_probs=51.7

Q ss_pred             CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC
Q psy17342        291 DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG  370 (401)
Q Consensus       291 d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  370 (401)
                      ++.|..||+.+++.+.++... ..+.+..+...+. +++.++.|+.|+.+|.++++.+..+..  +....-.-+.+..+|
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg-~v~~g~~dg~l~a~D~~tG~~lw~~~~--~~~~~~~p~~~~~~G  518 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGG-LVWYATLDGYLKALDNKDGKELWNFKM--PSGGIGSPMTYSFKG  518 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEEC--SSCCCSCCEEEEETT
T ss_pred             CCeEEEEECCCCCEEEEecCC-CCccceeEEECCC-EEEEEcCCCeEEEEECCCCCEEEEEeC--CCCcEeeeEEEEECC
Confidence            578999999999988887652 2233222222344 566688999999999999987766543  221111223455777


Q ss_pred             cEEEE
Q psy17342        371 TQLCV  375 (401)
Q Consensus       371 ~~l~~  375 (401)
                      +.++.
T Consensus       519 ~~yv~  523 (571)
T 2ad6_A          519 KQYIG  523 (571)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            65543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.41  E-value=0.00025  Score=65.73  Aligned_cols=80  Identities=15%  Similarity=0.094  Sum_probs=51.9

Q ss_pred             CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC
Q psy17342        291 DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG  370 (401)
Q Consensus       291 d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  370 (401)
                      ++.|..||+.+++.+.+..... ++..-.....+. +++.++.|+.++.||.++++.+..+..  +....-.-+.+..+|
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagg-lvf~g~~dg~l~A~D~~tG~~lW~~~~--~~g~~a~P~~y~~~G  540 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQT--GSGIVSPPITWEQDG  540 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEEC--SSCCCSCCEEEEETT
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEeCCC-EEEEECCCCcEEEEECCCCCEEEEecC--CCCcccCceEEEECC
Confidence            5889999999999887776532 222111112243 667789999999999999998776654  222111225666788


Q ss_pred             cEEE
Q psy17342        371 TQLC  374 (401)
Q Consensus       371 ~~l~  374 (401)
                      +..+
T Consensus       541 ~qYv  544 (582)
T 1flg_A          541 EQYL  544 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.36  E-value=0.0011  Score=58.30  Aligned_cols=232  Identities=7%  Similarity=-0.093  Sum_probs=138.0

Q ss_pred             CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEE
Q psy17342         96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV  175 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  175 (401)
                      ...|+..++.....  .........+..++|.+.+..+.++-...+.|..+++..........  ............+++
T Consensus        91 ~~~I~~i~l~~~~~--~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~--~~~~~~~~~p~glav  166 (400)
T 3p5b_L           91 RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDIQAPDGLAV  166 (400)
T ss_dssp             TTEEEEECTTSCSC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCE--EEECSSCSCEEEEEE
T ss_pred             cceeEEEccCCcce--eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcce--EEEeCCCCCcccEEE
Confidence            67899999885433  23344567889999998765666666667889999887532100000  011223345678887


Q ss_pred             eecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC-CceEEEEeCCCCC
Q psy17342        176 IGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE-DGNVYSACRHGNK  253 (401)
Q Consensus       176 ~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~  253 (401)
                        .. .+.++++-...+.|.+.+++.  ...... +.     ........|++.|..+.++++-.. .+.|+..++.+..
T Consensus       167 --D~~~~~lY~~d~~~~~I~~~~~~g--~~~~~l-~~-----~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~  236 (400)
T 3p5b_L          167 --DWIHSNIYWTDSVLGTVSVADTKG--VKRKTL-FR-----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  236 (400)
T ss_dssp             --ETTTTEEEEEETTTTEEEEECTTT--CSEEEE-EE-----CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred             --EecCCceEEEECCCCeEEEEeCCC--CceEEE-Ee-----CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence              55 555666666778888888763  111111 11     122357889999434444444323 4788888887543


Q ss_pred             CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee---cCCceEEEEECCCCCcEEEE
Q psy17342        254 AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE---FRDYVMDVQWSPINPALFAT  330 (401)
Q Consensus       254 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~v~~~~~~~~~l~~  330 (401)
                      .  .......-...+.|+++|..     +.++++-...+.|..+|+... ....+..   ......++++..  ..++.+
T Consensus       237 ~--~~~~~~~l~~P~glavd~~~-----~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~l~~P~gl~v~~--~~lywt  306 (400)
T 3p5b_L          237 I--YSLVTENIQWPNGITLDLLS-----GRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFE--DKVFWT  306 (400)
T ss_dssp             C--EEEECSSCSCEEEEEEETTT-----TEEEEEETTTTEEEEEETTSC-CCEEEEECSSTTSSEEEEEEET--TEEEEE
T ss_pred             c--EEEEECCCCceEEEEEEeCC-----CEEEEEECCCCEEEEEeCCCC-ccEEEEeCCCCCCCCEEEEEeC--CEEEEe
Confidence            2  12222233456889999874     455555556788999998643 3333322   123456777743  347777


Q ss_pred             EecCCEEEEEeCCCCCCCcce
Q psy17342        331 VEVAGRVDLWNLNLDTEVPAT  351 (401)
Q Consensus       331 ~~~d~~i~iwd~~~~~~~~~~  351 (401)
                      -...+.|..+|..+++....+
T Consensus       307 d~~~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          307 DIINEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             ESSSCSEEEEESSSCCCCEEE
T ss_pred             cCCCCeEEEEEcCCCCceEEE
Confidence            777788999997777655443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.35  E-value=0.00094  Score=66.80  Aligned_cols=144  Identities=13%  Similarity=0.129  Sum_probs=84.0

Q ss_pred             CCeEEEEc----------CCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342        232 VNNFVVGC----------EDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE  301 (401)
Q Consensus       232 ~~~l~~~~----------~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  301 (401)
                      ..++++|+          ..|.|++|++...+.+.+... ...++|++++--.       + +|++|- ..+|++|++..
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~-~v~g~v~al~~~~-------g-~Lla~i-g~~l~vy~l~~  913 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK-EVKGAVYSMVEFN-------G-KLLASI-NSTVRLYEWTT  913 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE-EESSCEEEEEEET-------T-EEEEEE-TTEEEEEEECT
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE-EcCCcCEEEeeeC-------C-EEEEEc-CCEEEEEECCC
Confidence            56888886          458899998864333333222 2467888876432       4 444444 58999999987


Q ss_pred             CCceEE-EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC-CcceEEeecCCCCeEEEEecCCCcEEEEEecC
Q psy17342        302 NKPVHS-FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE-VPATSAIVEGAPALSRVTWTPNGTQLCVGDEK  379 (401)
Q Consensus       302 ~~~~~~-~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  379 (401)
                      .+.+.. ...+. .|..+.....+. +++.|..-..+.+...+.... +..+. .......++++.|-.++ .++.+..+
T Consensus       914 ~~~L~~~~~~~~-~i~~~~l~~~~~-~I~vgD~~~Sv~~~~y~~~~~~L~~~a-~D~~~~~vta~~~ld~~-t~l~aD~~  989 (1158)
T 3ei3_A          914 EKELRTECNHYN-NIMALYLKTKGD-FILVGDLMRSVLLLAYKPMEGNFEEIA-RDFNPNWMSAVEILDDD-NFLGAENA  989 (1158)
T ss_dssp             TSCEEEEEEECC-CSCEEEEEEETT-EEEEEESSBCEEEEEEETTTTEEEEEE-ECCSCBCEEEEEEEETT-EEEEEETT
T ss_pred             CceEEEEeeccc-cEEEEEEeccCC-EEEEEEhhheEEEEEEEcCCCeEEEEE-eecccccEEEEEEEccC-cEEEEcCC
Confidence            654441 11121 122222323344 677776656666655433221 11111 12234568888886554 67779999


Q ss_pred             CcEEEEEecc
Q psy17342        380 GAITMFDVGE  389 (401)
Q Consensus       380 g~v~iw~~~~  389 (401)
                      |.+.+.....
T Consensus       990 gNl~vl~~~~  999 (1158)
T 3ei3_A          990 FNLFVCQKDS  999 (1158)
T ss_dssp             SEEEEEEECT
T ss_pred             CcEEEEecCC
Confidence            9999998865

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.35  E-value=0.00026  Score=65.68  Aligned_cols=78  Identities=15%  Similarity=0.007  Sum_probs=49.9

Q ss_pred             CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC
Q psy17342        291 DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG  370 (401)
Q Consensus       291 d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  370 (401)
                      +|.|..||+.+++.+.+... ..+...-.....+. +++.++.|+.|+.||.++++.+..++.  +......-+.+..+|
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg-~vf~gt~dg~l~A~D~~tG~~lW~~~l--~~g~~~~P~~y~~~G  527 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGD-LVFYGTLDGYLKARDSDTGDLLWKFKI--PSGAIGYPMTYTHKG  527 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEEC--SSCCCSCCEEEEETT
T ss_pred             cCeEEEEECCCCCEEeEecC-CCCccCcceEecCC-EEEEECCCCeEEEEECCCCCEEEEeeC--CCCcEeccEEEEeCC
Confidence            57899999999998877754 22222111122343 566688999999999999997766653  222222225556788


Q ss_pred             cE
Q psy17342        371 TQ  372 (401)
Q Consensus       371 ~~  372 (401)
                      +.
T Consensus       528 ~q  529 (599)
T 1w6s_A          528 TQ  529 (599)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.34  E-value=0.00088  Score=56.94  Aligned_cols=210  Identities=7%  Similarity=-0.008  Sum_probs=129.6

Q ss_pred             ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEE
Q psy17342         67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLW  146 (401)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw  146 (401)
                      .+..++|++.+..|..+..         ..+.|..+++.............-.....+++.+.+.++.++-...+.|.++
T Consensus        36 ~~~~ld~d~~~~~lyw~D~---------~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~  106 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDV---------SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVS  106 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEET---------TTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccEEEEEEeCCCEEEEEEC---------CCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEE
Confidence            4778999997777777763         6789999998865332333333335677899987665677776677899999


Q ss_pred             ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEe--CCCcEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342        147 DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS--NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS  224 (401)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (401)
                      +++.......      ..........+++  .|.+..|+.+.  ..+.|...++..  .....+ ..     ..-.....
T Consensus       107 ~~dG~~~~~l------~~~~~~~P~giav--dp~~g~ly~td~~~~~~I~r~~~dG--~~~~~~-~~-----~~l~~Png  170 (318)
T 3sov_A          107 NLDGSLRKVL------FWQELDQPRAIAL--DPSSGFMYWTDWGEVPKIERAGMDG--SSRFII-IN-----SEIYWPNG  170 (318)
T ss_dssp             ETTSCSCEEE------ECSSCSSEEEEEE--EGGGTEEEEEECSSSCEEEEEETTS--CSCEEE-EC-----SSCSCEEE
T ss_pred             ECCCCcEEEE------EeCCCCCccEEEE--eCCCCEEEEEecCCCCEEEEEEcCC--CCeEEE-EE-----CCCCCccE
Confidence            9876543211      1123345678888  66555555444  256777777653  111111 00     12234678


Q ss_pred             EEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc
Q psy17342        225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP  304 (401)
Q Consensus       225 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  304 (401)
                      ++++|.++.++++-+..+.|+.+++.+.....  ...+.......+++..       +.++.+-...+.|..++..+++.
T Consensus       171 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~--~~~~~~~~P~glav~~-------~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          171 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA--VVKGSLPHPFALTLFE-------DILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEE--EECSCCSCEEEEEEET-------TEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEEeccCCEEEEEECCCCEEEEEcCCCCceEE--EecCCCCCceEEEEeC-------CEEEEEecCCCeEEEEECCCCCc
Confidence            99994345555555678889999987543221  1222333445666642       46666666678898888877777


Q ss_pred             eEEEee
Q psy17342        305 VHSFNE  310 (401)
Q Consensus       305 ~~~~~~  310 (401)
                      ...+..
T Consensus       242 ~~~i~~  247 (318)
T 3sov_A          242 LREIHS  247 (318)
T ss_dssp             CEEEEC
T ss_pred             eEEEeC
Confidence            666654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.34  E-value=2.4e-05  Score=63.37  Aligned_cols=159  Identities=13%  Similarity=0.018  Sum_probs=105.1

Q ss_pred             eEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342        222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE  301 (401)
Q Consensus       222 v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  301 (401)
                      ...+.|+  ++.++.+.+.+|.|+.+|+.+.+  .+.........-..+++..       ..+++..-.++.+.+||..+
T Consensus        57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgk--v~~~~l~~~~FgeGit~~g-------~~Ly~ltw~~~~v~V~D~~T  125 (268)
T 3nok_A           57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQ--PVWMERLGNIFAEGLASDG-------ERLYQLTWTEGLLFTWSGMP  125 (268)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEECCSSCSS--CSEEEECTTCCEEEEEECS-------SCEEEEESSSCEEEEEETTT
T ss_pred             cceEEEE--CCEEEEEcCCCCEEEEEECCCCc--EEeEECCCCcceeEEEEeC-------CEEEEEEccCCEEEEEECCc
Confidence            4677777  36677788888999999998554  3443311111112344443       35666666789999999999


Q ss_pred             CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecC--CCCeEEEEecCCCcEEEEEecC
Q psy17342        302 NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG--APALSRVTWTPNGTQLCVGDEK  379 (401)
Q Consensus       302 ~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~d  379 (401)
                      .+.+.++.... .-..++  ++++.++++ ..++.|.++|..+.+....+......  -..++.+.|. +|+..+..-.+
T Consensus       126 l~~~~ti~~~~-eGwGLt--~Dg~~L~vS-dGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s  200 (268)
T 3nok_A          126 PQRERTTRYSG-EGWGLC--YWNGKLVRS-DGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHS  200 (268)
T ss_dssp             TEEEEEEECSS-CCCCEE--EETTEEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTC
T ss_pred             CcEEEEEeCCC-ceeEEe--cCCCEEEEE-CCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCC
Confidence            99999988633 224454  556645554 45889999999998776665543321  1245677877 77766555567


Q ss_pred             CcEEEEEeccCccceeeee
Q psy17342        380 GAITMFDVGEVGIACLKFI  398 (401)
Q Consensus       380 g~v~iw~~~~~~~~~l~~~  398 (401)
                      ..|.+.|.++++  .+..+
T Consensus       201 ~~I~vIDp~TG~--V~~~I  217 (268)
T 3nok_A          201 SDVLEIDPATGT--VVGVI  217 (268)
T ss_dssp             SEEEEECTTTCB--EEEEE
T ss_pred             CeEEEEeCCCCc--EEEEE
Confidence            789999999984  44443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.33  E-value=0.00016  Score=58.09  Aligned_cols=189  Identities=7%  Similarity=-0.067  Sum_probs=110.5

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      .-...+.|++ +..+.+.+.        ...+.|+.+|+++++...+..+....--..+++.  +..+....-.++.+.+
T Consensus        21 ~ftqGL~~~~-~~LyestG~--------~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v   89 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGE--------TGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFV   89 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECC--------TTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred             cccccEEEEC-CEEEEECCC--------CCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEE
Confidence            4567889987 434444441        0235999999999988776655422222334443  5456666667899999


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEE
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL  225 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (401)
                      ||..+.+......    ...   .-+.+++    ++..|+.+..++.|.++|..+.. ....+.+..  ....-..++.+
T Consensus        90 ~D~~tl~~~~ti~----~~~---~Gwglt~----dg~~L~vSdgs~~l~~iDp~t~~-~~~~I~V~~--~g~~~~~lNeL  155 (243)
T 3mbr_X           90 YDLATLTPRARFR----YPG---EGWALTS----DDSHLYMSDGTAVIRKLDPDTLQ-QVGSIKVTA--GGRPLDNLNEL  155 (243)
T ss_dssp             EETTTTEEEEEEE----CSS---CCCEEEE----CSSCEEEECSSSEEEEECTTTCC-EEEEEECEE--TTEECCCEEEE
T ss_pred             EECCcCcEEEEEe----CCC---CceEEee----CCCEEEEECCCCeEEEEeCCCCe-EEEEEEEcc--CCcccccceee
Confidence            9998877543322    122   2245554    56667776778899999987633 222222221  00011234455


Q ss_pred             EeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec-------------CCCCceeeeecCccCCCCCCCcEEEEE
Q psy17342        226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE-------------GHEGPVVGLSSHRAQGHIDFSHLYLTS  288 (401)
Q Consensus       226 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~-------------~~~~~v~~i~~~~~~~~~~~~~~l~s~  288 (401)
                      .+.  ++..++..-.+..|.+.|..+.+  .+..+.             ....-.+.|+++|..     ..+++||
T Consensus       156 e~~--~G~lyanvw~s~~I~vIDp~tG~--V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~-----~~lfVTG  222 (243)
T 3mbr_X          156 EWV--NGELLANVWLTSRIARIDPASGK--VVAWIDLQALVPDADALTDSTNDVLNGIAFDAEH-----DRLFVTG  222 (243)
T ss_dssp             EEE--TTEEEEEETTTTEEEEECTTTCB--EEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTT-----TEEEEEE
T ss_pred             EEe--CCEEEEEECCCCeEEEEECCCCC--EEEEEECCcCccccccccCCcCCceEEEEEcCCC-----CEEEEEC
Confidence            654  55555555567788888887443  333322             112356889999974     4556655

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.27  E-value=0.00079  Score=59.94  Aligned_cols=241  Identities=8%  Similarity=-0.027  Sum_probs=134.0

Q ss_pred             CeeEEEEeC-CCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-CC----cE
Q psy17342        120 PVLSCCFAK-FNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-DG----RL  193 (401)
Q Consensus       120 ~v~~~~~~~-~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg----~i  193 (401)
                      ....|+++| ++.. |+.....+.|+.+|+........       .........+++  +++++.|+.+.. ++    .+
T Consensus       138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~-------~~~~~~P~~ia~--d~~G~~lyvad~~~~~~~~~v  207 (430)
T 3tc9_A          138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTV-------YSGLSKVRTICW--THEADSMIITNDQNNNDRPNN  207 (430)
T ss_dssp             CCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTEEEEE-------ECCCSCEEEEEE--CTTSSEEEEEECCSCTTSEEE
T ss_pred             CCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCEEEEE-------ecCCCCcceEEE--eCCCCEEEEEeCCCCcccceE
Confidence            457889997 3434 44444447888899876543211       123456788999  889885555544 22    23


Q ss_pred             EEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecC
Q psy17342        194 CSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSH  273 (401)
Q Consensus       194 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  273 (401)
                      ...+...  .......+.      .......++++|.++.++++-..++.|+.++........+.... .......++++
T Consensus       208 ~~~~~~g--~~~~~~~l~------~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~-~~~~P~gia~~  278 (430)
T 3tc9_A          208 YILTRES--GFKVITELT------KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ-DSGWEFHIQFH  278 (430)
T ss_dssp             EEEEGGG--TSCSEEEEE------ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS-SSSCCEEEEEC
T ss_pred             EEEeCCC--ceeeeeeec------cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC-CCCcceeEEEc
Confidence            3333321  111111111      12245677888336777777777889999998743211111111 12345789999


Q ss_pred             ccCCCCCCCc-EEEEEeCCCeEEEEEeeCC--Cc--eEEEeec---------------CCceE-EEEEC--------CCC
Q psy17342        274 RAQGHIDFSH-LYLTSSYDWSVKLWNIKEN--KP--VHSFNEF---------------RDYVM-DVQWS--------PIN  324 (401)
Q Consensus       274 ~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~--~~--~~~~~~~---------------~~~v~-~v~~~--------~~~  324 (401)
                      |+      ++ ++++-...+.|..++....  +.  +..+.+.               -.... .++..        +++
T Consensus       279 pd------G~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g  352 (430)
T 3tc9_A          279 PS------GNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY  352 (430)
T ss_dssp             TT------SSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE
T ss_pred             CC------CCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC
Confidence            98      66 5555566789999887642  11  2223221               01123 45553        345


Q ss_pred             CcEEEEEecCCEEEEEeCCCCCCCcceEEe-----ec---C-------CCCeEEEEecCC-CcEEEEEecCCcEEEEEec
Q psy17342        325 PALFATVEVAGRVDLWNLNLDTEVPATSAI-----VE---G-------APALSRVTWTPN-GTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       325 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~---~-------~~~v~~~~~s~~-g~~l~~~~~dg~v~iw~~~  388 (401)
                      . ++++-...+.|+.++. .+. +..+...     .+   +       -.....++++|+ |.++++-.....|+.++++
T Consensus       353 ~-lyvaD~~n~~I~~i~~-~G~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          353 D-FYFCDRENHCIRILTP-QGR-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             E-EEEEEGGGTEEEEECT-TSE-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             e-EEEEECCCcEEEEECC-CCc-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            3 6666666788888883 332 1121110     00   0       124678999995 6655555566778887764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.26  E-value=0.00035  Score=62.25  Aligned_cols=246  Identities=9%  Similarity=0.100  Sum_probs=132.3

Q ss_pred             ceEEEEecC-CCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC----
Q psy17342         67 NVTYMDWST-QHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG----  141 (401)
Q Consensus        67 ~v~~~~~~~-~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg----  141 (401)
                      ....++++| ++..|.++.          ..+.|+.+|++++...  ...........++|++++..++++...++    
T Consensus       138 ~P~~lavdp~~~g~Lyv~d----------~~~~I~~id~~~~~v~--~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~  205 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVG----------EQHPTRLIDFEKEYVS--TVYSGLSKVRTICWTHEADSMIITNDQNNNDRP  205 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEE----------BTEEEEEEETTTTEEE--EEECCCSCEEEEEECTTSSEEEEEECCSCTTSE
T ss_pred             CCCEEEECCCCCCeEEEEe----------CCCcEEEEECCCCEEE--EEecCCCCcceEEEeCCCCEEEEEeCCCCcccc
Confidence            467889998 455677776          2388999998854322  22334566889999998843555543222    


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      .+...+. .+.......  +  . .......+++  .+ ++.++++-..++.|..++...... ......      +...
T Consensus       206 ~v~~~~~-~g~~~~~~~--l--~-~~~~p~giav--dp~~g~lyv~d~~~~~V~~~~~~~~~~-~~~~~~------~~~~  270 (430)
T 3tc9_A          206 NNYILTR-ESGFKVITE--L--T-KGQNCNGAET--HPINGELYFNSWNAGQVFRYDFTTQET-TPLFTI------QDSG  270 (430)
T ss_dssp             EEEEEEG-GGTSCSEEE--E--E-ECSSCCCEEE--CTTTCCEEEEETTTTEEEEEETTTTEE-EEEEEC------SSSS
T ss_pred             eEEEEeC-CCceeeeee--e--c-cCCCceEEEE--eCCCCEEEEEECCCCEEEEEECCCCcE-EEEEEc------CCCC
Confidence            2333443 222211100  1  1 1123456677  77 666666666778899998763111 011111      1123


Q ss_pred             ceEEEEeccCCCC-eEEEEcCCceEEEEeCCCCCCCc--eeeecCC---CC------------cee-eeecCcc---CCC
Q psy17342        221 AVLSLAFPQNDVN-NFVVGCEDGNVYSACRHGNKAGN--VECYEGH---EG------------PVV-GLSSHRA---QGH  278 (401)
Q Consensus       221 ~v~~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~--~~~~~~~---~~------------~v~-~i~~~~~---~~~  278 (401)
                      ....++++ ++++ ++++-...+.|+.++........  ...+.+.   .+            ... .+...+.   ...
T Consensus       271 ~P~gia~~-pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D  349 (430)
T 3tc9_A          271 WEFHIQFH-PSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSS  349 (430)
T ss_dssp             CCEEEEEC-TTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSS
T ss_pred             cceeEEEc-CCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccC
Confidence            46789999 7888 45555677889998776422111  1122111   00            011 2222110   000


Q ss_pred             CCCCcEEEEEeCCCeEEEEEeeCCCceEEEeec---------C---------CceEEEEECCCCCcEEEEEecCCEEEEE
Q psy17342        279 IDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEF---------R---------DYVMDVQWSPINPALFATVEVAGRVDLW  340 (401)
Q Consensus       279 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------~---------~~v~~v~~~~~~~~~l~~~~~d~~i~iw  340 (401)
                      .+ +.++++-...+.|+.++. .++ +.++.+.         .         .....++++|++..++++-.....|+.+
T Consensus       350 ~~-g~lyvaD~~n~~I~~i~~-~G~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i  426 (430)
T 3tc9_A          350 DE-YDFYFCDRENHCIRILTP-QGR-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI  426 (430)
T ss_dssp             CC-EEEEEEEGGGTEEEEECT-TSE-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred             CC-CeEEEEECCCcEEEEECC-CCc-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence            00 345555455677888773 343 3333221         1         1467899999533477776677788887


Q ss_pred             eCC
Q psy17342        341 NLN  343 (401)
Q Consensus       341 d~~  343 (401)
                      +++
T Consensus       427 ~~e  429 (430)
T 3tc9_A          427 GYE  429 (430)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            754

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.26  E-value=0.0017  Score=62.28  Aligned_cols=227  Identities=11%  Similarity=-0.004  Sum_probs=129.8

Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeeccCCCCC-ccccccccccccC
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLEMLSSP-QETRDLQYNNKQT  217 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~  217 (401)
                      ...|+..++.......+       ......+..|+|  .+ ++.++++-...+.|+.+++...... .....+.     .
T Consensus       403 ~~~Ir~i~l~~~~~~~l-------~~~~~~~~gl~~--d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~-----~  468 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSL-------IPNLRNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-----R  468 (791)
T ss_dssp             BSSEEEECTTSCCCEEE-------ECSCSSEEEEEE--ETTTTEEEEEETTTTEEEEEEC--------CEEEEC-----S
T ss_pred             ccceeEeeccCCcceee-------ecCCCceEEEee--cccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe-----c
Confidence            45688878776543211       223456778888  55 4555556666778888887642110 1111111     1


Q ss_pred             CccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC-CeEEE
Q psy17342        218 KNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD-WSVKL  296 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d-~~i~i  296 (401)
                      .......|++.+..++++++-...+.|.+.++.+...  ...+.........|++.|..     +.++++-... +.|..
T Consensus       469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~--~~l~~~~l~~P~gIaVDp~~-----g~LYwtD~g~~~~I~~  541 (791)
T 3m0c_C          469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KTLFRENGSKPRAIVVDPVH-----GFMYWTDWGTPAKIKK  541 (791)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE--EEEEECTTCCEEEEEEETTT-----TEEEEEECSSSCEEEE
T ss_pred             CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE--EEEEeCCCCCcceEEEecCC-----CCEEEecCCCCCeEEE
Confidence            2234567888844456666677788999999875432  12222333457899999874     4555554333 67888


Q ss_pred             EEeeCCCceEEEe-ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEE
Q psy17342        297 WNIKENKPVHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCV  375 (401)
Q Consensus       297 wd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  375 (401)
                      .++. +.....+. ..-.....|++++.+..++++-...+.|...++..... ..+......-.....|++.. +.++++
T Consensus       542 ~~~d-G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~~-~~lYwt  618 (791)
T 3m0c_C          542 GGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE-DKVFWT  618 (791)
T ss_dssp             EETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEET-TEEEEE
T ss_pred             EecC-CCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEeC-CEEEEE
Confidence            8875 44444333 23356889999987766666666678999999875432 22221101122344666632 344444


Q ss_pred             EecCCcEEEEEeccC
Q psy17342        376 GDEKGAITMFDVGEV  390 (401)
Q Consensus       376 ~~~dg~v~iw~~~~~  390 (401)
                      -...+.|...+..++
T Consensus       619 D~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          619 DIINEAIFSANRLTG  633 (791)
T ss_dssp             ETTTTEEEEEETTTC
T ss_pred             ECCCCEEEEEeCCCC
Confidence            445677877776665

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.25  E-value=0.0017  Score=55.54  Aligned_cols=277  Identities=8%  Similarity=-0.033  Sum_probs=139.0

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe---cCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF---CQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      ..+.+|.|.+.+..++ ++          ..+.| +...+.++.-......   ....+.++.|.+ + ..++.| ..+.
T Consensus        36 ~~~~~v~~~~~~~~~~-~G----------~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g-~~g~  100 (327)
T 2xbg_A           36 ATILDMSFIDRHHGWL-VG----------VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVG-EPPI  100 (327)
T ss_dssp             SCEEEEEESSSSCEEE-EE----------TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEE-ETTE
T ss_pred             CcEEEEEECCCCcEEE-Ec----------CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEE-CCCe
Confidence            5699999987776566 55          36665 3333333322222111   134688999986 3 455554 5664


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      |.. ..+.++. -...  .....+.+.+..+.+  .+++..++.+ .+|.|.  .....+..-....      .+....+
T Consensus       101 i~~-S~DgG~t-W~~~--~~~~~~~~~~~~i~~--~~~~~~~~~~-~~g~v~--~S~DgG~tW~~~~------~~~~~~~  165 (327)
T 2xbg_A          101 MLH-TTDGGQS-WSQI--PLDPKLPGSPRLIKA--LGNGSAEMIT-NVGAIY--RTKDSGKNWQALV------QEAIGVM  165 (327)
T ss_dssp             EEE-ESSTTSS-CEEC--CCCTTCSSCEEEEEE--EETTEEEEEE-TTCCEE--EESSTTSSEEEEE------CSCCCCE
T ss_pred             EEE-ECCCCCC-ceEC--ccccCCCCCeEEEEE--ECCCCEEEEe-CCccEE--EEcCCCCCCEEee------cCCCcce
Confidence            433 3332322 1100  000123345677776  4556655554 455442  2222111111111      1133467


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN  302 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  302 (401)
                      ..+++. +++.+++++...+..+-.|-....-..+  -......+..+.+.|+      +.++ ..+.+|.+++.+...+
T Consensus       166 ~~~~~~-~~~~~~~~g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~------g~~~-~~~~~G~~~~s~~D~G  235 (327)
T 2xbg_A          166 RNLNRS-PSGEYVAVSSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPD------GRLW-MIVNGGKIAFSDPDNS  235 (327)
T ss_dssp             EEEEEC-TTSCEEEEETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTT------SCEE-EEETTTEEEEEETTEE
T ss_pred             EEEEEc-CCCcEEEEECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCC------CCEE-EEeCCceEEEecCCCC
Confidence            889998 5666666665443333344312222122  1234566788888876      4555 4455788777632212


Q ss_pred             CceEEEee----cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEec
Q psy17342        303 KPVHSFNE----FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDE  378 (401)
Q Consensus       303 ~~~~~~~~----~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  378 (401)
                      +.-..+..    +...+.++.+.+++. +++++. ++.| .+....++.-..+.........+..+.|.+++. +++++.
T Consensus       236 ~tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~  311 (327)
T 2xbg_A          236 ENWGELLSPLRRNSVGFLDLAYRTPNE-VWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQ  311 (327)
T ss_dssp             EEECCCBCTTSSCCSCEEEEEESSSSC-EEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECS
T ss_pred             CeeEeccCCcccCCcceEEEEecCCCE-EEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcC
Confidence            21111111    123588999998775 566554 6766 344443432111110001234578888876655 556667


Q ss_pred             CCcEEEEE
Q psy17342        379 KGAITMFD  386 (401)
Q Consensus       379 dg~v~iw~  386 (401)
                      +|.|.-++
T Consensus       312 ~G~i~~~~  319 (327)
T 2xbg_A          312 KGILLRYV  319 (327)
T ss_dssp             TTEEEEEC
T ss_pred             CceEEEEc
Confidence            88766554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.23  E-value=0.0019  Score=61.89  Aligned_cols=233  Identities=7%  Similarity=-0.098  Sum_probs=134.1

Q ss_pred             CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEE
Q psy17342         96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV  175 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  175 (401)
                      ...|+..++.....  .........+..|+|.+....++++-...+.|+.+++...........  .+.........|++
T Consensus       403 ~~~Ir~i~l~~~~~--~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~--vi~~~l~~P~GLAv  478 (791)
T 3m0c_C          403 RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDIQAPDGLAV  478 (791)
T ss_dssp             BSSEEEECTTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE--EECSSCSCCCEEEE
T ss_pred             ccceeEeeccCCcc--eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeE--EEecCCCCcceeee
Confidence            46677777774432  223344567889999986656666766678899998875321000000  01222334556777


Q ss_pred             eecCCc-eEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC-ceEEEEeCCCCC
Q psy17342        176 IGTQNA-HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED-GNVYSACRHGNK  253 (401)
Q Consensus       176 ~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~~~~~~~~~  253 (401)
                        ...+ .++++-...+.|.+.++..  .....+ +.     ........|++.|..+.++++-... +.|...++.+..
T Consensus       479 --D~~~~~LY~tD~~~~~I~v~~ldG--~~~~~l-~~-----~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~  548 (791)
T 3m0c_C          479 --DWIHSNIYWTDSVLGTVSVADTKG--VKRKTL-FR-----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  548 (791)
T ss_dssp             --ETTTTEEEEEETTTTEEEEEETTS--SSEEEE-EE-----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred             --eecCCcEEEEecCCCeEEEEeCCC--CeEEEE-Ee-----CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc
Confidence              5444 5566666778899988863  221111 11     1223578999994344444444333 788888887543


Q ss_pred             CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee--cCCceEEEEECCCCCcEEEEE
Q psy17342        254 AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE--FRDYVMDVQWSPINPALFATV  331 (401)
Q Consensus       254 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~l~~~  331 (401)
                      .  .......-.....|++.+..     +.++++-.....|...++........+..  .-....+|++..+  .++++-
T Consensus       549 ~--~~lv~~~l~~P~GLavD~~~-----~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~--~lYwtD  619 (791)
T 3m0c_C          549 I--YSLVTENIQWPNGITLDLLS-----GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTD  619 (791)
T ss_dssp             E--EEEECSSCSCEEEEEEETTT-----TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT--EEEEEE
T ss_pred             e--EEEEeCCCCCceEEEEecCC-----CeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC--EEEEEE
Confidence            2  22222233467889998774     45555555567899999864433333332  1223457776443  477777


Q ss_pred             ecCCEEEEEeCCCCCCCcce
Q psy17342        332 EVAGRVDLWNLNLDTEVPAT  351 (401)
Q Consensus       332 ~~d~~i~iwd~~~~~~~~~~  351 (401)
                      ...+.|...|..+++.+..+
T Consensus       620 ~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          620 IINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             TTTTEEEEEETTTCCCCEEE
T ss_pred             CCCCEEEEEeCCCCcceEEe
Confidence            77788988887776554443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.20  E-value=0.0041  Score=58.13  Aligned_cols=226  Identities=9%  Similarity=-0.075  Sum_probs=139.4

Q ss_pred             CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEE
Q psy17342         96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV  175 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  175 (401)
                      ...|+..++++...........-..+..++|.+.+..+.++-..++.|..++++........      .........+++
T Consensus        14 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~------~~g~~~P~GlAv   87 (628)
T 4a0p_A           14 RADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV------EFGLDYPEGMAV   87 (628)
T ss_dssp             TTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE------CSSCSCCCEEEE
T ss_pred             CCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE------eCCCCCcceEEE
Confidence            68899999985433221222233578899999977667777667889999998765432221      111134456776


Q ss_pred             eecCC-ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEE-cCCceEEEEeCCCCC
Q psy17342        176 IGTQN-AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVG-CEDGNVYSACRHGNK  253 (401)
Q Consensus       176 ~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~  253 (401)
                        ... ++++++-...+.|.+.++...  ..... ..     ..-.....+++.|..+.++++- +..+.|...++.+..
T Consensus        88 --D~~~~~LY~tD~~~~~I~v~~~dG~--~~~~l-~~-----~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~  157 (628)
T 4a0p_A           88 --DWLGKNLYWADTGTNRIEVSKLDGQ--HRQVL-VW-----KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE  157 (628)
T ss_dssp             --ETTTTEEEEEETTTTEEEEEETTST--TCEEE-EC-----SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred             --EeCCCEEEEEECCCCEEEEEecCCC--cEEEE-Ee-----CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc
Confidence              444 455566666778888888632  11111 10     1234578999994455444443 235788888887554


Q ss_pred             CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEec
Q psy17342        254 AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEV  333 (401)
Q Consensus       254 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~  333 (401)
                      ..   .+...-.....|++.+..     +.++++-...+.|...|+..... ..+........++++.. + .++++-..
T Consensus       158 ~~---~l~~~~~~P~GlalD~~~-----~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~-~ly~tD~~  226 (628)
T 4a0p_A          158 RT---TLVPNVGRANGLTIDYAK-----RRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-D-YIYWTDWS  226 (628)
T ss_dssp             CE---EEECSCSSEEEEEEETTT-----TEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-T-EEEEEETT
T ss_pred             eE---EEECCCCCcceEEEcccc-----CEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-C-EEEEecCC
Confidence            22   222234456789999864     45556656678899999865433 34444344566888865 3 47777767


Q ss_pred             CCEEEEEeCCCCCCC
Q psy17342        334 AGRVDLWNLNLDTEV  348 (401)
Q Consensus       334 d~~i~iwd~~~~~~~  348 (401)
                      .+.|...|..+++..
T Consensus       227 ~~~I~~~dk~tg~~~  241 (628)
T 4a0p_A          227 RRSIERANKTSGQNR  241 (628)
T ss_dssp             TTEEEEEETTTCCSC
T ss_pred             CCEEEEEECCCCCce
Confidence            889999987766543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.18  E-value=0.0031  Score=56.13  Aligned_cols=240  Identities=7%  Similarity=-0.082  Sum_probs=132.8

Q ss_pred             CeeEEEEeCC--CCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC---Cc-E
Q psy17342        120 PVLSCCFAKF--NPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND---GR-L  193 (401)
Q Consensus       120 ~v~~~~~~~~--~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~-i  193 (401)
                      ....++|.|+  +.. |+.+...+.|+.++..++.....       .........+++  .+++.++++....   .. +
T Consensus       140 ~P~gvavd~~s~~g~-Lyv~D~~~~I~~id~~~g~v~~~-------~~~~~~P~giav--d~dG~lyVad~~~~~~~~gv  209 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDD-LYWVGQRDAFRHVDFVNQYVDIK-------TTNIGQCADVNF--TLNGDMVVVDDQSSDTNTGI  209 (433)
T ss_dssp             CCCEEEECTTTTTCE-EEEECBTSCEEEEETTTTEEEEE-------CCCCSCEEEEEE--CTTCCEEEEECCSCTTSEEE
T ss_pred             CCceEEEccccCCCE-EEEEeCCCCEEEEECCCCEEEEe-------ecCCCCccEEEE--CCCCCEEEEcCCCCcccceE
Confidence            4568999984  334 44444448899999876553211       223445789999  8898844444321   11 2


Q ss_pred             EEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeee-c-CCCCceeeee
Q psy17342        194 CSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY-E-GHEGPVVGLS  271 (401)
Q Consensus       194 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-~-~~~~~v~~i~  271 (401)
                      ...+...  .......+      ........++++|.++.++++-..++.|+.++.....  ....+ . +....-..++
T Consensus       210 ~~~~~~~--~~~~~~~~------~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~--~~~~~~~~~~~~~~~~ia  279 (433)
T 4hw6_A          210 YLFTRAS--GFTERLSL------CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT--LTEEEVMMDTKGSNFHIV  279 (433)
T ss_dssp             EEECGGG--TTCCEEEE------EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC--EEEEEEECSCCSSCEEEE
T ss_pred             EEEECCC--Ceeccccc------cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe--EEEEEeccCCCCCcccEE
Confidence            2232221  11100000      0122345678883366666666677889999886332  21111 1 1112234699


Q ss_pred             cCccCCCCCCCc-EEEEEeCCCeEEEEEeeC--CCc--eEEEeec---------------CCceEEEEE---------CC
Q psy17342        272 SHRAQGHIDFSH-LYLTSSYDWSVKLWNIKE--NKP--VHSFNEF---------------RDYVMDVQW---------SP  322 (401)
Q Consensus       272 ~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~--~~~--~~~~~~~---------------~~~v~~v~~---------~~  322 (401)
                      ++|+      ++ ++++-...+.|+.+++..  ++.  ...+.+.               -.....+++         .+
T Consensus       280 ~dpd------G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~  353 (433)
T 4hw6_A          280 WHPT------GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED  353 (433)
T ss_dssp             ECTT------SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC
T ss_pred             EeCC------CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC
Confidence            9998      56 555555678999988752  221  1223221               123567999         67


Q ss_pred             CCCcEEEEEecCCEEEEEeCCCCCCCcceEEee--------c-------CCCCeEEEEec-CCCcEEEEEecCCcEEEEE
Q psy17342        323 INPALFATVEVAGRVDLWNLNLDTEVPATSAIV--------E-------GAPALSRVTWT-PNGTQLCVGDEKGAITMFD  386 (401)
Q Consensus       323 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------~-------~~~~v~~~~~s-~~g~~l~~~~~dg~v~iw~  386 (401)
                      ++. ++++-...+.|+.++.. +. +..+....        .       .-.....++++ ++|.++++=...+.|+.++
T Consensus       354 ~g~-lyvaD~~n~~I~~~~~~-G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~  430 (433)
T 4hw6_A          354 EYD-FYFCDRDSHTVRVLTPE-GR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA  430 (433)
T ss_dssp             CEE-EEEEETTTTEEEEECTT-SE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred             CCc-EEEEECCCCEEEEECCC-CC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence            775 67776677899998852 32 11111000        0       01236788998 5666666656677788877


Q ss_pred             ec
Q psy17342        387 VG  388 (401)
Q Consensus       387 ~~  388 (401)
                      ++
T Consensus       431 ~e  432 (433)
T 4hw6_A          431 PE  432 (433)
T ss_dssp             EC
T ss_pred             cC
Confidence            64

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.17  E-value=3e-05  Score=73.54  Aligned_cols=227  Identities=11%  Similarity=0.006  Sum_probs=124.6

Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEE-EEeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLI-SISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      .+.|+..++........       ......+..++|  .+.+..|+ +-...+.|..+++...........+.    ...
T Consensus       385 ~~~I~~id~~~~~~~~~-------~~~~~~p~gla~--d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i----~~~  451 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSL-------IPNLRNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI----SRD  451 (699)
T ss_dssp             TTC-CEECTTSCCEECC-------SCCCTTCCCCEE--ETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC----CSC
T ss_pred             ccceEEEeCCCCcceee-------eccCcceEEEcc--ccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE----eCC
Confidence            45677777766543211       112234567888  66554444 44456789888876411000111110    001


Q ss_pred             ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeee-cCCCCceeeeecCccCCCCCCCcEEEEEeCC-CeEEE
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY-EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD-WSVKL  296 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d-~~i~i  296 (401)
                      ......|++.+..++++++-...+.|.++++.+..   ...+ .........|++.|..     +.++++-... +.|..
T Consensus       452 ~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~---~~~l~~~~~~~P~giavDp~~-----g~ly~td~~~~~~I~~  523 (699)
T 1n7d_A          452 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFREQGSKPRAIVVDPVH-----GFMYWTDWGTPAKIKK  523 (699)
T ss_dssp             C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC---EEEECCCSSCCCCCEECCSSS-----SCCEECCCSSSCCEEB
T ss_pred             CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc---eEEEEeCCCCCcceEEEccCC-----CcEEEcccCCCCeEEE
Confidence            12345678774455566665677889999887542   2222 2223445788898874     4555544333 67888


Q ss_pred             EEeeCCCceEEEe-ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEE
Q psy17342        297 WNIKENKPVHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCV  375 (401)
Q Consensus       297 wd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  375 (401)
                      +++.. .....+. ..-...+.|+|+|++..++++-+..+.|..+++..... ..+............+++..+ .++++
T Consensus       524 ~~~dG-~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywt  600 (699)
T 1n7d_A          524 GGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWT  600 (699)
T ss_dssp             CCSSS-CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEE
T ss_pred             EeCCC-CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC-EEEEE
Confidence            77753 3223332 22334678999998766777777788999999875322 221110011122334555443 45555


Q ss_pred             EecCCcEEEEEeccC
Q psy17342        376 GDEKGAITMFDVGEV  390 (401)
Q Consensus       376 ~~~dg~v~iw~~~~~  390 (401)
                      ....+.|..++..++
T Consensus       601 d~~~~~V~~~d~~~G  615 (699)
T 1n7d_A          601 DIINEAIFSANRLTG  615 (699)
T ss_dssp             CSTTTCEEEEETTTE
T ss_pred             eCCCCeEEEEEccCC
Confidence            566788999987665

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.16  E-value=0.0049  Score=57.57  Aligned_cols=290  Identities=9%  Similarity=-0.005  Sum_probs=156.4

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      ..+..++|++.+..|..+..         ..+.|..++++..................+++.+.+.++.++-...+.|.+
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~---------~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v  110 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDV---------SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEV  110 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEET---------TTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CceEEEEEEeCCCEEEEEEC---------CCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEE
Confidence            45789999998888887773         578899999874422222222223578899999877677777777889999


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC--CCcEEEeeccCCCCCccccccccccccCCccceE
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN--DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVL  223 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (401)
                      .+++........      ...-.....|++  .|.+..|+.+..  .+.|...++..  ....... .     ..-....
T Consensus       111 ~~~dG~~~~~l~------~~~l~~P~~Iav--dp~~g~ly~tD~g~~~~I~r~~~dG--~~~~~l~-~-----~~~~~P~  174 (619)
T 3s94_A          111 SNLDGSLRKVLF------WQELDQPRAIAL--DPSSGFMYWTDWGEVPKIERAGMDG--SSRFIII-N-----SEIYWPN  174 (619)
T ss_dssp             EETTSCSCEEEE------CSSCSCCCCEEE--ETTTTEEEEEECSSSCEEEEEETTS--CSCEEEE-C-----SSCSSEE
T ss_pred             EECCCCCEEEEE------eCCCCCCceEEE--ecCCCeEEEeccCCCCEEEEEECCC--CceEEEE-e-----CCCCCCc
Confidence            999865432221      122234557877  665444444332  34565555542  2211111 0     1223578


Q ss_pred             EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC
Q psy17342        224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK  303 (401)
Q Consensus       224 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  303 (401)
                      .|++++.++.++++-...+.|..+++.+.....+.  .+......+|++..       ..++++-...+.|...|..+++
T Consensus       175 Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~--~~~~~~P~gi~~~~-------~~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          175 GLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV--KGSLPHPFALTLFE-------DILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESS-------SEEEEECTTTCSEEEEESSSCC
T ss_pred             EEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEE--eCCCCCceEEEEeC-------CEEEEecCCCCEEEEEECCCCc
Confidence            89999444555555567788999998764322221  11112224556543       3455555556778888876654


Q ss_pred             ceEEEee-----------cC--------------CceEEEE-----------ECCCC--------------CcEEEEEec
Q psy17342        304 PVHSFNE-----------FR--------------DYVMDVQ-----------WSPIN--------------PALFATVEV  333 (401)
Q Consensus       304 ~~~~~~~-----------~~--------------~~v~~v~-----------~~~~~--------------~~~l~~~~~  333 (401)
                      ....+..           |.              +....++           ..|.|              ..+|+.+ .
T Consensus       246 ~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~  324 (619)
T 3s94_A          246 GLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-R  324 (619)
T ss_dssp             CCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-E
T ss_pred             ccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-c
Confidence            3322211           10              0000011           11211              1122222 3


Q ss_pred             CCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEE-ecCCcEEEEEeccCc
Q psy17342        334 AGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVG-DEKGAITMFDVGEVG  391 (401)
Q Consensus       334 d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~dg~v~iw~~~~~~  391 (401)
                      .+.|+..++...... ........-..+..++|++.+..|+.+ ...+.|+.+++....
T Consensus       325 ~~~i~~i~l~~~~~~-~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~  382 (619)
T 3s94_A          325 RTDLRRISLDTPDFT-DIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG  382 (619)
T ss_dssp             SSCEEEEESSSTTCC-CEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             ccceEEEecCCCccc-eeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc
Confidence            456777777654322 122222333457889999865555544 456788888887643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.99  E-value=0.00049  Score=57.73  Aligned_cols=160  Identities=18%  Similarity=0.161  Sum_probs=104.2

Q ss_pred             ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC----C--CCceeeeec---CccCCCCCCCcEEEEEe--
Q psy17342        221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG----H--EGPVVGLSS---HRAQGHIDFSHLYLTSS--  289 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~----~--~~~v~~i~~---~~~~~~~~~~~~l~s~~--  289 (401)
                      -..++.|++.++.++++.-..+.|..|+........+ .+.+    .  ...+..|.+   .|.      +.++++..  
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~------grL~vv~~~~   86 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNS------KRLFAVMKNA   86 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSC------CEEEEEEEET
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCC------CcEEEEEccc
Confidence            3456788833444444445799999999864322122 2222    1  113578888   576      57777543  


Q ss_pred             -----------CCCeEEEEEee---CCCceEEEee--c-----------CCceEEEEECCCCCcEEEEEecC-CEEEEEe
Q psy17342        290 -----------YDWSVKLWNIK---ENKPVHSFNE--F-----------RDYVMDVQWSPINPALFATVEVA-GRVDLWN  341 (401)
Q Consensus       290 -----------~d~~i~iwd~~---~~~~~~~~~~--~-----------~~~v~~v~~~~~~~~~l~~~~~d-~~i~iwd  341 (401)
                                 .+..|..||+.   +++.+....-  .           ......++..++|. ..++++.. +.|...+
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~  165 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVS  165 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEEC
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEe
Confidence                       26789999998   7887766542  1           12488999999997 67778777 7776666


Q ss_pred             CCCCCCCcceEEee---cCCCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        342 LNLDTEVPATSAIV---EGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       342 ~~~~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      .... ....+....   ......+.++++|+|+.|++....|.+..+|+.+
T Consensus       166 pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          166 ADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             TTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            6533 222221111   1123467899999999998887799999999874

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.96  E-value=0.0073  Score=52.13  Aligned_cols=234  Identities=14%  Similarity=0.098  Sum_probs=117.7

Q ss_pred             ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE----ecCCCeeEEEEeCC---CCceEEEEec
Q psy17342         67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF----FCQSPVLSCCFAKF---NPYLILGGTY  139 (401)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~---~~~~l~~g~~  139 (401)
                      ....++|.|+|+ |+++.          ..+.|.+++ . ++.......    ........|+|+|+   +..+.++-..
T Consensus        32 ~P~~ia~~pdG~-l~V~e----------~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~   98 (352)
T 2ism_A           32 VPWALAFLPDGG-MLIAE----------RPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTV   98 (352)
T ss_dssp             CEEEEEECTTSC-EEEEE----------TTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             CceEEEEcCCCe-EEEEe----------CCCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEec
Confidence            467899999997 55556          469999998 2 331111111    12457899999997   4344444433


Q ss_pred             C-----CeEEEEECCCCCCC---ceee-ccc-cccCCCCcEEEEEEeecCCceEEEEEeCC-------------CcEEEe
Q psy17342        140 S-----GQIVLWDTRVQKKT---PVHR-TPL-SVMAHTHPVFCMSVIGTQNAHNLISISND-------------GRLCSW  196 (401)
Q Consensus       140 d-----g~v~iw~~~~~~~~---~~~~-~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-------------g~i~~w  196 (401)
                      .     +.|..++.......   .... .+. ....|.  ...++|  .+++.+.++.+..             |.|.-+
T Consensus        99 ~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~--~~~l~~--~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri  174 (352)
T 2ism_A           99 AEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHS--GGRIAF--GPDGMLYVTTGEVYERELAQDLASLGGKILRL  174 (352)
T ss_dssp             CTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCC--CCCEEE--CTTSCEEEECCCTTCGGGGGCTTCSSSEEEEE
T ss_pred             CCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcC--CceEEE--CCCCCEEEEECCCCCCccccCCCCCceEEEEE
Confidence            2     56778877643210   0111 110 011233  357888  8899766664321             445555


Q ss_pred             eccCCCCCc-c--------ccccccccccCCccceEEEEeccCCCCeEEEEcCCce--------EEEEeCCCC-------
Q psy17342        197 SLEMLSSPQ-E--------TRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGN--------VYSACRHGN-------  252 (401)
Q Consensus       197 d~~~~~~~~-~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--------i~~~~~~~~-------  252 (401)
                      +... ..+. .        ..++.   ..++ .....++|+|.++.++++-.....        |.+...-.+       
T Consensus       175 ~~dG-~~p~~npf~~~~~~~~~i~---a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~  249 (352)
T 2ism_A          175 TPEG-EPAPGNPFLGRRGARPEVY---SLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVV  249 (352)
T ss_dssp             CTTS-SBCTTCTTTTCTTSCTTEE---EECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCC
T ss_pred             cCCC-CCCCCCcccCCCCCCccEE---EEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCccc
Confidence            5432 0000 0        00000   0011 235678888435555544332222        433322110       


Q ss_pred             -------CCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc------eEEEeecCCceEEEE
Q psy17342        253 -------KAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP------VHSFNEFRDYVMDVQ  319 (401)
Q Consensus       253 -------~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~v~~v~  319 (401)
                             ...++..+..| .....+++. .      +.++++.-..+.|...++.....      ...+-.....+..++
T Consensus       250 g~~~~~~~~~p~~~~~~~-~ap~G~~~~-~------G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~  321 (352)
T 2ism_A          250 GRGNDPRYRDPLYFWPQG-FPPGNLAFF-R------GDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQ  321 (352)
T ss_dssp             SCCCCTTSCCCSEECTTC-CCEEEEEEE-T------TEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEE
T ss_pred             CCCCCCCCcCCeEecCCC-CCCcceEEE-C------CEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEE
Confidence                   01122233222 234556662 2      56776666677888888765432      122222245788999


Q ss_pred             ECCCCCcEEEEE
Q psy17342        320 WSPINPALFATV  331 (401)
Q Consensus       320 ~~~~~~~~l~~~  331 (401)
                      +.|+|. ++++.
T Consensus       322 ~~pdG~-lyv~~  332 (352)
T 2ism_A          322 VGPDGA-LYVTT  332 (352)
T ss_dssp             ECTTSC-EEEEE
T ss_pred             ECCCCc-EEEEE
Confidence            999996 55444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.94  E-value=0.0068  Score=51.38  Aligned_cols=199  Identities=10%  Similarity=0.125  Sum_probs=115.5

Q ss_pred             CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEecc---CCCCe--EEEE-c-C--CceEEEEeCC
Q psy17342        180 NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQ---NDVNN--FVVG-C-E--DGNVYSACRH  250 (401)
Q Consensus       180 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~--l~~~-~-~--d~~i~~~~~~  250 (401)
                      ....++.....+-+.+||+.  ++....+..         ..+..+..-|   -.++.  ++.+ . .  ++.|.+|++.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~--G~~l~~~~~---------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD  107 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLD--GKMLHSYNT---------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID  107 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETT--SCEEEEECC---------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred             CccEEEEEcCCCCEEEEcCC--CcEEEEccC---------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence            44567777788899999994  232222211         2344444441   11221  3333 3 3  5789999774


Q ss_pred             CCCCCceeeecC------CC-Cceeeeec--CccCCCCCCC-cEEEEEeCCCeEEEEEee-------CCCceEEEeecCC
Q psy17342        251 GNKAGNVECYEG------HE-GPVVGLSS--HRAQGHIDFS-HLYLTSSYDWSVKLWNIK-------ENKPVHSFNEFRD  313 (401)
Q Consensus       251 ~~~~~~~~~~~~------~~-~~v~~i~~--~~~~~~~~~~-~~l~s~~~d~~i~iwd~~-------~~~~~~~~~~~~~  313 (401)
                      .... .+..+..      .. ..++.+++  +|..     + .+++....+|.+..|++.       +.+.+++|.. .+
T Consensus       108 p~~~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~~-----g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gs  180 (355)
T 3amr_A          108 GKNG-TLQSMTDPDHPIATAINEVYGFTLYHSQKT-----GKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NS  180 (355)
T ss_dssp             TTTC-CEEECSCTTSCEECCCSSCCCEEEEECTTT-----CCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SS
T ss_pred             CCCC-ceeeccccccCcCCCCCCeeEEEEEecCCC-----CcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CC
Confidence            3222 2333311      11 45667777  6643     3 367777788999999983       3456777776 45


Q ss_pred             ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC--CCcceEEeecC---CCCeEEEEe--cCCCc-EEEEEe-cCCcEEE
Q psy17342        314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDT--EVPATSAIVEG---APALSRVTW--TPNGT-QLCVGD-EKGAITM  384 (401)
Q Consensus       314 ~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~---~~~v~~~~~--s~~g~-~l~~~~-~dg~v~i  384 (401)
                      .+-.+...+... .|+.+-++.-|..++.....  ....+. ..+.   ...+..|++  .++++ +|++++ .+.+..+
T Consensus       181 q~EgcvvDd~~g-~Lyv~eEd~GIw~~da~p~~~~~~~~v~-~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~V  258 (355)
T 3amr_A          181 QTEGMAADDEYG-RLYIAEEDEAIWKFSAEPDGGSNGTVID-RADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAI  258 (355)
T ss_dssp             CEEEEEEETTTT-EEEEEETTTEEEEEECSTTSCSCCEEEE-EBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred             CcceEEEcCCCC-eEEEecccceEEEEeCCcCCCCCceEEE-EecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEE
Confidence            788899998776 57777788666666654222  111121 1222   235778888  45555 565555 6778999


Q ss_pred             EEeccCccceeeeee
Q psy17342        385 FDVGEVGIACLKFIT  399 (401)
Q Consensus       385 w~~~~~~~~~l~~~~  399 (401)
                      ||.+... +.+..|.
T Consensus       259 ydr~~~~-~~vg~f~  272 (355)
T 3amr_A          259 YDRQGKN-KYVADFR  272 (355)
T ss_dssp             EESSTTC-CEEEEEE
T ss_pred             EECCCCC-cEEEEEE
Confidence            9996321 4555543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.93  E-value=0.0074  Score=51.72  Aligned_cols=198  Identities=11%  Similarity=0.078  Sum_probs=107.5

Q ss_pred             EEEEEEeecCCceEEEEEe------------CCCcEEEeeccCCCCCccccccccccccCCccceEEEEecc-CCCC-eE
Q psy17342        170 VFCMSVIGTQNAHNLISIS------------NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQ-NDVN-NF  235 (401)
Q Consensus       170 v~~~~~~~~~~~~~l~s~~------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~-~l  235 (401)
                      ..++..  .++|..+++++            .+|.|.++|++........+.+..............+.+.+ .++. +|
T Consensus        52 ~EDi~~--~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           52 SEDLEI--LPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCEEEE--CTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             cceeEE--cCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            345555  56665555542            68999999987422222222222100111223455566542 1332 34


Q ss_pred             EEE-cC--CceEEEEeCCCCC--CCceeeecCC-CCceeeeecCccCCCCCCCcEEEEEeC---C------------CeE
Q psy17342        236 VVG-CE--DGNVYSACRHGNK--AGNVECYEGH-EGPVVGLSSHRAQGHIDFSHLYLTSSY---D------------WSV  294 (401)
Q Consensus       236 ~~~-~~--d~~i~~~~~~~~~--~~~~~~~~~~-~~~v~~i~~~~~~~~~~~~~~l~s~~~---d------------~~i  294 (401)
                      +++ ..  +..|.+|++....  ...+..+.+. -...+.+.+.++      +.++++...   |            ..-
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~------G~fyvt~~~~ftd~~~~~~e~~~~~~~g  203 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGP------EHFYATNDHYFIDPYLKSWEMHLGLAWS  203 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEET------TEEEEEESCSCSSHHHHHHHHHTTCCCE
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCC------CCEEecCCcEeCCcccccchhhccCCcc
Confidence            433 33  4567777655322  2223344332 234678888887      676666541   1            223


Q ss_pred             EEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecC-CCcEE
Q psy17342        295 KLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTP-NGTQL  373 (401)
Q Consensus       295 ~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l  373 (401)
                      ++|.+..++. ..+...-...+.++|+|+++.++++-+..+.|..|++.....+...+. .......-.+++.+ +|++.
T Consensus       204 ~vyr~d~~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~-~~~~g~PDGi~vD~e~G~lw  281 (355)
T 3sre_A          204 FVTYYSPNDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRV-LSFDTLVDNISVDPVTGDLW  281 (355)
T ss_dssp             EEEEECTTCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSEEEEEEECTTTCCEE
T ss_pred             EEEEEECCeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEE-EeCCCCCceEEEeCCCCcEE
Confidence            3444433433 333332456789999999987777777889999999974332222221 12245567889998 59877


Q ss_pred             EEEe
Q psy17342        374 CVGD  377 (401)
Q Consensus       374 ~~~~  377 (401)
                      +++.
T Consensus       282 va~~  285 (355)
T 3sre_A          282 VGCH  285 (355)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            7664

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.91  E-value=2.6e-05  Score=73.98  Aligned_cols=223  Identities=9%  Similarity=-0.044  Sum_probs=121.3

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCC---CCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFK---KTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      ..+..++|++.+..|..+..         ..+.|..+++...   ................|++.+.+.+++++-...+.
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~---------~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~  476 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDL---------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT  476 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCT---------TTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSC
T ss_pred             cceEEEccccccCeEEEEec---------CCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCe
Confidence            34667889887777776652         5678888888741   11111111112235567887656566666556788


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-C-CcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-D-GRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      |.+.++.......+.      .........+++  .+.+..|+.+.. . +.|..+++..  .....+ +.     ..-.
T Consensus       477 I~v~d~dg~~~~~l~------~~~~~~P~giav--Dp~~g~ly~td~~~~~~I~~~~~dG--~~~~~l-~~-----~~l~  540 (699)
T 1n7d_A          477 VSVADTKGVKRKTLF------REQGSKPRAIVV--DPVHGFMYWTDWGTPAKIKKGGLNG--VDIYSL-VT-----ENIQ  540 (699)
T ss_dssp             EEEEBSSSCCEEEEC------CCSSCCCCCEEC--CSSSSCCEECCCSSSCCEEBCCSSS--CCCCEE-SC-----SSCS
T ss_pred             EEEEecCCCceEEEE------eCCCCCcceEEE--ccCCCcEEEcccCCCCeEEEEeCCC--CCeeEE-Ee-----CCCC
Confidence            999998765432111      111223456777  665554444332 2 6777777653  111111 00     0123


Q ss_pred             ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEee
Q psy17342        221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIK  300 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  300 (401)
                      ....|+++|..+.++++-...+.|..+++.+.....+............|++..       ..++++....+.|..+|..
T Consensus       541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~-------~~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-------DKVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET-------TEEEEECSTTTCEEEEETT
T ss_pred             CccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC-------CEEEEEeCCCCeEEEEEcc
Confidence            456789994445556666677889999987543222211111112233455433       3566666667889999877


Q ss_pred             CCCceEEEeecCCceEEEEE
Q psy17342        301 ENKPVHSFNEFRDYVMDVQW  320 (401)
Q Consensus       301 ~~~~~~~~~~~~~~v~~v~~  320 (401)
                      +++.+..+.........|++
T Consensus       614 ~G~~~~~i~~~~~~P~~i~v  633 (699)
T 1n7d_A          614 TGSDVNLLAENLLSPEDMVL  633 (699)
T ss_dssp             TEEEEECCCTTCSSCCCCCB
T ss_pred             CCCceEEeecCCCCCcEEEE
Confidence            77666555432223344443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.91  E-value=0.0044  Score=55.53  Aligned_cols=253  Identities=10%  Similarity=0.112  Sum_probs=136.5

Q ss_pred             ceEEEEecC-CCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe--cCCCeeEEEE-------eCCCCceEEE
Q psy17342         67 NVTYMDWST-QHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF--CQSPVLSCCF-------AKFNPYLILG  136 (401)
Q Consensus        67 ~v~~~~~~~-~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~~-------~~~~~~~l~~  136 (401)
                      ....|+|+| +...|.++..         ..+.|++.|.+++.........  .......++|       .+++..++++
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~---------~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyva  210 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYD---------GHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVA  210 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEE---------TEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEE
T ss_pred             CCCEEEEccCCCCEEEEEEC---------CCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEE
Confidence            467899999 4556666662         3467888898854433211111  1124889999       9988545555


Q ss_pred             EecCC------eEEEEECCC-CCCCc-e-eeccccccCCCCcEEEEEEeecC-CceEEEEEeCCCcEEEeecc-------
Q psy17342        137 GTYSG------QIVLWDTRV-QKKTP-V-HRTPLSVMAHTHPVFCMSVIGTQ-NAHNLISISNDGRLCSWSLE-------  199 (401)
Q Consensus       137 g~~dg------~v~iw~~~~-~~~~~-~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~~wd~~-------  199 (401)
                      -..++      .|.+.+... +.... . ... +....   ....++.  ++ ++.++++-..++.|..+|+.       
T Consensus       211 d~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~-v~~~~---~p~giav--dp~~g~LYvtd~~~g~V~r~d~~~~~~~~~  284 (496)
T 3kya_A          211 IDYDGKGDESPSVYIIKRNADGTFDDRSDIQL-IAAYK---QCNGATI--HPINGELYFNSYEKGQVFRLDLVDYFKTIK  284 (496)
T ss_dssp             ECCCTTGGGEEEEEEEECCTTSCCSTTSCEEE-EEEES---CCCCEEE--CTTTCCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred             eCCCCCcccCceEEEEecCCCCceeeccccee-eccCC---CceEEEE--cCCCCeEEEEECCCCEEEEEeccccccccc
Confidence            43331      255665333 12110 0 000 10011   2245666  77 45556666678889999987       


Q ss_pred             CCCC--Ccccc------ccccccccCCccceEEEEeccCCCCe-EEEEcCCceEEEEeCCCCCCCc--eeeecCC---CC
Q psy17342        200 MLSS--PQETR------DLQYNNKQTKNLAVLSLAFPQNDVNN-FVVGCEDGNVYSACRHGNKAGN--VECYEGH---EG  265 (401)
Q Consensus       200 ~~~~--~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~d~~i~~~~~~~~~~~~--~~~~~~~---~~  265 (401)
                      ....  +....      .+.   ..+.......++|+ ++++. +++-+..+.|+.++........  ...+-+.   .+
T Consensus       285 tg~~~tp~~~~~~g~~~~l~---~~~~~~~p~~ia~~-p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G  360 (496)
T 3kya_A          285 NGGSWDPIVKNNPNTFKQLF---TIADPSWEFQIFIH-PTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSG  360 (496)
T ss_dssp             TTCCCCCBGGGCTTTEEEEE---ECSSSSCCEEEEEC-TTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCC
T ss_pred             CceeecccccccccccceeE---ecCCCCCceEEEEc-CCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCc
Confidence            3221  00000      111   01123456789999 78885 5555677889987765432111  0122111   11


Q ss_pred             ------------cee-eeecC-------ccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecC-------------
Q psy17342        266 ------------PVV-GLSSH-------RAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR-------------  312 (401)
Q Consensus       266 ------------~v~-~i~~~-------~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------  312 (401)
                                  ... .+...       +.      +.++++-....+|+.++ .++ .+.++.+..             
T Consensus       361 ~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~------g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~  432 (496)
T 3kya_A          361 YRDDVGTEARMNNPCQGVFVKNPDYTGEEE------YDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGT  432 (496)
T ss_dssp             CBCCBGGGCBCSSEEEEEEEECTTCCSSCC------EEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCC
T ss_pred             ccCCcccccccCCCeEEEEEccccccccCC------CeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCcccccc
Confidence                        112 22332       22      46666666678888888 345 445554320             


Q ss_pred             -----------CceEEEEECCC-CCcEEEEEecCCEEEEEeCCCCCC
Q psy17342        313 -----------DYVMDVQWSPI-NPALFATVEVAGRVDLWNLNLDTE  347 (401)
Q Consensus       313 -----------~~v~~v~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~  347 (401)
                                 .....|+++++ +. ++++=.....|+.+++.....
T Consensus       433 ~dG~~~~~a~f~~P~gIavd~~~g~-lyVaD~~N~rIrki~~~~~~~  478 (496)
T 3kya_A          433 DDGDLREVARFRDVSGLVYDDVKEM-FYVHDQVGHTIRTISMEQEEN  478 (496)
T ss_dssp             CCEETTTTCCCSSEEEEEEETTTTE-EEEEETTTTEEEEEEECCCC-
T ss_pred             CCCCchhhhhcCCCcEEEEECCCCE-EEEEeCCCCEEEEEECCCCcc
Confidence                       13568888886 54 666666778888888876443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.85  E-value=0.032  Score=56.04  Aligned_cols=99  Identities=10%  Similarity=-0.008  Sum_probs=62.1

Q ss_pred             CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCC-----CceEEEEec-CCeEEEEECCCCCCCceeeccccccCCCCc
Q psy17342         96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFN-----PYLILGGTY-SGQIVLWDTRVQKKTPVHRTPLSVMAHTHP  169 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~g~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  169 (401)
                      .+.+.+++++.++........-...|.|+++.|..     ..+++.|.. |++|+|+++...+....+.  +   .....
T Consensus       531 g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~--L---~~~~~  605 (1158)
T 3ei3_A          531 GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEM--L---GGEII  605 (1158)
T ss_dssp             TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEE--C---CSSCC
T ss_pred             CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEE--C---CCCCC
Confidence            46677777764432222222346789999998643     258888886 9999999998644322211  1   11234


Q ss_pred             EEEEEEeecCCceEEEEEeCCCcEEEeecc
Q psy17342        170 VFCMSVIGTQNAHNLISISNDGRLCSWSLE  199 (401)
Q Consensus       170 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~  199 (401)
                      ..++.+.......+|..|-.||.+..+.++
T Consensus       606 p~si~l~~~~~~~~L~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          606 PRSILMTTFESSHYLLCALGDGALFYFGLN  635 (1158)
T ss_dssp             EEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred             CcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence            455555333455788899999998777665

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.82  E-value=0.021  Score=53.34  Aligned_cols=230  Identities=7%  Similarity=-0.055  Sum_probs=138.8

Q ss_pred             ceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC-ceEEEEEeCCCcEEEeeccCCCCCcccccc
Q psy17342        132 YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN-AHNLISISNDGRLCSWSLEMLSSPQETRDL  210 (401)
Q Consensus       132 ~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~  210 (401)
                      .++++  ..+.|+..+++.......    +.+ ..-.....++|  .+. +..+++-..++.|..+++... ....... 
T Consensus         8 ~Ll~s--~~~~I~~i~l~~~~~~~~----~~~-~~~~~~~~l~~--d~~~~~lywtD~~~~~I~r~~~~g~-~~~~v~~-   76 (628)
T 4a0p_A            8 FLLFS--RRADIRRISLETNNNNVA----IPL-TGVKEASALDF--DVTDNRIYWTDISLKTISRAFMNGS-ALEHVVE-   76 (628)
T ss_dssp             EEEEE--ETTEEEEEESSCTTCEEE----CCC-CSCSCEEEEEE--ETTTTEEEEEETTTTEEEEEETTSC-SCEEEEC-
T ss_pred             EEEEE--eCCcEEEEECCCCCcceE----EEc-CCCCceEEEEE--ECCCCEEEEEECCCCeEEEEECCCC-CcEEEEe-
Confidence            34443  467899999986543211    111 22345778998  654 445555566788888887631 1111111 


Q ss_pred             ccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEE-e
Q psy17342        211 QYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS-S  289 (401)
Q Consensus       211 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~-~  289 (401)
                       .     .......+++.+..++++++-...+.|.+.++.+.....  .....-.....|++.|..     +.++.+- +
T Consensus        77 -~-----g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~--l~~~~l~~P~~iavdp~~-----G~lY~tD~g  143 (628)
T 4a0p_A           77 -F-----GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV--LVWKDLDSPRALALDPAE-----GFMYWTEWG  143 (628)
T ss_dssp             -S-----SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE--EECSSCCCEEEEEEETTT-----TEEEEEECS
T ss_pred             -C-----CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE--EEeCCCCCcccEEEccCC-----CeEEEeCCC
Confidence             0     113456788874455566666778899999987543211  122333456899999874     5555554 2


Q ss_pred             CCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC
Q psy17342        290 YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN  369 (401)
Q Consensus       290 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  369 (401)
                      ..+.|...++... ....+...-.....++++++++.++++-...+.|...|+..... ..+.   ........+++.. 
T Consensus       144 ~~~~I~r~~~dG~-~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~---~~l~~P~glav~~-  217 (628)
T 4a0p_A          144 GKPKIDRAAMDGS-ERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA---DDLPHPFGLTQYQ-  217 (628)
T ss_dssp             SSCEEEEEETTSC-SCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE---ECCSCEEEEEEET-
T ss_pred             CCCEEEEEeCCCC-ceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee---ccCCCceEEEEEC-
Confidence            2567777777543 33333333557889999998776777777788999999976443 2222   2233455777764 


Q ss_pred             CcEEEEEecCCcEEEEEeccCc
Q psy17342        370 GTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       370 g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      +..+++-...+.|...|..+++
T Consensus       218 ~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          218 DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             TEEEEEETTTTEEEEEETTTCC
T ss_pred             CEEEEecCCCCEEEEEECCCCC
Confidence            4445555557788888876663

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.81  E-value=0.022  Score=53.16  Aligned_cols=296  Identities=7%  Similarity=-0.080  Sum_probs=152.9

Q ss_pred             ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEE
Q psy17342         67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLW  146 (401)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw  146 (401)
                      ....|++.|.+..|..+.++        ..+.|...+++ +.....+....-.....|++.+++.++.++-...+.|...
T Consensus       128 ~P~~Iavdp~~g~ly~tD~g--------~~~~I~r~~~d-G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~  198 (619)
T 3s94_A          128 QPRAIALDPSSGFMYWTDWG--------EVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS  198 (619)
T ss_dssp             CCCCEEEETTTTEEEEEECS--------SSCEEEEEETT-SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             CCceEEEecCCCeEEEeccC--------CCCEEEEEECC-CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence            35678888876666666631        24677777776 3333333222345678999999776666666667788888


Q ss_pred             ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccc---------ccccccc-
Q psy17342        147 DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRD---------LQYNNKQ-  216 (401)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~---------~~~~~~~-  216 (401)
                      +++........      .+......+|++  ..+ ..+++-...+.|...|..++........         +.....+ 
T Consensus       199 ~~dG~~~~~~~------~~~~~~P~gi~~--~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp  269 (619)
T 3s94_A          199 NLDGTNRQAVV------KGSLPHPFALTL--FED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQP  269 (619)
T ss_dssp             SSSCCEEC---------------CCCEEE--SSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSC
T ss_pred             cCCCCccEEEE------eCCCCCceEEEE--eCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCC
Confidence            88764332111      111112245665  333 4444444566777777654322111000         0000000 


Q ss_pred             -------CCccceEEEEeccC-----------------C--------CCeEEEEcCCceEEEEeCCCCCCCceeeecCCC
Q psy17342        217 -------TKNLAVLSLAFPQN-----------------D--------VNNFVVGCEDGNVYSACRHGNKAGNVECYEGHE  264 (401)
Q Consensus       217 -------~~~~~v~~~~~~~~-----------------~--------~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~  264 (401)
                             .....+..+++..+                 +        ..+|+.+ ..+.|+..++.......+......-
T Consensus       270 ~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~~l  348 (619)
T 3s94_A          270 NATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTDIVLQLEDI  348 (619)
T ss_dssp             CCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCEECCCSCC
T ss_pred             CccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccceEEEecCCCccceeEEecccc
Confidence                   00111111221100                 1        1122322 3345565565533221111101112


Q ss_pred             CceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        265 GPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       265 ~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      ..+..+++.+..     +.++++-...+.|+.+++........+...-.....+++.+.+..++++-+..+.|.+.++..
T Consensus       349 ~~~~~ld~d~~~-----~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G  423 (619)
T 3s94_A          349 RHAIAIDYDPVE-----GYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG  423 (619)
T ss_dssp             SSEEEEEEETTT-----TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CccEEEEEEcCC-----CeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCC
Confidence            345678888763     456666556788888887654333333322345678999876656777777788999999875


Q ss_pred             CCCCcceEEeecCCCCeEEEEecCCCcEEEEEec--CCcEEEEEecc
Q psy17342        345 DTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDE--KGAITMFDVGE  389 (401)
Q Consensus       345 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~v~iw~~~~  389 (401)
                      .. ...+.  ...-.....+++.|....|+....  .+.|...++..
T Consensus       424 ~~-~~~l~--~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG  467 (619)
T 3s94_A          424 TM-RKILI--SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDG  467 (619)
T ss_dssp             CS-CEEEE--CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             Ce-EEEEE--ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCC
Confidence            43 22221  223456789999987444444432  34565555543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.81  E-value=0.0026  Score=56.63  Aligned_cols=200  Identities=8%  Similarity=0.002  Sum_probs=113.2

Q ss_pred             cEEEEEEeecCC--ceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC----c
Q psy17342        169 PVFCMSVIGTQN--AHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED----G  242 (401)
Q Consensus       169 ~v~~~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----~  242 (401)
                      ....++|  .++  ...|+.+...+.|+.++..... ..   .+.     ........++++ ++++++++....    .
T Consensus       140 ~P~gvav--d~~s~~g~Lyv~D~~~~I~~id~~~g~-v~---~~~-----~~~~~P~giavd-~dG~lyVad~~~~~~~~  207 (433)
T 4hw6_A          140 NIWRMMF--DPNSNYDDLYWVGQRDAFRHVDFVNQY-VD---IKT-----TNIGQCADVNFT-LNGDMVVVDDQSSDTNT  207 (433)
T ss_dssp             CCCEEEE--CTTTTTCEEEEECBTSCEEEEETTTTE-EE---EEC-----CCCSCEEEEEEC-TTCCEEEEECCSCTTSE
T ss_pred             CCceEEE--ccccCCCEEEEEeCCCCEEEEECCCCE-EE---Eee-----cCCCCccEEEEC-CCCCEEEEcCCCCcccc
Confidence            3457888  663  3344444444889999875311 11   111     123457899999 788744443321    1


Q ss_pred             eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee--cCCceEEEEE
Q psy17342        243 NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE--FRDYVMDVQW  320 (401)
Q Consensus       243 ~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~v~~  320 (401)
                      .+...+...... ....+. .......++++|..     +.++++-..++.|+.+|..+++....+..  ....-..++|
T Consensus       208 gv~~~~~~~~~~-~~~~~~-~~~~P~giavd~~~-----G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~  280 (433)
T 4hw6_A          208 GIYLFTRASGFT-ERLSLC-NARGAKTCAVHPQN-----GKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVW  280 (433)
T ss_dssp             EEEEECGGGTTC-CEEEEE-ECSSBCCCEECTTT-----CCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEE
T ss_pred             eEEEEECCCCee-cccccc-ccCCCCEEEEeCCC-----CeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEE
Confidence            233333321111 011121 22344678888843     66776666678899999876665233322  1223357999


Q ss_pred             CCCCCcEEEEEecCCEEEEEeCCC--CCCC--cceEEeec------------CCCCeEEEEe---------cCCCcEEEE
Q psy17342        321 SPINPALFATVEVAGRVDLWNLNL--DTEV--PATSAIVE------------GAPALSRVTW---------TPNGTQLCV  375 (401)
Q Consensus       321 ~~~~~~~l~~~~~d~~i~iwd~~~--~~~~--~~~~~~~~------------~~~~v~~~~~---------s~~g~~l~~  375 (401)
                      +|+++.++++-...+.|+.+++..  +...  ..+.....            .-.....+++         .++|.++++
T Consensus       281 dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyva  360 (433)
T 4hw6_A          281 HPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFC  360 (433)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEE
T ss_pred             eCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEE
Confidence            999975667777778999988753  2211  11111000            0123567898         677777777


Q ss_pred             EecCCcEEEEEe
Q psy17342        376 GDEKGAITMFDV  387 (401)
Q Consensus       376 ~~~dg~v~iw~~  387 (401)
                      -...+.|+.++.
T Consensus       361 D~~n~~I~~~~~  372 (433)
T 4hw6_A          361 DRDSHTVRVLTP  372 (433)
T ss_dssp             ETTTTEEEEECT
T ss_pred             ECCCCEEEEECC
Confidence            667778888874

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.77  E-value=0.0051  Score=52.14  Aligned_cols=204  Identities=7%  Similarity=0.044  Sum_probs=114.3

Q ss_pred             ceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEee--cCCce---EEEEEeC---CCcEEEeeccCCCC
Q psy17342        132 YLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG--TQNAH---NLISISN---DGRLCSWSLEMLSS  203 (401)
Q Consensus       132 ~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~---~l~s~~~---dg~i~~wd~~~~~~  203 (401)
                      .+++.....+-+.+||+ .++....      +  ..+.++.+...+  .-.+.   ++++...   +++|.+|++.....
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~------~--~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~  111 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHS------Y--NTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG  111 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEE------E--CCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEE------c--cCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC
Confidence            35555567788999999 4443211      1  124566666522  11222   2333333   57899998742122


Q ss_pred             CccccccccccccCCccceEEEEe--ccCCCC-eEEEEcCCceEEEEeCCCC-----CCCceeeecCCCCceeeeecCcc
Q psy17342        204 PQETRDLQYNNKQTKNLAVLSLAF--PQNDVN-NFVVGCEDGNVYSACRHGN-----KAGNVECYEGHEGPVVGLSSHRA  275 (401)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~-~l~~~~~d~~i~~~~~~~~-----~~~~~~~~~~~~~~v~~i~~~~~  275 (401)
                      ......-...........+..+++  +|..+. ++++...+|.+..|++...     ..+.++.+.- .+.+..+...+.
T Consensus       112 ~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~  190 (355)
T 3amr_A          112 TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDE  190 (355)
T ss_dssp             CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred             ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCC
Confidence            211110000000001145666776  643454 6788888999999887432     2234556553 356778888877


Q ss_pred             CCCCCCCcEEEEEeCCCeEEEEEee-----CCCceEEEee-c-CCceEEEEE--CCCCC-cEEEEEecCCEEEEEeCC-C
Q psy17342        276 QGHIDFSHLYLTSSYDWSVKLWNIK-----ENKPVHSFNE-F-RDYVMDVQW--SPINP-ALFATVEVAGRVDLWNLN-L  344 (401)
Q Consensus       276 ~~~~~~~~~l~s~~~d~~i~iwd~~-----~~~~~~~~~~-~-~~~v~~v~~--~~~~~-~~l~~~~~d~~i~iwd~~-~  344 (401)
                            ...|..+-++.-|..++.+     +++.+..+.. + ...+..|++  .++++ ++|+++-.++.+.+||.. +
T Consensus       191 ------~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~  264 (355)
T 3amr_A          191 ------YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK  264 (355)
T ss_dssp             ------TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             ------CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC
Confidence                  5788888888666666644     2334433321 1 236788887  45555 566666577899999997 4


Q ss_pred             CCCCcce
Q psy17342        345 DTEVPAT  351 (401)
Q Consensus       345 ~~~~~~~  351 (401)
                      .+.+..+
T Consensus       265 ~~~vg~f  271 (355)
T 3amr_A          265 NKYVADF  271 (355)
T ss_dssp             CCEEEEE
T ss_pred             CcEEEEE
Confidence            4444444

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.72  E-value=0.0034  Score=52.84  Aligned_cols=238  Identities=11%  Similarity=0.032  Sum_probs=115.0

Q ss_pred             ceEEEEe-cC-----CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC-----CcEEEeeccC
Q psy17342        132 YLILGGT-YS-----GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND-----GRLCSWSLEM  200 (401)
Q Consensus       132 ~~l~~g~-~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~~wd~~~  200 (401)
                      .+++.|+ .+     ..+.+||..+.+-......+    ........+..    ++..++.|+.+     ..+.+||+.+
T Consensus        16 ~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p----~~r~~~~~~~~----~~~l~v~GG~~~~~~~~~~~~~d~~~   87 (301)
T 2vpj_A           16 VLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSIT----RKRRYVASVSL----HDRIYVIGGYDGRSRLSSVECLDYTA   87 (301)
T ss_dssp             EEEEECCEETTTEECCCEEEEETTTTEEEECCCCS----SCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTC
T ss_pred             EEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCC----hhhccccEEEE----CCEEEEEcCCCCCccCceEEEEECCC
Confidence            4555555 22     36888888766432221111    11111122222    56677777654     3588888765


Q ss_pred             CCC--CccccccccccccCCccceEEEEeccCCCCeEEEEcCC-----ceEEEEeCCCCCCCceeeecCCCCceeeeecC
Q psy17342        201 LSS--PQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED-----GNVYSACRHGNKAGNVECYEGHEGPVVGLSSH  273 (401)
Q Consensus       201 ~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  273 (401)
                      ...  -.....+..     .......+.+   ++.+++.|+.+     ..+.+||....+-..+..+......-..+.+ 
T Consensus        88 ~~~~~W~~~~~~p~-----~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-  158 (301)
T 2vpj_A           88 DEDGVWYSVAPMNV-----RRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-  158 (301)
T ss_dssp             CTTCCCEEECCCSS-----CCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-
T ss_pred             CCCCeeEECCCCCC-----CccceeEEEE---CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-
Confidence            320  111111111     1112222222   45677777643     3578888765443222222211111112222 


Q ss_pred             ccCCCCCCCcEEEEEeCC-----CeEEEEEeeCCCceEE--EeecCCceEEEEECCCCCcEEEEEecC-----CEEEEEe
Q psy17342        274 RAQGHIDFSHLYLTSSYD-----WSVKLWNIKENKPVHS--FNEFRDYVMDVQWSPINPALFATVEVA-----GRVDLWN  341 (401)
Q Consensus       274 ~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~~~~~~~l~~~~~d-----~~i~iwd  341 (401)
                       +      +.+++.|+.+     ..+.+||+.+.+-...  +.........+.+  ++ .+++.|+.+     ..+.+||
T Consensus       159 -~------~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd  228 (301)
T 2vpj_A          159 -S------GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYN  228 (301)
T ss_dssp             -T------TEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEE
T ss_pred             -C------CEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEe
Confidence             2      5777777754     3588888766432211  1111111122222  34 377777764     4688999


Q ss_pred             CCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC-----CcEEEEEeccCccceeeeee
Q psy17342        342 LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK-----GAITMFDVGEVGIACLKFIT  399 (401)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~v~iw~~~~~~~~~l~~~~  399 (401)
                      +.+.+-......+ ........+.  .++++++.|+.+     ..|.+||+++.+.+.+..++
T Consensus       229 ~~~~~W~~~~~~p-~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~  288 (301)
T 2vpj_A          229 IRTDSWTTVTSMT-TPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMG  288 (301)
T ss_dssp             TTTTEEEEECCCS-SCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEE
T ss_pred             CCCCcEEECCCCC-CcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCC
Confidence            9875422111100 0111112222  377788888765     35889999888766665544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.68  E-value=0.0064  Score=51.07  Aligned_cols=164  Identities=13%  Similarity=0.053  Sum_probs=97.7

Q ss_pred             CcEEEEEEeecCCceEEEEEe-CCCcEEEeeccCCCCCccccccccccc-cCCccceEEEEe---ccCCCCeEEEEc---
Q psy17342        168 HPVFCMSVIGTQNAHNLISIS-NDGRLCSWSLEMLSSPQETRDLQYNNK-QTKNLAVLSLAF---PQNDVNNFVVGC---  239 (401)
Q Consensus       168 ~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~---~~~~~~~l~~~~---  239 (401)
                      -.-.+++|  .+....|..++ ..++|..|+..... .... .+..... ......+..|.+   . +++.++++..   
T Consensus        13 ~yPE~~~w--d~~~g~~~vs~l~~g~V~~~~~~~~~-~~~~-~~~~~s~~g~~~~~~sGl~~~~~D-~~grL~vv~~~~~   87 (334)
T 2p9w_A           13 LTPEDTIY--DRTRQVFYQSNLYKGRIEVYNPKTQS-HFNV-VIDGASSNGDGEQQMSGLSLLTHD-NSKRLFAVMKNAK   87 (334)
T ss_dssp             CCCSCEEE--ETTTTEEEEEETTTTEEEEECTTTCC-EEEE-CCTTTCCSSCCSEEEEEEEESSSS-SCCEEEEEEEETT
T ss_pred             cCCcCccC--cCCCCEEEEEeccCCEEEEEcCCCCe-EEEE-ecCCccccCCCcceeeEEEEeccC-CCCcEEEEEcccc
Confidence            33446788  55445555555 78999999986311 1111 2211000 011234578899   5 5566666543   


Q ss_pred             ----------CCceEEEEeCC---CCCCCceeeecC-----------CCCceeeeecCccCCCCCCCcEEEEEeCC-CeE
Q psy17342        240 ----------EDGNVYSACRH---GNKAGNVECYEG-----------HEGPVVGLSSHRAQGHIDFSHLYLTSSYD-WSV  294 (401)
Q Consensus       240 ----------~d~~i~~~~~~---~~~~~~~~~~~~-----------~~~~v~~i~~~~~~~~~~~~~~l~s~~~d-~~i  294 (401)
                                .+..+..+|+.   +.+......+..           -......++..+.      ++..++++.. +.|
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~------GnaYVt~s~~~~~I  161 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD------GNSYVAFALGMPAI  161 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT------SCEEEEEEESSCEE
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC------CCEEEeCCCCCCeE
Confidence                      25779999987   333222222221           1134788999988      7899988887 777


Q ss_pred             EEEEeeCCCceEEEeec------CCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        295 KLWNIKENKPVHSFNEF------RDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       295 ~iwd~~~~~~~~~~~~~------~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      ...+.. ++.+..+...      ....+.|+++|++..+++..+ .|.|..+|+..
T Consensus       162 ~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~  215 (334)
T 2p9w_A          162 ARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSK  215 (334)
T ss_dssp             EEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSS
T ss_pred             EEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCC
Confidence            776654 3334433211      123679999999985555445 99999999984

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.68  E-value=0.022  Score=49.16  Aligned_cols=240  Identities=12%  Similarity=0.055  Sum_probs=124.0

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC----ceEEEEEeCC---
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN----AHNLISISND---  190 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~~~d---  190 (401)
                      -.....++|.|++ +++++ ...|.|.+++  .+........+ ...........|++  +|+    +...++-...   
T Consensus        30 l~~P~~ia~~pdG-~l~V~-e~~g~I~~i~--~g~~~~~~~~~-v~~~g~~~p~gia~--~pdf~~~g~lYv~~~~~~~~  102 (352)
T 2ism_A           30 LEVPWALAFLPDG-GMLIA-ERPGRIRLFR--EGRLSTYAELS-VYHRGESGLLGLAL--HPRFPQEPYVYAYRTVAEGG  102 (352)
T ss_dssp             CSCEEEEEECTTS-CEEEE-ETTTEEEEEE--TTEEEEEEECC-CCCSTTCSEEEEEE--CTTTTTSCEEEEEEEECTTS
T ss_pred             CCCceEEEEcCCC-eEEEE-eCCCeEEEEE--CCCccEeecce-EeecCCCCceeEEE--CCCCCCCCEEEEEEecCCCC
Confidence            3457899999988 55554 5679999998  33322221111 11222456788999  777    4444443332   


Q ss_pred             --CcEEEeeccCCCCC---ccccc-cccccccCCccceEEEEeccCCCCeEEEEcC-------------CceEEEEeCCC
Q psy17342        191 --GRLCSWSLEMLSSP---QETRD-LQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE-------------DGNVYSACRHG  251 (401)
Q Consensus       191 --g~i~~wd~~~~~~~---~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------d~~i~~~~~~~  251 (401)
                        +.|..++... ...   ..... +..  ..........++|. +++.++++.+.             .|.|..++..+
T Consensus       103 ~~~~v~r~~~~~-~~~~~~~~l~~~~p~--~~~~~h~~~~l~~~-pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG  178 (352)
T 2ism_A          103 LRNQVVRLRHLG-ERGVLDRVVLDGIPA--RPHGLHSGGRIAFG-PDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG  178 (352)
T ss_dssp             SEEEEEEEEECS-SCEEEEEEEEEEECC--CTTCCCCCCCEEEC-TTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred             CccEEEEEEeCC-CCcCceEEEEEeCCC--CCCCCcCCceEEEC-CCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC
Confidence              5677777653 111   11111 110  01111234588999 68865555322             25677777654


Q ss_pred             CC-----------CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeE------EEEEeeCCC-----------
Q psy17342        252 NK-----------AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSV------KLWNIKENK-----------  303 (401)
Q Consensus       252 ~~-----------~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i------~iwd~~~~~-----------  303 (401)
                      .-           ......-.++. ....++|+|..     +.++++-.....+      .|.-+..+.           
T Consensus       179 ~~p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~-----g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~  252 (352)
T 2ism_A          179 EPAPGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKT-----GELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRG  252 (352)
T ss_dssp             SBCTTCTTTTCTTSCTTEEEECCS-EECCCEECTTT-----CCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCC
T ss_pred             CCCCCCcccCCCCCCccEEEEcCC-CcccEEEECCC-----CCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCC
Confidence            10           00011112333 34688999843     5666654433331      233333222           


Q ss_pred             -------ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCC---cceEEeecCCCCeEEEEecCCCcEE
Q psy17342        304 -------PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV---PATSAIVEGAPALSRVTWTPNGTQL  373 (401)
Q Consensus       304 -------~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l  373 (401)
                             ++..+.. ......++| .+|. ++++.-..+.|...++......   ............+..+++.|||.++
T Consensus       253 ~~~~~~~p~~~~~~-~~ap~G~~~-~~G~-l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ly  329 (352)
T 2ism_A          253 NDPRYRDPLYFWPQ-GFPPGNLAF-FRGD-LYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALY  329 (352)
T ss_dssp             CCTTSCCCSEECTT-CCCEEEEEE-ETTE-EEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEE
T ss_pred             CCCCCcCCeEecCC-CCCCcceEE-ECCE-EEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEE
Confidence                   3333322 234567777 4554 6666666778888887654321   0111112234568999999999877


Q ss_pred             EEEe
Q psy17342        374 CVGD  377 (401)
Q Consensus       374 ~~~~  377 (401)
                      ++..
T Consensus       330 v~~~  333 (352)
T 2ism_A          330 VTTS  333 (352)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            6654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.64  E-value=0.031  Score=50.10  Aligned_cols=253  Identities=9%  Similarity=-0.027  Sum_probs=139.7

Q ss_pred             CeeEEEEeCC-CCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEE-----eecCCceEEEEEeCCC-c
Q psy17342        120 PVLSCCFAKF-NPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV-----IGTQNAHNLISISNDG-R  192 (401)
Q Consensus       120 ~v~~~~~~~~-~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~l~s~~~dg-~  192 (401)
                      ....|+|.|. +.+++++-...+.|++.|+..+........   -.........++|     -.++++..|+.+...+ .
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~---~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~  216 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNI---NTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK  216 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECC---TTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEcc---CccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence            3568999983 445555554456788888887664422211   0112235677776     0145676555555443 2


Q ss_pred             ------EEEeeccCCCCCcc-c--cccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCC-------CCCC-C
Q psy17342        193 ------LCSWSLEMLSSPQE-T--RDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRH-------GNKA-G  255 (401)
Q Consensus       193 ------i~~wd~~~~~~~~~-~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~-------~~~~-~  255 (401)
                            |.+++....+.... .  ..+.      .......++++|.++.++++-..++.|+.+|+.       .... .
T Consensus       217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~------~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t  290 (496)
T 3kya_A          217 GDESPSVYIIKRNADGTFDDRSDIQLIA------AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD  290 (496)
T ss_dssp             GGGEEEEEEEECCTTSCCSTTSCEEEEE------EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred             cccCceEEEEecCCCCceeecccceeec------cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence                  55555322111110 0  0111      112345778884466667777788899999986       3321 0


Q ss_pred             c--------eee-ec-CCCCceeeeecCccCCCCCCCc-EEEEEeCCCeEEEEEeeCCC-ce---EEEeec---C-----
Q psy17342        256 N--------VEC-YE-GHEGPVVGLSSHRAQGHIDFSH-LYLTSSYDWSVKLWNIKENK-PV---HSFNEF---R-----  312 (401)
Q Consensus       256 ~--------~~~-~~-~~~~~v~~i~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~-~~---~~~~~~---~-----  312 (401)
                      +        ... +. +.....+.|+++|+      ++ ++++-.....|+.++..... .+   ..+.+.   .     
T Consensus       291 p~~~~~~g~~~~l~~~~~~~~p~~ia~~p~------G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG  364 (496)
T 3kya_A          291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPT------GKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDD  364 (496)
T ss_dssp             CBGGGCTTTEEEEEECSSSSCCEEEEECTT------SSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCC
T ss_pred             ccccccccccceeEecCCCCCceEEEEcCC------CCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCC
Confidence            0        111 11 22334578999998      67 45555567889997765322 11   233321   0     


Q ss_pred             -------CceE-EEEEC-------CCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee-----------c---C------
Q psy17342        313 -------DYVM-DVQWS-------PINPALFATVEVAGRVDLWNLNLDTEVPATSAIV-----------E---G------  357 (401)
Q Consensus       313 -------~~v~-~v~~~-------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~---~------  357 (401)
                             .... .++..       +++. ++++-....+|+.++. ++ .+.++...-           +   +      
T Consensus       365 ~~~~a~f~~P~~gv~vd~~~~~~~~~g~-lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a  441 (496)
T 3kya_A          365 VGTEARMNNPCQGVFVKNPDYTGEEEYD-FYFVDRLNFCVRKVTP-EG-IVSTYAGRGASTSLADGNQWGTDDGDLREVA  441 (496)
T ss_dssp             BGGGCBCSSEEEEEEEECTTCCSSCCEE-EEEEEGGGTEEEEECT-TC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTC
T ss_pred             cccccccCCCeEEEEEccccccccCCCe-EEEEECCCCEEEEEeC-CC-CEEEEecccccccccCccccccCCCCchhhh
Confidence                   1233 45554       4554 6777777889999984 33 222222110           0   0      


Q ss_pred             -CCCeEEEEecCC-CcEEEEEecCCcEEEEEeccC
Q psy17342        358 -APALSRVTWTPN-GTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       358 -~~~v~~~~~s~~-g~~l~~~~~dg~v~iw~~~~~  390 (401)
                       -.....++++++ |.++++=.....|+.++++..
T Consensus       442 ~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          442 RFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             CCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             hcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence             123678999997 776666666788999998764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.63  E-value=0.0043  Score=52.37  Aligned_cols=237  Identities=8%  Similarity=-0.040  Sum_probs=113.5

Q ss_pred             ceEEEEec--CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC----CcEEEeeccCCCCCc
Q psy17342        132 YLILGGTY--SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND----GRLCSWSLEMLSSPQ  205 (401)
Q Consensus       132 ~~l~~g~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~~~~~  205 (401)
                      .+++.|+.  ...+.+||..+.+-......+.    .......+.+    ++..++.|+.+    ..+.+||+.+.. -.
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~----~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~d~~~~~-W~   83 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFE----KRRDAACVFW----DNVVYILGGSQLFPIKRMDCYNVVKDS-WY   83 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSC----CCBSCEEEEE----TTEEEEECCBSSSBCCEEEEEETTTTE-EE
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCc----ccceeEEEEE----CCEEEEEeCCCCCCcceEEEEeCCCCe-EE
Confidence            45555654  3568888887765332211111    1111122222    56677777654    457778876421 11


Q ss_pred             cccccccccccCCccceEEEEeccCCCCeEEEEcCC------ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCC
Q psy17342        206 ETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED------GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHI  279 (401)
Q Consensus       206 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~  279 (401)
                      ....++.     .......+.+   ++.+++.|+.+      ..+.+||....+-..+..+......-..+.+  .    
T Consensus        84 ~~~~~p~-----~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~----  149 (306)
T 3ii7_A           84 SKLGPPT-----PRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--N----  149 (306)
T ss_dssp             EEECCSS-----CCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T----
T ss_pred             ECCCCCc-----cccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--C----
Confidence            1111111     1111222222   45677777654      3478888775432222111111111111222  2    


Q ss_pred             CCCcEEEEEeC---------CCeEEEEEeeCCCceEE--EeecCCceEEEEECCCCCcEEEEEecC-----CEEEEEeCC
Q psy17342        280 DFSHLYLTSSY---------DWSVKLWNIKENKPVHS--FNEFRDYVMDVQWSPINPALFATVEVA-----GRVDLWNLN  343 (401)
Q Consensus       280 ~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~~~~~~~l~~~~~d-----~~i~iwd~~  343 (401)
                        +.+++.|+.         -..+.+||+.+.+-...  +......-..+.+  ++. +++.|+.+     ..+.+||+.
T Consensus       150 --~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~yd~~  224 (306)
T 3ii7_A          150 --GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDK-IFAVGGQNGLGGLDNVEYYDIK  224 (306)
T ss_dssp             --TEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEECCEETTEEBCCEEEEETT
T ss_pred             --CEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCE-EEEEeCCCCCCCCceEEEeeCC
Confidence              567777664         24478888876532111  1111111122222  443 77777654     468899988


Q ss_pred             CCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC-----CcEEEEEeccCccceeeeee
Q psy17342        344 LDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK-----GAITMFDVGEVGIACLKFIT  399 (401)
Q Consensus       344 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~v~iw~~~~~~~~~l~~~~  399 (401)
                      +.+-...-..+. .......+.+  ++++++.|+.+     ..+.+||+.+.+...+..++
T Consensus       225 ~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~  282 (306)
T 3ii7_A          225 LNEWKMVSPMPW-KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVR  282 (306)
T ss_dssp             TTEEEECCCCSC-CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEE
T ss_pred             CCcEEECCCCCC-CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcc
Confidence            754221111000 1111222333  77888888754     46899999998776665544

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.60  E-value=0.028  Score=48.45  Aligned_cols=244  Identities=11%  Similarity=0.064  Sum_probs=120.2

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCC--Cc---eEEEecCCCeeEEEEeCC---CCceEEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKT--TP---EFEFFCQSPVLSCCFAKF---NPYLILGG  137 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~--~~---~~~~~~~~~v~~~~~~~~---~~~~l~~g  137 (401)
                      .....|+|.|+|+.|+++.          ..|.|++++......  +.   ............|+++|+   +..+.++-
T Consensus        18 ~~P~~i~~~pdG~~l~V~e----------~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~   87 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITL----------RGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY   87 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEE----------TTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred             CCcEEEEEcCCCCEEEEEe----------CCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence            3478999999997566666          578999998542111  11   111112356789999995   43444443


Q ss_pred             ec-------CCeEEEEECCCCCCCce-eecc---cc---ccCCCCcEEEEEEeecCCceEEEEEeCC-------------
Q psy17342        138 TY-------SGQIVLWDTRVQKKTPV-HRTP---LS---VMAHTHPVFCMSVIGTQNAHNLISISND-------------  190 (401)
Q Consensus       138 ~~-------dg~v~iw~~~~~~~~~~-~~~~---~~---~~~~~~~v~~~~~~~~~~~~~l~s~~~d-------------  190 (401)
                      +.       ...|..+++........ .+..   +.   ...|.  ...+.|  .+++.+.++.+..             
T Consensus        88 ~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~--~pdG~Lyv~~Gd~~~~~~~q~~~~~~  163 (353)
T 2g8s_A           88 SEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVF--DGKGYLFIALGENNQRPTAQDLDKLQ  163 (353)
T ss_dssp             EEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEE--CSSSEEEEEECCTTCGGGGGCTTSCT
T ss_pred             eCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEE--CCCCcEEEEECCCCCCCccCCCCCCC
Confidence            22       23566666653321110 0000   00   11232  346888  8899766665442             


Q ss_pred             CcEEEeeccCCCCCc-c--------ccccccccccCCccceEEEEeccCCCCeEEEEcC-C--ceEEEEeCCCC------
Q psy17342        191 GRLCSWSLEMLSSPQ-E--------TRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE-D--GNVYSACRHGN------  252 (401)
Q Consensus       191 g~i~~wd~~~~~~~~-~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d--~~i~~~~~~~~------  252 (401)
                      |.|.-++... ..+. .        ..++.   ..++ .....++|+|.++.++++-.. +  ..|.+...-..      
T Consensus       164 g~I~ri~~dG-~~p~~npf~~~~~~~~~i~---a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~  238 (353)
T 2g8s_A          164 GKLVRLTDQG-EIPDDNPFIKESGVRAEIW---SYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLA  238 (353)
T ss_dssp             TEEEEEETTS-CCCTTCTTTTSTTSCTTEE---EECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTB
T ss_pred             eEEEEECCCC-CCCCCCCCcCCCCCCccEE---EEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCc
Confidence            3566555542 1000 0        00000   0111 246788999324544443221 1  12322111000      


Q ss_pred             ---------------------CCCceeeecCCCCceeeeecCccCCCC-CCCcEEEEEeCCCeEEEEEeeCCCceEEEe-
Q psy17342        253 ---------------------KAGNVECYEGHEGPVVGLSSHRAQGHI-DFSHLYLTSSYDWSVKLWNIKENKPVHSFN-  309 (401)
Q Consensus       253 ---------------------~~~~~~~~~~~~~~v~~i~~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-  309 (401)
                                           ...++..+..| .....+.+.+...-+ ..+.++++.-..+.|...++..++.+.... 
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~  317 (353)
T 2g8s_A          239 TWGINYSGFKIPEAKGEIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRI  317 (353)
T ss_dssp             CSSBCTTSSCCTTCCBSSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE
T ss_pred             cCCCCCCCCccCcccCCCCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEc
Confidence                                 00111222222 344556665321000 005677776677888888887654433321 


Q ss_pred             --ecCCceEEEEECCCCCcEEEE
Q psy17342        310 --EFRDYVMDVQWSPINPALFAT  330 (401)
Q Consensus       310 --~~~~~v~~v~~~~~~~~~l~~  330 (401)
                        .....+..+++.|+|. ++++
T Consensus       318 ~~~~~~rp~~v~~~pdG~-lyv~  339 (353)
T 2g8s_A          318 LTDRGQRIRDVRTGPDGY-LYVL  339 (353)
T ss_dssp             SGGGCCCEEEEEECTTSC-EEEE
T ss_pred             ccCCCCceeEEEECCCCc-EEEE
Confidence              2234789999999997 5554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.57  E-value=0.018  Score=49.93  Aligned_cols=145  Identities=10%  Similarity=0.092  Sum_probs=94.4

Q ss_pred             CCCCeEEEEcCCceEEEEeCCCCCCCceeeecCC----CCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC--
Q psy17342        230 NDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGH----EGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK--  303 (401)
Q Consensus       230 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--  303 (401)
                      .++..++++- ++.||..++....  ..+.+...    -..|..+..+|+      |.+||..+ +..|.|-.+..+.  
T Consensus        30 ~n~t~i~~a~-~n~iR~~~i~~~~--~Yk~L~~~~~i~f~~i~qlvlSps------G~lLAl~g-~~~V~Vv~LP~~~~~   99 (452)
T 3pbp_A           30 QNGTRIVFIQ-DNIIRWYNVLTDS--LYHSLNFSRHLVLDDTFHVISSTS------GDLLCLFN-DNEIFVMEVPWGYSN   99 (452)
T ss_dssp             TTTTEEEEEE-TTEEEEEETTTCS--SCEEEECTTTCCCCTTCEEEECTT------SSEEEEEC-SSEEEEEECCTTCSC
T ss_pred             cCCCEEEEEE-CCEEEEEECCCCC--cceEEecCcccccCceeEEEECCC------CCEEEEec-CCeEEEEEecCcccc
Confidence            4555555544 3788888876432  23333322    236788999999      78988887 6789998886321  


Q ss_pred             --------c--eEEEee------cCCceEEEEECCCCCc--EEEEEecCCEEEEEeCCCCCCCcc-eEE------eecCC
Q psy17342        304 --------P--VHSFNE------FRDYVMDVQWSPINPA--LFATVEVAGRVDLWNLNLDTEVPA-TSA------IVEGA  358 (401)
Q Consensus       304 --------~--~~~~~~------~~~~v~~v~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~-~~~------~~~~~  358 (401)
                              +  .+.+..      ...+|..+.|+|-+..  .|++-..|+.|++||+......+. +..      .....
T Consensus       100 ~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~  179 (452)
T 3pbp_A          100 VEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARV  179 (452)
T ss_dssp             CCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSC
T ss_pred             CcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCccc
Confidence                    1  122332      2467999999997532  688888999999999987444333 110      00112


Q ss_pred             CCeEEEEecCCCcEEEEEe--cCCcEEE
Q psy17342        359 PALSRVTWTPNGTQLCVGD--EKGAITM  384 (401)
Q Consensus       359 ~~v~~~~~s~~g~~l~~~~--~dg~v~i  384 (401)
                      ..|.+++|.+++-.|...+  ..|.|+-
T Consensus       180 ~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          180 NDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             CCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             ceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            5688999999887777655  6676654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.57  E-value=0.0036  Score=52.74  Aligned_cols=194  Identities=14%  Similarity=0.079  Sum_probs=93.0

Q ss_pred             CceEEEEEeCCC-----cEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCc-----eEEEEeC
Q psy17342        180 NAHNLISISNDG-----RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG-----NVYSACR  249 (401)
Q Consensus       180 ~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~~~~~  249 (401)
                      ++..++.|+.++     .+.+||..+.. -.....+..     .......+.+   ++.+++.|+.++     .+.+||.
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~-----~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~  131 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQ-WTSVANMRD-----RRSTLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNI  131 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTE-EEEECCCSS-----CCBSCEEEEE---TTEEEEEEEECSSCEEEEEEEEET
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCc-eeeCCCCCc-----cccceEEEEE---CCEEEEEcCCCCCccCceEEEEeC
Confidence            566777776543     47778876421 111111111     1111222222   456777776543     4777887


Q ss_pred             CCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC-------CeEEEEEeeCCCceE--EEeecCCceEEEEE
Q psy17342        250 HGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD-------WSVKLWNIKENKPVH--SFNEFRDYVMDVQW  320 (401)
Q Consensus       250 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~~~--~~~~~~~~v~~v~~  320 (401)
                      ...+-..+..+.........+.+  .      +.+++.|+.+       ..+.+||+.+.+-..  .+.........+.+
T Consensus       132 ~~~~W~~~~~~p~~r~~~~~~~~--~------~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  203 (302)
T 2xn4_A          132 KSNEWFHVAPMNTRRSSVGVGVV--G------GLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL  203 (302)
T ss_dssp             TTTEEEEECCCSSCCBSCEEEEE--T------TEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred             CCCeEeecCCCCCcccCceEEEE--C------CEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE
Confidence            65432222222111111111222  2      5677776642       347888876543211  11111111122222


Q ss_pred             CCCCCcEEEEEecC-----CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCC-----cEEEEEeccC
Q psy17342        321 SPINPALFATVEVA-----GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG-----AITMFDVGEV  390 (401)
Q Consensus       321 ~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-----~v~iw~~~~~  390 (401)
                        ++ .+++.|+.+     ..+.+||+.+.+-......... ......+.  .++++++.|+.++     .|.+||+.+.
T Consensus       204 --~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          204 --NN-LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-RRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             --TT-EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             --CC-EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc-cccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence              34 377777764     3688999876542211100000 11111222  3678888887654     4899999988


Q ss_pred             ccceee
Q psy17342        391 GIACLK  396 (401)
Q Consensus       391 ~~~~l~  396 (401)
                      +.+.+.
T Consensus       278 ~W~~~~  283 (302)
T 2xn4_A          278 KWTVVS  283 (302)
T ss_dssp             EEEECS
T ss_pred             eEEECC
Confidence            766553

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.56  E-value=0.03  Score=47.70  Aligned_cols=235  Identities=11%  Similarity=0.073  Sum_probs=116.4

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS  197 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd  197 (401)
                      ...+.+|.|.+.+ ..+++| ..|.| +...+.++. -.... .........+.++.+  .+ +..++ ++.++.|..  
T Consensus        35 ~~~~~~v~~~~~~-~~~~~G-~~g~i-~~s~DgG~t-W~~~~-~~~~~~~~~~~~i~~--~~-~~~~~-~g~~g~i~~--  103 (327)
T 2xbg_A           35 TATILDMSFIDRH-HGWLVG-VNATL-METRDGGQT-WEPRT-LVLDHSDYRFNSVSF--QG-NEGWI-VGEPPIMLH--  103 (327)
T ss_dssp             SSCEEEEEESSSS-CEEEEE-TTTEE-EEESSTTSS-CEECC-CCCSCCCCEEEEEEE--ET-TEEEE-EEETTEEEE--
T ss_pred             CCcEEEEEECCCC-cEEEEc-CCCeE-EEeCCCCCC-CeECC-CCCCCCCccEEEEEe--cC-CeEEE-EECCCeEEE--
Confidence            4578899987644 556655 56754 333333321 11100 111123457888888  54 44444 455564433  


Q ss_pred             ccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCC
Q psy17342        198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQG  277 (401)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  277 (401)
                      ....+..-......    ......+..+.+. +++..++++ .++.|+.-.-.+..  -.....++...+..+.+.|.  
T Consensus       104 S~DgG~tW~~~~~~----~~~~~~~~~i~~~-~~~~~~~~~-~~g~v~~S~DgG~t--W~~~~~~~~~~~~~~~~~~~--  173 (327)
T 2xbg_A          104 TTDGGQSWSQIPLD----PKLPGSPRLIKAL-GNGSAEMIT-NVGAIYRTKDSGKN--WQALVQEAIGVMRNLNRSPS--  173 (327)
T ss_dssp             ESSTTSSCEECCCC----TTCSSCEEEEEEE-ETTEEEEEE-TTCCEEEESSTTSS--EEEEECSCCCCEEEEEECTT--
T ss_pred             ECCCCCCceECccc----cCCCCCeEEEEEE-CCCCEEEEe-CCccEEEEcCCCCC--CEEeecCCCcceEEEEEcCC--
Confidence            22212111111110    0112346677776 445555555 45655432211122  11222345567888999886  


Q ss_pred             CCCCCcEEEEEeCCCeEEE-EEeeCCCceEEE-eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe-
Q psy17342        278 HIDFSHLYLTSSYDWSVKL-WNIKENKPVHSF-NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAI-  354 (401)
Q Consensus       278 ~~~~~~~l~s~~~d~~i~i-wd~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-  354 (401)
                          +.+++.+. ++.+.. .|- .++.-..+ ......+..+.+.+++. +++ ++.+|.+++.+...++.-..+... 
T Consensus       174 ----~~~~~~g~-~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~-~~~-~~~~G~~~~s~~D~G~tW~~~~~~~  245 (327)
T 2xbg_A          174 ----GEYVAVSS-RGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGR-LWM-IVNGGKIAFSDPDNSENWGELLSPL  245 (327)
T ss_dssp             ----SCEEEEET-TSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSC-EEE-EETTTEEEEEETTEEEEECCCBCTT
T ss_pred             ----CcEEEEEC-CCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCC-EEE-EeCCceEEEecCCCCCeeEeccCCc
Confidence                56666654 454433 332 12222222 22356788999999986 444 456788877642212111111100 


Q ss_pred             ecCCCCeEEEEecCCCcEEEEEecCCcE
Q psy17342        355 VEGAPALSRVTWTPNGTQLCVGDEKGAI  382 (401)
Q Consensus       355 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v  382 (401)
                      ......+..+.+.+++..++++. +|.|
T Consensus       246 ~~~~~~~~~v~~~~~~~~~~~g~-~g~i  272 (327)
T 2xbg_A          246 RRNSVGFLDLAYRTPNEVWLAGG-AGAL  272 (327)
T ss_dssp             SSCCSCEEEEEESSSSCEEEEES-TTCE
T ss_pred             ccCCcceEEEEecCCCEEEEEeC-CCeE
Confidence            11234588899998887776655 6656

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.47  E-value=0.032  Score=48.43  Aligned_cols=158  Identities=9%  Similarity=0.084  Sum_probs=101.3

Q ss_pred             ecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEec---CCCeeEEEEeCCCCceEEEEecCCeEEEEECC
Q psy17342         73 WSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC---QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTR  149 (401)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~  149 (401)
                      .+.+|..++.+-           ++.||.-++..+...+.+....   -..+..+..+|+| .+||..+ +..|.|-.+.
T Consensus        28 ~~~n~t~i~~a~-----------~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP   94 (452)
T 3pbp_A           28 SSQNGTRIVFIQ-----------DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVP   94 (452)
T ss_dssp             EETTTTEEEEEE-----------TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECC
T ss_pred             EEcCCCEEEEEE-----------CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCC-CEEEEec-CCeEEEEEec
Confidence            345777888887           7999999988554343333332   2368889999987 6777654 6789999988


Q ss_pred             CCCCCce--------eecccccc----CCCCcEEEEEEeecCC---ceEEEEEeCCCcEEEeeccC-CCCCccccccccc
Q psy17342        150 VQKKTPV--------HRTPLSVM----AHTHPVFCMSVIGTQN---AHNLISISNDGRLCSWSLEM-LSSPQETRDLQYN  213 (401)
Q Consensus       150 ~~~~~~~--------~~~~~~~~----~~~~~v~~~~~~~~~~---~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~  213 (401)
                      .+.....        ......+.    ....+|..+.|  +|-   +..|++-..|+.|++||+.. ...|. .......
T Consensus        95 ~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlW--HPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~  171 (452)
T 3pbp_A           95 WGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLF--HPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNN  171 (452)
T ss_dssp             TTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEE--CTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCS
T ss_pred             CccccCcccccccccceeEEEcCCcccCCCCceeEEEe--ccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccc
Confidence            4322111        00011111    13578999999  554   45899999999999999985 22233 1111100


Q ss_pred             --cccCCccceEEEEeccCCCCeEEEEc--CCceEEEE
Q psy17342        214 --NKQTKNLAVLSLAFPQNDVNNFVVGC--EDGNVYSA  247 (401)
Q Consensus       214 --~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~~~  247 (401)
                        ........|.+++|. .++-.|.+.+  ..|.|+-.
T Consensus       172 ~fg~d~~~~ev~S~~Fg-~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          172 SFGLDARVNDITDLEFS-KDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEESCSSCCCEEEEEEC-TTSSCEEEEECTTSCEEEEE
T ss_pred             ccCCCcccceEEEEEEc-CCCcEEEEEecCCCCCEEEE
Confidence              012233678999999 6777787755  88999864

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.45  E-value=0.048  Score=47.48  Aligned_cols=266  Identities=12%  Similarity=0.095  Sum_probs=162.7

Q ss_pred             CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEE
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMS  174 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  174 (401)
                      ....|.|-|+.++....+....    --+.-.+|.. +++|.-. ..++.|+|+++......       ......|.-=.
T Consensus        46 ~~~~vvIiDl~~~~~~~rrpi~----AdsAIMnP~~-~iiALra-g~~lQiFnle~K~klks-------~~~~e~VvfWk  112 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRRPIS----ADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKA-------HTMTDDVTFWK  112 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEEECC----CSEEEECSSS-SCEEEEE-TTEEEEEETTTTEEEEE-------EECSSCCCEEE
T ss_pred             CCCeEEEEECCCCCcceecccc----cceeeeCCCC-cEEEEec-CCeEEEEchHHhhhhcc-------eecCCCceEEE
Confidence            3458999999876665333332    3345568855 6666653 78999999998765422       12234565556


Q ss_pred             EeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc-------CCceEEEE
Q psy17342        175 VIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-------EDGNVYSA  247 (401)
Q Consensus       175 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------~d~~i~~~  247 (401)
                      |.  .+. .|+-.+ +..|..|++.....|...+..... +  ....|..-..+ ++.++++..+       -.|.+.+|
T Consensus       113 Wi--s~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~-L--~~~QIInY~~d-~~~kW~~l~GI~~~~~~v~G~mQLY  184 (494)
T 1bpo_A          113 WI--SLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSS-L--AGCQIINYRTD-AKQKWLLLTGISAQQNRVVGAMQLY  184 (494)
T ss_dssp             EE--ETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGG-G--TTCEEEEEEEC-TTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred             ec--CCC-eEEEEc-CCeeEEecccCCCCchhheecchh-c--ccceEEEEEEC-CCCCeEEEEeecccCCcccceEEEe
Confidence            63  232 344333 458999999765566666555431 1  24566666777 6777765432       24678899


Q ss_pred             eCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC---CeEEEEEeeCC---CceE-----EEe----ecC
Q psy17342        248 CRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD---WSVKLWNIKEN---KPVH-----SFN----EFR  312 (401)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~---~~~~-----~~~----~~~  312 (401)
                      ..+..   ....++||......+...-+.   ....+|+.+...   +++.|-++...   .+..     .+.    ...
T Consensus       185 S~er~---~sQ~ieGhaa~F~~~~~~g~~---~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~  258 (494)
T 1bpo_A          185 SVDRK---VSQPIEGHAASFAQFKMEGNA---EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN  258 (494)
T ss_dssp             ESTTC---CEEEECCSEEEEEEEECTTCS---SEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTT
T ss_pred             ecccc---ccchheeeeeeeEEEecCCCC---CCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCccccc
Confidence            88643   466788898777666554221   003455555543   78999988532   1111     111    112


Q ss_pred             CceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        313 DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       313 ~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      .-..++..++.-. ++..-+.-|.|++||+.++..+..-+  . ....|...+-+....=++.....|.|.--.+++..
T Consensus       259 DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~i~~nr--I-s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          259 DFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNR--I-SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             CCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEE--C-CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             CceeEEEecccCC-EEEEEecCceEEEEecccceeeeeec--c-cCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence            3455788888776 77888899999999999998654433  2 23445555555554445556688888877777653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.36  E-value=0.011  Score=50.03  Aligned_cols=238  Identities=12%  Similarity=0.026  Sum_probs=112.8

Q ss_pred             CceEEEEecC----CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC----C-----CcEEEee
Q psy17342        131 PYLILGGTYS----GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN----D-----GRLCSWS  197 (401)
Q Consensus       131 ~~~l~~g~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----d-----g~i~~wd  197 (401)
                      ..+++.|+.+    ..+.+||..+.+-......+.....|     +++.   .++..++.|+.    +     ..+.+||
T Consensus        25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-----~~~~---~~~~lyv~GG~~~~~~~~~~~~~~~~~d   96 (308)
T 1zgk_A           25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-----AGCV---VGGLLYAVGGRNNSPDGNTDSSALDCYN   96 (308)
T ss_dssp             CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-----EEEE---ETTEEEEECCEEEETTEEEECCCEEEEE
T ss_pred             CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-----eEEE---ECCEEEEECCCcCCCCCCeecceEEEEC
Confidence            3566666532    35888888765533221111111122     2222   25666666665    2     3577788


Q ss_pred             ccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC-----ceEEEEeCCCCCCCceeeecCCCCceeeeec
Q psy17342        198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED-----GNVYSACRHGNKAGNVECYEGHEGPVVGLSS  272 (401)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~  272 (401)
                      +.+.. -.....+..     .......+.+   ++.+++.|+.+     ..+.+||....+-..+..+......-..+.+
T Consensus        97 ~~~~~-W~~~~~~p~-----~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  167 (308)
T 1zgk_A           97 PMTNQ-WSPCAPMSV-----PRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL  167 (308)
T ss_dssp             TTTTE-EEECCCCSS-----CCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred             CCCCe-EeECCCCCc-----CccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence            76421 111111111     1112222222   45677776643     3477888765432222222111111112222


Q ss_pred             CccCCCCCCCcEEEEEeCC-----CeEEEEEeeCCCce--EEEeecCCceEEEEECCCCCcEEEEEecC-----CEEEEE
Q psy17342        273 HRAQGHIDFSHLYLTSSYD-----WSVKLWNIKENKPV--HSFNEFRDYVMDVQWSPINPALFATVEVA-----GRVDLW  340 (401)
Q Consensus       273 ~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~--~~~~~~~~~v~~v~~~~~~~~~l~~~~~d-----~~i~iw  340 (401)
                        .      +.+++.|+.+     ..+.+||+.+.+-.  ..+.........+.+  ++. +++.|+.+     ..+.+|
T Consensus       168 --~------~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~y  236 (308)
T 1zgk_A          168 --N------RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNC-IYAAGGYDGQDQLNSVERY  236 (308)
T ss_dssp             --T------TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEE
T ss_pred             --C------CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCE-EEEEeCCCCCCccceEEEE
Confidence              2      5777777754     35888887654311  111111111222333  443 77777764     568999


Q ss_pred             eCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC-----CcEEEEEeccCccceeeeee
Q psy17342        341 NLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK-----GAITMFDVGEVGIACLKFIT  399 (401)
Q Consensus       341 d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~v~iw~~~~~~~~~l~~~~  399 (401)
                      |+.+.+-......+.. ......+.  -++++++.|+.+     ..|.+||+.+.+...+..++
T Consensus       237 d~~~~~W~~~~~~p~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  297 (308)
T 1zgk_A          237 DVETETWTFVAPMKHR-RSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMT  297 (308)
T ss_dssp             ETTTTEEEECCCCSSC-CBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS
T ss_pred             eCCCCcEEECCCCCCC-ccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCC
Confidence            9887542211110000 11112222  267788888754     45889999988776665544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.18  E-value=0.093  Score=45.17  Aligned_cols=242  Identities=10%  Similarity=0.014  Sum_probs=119.4

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-E----ecCCCeeEEEEeCC---CCceEEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-F----FCQSPVLSCCFAKF---NPYLILGG  137 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~----~~~~~v~~~~~~~~---~~~~l~~g  137 (401)
                      .....|+|.|+|+ |+++.          .++.|++++.. ++  ..+. +    ........|+++|+   +..+.++-
T Consensus        29 ~~P~~ia~~pdG~-l~V~e----------~~g~I~~~d~~-G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~   94 (354)
T 3a9g_A           29 EVPWSIAPLGGGR-YLVTE----------RPGRLVLISPS-GK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYA   94 (354)
T ss_dssp             SCEEEEEEEETTE-EEEEE----------TTTEEEEECSS-CE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred             CCCeEEEEcCCCe-EEEEe----------CCCEEEEEeCC-Cc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence            4478899999996 55556          47999999743 43  1111 1    12356899999997   43444443


Q ss_pred             ec---C----CeEEEEECCCCCCCce-eecc---c-cccCCCCcEEEEEEeecCCceEEEEEeCC-------------Cc
Q psy17342        138 TY---S----GQIVLWDTRVQKKTPV-HRTP---L-SVMAHTHPVFCMSVIGTQNAHNLISISND-------------GR  192 (401)
Q Consensus       138 ~~---d----g~v~iw~~~~~~~~~~-~~~~---~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-------------g~  192 (401)
                      +.   +    +.|..|+......... .+..   + ....|.  ...+.|  .+++.++++.+..             |.
T Consensus        95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~--~pDG~Lyvt~G~~~~~~~~~d~~~~~G~  170 (354)
T 3a9g_A           95 SYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRF--GPDGMLYITTGDAADPRLAQDLSSLAGK  170 (354)
T ss_dssp             EEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEE--CTTSCEEEECCCTTCGGGGTCTTCCSSE
T ss_pred             eccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEE--CCCCcEEEEECCCCCCccccCCCCCCeE
Confidence            32   3    5677777665411110 0000   0 011233  356888  8899766664432             34


Q ss_pred             EEEeeccCCCCCc-c---ccccccccccCCccceEEEEeccCCCCeEEEEcCCc---eEEEEeCCCC-------------
Q psy17342        193 LCSWSLEMLSSPQ-E---TRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG---NVYSACRHGN-------------  252 (401)
Q Consensus       193 i~~wd~~~~~~~~-~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~i~~~~~~~~-------------  252 (401)
                      |.-++... ..+. .   ..++.   ..++ .....++|+|.++.++++-....   .|.+...-.+             
T Consensus       171 I~ri~~dG-~~p~~npf~~~~i~---a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~  245 (354)
T 3a9g_A          171 ILRVDEEG-RPPADNPFPNSPIW---SYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRG  245 (354)
T ss_dssp             EEEECTTS-CCCTTSSSTTCCEE---EECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCT
T ss_pred             EEEEcCCC-CCCCCCCCCCCcEE---EEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCC
Confidence            55444432 1000 0   00000   0011 23457888832555444432221   2333221110             


Q ss_pred             -CCCceeeecCCCCceeeeecCccCCCC-CCCcEEEEEeCCCeEEEEEeeCC-Cce--EEEe-ecCCceEEEEECCCCCc
Q psy17342        253 -KAGNVECYEGHEGPVVGLSSHRAQGHI-DFSHLYLTSSYDWSVKLWNIKEN-KPV--HSFN-EFRDYVMDVQWSPINPA  326 (401)
Q Consensus       253 -~~~~~~~~~~~~~~v~~i~~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~-~~~--~~~~-~~~~~v~~v~~~~~~~~  326 (401)
                       ...++..+.........+.+.....-+ ..+.++++.-..+.|...++... +..  ..+. .....+..+++.|+|. 
T Consensus       246 ~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~-  324 (354)
T 3a9g_A          246 EFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGG-  324 (354)
T ss_dssp             TSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSC-
T ss_pred             CCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCc-
Confidence             001222331112345566664211000 01567776666778888888753 322  1222 1235688999999996 


Q ss_pred             EEEEE
Q psy17342        327 LFATV  331 (401)
Q Consensus       327 ~l~~~  331 (401)
                      ++++.
T Consensus       325 lyv~~  329 (354)
T 3a9g_A          325 ILIST  329 (354)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55554

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.16  E-value=0.097  Score=44.85  Aligned_cols=184  Identities=9%  Similarity=0.090  Sum_probs=99.0

Q ss_pred             cCCeEEEEECCCCCCCceeeccccccC-----CCCcEEEEEEeecCCce-EEEEE-eC--CCcEEEeeccCCCCCccccc
Q psy17342        139 YSGQIVLWDTRVQKKTPVHRTPLSVMA-----HTHPVFCMSVIGTQNAH-NLISI-SN--DGRLCSWSLEMLSSPQETRD  209 (401)
Q Consensus       139 ~dg~v~iw~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~-~l~s~-~~--dg~i~~wd~~~~~~~~~~~~  209 (401)
                      .+|.|.++|.++...... .  +.+.+     ..-....+.+....++. +|+.+ ..  +.++.+|+++..........
T Consensus        81 ~~G~I~~~d~~~~~~~~~-~--l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~  157 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVS-E--LEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK  157 (355)
T ss_dssp             -CCEEEEEETTSSSCCEE-E--CEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEecCCCCCceE-E--EEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe
Confidence            689999999875432211 1  11222     23466777764332342 34444 33  46788888865322111110


Q ss_pred             cccccccCCccceEEEEeccCCCCeEEEEc-----------------CCceEEEEeCCCCCCCceeeecCCCCceeeeec
Q psy17342        210 LQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-----------------EDGNVYSACRHGNKAGNVECYEGHEGPVVGLSS  272 (401)
Q Consensus       210 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------------~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~  272 (401)
                      -.   ....-.....+.+. +++.+.++..                 ..|.|+.++..  +   +..+...-..-+.++|
T Consensus       158 ~~---~g~~~~~pND~~v~-~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~---~~~~~~~l~~pNGia~  228 (355)
T 3sre_A          158 TI---RHKLLPSVNDIVAV-GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D---VRVVAEGFDFANGINI  228 (355)
T ss_dssp             EE---CCTTCSSEEEEEEE-ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C---CEEEEEEESSEEEEEE
T ss_pred             cc---ccCCCCCCceEEEe-CCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--e---EEEeecCCcccCcceE
Confidence            00   11123457788888 6777666543                 23566666652  2   2222222344688999


Q ss_pred             CccCCCCCCCcEE-EEEeCCCeEEEEEeeC-CCc--eEEEeecCCceEEEEECC-CCCcEEEEEecC-CEEEEEeC
Q psy17342        273 HRAQGHIDFSHLY-LTSSYDWSVKLWNIKE-NKP--VHSFNEFRDYVMDVQWSP-INPALFATVEVA-GRVDLWNL  342 (401)
Q Consensus       273 ~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~-~~~--~~~~~~~~~~v~~v~~~~-~~~~~l~~~~~d-~~i~iwd~  342 (401)
                      +|+      ++.+ ++-+..+.|..|++.. ++.  ...+ ...+..-.+++.+ +|. +.+++..+ +.|..|+.
T Consensus       229 spD------g~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~-lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          229 SPD------GKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGD-LWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             CTT------SSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCC-EEEEEESCHHHHHSCCT
T ss_pred             CCC------CCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCc-EEEEecCCceEEEEECC
Confidence            998      5544 4455678999999864 322  1233 2246678899999 586 55555433 23444443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.13  E-value=0.2  Score=50.65  Aligned_cols=265  Identities=12%  Similarity=0.090  Sum_probs=150.9

Q ss_pred             CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEE
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMS  174 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  174 (401)
                      ....|.|-|+.++..+.+....    --+.-.+|.. ++++.- ...++.|+|+++......       .....+|.-=.
T Consensus        46 ~~~~vvIidl~~~~~~~rrpi~----AdsAIMnP~~-~iiALr-ag~~lQiFnl~~k~klks-------~~~~e~VvfWk  112 (1630)
T 1xi4_A           46 EQAQVVIIDMNDPSNPIRRPIS----ADSAIMNPAS-KVIALK-AGKTLQIFNIEMKSKMKA-------HTMTDDVTFWK  112 (1630)
T ss_pred             CCceEEEEECCCCCCccccccc----chhhccCCCc-ceEEEe-cCCeEEEeehHHhhhhcc-------cccCCCceEEE
Confidence            3458889999876554333222    2233457744 566655 368899999988765421       22234566556


Q ss_pred             EeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc-------CCceEEEE
Q psy17342        175 VIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-------EDGNVYSA  247 (401)
Q Consensus       175 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------~d~~i~~~  247 (401)
                      |  -.. +.|+-.+ +..|..|++.....|...+..... +  ....|..-..+ ++.++++..+       -.|.+.+|
T Consensus       113 W--is~-~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~-L--~~~QIinY~~d-~~~kW~~l~gi~~~~~~v~G~mQLy  184 (1630)
T 1xi4_A          113 W--ISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSS-L--AGCQIINYRTD-AKQKWLLLTGISAQQNRVVGAMQLY  184 (1630)
T ss_pred             e--cCC-CeeEEEc-CCeEEEeccCCCCccHHHHhcchh-c--ccCeeEEeeeC-CCCCeEEEEeeccCCCcccceeeee
Confidence            6  333 3333333 347999999754556555554431 1  23556666666 6666655332       35778899


Q ss_pred             eCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC---CCeEEEEEeeCC---CceEE------Eee---cC
Q psy17342        248 CRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY---DWSVKLWNIKEN---KPVHS------FNE---FR  312 (401)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~---~~~~~------~~~---~~  312 (401)
                      +....   ....+.||.+....+......   ....+++.+..   .+++.|-++...   .+...      +-.   ..
T Consensus       185 S~er~---~sQ~iegha~~F~~~~~~~~~---~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~  258 (1630)
T 1xi4_A          185 SVDRK---VSQPIEGHAASFAQFKMEGNA---EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN  258 (1630)
T ss_pred             ecccc---cchhhhHhHhhhheeccCCCC---CCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCccccc
Confidence            87643   345667887766554443211   00344444432   368888888442   11111      111   12


Q ss_pred             CceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        313 DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       313 ~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      .-..++..++.-. ++...+.-|.|.+||+.++..+..-+.  . ...|...+-+....-++.....|.|.--.+...
T Consensus       259 Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t~~~i~~~ri--s-~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~  332 (1630)
T 1xi4_A          259 DFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRI--S-GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (1630)
T ss_pred             CcceEEEeccccC-EEEEEecCceEEEEecccchhhhhccc--c-CCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence            2344677777765 777788899999999999987654332  1 233433343433333444456777776666654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.96  E-value=0.15  Score=43.79  Aligned_cols=242  Identities=14%  Similarity=0.058  Sum_probs=124.9

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC----ceEEEEEeC---C
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN----AHNLISISN---D  190 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~~~---d  190 (401)
                      -.....|+|.|++ +++++ ..+|.|.+++. .+. ......+ ...........|++  +|+    +.+.++-+.   +
T Consensus        28 l~~P~~ia~~pdG-~l~V~-e~~g~I~~~d~-~G~-~~~~~~~-v~~~g~~g~~gia~--~pdf~~~g~lyv~~~~~~~~  100 (354)
T 3a9g_A           28 LEVPWSIAPLGGG-RYLVT-ERPGRLVLISP-SGK-KLVASFD-VANVGEAGLLGLAL--HPEFPKKSWVYLYASYFAEG  100 (354)
T ss_dssp             CSCEEEEEEEETT-EEEEE-ETTTEEEEECS-SCE-EEEEECC-CCCSTTCSEEEEEE--CTTTTTSCEEEEEEEEECGG
T ss_pred             CCCCeEEEEcCCC-eEEEE-eCCCEEEEEeC-CCc-eEeeccc-eeecCCCceeeEEe--CCCCCcCCEEEEEEeccCCC
Confidence            3457899999987 55554 56799999873 332 2222111 11122346788998  776    444444332   3


Q ss_pred             ----CcEEEeeccCCC-CCcccccc-ccccccCCccceEEEEeccCCCCeEEEEcC-------------CceEEEEeCCC
Q psy17342        191 ----GRLCSWSLEMLS-SPQETRDL-QYNNKQTKNLAVLSLAFPQNDVNNFVVGCE-------------DGNVYSACRHG  251 (401)
Q Consensus       191 ----g~i~~wd~~~~~-~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------d~~i~~~~~~~  251 (401)
                          ..|..++..... .......+ ... ..........|+|. +++.++++.+.             .|.|..++..+
T Consensus       101 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~-~~~~~h~~~~l~~~-pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG  178 (354)
T 3a9g_A          101 GHIRNRVIRGRLDGSTFKLKEVKTLIDGI-PGAYIHNGGRIRFG-PDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG  178 (354)
T ss_dssp             GCEEEEEEEEEECSSSCCEEEEEEEEEEE-ECCSSCCCCCEEEC-TTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS
T ss_pred             CCcceEEEEEEECCCCcCcCccEEEEEcC-CCCCCcCCceEEEC-CCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC
Confidence                567777765321 01000000 000 00111234578898 68876555332             25676666653


Q ss_pred             CCC------CceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC---eEEEEEeeCC------------------Cc
Q psy17342        252 NKA------GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW---SVKLWNIKEN------------------KP  304 (401)
Q Consensus       252 ~~~------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~------------------~~  304 (401)
                      .-.      .....-.++.. ...++|+|..     +.++++-....   .|.+.  ..+                  .+
T Consensus       179 ~~p~~npf~~~~i~a~G~rn-p~Gla~d~~~-----g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p  250 (354)
T 3a9g_A          179 RPPADNPFPNSPIWSYGHRN-PQGIDWHRAS-----GVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDP  250 (354)
T ss_dssp             CCCTTSSSTTCCEEEECCSC-CCEEEECTTT-----CCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCC
T ss_pred             CCCCCCCCCCCcEEEEccCC-cceEEEeCCC-----CCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCC
Confidence            210      00111123433 3578999843     56555543222   23322  222                  23


Q ss_pred             eEEEeecCCceEEEEEC-------CCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeec-CCCCeEEEEecCCCcEEEEE
Q psy17342        305 VHSFNEFRDYVMDVQWS-------PINPALFATVEVAGRVDLWNLNLDTEVPATSAIVE-GAPALSRVTWTPNGTQLCVG  376 (401)
Q Consensus       305 ~~~~~~~~~~v~~v~~~-------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~  376 (401)
                      +..+.........++|.       .+|. ++++.-..+.|...++.............. ....+..+++.|||.++++.
T Consensus       251 ~~~~~~~~~ap~G~~~y~g~~fp~~~G~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          251 VIDTGSETWAPSGASFVHGDMFPGLRGW-LLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             SEECTTCCCCEEEEEECCSSSCGGGTTE-EEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred             EeecCCCCcCCcceEEECCCCCcccCCc-EEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence            33331113457788884       4564 677666677888888875322211111122 23568999999999766665


Q ss_pred             e
Q psy17342        377 D  377 (401)
Q Consensus       377 ~  377 (401)
                      .
T Consensus       330 ~  330 (354)
T 3a9g_A          330 S  330 (354)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.96  E-value=0.16  Score=43.76  Aligned_cols=255  Identities=15%  Similarity=0.150  Sum_probs=125.1

Q ss_pred             CCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC----ceEEEEEeC-----
Q psy17342        119 SPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN----AHNLISISN-----  189 (401)
Q Consensus       119 ~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~~~-----  189 (401)
                      .....|+|.|++..++++ ...|.|++++............+............+++  +|+    +...++-+.     
T Consensus        18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~--~pdf~~~g~lYv~~~~~~~~g   94 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVL--APDFAQSRRIWLSYSEVGDDG   94 (353)
T ss_dssp             SSEEEEEECSTTCCEEEE-ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEE--CTTHHHHCEEEEEEEEECSSS
T ss_pred             CCcEEEEEcCCCCEEEEE-eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEE--CCCCCCCCEEEEEEeCCCCCC
Confidence            457899999988325544 56899999985432111111111001122345688998  775    444444322     


Q ss_pred             --CCcEEEeeccCCCCC-cccccc-ccccc-cCCccceEEEEeccCCCCeEEEEcC-------------CceEEEEeCCC
Q psy17342        190 --DGRLCSWSLEMLSSP-QETRDL-QYNNK-QTKNLAVLSLAFPQNDVNNFVVGCE-------------DGNVYSACRHG  251 (401)
Q Consensus       190 --dg~i~~wd~~~~~~~-~~~~~~-~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~-------------d~~i~~~~~~~  251 (401)
                        ...|..+++...... .....+ ..... .........|+|. +++.++++.+.             .|.|.-++..+
T Consensus        95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~-pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG  173 (353)
T 2g8s_A           95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD-GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG  173 (353)
T ss_dssp             CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC-SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred             CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC-CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence              234666665431110 000000 00000 0111224578999 68765555433             24677777654


Q ss_pred             CCC----------Cceeee-cCCCCceeeeecCccCCCCCCCcEEEEEeC-CCeEEEEEeeCC-----------------
Q psy17342        252 NKA----------GNVECY-EGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DWSVKLWNIKEN-----------------  302 (401)
Q Consensus       252 ~~~----------~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~-----------------  302 (401)
                      ...          .....+ .++. ....++|.|..     +.++++-.. ++.=.|.-+..+                 
T Consensus       174 ~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~-----g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~  247 (353)
T 2g8s_A          174 EIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWS-----NALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGF  247 (353)
T ss_dssp             CCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTT-----TEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSS
T ss_pred             CCCCCCCCcCCCCCCccEEEEcCc-CccceEEECCC-----CCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCC
Confidence            310          001111 2343 35688999842     555554332 111122211111                 


Q ss_pred             --------------CceEEEeecCCceEEEEECC-------CCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCe
Q psy17342        303 --------------KPVHSFNEFRDYVMDVQWSP-------INPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPAL  361 (401)
Q Consensus       303 --------------~~~~~~~~~~~~v~~v~~~~-------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v  361 (401)
                                    .++..+.. ......++|..       ++. ++++.-..+.|...++..++..............+
T Consensus       248 ~~~~~~~~~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~-l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp  325 (353)
T 2g8s_A          248 KIPEAKGEIVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQK-LFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRI  325 (353)
T ss_dssp             CCTTCCBSSCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTTE-EEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCE
T ss_pred             ccCcccCCCCCCccCCeEEeCC-CcCcceeEEECCccCcccCCc-EEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCce
Confidence                          12223332 23567788864       354 67766677888888887543221111111223468


Q ss_pred             EEEEecCCCcEEEEEe-cCCcEEEEEe
Q psy17342        362 SRVTWTPNGTQLCVGD-EKGAITMFDV  387 (401)
Q Consensus       362 ~~~~~s~~g~~l~~~~-~dg~v~iw~~  387 (401)
                      ..+++.|||.++++.. .+|  +||.+
T Consensus       326 ~~v~~~pdG~lyv~td~~~g--~I~ri  350 (353)
T 2g8s_A          326 RDVRTGPDGYLYVLTDESSG--ELLKV  350 (353)
T ss_dssp             EEEEECTTSCEEEEECSTTE--EEEEE
T ss_pred             eEEEECCCCcEEEEEeCCCC--EEEEE
Confidence            8999999998665433 344  45554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.87  E-value=0.11  Score=43.88  Aligned_cols=220  Identities=10%  Similarity=0.041  Sum_probs=99.1

Q ss_pred             cEEEEEeCcCCCCCceEEEecC-CCeeEEEEeCCCCceEEEEec----C-------CeEEEEECCCCCCCceeecccccc
Q psy17342         97 GVCLIWNTKFKKTTPEFEFFCQ-SPVLSCCFAKFNPYLILGGTY----S-------GQIVLWDTRVQKKTPVHRTPLSVM  164 (401)
Q Consensus        97 ~~v~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~g~~----d-------g~v~iw~~~~~~~~~~~~~~~~~~  164 (401)
                      ..+.+||..+++-.. .....+ .......... +..+++.|+.    +       ..+.+||..+.+-......+....
T Consensus        13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~   90 (315)
T 4asc_A           13 EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC   90 (315)
T ss_dssp             TEEEEEETTTTEEEE-EECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred             CceEEECCCCCeEec-CCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence            678899998755322 111111 1122222233 3366666663    1       126778887654322111111011


Q ss_pred             CCCCcEEEEEEeecCCceEEEEEeCC--------CcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEE
Q psy17342        165 AHTHPVFCMSVIGTQNAHNLISISND--------GRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFV  236 (401)
Q Consensus       165 ~~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  236 (401)
                      .|     +++.   -++..++.|+.+        ..+.+||..+.. -.....++.     .......+.   .++.+++
T Consensus        91 ~~-----~~~~---~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~-----~r~~~~~~~---~~~~iyv  153 (315)
T 4asc_A           91 LF-----GLGE---ALNSIYVVGGREIKDGERCLDSVMCYDRLSFK-WGESDPLPY-----VVYGHTVLS---HMDLVYV  153 (315)
T ss_dssp             SC-----EEEE---ETTEEEEECCEESSTTCCBCCCEEEEETTTTE-EEECCCCSS-----CCBSCEEEE---ETTEEEE
T ss_pred             ce-----eEEE---ECCEEEEEeCCcCCCCCcccceEEEECCCCCc-EeECCCCCC-----cccceeEEE---ECCEEEE
Confidence            11     2222   256666666632        347788876421 111111111     111222222   2456777


Q ss_pred             EEcC-C-----ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC-----eEEEEEeeCCCce
Q psy17342        237 VGCE-D-----GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW-----SVKLWNIKENKPV  305 (401)
Q Consensus       237 ~~~~-d-----~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~  305 (401)
                      .|+. +     ..+.+||....+-..+..+.........+.+  .      +.+++.|+.++     .+.+||+.+.+-.
T Consensus       154 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~------~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  225 (315)
T 4asc_A          154 IGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--D------GRIIVAAGVTDTGLTSSAEVYSITDNKWA  225 (315)
T ss_dssp             ECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T------TEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred             EeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--C------CEEEEEeccCCCCccceEEEEECCCCeEE
Confidence            7765 2     3578888775432222222111111112222  2      57788887654     4778887664321


Q ss_pred             EE--EeecCCceEEEEECCCCCcEEEEEecCC--------------EEEEEeCCCCC
Q psy17342        306 HS--FNEFRDYVMDVQWSPINPALFATVEVAG--------------RVDLWNLNLDT  346 (401)
Q Consensus       306 ~~--~~~~~~~v~~v~~~~~~~~~l~~~~~d~--------------~i~iwd~~~~~  346 (401)
                      ..  +.........+.+  ++. +++.|+.++              .+.+||+.+.+
T Consensus       226 ~~~~~p~~r~~~~~~~~--~~~-l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          226 PFEAFPQERSSLSLVSL--VGT-LYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             EECCCSSCCBSCEEEEE--TTE-EEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             ECCCCCCcccceeEEEE--CCE-EEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            11  1111111222222  343 677776542              46778887653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.84  E-value=0.045  Score=45.84  Aligned_cols=153  Identities=10%  Similarity=0.086  Sum_probs=78.6

Q ss_pred             CCCeEEEEcCC-----ceEEEEeCCCCC---CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC-----CeEEEE
Q psy17342        231 DVNNFVVGCED-----GNVYSACRHGNK---AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD-----WSVKLW  297 (401)
Q Consensus       231 ~~~~l~~~~~d-----~~i~~~~~~~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d-----~~i~iw  297 (401)
                      ++.+++.|+.+     ..+.+||....+   -..+..+.........+.+  +      +.+++.|+.+     ..+.+|
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~------~~lyv~GG~~~~~~~~~~~~~  133 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--G------DMIYVSGGFDGSRRHTSMERY  133 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--T------TEEEEECCBCSSCBCCEEEEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--C------CEEEEEcccCCCcccceEEEE
Confidence            46677777754     358888887654   2222222211111112222  2      5677777654     357888


Q ss_pred             EeeCCCceE--EEeecCCceEEEEECCCCCcEEEEEecC-----CEEEEEeCCCCCCCcceEEeecCC-CCeEEEEecCC
Q psy17342        298 NIKENKPVH--SFNEFRDYVMDVQWSPINPALFATVEVA-----GRVDLWNLNLDTEVPATSAIVEGA-PALSRVTWTPN  369 (401)
Q Consensus       298 d~~~~~~~~--~~~~~~~~v~~v~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~s~~  369 (401)
                      |..+.+-..  .+......-..+.+  ++. +++.|+.+     ..+.+||+.+.+-.....  .... .....+.  .+
T Consensus       134 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~~~--~~  206 (301)
T 2vpj_A          134 DPNIDQWSMLGDMQTAREGAGLVVA--SGV-IYCLGGYDGLNILNSVEKYDPHTGHWTNVTP--MATKRSGAGVAL--LN  206 (301)
T ss_dssp             ETTTTEEEEEEECSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTTTEEEEECC--CSSCCBSCEEEE--ET
T ss_pred             cCCCCeEEECCCCCCCcccceEEEE--CCE-EEEECCCCCCcccceEEEEeCCCCcEEeCCC--CCcccccceEEE--EC
Confidence            876653221  11111111122222  454 77777654     468889987654221110  1111 1112222  26


Q ss_pred             CcEEEEEecC-----CcEEEEEeccCccceeeee
Q psy17342        370 GTQLCVGDEK-----GAITMFDVGEVGIACLKFI  398 (401)
Q Consensus       370 g~~l~~~~~d-----g~v~iw~~~~~~~~~l~~~  398 (401)
                      +++++.|+.+     ..+.+||+.+.+...+..+
T Consensus       207 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~  240 (301)
T 2vpj_A          207 DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM  240 (301)
T ss_dssp             TEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred             CEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC
Confidence            7777888764     4689999998866655443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.82  E-value=0.075  Score=44.86  Aligned_cols=150  Identities=15%  Similarity=0.101  Sum_probs=73.8

Q ss_pred             CCCeEEEEcCC--------ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC-C-----CeEEE
Q psy17342        231 DVNNFVVGCED--------GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-D-----WSVKL  296 (401)
Q Consensus       231 ~~~~l~~~~~d--------~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d-----~~i~i  296 (401)
                      ++.+++.|+.+        ..+.+||....+-..+..+.........+.+  .      +.+++.|+. +     ..+.+
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~------~~iyv~GG~~~~~~~~~~~~~  169 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH--M------DLVYVIGGKGSDRKCLNKMCV  169 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T------TEEEEECCBCTTSCBCCCEEE
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE--C------CEEEEEeCCCCCCcccceEEE
Confidence            45666777632        3478888865432222222111111111221  2      567777775 2     36888


Q ss_pred             EEeeCCCc--eEEEeecCCceEEEEECCCCCcEEEEEecCC-----EEEEEeCCCCCCCcceEEeecC-CCCeEEEEecC
Q psy17342        297 WNIKENKP--VHSFNEFRDYVMDVQWSPINPALFATVEVAG-----RVDLWNLNLDTEVPATSAIVEG-APALSRVTWTP  368 (401)
Q Consensus       297 wd~~~~~~--~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~s~  368 (401)
                      ||..+.+-  +..+......-..+.+  ++. +++.|+.++     .+.+||+.+.+-.....  ... ......+.  -
T Consensus       170 yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~~--~  242 (315)
T 4asc_A          170 YDPKKFEWKELAPMQTARSLFGATVH--DGR-IIVAAGVTDTGLTSSAEVYSITDNKWAPFEA--FPQERSSLSLVS--L  242 (315)
T ss_dssp             EETTTTEEEECCCCSSCCBSCEEEEE--TTE-EEEEEEECSSSEEEEEEEEETTTTEEEEECC--CSSCCBSCEEEE--E
T ss_pred             EeCCCCeEEECCCCCCchhceEEEEE--CCE-EEEEeccCCCCccceEEEEECCCCeEEECCC--CCCcccceeEEE--E
Confidence            88866431  1111111111122222  443 777777654     58889987753221110  111 11112222  2


Q ss_pred             CCcEEEEEecCC--------------cEEEEEeccCcccee
Q psy17342        369 NGTQLCVGDEKG--------------AITMFDVGEVGIACL  395 (401)
Q Consensus       369 ~g~~l~~~~~dg--------------~v~iw~~~~~~~~~l  395 (401)
                      ++++++.|+.++              .|.+||+.+.+.+.+
T Consensus       243 ~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          243 VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence            677777777642              478899888765544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.65  E-value=0.074  Score=44.54  Aligned_cols=220  Identities=13%  Similarity=0.040  Sum_probs=98.9

Q ss_pred             cEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC-----CeEEEEECCCCCCCceeeccccccCCCCcEE
Q psy17342         97 GVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS-----GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVF  171 (401)
Q Consensus        97 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  171 (401)
                      ..+.+||..+.+-...-.......-.+++..  +..+++.|+.+     ..+.+||..+.+-......+    .......
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p----~~r~~~~  103 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMR----DRRSTLG  103 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCS----SCCBSCE
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCC----ccccceE
Confidence            4578888875432111001111111122222  33677777654     35888888776533222111    1111112


Q ss_pred             EEEEeecCCceEEEEEeCCC-----cEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC-----
Q psy17342        172 CMSVIGTQNAHNLISISNDG-----RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED-----  241 (401)
Q Consensus       172 ~~~~~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----  241 (401)
                      .+.+    ++..++.|+.++     .+.+||+.+.. -.....+.     ........+.+   ++.+++.|+.+     
T Consensus       104 ~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p-----~~r~~~~~~~~---~~~iyv~GG~~~~~~~  170 (302)
T 2xn4_A          104 AAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNE-WFHVAPMN-----TRRSSVGVGVV---GGLLYAVGGYDVASRQ  170 (302)
T ss_dssp             EEEE----TTEEEEEEEECSSCEEEEEEEEETTTTE-EEEECCCS-----SCCBSCEEEEE---TTEEEEECCEETTTTE
T ss_pred             EEEE----CCEEEEEcCCCCCccCceEEEEeCCCCe-EeecCCCC-----CcccCceEEEE---CCEEEEEeCCCCCCCc
Confidence            2222    566777776553     36677765411 11111111     11111222222   45666666542     


Q ss_pred             --ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC-----CeEEEEEeeCCCceE--EEeecC
Q psy17342        242 --GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD-----WSVKLWNIKENKPVH--SFNEFR  312 (401)
Q Consensus       242 --~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~--~~~~~~  312 (401)
                        ..+.+||.....-..+..+.........+.+  +      +.+++.|+.+     ..+.+||+.+.+-..  .+....
T Consensus       171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~------~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r  242 (302)
T 2xn4_A          171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--N------NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCR  242 (302)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T------TEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred             cccEEEEEeCCCCcEEECCCCccccccccEEEE--C------CEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcc
Confidence              3478888865432222222211111112222  2      5777777764     368888887643211  111111


Q ss_pred             CceEEEEECCCCCcEEEEEecCC-----EEEEEeCCCCC
Q psy17342        313 DYVMDVQWSPINPALFATVEVAG-----RVDLWNLNLDT  346 (401)
Q Consensus       313 ~~v~~v~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~  346 (401)
                      .....+.+  ++. +++.|+.++     .+.+||+.+.+
T Consensus       243 ~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          243 RNAGVCAV--NGL-LYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             BSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             ccCeEEEE--CCE-EEEECCcCCCcccccEEEEcCCCCe
Confidence            11112222  443 777777553     47888887653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.61  E-value=0.048  Score=47.03  Aligned_cols=55  Identities=13%  Similarity=0.011  Sum_probs=26.1

Q ss_pred             eEEEEEeeCCCc--eEEEeecCCceEEEEECCCCCcEEEEEecCC------EEEEEeCCCCCCCcc
Q psy17342        293 SVKLWNIKENKP--VHSFNEFRDYVMDVQWSPINPALFATVEVAG------RVDLWNLNLDTEVPA  350 (401)
Q Consensus       293 ~i~iwd~~~~~~--~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~  350 (401)
                      .+.+||+.+.+-  +..+......-.++.  .+++ +++.|+.++      .+.++++++++....
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~-i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNS-LLIIGGETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEEEE--ETTE-EEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             eEEEEecCCCceeeCCCCCCCcccceeEE--eCCE-EEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence            577888876532  222222111122222  3454 777777542      466668887665443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.60  E-value=0.32  Score=42.47  Aligned_cols=244  Identities=8%  Similarity=0.073  Sum_probs=140.8

Q ss_pred             EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECC
Q psy17342         70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTR  149 (401)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~  149 (401)
                      +.-.+|..+.+|.=+           ..++.|+|+++...+..+.+  ...|.-=.|-.+  +.|+--+ +..|+-|++.
T Consensus        70 sAIMnP~~~iiALra-----------g~~lQiFnle~K~klks~~~--~e~VvfWkWis~--~~l~lVT-~taVyHWsi~  133 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-----------GKTLQIFNIEMKSKMKAHTM--TDDVTFWKWISL--NTVALVT-DNAVYHWSME  133 (494)
T ss_dssp             EEEECSSSSCEEEEE-----------TTEEEEEETTTTEEEEEEEC--SSCCCEEEEEET--TEEEEEC-SSEEEEEESS
T ss_pred             eeeeCCCCcEEEEec-----------CCeEEEEchHHhhhhcceec--CCCceEEEecCC--CeEEEEc-CCeeEEeccc
Confidence            345678876666555           78999999997766655544  456766677653  3454443 5789999997


Q ss_pred             CCCC-CceeeccccccCCCCcEEEEEEeecCCceEEEEEe-------CCCcEEEeeccCCCCCccccccccccccCCccc
Q psy17342        150 VQKK-TPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS-------NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA  221 (401)
Q Consensus       150 ~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  221 (401)
                      .... .........+.  ...|..-..  +++.++++..+       -.|.+.+|..+.  ...+.       ..+|...
T Consensus       134 ~~s~P~kvFdR~~~L~--~~QIInY~~--d~~~kW~~l~GI~~~~~~v~G~mQLYS~er--~~sQ~-------ieGhaa~  200 (494)
T 1bpo_A          134 GESQPVKMFDRHSSLA--GCQIINYRT--DAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQP-------IEGHAAS  200 (494)
T ss_dssp             SSCCCEEEEECCGGGT--TCEEEEEEE--CTTSSEEEEEEEEEETTEEEEEEEEEESTT--CCEEE-------ECCSEEE
T ss_pred             CCCCchhheecchhcc--cceEEEEEE--CCCCCeEEEEeecccCCcccceEEEeeccc--cccch-------heeeeee
Confidence            6321 11222111221  234444444  77877766443       246788898864  12221       2335444


Q ss_pred             eEEEEec--cCCCCeEEEEcC---CceEEEEeCCCC-CCCc------eeeec---CCCCceeeeecCccCCCCCCCcEEE
Q psy17342        222 VLSLAFP--QNDVNNFVVGCE---DGNVYSACRHGN-KAGN------VECYE---GHEGPVVGLSSHRAQGHIDFSHLYL  286 (401)
Q Consensus       222 v~~~~~~--~~~~~~l~~~~~---d~~i~~~~~~~~-~~~~------~~~~~---~~~~~v~~i~~~~~~~~~~~~~~l~  286 (401)
                      ...+...  +.....++.+..   .+.+++.++... ....      +..+.   ...+--.++..++.      -..+.
T Consensus       201 F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k------ygviy  274 (494)
T 1bpo_A          201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK------HDVVF  274 (494)
T ss_dssp             EEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT------TTEEE
T ss_pred             eEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEeccc------CCEEE
Confidence            4444333  011123333333   367888887533 1111      01111   11223345666666      35677


Q ss_pred             EEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCc
Q psy17342        287 TSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVP  349 (401)
Q Consensus       287 s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  349 (401)
                      .-..-|.|.+||+.++.++..-+-....|..-+-+..... +++....|.|.--.++....++
T Consensus       275 viTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~G-i~~Vnr~GqVl~v~v~e~~ivp  336 (494)
T 1bpo_A          275 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAG-IIGVNRKGQVLSVCVEEENIIP  336 (494)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTE-EEEEETTCEEEEEEECTTTHHH
T ss_pred             EEecCceEEEEecccceeeeeecccCCceEEecccCCCCc-EEEEccCceEEEEEEccccchh
Confidence            7778999999999999999887776777766666555443 4455578888777776655443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.57  E-value=0.14  Score=45.70  Aligned_cols=108  Identities=8%  Similarity=0.158  Sum_probs=59.6

Q ss_pred             ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC------CCCceeeeecCccCCCCCCCcEEEEEeC----
Q psy17342        221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG------HEGPVVGLSSHRAQGHIDFSHLYLTSSY----  290 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~------~~~~v~~i~~~~~~~~~~~~~~l~s~~~----  290 (401)
                      ....|+|. ++++++++-...+.|++++........+..+..      .......|+++|+-.. + +.++++-+.    
T Consensus        28 ~P~~~a~~-pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~-~-g~lYv~~s~~~~~  104 (454)
T 1cru_A           28 KPHALLWG-PDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKN-N-PYIYISGTFKNPK  104 (454)
T ss_dssp             SEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTT-S-CEEEEEEEEECTT
T ss_pred             CceEEEEc-CCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCc-C-CEEEEEEeccccC
Confidence            56789999 788766665544578888754322222222221      2455679999995100 0 455555542    


Q ss_pred             --------CCeEEEEEeeCC-------CceEE-Eee-cCCceEEEEECCCCCcEEEEEe
Q psy17342        291 --------DWSVKLWNIKEN-------KPVHS-FNE-FRDYVMDVQWSPINPALFATVE  332 (401)
Q Consensus       291 --------d~~i~iwd~~~~-------~~~~~-~~~-~~~~v~~v~~~~~~~~~l~~~~  332 (401)
                              ...|.-+++...       +.+.. +.. .......++|.|+|. ++++.+
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G  162 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG  162 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence                    235555665432       11111 221 123468999999997 555544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.55  E-value=0.064  Score=45.03  Aligned_cols=153  Identities=7%  Similarity=0.032  Sum_probs=77.2

Q ss_pred             CCCeEEEEcCC----ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC------CeEEEEEee
Q psy17342        231 DVNNFVVGCED----GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD------WSVKLWNIK  300 (401)
Q Consensus       231 ~~~~l~~~~~d----~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~  300 (401)
                      ++.+++.|+.+    ..+.+||....+-..+..+.........+.+  .      +.+++.|+.+      ..+.+||..
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~------~~iyv~GG~~~~~~~~~~~~~~d~~  126 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--E------GKIYTSGGSEVGNSALYLFECYDTR  126 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--T------TEEEEECCBBTTBSCCCCEEEEETT
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--C------CEEEEECCCCCCCcEeeeEEEEeCC
Confidence            45677777754    5678888875432222222211111112222  2      5777777765      458888887


Q ss_pred             CCCceEE--EeecCCceEEEEECCCCCcEEEEEec---------CCEEEEEeCCCCCCCcceEEeecCC-CCeEEEEecC
Q psy17342        301 ENKPVHS--FNEFRDYVMDVQWSPINPALFATVEV---------AGRVDLWNLNLDTEVPATSAIVEGA-PALSRVTWTP  368 (401)
Q Consensus       301 ~~~~~~~--~~~~~~~v~~v~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~s~  368 (401)
                      +.+-...  +......-..+.+  ++. +++.|+.         -..+.+||+.+.+-.....  .... ..-..+.+  
T Consensus       127 ~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~~~--  199 (306)
T 3ii7_A          127 TESWHTKPSMLTQRCSHGMVEA--NGL-IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP--MIEARKNHGLVFV--  199 (306)
T ss_dssp             TTEEEEECCCSSCCBSCEEEEE--TTE-EEEECCEESCTTTCEECCCEEEEETTTTEEEEECC--CSSCCBSCEEEEE--
T ss_pred             CCceEeCCCCcCCcceeEEEEE--CCE-EEEECCCCCCCCcccccceEEEeCCCCCeEEECCC--ccchhhcceEEEE--
Confidence            6532111  1111111122222  443 6666664         3458889988754211110  1111 11112222  


Q ss_pred             CCcEEEEEecC-----CcEEEEEeccCccceeeee
Q psy17342        369 NGTQLCVGDEK-----GAITMFDVGEVGIACLKFI  398 (401)
Q Consensus       369 ~g~~l~~~~~d-----g~v~iw~~~~~~~~~l~~~  398 (401)
                      ++++++.|+.+     ..+.+||+.+.+...+..+
T Consensus       200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~  234 (306)
T 3ii7_A          200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM  234 (306)
T ss_dssp             TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCC
T ss_pred             CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCC
Confidence            67777777654     3689999988766655443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.48  E-value=0.66  Score=44.57  Aligned_cols=272  Identities=11%  Similarity=0.056  Sum_probs=141.4

Q ss_pred             ccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342         65 NRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIV  144 (401)
Q Consensus        65 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~  144 (401)
                      ...|.+|.-..+| +|..|+          .+| +..||-..-+............|.++.-..++  .|..|+.+| +.
T Consensus        21 ~n~V~~I~qD~~G-~lWigT----------~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g--~lWigT~~G-l~   85 (758)
T 3ott_A           21 ASVVSCFLQDSEG-LIWIGS----------NKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT--YLYMGTDNG-IL   85 (758)
T ss_dssp             CCCEEEEEECTTS-CEEEEE----------SSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT--EEEEEETTE-EE
T ss_pred             cceEEEEEECCCC-CEEEEE----------CCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC--cEEEEeCCC-eE
Confidence            3669999988888 677777          455 56676421110000000113468888766644  566666555 78


Q ss_pred             EEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342        145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS  224 (401)
Q Consensus       145 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (401)
                      .||..+.....    +.  ......|.++..   .++. |..++.+ .+..++....  .........  .......|.+
T Consensus        86 ~yd~~~~~f~~----~~--~~~~~~i~~i~~---~~g~-lWigt~~-Gl~~~~~~~~--~~~~~~~~~--~~l~~~~i~~  150 (758)
T 3ott_A           86 VYNYRADRYEQ----PE--TDFPTDVRTMAL---QGDT-LWLGALN-GLYTYQLQSR--KLTSFDTRR--NGLPNNTIYS  150 (758)
T ss_dssp             EEETTTTEECC----CS--CCCCSCEEEEEE---ETTE-EEEEETT-EEEEEETTTC--CEEEECHHH--HCCSCSCEEE
T ss_pred             EEeCCCCEEEC----cc--cCCCceEEEEEe---cCCc-EEEEcCC-cceeEeCCCC--eEEEeccCC--CCcCCCeEEE
Confidence            99987654321    01  112335776653   3454 5555555 5777876531  111110000  0112345788


Q ss_pred             EEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec--C----CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE--G----HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       225 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~--~----~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      +... .++. +.+|+.+| +..++.....   ...+.  .    ....|.++...+.      +..|..|.. +-+..+|
T Consensus       151 i~~d-~~g~-lWigt~~G-l~~~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~d~~------~~~lWigt~-~Gl~~~~  217 (758)
T 3ott_A          151 IIRT-KDNQ-IYVGTYNG-LCRYIPSNGK---FEGIPLPVHSSQSNLFVNSLLEDTT------RQCVWIGTE-GYLFQYF  217 (758)
T ss_dssp             EEEC-TTCC-EEEEETTE-EEEEETTTTE---EEEECCCCCTTCSSCCEEEEEEETT------TTEEEEEEE-EEEEEEE
T ss_pred             EEEc-CCCC-EEEEeCCC-HhhCccCCCc---eEEecCCCccccccceeEEEEEECC------CCEEEEEEC-CCCeEEc
Confidence            8766 4444 45566554 6667765332   11111  1    1223677766654      344444443 4577888


Q ss_pred             eeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee-----cCCCCeEEEEecCCCcEE
Q psy17342        299 IKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV-----EGAPALSRVTWTPNGTQL  373 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~g~~l  373 (401)
                      ..+++...........|.++...++|. + ..|+. +-+.+++..+.... .+....     -....|.++....+|.+.
T Consensus       218 ~~~~~~~~~~~l~~~~i~~i~~d~~g~-l-WigT~-~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lW  293 (758)
T 3ott_A          218 PSTGQIKQTEAFHNNSIKSLALDGNGD-L-LAGTD-NGLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHNIW  293 (758)
T ss_dssp             TTTTEEEEEEEEEEEEEEEEEECTTCC-E-EEEET-TEEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCCEE
T ss_pred             CCCCeEEeccCCCCCeEEEEEEcCCCC-E-EEEeC-CceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCCEE
Confidence            765543221111234688888888886 3 34444 45788887654321 111000     013458888888777644


Q ss_pred             EEEecCCcEEEE
Q psy17342        374 CVGDEKGAITMF  385 (401)
Q Consensus       374 ~~~~~dg~v~iw  385 (401)
                       .|+..| +.++
T Consensus       294 -iGT~~G-l~~~  303 (758)
T 3ott_A          294 -LGTDYG-ISLS  303 (758)
T ss_dssp             -EEESSS-EEEE
T ss_pred             -EEeCCc-cccc
Confidence             455556 5443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.45  E-value=0.21  Score=42.13  Aligned_cols=151  Identities=15%  Similarity=0.076  Sum_probs=72.9

Q ss_pred             CCCeEEEEcCC-------ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC------CCeEEEE
Q psy17342        231 DVNNFVVGCED-------GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY------DWSVKLW  297 (401)
Q Consensus       231 ~~~~l~~~~~d-------~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~------d~~i~iw  297 (401)
                      ++.+++.|+.+       ..+.+||....+-..+..+......- ++.. ..      +.+++.|+.      -..+.+|
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~------~~iyv~GG~~~~~~~~~~~~~y  180 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HN------GMIYCLGGKTDDKKCTNRVFIY  180 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ET------TEEEEECCEESSSCBCCCEEEE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-EC------CEEEEEcCCCCCCCccceEEEE
Confidence            45677777653       34777887654322221111111111 1111 12      567777764      2358888


Q ss_pred             EeeCCCceEE--EeecCCceEEEEECCCCCcEEEEEecC-----CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCC
Q psy17342        298 NIKENKPVHS--FNEFRDYVMDVQWSPINPALFATVEVA-----GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNG  370 (401)
Q Consensus       298 d~~~~~~~~~--~~~~~~~v~~v~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  370 (401)
                      |+.+.+-...  +.........+.+  ++. +++.|+.+     ..+.+||+.+.+-......+. .......+  ..++
T Consensus       181 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~--~~~~  254 (318)
T 2woz_A          181 NPKKGDWKDLAPMKTPRSMFGVAIH--KGK-IVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ-ERSSISLV--SLAG  254 (318)
T ss_dssp             ETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS-CCBSCEEE--EETT
T ss_pred             cCCCCEEEECCCCCCCcccceEEEE--CCE-EEEEcCcCCCCccceEEEEECCCCeEEECCCCCC-cccceEEE--EECC
Confidence            8876532111  1111111122222  343 67777643     357789988754322111100 01111222  2367


Q ss_pred             cEEEEEecC--------------CcEEEEEeccCcccee
Q psy17342        371 TQLCVGDEK--------------GAITMFDVGEVGIACL  395 (401)
Q Consensus       371 ~~l~~~~~d--------------g~v~iw~~~~~~~~~l  395 (401)
                      ++++.|+.+              ..+.+||+.+.+...+
T Consensus       255 ~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          255 SLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             EEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             EEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            777777754              3588999988765544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.44  E-value=0.4  Score=48.59  Aligned_cols=220  Identities=12%  Similarity=0.185  Sum_probs=125.6

Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCc
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKN  219 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  219 (401)
                      ..+|.|.|+..+...  .+.++   .-.+.|    .  +|..+.++.-. ..++.++++++.. ......+        .
T Consensus        47 ~~~vvIidl~~~~~~--~rrpi---~AdsAI----M--nP~~~iiALra-g~~lQiFnl~~k~-klks~~~--------~  105 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNP--IRRPI---SADSAI----M--NPASKVIALKA-GKTLQIFNIEMKS-KMKAHTM--------T  105 (1630)
T ss_pred             CceEEEEECCCCCCc--ccccc---cchhhc----c--CCCcceEEEec-CCeEEEeehHHhh-hhccccc--------C
Confidence            347889998876532  11111   111111    1  56666555543 6789999998622 2222222        2


Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCC----CCceeeeecCccCCCCCCCcEEEEEe------
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGH----EGPVVGLSSHRAQGHIDFSHLYLTSS------  289 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~~~~~~l~s~~------  289 (401)
                      ..|.-=.|-  +.+.|+..+ +..|+-|++.+ ...+.+.|..|    ...|..-..+++      .++++..|      
T Consensus       106 e~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~-~s~P~k~fdR~~~L~~~QIinY~~d~~------~kW~~l~gi~~~~~  175 (1630)
T 1xi4_A          106 DDVTFWKWI--SLNTVALVT-DNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAK------QKWLLLTGISAQQN  175 (1630)
T ss_pred             CCceEEEec--CCCeeEEEc-CCeEEEeccCC-CCccHHHHhcchhcccCeeEEeeeCCC------CCeEEEEeeccCCC
Confidence            245555665  344554444 35899999975 33455566555    344555566666      56666443      


Q ss_pred             -CCCeEEEEEeeCCCceEEEeecCCceEEEEEC--CCCCcEEEEEec---CCEEEEEeCCCC-CCCcceE-----EeecC
Q psy17342        290 -YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWS--PINPALFATVEV---AGRVDLWNLNLD-TEVPATS-----AIVEG  357 (401)
Q Consensus       290 -~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~--~~~~~~l~~~~~---d~~i~iwd~~~~-~~~~~~~-----~~~~~  357 (401)
                       -.|.+.+|+.+.+ ..+.+.+|......+...  +....+++-+..   .+.++|-++... ...+.+.     ...+.
T Consensus       176 ~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~  254 (1630)
T 1xi4_A          176 RVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP  254 (1630)
T ss_pred             cccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCc
Confidence             2578899988643 345566665544433332  222224443332   268999998553 1111111     11111


Q ss_pred             ---CCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        358 ---APALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       358 ---~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                         ..-..++..|+....+..-+.-|.|++||+.++.
T Consensus       255 ~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~  291 (1630)
T 1xi4_A          255 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT  291 (1630)
T ss_pred             ccccCcceEEEeccccCEEEEEecCceEEEEecccch
Confidence               2334578888888888899999999999999984

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.43  E-value=0.71  Score=44.35  Aligned_cols=290  Identities=8%  Similarity=0.052  Sum_probs=148.6

Q ss_pred             ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEE
Q psy17342         67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLW  146 (401)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw  146 (401)
                      .|.++...+++..|..++           ++-+..++..+++....... ....|.++...+++  .|..|+.+ -+.++
T Consensus       192 ~i~~i~~d~~~~~lWigt-----------~~Gl~~~~~~~~~~~~~~~l-~~~~i~~i~~d~~g--~lWigT~~-Gl~~~  256 (758)
T 3ott_A          192 FVNSLLEDTTRQCVWIGT-----------EGYLFQYFPSTGQIKQTEAF-HNNSIKSLALDGNG--DLLAGTDN-GLYVY  256 (758)
T ss_dssp             CEEEEEEETTTTEEEEEE-----------EEEEEEEETTTTEEEEEEEE-EEEEEEEEEECTTC--CEEEEETT-EEEEE
T ss_pred             eeEEEEEECCCCEEEEEE-----------CCCCeEEcCCCCeEEeccCC-CCCeEEEEEEcCCC--CEEEEeCC-ceeEE
Confidence            478887777776666666           35678888775432221111 23457777776655  34445544 57888


Q ss_pred             ECCCCCCCceeeccc-cccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEE
Q psy17342        147 DTRVQKKTPVHRTPL-SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL  225 (401)
Q Consensus       147 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (401)
                      +..+........... ...-....|.++..  ..++. |-.|+..| +.++....   ..................|.++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~--D~~g~-lWiGT~~G-l~~~~~~~---~~~~~~~~~~~~~~~~~~v~~i  329 (758)
T 3ott_A          257 HNDTTPLQHIIHDSRNIQSLTNNIIWNIFA--DQEHN-IWLGTDYG-ISLSRYNS---ALQFIPISQITGTGDGNQFYSL  329 (758)
T ss_dssp             CCTTSCCEEECCCTTCTTSCSCSCEEEEEE--CTTCC-EEEEESSS-EEEECCCC----CEEEEHHHHSCSCCCCBEEEE
T ss_pred             ecCCCcEEEEEcCCCCcCcCCcCeEEEEEE--cCCCC-EEEEeCCc-ccccccCC---ceeEEecccCCCCCCCceEEEE
Confidence            876654321111000 00123346888876  66665 44455556 54443221   1111111000001123457888


Q ss_pred             EeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecC-------CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEG-------HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       226 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      .-. .++ .|.+|+.+| +..++...........+..       ....|.++.-.+.      +.+ ..|. ++-+..||
T Consensus       330 ~~D-~~g-~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~------g~l-Wigt-~~GL~~~~  398 (758)
T 3ott_A          330 FRD-SKG-FYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKE------QQL-WIAT-DGSINRYD  398 (758)
T ss_dssp             EEC-TTC-CEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTT------SCE-EEEE-TTEEEEEE
T ss_pred             EEc-CCC-CEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCC------CCE-EEEe-CCcHhhcC
Confidence            766 444 455566665 5555544211111112210       1234777776654      444 3455 45688898


Q ss_pred             eeCCCceEEEe--e-----cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC--CCcceE---E-e--ec-CCCCeE
Q psy17342        299 IKENKPVHSFN--E-----FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT--EVPATS---A-I--VE-GAPALS  362 (401)
Q Consensus       299 ~~~~~~~~~~~--~-----~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~---~-~--~~-~~~~v~  362 (401)
                      ..+++... +.  .     ....|.++.-.+++.  |..|+..+-|.++|..+..  ....+.   . .  .+ ....|.
T Consensus       399 ~~~~~~~~-~~~~~~~~~~~~~~v~~i~~d~~g~--lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~  475 (758)
T 3ott_A          399 YATRQFIH-YNIVDNTGTYNTNWTYYIFEDTAGQ--LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFIN  475 (758)
T ss_dssp             TTTTEEEE-EEEECCC--CBSSSEEEEEECTTSE--EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEE
T ss_pred             cCCCcEEE-eecCCCcCCCCCceEEEEEEcCCCC--EEEEECCCceEEEccccccccCCcceecccccccccccccceee
Confidence            87654322 22  1     124588888888775  4456655568888854210  000110   0 0  00 123588


Q ss_pred             EEEecCCCcEEEEEecCCcEEEEEeccCcc
Q psy17342        363 RVTWTPNGTQLCVGDEKGAITMFDVGEVGI  392 (401)
Q Consensus       363 ~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~  392 (401)
                      ++...++|.+.+.++..+-|..+|..+++.
T Consensus       476 ~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~  505 (758)
T 3ott_A          476 QIIPDNEGNVWVLLYNNKGIDKINPRTREV  505 (758)
T ss_dssp             EEEECTTSCEEEEETTCSSEEEEETTTTEE
T ss_pred             eEEEcCCCCEEEEccCCCCcEEEeCCCCce
Confidence            899988898776333344488888876643

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.29  E-value=0.17  Score=43.43  Aligned_cols=60  Identities=13%  Similarity=0.084  Sum_probs=29.6

Q ss_pred             EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCC------cEEEEEeccCccceeeee
Q psy17342        336 RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG------AITMFDVGEVGIACLKFI  398 (401)
Q Consensus       336 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg------~v~iw~~~~~~~~~l~~~  398 (401)
                      .+.+||+.+.+-...-..+. ....-  .+...++++++.|+.++      .|.+++++++++..+..+
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~-~r~~~--~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~  351 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQ-GRAYG--VSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE  351 (357)
T ss_dssp             CCEEEECC---CEEEEECSS-CCBSS--EEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred             eEEEEecCCCceeeCCCCCC-Ccccc--eeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence            57789988765332211111 11111  22334788888888653      466678888865544433

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.28  E-value=0.31  Score=41.04  Aligned_cols=65  Identities=11%  Similarity=0.101  Sum_probs=32.8

Q ss_pred             CCCeEEEEcC------CceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC-----CeEEEEEe
Q psy17342        231 DVNNFVVGCE------DGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD-----WSVKLWNI  299 (401)
Q Consensus       231 ~~~~l~~~~~------d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~  299 (401)
                      ++.+++.|+.      -..+.+||....+-..+..+.........+.+  .      +.+++.|+.+     ..+.+||+
T Consensus       158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~------~~iyv~GG~~~~~~~~~~~~yd~  229 (318)
T 2woz_A          158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--K------GKIVIAGGVTEDGLSASVEAFDL  229 (318)
T ss_dssp             TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T------TEEEEEEEEETTEEEEEEEEEET
T ss_pred             CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--C------CEEEEEcCcCCCCccceEEEEEC
Confidence            4566677754      23488888875432222222111111112222  2      5777777653     35677887


Q ss_pred             eCCC
Q psy17342        300 KENK  303 (401)
Q Consensus       300 ~~~~  303 (401)
                      .+.+
T Consensus       230 ~~~~  233 (318)
T 2woz_A          230 KTNK  233 (318)
T ss_dssp             TTCC
T ss_pred             CCCe
Confidence            6643

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.26  E-value=0.1  Score=43.82  Aligned_cols=236  Identities=10%  Similarity=0.050  Sum_probs=106.6

Q ss_pred             CCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEec----C-----CeEEE
Q psy17342         75 TQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTY----S-----GQIVL  145 (401)
Q Consensus        75 ~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~----d-----g~v~i  145 (401)
                      -++..++.|++.      ...-..+.+||..+.+-...-.......-.+++..  +..+++.|+.    +     ..+.+
T Consensus        23 ~~~~i~v~GG~~------~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~   94 (308)
T 1zgk_A           23 VGRLIYTAGGYF------RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDC   94 (308)
T ss_dssp             CCCCEEEECCBS------SSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEE
T ss_pred             CCCEEEEEeCcC------CCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEE
Confidence            345566666631      11235688999876432211011111111122222  3366666665    2     35888


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC-----CcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND-----GRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      ||..+.+-......+    ........+.+    ++..++.|+.+     ..+.+||+.+.. -.....++.     ...
T Consensus        95 ~d~~~~~W~~~~~~p----~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~-----~r~  160 (308)
T 1zgk_A           95 YNPMTNQWSPCAPMS----VPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDE-WHLVAPMLT-----RRI  160 (308)
T ss_dssp             EETTTTEEEECCCCS----SCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTE-EEECCCCSS-----CCB
T ss_pred             ECCCCCeEeECCCCC----cCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCe-EeECCCCCc-----ccc
Confidence            888776532221111    11111122222    56667766643     357778876421 111111111     111


Q ss_pred             ceEEEEeccCCCCeEEEEcCC-----ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC----
Q psy17342        221 AVLSLAFPQNDVNNFVVGCED-----GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD----  291 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d----  291 (401)
                      ....+.+   ++.+++.|+.+     ..+.+||....+-..+..+.........+.+  .      +.+++.|+.+    
T Consensus       161 ~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~------~~iyv~GG~~~~~~  229 (308)
T 1zgk_A          161 GVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--H------NCIYAAGGYDGQDQ  229 (308)
T ss_dssp             SCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T------TEEEEECCBCSSSB
T ss_pred             ceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--C------CEEEEEeCCCCCCc
Confidence            1222222   45677777654     3578888765432222222111111112222  2      5777777764    


Q ss_pred             -CeEEEEEeeCCCceE--EEeecCCceEEEEECCCCCcEEEEEecC-----CEEEEEeCCCCC
Q psy17342        292 -WSVKLWNIKENKPVH--SFNEFRDYVMDVQWSPINPALFATVEVA-----GRVDLWNLNLDT  346 (401)
Q Consensus       292 -~~i~iwd~~~~~~~~--~~~~~~~~v~~v~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~  346 (401)
                       ..+.+||+.+.+-..  .+.........+.+  ++. +++.|+.+     ..+.+||+.+.+
T Consensus       230 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          230 LNSVERYDVETETWTFVAPMKHRRSALGITVH--QGR-IYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             cceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCE-EEEEcCcCCCcccceEEEEcCCCCE
Confidence             468888887643211  11111111122222  343 67777643     457778877643

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.02  E-value=0.4  Score=37.62  Aligned_cols=149  Identities=11%  Similarity=0.027  Sum_probs=83.3

Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCc--------eeeeecCccCCCCCCCcEEEEEeCC
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGP--------VVGLSSHRAQGHIDFSHLYLTSSYD  291 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~--------v~~i~~~~~~~~~~~~~~l~s~~~d  291 (401)
                      ..+..++|+ |++.+.++  .+|.++-.+.......   .+.+-...        ..++.|.|+      +.+.++  .|
T Consensus        41 ~~~~~laf~-P~G~LYaV--~~G~Ly~~~~~t~~~~---~W~~s~t~IG~~Gw~~F~a~~fD~~------G~LYav--~d  106 (236)
T 1tl2_A           41 SNFKFLFLS-PGGELYGV--LNDKIYKGTPPTHDND---NWMGRAKKIGNGGWNQFQFLFFDPN------GYLYAV--SK  106 (236)
T ss_dssp             TTCSEEEEC-TTSCEEEE--ETTEEEEESCCCSTTC---CHHHHCEEEECSCGGGCSEEEECTT------SCEEEE--ET
T ss_pred             ccceeEEEC-CCccEEEE--eCCeEEEECCCCCCcc---cccccccEecccccccceEEEECCC------CCEEEe--CC
Confidence            367799999 58886666  7788877775432211   11111122        367888888      677776  47


Q ss_pred             CeEEEEEeeCCCce------EEE-eecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCc---ceEEee-cCCCC
Q psy17342        292 WSVKLWNIKENKPV------HSF-NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVP---ATSAIV-EGAPA  360 (401)
Q Consensus       292 ~~i~iwd~~~~~~~------~~~-~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~-~~~~~  360 (401)
                      |.|.-++-.+...-      ..+ ..--..+..|.+.|+|. +.+ .. |+.++-....+.....   .....- .+-..
T Consensus       107 G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lya-v~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~  183 (236)
T 1tl2_A          107 DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYA-VH-GQQFYKALPPVSNQDNWLARATKIGQGGWDT  183 (236)
T ss_dssp             TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEE-EE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGG
T ss_pred             CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEE-Ee-CCcEEecCCCCCCCcccccccceeccCCcce
Confidence            98887775332111      111 11124679999999995 444 44 8886443332221110   111101 12233


Q ss_pred             eEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        361 LSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       361 v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      ...+.|.++|.+.++.  +|  ++|....
T Consensus       184 yr~l~f~~~G~l~~v~--~g--~~Y~~~~  208 (236)
T 1tl2_A          184 FKFLFFSSVGTLFGVQ--GG--KFYEDYP  208 (236)
T ss_dssp             EEEEEECTTSCEEEEE--TT--EEEEESC
T ss_pred             EEEEEECCCCcEEEEe--CC--eEEecCC
Confidence            4557799999877766  66  5555543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.02  E-value=0.62  Score=39.73  Aligned_cols=238  Identities=11%  Similarity=0.011  Sum_probs=116.1

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-----EecCCCeeEEEEeCC---CCceEEE-
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-----FFCQSPVLSCCFAKF---NPYLILG-  136 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~---~~~~l~~-  136 (401)
                      .....|+|.|+|. |+++..         ..|.|++++..+++......     .........|+++|+   +..+.++ 
T Consensus        32 ~~P~~ia~~pdG~-llVter---------~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y  101 (347)
T 3das_A           32 NSPWGLAPLPGGD-LLVSSR---------DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF  101 (347)
T ss_dssp             SSEEEEEECTTSC-EEEEET---------TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred             CCceEEEEcCCCc-EEEEEe---------cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence            4578999999996 555551         37999999876444321111     122457899999995   3233332 


Q ss_pred             -EecCCeEEEEECCCCC-----C---CceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-------------CCcEE
Q psy17342        137 -GTYSGQIVLWDTRVQK-----K---TPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-------------DGRLC  194 (401)
Q Consensus       137 -g~~dg~v~iw~~~~~~-----~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~  194 (401)
                       ...++.|.-|.+....     .   ..+....-.-..|  ....|.|  .+++.+.++.+.             .|.|.
T Consensus       102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~f--gpDG~Lyvt~Gd~~~~~~~qd~~~~~G~Il  177 (347)
T 3das_A          102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAF--GPDKMLYAGTGESGDTGLSQDRKSLGGKIL  177 (347)
T ss_dssp             ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEE--CTTSCEEEECBCTTCGGGTTCTTCSTTCEE
T ss_pred             ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccC--CCCCCEEEEECCCCCCccccCCCCCCCEEE
Confidence             1234556666665421     1   0111100001233  3456888  889987777543             24444


Q ss_pred             EeeccCCC---CCccccccccccccCCccceEEEEeccCCCCeEEEEc-CCc--eEEEEeCCCC--------------CC
Q psy17342        195 SWSLEMLS---SPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-EDG--NVYSACRHGN--------------KA  254 (401)
Q Consensus       195 ~wd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~--~i~~~~~~~~--------------~~  254 (401)
                      -.+....-   .+....++.   ..++ .....++|+ +++.++++-. .++  .|.....-.+              ..
T Consensus       178 Ri~~dG~ip~~nPf~~~~i~---a~G~-RNp~Gla~d-p~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~  252 (347)
T 3das_A          178 RMTPDGEPAPGNPFPGSPVY---SYGH-RNVQGLAWD-DKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFH  252 (347)
T ss_dssp             EECTTSSBCTTCSSTTCCEE---EBCC-SBCCEEEEC-TTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCC
T ss_pred             EEeCCCCccCCCCCCCCeEE---eeCC-CCcceEEEC-CCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCcccc
Confidence            44443210   000000000   1122 235578888 4665544432 222  2322211000              00


Q ss_pred             CceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc----eEEEeecCCceEEEEECCCCCcEEEE
Q psy17342        255 GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP----VHSFNEFRDYVMDVQWSPINPALFAT  330 (401)
Q Consensus       255 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~v~~v~~~~~~~~~l~~  330 (401)
                      .++..+..+......++|..       +.+++..-..+.|....+.....    ...+.+....+..|+..|+|. ++++
T Consensus       253 ~P~~~~~~~~~ap~G~~~~~-------g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~-lyv~  324 (347)
T 3das_A          253 DPVAQWSTDEASPSGIAYAE-------GSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDK-LWLV  324 (347)
T ss_dssp             CCSEEECTTTCCEEEEEEET-------TEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTE-EEEE
T ss_pred             CCcEecCCCCCCCcceEEEc-------CceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCc-EEEE
Confidence            11222222222344556553       46666666566776667765432    222333345788899999886 4443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.88  E-value=0.71  Score=39.34  Aligned_cols=244  Identities=14%  Similarity=0.084  Sum_probs=124.8

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCC----ceEEEEEe--CCC
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQN----AHNLISIS--NDG  191 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~~--~dg  191 (401)
                      -.....|+|.|++ .++++--..|.|++++...+........+............|++  +|+    +...++-+  .++
T Consensus        31 L~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~--~Pdf~~~g~lYv~yt~~~~~  107 (347)
T 3das_A           31 LNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIAL--SPDYASDHMVYAYFTSASDN  107 (347)
T ss_dssp             CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEE--CTTHHHHCEEEEEEECSSSE
T ss_pred             CCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEe--ccccccCCEEEEEEecCCCC
Confidence            4567899999987 56666533899999886554432221111111233456789999  774    43334322  345


Q ss_pred             cEEEeeccCCC----C---CccccccccccccCCccceEEEEeccCCCCeEEEEc-------------CCceEEEEeCCC
Q psy17342        192 RLCSWSLEMLS----S---PQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-------------EDGNVYSACRHG  251 (401)
Q Consensus       192 ~i~~wd~~~~~----~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------------~d~~i~~~~~~~  251 (401)
                      .|.-|.+....    .   ....+.-..   .........|.|. +++.++++.+             ..|.|.-++..+
T Consensus       108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p---~~~~H~g~~l~fg-pDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG  183 (347)
T 3das_A          108 RIVRMLYDEKKPSGEQLGAPDTVFRGIP---KGVIHNGGRIAFG-PDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG  183 (347)
T ss_dssp             EEEEEEBCTTSCTTCCBCCCEEEEEEEC---CCSSCCCCCEEEC-TTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred             EEEEEEeCCCCcccccCCCcEEEEEcCC---CCCCccCccccCC-CCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence            56666554311    1   111111000   1122234578898 7877666543             235666666553


Q ss_pred             CCC------CceeeecCCCCceeeeecCccCCCCCCCcEEEEEe-CCCeEEEEEeeCC------------------CceE
Q psy17342        252 NKA------GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS-YDWSVKLWNIKEN------------------KPVH  306 (401)
Q Consensus       252 ~~~------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~------------------~~~~  306 (401)
                      ...      ....--.+|.. ...++|+|.      +.++++-. .|+.=.|--+..+                  .++.
T Consensus       184 ~ip~~nPf~~~~i~a~G~RN-p~Gla~dp~------G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~  256 (347)
T 3das_A          184 EPAPGNPFPGSPVYSYGHRN-VQGLAWDDK------QRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVA  256 (347)
T ss_dssp             SBCTTCSSTTCCEEEBCCSB-CCEEEECTT------CCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSE
T ss_pred             CccCCCCCCCCeEEeeCCCC-cceEEECCC------CCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcE
Confidence            210      00111124544 357889886      56555432 2332233223222                  1233


Q ss_pred             EEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEee-cCCCCeEEEEecCCCcEEEEEe
Q psy17342        307 SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIV-EGAPALSRVTWTPNGTQLCVGD  377 (401)
Q Consensus       307 ~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~  377 (401)
                      .+..+......++|.. +. ++...-..+.|....+............. .....+..++..|||.++++-+
T Consensus       257 ~~~~~~~ap~G~~~~~-g~-~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          257 QWSTDEASPSGIAYAE-GS-VWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EECTTTCCEEEEEEET-TE-EEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             ecCCCCCCCcceEEEc-Cc-eeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            3333223566777774 43 56655555666666665443221112112 2235789999999998766543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.77  E-value=0.29  Score=38.37  Aligned_cols=139  Identities=12%  Similarity=0.010  Sum_probs=75.2

Q ss_pred             CCCeEEEEcCCceEEEEeCCCCCCCce---eeecCC--CCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc-
Q psy17342        231 DVNNFVVGCEDGNVYSACRHGNKAGNV---ECYEGH--EGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP-  304 (401)
Q Consensus       231 ~~~~l~~~~~d~~i~~~~~~~~~~~~~---~~~~~~--~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-  304 (401)
                      .+.+|++..+| .++.=..........   .+..+.  =..+..++|+|+      +.+.+.  .+|.+.-.+..+... 
T Consensus         3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~------G~LYaV--~~G~Ly~~~~~t~~~~   73 (236)
T 1tl2_A            3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPG------GELYGV--LNDKIYKGTPPTHDND   73 (236)
T ss_dssp             CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTT------SCEEEE--ETTEEEEESCCCSTTC
T ss_pred             cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCC------ccEEEE--eCCeEEEECCCCCCcc
Confidence            34556666666 666544332221100   011122  246789999996      677776  577766666544221 


Q ss_pred             -----eEEEee-cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcce----EEeecCCCCeEEEEecCCCcEEE
Q psy17342        305 -----VHSFNE-FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPAT----SAIVEGAPALSRVTWTPNGTQLC  374 (401)
Q Consensus       305 -----~~~~~~-~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~v~~~~~s~~g~~l~  374 (401)
                           -..+-. --..-.++.|.|+|. +.++  .||.|+-++-.+......+    ..-...=..+..+.|.|+|.+.+
T Consensus        74 ~W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lya  150 (236)
T 1tl2_A           74 NWMGRAKKIGNGGWNQFQFLFFDPNGY-LYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYA  150 (236)
T ss_dssp             CHHHHCEEEECSCGGGCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEE
T ss_pred             cccccccEecccccccceEEEECCCCC-EEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEE
Confidence                 111110 011136899999996 5555  5798887775332221111    00011124678999999998777


Q ss_pred             EEecCCcEE
Q psy17342        375 VGDEKGAIT  383 (401)
Q Consensus       375 ~~~~dg~v~  383 (401)
                      +.  |+.++
T Consensus       151 v~--dg~ly  157 (236)
T 1tl2_A          151 VH--GQQFY  157 (236)
T ss_dssp             EE--TTEEE
T ss_pred             Ee--CCcEE
Confidence            66  77654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.18  Score=42.75  Aligned_cols=107  Identities=8%  Similarity=-0.046  Sum_probs=59.3

Q ss_pred             CcEEEEEeCCCeEEEEEeeCCCceEEEeecC--Cce-----EEEEEC-----CCCCcEEEEEecCCEEEEEeCCCCCCCc
Q psy17342        282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEFR--DYV-----MDVQWS-----PINPALFATVEVAGRVDLWNLNLDTEVP  349 (401)
Q Consensus       282 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~v-----~~v~~~-----~~~~~~l~~~~~d~~i~iwd~~~~~~~~  349 (401)
                      +..+++|+.++++...|+++|+.+.++....  +.+     .+....     ..+. .++.+..+..+.+.+ ++++ ..
T Consensus       111 ~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~-~v~ig~~~y~v~~~~-~sG~-~W  187 (339)
T 2be1_A          111 DEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN-MIVIGKTIFELGIHS-YDGA-SY  187 (339)
T ss_dssp             CEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC-EEEEEEEEEECEECC-TTSC-CC
T ss_pred             CCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC-eEEEecceEEEEEEC-CCCC-eE
Confidence            5788899999999999999999999886421  100     011110     1123 566677777787777 4443 33


Q ss_pred             ceEEeecCCCCeE-----EEEecCCCcEEEEEecCCcEEEEEeccCcc
Q psy17342        350 ATSAIVEGAPALS-----RVTWTPNGTQLCVGDEKGAITMFDVGEVGI  392 (401)
Q Consensus       350 ~~~~~~~~~~~v~-----~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~  392 (401)
                      ......-....+.     .-..+.|+.+ +.++.||.|.-+|..++..
T Consensus       188 ~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~  234 (339)
T 2be1_A          188 NVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIA  234 (339)
T ss_dssp             CCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCE
T ss_pred             EEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcE
Confidence            3221110000000     0011234555 4477788888888877753

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.44  E-value=1.8  Score=41.05  Aligned_cols=200  Identities=9%  Similarity=0.022  Sum_probs=93.7

Q ss_pred             CCceEEEEecC----CeEEEEECCCCCCCcee-eccc-cccCCCCcEEEEEEeecC-CceEEEEEeCCC------cEEEe
Q psy17342        130 NPYLILGGTYS----GQIVLWDTRVQKKTPVH-RTPL-SVMAHTHPVFCMSVIGTQ-NAHNLISISNDG------RLCSW  196 (401)
Q Consensus       130 ~~~~l~~g~~d----g~v~iw~~~~~~~~~~~-~~~~-~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg------~i~~w  196 (401)
                      +..+++.|+.+    ..+.+||..+..-.... ..+. ........ .+++.  .. ++..++.|+.++      .+.+|
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~-hs~~~--~~~~~~lyv~GG~~~~~~~~~dv~~y  473 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMC-HTFTT--ISRNNQLLLIGGRKAPHQGLSDNWIF  473 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBS-CEEEE--ETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccc-eEEEE--EccCCEEEEEcCCCCCCCccccEEEE
Confidence            33566677643    45888888776543222 1000 00111111 22232  23 667777776543      46777


Q ss_pred             eccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCc--eEEEEeCCCCCCCceee---ecCCCCceeeee
Q psy17342        197 SLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG--NVYSACRHGNKAGNVEC---YEGHEGPVVGLS  271 (401)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~~~~~~~~~~~~~~~---~~~~~~~v~~i~  271 (401)
                      |..+.. -.....++.     ....-.++.+  .++.+++.|+.++  .+.+||.....-..+..   +........++.
T Consensus       474 d~~t~~-W~~~~~~p~-----~R~~h~~~~~--~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v  545 (695)
T 2zwa_A          474 DMKTRE-WSMIKSLSH-----TRFRHSACSL--PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLE  545 (695)
T ss_dssp             ETTTTE-EEECCCCSB-----CCBSCEEEEC--TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEE
T ss_pred             eCCCCc-EEECCCCCC-----CcccceEEEE--cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEE
Confidence            776411 111111111     1112222222  2677888887655  68889887543222211   111111112233


Q ss_pred             cCccCCCCCCCcEEEEEeC--C-----CeEEEEEeeCCCc-----eEEEeec---CCceEEEEECCCCCcEEEEEecC--
Q psy17342        272 SHRAQGHIDFSHLYLTSSY--D-----WSVKLWNIKENKP-----VHSFNEF---RDYVMDVQWSPINPALFATVEVA--  334 (401)
Q Consensus       272 ~~~~~~~~~~~~~l~s~~~--d-----~~i~iwd~~~~~~-----~~~~~~~---~~~v~~v~~~~~~~~~l~~~~~d--  334 (401)
                      +....     +.+++.|+.  +     ..+.+||+.+.+-     -..+...   ...-.+++...++. +++.|+.+  
T Consensus       546 ~~~~~-----~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~-iyv~GG~~~~  619 (695)
T 2zwa_A          546 FDPVS-----KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK-LLIVGGTSPS  619 (695)
T ss_dssp             EETTT-----TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE-EEEECCBCSS
T ss_pred             EeCCC-----CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE-EEEECCccCC
Confidence            33321     357777765  2     4588999987761     1122111   11111222333244 77777743  


Q ss_pred             ------CEEEEEeCCCCC
Q psy17342        335 ------GRVDLWNLNLDT  346 (401)
Q Consensus       335 ------~~i~iwd~~~~~  346 (401)
                            ..+.+||+.+.+
T Consensus       620 ~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          620 GLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             CCCCTTTSEEEEETTTTE
T ss_pred             CCCCCCCeEEEEECCCCe
Confidence                  468899988754

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=94.09  E-value=4.5  Score=39.03  Aligned_cols=163  Identities=10%  Similarity=0.041  Sum_probs=76.4

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccC----CCCcEEEEEEeecCC-ceEEEEEeCCCc
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMA----HTHPVFCMSVIGTQN-AHNLISISNDGR  192 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~-~~~l~s~~~dg~  192 (401)
                      .+.|.+|+++|.++..++++...+.|...+=....-.++    .....    ....|.+|++  .|. ...++.+..+..
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~----~~~~~~~~~~~~~i~~ia~--dp~~~~~i~~~~g~~~   87 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPL----NDFIEAQDMNIMGTESIAL--DPNNPDRLYLAQGRYV   87 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEES----CTTCCGGGGGGCSEEEEEE--ETTEEEEEEEEECSCT
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeEC----ccCCCcccccCCceeEEEE--CCCCCCEEEEEeCccC
Confidence            468999999998777888887777665444222111111    00000    2346899998  553 334444432211


Q ss_pred             ----EEEeeccCCCCCcccccccccc--ccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec---CC
Q psy17342        193 ----LCSWSLEMLSSPQETRDLQYNN--KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE---GH  263 (401)
Q Consensus       193 ----i~~wd~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~---~~  263 (401)
                          -.||.-...+..-.........  .......+..++++|.+.+.++++...+.|+.=+-.+..-+.+....   ..
T Consensus        88 ~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~~~  167 (789)
T 1sqj_A           88 GDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTN  167 (789)
T ss_dssp             TSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCCST
T ss_pred             CCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCccccCC
Confidence                3344333222111111110000  00011135567888666677777775555543221112211111111   11


Q ss_pred             CCceeeeecCccCCCCCCCcEEEEEeCC
Q psy17342        264 EGPVVGLSSHRAQGHIDFSHLYLTSSYD  291 (401)
Q Consensus       264 ~~~v~~i~~~~~~~~~~~~~~l~s~~~d  291 (401)
                      ...+..+.++|..     +..++.+..+
T Consensus       168 ~~~~~~i~~~p~~-----~~~~~~~~~~  190 (789)
T 1sqj_A          168 GIGYTSVIFDPER-----NGTIYASATA  190 (789)
T ss_dssp             TTCEEEEEECTTS-----TTCEEEEESS
T ss_pred             CCCeEEEEECCCC-----CCEEEEEEcC
Confidence            2457788888864     4455555544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.68  E-value=2  Score=40.71  Aligned_cols=155  Identities=8%  Similarity=0.059  Sum_probs=79.7

Q ss_pred             CCCeEEEEcCCc------eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC--eEEEEEeeCC
Q psy17342        231 DVNNFVVGCEDG------NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW--SVKLWNIKEN  302 (401)
Q Consensus       231 ~~~~l~~~~~d~------~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~  302 (401)
                      ++..++.|+.++      .+.+||....+-..+..+......-..+.+. .      +.+++.|+.++  .+.+||..+.
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~-~------~~iyv~GG~~~~~~v~~yd~~t~  523 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP-D------GNVLILGGVTEGPAMLLYNVTEE  523 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT-T------SCEEEECCBCSSCSEEEEETTTT
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc-C------CEEEEECCCCCCCCEEEEECCCC
Confidence            667777776543      4778887654322222221111111122222 2      67888887654  6888888764


Q ss_pred             CceEE-----EeecCCceEEEEECCCCCcEEEEEec--C-----CEEEEEeCCCCCC-----CcceEE-eecCCCCeEEE
Q psy17342        303 KPVHS-----FNEFRDYVMDVQWSPINPALFATVEV--A-----GRVDLWNLNLDTE-----VPATSA-IVEGAPALSRV  364 (401)
Q Consensus       303 ~~~~~-----~~~~~~~v~~v~~~~~~~~~l~~~~~--d-----~~i~iwd~~~~~~-----~~~~~~-~~~~~~~v~~~  364 (401)
                      +-...     +........++.+......+++.|+.  +     +.+.+||+.+...     -..+.. +....... ++
T Consensus       524 ~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~  602 (695)
T 2zwa_A          524 IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QI  602 (695)
T ss_dssp             EEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EE
T ss_pred             ceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eE
Confidence            31111     11111122335555552347777775  2     4689999988762     011111 00111112 22


Q ss_pred             EecCCCcEEEEEecC--------CcEEEEEeccCccc
Q psy17342        365 TWTPNGTQLCVGDEK--------GAITMFDVGEVGIA  393 (401)
Q Consensus       365 ~~s~~g~~l~~~~~d--------g~v~iw~~~~~~~~  393 (401)
                      ....++++++.|+.+        ..|.+||+.+....
T Consensus       603 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          603 KYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             EEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             EEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            233337888888743        45999999887654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.08  E-value=5  Score=36.44  Aligned_cols=148  Identities=9%  Similarity=0.043  Sum_probs=86.5

Q ss_pred             eEEEEeCCCCC--CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC-CCeEEEEEeeC------CCc-------eE
Q psy17342        243 NVYSACRHGNK--AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DWSVKLWNIKE------NKP-------VH  306 (401)
Q Consensus       243 ~i~~~~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~------~~~-------~~  306 (401)
                      .+.+.|.+...  ...+..+-.-......+.++|+      +++++.++. +.++.++|+++      .+.       +.
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPD------Gkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a  372 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSD------GKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG  372 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTT------SCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCC------CCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe
Confidence            35666665311  1112222223344567888998      677666654 88999999874      111       22


Q ss_pred             EEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC------CCCcceEEeecCCCCeEEEEe------cCCCcEEE
Q psy17342        307 SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD------TEVPATSAIVEGAPALSRVTW------TPNGTQLC  374 (401)
Q Consensus       307 ~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~------s~~g~~l~  374 (401)
                      +.+. .-.....+|.++| +.+.+.--|.+|.-|++...      +....+.....-+-.+-.+.-      .++|++|+
T Consensus       373 e~e~-GlGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv  450 (638)
T 3sbq_A          373 EPEL-GLGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLV  450 (638)
T ss_dssp             CCBC-CSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEE
T ss_pred             eccC-CCcccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEE
Confidence            2222 3346779999999 46777778999999998642      222222222222223333333      57899998


Q ss_pred             EEe---cCCc----------EEEEEeccCccceeeee
Q psy17342        375 VGD---EKGA----------ITMFDVGEVGIACLKFI  398 (401)
Q Consensus       375 ~~~---~dg~----------v~iw~~~~~~~~~l~~~  398 (401)
                      +..   .|..          -++.|+...+++.+.-.
T Consensus       451 ~lnK~skdrfl~vGpl~pen~QlidIsGdkM~lv~D~  487 (638)
T 3sbq_A          451 ALSKFSKDRFLPVGPLHPENDQLIDISGDEMKLVHDG  487 (638)
T ss_dssp             EEESCCTTSSCCCSSSCCEEEEEEECSSSSCEEEEEE
T ss_pred             EecccccccCcCCCCCCCCcceeEecCCCceEEEecC
Confidence            874   3443          37888877665555443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.47  E-value=0.52  Score=42.59  Aligned_cols=98  Identities=6%  Similarity=-0.013  Sum_probs=66.5

Q ss_pred             eEEEEEeeC----CCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC------CC---CcceEEeecCCC
Q psy17342        293 SVKLWNIKE----NKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD------TE---VPATSAIVEGAP  359 (401)
Q Consensus       293 ~i~iwd~~~----~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~---~~~~~~~~~~~~  359 (401)
                      .|.+.|.+.    +..+..+-.-......+..+|+|+++++++-.+.++.++|++..      +.   ...+.....-.-
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            467777765    33333332334556789999999988888888999999998741      11   111111122244


Q ss_pred             CeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        360 ALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       360 ~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      .....+|.++|....+-.-|..|.-|++...
T Consensus       379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             cccEEEECCCCceEeeeeecceEEEEeccHH
Confidence            5678999999966666778999999999763

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.34  E-value=0.29  Score=41.53  Aligned_cols=108  Identities=6%  Similarity=0.051  Sum_probs=65.7

Q ss_pred             CcEEEEEeCCCeEEEEEeeCCCceEEEeec-CCceEEEEE--CCCCCcEEEEE-ecCCEEEEEeCCCCCCCcceEEeec-
Q psy17342        282 SHLYLTSSYDWSVKLWNIKENKPVHSFNEF-RDYVMDVQW--SPINPALFATV-EVAGRVDLWNLNLDTEVPATSAIVE-  356 (401)
Q Consensus       282 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~v~~--~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~-  356 (401)
                      +.+++.++.||.|.-.|..+|+.+.+++.. ..++....-  .+.+...++.. +.||.|..++..++...  .....+ 
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~--~~~~~~~   87 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK--LPLSIRQ   87 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE--EEEEHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE--eeecccc
Confidence            468888999999999999999998888763 122222110  01122244443 57999999998876432  222111 


Q ss_pred             --CCCCeEE---EEe-----cCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        357 --GAPALSR---VTW-----TPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       357 --~~~~v~~---~~~-----s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                        ...++..   ...     +..+..+++|+.+|.+...|+.+|+
T Consensus        88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~  132 (339)
T 2be1_A           88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE  132 (339)
T ss_dssp             HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred             ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence              1112211   000     0145678889999999999998884

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.84  E-value=6  Score=32.53  Aligned_cols=224  Identities=16%  Similarity=0.121  Sum_probs=118.5

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS  197 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd  197 (401)
                      ...|..++....  ..++. . ||.|..|-..........   .   .....|..++.  . ....++. . ||.|..|-
T Consensus        23 ~~~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg~p---~---~~~~~i~~ia~--G-~~hs~~l-~-~G~v~~wG   87 (282)
T 3qhy_B           23 QSGVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTMP---A---ATQSGVDAIAA--G-NYHSLAL-K-DGEVIAWG   87 (282)
T ss_dssp             SSSCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTSCC---G---GGGSCCCEEEE--C-SSEEEEE-E-TTEEEEEE
T ss_pred             cCCCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCCCC---c---cCCCCEEEEEe--C-CCEEEEE-E-CCEEEEee
Confidence            346778877432  23333 5 899999987654432221   1   11235677765  2 3333444 4 89999998


Q ss_pred             ccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCC
Q psy17342        198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQG  277 (401)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  277 (401)
                      .....+......        ....|..++.. .  ...+.-+ +|.|+.|=......  +-........|..++.-..  
T Consensus        88 ~n~~Gqlg~P~~--------~~~~v~~ia~G-~--~hs~al~-~G~v~~wG~n~~gq--lg~~~~~~~~i~~i~~G~~--  151 (282)
T 3qhy_B           88 GNEDGQTTVPAE--------ARSGVDAIAAG-A--WASYALK-DGKVIAWGDDSDGQ--TTVPAEAQSGVTALDGGVY--  151 (282)
T ss_dssp             CCTTSTTCCCGG--------GSSSEEEEEEE-T--TEEEEEE-TTEEEEEECCTTST--TSCCGGGGSSEEEEEECSS--
T ss_pred             CCCCCCCCCCcc--------cCCCeEEEECc-C--CEEEEEe-CCeEEEecCCCCCc--CCCCccCCCCeEEEEcccC--
Confidence            765333221111        12367777765 2  3333334 99999996543211  1111112345666665543  


Q ss_pred             CCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecC
Q psy17342        278 HIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG  357 (401)
Q Consensus       278 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  357 (401)
                           ..++ -. ||.|..|-....-.+..-..-...|..++.....  .++.  .||.|..|=.....++...   ...
T Consensus       152 -----~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h--s~al--~~G~v~~wG~n~~gqlg~p---~~~  217 (282)
T 3qhy_B          152 -----TALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH--SLAL--KDGKVIAWGDNRYKQTTVP---TEA  217 (282)
T ss_dssp             -----EEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEE--ETTEEEEEECCTTSTTCCC---GGG
T ss_pred             -----EEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE--EEEE--ECCeEEEEECCCCCCCCCC---ccc
Confidence                 2233 33 7999999765422211111113467777766553  3444  5999999977654433221   112


Q ss_pred             CCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        358 APALSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       358 ~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      ...|..++-..... ++..  ||.|+.|=-..
T Consensus       218 ~~~v~~i~~G~~h~-~al~--~g~v~~wG~n~  246 (282)
T 3qhy_B          218 LSGVSAIASGEWYS-LALK--NGKVIAWGSSR  246 (282)
T ss_dssp             GSSCCEEEECSSCE-EEEE--TTEEEEESTTC
T ss_pred             CCCceEEEcCCCEE-EEEE--CCEEEEecCCC
Confidence            23466666544332 3333  88888886544

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=90.51  E-value=6.7  Score=32.60  Aligned_cols=139  Identities=7%  Similarity=0.012  Sum_probs=71.8

Q ss_pred             EeccCCCCeEEEEc----CCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC-CCeEEEEEee
Q psy17342        226 AFPQNDVNNFVVGC----EDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DWSVKLWNIK  300 (401)
Q Consensus       226 ~~~~~~~~~l~~~~----~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~  300 (401)
                      .++ ++++.|+...    .+..|+..++.+..   ...+..+..    ..++|.      ++.|.-.+. ...|..-++.
T Consensus       110 ~~s-~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~---~~~lt~~~~----~~~~~~------g~~iy~t~~g~~~Iy~~~l~  175 (302)
T 3s25_A          110 YAS-LIGNYIYYLHYDTQTATSLYRIRIDGEE---KKKIKNHYL----FTCNTS------DRYFYYNNPKNGQLYRYDTA  175 (302)
T ss_dssp             EEE-EETTEEEEEEESSSSCEEEEEEETTSCC---CEEEESSCC----CCSEEE------TTEEEEECTTTCCEEEEETT
T ss_pred             EEE-EeCCEEEEEeecCCCCceEEEEECCCCC---eEEEeCCCc----eEeeEE------CCEEEEEeCCCceEEEEECC
Confidence            455 4667776654    45567777776443   223333322    455666      455554443 5677777765


Q ss_pred             CCCceEEEeecCCceEEEEECCCCCcEEEEEecC-CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEec-
Q psy17342        301 ENKPVHSFNEFRDYVMDVQWSPINPALFATVEVA-GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDE-  378 (401)
Q Consensus       301 ~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-  378 (401)
                      .+... .+..  +... ..++|++..++.+-..+ ..|..-++...... .+    . ...+  ..|+|++.+|+-+.. 
T Consensus       176 g~~~~-~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~-~L----t-~~~~--~~~~~~g~~Iy~~~~~  243 (302)
T 3s25_A          176 SQSEA-LFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV-VL----T-EANI--EHYNVYGSLIFYQRGG  243 (302)
T ss_dssp             TTEEE-EEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCE-EC----S-CSCE--EEEEEETTEEEEEECS
T ss_pred             CCCEE-EEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeE-EE----e-CCCc--ceEEECCCEEEEEECC
Confidence            54433 3322  2222 33568888555554333 35666666654322 21    1 1223  347778887765532 


Q ss_pred             -CCcEEEEEeccC
Q psy17342        379 -KGAITMFDVGEV  390 (401)
Q Consensus       379 -dg~v~iw~~~~~  390 (401)
                       .+.|..-++...
T Consensus       244 ~~~~i~~~~~DG~  256 (302)
T 3s25_A          244 DNPALCVVKNDGT  256 (302)
T ss_dssp             SSCEEEEEETTSC
T ss_pred             CCcEEEEEECCCC
Confidence             344555555443

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=89.62  E-value=9.5  Score=32.99  Aligned_cols=113  Identities=11%  Similarity=0.073  Sum_probs=57.9

Q ss_pred             ceEEEEeccCC-CCeEEEEcCCceEEEEeCCCCCCCceeeec----------------CCCCceeeeecCccCCCCCCCc
Q psy17342        221 AVLSLAFPQND-VNNFVVGCEDGNVYSACRHGNKAGNVECYE----------------GHEGPVVGLSSHRAQGHIDFSH  283 (401)
Q Consensus       221 ~v~~~~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~----------------~~~~~v~~i~~~~~~~~~~~~~  283 (401)
                      .|.++++.|.+ ...+.+++..+.|+..+-.+.+-..+....                .....+.+|.+.|..     ..
T Consensus       116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~-----~~  190 (394)
T 3b7f_A          116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRD-----PK  190 (394)
T ss_dssp             EEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTC-----TT
T ss_pred             ceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCC-----CC
Confidence            57889998555 677777777777766543333222221110                122357788888743     33


Q ss_pred             EEEEEeCCCeEEEEEeeCCCceEEEee-----c--------CCceEEEEECCCCCcEEEEEecCCEEEEE
Q psy17342        284 LYLTSSYDWSVKLWNIKENKPVHSFNE-----F--------RDYVMDVQWSPINPALFATVEVAGRVDLW  340 (401)
Q Consensus       284 ~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~--------~~~v~~v~~~~~~~~~l~~~~~d~~i~iw  340 (401)
                      .+..+..++.|...+ ..++.-..+..     +        ...+.++.++|.....+..+... .|...
T Consensus       191 ~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~-gl~~s  258 (394)
T 3b7f_A          191 HLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC-GIYRM  258 (394)
T ss_dssp             CEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT-EEEEE
T ss_pred             EEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC-eEEEe
Confidence            444444344443322 12332222211     0        12488999999743355555544 34443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=87.79  E-value=14  Score=32.75  Aligned_cols=114  Identities=11%  Similarity=0.023  Sum_probs=58.8

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCC-eEEEEECCCCCCCceeecccccc--CCCCcEEEEEEeecC----CceEEEEEeC-
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSG-QIVLWDTRVQKKTPVHRTPLSVM--AHTHPVFCMSVIGTQ----NAHNLISISN-  189 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg-~v~iw~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~----~~~~l~s~~~-  189 (401)
                      -.....|+|.|++ +++++- ..+ .|++++..++........+-.+.  ........|+|  +|    ++.+.++-+. 
T Consensus        26 l~~P~~~a~~pdG-~l~V~e-~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~--~Pdf~~~g~lYv~~s~~  101 (454)
T 1cru_A           26 LNKPHALLWGPDN-QIWLTE-RATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAF--HPDFKNNPYIYISGTFK  101 (454)
T ss_dssp             CSSEEEEEECTTS-CEEEEE-TTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEE--CTTTTTSCEEEEEEEEE
T ss_pred             CCCceEEEEcCCC-cEEEEE-cCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEE--CCCcCcCCEEEEEEecc
Confidence            3467799999988 566654 454 68888765443322211111011  13456789999  77    4444444432 


Q ss_pred             -----------CCcEEEeeccCCCC----CccccccccccccCCccceEEEEeccCCCCeEEEEc
Q psy17342        190 -----------DGRLCSWSLEMLSS----PQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC  239 (401)
Q Consensus       190 -----------dg~i~~wd~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  239 (401)
                                 ...|.-+++.....    ....+....   .........|+|. +++.++++.+
T Consensus       102 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p---~~~~H~~~~l~f~-pDG~Lyv~~G  162 (454)
T 1cru_A          102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP---SSKDHQSGRLVIG-PDQKIYYTIG  162 (454)
T ss_dssp             CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC---CCSSCCEEEEEEC-TTSCEEEEEC
T ss_pred             ccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCC---CCCCCCCCeEeEC-CCCeEEEEEC
Confidence                       23455555532110    111111000   1122357889999 7887666543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=86.77  E-value=17  Score=32.42  Aligned_cols=112  Identities=13%  Similarity=0.042  Sum_probs=61.8

Q ss_pred             cceEEEEecCCCC-CeEEEEeccCCCCCCCCCcEEEEEeCcCCCC-CceEEEe----------cCCCeeEEEEeCC---C
Q psy17342         66 RNVTYMDWSTQHP-ELLLASYHRNKEAPNEPDGVCLIWNTKFKKT-TPEFEFF----------CQSPVLSCCFAKF---N  130 (401)
Q Consensus        66 ~~v~~~~~~~~~~-~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~-~~~~~~~----------~~~~v~~~~~~~~---~  130 (401)
                      ..-..|+|.|+|. .|+++.          ..|.|++++...... .+...+.          .......|+|+|+   +
T Consensus        14 ~~P~~~a~~pdG~~rl~V~e----------r~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n   83 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILE----------KEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKN   83 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEE----------TTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHH
T ss_pred             CCceEEEECCCCCeEEEEEe----------CCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCC
Confidence            3478899999996 577777          689999997643211 1111111          1356889999995   2


Q ss_pred             CceEEEEec--C----------CeEEEEECCCCC--------CCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC
Q psy17342        131 PYLILGGTY--S----------GQIVLWDTRVQK--------KTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND  190 (401)
Q Consensus       131 ~~~l~~g~~--d----------g~v~iw~~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d  190 (401)
                      ..+.++-+.  +          ..|.-|.+....        ...+...+.....|  ....|.|  .|++.+.++.+..
T Consensus        84 ~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H--~g~~l~f--gpDG~LYv~~Gd~  159 (463)
T 2wg3_C           84 GKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKH--LGGQLLF--GPDGFLYIILGDG  159 (463)
T ss_dssp             CEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSS--CEEEEEE--CTTSCEEEEECCT
T ss_pred             CEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcc--cCCcEeE--CCCCcEEEEeCCC
Confidence            233333221  1          134446654321        01111111111234  4678888  8999877776654


Q ss_pred             C
Q psy17342        191 G  191 (401)
Q Consensus       191 g  191 (401)
                      +
T Consensus       160 ~  160 (463)
T 2wg3_C          160 M  160 (463)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=86.67  E-value=13  Score=30.94  Aligned_cols=250  Identities=6%  Similarity=0.024  Sum_probs=122.3

Q ss_pred             cCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecC-------------
Q psy17342         74 STQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYS-------------  140 (401)
Q Consensus        74 ~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d-------------  140 (401)
                      ++++..|......        .++.|...+.+ +.....+ ..  .  .+-.+++++..+..+...+             
T Consensus        22 ~~~g~~iy~~n~~--------d~~~ly~~~~d-g~~~~~l-~~--~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~   87 (302)
T 3s25_A           22 CESDGEVFFSNTN--------DNGRLYAMNID-GSNIHKL-SN--D--TAMYINADKNYVYYVRNNNQKITSQTFFSYDR   87 (302)
T ss_dssp             EEETTEEEEEEGG--------GTTEEEEEETT-SCSCEEE-EE--E--EEEEEEECSSEEEEEEECC------CCSSCCS
T ss_pred             EEeCCEEEEEeCC--------CCceEEEEcCC-CCCCEEc-cC--C--ceeeEEEcCCEEEEEECCCCcccccceeccCC
Confidence            3567777776621        24566666655 3323222 22  1  2345578775555555443             


Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEe--CCCcEEEeeccCCCCCccccccccccccCC
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS--NDGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      ..|+..+++..+...+         ......  .+  +++++.|+-..  .++.-.|+.+...+.....  +..     +
T Consensus        88 ~~Iy~i~~dg~~~~~l---------~~~~~~--~~--s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~--lt~-----~  147 (302)
T 3s25_A           88 NSLCRIKRNGHGSTVL---------DPDPCI--YA--SLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK--IKN-----H  147 (302)
T ss_dssp             EEEEEEETTSCCCEEE---------ECSCEE--EE--EEETTEEEEEEESSSSCEEEEEEETTSCCCEE--EES-----S
T ss_pred             CeEEEEeCCCCcceEe---------ecCCcc--EE--EEeCCEEEEEeecCCCCceEEEEECCCCCeEE--EeC-----C
Confidence            4577777776653221         112222  34  45777777665  4555555555432322221  111     1


Q ss_pred             ccceEEEEeccCCCCeEEEEcC-CceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCC--CeEE
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCE-DGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD--WSVK  295 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d--~~i~  295 (401)
                        .+  .+++ ++++.|+..+. ...|++.++.+...+.  .+.   +... ..+.|.      +.+|+-...+  ..|.
T Consensus       148 --~~--~~~~-~~g~~iy~t~~g~~~Iy~~~l~g~~~~~--l~~---~~~~-~~~~P~------g~~iy~t~~~~~~~I~  210 (302)
T 3s25_A          148 --YL--FTCN-TSDRYFYYNNPKNGQLYRYDTASQSEAL--FYD---CNCY-KPVVLD------DTNVYYMDVNRDNAIV  210 (302)
T ss_dssp             --CC--CCSE-EETTEEEEECTTTCCEEEEETTTTEEEE--EEC---SCEE-EEEEEE------TTEEEEEEGGGTTEEE
T ss_pred             --Cc--eEee-EECCEEEEEeCCCceEEEEECCCCCEEE--EeC---CCcc-ceeeec------CCEEEEEEcCCCcEEE
Confidence              11  3455 45666665554 6778888877543222  222   2222 234577      4565555433  3455


Q ss_pred             EEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEE-ecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEE
Q psy17342        296 LWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATV-EVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLC  374 (401)
Q Consensus       296 iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  374 (401)
                      .-++... ....+..  ..+  ..|+|++..++.+. ...+.|..-++..... ..+.  ..   .+.  .+++.+.+|+
T Consensus       211 ~~~ldG~-~~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r-~~l~--~~---~~~--~i~i~~d~Iy  277 (302)
T 3s25_A          211 HVNINNP-NPVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGF-KELA--KG---EFC--NINVTSQYVY  277 (302)
T ss_dssp             EECSSSC-CCEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCC-EEEE--ES---CEE--EEEECSSEEE
T ss_pred             EEECCCC-CeEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCcc-EEee--CC---ccc--eEEEeCCEEE
Confidence            5555433 3344432  233  33778887554432 2345677777764332 2322  11   233  3455666666


Q ss_pred             EEe-cCCcEEEEEe
Q psy17342        375 VGD-EKGAITMFDV  387 (401)
Q Consensus       375 ~~~-~dg~v~iw~~  387 (401)
                      -.. ..+.|..-++
T Consensus       278 ~td~~~~~i~~~~~  291 (302)
T 3s25_A          278 FTDFVSNKEYCTST  291 (302)
T ss_dssp             EEETTTCCEEEEES
T ss_pred             EEECCCCeEEEEEC
Confidence            554 3455554443

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=86.18  E-value=16  Score=31.58  Aligned_cols=157  Identities=11%  Similarity=0.094  Sum_probs=72.9

Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceee-ecC-C--------CCceeeeecCccCCCCCCCcEEEEEe
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVEC-YEG-H--------EGPVVGLSSHRAQGHIDFSHLYLTSS  289 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~-~~~-~--------~~~v~~i~~~~~~~~~~~~~~l~s~~  289 (401)
                      ..+.+|.+.|.+...++++..++.|+..+-.+.+-..+.. ... +        ...+.++.+.|..     ...+..+.
T Consensus       177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~-----~~~l~vg~  251 (394)
T 3b7f_A          177 PKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAA-----PDILYQQN  251 (394)
T ss_dssp             CEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSS-----TTEEEEEE
T ss_pred             CceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCC-----CCEEEEEc
Confidence            4678899985456667777666666554333222111100 000 0        1247888888864     45666666


Q ss_pred             CCCeEEEEEeeCCCceEEEee--cC---CceEEEEECCCCCcEEEEEec-----------CCEEEEEeCCCCCCCcc-eE
Q psy17342        290 YDWSVKLWNIKENKPVHSFNE--FR---DYVMDVQWSPINPALFATVEV-----------AGRVDLWNLNLDTEVPA-TS  352 (401)
Q Consensus       290 ~d~~i~iwd~~~~~~~~~~~~--~~---~~v~~v~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~-~~  352 (401)
                      ..+ |...+ ..++.-..+..  ..   ..+.+++++|..+..+..+..           ++...+|....+..... +.
T Consensus       252 ~~g-l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~  329 (394)
T 3b7f_A          252 HCG-IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD  329 (394)
T ss_dssp             TTE-EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC
T ss_pred             CCe-EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC
Confidence            444 43332 12222111111  11   345678888743223444321           23345665554322111 11


Q ss_pred             EeecCCC-----CeEEEEecCC-CcEEEEEecCCcEE
Q psy17342        353 AIVEGAP-----ALSRVTWTPN-GTQLCVGDEKGAIT  383 (401)
Q Consensus       353 ~~~~~~~-----~v~~~~~s~~-g~~l~~~~~dg~v~  383 (401)
                      ...+...     ....++++|. ...|+.++.++.|.
T Consensus       330 ~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~  366 (394)
T 3b7f_A          330 RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIW  366 (394)
T ss_dssp             BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred             CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence            0011111     1135778774 34566666555443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=84.12  E-value=22  Score=31.59  Aligned_cols=260  Identities=10%  Similarity=0.052  Sum_probs=123.2

Q ss_pred             CCeeEEEEeCCCC-ceEEEEecCCeEEEEECCCCC-CCceeecccccc-----CCCCcEEEEEEeecCC----ceEEEEE
Q psy17342        119 SPVLSCCFAKFNP-YLILGGTYSGQIVLWDTRVQK-KTPVHRTPLSVM-----AHTHPVFCMSVIGTQN----AHNLISI  187 (401)
Q Consensus       119 ~~v~~~~~~~~~~-~~l~~g~~dg~v~iw~~~~~~-~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~----~~~l~s~  187 (401)
                      .....|+|.|++. +++++ ...|.|++++..... .......+..+.     ........|++  +|+    +.+.++-
T Consensus        14 ~~P~~~a~~pdG~~rl~V~-er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~--~P~f~~n~~lYv~y   90 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFIL-EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAF--HPNYKKNGKLYVSY   90 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEE-ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEE--CTTHHHHCEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEE-eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEe--CCCCcCCCEEEEEE
Confidence            4567899999884 35554 578999999754321 111111111111     12456788998  765    3444433


Q ss_pred             eC--C----------CcEEEeeccCCC-------CCccccccccccccCCccceEEEEeccCCCCeEEEEcCC-------
Q psy17342        188 SN--D----------GRLCSWSLEMLS-------SPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED-------  241 (401)
Q Consensus       188 ~~--d----------g~i~~wd~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------  241 (401)
                      +.  +          ..|.-|.+....       .....+.+..   .........|+|. +|+.+.++.+..       
T Consensus        91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~---~~~~H~g~~l~fg-pDG~LYv~~Gd~~~~~~~~  166 (463)
T 2wg3_C           91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE---LHRKHLGGQLLFG-PDGFLYIILGDGMITLDDM  166 (463)
T ss_dssp             EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE---SSSSSCEEEEEEC-TTSCEEEEECCTTCCHHHH
T ss_pred             eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC---CCCcccCCcEeEC-CCCcEEEEeCCCCCCCCcc
Confidence            32  1          134445554211       1111122111   1123346789999 788776655432       


Q ss_pred             ----------ceEEEEeCCCCC------C------------CceeeecCCCCceeeeecCccCCCCCCCc-EEEEEeCCC
Q psy17342        242 ----------GNVYSACRHGNK------A------------GNVECYEGHEGPVVGLSSHRAQGHIDFSH-LYLTSSYDW  292 (401)
Q Consensus       242 ----------~~i~~~~~~~~~------~------------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~-~l~s~~~d~  292 (401)
                                |.|.-.+.....      .            ....--.+|..+ ..++|+|..+... +. ++..+...+
T Consensus       167 ~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp-~gla~dp~tg~~~-G~l~~~~~D~~G  244 (463)
T 2wg3_C          167 EEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDP-GRCAVDRHPTDIN-INLTILCSDSNG  244 (463)
T ss_dssp             HHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSC-CBEEEESSCSSTT-CSEEEEEECC--
T ss_pred             ccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCc-ceEEECCCCCCcc-cceEEEecccCC
Confidence                      335445554320      0            001111245444 4788888631000 12 343332111


Q ss_pred             ----eEEEEEeeCC------CceEEEeecC-CceEEEEECCC-------CCcEEEEEecCCEEEEEeCCCCCCCcceEEe
Q psy17342        293 ----SVKLWNIKEN------KPVHSFNEFR-DYVMDVQWSPI-------NPALFATVEVAGRVDLWNLNLDTEVPATSAI  354 (401)
Q Consensus       293 ----~i~iwd~~~~------~~~~~~~~~~-~~v~~v~~~~~-------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  354 (401)
                          .-.|..+..+      .++..+..|. ..+..+.|-..       +. +|+ +...+.|....+............
T Consensus       245 ~~~~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~-~f~-~~~~g~i~~~~~~~~~~~~~~~~~  322 (463)
T 2wg3_C          245 KNRSSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGS-YVF-GDRNGNFLTLQQSPVTKQWQEKPL  322 (463)
T ss_dssp             ----CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTC-EEE-EETTSCEEEEEC-----CCEEEEE
T ss_pred             CCCCCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcce-EEE-ecCCCcEEEEEeCCCCceeeEEEe
Confidence                2234444333      3555555432 46778887543       22 444 444466665555543222111111


Q ss_pred             e---------cCCCCeEEEEecCCCcEEEEEecC-----CcEEEEEecc
Q psy17342        355 V---------EGAPALSRVTWTPNGTQLCVGDEK-----GAITMFDVGE  389 (401)
Q Consensus       355 ~---------~~~~~v~~~~~s~~g~~l~~~~~d-----g~v~iw~~~~  389 (401)
                      .         .....+..+...|||.++++....     ..=+||.+..
T Consensus       323 ~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~~  371 (463)
T 2wg3_C          323 CLGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVD  371 (463)
T ss_dssp             CEEETTSSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEEC
T ss_pred             ecCCcccccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEecC
Confidence            0         113468999999999887776521     2346777763

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=83.13  E-value=18  Score=29.60  Aligned_cols=162  Identities=12%  Similarity=0.074  Sum_probs=92.7

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeC---cCCCCCceEEEecCCCeeEEEEeCC-CCceEEEEecCC
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNT---KFKKTTPEFEFFCQSPVLSCCFAKF-NPYLILGGTYSG  141 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~---~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~g~~dg  141 (401)
                      +.+..+.-.....+|+..+          ..|.++--.+   ....... + +.....|..+.. ++ ....++..+.+|
T Consensus        24 D~~~~~~~~~t~~~ll~fT----------~~G~v~~~~~~~lp~~~~~~-l-l~~~e~i~~v~~-~~~~~~~~v~~T~~G   90 (276)
T 3no0_A           24 APVVNILRVPFTEGLFLVS----------NRGRVYWIAGSQALQGSKVS-L-KSREEKIVGAFI-REKFGNRLLLATKKG   90 (276)
T ss_dssp             CCEEEEEEEETTSCEEEEE----------TTSEEEEECSHHHHTSEECC-C-SSTTCCEEEEEE-GGGSCSEEEEEETTS
T ss_pred             CeEEEEEEECCCCEEEEEc----------CCCeEEEEEhhhCccCcccc-c-CCCCCEEEEEEC-CcCCCCEEEEEeCCC
Confidence            4566665555566777777          6887765433   2221111 2 444567777754 42 335777888999


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCC------Cccccccccccc
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSS------PQETRDLQYNNK  215 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~------~~~~~~~~~~~~  215 (401)
                      .++-..+..-.....-...+.+.. .+.+..+..  ......++..+..|.+..+.......      ....+.+     
T Consensus        91 ~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~--~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L-----  162 (276)
T 3no0_A           91 YVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIAS--SVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKL-----  162 (276)
T ss_dssp             EEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEE--CCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-----
T ss_pred             EEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEE--eCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEcc-----
Confidence            999998765431000011122333 345555554  44556788888999988887653211      1111111     


Q ss_pred             cCCccceEEEEeccCCCCeEEEEcCCceEEEEeCC
Q psy17342        216 QTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRH  250 (401)
Q Consensus       216 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~  250 (401)
                      . ....|..+... .++..++..+..|.+....+.
T Consensus       163 ~-~~d~vv~~~~~-~~~~~ll~~T~~G~~kr~~~~  195 (276)
T 3no0_A          163 E-KNDETSGLRIW-NGEPYLLVITAKGRVKKISHE  195 (276)
T ss_dssp             C-TTCCEEEEEEE-SSCSEEEEEETTSCEEEEEGG
T ss_pred             C-CCCEEEEEEEe-CCCCEEEEEeCCCcEEEeEHH
Confidence            1 23456655554 456688888999998877654

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=82.38  E-value=34  Score=32.42  Aligned_cols=247  Identities=8%  Similarity=0.039  Sum_probs=121.2

Q ss_pred             eEEEE-ecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEec-CC------CeeEEEEeCCCCceEEEE--
Q psy17342         68 VTYMD-WSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QS------PVLSCCFAKFNPYLILGG--  137 (401)
Q Consensus        68 v~~~~-~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~~------~v~~~~~~~~~~~~l~~g--  137 (401)
                      ...+. ++|++++++.+--     ..|+.-..++++|+.+++.+..-.... ..      ....++|.. +..++++.  
T Consensus       131 ~~g~~~~~~~~~~~~~~ls-----~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~  204 (711)
T 4hvt_A          131 YRGVSNCFQNPNRYLISMS-----FGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWIN-KDTIIFNLVL  204 (711)
T ss_dssp             EEEEEECSSSTTEEEEEEE-----ETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEE-TTEEEECCCC
T ss_pred             EeceeecCCCCCEEEEEeC-----CCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEEC-CCEEEEEeCC
Confidence            44455 8999987766651     123445689999999876553211110 00      113447764 33444432  


Q ss_pred             --------ecCCeEEEEECCCCCCCceeeccccccCCCCcE-EEEEEeecCCce-----EEEEEeCC---CcEEEeeccC
Q psy17342        138 --------TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPV-FCMSVIGTQNAH-----NLISISND---GRLCSWSLEM  200 (401)
Q Consensus       138 --------~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~-----~l~s~~~d---g~i~~wd~~~  200 (401)
                              .....|+.|.+-+......    +.+.+....+ .....  +.++.     .+++.+.+   ..+.+.+...
T Consensus       205 ~~~~~~~~~~~~~v~~~~~Gt~~~~~~----~v~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  278 (711)
T 4hvt_A          205 HKNEITSSLYPNSLYIWKRGESIEKAK----KLFEVPKEYIYVSAGK--LLSDTISSSLIFISANKDFYNYDNYILDTKY  278 (711)
T ss_dssp             STTCBCTTSSBCEEEEEETTSCGGGCE----EEEECCTTSCEEEEEE--SSCTTTCSSEEEEEEESSSSCEEEEEEECSS
T ss_pred             CCCCcCcCCCCCEEEEEECCCChHHCe----EEeccCCCceEEEEEE--ecCCCceEEEEEEEEecccCceeEEEEcCCC
Confidence                    1224688888776543211    1122222222 22222  44544     34544423   2344445432


Q ss_pred             CCCCccccccccccccCCccceEEEEeccCCCCeEEEE----------cCCceEEEEeCCCCC-----CCceee-ec-CC
Q psy17342        201 LSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVG----------CEDGNVYSACRHGNK-----AGNVEC-YE-GH  263 (401)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----------~~d~~i~~~~~~~~~-----~~~~~~-~~-~~  263 (401)
                      ....  ...+..    .....   +... .++.+++..          ...+.|...++....     ...... +. ..
T Consensus       279 ~~~~--~~~l~~----~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (711)
T 4hvt_A          279 KNLK--LQKINM----PSDAT---LQGS-FKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA  348 (711)
T ss_dssp             SSCE--EEECCS----CTTCE---EEEE-ETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT
T ss_pred             CCCc--ceEeec----CCcce---Eeee-ECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC
Confidence            1111  111111    01111   1122 233333322          246678888876421     111222 22 23


Q ss_pred             CCceeeeecCccCCCCCCCcEEEEEeCCCe--EEEEEeeCCC-ceEE-Eeec-CCceEEEEECCCCCcEEEEEecC---C
Q psy17342        264 EGPVVGLSSHRAQGHIDFSHLYLTSSYDWS--VKLWNIKENK-PVHS-FNEF-RDYVMDVQWSPINPALFATVEVA---G  335 (401)
Q Consensus       264 ~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~-~~~~-~~~~-~~~v~~v~~~~~~~~~l~~~~~d---~  335 (401)
                      ...+..+.+..+       .++++...++.  +.++|+.+++ .... +... .+.+.....++++..++++.+..   +
T Consensus       349 ~~~l~~~~~~~~-------~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~  421 (711)
T 4hvt_A          349 NEVFNFISTTKD-------RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPP  421 (711)
T ss_dssp             TEEEEEEEECSS-------CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCC
T ss_pred             CCeEEEEEEECC-------EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCC
Confidence            345677887764       57777776764  6777777664 2333 3221 34577777778876666665432   5


Q ss_pred             EEEEEeCC
Q psy17342        336 RVDLWNLN  343 (401)
Q Consensus       336 ~i~iwd~~  343 (401)
                      .+..+|+.
T Consensus       422 ~~~~~d~~  429 (711)
T 4hvt_A          422 TIYLWVKT  429 (711)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            78888876

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=82.18  E-value=21  Score=29.79  Aligned_cols=198  Identities=12%  Similarity=0.115  Sum_probs=107.1

Q ss_pred             CCceEEEEEeCCCcEEEeeccCCCCCcc------ccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCC
Q psy17342        179 QNAHNLISISNDGRLCSWSLEMLSSPQE------TRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGN  252 (401)
Q Consensus       179 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~  252 (401)
                      ++...+++.+.+|.|+--.+........      .+.+.      ....+..+... .....++..+..|.++-+....-
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk------e~D~l~~~~~~-~~~~~ll~~T~~G~~~~~~~~~i   78 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN------DGDEIVIALCV-NTHDYLFMISNEGKLYLINAYEI   78 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC------TTCCEEEEEEE-ETTCEEEEEETTSEEEEEEGGGS
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC------CCCEEEEEEEE-CCCCEEEEEECCCeEEEEEHHHC
Confidence            4667889999999999887764322111      11111      22334444444 35567778888898877654311


Q ss_pred             C-------CCc---eeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC-------CceEEEeecCCce
Q psy17342        253 K-------AGN---VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN-------KPVHSFNEFRDYV  315 (401)
Q Consensus       253 ~-------~~~---~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v  315 (401)
                      .       +.+   ...+.. ...|.++...+...  . ...++..+..|.++.-.+..-       .....+.. ...+
T Consensus        79 p~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~--~-~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~l  153 (312)
T 1suu_A           79 KDSSRASKGQNISELINLGD-QEEILTIKNSKDLT--D-DAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFV  153 (312)
T ss_dssp             CC-------CBGGGTSCCCT-TCCEEEEEEESCCC--T-TCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCE
T ss_pred             CCCCccCCCcChhhccCCCC-CCEEEEEEEeccCC--C-CCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEE
Confidence            0       000   111221 22344442222100  0 467778888999998877432       22222333 3455


Q ss_pred             EEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcc-----eEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        316 MDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA-----TSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       316 ~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      ..+....... .++..+.+|.+..+....-.....     ..........|..+..-.++..|++.+..|..+..++..
T Consensus       154 v~~~~~~~~~-~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          154 TSAEIVFKDE-KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             EEEEEECTTC-EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred             EEEEEeCCCC-EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence            5555544344 466677899998888754211111     111122345566665555666788888899888888754

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=80.56  E-value=40  Score=31.98  Aligned_cols=102  Identities=8%  Similarity=-0.012  Sum_probs=57.6

Q ss_pred             CCCeEEEEEeeCCC-------ceEE-Eee-cCCceEEEEECCCCCcEEEEEecCCE--EEEEeCCCCC-CCcceEEeecC
Q psy17342        290 YDWSVKLWNIKENK-------PVHS-FNE-FRDYVMDVQWSPINPALFATVEVAGR--VDLWNLNLDT-EVPATSAIVEG  357 (401)
Q Consensus       290 ~d~~i~iwd~~~~~-------~~~~-~~~-~~~~v~~v~~~~~~~~~l~~~~~d~~--i~iwd~~~~~-~~~~~~~~~~~  357 (401)
                      ..+.|...|+.++.       .... +.. ....+..+.|..+.  ++++...++.  |.++|+.++. ....+ ...+.
T Consensus       318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--l~~~~~~~~~~~l~~~~~~~g~~~~~~~-i~lp~  394 (711)
T 4hvt_A          318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKDR--VFLATYDNVVAKVVTFTLENEQWTKPVV-LKLPY  394 (711)
T ss_dssp             CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSSC--EEEEEEETTEEEEEEECEETTEECCCEE-ECCCS
T ss_pred             CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECCE--EEEEEEECCEEEEEEEECCCCceEEEec-cCCCC
Confidence            46778888887642       2233 322 23467788888763  7788777775  6667765553 11210 11222


Q ss_pred             CCCeEEEEecCCCcEE-EEEec---CCcEEEEEeccCcccee
Q psy17342        358 APALSRVTWTPNGTQL-CVGDE---KGAITMFDVGEVGIACL  395 (401)
Q Consensus       358 ~~~v~~~~~s~~g~~l-~~~~~---dg~v~iw~~~~~~~~~l  395 (401)
                      ...+.....++++..+ ++.+.   -+.+..+|+. ++.+.+
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~~l  435 (711)
T 4hvt_A          395 QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELKII  435 (711)
T ss_dssp             TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEEEE
T ss_pred             CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEEEE
Confidence            3456667777776544 33332   3567777776 443333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	401
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.003
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.003

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.3 bits (152), Expect = 1e-11
 Identities = 35/256 (13%), Positives = 82/256 (32%), Gaps = 10/256 (3%)

Query: 51  LSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT 110
            +         W        M       ++    Y  + +      G   +     +   
Sbjct: 137 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 196

Query: 111 PEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVM-AHTHP 169
                  +  V +   +  +   I  G+    + +WD+          +       H   
Sbjct: 197 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 256

Query: 170 VFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL----AVLSL 225
           V+ +    T++  +++S S D  +  W+L+  ++  +++       +   +     VLS+
Sbjct: 257 VYSVVF--TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 314

Query: 226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLY 285
           A  QND    + G +D  V            +   +GH   V+ ++           +++
Sbjct: 315 ATTQND-EYILSGSKDRGVL--FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 371

Query: 286 LTSSYDWSVKLWNIKE 301
            T S D   ++W  K+
Sbjct: 372 ATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (117), Expect = 3e-07
 Identities = 36/257 (14%), Positives = 75/257 (29%), Gaps = 11/257 (4%)

Query: 95  PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKT 154
           PDG  L    + +          +  ++     +    L    +    +     R  +  
Sbjct: 131 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 190

Query: 155 PVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNN 214
            +     S+            +   +   + + S D  +  W  E     +       + 
Sbjct: 191 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG 250

Query: 215 KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSAC-RHGNKAGNVECYEGHEGPVVGLSSH 273
              K+ +V S+ F   D  + V G  D +V     ++ N   + +        V  +   
Sbjct: 251 TGHKD-SVYSVVF-TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 308

Query: 274 RAQGHIDFSH---LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPI-----NP 325
                +  +      L+ S D  V  W+ K   P+      R+ V+ V  +         
Sbjct: 309 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 368

Query: 326 ALFATVEVAGRVDLWNL 342
            +FAT     +  +W  
Sbjct: 369 NVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.9 bits (107), Expect = 4e-06
 Identities = 19/138 (13%), Positives = 44/138 (31%), Gaps = 10/138 (7%)

Query: 68  VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFA 127
           V  + ++     ++  S  R+ +  N  +      +      T E  +      +     
Sbjct: 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316

Query: 128 KFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHN---- 183
             N   IL G+    ++ WD +     P+      +  H + V  ++V    +       
Sbjct: 317 TQNDEYILSGSKDRGVLFWDKK--SGNPLL----MLQGHRNSVISVAVANGSSLGPEYNV 370

Query: 184 LISISNDGRLCSWSLEML 201
             + S D +   W  + +
Sbjct: 371 FATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 32/258 (12%), Positives = 69/258 (26%), Gaps = 9/258 (3%)

Query: 134 ILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRL 193
            L    +   +L++  + ++  V       + HT  V C+           ++   +   
Sbjct: 31  ALKKQTNDYYILYNPALPREIDV--ELHKSLDHTSVVCCVKFSNDGE---YLATGCNKTT 85

Query: 194 CSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK 253
             + +   S      D    NK  +NL   S       + +     +   + +       
Sbjct: 86  QVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLI 145

Query: 254 AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRD 313
                        + G            S   L S                        D
Sbjct: 146 RIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED 205

Query: 314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAP----ALSRVTWTPN 369
            V  V  SP +    A   +   V +W+      V    +  E       ++  V +T +
Sbjct: 206 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 265

Query: 370 GTQLCVGDEKGAITMFDV 387
           G  +  G    ++ ++++
Sbjct: 266 GQSVVSGSLDRSVKLWNL 283

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.4 bits (142), Expect = 2e-10
 Identities = 32/308 (10%), Positives = 80/308 (25%), Gaps = 46/308 (14%)

Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQK------------------------K 153
           +SPV    F      ++        I +WD                              
Sbjct: 17  RSPVTRVIFHPVFSVMVSAS-EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75

Query: 154 TPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGR-LCSWSLEMLSSPQETRDLQY 212
           +      + +          ++ G  +  + +SI  +G  + S S +      E +    
Sbjct: 76  SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 135

Query: 213 NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSS 272
               T +   + +  P  D         D  V        +         H   V  +S 
Sbjct: 136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE--CKAELREHRHVVECISW 193

Query: 273 HRAQGHIDFSH--------------LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDV 318
                +   S                 L+ S D ++K+W++     + +     ++V  V
Sbjct: 194 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV 253

Query: 319 QWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDE 378
            +         +      + +W+      +     +      ++ + +      +  G  
Sbjct: 254 LFHSGGK-FILSCADDKTLRVWDYKNKRCM---KTLNAHEHFVTSLDFHKTAPYVVTGSV 309

Query: 379 KGAITMFD 386
              + +++
Sbjct: 310 DQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.4 bits (129), Expect = 7e-09
 Identities = 43/290 (14%), Positives = 87/290 (30%), Gaps = 21/290 (7%)

Query: 63  SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVL 122
           S++  +   D+ T   E  L  +  + +  +      L+ +     T   ++F     + 
Sbjct: 36  SEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR 95

Query: 123 SCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMA-HTHPVFCMSVIGTQNA 181
           +      N   +        IV        K    +T   V     H  +   V   Q+ 
Sbjct: 96  TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG 155

Query: 182 HNLISISNDGRLCSWSLEMLSSPQETRDLQY-----------NNKQTKNLAVLSLAFPQN 230
             + S SND  +  W +       E R+ ++           +                 
Sbjct: 156 TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGK 215

Query: 231 DVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY 290
                + G  D  +            +    GH+  V G+  H     I      L+ + 
Sbjct: 216 PGPFLLSGSRDKTIKMWDVSTGMC--LMTLVGHDNWVRGVLFHSGGKFI------LSCAD 267

Query: 291 DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLW 340
           D ++++W+ K  + + + N    +V  + +    P    T  V   V +W
Sbjct: 268 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVW 316

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.7 bits (122), Expect = 5e-08
 Identities = 15/121 (12%), Positives = 39/121 (32%), Gaps = 8/121 (6%)

Query: 221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHID 280
            + ++ F  N  N F  G +D          ++      ++     +  +S  ++   + 
Sbjct: 228 DINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL- 285

Query: 281 FSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLW 340
                L    D++  +W+  +           + V  +  +  +    AT      + +W
Sbjct: 286 -----LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIW 339

Query: 341 N 341
           N
Sbjct: 340 N 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.7 bits (122), Expect = 6e-08
 Identities = 37/270 (13%), Positives = 90/270 (33%), Gaps = 25/270 (9%)

Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG 177
            + + +  +   +  L+      G++++WD+                 H  P+    V+ 
Sbjct: 55  LAKIYAMHWGTDSRLLVSAS-QDGKLIIWDSYTTN-----------KVHAIPLRSSWVMT 102

Query: 178 TQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV 237
              A +   ++  G     S+  L + +    +                     ++    
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG-----------HTGYLSCCRF 151

Query: 238 GCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLW 297
             ++  V S+        ++E  +             +      + L+++ + D S KLW
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211

Query: 298 NIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG 357
           +++E     +F      +  + + P N   FAT        L++L  D E+   S     
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNII 270

Query: 358 APALSRVTWTPNGTQLCVGDEKGAITMFDV 387
              ++ V+++ +G  L  G +     ++D 
Sbjct: 271 CG-ITSVSFSKSGRLLLAGYDDFNCNVWDA 299

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.7 bits (104), Expect = 9e-06
 Identities = 19/130 (14%), Positives = 35/130 (26%), Gaps = 18/130 (13%)

Query: 68  VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFA 127
           +  + +          S               L      ++            + S  F+
Sbjct: 229 INAICFFPNGNAFATGSDDAT---------CRLFDLRADQELMTYSHDNIICGITSVSFS 279

Query: 128 KFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISI 187
           K    L+ G        +WD     +  V         H + V C+ V  T +   + + 
Sbjct: 280 KSGRLLLAGY-DDFNCNVWDALKADRAGVLA------GHDNRVSCLGV--TDDGMAVATG 330

Query: 188 SNDGRLCSWS 197
           S D  L  W+
Sbjct: 331 SWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 16/130 (12%), Positives = 49/130 (37%), Gaps = 14/130 (10%)

Query: 260 YEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDY--VMD 317
           + GHE  +  +            + + T S D + +L++++ ++ + +++       +  
Sbjct: 222 FTGHESDINAICFFPN------GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275

Query: 318 VQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAP-ALSRVTWTPNGTQLCVG 376
           V +S  +  L          ++W+            ++ G    +S +  T +G  +  G
Sbjct: 276 VSFSK-SGRLLLAGYDDFNCNVWDALKADRA----GVLAGHDNRVSCLGVTDDGMAVATG 330

Query: 377 DEKGAITMFD 386
                + +++
Sbjct: 331 SWDSFLKIWN 340

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 27/319 (8%), Positives = 68/319 (21%), Gaps = 36/319 (11%)

Query: 93  NEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQK 152
                   + +              +    +   A  N    +   + G I   D    K
Sbjct: 14  TNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 73

Query: 153 KTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY 212
            T               ++  ++  + +   + +  N  +  +         +  R   +
Sbjct: 74  NTFHANLSSVPGEVGRSMYSFAI--SPDGKEVYATVNPTQRLND----HYVVKPPRLEVF 127

Query: 213 NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNK------------------- 253
           +         +        V   +   +DG++Y A     K                   
Sbjct: 128 STADGLEAKPVRTFPMPRQVY-LMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNR 186

Query: 254 -----AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSF 308
                   +  +            +      D      T+   +     ++K  K     
Sbjct: 187 KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE 246

Query: 309 NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTP 368
                  +                V  R+  +    D +                V +  
Sbjct: 247 FAD-LTELYFTGLRSPKDPNQIYGVLNRLAKY----DLKQRKLIKAANLDHTYYCVAFDK 301

Query: 369 NGTQLCVGDEKGAITMFDV 387
            G +L +G     + +F+ 
Sbjct: 302 KGDKLYLGGTFNDLAVFNP 320

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 10/111 (9%), Positives = 32/111 (28%), Gaps = 4/111 (3%)

Query: 282 SHLYLTSSYDWSVKLWNIKENKPVHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLW 340
               + ++Y  ++ + ++  +    S     +        +P N   +      G +   
Sbjct: 8   HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI 67

Query: 341 NLNLDTE---VPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVG 388
           +L+          +S   E   ++     +P+G ++               
Sbjct: 68  DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.6 bits (106), Expect = 6e-06
 Identities = 20/205 (9%), Positives = 54/205 (26%), Gaps = 18/205 (8%)

Query: 116 FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV 175
           F   P+    + K    + +    + ++ +++    K   VH     +  H   V  +  
Sbjct: 5   FLVEPISCHAWNKDRTQIAICP-NNHEVHIYEKSGNKWVQVH----ELKEHNGQVTGVDW 59

Query: 176 IGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNF 235
               +++ +++   D     W+L+  +       L+ N              P       
Sbjct: 60  --APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCV-----RWAPNEKKFAV 112

Query: 236 VVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVK 295
             G    ++    +  +        +     V       +      S L    S D+  +
Sbjct: 113 GSGSRVISICYFEQENDWWVCKHIKKPIRSTV------LSLDWHPNSVLLAAGSCDFKCR 166

Query: 296 LWNIKENKPVHSFNEFRDYVMDVQW 320
           +++    +                 
Sbjct: 167 IFSAYIKEVEERPAPTPWGSKMPFG 191

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 26/285 (9%), Positives = 65/285 (22%), Gaps = 12/285 (4%)

Query: 62  WSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPV 121
             K   V               +  +              +  +      +         
Sbjct: 84  TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST 143

Query: 122 LSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNA 181
           +       N  L+  G+   +  ++   +++                         +   
Sbjct: 144 VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW 203

Query: 182 HNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED 241
            + +  S +G   +W     +      D +       +  +  LA      ++ V    D
Sbjct: 204 VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHD 263

Query: 242 GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE 301
                     + A     + G        S         F +L   +S + S        
Sbjct: 264 CFPV--LFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA--AGAG 319

Query: 302 NKPVHSFNEFRDYVMDVQWSP---INPALFATVEVAGRVDLWNLN 343
              +H      + V  +          + F T  + G + +W++ 
Sbjct: 320 LDSLHK-----NSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 8e-06
 Identities = 37/312 (11%), Positives = 77/312 (24%), Gaps = 18/312 (5%)

Query: 68  VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEF--EFFCQSPVLSCC 125
           ++ +        LL+ S+          DG   ++    +    +       + P+L C 
Sbjct: 14  ISDIKIIPSKSLLLITSW----------DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 126 FAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLI 185
           F       I  GT  G+I+  D              + +                + + +
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 186 SISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQND-VNNFVVGCEDGNV 244
               D R     +  + +         N   T +     L    N+    +       + 
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183

Query: 245 YSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP 304
                       +           G +     G +             S K +  + ++ 
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243

Query: 305 VHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRV 364
                     V  +++SP       T    G +  WNL    ++             S V
Sbjct: 244 NLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKI----KNFAKFNEDSVV 298

Query: 365 TWTPNGTQLCVG 376
               +   LC+ 
Sbjct: 299 KIACSDNILCLA 310

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 27/156 (17%), Positives = 51/156 (32%), Gaps = 12/156 (7%)

Query: 227 FPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL 286
             Q D  + V G  D ++            +    GH+    G+            ++ +
Sbjct: 182 SLQFDGIHVVSGSLDTSIRVWDVETGN--CIHTLTGHQSLTSGMELK--------DNILV 231

Query: 287 TSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT 346
           + + D +VK+W+IK  + + +      +   V     N     T    G V LW+L    
Sbjct: 232 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE 291

Query: 347 EVPATSAIVEGA--PALSRVTWTPNGTQLCVGDEKG 380
            +     +  G     + R+  +       VG   G
Sbjct: 292 FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 40/303 (13%), Positives = 91/303 (30%), Gaps = 44/303 (14%)

Query: 53  FCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE 112
                  + W+                +     H  +      D    +W+ +  +    
Sbjct: 73  GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV 132

Query: 113 FEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFC 172
                 +        +     ++ G Y   + +WD   +          ++  HT+ V+ 
Sbjct: 133 LMGHVAAVRCVQYDGRR----VVSGAYDFMVKVWDPETETCLH------TLQGHTNRVYS 182

Query: 173 MSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDV 232
           +      +  +++S S D  +  W +E  +        Q             +    N  
Sbjct: 183 LQF----DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--------LTSGMELKDN-- 228

Query: 233 NNFVVGCEDGNVYS-ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD 291
              V G  D  V     + G     ++    H+  V  L  ++        +  +TSS D
Sbjct: 229 -ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--------NFVITSSDD 279

Query: 292 WSVKLWNIKENKPVHSFNEFR-----DYVMDVQWSPINPALFATVEVAG----RVDLWNL 342
            +VKLW++K  + + +            V  ++ S     + A     G    ++ + + 
Sbjct: 280 GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDF 338

Query: 343 NLD 345
           ++D
Sbjct: 339 DVD 341

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 27/279 (9%), Positives = 73/279 (26%), Gaps = 16/279 (5%)

Query: 118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPV---HRTPLSVMAHTHPVFCMS 174
              V++C   +F    I+ G+    + +W     K       H   +        +    
Sbjct: 16  DDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISG 73

Query: 175 VIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQ----- 229
                                     +           +  +   L V  +   Q     
Sbjct: 74  STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL 133

Query: 230 NDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL-TS 288
                 V   +           +    V   E                 + F  +++ + 
Sbjct: 134 MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSG 193

Query: 289 SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV 348
           S D S+++W+++    +H+    +     ++       +  +      V +W++     +
Sbjct: 194 SLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCL 250

Query: 349 PATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
                  +   A++ + +  N       D  G + ++D+
Sbjct: 251 QTLQGPNKHQSAVTCLQFNKNFVITSSDD--GTVKLWDL 287

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 8e-04
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 260 YEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQ 319
            +GH+  V+                 ++ S D ++K+W+    K + +       V   Q
Sbjct: 12  LKGHDDHVITCLQFCGN-------RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 64

Query: 320 WSP 322
              
Sbjct: 65  MRD 67

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 4e-05
 Identities = 26/289 (8%), Positives = 70/289 (24%), Gaps = 27/289 (9%)

Query: 96  DGVCLIWNTKFKKTTPEFEFF-------------CQSPVLSCCFAKFNPYLILGGTYSGQ 142
            G  L +    +  T +  F                +        +   + ++     G 
Sbjct: 88  SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT 147

Query: 143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS----- 197
             +W            T              S +        + IS  G + +       
Sbjct: 148 TYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTV 207

Query: 198 -LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGN 256
            +  LS+ +   + +  +    N   +         +   +  +  +      +  + G 
Sbjct: 208 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 267

Query: 257 VECYEGHEGPVVGL--------SSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSF 308
                                 S   +    D      ++ +D  ++ W++K  + + + 
Sbjct: 268 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 327

Query: 309 NEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG 357
           N   D +   +          ++   G  D+  L         + + E 
Sbjct: 328 NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES 376

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 13/104 (12%), Positives = 35/104 (33%), Gaps = 20/104 (19%)

Query: 257 VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFR---- 312
               + H+  +  +S+         +   ++ S D  +K+W+ K     +  ++      
Sbjct: 7   ANAGKAHDADIFSVSAC--------NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV 58

Query: 313 --------DYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV 348
                   D +  ++       L AT   +G +  + +  + E 
Sbjct: 59  HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET 102

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 26/307 (8%), Positives = 71/307 (23%), Gaps = 13/307 (4%)

Query: 91  APNEPDGVCLIWNTKFKKTTPEFEFFCQSP-VLSCCFAKFNPYLILGGTYSGQIVLWDTR 149
                    ++ +T+              P  +    A            S  +V  D  
Sbjct: 5   LAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64

Query: 150 VQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRD 209
             +                         + +   L    +  RL     E+  +     D
Sbjct: 65  TGE---TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 210 LQYN---NKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNV-ECYEGHEG 265
            +             +  LA+ ++    + +G +   +        +   +         
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181

Query: 266 PVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINP 325
               L+                ++               + + +     +   +   ++ 
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241

Query: 326 ALFATVEVAGRVDLWNLN-----LDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG 380
             F+T     +   +         D E  A+   V    +   V  + +G+ + +G   G
Sbjct: 242 FYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG 301

Query: 381 AITMFDV 387
            +  +D 
Sbjct: 302 DLAAYDA 308

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 8e-05
 Identities = 21/267 (7%), Positives = 54/267 (20%), Gaps = 22/267 (8%)

Query: 96  DGVCLIWNTK---FKKTTPEFEFFC-QSPVLSCCFAKFNPYLILGGTYSGQIVL------ 145
            G   +W+      K    + +     + + SC        LI+GG  S   +       
Sbjct: 71  KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130

Query: 146 ----------WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCS 195
                                             +    +            ++      
Sbjct: 131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190

Query: 196 WSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAG 255
            S +         D    +   +    L      + + +         +       N   
Sbjct: 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV 250

Query: 256 NVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYV 315
                       +  S   +         ++++  D  +  W       +    E    V
Sbjct: 251 LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSV 309

Query: 316 MDVQWSPINPALFATVEVAGRVDLWNL 342
           +    S  +     T     +  ++ +
Sbjct: 310 LSCDISV-DDKYIVTGSGDKKATVYEV 335

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 35/293 (11%), Positives = 86/293 (29%), Gaps = 13/293 (4%)

Query: 53  FCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE 112
              + +D K     +V     ST     ++   +         D    +W    + + P+
Sbjct: 74  RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD 133

Query: 113 FEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFC 172
                  P++     +   ++ +   +   +                   ++     + C
Sbjct: 134 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC 193

Query: 173 MSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDV 232
           + ++         +I +  R    S  M ++ +           T       +   +   
Sbjct: 194 LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD 253

Query: 233 NNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW 292
              V    DG++     +         +  H   +  +++     +I      L S  + 
Sbjct: 254 KFLVSAAADGSIRGWDANDYS----RKFSYHHTNLSAITTFYVSDNI------LVSGSEN 303

Query: 293 SVKLWNIKENKPVHS-FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL 344
              ++N++  K VH+   +  D +  V +      L A VE  G+  L  L+ 
Sbjct: 304 QFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEILDF 354

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 9/63 (14%)

Query: 261 EGHEGPVVGLSSHRAQGHIDFSHLYL-TSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQ 319
            GH   V+          + F   Y+ T + D  +++++    K +   +     V  ++
Sbjct: 9   RGHMTSVITC--------LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60

Query: 320 WSP 322
           ++ 
Sbjct: 61  YAH 63

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 11/138 (7%)

Query: 62  WSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPV 121
           W+ +        +     +    Y          D    +W+ +            +   
Sbjct: 163 WNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE----CGACLRVLEGHE 218

Query: 122 LSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSV---MAHTHPVFCMSVIGT 178
                 +F+   I+ G Y G+I +WD             L +   + H+  VF +     
Sbjct: 219 ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF 278

Query: 179 QNAHNLISISNDGRLCSW 196
           Q    ++S S+D  +  W
Sbjct: 279 Q----IVSSSHDDTILIW 292

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 22/287 (7%), Positives = 61/287 (21%), Gaps = 13/287 (4%)

Query: 101 IWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTP 160
           I++ +  K     E       +          +         + L   +           
Sbjct: 70  IYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM 129

Query: 161 LSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL 220
           ++    +         G    H          +  + +E       T +  ++     + 
Sbjct: 130 ITDFTISDN-SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA 188

Query: 221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHID 280
              +L +      +        N                     G              +
Sbjct: 189 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVS-----KPFVIPLIPGSPNPTKLVPRSMTSE 243

Query: 281 FSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLW 340
                L   Y  S  +     +  +    E    +  V       A +      G +  +
Sbjct: 244 AGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY 303

Query: 341 NLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
           ++         + +       + +  + +   + V  + G I  F +
Sbjct: 304 DVKTRKVTEVKNNL-------TDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 9/67 (13%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 278 HIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN--EFRDYVMDVQWSPINPALFATVEVAG 335
               S  + T   D ++++W++  +K V  +   + +     V           ++ + G
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318

Query: 336 RVDLWNL 342
            ++ + L
Sbjct: 319 TLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 30/281 (10%), Positives = 68/281 (24%), Gaps = 6/281 (2%)

Query: 107 KKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH 166
           K+  P      ++      +      +      S  +   D    K  PV +        
Sbjct: 6   KEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQF---TGHG 62

Query: 167 THPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLA 226
           +  V  +     + +  L S    G++  W                +  Q     +  ++
Sbjct: 63  SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDIS 122

Query: 227 FPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL 286
           +        VVG    N        +     E     +                      
Sbjct: 123 WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD- 181

Query: 287 TSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT 346
                   +    K +    + ++   +V DV++SP +     TV    ++  ++     
Sbjct: 182 --GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 239

Query: 347 EVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV 387
            +       E            +  +         I ++DV
Sbjct: 240 FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV 280

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	401
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.89
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.86
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.85
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.7
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.68
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.65
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.64
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.64
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.39
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.38
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.32
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.25
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.21
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.2
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.2
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.2
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.19
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.18
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.17
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.14
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.13
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.12
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.07
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.92
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.77
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.76
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.62
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.54
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.52
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.48
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.91
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.82
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.81
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.76
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.62
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.55
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.47
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.29
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.22
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.03
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.88
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.83
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.68
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.38
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.15
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.01
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.0
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.97
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.83
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.47
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.46
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.37
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.26
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.19
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.17
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	95.14
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.63
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.04
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.77
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	90.57
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.99
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	87.87
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	87.68
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	86.82
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	85.19

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-44  Score=311.99  Aligned_cols=285  Identities=11%  Similarity=0.197  Sum_probs=237.4

Q ss_pred             cccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCce---EE-EecCCCeeEEEEeCCCCceEEEE
Q psy17342         62 WSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE---FE-FFCQSPVLSCCFAKFNPYLILGG  137 (401)
Q Consensus        62 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~---~~-~~~~~~v~~~~~~~~~~~~l~~g  137 (401)
                      +.|...|.+++|+|+|++|++|+           ||.|+|||+.+......   .. ..|.+.|.+++|+|++ ++|++|
T Consensus        48 ~~H~~~V~~v~fs~~g~~latg~-----------dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg-~~l~s~  115 (337)
T d1gxra_          48 LNHGEVVCAVTISNPTRHVYTGG-----------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVG  115 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-----------BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-SEEEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEE-----------CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCC-CEEEEe
Confidence            36889999999999999999877           89999999986443322   11 2467889999999987 788999


Q ss_pred             ecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccC
Q psy17342        138 TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQT  217 (401)
Q Consensus       138 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  217 (401)
                      +.||.|++||+........    ..+..|...+.+++|  ++++..+++++.|+.+++|++....   ....     ...
T Consensus       116 ~~dg~i~iwd~~~~~~~~~----~~~~~~~~~v~~~~~--~~~~~~l~s~~~d~~i~~~~~~~~~---~~~~-----~~~  181 (337)
T d1gxra_         116 GEASTLSIWDLAAPTPRIK----AELTSSAPACYALAI--SPDSKVCFSCCSDGNIAVWDLHNQT---LVRQ-----FQG  181 (337)
T ss_dssp             ESSSEEEEEECCCC--EEE----EEEECSSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTE---EEEE-----ECC
T ss_pred             ecccccccccccccccccc----ccccccccccccccc--ccccccccccccccccccccccccc---cccc-----ccc
Confidence            9999999999986553222    234688999999999  9999999999999999999997522   1111     234


Q ss_pred             CccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEE
Q psy17342        218 KNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLW  297 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iw  297 (401)
                      |...+.+++|+ +++..+++++.|+.+++||++..  +.+..+ .|..+|.+++|+|+      ++++++++.|+.+++|
T Consensus       182 ~~~~v~~l~~s-~~~~~~~~~~~d~~v~i~d~~~~--~~~~~~-~~~~~i~~l~~~~~------~~~l~~~~~d~~i~i~  251 (337)
T d1gxra_         182 HTDGASCIDIS-NDGTKLWTGGLDNTVRSWDLREG--RQLQQH-DFTSQIFSLGYCPT------GEWLAVGMESSNVEVL  251 (337)
T ss_dssp             CSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTT--EEEEEE-ECSSCEEEEEECTT------SSEEEEEETTSCEEEE
T ss_pred             ccccccccccc-ccccccccccccccccccccccc--eeeccc-ccccceEEEEEccc------ccccceeccccccccc
Confidence            77899999999 89999999999999999999743  344444 48899999999998      7999999999999999


Q ss_pred             EeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEe
Q psy17342        298 NIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGD  377 (401)
Q Consensus       298 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  377 (401)
                      |+++++.. ....|...|.+++|+|+++ +|++++.||.|++||+.+++.+..    ..|...|++++|+|++++|++|+
T Consensus       252 d~~~~~~~-~~~~~~~~i~~v~~s~~g~-~l~s~s~Dg~i~iwd~~~~~~~~~----~~~~~~v~~~~~s~d~~~l~t~s  325 (337)
T d1gxra_         252 HVNKPDKY-QLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQ----SKESSSVLSCDISVDDKYIVTGS  325 (337)
T ss_dssp             ETTSSCEE-EECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE----EECSSCEEEEEECTTSCEEEEEE
T ss_pred             cccccccc-cccccccccceEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE----ccCCCCEEEEEEeCCCCEEEEEe
Confidence            99877654 5567899999999999997 899999999999999998775533    35778999999999999999999


Q ss_pred             cCCcEEEEEec
Q psy17342        378 EKGAITMFDVG  388 (401)
Q Consensus       378 ~dg~v~iw~~~  388 (401)
                      .||+|+|||+-
T Consensus       326 ~D~~I~vWdl~  336 (337)
T d1gxra_         326 GDKKATVYEVI  336 (337)
T ss_dssp             TTSCEEEEEEE
T ss_pred             CCCeEEEEEEE
Confidence            99999999983

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-42  Score=307.42  Aligned_cols=288  Identities=16%  Similarity=0.212  Sum_probs=229.7

Q ss_pred             cccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-----------------EecCCCeeEE
Q psy17342         62 WSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-----------------FFCQSPVLSC  124 (401)
Q Consensus        62 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-----------------~~~~~~v~~~  124 (401)
                      +.|.+.|+|++|+|+|++|++|+           |+.|+|||+.+++....+.                 ..+...|+++
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-----------d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l  127 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-----------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV  127 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-----------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-----------CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEE
Confidence            46889999999999999888766           8999999998765443321                 1245679999


Q ss_pred             EEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCC
Q psy17342        125 CFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSP  204 (401)
Q Consensus       125 ~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~  204 (401)
                      +|+|++ ++|++|+.||.|++|+....+..      ....+|...|.++.+  ++++..+++++.++.+++||.+...  
T Consensus       128 ~~s~~~-~~l~s~~~dg~v~i~~~~~~~~~------~~~~~h~~~v~~~~~--~~~~~~~~~~~~~~~i~~~d~~~~~--  196 (388)
T d1erja_         128 CFSPDG-KFLATGAEDRLIRIWDIENRKIV------MILQGHEQDIYSLDY--FPSGDKLVSGSGDRTVRIWDLRTGQ--  196 (388)
T ss_dssp             EECTTS-SEEEEEETTSCEEEEETTTTEEE------EEECCCSSCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTE--
T ss_pred             EECCCC-Ccceecccccccccccccccccc------ccccccccccccccc--ccccccccccccceeeeeeeccccc--
Confidence            999977 79999999999999999877643      234689999999999  8999999999999999999987521  


Q ss_pred             ccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCC-----ceeeecCCCCceeeeecCccCCCC
Q psy17342        205 QETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAG-----NVECYEGHEGPVVGLSSHRAQGHI  279 (401)
Q Consensus       205 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~~  279 (401)
                       .....      .+.....++.+.++++.+|++|+.|+.|++|+.......     ......+|..+|.+++|+|+    
T Consensus       197 -~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~----  265 (388)
T d1erja_         197 -CSLTL------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD----  265 (388)
T ss_dssp             -EEEEE------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT----
T ss_pred             -ccccc------ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCC----
Confidence             11111      133455667777689999999999999999998753311     11223468899999999998    


Q ss_pred             CCCcEEEEEeCCCeEEEEEeeCCC------------ceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC
Q psy17342        280 DFSHLYLTSSYDWSVKLWNIKENK------------PVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE  347 (401)
Q Consensus       280 ~~~~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  347 (401)
                        +++|++++.|+.|++||+++++            .......|...|.+++|+|+++ +|++|+.||.|++||+++++.
T Consensus       266 --~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~~~  342 (388)
T d1erja_         266 --GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGNP  342 (388)
T ss_dssp             --SSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTCCE
T ss_pred             --CCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcE
Confidence              7999999999999999997643            2344556888999999999997 899999999999999999876


Q ss_pred             CcceEEeecCCCCeEEEE------ecCCCcEEEEEecCCcEEEEEec
Q psy17342        348 VPATSAIVEGAPALSRVT------WTPNGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       348 ~~~~~~~~~~~~~v~~~~------~s~~g~~l~~~~~dg~v~iw~~~  388 (401)
                      +..+   .+|...|++++      |+|++++|++|+.||+|+||+++
T Consensus       343 ~~~l---~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         343 LLML---QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEE---ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEE---eCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            6554   36788899887      46789999999999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.1e-42  Score=292.98  Aligned_cols=287  Identities=11%  Similarity=0.119  Sum_probs=232.3

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      .+++.+..++++|+|+.|+.+.           ++.|.+|++++......+ ..|...|++++|+|++ ++|++|+.||+
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-----------~~~v~i~~~~~~~~~~~~-~~H~~~v~~~~~sp~g-~~latg~~dg~   81 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-----------GTSVYTVPVGSLTDTEIY-TEHSHQTTVAKTSPSG-YYCASGDVHGN   81 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-----------TTEEEEEETTCSSCCEEE-CCCSSCEEEEEECTTS-SEEEEEETTSE
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-----------CCEEEEEECCCCceeEEE-cCCCCCEEEEEEeCCC-CeEeccccCce
Confidence            4456678899999999999887           778999999976655443 4678999999999987 79999999999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC--CcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND--GRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      |++||+........    ..+..|.++|.+++|  ++++.+|++++.+  ..+++|+++... ...  .     +.+|..
T Consensus        82 i~iwd~~~~~~~~~----~~~~~~~~~v~~v~~--s~d~~~l~~~~~~~~~~~~v~~~~~~~-~~~--~-----l~~h~~  147 (311)
T d1nr0a1          82 VRIWDTTQTTHILK----TTIPVFSGPVKDISW--DSESKRIAAVGEGRERFGHVFLFDTGT-SNG--N-----LTGQAR  147 (311)
T ss_dssp             EEEEESSSTTCCEE----EEEECSSSCEEEEEE--CTTSCEEEEEECCSSCSEEEEETTTCC-BCB--C-----CCCCSS
T ss_pred             Eeeeeeeccccccc----cccccccCccccccc--ccccccccccccccccccccccccccc-ccc--c-----cccccc
Confidence            99999988765422    224689999999999  9999999999864  569999987532 221  1     344788


Q ss_pred             ceEEEEeccCCCC-eEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        221 AVLSLAFPQNDVN-NFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       221 ~v~~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      .|++++|+ ++++ .+++|+.|+.|++||.+.  .+....+.+|..+|+++.++|+      ++++++++.|+.|++||.
T Consensus       148 ~v~~v~~~-~~~~~~l~sgs~d~~i~i~d~~~--~~~~~~~~~~~~~i~~v~~~p~------~~~l~~~~~d~~v~~~d~  218 (311)
T d1nr0a1         148 AMNSVDFK-PSRPFRIISGSDDNTVAIFEGPP--FKFKSTFGEHTKFVHSVRYNPD------GSLFASTGGDGTIVLYNG  218 (311)
T ss_dssp             CEEEEEEC-SSSSCEEEEEETTSCEEEEETTT--BEEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEET
T ss_pred             cccccccc-ccceeeecccccccccccccccc--cccccccccccccccccccCcc------cccccccccccccccccc
Confidence            99999999 5666 588899999999999984  3467788899999999999998      799999999999999999


Q ss_pred             eCCCceEEEe-------ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcE
Q psy17342        300 KENKPVHSFN-------EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQ  372 (401)
Q Consensus       300 ~~~~~~~~~~-------~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  372 (401)
                      ++++.+..+.       +|...|++++|+|+++ +|++|+.||.|+|||+++++.+..+.........+.++  .+++..
T Consensus       219 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~-~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~--~~~~~~  295 (311)
T d1nr0a1         219 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI--IWTKQA  295 (311)
T ss_dssp             TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEE--EECSSC
T ss_pred             ccccccccccccccccccccccccccccCCCCC-EEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEE--EecCCE
Confidence            9887777664       4788999999999997 89999999999999999887655543211112234444  445668


Q ss_pred             EEEEecCCcEEEEEec
Q psy17342        373 LCVGDEKGAITMFDVG  388 (401)
Q Consensus       373 l~~~~~dg~v~iw~~~  388 (401)
                      |++++.||.|++||++
T Consensus       296 l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         296 LVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEETTCCEEEEETT
T ss_pred             EEEEECCCEEEEEeCC
Confidence            9999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.5e-42  Score=293.64  Aligned_cols=289  Identities=13%  Similarity=0.160  Sum_probs=248.6

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      +|.++|++++|+|++++|++++          .|++|+|||+.+++.+..+. .|...|.+++|+|++ .+++++..++.
T Consensus        15 GH~~~I~~l~~sp~~~~l~s~s----------~Dg~i~iWd~~~~~~~~~~~-~h~~~V~~~~~~~~~-~~~~~~~~~~~   82 (317)
T d1vyhc1          15 GHRSPVTRVIFHPVFSVMVSAS----------EDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSG-KLLASCSADMT   82 (317)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEE----------SSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTS-SEEEEEETTSC
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCCEEEEEe-CCCCcEEEEeeeccc-ccccccccccc
Confidence            5889999999999999999999          79999999999887766543 468899999999977 78888899999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      +.+|+.......      ..+..|...+.++.+  ++++..+++++.|+.+++||++...   ....     +..|...+
T Consensus        83 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~-----~~~~~~~~  146 (317)
T d1vyhc1          83 IKLWDFQGFECI------RTMHGHDHNVSSVSI--MPNGDHIVSASRDKTIKMWEVQTGY---CVKT-----FTGHREWV  146 (317)
T ss_dssp             CCEEETTSSCEE------ECCCCCSSCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCC---EEEE-----EECCSSCE
T ss_pred             cccccccccccc------cccccccccceeeec--cCCCceEEeeccCcceeEeecccce---eeeE-----EccCCCcc
Confidence            999998876543      234688999999999  8999999999999999999997532   1222     23477889


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCC--------------CCCcEEEEE
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHI--------------DFSHLYLTS  288 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~--------------~~~~~l~s~  288 (401)
                      .+++|+ +++.+|++++.|+.|++|+....  .....+.+|...+.++.++|.....              ..+.+++++
T Consensus       147 ~~~~~~-~~~~~l~~~~~d~~v~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (317)
T d1vyhc1         147 RMVRPN-QDGTLIASCSNDQTVRVWVVATK--ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG  223 (317)
T ss_dssp             EEEEEC-TTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred             eeeecc-cCCCEEEEEeCCCeEEEEeeccc--eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEec
Confidence            999999 89999999999999999999844  4677888999999999998763210              114579999


Q ss_pred             eCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecC
Q psy17342        289 SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTP  368 (401)
Q Consensus       289 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~  368 (401)
                      +.|+.|++||+++++++.++.+|...|.+++|+|+++ +|++++.||.|++||+.+++.+..+   ..|...|++++|+|
T Consensus       224 ~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~---~~h~~~V~~~~~s~  299 (317)
T d1vyhc1         224 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRCMKTL---NAHEHFVTSLDFHK  299 (317)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTSCCCEEE---ECCSSCEEEEEECS
T ss_pred             cCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCC-EEEEEECCCeEEEEECCCCcEEEEE---cCCCCCEEEEEEcC
Confidence            9999999999999999999999999999999999997 7899999999999999988876555   36788999999999


Q ss_pred             CCcEEEEEecCCcEEEEE
Q psy17342        369 NGTQLCVGDEKGAITMFD  386 (401)
Q Consensus       369 ~g~~l~~~~~dg~v~iw~  386 (401)
                      ++++|++|+.||+|+|||
T Consensus       300 ~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         300 TAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEEEeCCCeEEEeC
Confidence            999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-42  Score=304.21  Aligned_cols=296  Identities=14%  Similarity=0.110  Sum_probs=234.7

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE-ecCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF-FCQSPVLSCCFAKFNPYLILGGTYSGQIV  144 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~v~  144 (401)
                      ++|+|++|+|+|++||+++          .|+.|+|||+++++......+ +|.++|.+++|+|++ ++|++|+.|++|+
T Consensus         8 ~pIt~~~~s~dg~~la~~~----------~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~-~~l~s~s~D~~i~   76 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICP----------NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAY   76 (371)
T ss_dssp             SCCCEEEECTTSSEEEEEC----------SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEE
T ss_pred             CCeEEEEECCCCCEEEEEe----------CCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCC-CEEEEEECCCeEE
Confidence            7799999999999999988          799999999987654444433 488999999999977 7899999999999


Q ss_pred             EEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342        145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS  224 (401)
Q Consensus       145 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (401)
                      +||+.+......    ..+..|...|.+++|  +|+++.|++++.|+.+++|++............    ...|...|.+
T Consensus        77 vWd~~~~~~~~~----~~~~~~~~~v~~i~~--~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~----~~~~~~~v~~  146 (371)
T d1k8kc_          77 VWTLKGRTWKPT----LVILRINRAARCVRW--APNEKKFAVGSGSRVISICYFEQENDWWVCKHI----KKPIRSTVLS  146 (371)
T ss_dssp             EEEEETTEEEEE----EECCCCSSCEEEEEE--CTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE----CTTCCSCEEE
T ss_pred             EEeecccccccc----ccccccccccccccc--ccccccceeecccCcceeeeeeccccccccccc----cccccccccc
Confidence            999987654332    234678999999999  999999999999999999998753322111111    3457889999


Q ss_pred             EEeccCCCCeEEEEcCCceEEEEeCCCCC----------------CCceeeecCCCCceeeeecCccCCCCCCCcEEEEE
Q psy17342        225 LAFPQNDVNNFVVGCEDGNVYSACRHGNK----------------AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTS  288 (401)
Q Consensus       225 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~----------------~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~  288 (401)
                      ++|+ |++.+|++|+.|+.|++|+.....                ...+....+|...|.+++|+|+      +++|+++
T Consensus       147 v~~~-p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~s~  219 (371)
T d1k8kc_         147 LDWH-PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN------GSRVAWV  219 (371)
T ss_dssp             EEEC-TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS------SSEEEEE
T ss_pred             cccc-ccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecc------ccccccc
Confidence            9999 799999999999999999976432                1234455678899999999998      7999999


Q ss_pred             eCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcce-----------------
Q psy17342        289 SYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPAT-----------------  351 (401)
Q Consensus       289 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----------------  351 (401)
                      +.|+.|++||+.+++.+..+..|..+|.+++|+|+++ ++++| .|+.+++|..........+                 
T Consensus       220 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~-~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (371)
T d1k8kc_         220 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA  297 (371)
T ss_dssp             ETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred             ccCCcceEEeeecccceeeeecccccceeeeecCCCC-EEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccc
Confidence            9999999999999999999999999999999999996 66655 5777777654332110000                 


Q ss_pred             ---------------------EEeecCCCCeEEEEecCCC----cEEEEEecCCcEEEEEeccCc
Q psy17342        352 ---------------------SAIVEGAPALSRVTWTPNG----TQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       352 ---------------------~~~~~~~~~v~~~~~s~~g----~~l~~~~~dg~v~iw~~~~~~  391 (401)
                                           .....|...|+++++.+.+    ..+++++.||.|++||+++.+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~  362 (371)
T d1k8kc_         298 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  362 (371)
T ss_dssp             HHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             eeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcCh
Confidence                                 0001256689999998754    468999999999999997743

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.1e-40  Score=281.68  Aligned_cols=287  Identities=15%  Similarity=0.190  Sum_probs=224.7

Q ss_pred             cccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC
Q psy17342         62 WSKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG  141 (401)
Q Consensus        62 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg  141 (401)
                      .+|.++|++++|+|++++|++++          .|++|++||+++++....+...|...|++++|+|++ .++ +++.|+
T Consensus         9 ~GH~~~V~~l~~s~dg~~l~s~s----------~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~~-~~~~d~   76 (299)
T d1nr0a2           9 YGHNKAITALSSSADGKTLFSAD----------AEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-DLF-TVSWDD   76 (299)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEE----------TTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-CEE-EEETTT
T ss_pred             CCCCCCcEEEEECCCCCEEEEEc----------CCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc-eee-ccccee
Confidence            46889999999999999999999          799999999998776655444578899999999977 455 455799


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccc
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLA  221 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  221 (401)
                      .+++|+..........   .....+...+.++++  ++++..+++++ ++.+.+|+...   ..   ...      ....
T Consensus        77 ~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--s~~g~~~~~~~-~~~i~~~~~~~---~~---~~~------~~~~  138 (299)
T d1nr0a2          77 HLKVVPAGGSGVDSSK---AVANKLSSQPLGLAV--SADGDIAVAAC-YKHIAIYSHGK---LT---EVP------ISYN  138 (299)
T ss_dssp             EEEEECSSSSSSCTTS---CCEEECSSCEEEEEE--CTTSSCEEEEE-SSEEEEEETTE---EE---EEE------CSSC
T ss_pred             eEEEeccCCccccccc---ccccccccccccccc--ccccccccccc-ccccccccccc---cc---ccc------cccc
Confidence            9999998765432111   122467788999999  88888776655 56899998642   11   111      2346


Q ss_pred             eEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342        222 VLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE  301 (401)
Q Consensus       222 v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  301 (401)
                      +.+++|+ ++++++++|+.|+.|++||++...... .....|..+|++++|+|+      +.+|++++.|+.|++||+.+
T Consensus       139 ~~~~~~s-~~~~~l~~g~~dg~i~~~d~~~~~~~~-~~~~~~~~~i~~~~~~~~------~~~l~~~~~d~~i~~~~~~~  210 (299)
T d1nr0a2         139 SSCVALS-NDKQFVAVGGQDSKVHVYKLSGASVSE-VKTIVHPAEITSVAFSNN------GAFLVATDQSRKVIPYSVAN  210 (299)
T ss_dssp             EEEEEEC-TTSCEEEEEETTSEEEEEEEETTEEEE-EEEEECSSCEEEEEECTT------SSEEEEEETTSCEEEEEGGG
T ss_pred             ccccccc-ccccccccccccccccccccccccccc-cccccccccccccccccc------cccccccccccccccccccc
Confidence            7889999 899999999999999999997543222 233468999999999998      79999999999999999987


Q ss_pred             CCce---EEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEec
Q psy17342        302 NKPV---HSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDE  378 (401)
Q Consensus       302 ~~~~---~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  378 (401)
                      +...   ..+..|...|++++|+|+++ +|++|+.||.|++||+++............+...+..+.| +++++|++++.
T Consensus       211 ~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~  288 (299)
T d1nr0a2         211 NFELAHTNSWTFHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQ  288 (299)
T ss_dssp             TTEESCCCCCCCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEET
T ss_pred             ccccccccccccccccccccccccccc-ceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeC
Confidence            6544   34566899999999999997 8999999999999999987765554432233455666654 66789999999


Q ss_pred             CCcEEEEEec
Q psy17342        379 KGAITMFDVG  388 (401)
Q Consensus       379 dg~v~iw~~~  388 (401)
                      ||.|++||+.
T Consensus       289 D~~i~iWdl~  298 (299)
T d1nr0a2         289 DSNIKFWNVP  298 (299)
T ss_dssp             TSCEEEEECC
T ss_pred             CCEEEEEecc
Confidence            9999999984

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-39  Score=282.95  Aligned_cols=276  Identities=13%  Similarity=0.165  Sum_probs=225.2

Q ss_pred             hhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEE
Q psy17342          3 WAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLL   82 (401)
Q Consensus         3 ~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   82 (401)
                      +..-+.+|+||+ ||.|+|||+........+                  .     ......|.+.|.+++|+|++++|++
T Consensus        59 fs~~g~~latg~-dg~V~iWd~~~~~~~~~~------------------~-----~~~~~~h~~~I~~v~~s~dg~~l~s  114 (337)
T d1gxra_          59 ISNPTRHVYTGG-KGCVKVWDISHPGNKSPV------------------S-----QLDCLNRDNYIRSCKLLPDGCTLIV  114 (337)
T ss_dssp             ECSSSSEEEEEC-BSEEEEEETTSTTCCSCS------------------E-----EEECSCTTSBEEEEEECTTSSEEEE
T ss_pred             ECCCCCEEEEEE-CCEEEEEEccCCccccee------------------E-----EeeecCCCCcEEEEEEcCCCCEEEE
Confidence            445678899998 899999998765522111                  0     0111256788999999999999999


Q ss_pred             EEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-EecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccc
Q psy17342         83 ASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-FFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPL  161 (401)
Q Consensus        83 ~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~  161 (401)
                      ++          .|+.|++||+.......... ..|...+.+++|+|++ .++++++.++.|++|++.+.+..      .
T Consensus       115 ~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~~------~  177 (337)
T d1gxra_         115 GG----------EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLV------R  177 (337)
T ss_dssp             EE----------SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE------E
T ss_pred             ee----------ccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc------c
Confidence            99          79999999997544332222 3467889999999976 78899999999999999887643      2


Q ss_pred             cccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC
Q psy17342        162 SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED  241 (401)
Q Consensus       162 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  241 (401)
                      ....|...|.+++|  ++++..+++++.|+.+++||++... ..   ..     ..+...|.+++|+ ++++.+++|+.|
T Consensus       178 ~~~~~~~~v~~l~~--s~~~~~~~~~~~d~~v~i~d~~~~~-~~---~~-----~~~~~~i~~l~~~-~~~~~l~~~~~d  245 (337)
T d1gxra_         178 QFQGHTDGASCIDI--SNDGTKLWTGGLDNTVRSWDLREGR-QL---QQ-----HDFTSQIFSLGYC-PTGEWLAVGMES  245 (337)
T ss_dssp             EECCCSSCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTE-EE---EE-----EECSSCEEEEEEC-TTSSEEEEEETT
T ss_pred             cccccccccccccc--cccccccccccccccccccccccce-ee---cc-----cccccceEEEEEc-ccccccceeccc
Confidence            34679999999999  8999999999999999999997522 11   11     2266789999999 799999999999


Q ss_pred             ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEEC
Q psy17342        242 GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWS  321 (401)
Q Consensus       242 ~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~  321 (401)
                      +.+++||++...   ......|...|++++|+|+      +++|++++.|+.|++||+.+++++..+. |...|.+++|+
T Consensus       246 ~~i~i~d~~~~~---~~~~~~~~~~i~~v~~s~~------g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s  315 (337)
T d1gxra_         246 SNVEVLHVNKPD---KYQLHLHESCVLSLKFAYC------GKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDIS  315 (337)
T ss_dssp             SCEEEEETTSSC---EEEECCCSSCEEEEEECTT------SSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC
T ss_pred             cccccccccccc---cccccccccccceEEECCC------CCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEe
Confidence            999999997543   3456779999999999998      7999999999999999999999887765 67899999999


Q ss_pred             CCCCcEEEEEecCCEEEEEeC
Q psy17342        322 PINPALFATVEVAGRVDLWNL  342 (401)
Q Consensus       322 ~~~~~~l~~~~~d~~i~iwd~  342 (401)
                      |+++ +|++++.||.|+|||+
T Consensus       316 ~d~~-~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         316 VDDK-YIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TTSC-EEEEEETTSCEEEEEE
T ss_pred             CCCC-EEEEEeCCCeEEEEEE
Confidence            9997 7899999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.2e-39  Score=280.02  Aligned_cols=286  Identities=16%  Similarity=0.259  Sum_probs=235.1

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      +|.++|++++|+|++++|++|+          .||+|+|||+.+++.+..+. .|...|.+++|+|++ .++++|+.|+.
T Consensus        53 GH~~~I~~l~~s~~~~~l~sgs----------~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~v~~~~~~-~~l~~~~~d~~  120 (340)
T d1tbga_          53 GHLAKIYAMHWGTDSRLLVSAS----------QDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSG-NYVACGGLDNI  120 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEE----------TTTEEEEEETTTTEEEEEEE-CSCSCEEEEEECTTS-SEEEEEETTCC
T ss_pred             CCCCCEEEEEECCCCCEEEEEE----------CCCceeeeecccceeEEEEe-cccccEEeeEeeccc-eeeeeecccce
Confidence            5889999999999999999999          79999999999877655443 468899999999977 78999999999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      +.+|+...........  ..+.+|.........   ..+..+.....+.....+......   ....     ...+...+
T Consensus       121 i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~  187 (340)
T d1tbga_         121 CSIYNLKTREGNVRVS--RELAGHTGYLSCCRF---LDDNQIVTSSGDTTCALWDIETGQ---QTTT-----FTGHTGDV  187 (340)
T ss_dssp             EEEEESSSSCSCCCEE--EEECCCSSCEEEEEE---EETTEEEEEETTTEEEEEETTTTE---EEEE-----EECCSSCE
T ss_pred             eecccccccccccccc--eeccccccccccccc---cccccccccccccccccccccccc---cccc-----ccccceeE
Confidence            9999987765432221  234567777666655   344567778888888888876421   1111     12255678


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN  302 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  302 (401)
                      ....+. +....+++|+.|+.|++||++.  ..++..+.+|..+|++++|+|+      +++|++|+.|+.|++||++..
T Consensus       188 ~~~~~~-~~~~~~~~~~~d~~v~i~d~~~--~~~~~~~~~h~~~i~~v~~~p~------~~~l~s~s~d~~i~~~~~~~~  258 (340)
T d1tbga_         188 MSLSLA-PDTRLFVSGACDASAKLWDVRE--GMCRQTFTGHESDINAICFFPN------GNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             EEEEEC-TTSSEEEEEETTTEEEEEETTT--TEEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTT
T ss_pred             eeeccc-cccceeEEeecCceEEEEECCC--CcEEEEEeCCCCCeEEEEECCC------CCEEEEEeCCCeEEEEeeccc
Confidence            888888 7889999999999999999974  4467888999999999999998      799999999999999999988


Q ss_pred             CceEEEe--ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCC
Q psy17342        303 KPVHSFN--EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKG  380 (401)
Q Consensus       303 ~~~~~~~--~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  380 (401)
                      +.+..+.  .+...|.+++|+|+++ +|++|+.||.|++||+.+++.+..+   .+|...|++++|+|++++|++|+.||
T Consensus       259 ~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~---~~H~~~V~~l~~s~d~~~l~s~s~Dg  334 (340)
T d1tbga_         259 QELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVL---AGHDNRVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             EEEEEECCTTCCSCEEEEEECSSSC-EEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             ccccccccccccCceEEEEECCCCC-EEEEEECCCEEEEEECCCCcEEEEE---cCCCCCEEEEEEeCCCCEEEEEccCC
Confidence            8777664  3567799999999997 8999999999999999988765443   46788999999999999999999999


Q ss_pred             cEEEEE
Q psy17342        381 AITMFD  386 (401)
Q Consensus       381 ~v~iw~  386 (401)
                      .|+|||
T Consensus       335 ~v~iWd  340 (340)
T d1tbga_         335 FLKIWN  340 (340)
T ss_dssp             CEEEEC
T ss_pred             EEEEeC
Confidence            999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8e-38  Score=267.64  Aligned_cols=255  Identities=14%  Similarity=0.133  Sum_probs=210.0

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS  197 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd  197 (401)
                      .+.+..++++|++ +.|+.+ .++.|.+|++++.....      .+.+|.+.|++++|  +|++++|++|+.||+|++||
T Consensus        17 r~~~~~~a~~~~g-~~l~~~-~~~~v~i~~~~~~~~~~------~~~~H~~~v~~~~~--sp~g~~latg~~dg~i~iwd   86 (311)
T d1nr0a1          17 RGTAVVLGNTPAG-DKIQYC-NGTSVYTVPVGSLTDTE------IYTEHSHQTTVAKT--SPSGYYCASGDVHGNVRIWD   86 (311)
T ss_dssp             TTCCCCCEECTTS-SEEEEE-ETTEEEEEETTCSSCCE------EECCCSSCEEEEEE--CTTSSEEEEEETTSEEEEEE
T ss_pred             CCCeEEEEEcCCC-CEEEEE-eCCEEEEEECCCCceeE------EEcCCCCCEEEEEE--eCCCCeEeccccCceEeeee
Confidence            4566788999988 556665 46789999998876542      24689999999999  99999999999999999999


Q ss_pred             ccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC--ceEEEEeCCCCCCCceeeecCCCCceeeeecCcc
Q psy17342        198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED--GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRA  275 (401)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  275 (401)
                      +....... ...     +..|..+|.+++|+ ++++++++++.+  ..+++|+....  +....+.+|...|++++|+|+
T Consensus        87 ~~~~~~~~-~~~-----~~~~~~~v~~v~~s-~d~~~l~~~~~~~~~~~~v~~~~~~--~~~~~l~~h~~~v~~v~~~~~  157 (311)
T d1nr0a1          87 TTQTTHIL-KTT-----IPVFSGPVKDISWD-SESKRIAAVGEGRERFGHVFLFDTG--TSNGNLTGQARAMNSVDFKPS  157 (311)
T ss_dssp             SSSTTCCE-EEE-----EECSSSCEEEEEEC-TTSCEEEEEECCSSCSEEEEETTTC--CBCBCCCCCSSCEEEEEECSS
T ss_pred             eecccccc-ccc-----cccccCcccccccc-ccccccccccccccccccccccccc--ccccccccccccccccccccc
Confidence            98633221 122     23478899999999 789999888754  55899998743  456778899999999999998


Q ss_pred             CCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEE--
Q psy17342        276 QGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSA--  353 (401)
Q Consensus       276 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--  353 (401)
                      .     ...|++|+.|+.|++||+++++....+..|...|.++.|+|+++ ++++++.|+.|++||+.++.....+..  
T Consensus       158 ~-----~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~-~l~~~~~d~~v~~~d~~~~~~~~~~~~~~  231 (311)
T d1nr0a1         158 R-----PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDS  231 (311)
T ss_dssp             S-----SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBCTT
T ss_pred             c-----eeeecccccccccccccccccccccccccccccccccccCcccc-ccccccccccccccccccccccccccccc
Confidence            4     34689999999999999999999999999999999999999997 899999999999999988765433321  


Q ss_pred             --eecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeeee
Q psy17342        354 --IVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT  399 (401)
Q Consensus       354 --~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~~  399 (401)
                        ..+|...|++++|+|++++|++|+.||.|+|||++++  +++++++
T Consensus       232 ~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~--~~~~~l~  277 (311)
T d1nr0a1         232 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL--KVEKTIP  277 (311)
T ss_dssp             SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEE
T ss_pred             cccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC--cEEEEEE
Confidence              1346778999999999999999999999999999988  5666654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-38  Score=281.02  Aligned_cols=302  Identities=17%  Similarity=0.203  Sum_probs=223.1

Q ss_pred             chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeE
Q psy17342          2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELL   81 (401)
Q Consensus         2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   81 (401)
                      .|..-+.++++|+ |+.|+||++.....+..+..+..      .    ..............|...|.+++|+|++++|+
T Consensus        69 ~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          69 KFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSA------A----NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------------------------CCCCBEEEEEECTTSSEEE
T ss_pred             EECCCCCEEEEEe-CCeEEEEEecccceEeeeccccc------c----cccccccccccccCCCCCEEEEEECCCCCcce
Confidence            4666678999997 99999999877664322211111      0    00000111112234678899999999999999


Q ss_pred             EEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccc
Q psy17342         82 LASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPL  161 (401)
Q Consensus        82 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~  161 (401)
                      +++          .|+.|++||...++.... ...|...|.+++|++++ ..+++|+.++.+++||..+......     
T Consensus       138 s~~----------~dg~v~i~~~~~~~~~~~-~~~h~~~v~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~-----  200 (388)
T d1erja_         138 TGA----------EDRLIRIWDIENRKIVMI-LQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLT-----  200 (388)
T ss_dssp             EEE----------TTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEE-----
T ss_pred             ecc----------cccccccccccccccccc-ccccccccccccccccc-ccccccccceeeeeeeccccccccc-----
Confidence            999          799999999987655433 33478899999999976 6888889999999999987654311     


Q ss_pred             cccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC
Q psy17342        162 SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED  241 (401)
Q Consensus       162 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  241 (401)
                        ..+.....++.+. .+++.+|++++.|+.|++|+.+.... ............+|...|.+++|+ +++++|++++.|
T Consensus       201 --~~~~~~~~~~~~~-~~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~s~~~d  275 (388)
T d1erja_         201 --LSIEDGVTTVAVS-PGDGKYIAAGSLDRAVRVWDSETGFL-VERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSLD  275 (388)
T ss_dssp             --EECSSCEEEEEEC-STTCCEEEEEETTSCEEEEETTTCCE-EEEEC------CCCSSCEEEEEEC-TTSSEEEEEETT
T ss_pred             --ccccccccccccc-CCCCCeEEEEcCCCeEEEeecccCcc-ceeeccccccccCCCCCEEEEEEC-CCCCEEEEEECC
Confidence              2233444455552 56888999999999999999976322 222222211234578899999999 799999999999


Q ss_pred             ceEEEEeCCCCCC----------CceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeec
Q psy17342        242 GNVYSACRHGNKA----------GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEF  311 (401)
Q Consensus       242 ~~i~~~~~~~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  311 (401)
                      +.|++||+.....          ........|...|.+++|+|+      +++|++|+.||.|++||+++++++.++.+|
T Consensus       276 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H  349 (388)
T d1erja_         276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN------DEYILSGSKDRGVLFWDKKSGNPLLMLQGH  349 (388)
T ss_dssp             SEEEEEEC---------------CEEEEEECCSSCEEEEEECGG------GCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCC------CCEEEEEeCCCEEEEEECCCCcEEEEEeCC
Confidence            9999999864321          223455678999999999998      799999999999999999999999999999


Q ss_pred             CCceEEEEE------CCCCCcEEEEEecCCEEEEEeCC
Q psy17342        312 RDYVMDVQW------SPINPALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       312 ~~~v~~v~~------~~~~~~~l~~~~~d~~i~iwd~~  343 (401)
                      .+.|.++++      +|++. +|++|+.||+|+|||++
T Consensus       350 ~~~V~~~~~~~~~~~spd~~-~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         350 RNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEE
T ss_pred             CCCEEEEEEecCcccCCCCC-EEEEEeCCCEEEEEeee
Confidence            999999975      56776 89999999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.1e-37  Score=264.60  Aligned_cols=298  Identities=12%  Similarity=0.115  Sum_probs=218.2

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE--ecCCCeeEEEEeCCC-CceEEEEecC
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF--FCQSPVLSCCFAKFN-PYLILGGTYS  140 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~-~~~l~~g~~d  140 (401)
                      ....+++++|+|+++.|+.++         +....|+.|+....+......+  ++...|++++|+|+. ..+|++|+.|
T Consensus        16 ~~~~~t~l~~~~~~~~la~~~---------~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~D   86 (325)
T d1pgua1          16 QRNFTTHLSYDPTTNAIAYPC---------GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES   86 (325)
T ss_dssp             CTTCCCCCEEETTTTEEEEEE---------TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETT
T ss_pred             CCCCeEEEEECCCCCEEEEEe---------CCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCC
Confidence            345678999999999999887         1223456666554433333333  235689999999853 3699999999


Q ss_pred             CeEEEEECCCCCCCceeecc--ccccCCCCcEEEEEEeecCCceEEEEEeC--CCcEEEeeccCCCCCcccccccccccc
Q psy17342        141 GQIVLWDTRVQKKTPVHRTP--LSVMAHTHPVFCMSVIGTQNAHNLISISN--DGRLCSWSLEMLSSPQETRDLQYNNKQ  216 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~  216 (401)
                      |+|+|||+............  ..+..|.++|.+++|  ++++.++++++.  ++.+.+|+.+...   ....     ..
T Consensus        87 g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--s~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~-----~~  156 (325)
T d1pgua1          87 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW--DFEGRRLCVVGEGRDNFGVFISWDSGN---SLGE-----VS  156 (325)
T ss_dssp             SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEE--CTTSSEEEEEECCSSCSEEEEETTTCC---EEEE-----CC
T ss_pred             CCEEEeeecCCcceeeeecccccccccccCcEEEEEE--CCCCCccceeeccccceEEEEeecccc---ccee-----ee
Confidence            99999999876543322211  124578999999999  899999888765  6679999987521   1112     34


Q ss_pred             CCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCC-ceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEE
Q psy17342        217 TKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAG-NVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVK  295 (401)
Q Consensus       217 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~  295 (401)
                      +|...|.+++|+|.....+++++.|+.+++|+....+.. .......|...|.+++|+|+.     +.+|++++.|+.|+
T Consensus       157 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~-----~~~l~s~~~d~~i~  231 (325)
T d1pgua1         157 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS-----GEFVITVGSDRKIS  231 (325)
T ss_dssp             SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT-----CCEEEEEETTCCEE
T ss_pred             ecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeecccc-----ceecccccccccee
Confidence            488899999999444445788999999999998643221 122345678889999999975     68999999999999


Q ss_pred             EEEeeCCCceEEEeecCCceEEEEEC---CCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC-Cc
Q psy17342        296 LWNIKENKPVHSFNEFRDYVMDVQWS---PINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN-GT  371 (401)
Q Consensus       296 iwd~~~~~~~~~~~~~~~~v~~v~~~---~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~  371 (401)
                      +||+++++.+..+.+|..++.++.|+   |+++ +|++++.|+.|+|||+++++.+..+... .+...+..+++.+. +.
T Consensus       232 iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  309 (325)
T d1pgua1         232 CFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ-KFATVGADATIRVWDVTTSKCVQKWTLD-KQQLGNQQVGVVATGNG  309 (325)
T ss_dssp             EEETTTCCEEEECCBTTBCCCSCEEEEEESSSS-EEEEEETTSEEEEEETTTTEEEEEEECC-TTCGGGCEEEEEEEETT
T ss_pred             eeeeccccccccccccccccccceeeeeccCCC-EEEEEeCCCeEEEEECCCCCEEEEEEec-CCcccCeEEEEEECCCC
Confidence            99999999999999888777655555   6676 7899999999999999988766554421 22223344444433 34


Q ss_pred             EEEEEecCCcEEEEEe
Q psy17342        372 QLCVGDEKGAITMFDV  387 (401)
Q Consensus       372 ~l~~~~~dg~v~iw~~  387 (401)
                      +|++++.||.|++||+
T Consensus       310 ~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         310 RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEETTSCEEEEET
T ss_pred             EEEEEECCCEEEEEEC
Confidence            7889999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.9e-37  Score=263.64  Aligned_cols=275  Identities=15%  Similarity=0.187  Sum_probs=227.1

Q ss_pred             chhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeE
Q psy17342          2 DWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELL   81 (401)
Q Consensus         2 ~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   81 (401)
                      .|..-+++++||+.||.|+|||+...+.+..+                            ..|...|.+++|+|++..++
T Consensus        24 ~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~----------------------------~~h~~~V~~~~~~~~~~~~~   75 (317)
T d1vyhc1          24 IFHPVFSVMVSASEDATIKVWDYETGDFERTL----------------------------KGHTDSVQDISFDHSGKLLA   75 (317)
T ss_dssp             EECSSSSEEEEEESSSCEEEEETTTCCCCEEE----------------------------CCCSSCEEEEEECTTSSEEE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCCEEEEE----------------------------eCCCCcEEEEeeeccccccc
Confidence            45556789999999999999998765421110                            13668899999999999999


Q ss_pred             EEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccc
Q psy17342         82 LASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPL  161 (401)
Q Consensus        82 ~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~  161 (401)
                      ++.          .++.+.+|+....+... ....+...+.++.|+|++ ..+++++.|+.+++||++++...      .
T Consensus        76 ~~~----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~------~  137 (317)
T d1vyhc1          76 SCS----------ADMTIKLWDFQGFECIR-TMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCV------K  137 (317)
T ss_dssp             EEE----------TTSCCCEEETTSSCEEE-CCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE------E
T ss_pred             ccc----------ccccccccccccccccc-ccccccccceeeeccCCC-ceEEeeccCcceeEeecccceee------e
Confidence            988          78999999987544332 223467899999999977 68889999999999999887643      2


Q ss_pred             cccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccC-----------
Q psy17342        162 SVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQN-----------  230 (401)
Q Consensus       162 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------  230 (401)
                      .+..|...+.+++|  ++++.+|++++.|+.|++|++....   ....     +..+...+.+++++|.           
T Consensus       138 ~~~~~~~~~~~~~~--~~~~~~l~~~~~d~~v~~~~~~~~~---~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~  207 (317)
T d1vyhc1         138 TFTGHREWVRMVRP--NQDGTLIASCSNDQTVRVWVVATKE---CKAE-----LREHRHVVECISWAPESSYSSISEATG  207 (317)
T ss_dssp             EEECCSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCC---EEEE-----ECCCSSCEEEEEECCSCGGGGGGGCCS
T ss_pred             EEccCCCcceeeec--ccCCCEEEEEeCCCeEEEEeeccce---eeEE-----EecCCCCceEEEEeeccccceeecccc
Confidence            34689999999999  8999999999999999999997522   1112     2336667788877732           


Q ss_pred             --------CCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC
Q psy17342        231 --------DVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN  302 (401)
Q Consensus       231 --------~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  302 (401)
                              .+..+++++.|+.|++|+.+.  ..++..+.+|..+|.+++++|+      +++|++|+.||.|++||++++
T Consensus       208 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~------~~~l~s~~~dg~i~iwd~~~~  279 (317)
T d1vyhc1         208 SETKKSGKPGPFLLSGSRDKTIKMWDVST--GMCLMTLVGHDNWVRGVLFHSG------GKFILSCADDKTLRVWDYKNK  279 (317)
T ss_dssp             CC-------CCEEEEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECSS------SSCEEEEETTTEEEEECCTTS
T ss_pred             ceeeeeccCCceeEeccCCCEEEEEECCC--CcEEEEEeCCCCCEEEEEECCC------CCEEEEEECCCeEEEEECCCC
Confidence                    235689999999999999984  4468889999999999999998      799999999999999999999


Q ss_pred             CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEe
Q psy17342        303 KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN  341 (401)
Q Consensus       303 ~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd  341 (401)
                      +++.++.+|...|++++|+|+++ +|++|+.||+|+|||
T Consensus       280 ~~~~~~~~h~~~V~~~~~s~~~~-~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         280 RCMKTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CCCEEEECCSSCEEEEEECSSSS-CEEEEETTSEEEEEC
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEeC
Confidence            99999999999999999999997 789999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-36  Score=261.95  Aligned_cols=312  Identities=15%  Similarity=0.173  Sum_probs=227.0

Q ss_pred             hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH   86 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   86 (401)
                      +++|+||+.||+|+|||....+.+                        ..+    ..|.++|.+++|+|++ .|++++  
T Consensus        23 ~~~l~tgs~Dg~i~vWd~~~~~~~------------------------~~l----~~H~~~V~~l~~s~~~-~l~s~s--   71 (355)
T d1nexb2          23 DNYVITGADDKMIRVYDSINKKFL------------------------LQL----SGHDGGVWALKYAHGG-ILVSGS--   71 (355)
T ss_dssp             TTEEEEEETTTEEEEEETTTTEEE------------------------EEE----ECCSSCEEEEEEETTT-EEEEEE--
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEE------------------------EEE----ECCCCCEEEEEEcCCC-EEEEEe--
Confidence            678999999999999998654411                        111    1477899999999965 788888  


Q ss_pred             cCCCCCCCCCcEEEEEeCcCCCCCceEEEe-cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeec------
Q psy17342         87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRT------  159 (401)
Q Consensus        87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~------  159 (401)
                              .|+.|++|+............. +........+++++ .++++++.|+.|++|++...........      
T Consensus        72 --------~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  142 (355)
T d1nexb2          72 --------TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL  142 (355)
T ss_dssp             --------TTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCE
T ss_pred             --------ccccccccccccccccccccccccccccccccccccc-ceeeeecCCCcEEEEEccCCceeccccccceecc
Confidence                    7999999999865544333222 12234556667755 7899999999999999987543221100      


Q ss_pred             -----------cccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEec
Q psy17342        160 -----------PLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFP  228 (401)
Q Consensus       160 -----------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  228 (401)
                                 ......|...+...    .+++..++++..|+.+++||++...   ....     ...+...+.++.++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~~~~~d~~i~~~d~~~~~---~~~~-----~~~~~~~~~~~~~~  210 (355)
T d1nexb2         143 VFHTPEENPYFVGVLRGHMASVRTV----SGHGNIVVSGSYDNTLIVWDVAQMK---CLYI-----LSGHTDRIYSTIYD  210 (355)
T ss_dssp             EESCTTTCTTEEEEEECCSSCEEEE----EEETTEEEEEETTSCEEEEETTTTE---EEEE-----ECCCSSCEEEEEEE
T ss_pred             ceeccccccceeeeeeecccccccc----ccccceeeeecccceeeeeeccccc---ceee-----eecccccccccccc
Confidence                       00112334444443    3477899999999999999997522   1111     23366678899999


Q ss_pred             cCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEE
Q psy17342        229 QNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSF  308 (401)
Q Consensus       229 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  308 (401)
                       +++..+++++.|+.|++|+...  ...+..+.+|...|.++++++        ++|++++.||.|++||+++...  .+
T Consensus       211 -~~~~~~~~~~~d~~i~i~d~~~--~~~~~~~~~h~~~v~~~~~~~--------~~l~~~~~dg~i~iwd~~~~~~--~~  277 (355)
T d1nexb2         211 -HERKRCISASMDTTIRIWDLEN--GELMYTLQGHTALVGLLRLSD--------KFLVSAAADGSIRGWDANDYSR--KF  277 (355)
T ss_dssp             -TTTTEEEEEETTSCEEEEETTT--CCEEEEECCCSSCCCEEEECS--------SEEEEECTTSEEEEEETTTCCE--EE
T ss_pred             -ccceeeecccccceEEeeeccc--ccccccccccccccccccccc--------ceeeeeecccccccccccccce--ec
Confidence             8899999999999999999984  446788999999999999874        6899999999999999987654  45


Q ss_pred             eecCCceEEEE-ECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342        309 NEFRDYVMDVQ-WSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDV  387 (401)
Q Consensus       309 ~~~~~~v~~v~-~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~  387 (401)
                      ..|...+.++. +++++. ++++| .|+.|++||+++++.+...  ..+|...|++++|+|+ .++++++.||.++||.+
T Consensus       278 ~~~~~~~~~~~~~~~~~~-~l~~g-~d~~i~vwd~~tg~~~~~~--~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         278 SYHHTNLSAITTFYVSDN-ILVSG-SENQFNIYNLRSGKLVHAN--ILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EEECTTCCCCCEEEECSS-EEEEE-ETTEEEEEETTTCCBCCSC--TTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             ccccCCceEEEEEcCCCC-EEEEE-eCCEEEEEECCCCCEEEEE--ecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            56666666654 566664 66655 5899999999998876432  2367788999999987 57888899999877765


Q ss_pred             c
Q psy17342        388 G  388 (401)
Q Consensus       388 ~  388 (401)
                      .
T Consensus       353 d  353 (355)
T d1nexb2         353 D  353 (355)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.1e-36  Score=264.68  Aligned_cols=248  Identities=15%  Similarity=0.137  Sum_probs=201.7

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS  197 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd  197 (401)
                      ..+|+|++|+|++ .+|++|+.||.|+|||..+++....    ..+.+|.++|.+++|  +|++++|++++.|++|++||
T Consensus         7 ~~pIt~~~~s~dg-~~la~~~~~~~i~iw~~~~~~~~~~----~~l~gH~~~V~~l~f--sp~~~~l~s~s~D~~i~vWd   79 (371)
T d1k8kc_           7 VEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQV----HELKEHNGQVTGVDW--APDSNRIVTCGTDRNAYVWT   79 (371)
T ss_dssp             SSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTEEEEE----EEEECCSSCEEEEEE--ETTTTEEEEEETTSCEEEEE
T ss_pred             CCCeEEEEECCCC-CEEEEEeCCCEEEEEECCCCCEEEE----EEecCCCCCEEEEEE--CCCCCEEEEEECCCeEEEEe
Confidence            5789999999987 7899999999999999987653222    235789999999999  89999999999999999999


Q ss_pred             ccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCC--ceeeecCCCCceeeeecCcc
Q psy17342        198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAG--NVECYEGHEGPVVGLSSHRA  275 (401)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~--~~~~~~~~~~~v~~i~~~~~  275 (401)
                      +.... ......     ...+...|.+++|+ |+++.|++|+.|+.+++|+.......  .......|...|.+++|+|+
T Consensus        80 ~~~~~-~~~~~~-----~~~~~~~v~~i~~~-p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  152 (371)
T d1k8kc_          80 LKGRT-WKPTLV-----ILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN  152 (371)
T ss_dssp             EETTE-EEEEEE-----CCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred             ecccc-cccccc-----cccccccccccccc-cccccceeecccCcceeeeeeccccccccccccccccccccccccccc
Confidence            97521 122222     23477899999999 89999999999999999987654322  23345678999999999998


Q ss_pred             CCCCCCCcEEEEEeCCCeEEEEEeeCC------------------CceEEEeecCCceEEEEECCCCCcEEEEEecCCEE
Q psy17342        276 QGHIDFSHLYLTSSYDWSVKLWNIKEN------------------KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRV  337 (401)
Q Consensus       276 ~~~~~~~~~l~s~~~d~~i~iwd~~~~------------------~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i  337 (401)
                            +.+|++|+.|+.|++||....                  +.+.....|...|.+++|+|+++ +|++++.|+.|
T Consensus       153 ------~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~d~~i  225 (371)
T d1k8kc_         153 ------SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTV  225 (371)
T ss_dssp             ------SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEETTTEE
T ss_pred             ------ccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccc-cccccccCCcc
Confidence                  799999999999999998643                  23455567889999999999997 78999999999


Q ss_pred             EEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        338 DLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       338 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      ++||+.++..+..+   ..|..+|.+++|+|++++|++|. |+.+++|.....
T Consensus       226 ~iwd~~~~~~~~~~---~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~  274 (371)
T d1k8kc_         226 CLADADKKMAVATL---ASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSA  274 (371)
T ss_dssp             EEEEGGGTTEEEEE---ECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETT
T ss_pred             eEEeeecccceeee---ecccccceeeeecCCCCEEEEEc-CCceEEEEeeCC
Confidence            99999987654443   46778899999999998887665 777888777654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.5e-34  Score=243.92  Aligned_cols=253  Identities=12%  Similarity=0.131  Sum_probs=198.2

Q ss_pred             eEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC
Q psy17342        112 EFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG  191 (401)
Q Consensus       112 ~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg  191 (401)
                      +...+|.++|++++|+|++ ++|++|+.||.|++||+++++....     ....|...|.+++|  ++++. +++++.|+
T Consensus         6 ~~~~GH~~~V~~l~~s~dg-~~l~s~s~Dg~v~vWd~~~~~~~~~-----~~~~h~~~v~~v~~--~~~g~-~~~~~~d~   76 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRV-----FPDVHATMITGIKT--TSKGD-LFTVSWDD   76 (299)
T ss_dssp             EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEC-----SSCSCSSCEEEEEE--CTTSC-EEEEETTT
T ss_pred             eEcCCCCCCcEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEE-----EcCCCCCcEEEEEe--eccce-eeccccee
Confidence            3456789999999999987 7899999999999999988764321     12579999999999  88875 56777899


Q ss_pred             cEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeee
Q psy17342        192 RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLS  271 (401)
Q Consensus       192 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~  271 (401)
                      .+++|+............     ...+...+.+++++ +++..+++++ ++.+++|+...    .....  ....+.+++
T Consensus        77 ~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~s-~~g~~~~~~~-~~~i~~~~~~~----~~~~~--~~~~~~~~~  143 (299)
T d1nr0a2          77 HLKVVPAGGSGVDSSKAV-----ANKLSSQPLGLAVS-ADGDIAVAAC-YKHIAIYSHGK----LTEVP--ISYNSSCVA  143 (299)
T ss_dssp             EEEEECSSSSSSCTTSCC-----EEECSSCEEEEEEC-TTSSCEEEEE-SSEEEEEETTE----EEEEE--CSSCEEEEE
T ss_pred             eEEEeccCCccccccccc-----cccccccccccccc-cccccccccc-ccccccccccc----ccccc--ccccccccc
Confidence            999999864221111111     12356678999999 7887776665 56899998541    12222  345678899


Q ss_pred             cCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceE-EEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcc
Q psy17342        272 SHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVH-SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA  350 (401)
Q Consensus       272 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  350 (401)
                      ++|+      +++|++|+.|+.|++||+++++... ....|...|.+++|+|++. ++++++.|+.|++||+.++.....
T Consensus       144 ~s~~------~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~  216 (299)
T d1nr0a2         144 LSND------KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA-FLVATDQSRKVIPYSVANNFELAH  216 (299)
T ss_dssp             ECTT------SCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEEGGGTTEESC
T ss_pred             cccc------ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence            9998      7999999999999999998876544 3456889999999999997 789999999999999988765544


Q ss_pred             eEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccc
Q psy17342        351 TSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIA  393 (401)
Q Consensus       351 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~  393 (401)
                      ......|...|++++|+|++++|++|+.||.|++||++++...
T Consensus       217 ~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~  259 (299)
T d1nr0a2         217 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH  259 (299)
T ss_dssp             CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred             cccccccccccccccccccccceEEEcCCCEEEEEECCCCCcc
Confidence            4434467789999999999999999999999999999887533

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-34  Score=251.19  Aligned_cols=277  Identities=14%  Similarity=0.207  Sum_probs=219.3

Q ss_pred             CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCe
Q psy17342          1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL   80 (401)
Q Consensus         1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   80 (401)
                      |.|..-+.++|||+.||.|+|||......+                        ..+    ..|...|.+++|+|++.++
T Consensus        61 l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~------------------------~~~----~~~~~~v~~v~~~~~~~~l  112 (340)
T d1tbga_          61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKV------------------------HAI----PLRSSWVMTCAYAPSGNYV  112 (340)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETTTTEEE------------------------EEE----ECSCSCEEEEEECTTSSEE
T ss_pred             EEECCCCCEEEEEECCCceeeeecccceeE------------------------EEE----ecccccEEeeEeeccceee
Confidence            356777889999999999999998655411                        001    1356889999999999999


Q ss_pred             EEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE--E-ecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCcee
Q psy17342         81 LLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE--F-FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVH  157 (401)
Q Consensus        81 ~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~--~-~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~  157 (401)
                      ++++          .|+.+.+|+...........  + .|..........+ + ..+.....+.....+........   
T Consensus       113 ~~~~----------~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~---  177 (340)
T d1tbga_         113 ACGG----------LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-D-NQIVTSSGDTTCALWDIETGQQT---  177 (340)
T ss_dssp             EEEE----------TTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-T-TEEEEEETTTEEEEEETTTTEEE---
T ss_pred             eeec----------ccceeecccccccccccccceeccccccccccccccc-c-ccccccccccccccccccccccc---
Confidence            9999          79999999987644433322  2 2444555555544 3 46667778899999988765432   


Q ss_pred             eccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEE
Q psy17342        158 RTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVV  237 (401)
Q Consensus       158 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  237 (401)
                         .....+...+....+  .+...++++++.|+.|++||++..   .....     +.+|...|++++|+ |++++|++
T Consensus       178 ---~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~v~i~d~~~~---~~~~~-----~~~h~~~i~~v~~~-p~~~~l~s  243 (340)
T d1tbga_         178 ---TTFTGHTGDVMSLSL--APDTRLFVSGACDASAKLWDVREG---MCRQT-----FTGHESDINAICFF-PNGNAFAT  243 (340)
T ss_dssp             ---EEEECCSSCEEEEEE--CTTSSEEEEEETTTEEEEEETTTT---EEEEE-----ECCCSSCEEEEEEC-TTSSEEEE
T ss_pred             ---ccccccceeEeeecc--ccccceeEEeecCceEEEEECCCC---cEEEE-----EeCCCCCeEEEEEC-CCCCEEEE
Confidence               223567778888888  889999999999999999999752   22222     33488899999999 79999999


Q ss_pred             EcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEE
Q psy17342        238 GCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMD  317 (401)
Q Consensus       238 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  317 (401)
                      |+.|+.|++|+.+............+...|.+++|+|+      +++|++|+.||.|++||+.+++++.++.+|..+|++
T Consensus       244 ~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~  317 (340)
T d1tbga_         244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS------GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC  317 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSS------SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             EeCCCeEEEEeecccccccccccccccCceEEEEECCC------CCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence            99999999999985443222334467788999999998      799999999999999999999999999999999999


Q ss_pred             EEECCCCCcEEEEEecCCEEEEEe
Q psy17342        318 VQWSPINPALFATVEVAGRVDLWN  341 (401)
Q Consensus       318 v~~~~~~~~~l~~~~~d~~i~iwd  341 (401)
                      ++|+|+++ +|++|+.||.|+|||
T Consensus       318 l~~s~d~~-~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         318 LGVTDDGM-AVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECTTSS-CEEEEETTSCEEEEC
T ss_pred             EEEeCCCC-EEEEEccCCEEEEeC
Confidence            99999997 789999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-34  Score=245.49  Aligned_cols=305  Identities=18%  Similarity=0.260  Sum_probs=228.3

Q ss_pred             hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH   86 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   86 (401)
                      +++||||+.||.|+|||....+.+.                        .+    ..|...|.+++|+|+  .|++++  
T Consensus        27 g~~l~sgs~Dg~i~vWd~~~~~~~~------------------------~~----~~h~~~V~~v~~~~~--~l~s~s--   74 (342)
T d2ovrb2          27 GNRIVSGSDDNTLKVWSAVTGKCLR------------------------TL----VGHTGGVWSSQMRDN--IIISGS--   74 (342)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEE------------------------EC----CCCSSCEEEEEEETT--EEEEEE--
T ss_pred             CCEEEEEeCCCeEEEEECCCCCEEE------------------------EE----eCCCCCEEEEEeCCC--ccccce--
Confidence            6789999999999999986554110                        11    146789999999985  788888  


Q ss_pred             cCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCC
Q psy17342         87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH  166 (401)
Q Consensus        87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  166 (401)
                              .|+.+++|+........ ....+...+......+   ..+..+..|+.+.+|+..+......      +..+
T Consensus        75 --------~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~d~~i~~~~~~~~~~~~~------~~~~  136 (342)
T d2ovrb2          75 --------TDRTLKVWNAETGECIH-TLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHV------LMGH  136 (342)
T ss_dssp             --------TTSCEEEEETTTTEEEE-EECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEE------EECC
T ss_pred             --------eccccccccccccccee-cccccceeEeeeeccc---ccccccccceeEEEeecccccceee------eecc
Confidence                    79999999998543322 2222344555555443   5677788999999999988764322      1222


Q ss_pred             CCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEE
Q psy17342        167 THPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYS  246 (401)
Q Consensus       167 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~  246 (401)
                      .......    ......+++++.|+.+++||.+...   ....     ..+|...+..+.   .++..+++|+.||.|++
T Consensus       137 ~~~~~~~----~~~~~~~~~~~~d~~i~~~d~~~~~---~~~~-----~~~~~~~~~~~~---~~~~~l~s~~~dg~i~~  201 (342)
T d2ovrb2         137 VAAVRCV----QYDGRRVVSGAYDFMVKVWDPETET---CLHT-----LQGHTNRVYSLQ---FDGIHVVSGSLDTSIRV  201 (342)
T ss_dssp             SSCEEEE----EECSSCEEEEETTSCEEEEEGGGTE---EEEE-----ECCCSSCEEEEE---ECSSEEEEEETTSCEEE
T ss_pred             cccceee----ccccceeeeecCCCeEEEeecccce---eeEE-----EcCccccccccc---CCCCEEEEEeCCCeEEE
Confidence            2222222    3466789999999999999987521   1112     233555555555   45789999999999999


Q ss_pred             EeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee---cCCceEEEEECCC
Q psy17342        247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE---FRDYVMDVQWSPI  323 (401)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~v~~~~~  323 (401)
                      ||++.  .+.+..+.+|...+.+++++        +++|++++.|+.|++||+...+....+..   |...+.++.++++
T Consensus       202 ~d~~~--~~~~~~~~~~~~~v~~~~~~--------~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (342)
T d2ovrb2         202 WDVET--GNCIHTLTGHQSLTSGMELK--------DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN  271 (342)
T ss_dssp             EETTT--CCEEEEECCCCSCEEEEEEE--------TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSS
T ss_pred             eeccc--ceeeeEecccccceeEEecC--------CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCC
Confidence            99984  44678889999999988876        46999999999999999998888777765   5567777777653


Q ss_pred             CCcEEEEEecCCEEEEEeCCCCCCCcceEEe--ecCCCCeEEEEecCCCcEEEEEecCCc----EEEEEecc
Q psy17342        324 NPALFATVEVAGRVDLWNLNLDTEVPATSAI--VEGAPALSRVTWTPNGTQLCVGDEKGA----ITMFDVGE  389 (401)
Q Consensus       324 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~dg~----v~iw~~~~  389 (401)
                         ++++++.||.|++||+++++.+..+...  .+|...|++++|+|++.+|++|+.||+    |++||+..
T Consensus       272 ---~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         272 ---FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ---EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             ---eeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence               7899999999999999998876655432  235678999999999999999999986    99999864

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.5e-35  Score=252.84  Aligned_cols=288  Identities=15%  Similarity=0.187  Sum_probs=213.4

Q ss_pred             ccccce-EEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC
Q psy17342         63 SKNRNV-TYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG  141 (401)
Q Consensus        63 ~~~~~v-~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg  141 (401)
                      +|.+.| +|++|  ++++|++|+          .|++|+|||+.+++.+..+ ..|.++|++++|+|+  .+|++|+.|+
T Consensus        10 GH~~~vitc~~~--~~~~l~tgs----------~Dg~i~vWd~~~~~~~~~l-~~H~~~V~~l~~s~~--~~l~s~s~D~   74 (355)
T d1nexb2          10 GHMTSVITCLQF--EDNYVITGA----------DDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHG--GILVSGSTDR   74 (355)
T ss_dssp             CCSSSCEEEEEE--ETTEEEEEE----------TTTEEEEEETTTTEEEEEE-ECCSSCEEEEEEETT--TEEEEEETTC
T ss_pred             CcCCCcEEEEEE--CCCEEEEEe----------CCCeEEEEECCCCcEEEEE-ECCCCCEEEEEEcCC--CEEEEEeccc
Confidence            476765 66665  577999999          7999999999987766544 357899999999984  4789999999


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccccccc---------
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQY---------  212 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~---------  212 (401)
                      .|++|+...........    ...+........+  .+++..+++++.|+.|++||++.............         
T Consensus        75 ~i~iw~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  148 (355)
T d1nexb2          75 TVRVWDIKKGCCTHVFE----GHNSTVRCLDIVE--YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE  148 (355)
T ss_dssp             CEEEEETTTTEEEEEEC----CCSSCEEEEEEEE--ETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTT
T ss_pred             ccccccccccccccccc----ccccccccccccc--ccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccc
Confidence            99999998766432211    1233333444444  78999999999999999999875322111100000         


Q ss_pred             ------ccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEE
Q psy17342        213 ------NNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYL  286 (401)
Q Consensus       213 ------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~  286 (401)
                            .....+...+....   ++++.++.+..|+.|++||...  .+.+....++...+.++.++|.      +.+++
T Consensus       149 ~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~------~~~~~  217 (355)
T d1nexb2         149 ENPYFVGVLRGHMASVRTVS---GHGNIVVSGSYDNTLIVWDVAQ--MKCLYILSGHTDRIYSTIYDHE------RKRCI  217 (355)
T ss_dssp             TCTTEEEEEECCSSCEEEEE---EETTEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEETT------TTEEE
T ss_pred             cccceeeeeeeccccccccc---cccceeeeecccceeeeeeccc--ccceeeeecccccccccccccc------ceeee
Confidence                  00111222333332   5678999999999999999974  3456778888999999999998      78999


Q ss_pred             EEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEE-EE
Q psy17342        287 TSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSR-VT  365 (401)
Q Consensus       287 s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~  365 (401)
                      +++.|+.|++||++++.++..+.+|...|.+++++++   +|++++.||.|++||+++...  .+.   .|...+.. ..
T Consensus       218 ~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~--~~~---~~~~~~~~~~~  289 (355)
T d1nexb2         218 SASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK---FLVSAAADGSIRGWDANDYSR--KFS---YHHTNLSAITT  289 (355)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECSS---EEEEECTTSEEEEEETTTCCE--EEE---EECTTCCCCCE
T ss_pred             cccccceEEeeeccccccccccccccccccccccccc---eeeeeecccccccccccccce--ecc---cccCCceEEEE
Confidence            9999999999999999999999999999999999863   789999999999999987653  222   23334444 45


Q ss_pred             ecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        366 WTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       366 ~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      +++++++|++| .||.|++||+++++
T Consensus       290 ~~~~~~~l~~g-~d~~i~vwd~~tg~  314 (355)
T d1nexb2         290 FYVSDNILVSG-SENQFNIYNLRSGK  314 (355)
T ss_dssp             EEECSSEEEEE-ETTEEEEEETTTCC
T ss_pred             EcCCCCEEEEE-eCCEEEEEECCCCC
Confidence            67777777665 58999999999984

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-34  Score=249.77  Aligned_cols=297  Identities=14%  Similarity=0.139  Sum_probs=216.0

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceE--EEecCCCeeEEEEeCCCCceEEEEecC
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEF--EFFCQSPVLSCCFAKFNPYLILGGTYS  140 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~g~~d  140 (401)
                      .|++.|++|+|+|++++||+++          .|++|+|||+.++.....+  ...|..+|++++|+|++..+|++|+.|
T Consensus         9 ~h~d~I~~l~fsp~~~~L~s~s----------~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d   78 (342)
T d1yfqa_           9 APKDYISDIKIIPSKSLLLITS----------WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ   78 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEE----------TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT
T ss_pred             CCCCCEEEEEEeCCCCEEEEEE----------CCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc
Confidence            6889999999999999999999          7999999999865543333  345899999999999877899999999


Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      |.|++|++.........     ...+........+  .++...+++++.++.+++||++.............  ......
T Consensus        79 ~~v~~w~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~--~~~~~~  149 (342)
T d1yfqa_          79 GEILKVDLIGSPSFQAL-----TNNEANLGICRIC--KYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN--SNNTKV  149 (342)
T ss_dssp             SCEEEECSSSSSSEEEC-----BSCCCCSCEEEEE--EETTTEEEEEETTSEEEEECHHHHTTBCEEEEESC--SSSSSS
T ss_pred             cceeeeecccccccccc-----ccccccccccccc--ccccccccccccccccceeeccccccceeeecccc--cccccc
Confidence            99999999877653221     1223333334444  56778999999999999999875322221111111  111222


Q ss_pred             ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCc-eeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEe
Q psy17342        221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGN-VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNI  299 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  299 (401)
                      ....+.+. +....+++++.|+.|++|++....... ......+...+.+..+.|..     +..+++++.||.+.+|+.
T Consensus       150 ~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~~v~~~  223 (342)
T d1yfqa_         150 KNKIFTMD-TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE-----QEGYACSSIDGRVAVEFF  223 (342)
T ss_dssp             CCCEEEEE-ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG-----GCEEEEEETTSEEEEEEC
T ss_pred             eeeeeeee-ccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCC-----CCEEEeecCCCeEEEEEe
Confidence            33444555 678899999999999999987544322 22333455566676766654     689999999999999998


Q ss_pred             eCCCc------eEE---------EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEE
Q psy17342        300 KENKP------VHS---------FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRV  364 (401)
Q Consensus       300 ~~~~~------~~~---------~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  364 (401)
                      .....      ...         ...|...+++++|+|+++ +|++|+.||.|++||+++++.+..+    .+......+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~lasg~~Dg~v~vWD~~~~~~l~~~----~~~~~~~~~  298 (342)
T d1yfqa_         224 DDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTRKKIKNF----AKFNEDSVV  298 (342)
T ss_dssp             CTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEEC----CCCSSSEEE
T ss_pred             cCCcceeeccccceeeeeeeccCCCcccccceeEEecCCcc-EEEEECCCCEEEEEECCCCcEEEEe----cCCCCCEEE
Confidence            65321      111         123566799999999997 7999999999999999987654332    334456678


Q ss_pred             EecCCCcEEEEEecCCcEEEEEecc
Q psy17342        365 TWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       365 ~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      +|+|+|++|++++.|+.+++|....
T Consensus       299 ~~s~~~~~l~~a~sdd~~~~~~~~~  323 (342)
T d1yfqa_         299 KIACSDNILCLATSDDTFKTNAAID  323 (342)
T ss_dssp             EEEECSSEEEEEEECTHHHHCSSSC
T ss_pred             EEEeCCCEEEEEEcCCcEEEeeeeC
Confidence            8999999999999998888886644

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5e-34  Score=245.79  Aligned_cols=245  Identities=14%  Similarity=0.189  Sum_probs=188.5

Q ss_pred             ccceEEEEecC--CCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEE-------ecCCCeeEEEEeCCCCceEE
Q psy17342         65 NRNVTYMDWST--QHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEF-------FCQSPVLSCCFAKFNPYLIL  135 (401)
Q Consensus        65 ~~~v~~~~~~~--~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~  135 (401)
                      ...|++++|+|  ++.+|++++          .||+|+|||+..++.......       .+.++|.+++|++++..+++
T Consensus        63 ~~~v~~v~fsP~~~g~~lasgs----------~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  132 (325)
T d1pgua1          63 SSVVTTVKFSPIKGSQYLCSGD----------ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  132 (325)
T ss_dssp             TSCEEEEEECSSTTCCEEEEEE----------TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             CCCEEEEEEeeCCCCCEEEEEe----------CCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccce
Confidence            46799999998  566888888          799999999986554443332       25789999999998854443


Q ss_pred             EE-ecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceE-EEEEeCCCcEEEeeccCCCCCccccccccc
Q psy17342        136 GG-TYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHN-LISISNDGRLCSWSLEMLSSPQETRDLQYN  213 (401)
Q Consensus       136 ~g-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~  213 (401)
                      ++ +.++.+.+|+.++++..      ..+.+|...|.+++|  ++++.. +++++.|+.+++||............    
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~------~~~~~h~~~v~~~~~--~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~----  200 (325)
T d1pgua1         133 VGEGRDNFGVFISWDSGNSL------GEVSGHSQRINACHL--KQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT----  200 (325)
T ss_dssp             EECCSSCSEEEEETTTCCEE------EECCSCSSCEEEEEE--CSSSSCEEEEEETTTEEEEEETTTBEEEEEECS----
T ss_pred             eeccccceEEEEeecccccc------eeeeecccccccccc--cccccceEEEeecccccccccccccccceeccc----
Confidence            33 34678999999876643      234689999999999  777764 77899999999999865222211111    


Q ss_pred             cccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecC---ccCCCCCCCcEEEEEeC
Q psy17342        214 NKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSH---RAQGHIDFSHLYLTSSY  290 (401)
Q Consensus       214 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~---~~~~~~~~~~~l~s~~~  290 (401)
                       ...+...|.+++|+|..+.++++++.|+.|++||.+.  .+.+..+.+|..++.++.|+   |+      +.+|++++.
T Consensus       201 -~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~--~~~~~~l~~~~~~v~~~~~s~~~~d------g~~l~s~s~  271 (325)
T d1pgua1         201 -HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS--GEFLKYIEDDQEPVQGGIFALSWLD------SQKFATVGA  271 (325)
T ss_dssp             -SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT--CCEEEECCBTTBCCCSCEEEEEESS------SSEEEEEET
T ss_pred             -ccCCCCccEEeeeccccceeccccccccceeeeeecc--ccccccccccccccccceeeeeccC------CCEEEEEeC
Confidence             3347788999999955678899999999999999874  44678888898888777766   44      689999999


Q ss_pred             CCeEEEEEeeCCCceEEEeecCCc--eE--EEEECCCCCcEEEEEecCCEEEEEeC
Q psy17342        291 DWSVKLWNIKENKPVHSFNEFRDY--VM--DVQWSPINPALFATVEVAGRVDLWNL  342 (401)
Q Consensus       291 d~~i~iwd~~~~~~~~~~~~~~~~--v~--~v~~~~~~~~~l~~~~~d~~i~iwd~  342 (401)
                      |+.|+|||+++++++..+..|...  +.  ++.+.+++  ++++++.||.|++||+
T Consensus       272 D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         272 DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG--RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETT--EEEEEETTSCEEEEET
T ss_pred             CCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCC--EEEEEECCCEEEEEEC
Confidence            999999999999999988775543  33  44444443  6889999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-32  Score=233.07  Aligned_cols=275  Identities=16%  Similarity=0.274  Sum_probs=212.7

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      .|...|+|++|  ++++||+|+          .||+|+|||+++++.+..+ ..|.+.|++++|.  + ++|++|+.|+.
T Consensus        13 ~~~~~V~c~~~--d~~~l~sgs----------~Dg~i~vWd~~~~~~~~~l-~~H~~~V~~v~~~--~-~~l~s~s~D~~   76 (293)
T d1p22a2          13 ETSKGVYCLQY--DDQKIVSGL----------RDNTIKIWDKNTLECKRIL-TGHTGSVLCLQYD--E-RVIITGSSDST   76 (293)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEE----------SSSCEEEEESSSCCEEEEE-CCCSSCEEEEECC--S-SEEEEEETTSC
T ss_pred             CCCCCEEEEEE--cCCEEEEEe----------CCCeEEEEECCCCcEEEEE-ecCCCCEeeeecc--c-ceeeccccccc
Confidence            46688998765  688999999          7999999999987766544 3478999999884  3 68999999999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      |++|++..+.....      ...+.....  .+  ......++++..++.+.+|+............     ...+...+
T Consensus        77 i~~~~~~~~~~~~~------~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v  141 (293)
T d1p22a2          77 VRVWDVNTGEMLNT------LIHHCEAVL--HL--RFNNGMMVTCSKDRSIAVWDMASPTDITLRRV-----LVGHRAAV  141 (293)
T ss_dssp             EEEEESSSCCEEEE------ECCCCSCEE--EE--ECCTTEEEEEETTSCEEEEECSSSSCCEEEEE-----ECCCSSCE
T ss_pred             cccccccccccccc------ccccccccc--cc--cccccceeecccccceeEeecccccccccccc-----cccccccc
Confidence            99999988764322      122222222  23  45666899999999999999876443333322     23367778


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN  302 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  302 (401)
                      ..+.+.   ...+++++.|+.|++||.+.  .+.+..+.++...+..+.++        +..+++++.|+.|++||+++.
T Consensus       142 ~~~~~~---~~~~~~~s~d~~i~~~d~~~--~~~~~~~~~~~~~v~~~~~~--------~~~l~~~~~dg~i~i~d~~~~  208 (293)
T d1p22a2         142 NVVDFD---DKYIVSASGDRTIKVWNTST--CEFVRTLNGHKRGIACLQYR--------DRLVVSGSSDNTIRLWDIECG  208 (293)
T ss_dssp             EEEEEE---TTEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEEE--------TTEEEEEETTSCEEEEETTTC
T ss_pred             ccceec---ccccccccCCCceeeecCCC--CcEEEEEcccccccccccCC--------CCeEEEecCCCEEEEEecccc
Confidence            877765   46788999999999999984  44678888899988888776        468999999999999999999


Q ss_pred             CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCC------cceEEeecCCCCeEEEEecCCCcEEEEE
Q psy17342        303 KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV------PATSAIVEGAPALSRVTWTPNGTQLCVG  376 (401)
Q Consensus       303 ~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------~~~~~~~~~~~~v~~~~~s~~g~~l~~~  376 (401)
                      +.+..+..|...+..+  ++++. +|++++.||.|++||+......      .......+|...|++++|  ++++|++|
T Consensus       209 ~~~~~~~~~~~~v~~~--~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~  283 (293)
T d1p22a2         209 ACLRVLEGHEELVRCI--RFDNK-RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSS  283 (293)
T ss_dssp             CEEEEECCCSSCEEEE--ECCSS-EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEEC
T ss_pred             eeeeeecccceeeeec--cccce-EEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEE
Confidence            9999999888888764  45555 7899999999999998653321      223334567889999998  56789999


Q ss_pred             ecCCcEEEEE
Q psy17342        377 DEKGAITMFD  386 (401)
Q Consensus       377 ~~dg~v~iw~  386 (401)
                      +.||+|++||
T Consensus       284 s~Dg~i~iWD  293 (293)
T d1p22a2         284 SHDDTILIWD  293 (293)
T ss_dssp             CSSSEEEEEC
T ss_pred             ecCCEEEEeC
Confidence            9999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-33  Score=246.97  Aligned_cols=269  Identities=12%  Similarity=0.220  Sum_probs=189.8

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCC----ce-EEEecCCCeeEEEE------eCCCC
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTT----PE-FEFFCQSPVLSCCF------AKFNP  131 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~----~~-~~~~~~~~v~~~~~------~~~~~  131 (401)
                      .|...|.++++++  +++++++          .|++|+|||..+.+..    .. ....+...+..+..      ++...
T Consensus        12 ~H~~~I~~v~~~~--~~l~S~S----------~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (393)
T d1sq9a_          12 AHDADIFSVSACN--SFTVSCS----------GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL   79 (393)
T ss_dssp             CSSSCEEEEEECS--SEEEEEE----------TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred             cccCccEEEEEeC--CEEEEEE----------CCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCC
Confidence            6889999999875  5899999          8999999998754321    11 11223333333322      12122


Q ss_pred             ceEEEEecCCeEEEEECCCCCCCcee----eccccccCCCCcEEEEEEeecC---CceEEEEEeCCCcEEEeeccCCCCC
Q psy17342        132 YLILGGTYSGQIVLWDTRVQKKTPVH----RTPLSVMAHTHPVFCMSVIGTQ---NAHNLISISNDGRLCSWSLEMLSSP  204 (401)
Q Consensus       132 ~~l~~g~~dg~v~iw~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~~~l~s~~~dg~i~~wd~~~~~~~  204 (401)
                      .++++++.||.|++|++.........    ...+....+...+..++|....   .+.++++++.||.+++|++......
T Consensus        80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~  159 (393)
T d1sq9a_          80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  159 (393)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             cEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcc
Confidence            47889999999999998765432211    1112234566778888884322   2578999999999999998643211


Q ss_pred             cccccc----------ccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCC----CceeeecCCCCceeee
Q psy17342        205 QETRDL----------QYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKA----GNVECYEGHEGPVVGL  270 (401)
Q Consensus       205 ~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~----~~~~~~~~~~~~v~~i  270 (401)
                      ......          .......+...+.+++|+ +++ +|++|+.|+.|++||+...+.    +....+.+|..+|+++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s-~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l  237 (393)
T d1sq9a_         160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV  237 (393)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred             cceeeeeeccceecccceecccCCCCcEEEEEEC-CCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEc
Confidence            111100          000123355668899999 665 899999999999999975331    1123455799999999


Q ss_pred             ecCccCCCCCCCcEEEEEeCCC---eEEEEEeeCCCceEEEe-------------ecCCceEEEEECCCCCcEEEEEecC
Q psy17342        271 SSHRAQGHIDFSHLYLTSSYDW---SVKLWNIKENKPVHSFN-------------EFRDYVMDVQWSPINPALFATVEVA  334 (401)
Q Consensus       271 ~~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~-------------~~~~~v~~v~~~~~~~~~l~~~~~d  334 (401)
                      +|+|+      +++|++|+.|+   .|++||+++++++..+.             +|...|++++|+|+++ +|++++.|
T Consensus       238 ~~spd------g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~D  310 (393)
T d1sq9a_         238 KFSPQ------GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWD  310 (393)
T ss_dssp             EECSS------TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETT
T ss_pred             ccccc------cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC-eeEEECCC
Confidence            99998      79999999887   49999999988877764             6999999999999997 89999999


Q ss_pred             CEEEEEeCCCCCCCcceE
Q psy17342        335 GRVDLWNLNLDTEVPATS  352 (401)
Q Consensus       335 ~~i~iwd~~~~~~~~~~~  352 (401)
                      ++|++||+++++.+..+.
T Consensus       311 ~~v~vWd~~~g~~~~~l~  328 (393)
T d1sq9a_         311 GKLRFWDVKTKERITTLN  328 (393)
T ss_dssp             SEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEC
Confidence            999999999987665553

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-32  Score=237.89  Aligned_cols=283  Identities=16%  Similarity=0.257  Sum_probs=214.7

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      +|.+.|.+ +++++|++||+|+          .|++|+|||+.+++.+..+ ..|...|.+++|+|   .+|++|+.|+.
T Consensus        14 GH~~~V~s-~~~~~g~~l~sgs----------~Dg~i~vWd~~~~~~~~~~-~~h~~~V~~v~~~~---~~l~s~s~D~~   78 (342)
T d2ovrb2          14 GHDDHVIT-CLQFCGNRIVSGS----------DDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRD---NIIISGSTDRT   78 (342)
T ss_dssp             CSTTSCEE-EEEEETTEEEEEE----------TTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEET---TEEEEEETTSC
T ss_pred             CcCCceEE-EEEECCCEEEEEe----------CCCeEEEEECCCCCEEEEE-eCCCCCEEEEEeCC---Cccccceeccc
Confidence            57788865 4666788999999          7999999999987765443 34789999999986   48999999999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      +++|+........      ....+...+.....    ....++.+..|+.+.+|+......   ...+..     .....
T Consensus        79 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~----~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~-----~~~~~  140 (342)
T d2ovrb2          79 LKVWNAETGECIH------TLYGHTSTVRCMHL----HEKRVVSGSRDATLRVWDIETGQC---LHVLMG-----HVAAV  140 (342)
T ss_dssp             EEEEETTTTEEEE------EECCCSSCEEEEEE----ETTEEEEEETTSEEEEEESSSCCE---EEEEEC-----CSSCE
T ss_pred             cccccccccccee------cccccceeEeeeec----ccccccccccceeEEEeecccccc---eeeeec-----ccccc
Confidence            9999998765432      12345555655544    445678889999999999875321   111111     11112


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCC
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKEN  302 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  302 (401)
                      .  ... .....++.++.++.|++|+...  ...+..+.+|...+..+.+.        +.++++++.|+.|++||++.+
T Consensus       141 ~--~~~-~~~~~~~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~--------~~~l~s~~~dg~i~~~d~~~~  207 (342)
T d2ovrb2         141 R--CVQ-YDGRRVVSGAYDFMVKVWDPET--ETCLHTLQGHTNRVYSLQFD--------GIHVVSGSLDTSIRVWDVETG  207 (342)
T ss_dssp             E--EEE-ECSSCEEEEETTSCEEEEEGGG--TEEEEEECCCSSCEEEEEEC--------SSEEEEEETTSCEEEEETTTC
T ss_pred             e--eec-cccceeeeecCCCeEEEeeccc--ceeeEEEcCcccccccccCC--------CCEEEEEeCCCeEEEeecccc
Confidence            2  222 4567899999999999999874  34677888888877776654        578999999999999999999


Q ss_pred             CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcE
Q psy17342        303 KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAI  382 (401)
Q Consensus       303 ~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v  382 (401)
                      +++..+..|...+.+++++++   +|++++.|+.|++||+...+....+.....|...+.++.+  +++++++|+.||.|
T Consensus       208 ~~~~~~~~~~~~v~~~~~~~~---~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i  282 (342)
T d2ovrb2         208 NCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTV  282 (342)
T ss_dssp             CEEEEECCCCSCEEEEEEETT---EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEE
T ss_pred             eeeeEecccccceeEEecCCC---EEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEE
Confidence            999999999999999888763   7899999999999999987655444333344556666666  56799999999999


Q ss_pred             EEEEeccCccceeeee
Q psy17342        383 TMFDVGEVGIACLKFI  398 (401)
Q Consensus       383 ~iw~~~~~~~~~l~~~  398 (401)
                      ++||++++  ++++.+
T Consensus       283 ~iwd~~tg--~~i~~~  296 (342)
T d2ovrb2         283 KLWDLKTG--EFIRNL  296 (342)
T ss_dssp             EEEETTTC--CEEEEE
T ss_pred             EEEECCCC--CEEEEE
Confidence            99999998  445444

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.4e-33  Score=234.23  Aligned_cols=265  Identities=12%  Similarity=0.115  Sum_probs=199.9

Q ss_pred             ccccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe
Q psy17342         63 SKNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        63 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      +|.++|++++|+|    |++|+          .||+|++||+.++.      ..|...|.++++++.  ..+++++.|++
T Consensus        11 gH~~~I~~l~~s~----l~sgs----------~Dg~v~~Wd~~~~~------~~h~~~V~~~~~~~~--~~~~s~s~D~~   68 (287)
T d1pgua2          11 GHNKGITALTVNP----LISGS----------YDGRIMEWSSSSMH------QDHSNLIVSLDNSKA--QEYSSISWDDT   68 (287)
T ss_dssp             CCSSCEEEEETTT----TEEEE----------TTSCEEETTTTEEE------CCCCSCEEEEECCST--TCCEEEETTTE
T ss_pred             CCCCceEEEEECc----EEEEe----------CCCeEEEEECCCCC------CCCCCCEEEEEecCC--CeEEEEeeccc
Confidence            6889999999987    89999          89999999987532      357889999999874  35788889999


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      +++|++...+             ....+..+++  .+++..++++ .++.+.+|+..... ......        ....+
T Consensus        69 v~~w~~~~~~-------------~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~--------~~~~~  123 (287)
T d1pgua2          69 LKVNGITKHE-------------FGSQPKVASA--NNDGFTAVLT-NDDDLLILQSFTGD-IIKSVR--------LNSPG  123 (287)
T ss_dssp             EEETTEEEEE-------------CSSCEEEEEE--CSSSEEEEEE-TTSEEEEEETTTCC-EEEEEE--------CSSCE
T ss_pred             cccccccccc-------------cccceeeeee--ccCCceEEEe-ecccceeeecccee-eeeecc--------cccee
Confidence            9999986532             2334667777  7777766665 45567888876422 121111        12233


Q ss_pred             EEEEeccCCCCeEEEEcCCc-eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC
Q psy17342        223 LSLAFPQNDVNNFVVGCEDG-NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE  301 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  301 (401)
                      .  +++ +++..+++++.++ .+++|++..... .......|..++++++|+|+      +.+|++|+.||.|++||+.+
T Consensus       124 ~--~~~-~~~~~~~v~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~------~~~l~~g~~dg~i~i~d~~~  193 (287)
T d1pgua2         124 S--AVS-LSQNYVAVGLEEGNTIQVFKLSDLEV-SFDLKTPLRAKPSYISISPS------ETYIAAGDVMGKILLYDLQS  193 (287)
T ss_dssp             E--EEE-ECSSEEEEEETTTSCEEEEETTEEEE-EEECSSCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTT
T ss_pred             e--eee-ccCcceeeeccccceeeeeeccccce-eeeeeeccCCceeEEEeccC------ccccccccccccccceeecc
Confidence            3  444 4567777777665 699999864321 12223357889999999999      79999999999999999988


Q ss_pred             CCceE-EEeecCCceEEEEECCCC---------CcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc
Q psy17342        302 NKPVH-SFNEFRDYVMDVQWSPIN---------PALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT  371 (401)
Q Consensus       302 ~~~~~-~~~~~~~~v~~v~~~~~~---------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  371 (401)
                      ++... .+..|...|.+++|+|.+         ..++++|+.|+.|++||++....  .+....+|...|++++|+|++ 
T Consensus       194 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~--~~~~~~~h~~~V~~v~~~~~~-  270 (287)
T d1pgua2         194 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK--IIKALNAHKDGVNNLLWETPS-  270 (287)
T ss_dssp             TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC--CEEETTSSTTCEEEEEEEETT-
T ss_pred             cccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe--EEEEeCCCCCCeEEEEECCCC-
Confidence            77654 356789999999999854         23799999999999999976542  334445788999999999987 


Q ss_pred             EEEEEecCCcEEEEEe
Q psy17342        372 QLCVGDEKGAITMFDV  387 (401)
Q Consensus       372 ~l~~~~~dg~v~iw~~  387 (401)
                      .|++++.||.|++|++
T Consensus       271 ~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         271 TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEEETTSCEEEEEE
T ss_pred             EEEEEECCCeEEEEEE
Confidence            5889999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.3e-31  Score=232.92  Aligned_cols=271  Identities=13%  Similarity=0.184  Sum_probs=190.9

Q ss_pred             ecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEee-----cCCceEEEEEeCC
Q psy17342        116 FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIG-----TQNAHNLISISND  190 (401)
Q Consensus       116 ~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~l~s~~~d  190 (401)
                      .|.+.|.++++++   +++++++.|++|+|||..................|...+..+....     ..+...+++++.|
T Consensus        12 ~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d   88 (393)
T d1sq9a_          12 AHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS   88 (393)
T ss_dssp             CSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred             cccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCC
Confidence            4889999999864   5899999999999999876543211111122234554443333210     1234577899999


Q ss_pred             CcEEEeeccCCCCCcccccc--ccccccCCccceEEEEeccC----CCCeEEEEcCCceEEEEeCCCCCCC---------
Q psy17342        191 GRLCSWSLEMLSSPQETRDL--QYNNKQTKNLAVLSLAFPQN----DVNNFVVGCEDGNVYSACRHGNKAG---------  255 (401)
Q Consensus       191 g~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~d~~i~~~~~~~~~~~---------  255 (401)
                      |.|++|++............  .......+...+..+++.+.    .+.++++++.||.+++|++......         
T Consensus        89 g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  168 (393)
T d1sq9a_          89 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS  168 (393)
T ss_dssp             SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred             CcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeec
Confidence            99999998653322211110  00001224556777777632    2467899999999999997532110         


Q ss_pred             -------ceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEE------eecCCceEEEEECC
Q psy17342        256 -------NVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSF------NEFRDYVMDVQWSP  322 (401)
Q Consensus       256 -------~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------~~~~~~v~~v~~~~  322 (401)
                             .......+...+++++|+|+       .+|++|+.|++|+|||+++++++..+      .+|..+|.+++|+|
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~v~~s~d-------g~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         169 PTLELQGTVESPMTPSQFATSVDISER-------GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  241 (393)
T ss_dssp             CEEEEEEEECCSSSSCCCCCEEEECTT-------SEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             cceecccceecccCCCCcEEEEEECCC-------CEEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc
Confidence                   01112235566889999997       48999999999999999988877655      45889999999999


Q ss_pred             CCCcEEEEEecCC---EEEEEeCCCCCCCcceE----------EeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        323 INPALFATVEVAG---RVDLWNLNLDTEVPATS----------AIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       323 ~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~----------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      +++ +|++|+.|+   .|++||+++++.+..+.          ...+|...|++++|+|++++|++|+.|++|++||+++
T Consensus       242 dg~-~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         242 QGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             STT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             ccc-eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence            997 899999886   59999999876554432          1135788999999999999999999999999999999


Q ss_pred             Cccceeeeee
Q psy17342        390 VGIACLKFIT  399 (401)
Q Consensus       390 ~~~~~l~~~~  399 (401)
                      +  +++.++.
T Consensus       321 g--~~~~~l~  328 (393)
T d1sq9a_         321 K--ERITTLN  328 (393)
T ss_dssp             T--EEEEEEE
T ss_pred             C--CEEEEEC
Confidence            8  5676654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.9e-30  Score=214.85  Aligned_cols=257  Identities=14%  Similarity=0.155  Sum_probs=192.1

Q ss_pred             cccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEeccC
Q psy17342          9 SQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRN   88 (401)
Q Consensus         9 ~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~   88 (401)
                      .|+||+.||.|++||.....                                 ..|...|.+++|++++ .+++++    
T Consensus        23 ~l~sgs~Dg~v~~Wd~~~~~---------------------------------~~h~~~V~~~~~~~~~-~~~s~s----   64 (287)
T d1pgua2          23 PLISGSYDGRIMEWSSSSMH---------------------------------QDHSNLIVSLDNSKAQ-EYSSIS----   64 (287)
T ss_dssp             TTEEEETTSCEEETTTTEEE---------------------------------CCCCSCEEEEECCSTT-CCEEEE----
T ss_pred             cEEEEeCCCeEEEEECCCCC---------------------------------CCCCCCEEEEEecCCC-eEEEEe----
Confidence            38999999999999864321                                 1466789999999865 678888    


Q ss_pred             CCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCC
Q psy17342         89 KEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTH  168 (401)
Q Consensus        89 ~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  168 (401)
                            .|+++++|+....        .....+.++++++++ .+++++ .++.+.+|+..+......       ..+..
T Consensus        65 ------~D~~v~~w~~~~~--------~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~  121 (287)
T d1pgua2          65 ------WDDTLKVNGITKH--------EFGSQPKVASANNDG-FTAVLT-NDDDLLILQSFTGDIIKS-------VRLNS  121 (287)
T ss_dssp             ------TTTEEEETTEEEE--------ECSSCEEEEEECSSS-EEEEEE-TTSEEEEEETTTCCEEEE-------EECSS
T ss_pred             ------ecccccccccccc--------ccccceeeeeeccCC-ceEEEe-ecccceeeeccceeeeee-------ccccc
Confidence                  6999999998642        224567788898865 555555 577889999887764322       12333


Q ss_pred             cEEEEEEeecCCceEEEEEeCCC-cEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEE
Q psy17342        169 PVFCMSVIGTQNAHNLISISNDG-RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSA  247 (401)
Q Consensus       169 ~v~~~~~~~~~~~~~l~s~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~  247 (401)
                      ++.++    ++++..+++++.++ .+++|++.....   ...+    ...+...+++++|+ +++.+|++|+.||.|++|
T Consensus       122 ~~~~~----~~~~~~~~v~~~~~~~v~~~~~~~~~~---~~~~----~~~~~~~v~~~~~s-~~~~~l~~g~~dg~i~i~  189 (287)
T d1pgua2         122 PGSAV----SLSQNYVAVGLEEGNTIQVFKLSDLEV---SFDL----KTPLRAKPSYISIS-PSETYIAAGDVMGKILLY  189 (287)
T ss_dssp             CEEEE----EECSSEEEEEETTTSCEEEEETTEEEE---EEEC----SSCCSSCEEEEEEC-TTSSEEEEEETTSCEEEE
T ss_pred             eeeee----eccCcceeeeccccceeeeeeccccce---eeee----eeccCCceeEEEec-cCccccccccccccccce
Confidence            44444    44666777777665 799999864211   1111    22366789999999 899999999999999999


Q ss_pred             eCCCCCCCceeeecCCCCceeeeecCccCCC-----CCCCcEEEEEeCCCeEEEEEeeC-CCceEEEeecCCceEEEEEC
Q psy17342        248 CRHGNKAGNVECYEGHEGPVVGLSSHRAQGH-----IDFSHLYLTSSYDWSVKLWNIKE-NKPVHSFNEFRDYVMDVQWS  321 (401)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-----~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~  321 (401)
                      |...... ....+.+|..+|.+++|+|....     .+ +.+|++|+.|++|++||+++ .+.+..+.+|...|++++|+
T Consensus       190 d~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~-~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~  267 (287)
T d1pgua2         190 DLQSREV-KTSRWAFRTSKINAISWKPAEKGANEEEIE-EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE  267 (287)
T ss_dssp             ETTTTEE-EECCSCCCSSCEEEEEECCCC------CCS-CCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEE
T ss_pred             eeccccc-ccccccccccccceeeecccccccccccCC-CCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEEC
Confidence            9975432 23346789999999999986311     11 57899999999999999976 55667777899999999999


Q ss_pred             CCCCcEEEEEecCCEEEEEeC
Q psy17342        322 PINPALFATVEVAGRVDLWNL  342 (401)
Q Consensus       322 ~~~~~~l~~~~~d~~i~iwd~  342 (401)
                      |++  .|++++.|+.|++|++
T Consensus       268 ~~~--~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         268 TPS--TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ETT--EEEEEETTSCEEEEEE
T ss_pred             CCC--EEEEEECCCeEEEEEE
Confidence            986  4788999999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=7.3e-30  Score=222.60  Aligned_cols=275  Identities=12%  Similarity=0.059  Sum_probs=202.0

Q ss_pred             EEEEecC-CCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC-eEEEE
Q psy17342         69 TYMDWST-QHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG-QIVLW  146 (401)
Q Consensus        69 ~~~~~~~-~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg-~v~iw  146 (401)
                      ..-.||| ||+++|+++           +|.|++||.+++...   ...|...|.+++|+|+++.+++++..++ .|++|
T Consensus         6 ~~~~fSP~dG~~~a~~~-----------~g~v~v~d~~~~~~~---~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~   71 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-----------RGQAFIQDVSGTYVL---KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIY   71 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-----------TTEEEEECTTSSBEE---ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEE
T ss_pred             hcccccCCCCCEEEEEE-----------CCeEEEEECCCCcEE---EccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEE
Confidence            3467999 999999988           789999999866543   3468899999999999854444554443 79999


Q ss_pred             ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEE
Q psy17342        147 DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLA  226 (401)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  226 (401)
                      |.++++..       .+..|...|.+++|  +|++.+|++++.++.+.+|++.... ...  .     ...+...+.+++
T Consensus        72 d~~~~~~~-------~~~~~~~~v~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~-~~~--~-----~~~~~~~~~~~~  134 (360)
T d1k32a3          72 DYRTGKAE-------KFEENLGNVFAMGV--DRNGKFAVVANDRFEIMTVDLETGK-PTV--I-----ERSREAMITDFT  134 (360)
T ss_dssp             ETTTCCEE-------ECCCCCCSEEEEEE--CTTSSEEEEEETTSEEEEEETTTCC-EEE--E-----EECSSSCCCCEE
T ss_pred             ECCCCcEE-------EeeCCCceEEeeee--cccccccceeccccccccccccccc-eee--e-----eecccccccchh
Confidence            99887642       34689999999999  9999999999999999999997522 111  1     223667888999


Q ss_pred             eccCCCCeEEEE----------cCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEE
Q psy17342        227 FPQNDVNNFVVG----------CEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKL  296 (401)
Q Consensus       227 ~~~~~~~~l~~~----------~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~i  296 (401)
                      |+ +++++|+.+          ..++.+++|+.....   ...+..|...+..+.|+|+      ++.|++++.++.+++
T Consensus       135 ~s-pdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~---~~~~~~~~~~~~~~~~spd------g~~l~~~s~~~~~~~  204 (360)
T d1k32a3         135 IS-DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---IFAATTENSHDYAPAFDAD------SKNLYYLSYRSLDPS  204 (360)
T ss_dssp             EC-TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---EEECSCSSSBEEEEEECTT------SCEEEEEESCCCCCE
T ss_pred             hc-cceeeeeeeccccccceeeccccceeeeccccCc---eeeecccccccccccccCC------CCEEEEEeCCCceEc
Confidence            99 899998854          345668999987542   3445567788899999998      799999999999999


Q ss_pred             EEeeCCCc-------eEEE----------------------------------------------eecCCceEEEEECCC
Q psy17342        297 WNIKENKP-------VHSF----------------------------------------------NEFRDYVMDVQWSPI  323 (401)
Q Consensus       297 wd~~~~~~-------~~~~----------------------------------------------~~~~~~v~~v~~~~~  323 (401)
                      ||......       ...+                                              ..+.+.+..+.+.+.
T Consensus       205 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (360)
T d1k32a3         205 PDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVH  284 (360)
T ss_dssp             ECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCC
T ss_pred             ccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEec
Confidence            98643211       0111                                              111112222222222


Q ss_pred             CC--cEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        324 NP--ALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       324 ~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      +.  .++++++.++.|++||+.+++.. .      +...|.+++|||||++|++++.||.|++||+++++
T Consensus       285 ~~~~~~~~~~~~~~~i~~~d~~~~~~~-~------~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         285 GEFAAYYQGAPEKGVLLKYDVKTRKVT-E------VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             CSHHHHHHCCCCCEEEEEEETTTCCEE-E------EEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTT
T ss_pred             CCCeeEEEecCCCCEEEEEECCCCeEE-E------ecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCC
Confidence            21  13455667889999999876531 1      22458999999999999999999999999999885

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.4e-30  Score=224.81  Aligned_cols=293  Identities=10%  Similarity=0.060  Sum_probs=204.7

Q ss_pred             CchhhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCC-C
Q psy17342          1 MDWAEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHP-E   79 (401)
Q Consensus         1 ~~~~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~   79 (401)
                      |.|..-+.+||+|+.||+|||||+.......                    .+     .....|..+|.+++|+|++. .
T Consensus        17 l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~--------------------~~-----~~~~~h~~~V~~v~f~~~~~~~   71 (342)
T d1yfqa_          17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNV--------------------DL-----LQSLRYKHPLLCCNFIDNTDLQ   71 (342)
T ss_dssp             EEEEGGGTEEEEEETTSEEEEEEEETTTTEE--------------------EE-----EEEEECSSCEEEEEEEESSSEE
T ss_pred             EEEeCCCCEEEEEECCCeEEEEEccCCCcce--------------------EE-----EEecCCCCCEEEEEEeCCCCCE
Confidence            3566678899999999999999987654110                    01     11124678999999998755 6


Q ss_pred             eEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeec
Q psy17342         80 LLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRT  159 (401)
Q Consensus        80 l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~  159 (401)
                      |++|+          .|+.|++|++............+........+.+ +...+++++.++.+++||++..........
T Consensus        72 l~sg~----------~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~  140 (342)
T d1yfqa_          72 IYVGT----------VQGEILKVDLIGSPSFQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVK  140 (342)
T ss_dssp             EEEEE----------TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred             EEEcc----------cccceeeeeccccccccccccccccccccccccc-ccccccccccccccceeeccccccceeeec
Confidence            77777          7999999999876554433333333444444555 457888999999999999876554333222


Q ss_pred             cccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc
Q psy17342        160 PLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC  239 (401)
Q Consensus       160 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  239 (401)
                      ...............+  .+.+..+++++.|+.|++|++............     ......+.+..+.+.++..+++++
T Consensus       141 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~s  213 (342)
T d1yfqa_         141 NLNSNNTKVKNKIFTM--DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE-----SGLKYQIRDVALLPKEQEGYACSS  213 (342)
T ss_dssp             ESCSSSSSSCCCEEEE--EECSSEEEEEESTTEEEEEESSCCTTCCCEEEE-----CSCSSCEEEEEECSGGGCEEEEEE
T ss_pred             ccccccccceeeeeee--eccCCceeeecCCCcEEEEecccCcccceeeee-----cccccceeeeEeecCCCCEEEeec
Confidence            1111222233334444  567889999999999999999764332222221     224455667777767888999999


Q ss_pred             CCceEEEEeCCCCCCCc-------------eeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceE
Q psy17342        240 EDGNVYSACRHGNKAGN-------------VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVH  306 (401)
Q Consensus       240 ~d~~i~~~~~~~~~~~~-------------~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  306 (401)
                      .||.+.+|+........             .....+|...|++++|+|+      +++|++|+.||.|++||+++++.+.
T Consensus       214 ~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~------~~~lasg~~Dg~v~vWD~~~~~~l~  287 (342)
T d1yfqa_         214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR------HKFLYTAGSDGIISCWNLQTRKKIK  287 (342)
T ss_dssp             TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT------TCCEEEEETTSCEEEEETTTTEEEE
T ss_pred             CCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCC------ccEEEEECCCCEEEEEECCCCcEEE
Confidence            99999999876432110             1112356778999999999      7999999999999999999999888


Q ss_pred             EEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCC
Q psy17342        307 SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNL  344 (401)
Q Consensus       307 ~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~  344 (401)
                      ++..+ ..+..++|+|+++ ++++++.|+.+++|....
T Consensus       288 ~~~~~-~~~~~~~~s~~~~-~l~~a~sdd~~~~~~~~~  323 (342)
T d1yfqa_         288 NFAKF-NEDSVVKIACSDN-ILCLATSDDTFKTNAAID  323 (342)
T ss_dssp             ECCCC-SSSEEEEEEECSS-EEEEEEECTHHHHCSSSC
T ss_pred             EecCC-CCCEEEEEEeCCC-EEEEEEcCCcEEEeeeeC
Confidence            88653 3455677888887 778888888888886543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.2e-29  Score=209.37  Aligned_cols=260  Identities=14%  Similarity=0.238  Sum_probs=194.9

Q ss_pred             hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH   86 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   86 (401)
                      +.+||||+.||+|+|||....+.+                        +.+    ..|.+.|.+++|  ++++|++++  
T Consensus        25 ~~~l~sgs~Dg~i~vWd~~~~~~~------------------------~~l----~~H~~~V~~v~~--~~~~l~s~s--   72 (293)
T d1p22a2          25 DQKIVSGLRDNTIKIWDKNTLECK------------------------RIL----TGHTGSVLCLQY--DERVIITGS--   72 (293)
T ss_dssp             SSEEEEEESSSCEEEEESSSCCEE------------------------EEE----CCCSSCEEEEEC--CSSEEEEEE--
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEE------------------------EEE----ecCCCCEeeeec--ccceeeccc--
Confidence            678999999999999998654411                        111    147789999988  466899999  


Q ss_pred             cCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCC
Q psy17342         87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH  166 (401)
Q Consensus        87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  166 (401)
                              .|+.|++|++..+......  . ........+.+.. ..++++..++.+.+|+..........   .....|
T Consensus        73 --------~D~~i~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  137 (293)
T d1p22a2          73 --------SDSTVRVWDVNTGEMLNTL--I-HHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLR---RVLVGH  137 (293)
T ss_dssp             --------TTSCEEEEESSSCCEEEEE--C-CCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEE---EEECCC
T ss_pred             --------ccccccccccccccccccc--c-ccccccccccccc-cceeecccccceeEeecccccccccc---cccccc
Confidence                    7999999999876543322  2 2222333444433 57788889999999999876643322   234678


Q ss_pred             CCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEE
Q psy17342        167 THPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYS  246 (401)
Q Consensus       167 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~  246 (401)
                      ...+..+.+    ....+++++.|+.+++||++... .  ...     ..++...+..+.++   +..+++++.|+.|++
T Consensus       138 ~~~v~~~~~----~~~~~~~~s~d~~i~~~d~~~~~-~--~~~-----~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i  202 (293)
T d1p22a2         138 RAAVNVVDF----DDKYIVSASGDRTIKVWNTSTCE-F--VRT-----LNGHKRGIACLQYR---DRLVVSGSSDNTIRL  202 (293)
T ss_dssp             SSCEEEEEE----ETTEEEEEETTSEEEEEETTTCC-E--EEE-----EECCSSCEEEEEEE---TTEEEEEETTSCEEE
T ss_pred             cccccccee----cccccccccCCCceeeecCCCCc-E--EEE-----EcccccccccccCC---CCeEEEecCCCEEEE
Confidence            889988877    44568899999999999997522 1  112     23356677777765   578999999999999


Q ss_pred             EeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC---------CCceEEEeecCCceEE
Q psy17342        247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE---------NKPVHSFNEFRDYVMD  317 (401)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~v~~  317 (401)
                      ||++..  ..+..+.+|...+..+...        +.+|++++.||.|++||+..         ..++..+.+|.+.|++
T Consensus       203 ~d~~~~--~~~~~~~~~~~~v~~~~~~--------~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~  272 (293)
T d1p22a2         203 WDIECG--ACLRVLEGHEELVRCIRFD--------NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR  272 (293)
T ss_dssp             EETTTC--CEEEEECCCSSCEEEEECC--------SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCC
T ss_pred             Eecccc--eeeeeecccceeeeecccc--------ceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEE
Confidence            999844  4677888888888776543        57999999999999999864         2456788899999999


Q ss_pred             EEECCCCCcEEEEEecCCEEEEEe
Q psy17342        318 VQWSPINPALFATVEVAGRVDLWN  341 (401)
Q Consensus       318 v~~~~~~~~~l~~~~~d~~i~iwd  341 (401)
                      ++|++  . +|++++.||+|+|||
T Consensus       273 v~~d~--~-~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         273 LQFDE--F-QIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEECS--S-CEEECCSSSEEEEEC
T ss_pred             EEEcC--C-EEEEEecCCEEEEeC
Confidence            99964  3 689999999999998

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=7.5e-28  Score=214.76  Aligned_cols=332  Identities=12%  Similarity=0.051  Sum_probs=215.3

Q ss_pred             hhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEE
Q psy17342          4 AEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLA   83 (401)
Q Consensus         4 ~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   83 (401)
                      .+....+++.+.||.|+|||....+.+..+                             .....+..++|||||++|+++
T Consensus        29 d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l-----------------------------~~g~~~~~vafSPDGk~l~~~   79 (426)
T d1hzua2          29 DLPNLFSVTLRDAGQIALVDGDSKKIVKVI-----------------------------DTGYAVHISRMSASGRYLLVI   79 (426)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCSEEEEE-----------------------------ECCSSEEEEEECTTSCEEEEE
T ss_pred             CCCeEEEEEEcCCCEEEEEECCCCcEEEEE-----------------------------eCCCCeeEEEECCCCCEEEEE
Confidence            344456688889999999998876632221                             112458999999999999999


Q ss_pred             EeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe----cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeec
Q psy17342         84 SYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF----CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRT  159 (401)
Q Consensus        84 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~  159 (401)
                      +          .|++|++||+.+++........    |...+.+++|+|+|..+++++..++.+.+||............
T Consensus        80 ~----------~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~  149 (426)
T d1hzua2          80 G----------RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVST  149 (426)
T ss_dssp             E----------TTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEEC
T ss_pred             e----------CCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeec
Confidence            8          7999999999988765544433    3445667777888866677777899999999988765432211


Q ss_pred             cc-----cccCCCCcEEEEEEeecCCceEEEEEeC-CCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCC
Q psy17342        160 PL-----SVMAHTHPVFCMSVIGTQNAHNLISISN-DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVN  233 (401)
Q Consensus       160 ~~-----~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  233 (401)
                      ..     ....+.+....+..  ++++..++.... .+.+.+++.........  .     ..++...+..++++ ++++
T Consensus       150 ~~~~~~~~~~~~~~~~~~i~~--s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~-~~g~  219 (426)
T d1hzua2         150 RGMTVDTQTYHPEPRVAAIIA--SHEHPEFIVNVKETGKVLLVNYKDIDNLTV--T-----SIGAAPFLADGGWD-SSHR  219 (426)
T ss_dssp             CEECSSSCCEESCCCEEEEEE--CSSSSEEEEEETTTTEEEEEECSSSSSCEE--E-----EEECCSSEEEEEEC-TTSC
T ss_pred             cCCCccceeecCCCceeEEEE--CCCCCEEEEecCCCCeEEEEEeccccceee--E-----EeccCCccEeeeEC-CCCc
Confidence            00     00123334444554  556655554443 34455555443111111  1     12356678899999 6777


Q ss_pred             eEEEE-cCCceEEEEeCCCCCCCceeeec--CCCCceeeeecCccCCCCCCCc-EEEEEeCCCeEEEEEeeC-------C
Q psy17342        234 NFVVG-CEDGNVYSACRHGNKAGNVECYE--GHEGPVVGLSSHRAQGHIDFSH-LYLTSSYDWSVKLWNIKE-------N  302 (401)
Q Consensus       234 ~l~~~-~~d~~i~~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~-------~  302 (401)
                      +++++ ..+..+.+++.....  .+....  .+..+.....+.+...    +. ..++.+.|+.+.+|+...       .
T Consensus       220 ~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~v~~~~~~~~~~~~~~~  293 (426)
T d1hzua2         220 YFMTAANNSNKVAVIDSKDRR--LSALVDVGKTPHPGRGANFVHPKY----GPVWSTSHLGDGSISLIGTDPKNHPQYAW  293 (426)
T ss_dssp             EEEEEETTCSEEEEEETTTTE--EEEEEECSSCCCCSCCEEEEETTT----EEEEEEECTTTCEEEEEECCTTTCTTTBT
T ss_pred             EEEeeeecccceeeeeccccc--EEEEeccCCcccccceeeeecCCC----CceEEeccCCCceEEEeeccccccccccc
Confidence            66555 566678888887543  233322  2222223333332210    11 222334577888887654       3


Q ss_pred             CceEEEeecCCceEEEEECCCCCcEEE-------EEecCCEEEEEeCCCCCCCcceEE------eecCCCCeEEEEecCC
Q psy17342        303 KPVHSFNEFRDYVMDVQWSPINPALFA-------TVEVAGRVDLWNLNLDTEVPATSA------IVEGAPALSRVTWTPN  369 (401)
Q Consensus       303 ~~~~~~~~~~~~v~~v~~~~~~~~~l~-------~~~~d~~i~iwd~~~~~~~~~~~~------~~~~~~~v~~~~~s~~  369 (401)
                      +...++.+|...+..++|+|+++ .++       +++.|++|+|||+.+++....+..      ...+...+.+++||||
T Consensus       294 ~~~~~l~g~~~~v~~v~~sPdg~-~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpD  372 (426)
T d1hzua2         294 KKVAELQGQGGGSLFIKTHPKSS-HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR  372 (426)
T ss_dssp             SEEEEEECSSSCCCCEECCTTCS-EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSS
T ss_pred             eEeEEEecCCCceeEEEcCCCCc-eEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCC
Confidence            67788999999999999999998 555       355689999999998876654321      1234566999999999


Q ss_pred             CcEEEEE-----ecCCcEEEEEeccCc
Q psy17342        370 GTQLCVG-----DEKGAITMFDVGEVG  391 (401)
Q Consensus       370 g~~l~~~-----~~dg~v~iw~~~~~~  391 (401)
                      |++++.+     +.+|.|+|||.++.+
T Consensus       373 Gk~i~vs~~~~~~~~~~i~v~D~~T~k  399 (426)
T d1hzua2         373 GDEVWFSVWNGKNDSSALVVVDDKTLK  399 (426)
T ss_dssp             SSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred             CCEEEEEEecCCCCCCeEEEEECCCCe
Confidence            9977443     357889999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=5.4e-27  Score=204.22  Aligned_cols=284  Identities=12%  Similarity=0.019  Sum_probs=196.2

Q ss_pred             chhh-hhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCe
Q psy17342          2 DWAE-AGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPEL   80 (401)
Q Consensus         2 ~~~~-~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   80 (401)
                      |++= -|+++|+++ .|.+.+||...+..+                              +..|...|.+++|+|||+.|
T Consensus         9 ~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~------------------------------~~~~~~~v~~~~~spDg~~l   57 (360)
T d1k32a3           9 DFSPLDGDLIAFVS-RGQAFIQDVSGTYVL------------------------------KVPEPLRIRYVRRGGDTKVA   57 (360)
T ss_dssp             EEEECGGGCEEEEE-TTEEEEECTTSSBEE------------------------------ECSCCSCEEEEEECSSSEEE
T ss_pred             cccCCCCCEEEEEE-CCeEEEEECCCCcEE------------------------------EccCCCCEEEEEECCCCCEE
Confidence            4442 577777765 578999987654410                              12456789999999999999


Q ss_pred             EEEEeccCCCCCCCCC-cEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeec
Q psy17342         81 LLASYHRNKEAPNEPD-GVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRT  159 (401)
Q Consensus        81 ~~~~~~~~~~~~~~~d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~  159 (401)
                      ++++.         .+ ..|++||.++++..  ....|...|.+++|+|++ ++|++++.++.+++|+..+.+...    
T Consensus        58 ~~~~~---------~~g~~v~v~d~~~~~~~--~~~~~~~~v~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~----  121 (360)
T d1k32a3          58 FIHGT---------REGDFLGIYDYRTGKAE--KFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTV----  121 (360)
T ss_dssp             EEEEE---------TTEEEEEEEETTTCCEE--ECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEE----
T ss_pred             EEEEc---------CCCCEEEEEECCCCcEE--EeeCCCceEEeeeecccc-cccceeccccccccccccccceee----
Confidence            98873         33 47999999876533  344678899999999988 788888999999999998876542    


Q ss_pred             cccccCCCCcEEEEEEeecCCceEEEEEe----------CCCcEEEeeccCCCCCccccccccccccCCccceEEEEecc
Q psy17342        160 PLSVMAHTHPVFCMSVIGTQNAHNLISIS----------NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQ  229 (401)
Q Consensus       160 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  229 (401)
                        .+..|...+.+++|  +|++.+|+.+.          .++.+++|++....    ...+     ..+...+..++|+ 
T Consensus       122 --~~~~~~~~~~~~~~--spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~----~~~~-----~~~~~~~~~~~~s-  187 (360)
T d1k32a3         122 --IERSREAMITDFTI--SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----IFAA-----TTENSHDYAPAFD-  187 (360)
T ss_dssp             --EEECSSSCCCCEEE--CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE----EEEC-----SCSSSBEEEEEEC-
T ss_pred             --eeecccccccchhh--ccceeeeeeeccccccceeeccccceeeeccccCc----eeee-----ccccccccccccc-
Confidence              23578888999999  99999998654          34568999987521    1111     2255678889999 


Q ss_pred             CCCCeEEEEcCCceEEEEeCCCCCC-----CceeeecCCCCceeeeecCccCCCC-------------------------
Q psy17342        230 NDVNNFVVGCEDGNVYSACRHGNKA-----GNVECYEGHEGPVVGLSSHRAQGHI-------------------------  279 (401)
Q Consensus       230 ~~~~~l~~~~~d~~i~~~~~~~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~-------------------------  279 (401)
                      ++++.|++++.++.+.+|+......     ........|...+..+.++|+....                         
T Consensus       188 pdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (360)
T d1k32a3         188 ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR  267 (360)
T ss_dssp             TTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE
T ss_pred             CCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCcee
Confidence            8999999999999999998643210     0011111121111111111110000                         


Q ss_pred             ------------------CCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEe
Q psy17342        280 ------------------DFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWN  341 (401)
Q Consensus       280 ------------------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd  341 (401)
                                        ....++++++.++.|++||+.+++.    ..|.+.|.+++|+|||+ .|++++.||.|++||
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~~~~~v~~~~~SpDG~-~l~~~~~Dg~i~v~d  342 (360)
T d1k32a3         268 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRK-TVMVRKDDGKIYTFP  342 (360)
T ss_dssp             EEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE----EEEEEEEEEEEECTTSC-EEEEEETTSCEEEEE
T ss_pred             EeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE----EEecCCcCEEEECCCCC-EEEEEECCCeEEEEE
Confidence                              0012344556688999999987653    23445689999999998 789999999999999


Q ss_pred             CCCCCCCcce
Q psy17342        342 LNLDTEVPAT  351 (401)
Q Consensus       342 ~~~~~~~~~~  351 (401)
                      +++++....+
T Consensus       343 ~~~~~~~~~~  352 (360)
T d1k32a3         343 LEKPEDERTV  352 (360)
T ss_dssp             SSCTTSCEEC
T ss_pred             CCCCCcceEE
Confidence            9988765543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=1.6e-24  Score=183.62  Aligned_cols=271  Identities=11%  Similarity=0.113  Sum_probs=193.8

Q ss_pred             CCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEE
Q psy17342         94 EPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCM  173 (401)
Q Consensus        94 ~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  173 (401)
                      +.+++|.+||+++++.+.++..  ...+..++|+|+++.++++++.++.|++||+.+.+....      +..+. .+..+
T Consensus         9 ~~~~~v~v~D~~t~~~~~~i~~--g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~------~~~~~-~~~~~   79 (301)
T d1l0qa2           9 SESDNISVIDVTSNKVTATIPV--GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT------VPAGS-SPQGV   79 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE------EECSS-SEEEE
T ss_pred             CCCCEEEEEECCCCeEEEEEEC--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee------eeccc-ccccc
Confidence            4799999999998876655543  466889999999966667888899999999988765322      23333 46788


Q ss_pred             EEeecCCceEEE-EEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeE-EEEcCCceEEEEeCCC
Q psy17342        174 SVIGTQNAHNLI-SISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNF-VVGCEDGNVYSACRHG  251 (401)
Q Consensus       174 ~~~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~d~~i~~~~~~~  251 (401)
                      .|  ++++..++ ++..++.+.+|+..... ....  +.      +...+.++.++ +++..+ +++..++.+.+|+...
T Consensus        80 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~------~~~~~~~~~~~-~dg~~~~~~~~~~~~~~~~~~~~  147 (301)
T d1l0qa2          80 AV--SPDGKQVYVTNMASSTLSVIDTTSNT-VAGT--VK------TGKSPLGLALS-PDGKKLYVTNNGDKTVSVINTVT  147 (301)
T ss_dssp             EE--CTTSSEEEEEETTTTEEEEEETTTTE-EEEE--EE------CSSSEEEEEEC-TTSSEEEEEETTTTEEEEEETTT
T ss_pred             cc--ccccccccccccccceeeecccccce-eeee--cc------ccccceEEEee-cCCCeeeeeeccccceeeeeccc
Confidence            88  77877554 55667789999987521 1111  11      33467889999 676665 5666788899999874


Q ss_pred             CCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC-CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEE
Q psy17342        252 NKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFAT  330 (401)
Q Consensus       252 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~  330 (401)
                      .  .....+. +...+..+.++|+      +..+++++. ++.+.+|+....+....+.. ...+..+++++++..++++
T Consensus       148 ~--~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~  217 (301)
T d1l0qa2         148 K--AVINTVS-VGRSPKGIAVTPD------GTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVT  217 (301)
T ss_dssp             T--EEEEEEE-CCSSEEEEEECTT------SSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEE
T ss_pred             c--ceeeecc-cCCCceEEEeecc------ccceeeecccccccccccccceeeeecccc-cCCcceeeccccccccccc
Confidence            3  3444554 3455678899998      455555554 56777887766666555554 5567889999999855444


Q ss_pred             Ee--cCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEE-EEEecCCcEEEEEeccCccceeeeeecC
Q psy17342        331 VE--VAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQL-CVGDEKGAITMFDVGEVGIACLKFITSG  401 (401)
Q Consensus       331 ~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~v~iw~~~~~~~~~l~~~~~g  401 (401)
                      +.  .++.|++||+.+++....+    .....+..++|+|||++| ++++.|+.|++||++++  +.+++++.|
T Consensus       218 ~~~~~~~~v~v~D~~t~~~~~~~----~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~--~~~~~~~vg  285 (301)
T d1l0qa2         218 NVDKYFNTVSMIDTGTNKITARI----PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN--TITATMAVG  285 (301)
T ss_dssp             EECSSCCEEEEEETTTTEEEEEE----ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEECS
T ss_pred             cccceeeeeeeeecCCCeEEEEE----cCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC--eEEEEEeCC
Confidence            32  3478999999987654433    345668999999999987 56778999999999998  567777643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=8.7e-26  Score=200.89  Aligned_cols=318  Identities=14%  Similarity=0.094  Sum_probs=199.0

Q ss_pred             ccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEeccCC
Q psy17342         10 QISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNK   89 (401)
Q Consensus        10 ~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~   89 (401)
                      +++.+.+|.++|||....+.+..+                             .....+..++|||||+++++++     
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v~~~~-----------------------------~~g~~~~~v~fSpDG~~l~~~s-----   80 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEIKTVL-----------------------------DTGYAVHISRLSASGRYLFVIG-----   80 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEE-----------------------------ECSSCEEEEEECTTSCEEEEEE-----
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEE-----------------------------eCCCCeeEEEECCCCCEEEEEc-----
Confidence            578888999999998777632222                             1114589999999999999998     


Q ss_pred             CCCCCCCcEEEEEeCcCCCCCceEEEe----cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccc----
Q psy17342         90 EAPNEPDGVCLIWNTKFKKTTPEFEFF----CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPL----  161 (401)
Q Consensus        90 ~~~~~~d~~v~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~----  161 (401)
                           .|+.|.+||+.+++........    +.+.+.+..|+|||+.++++++.++.|++||..+++.........    
T Consensus        81 -----~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~  155 (432)
T d1qksa2          81 -----RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYD  155 (432)
T ss_dssp             -----TTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTT
T ss_pred             -----CCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCcccc
Confidence                 7999999999887654443333    334555666778896677889999999999999877543322110    


Q ss_pred             -cccCCCCcEEEEEEeecCCceEE-EEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc
Q psy17342        162 -SVMAHTHPVFCMSVIGTQNAHNL-ISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC  239 (401)
Q Consensus       162 -~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  239 (401)
                       ....+......+.+  ++++..+ ++...++.|.+|+...... .....+.      +...+..++|+ |+++++++++
T Consensus       156 ~~~~~~~~~~~~v~~--s~dg~~~~vs~~~~~~i~~~d~~~~~~-~~~~~i~------~g~~~~~~~~s-pdg~~~~va~  225 (432)
T d1qksa2         156 EQEYHPEPRVAAILA--SHYRPEFIVNVKETGKILLVDYTDLNN-LKTTEIS------AERFLHDGGLD-GSHRYFITAA  225 (432)
T ss_dssp             TCCEESCCCEEEEEE--CSSSSEEEEEETTTTEEEEEETTCSSE-EEEEEEE------CCSSEEEEEEC-TTSCEEEEEE
T ss_pred             ceeccCCCceeEEEE--CCCCCEEEEEEccCCeEEEEEccCCCc-ceEEEEc------ccCccccceEC-CCCCEEEEec
Confidence             11235566777777  8888765 5667789999999865221 1111111      34567899999 8888777665


Q ss_pred             C-CceEEEEeCCCCCCCceeeec-----CCCCceeeeecCccCCCCCCCcEEEEEe-CCCeEEEEEeeCCC-------ce
Q psy17342        240 E-DGNVYSACRHGNKAGNVECYE-----GHEGPVVGLSSHRAQGHIDFSHLYLTSS-YDWSVKLWNIKENK-------PV  305 (401)
Q Consensus       240 ~-d~~i~~~~~~~~~~~~~~~~~-----~~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~-------~~  305 (401)
                      . ++.+.+++.....  ....+.     .|........+...      +...++.. .++.|.+|+.....       ..
T Consensus       226 ~~~~~v~v~d~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~------g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~  297 (432)
T d1qksa2         226 NARNKLVVIDTKEGK--LVAIEDTGGQTPHPGRGANFVHPTF------GPVWATSHMGDDSVALIGTDPEGHPDNAWKIL  297 (432)
T ss_dssp             GGGTEEEEEETTTTE--EEEEEECSSSSBCCTTCEEEEETTT------EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE
T ss_pred             cccceEEEeecccce--EEEEeccCccccccCcccceecCCC------CceecccccCCceEEecccccccccccccEEE
Confidence            5 5568888876432  222221     12222222222222      33333333 26677777654321       11


Q ss_pred             EEEeecCC-------------------------ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCC
Q psy17342        306 HSFNEFRD-------------------------YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPA  360 (401)
Q Consensus       306 ~~~~~~~~-------------------------~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  360 (401)
                      ..+..+.+                         ...++++ |+++ .+++++.|+.+++|++.+...+      ..|...
T Consensus       298 ~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~-~la~~s~d~~~k~w~~~~~~~l------~~~~~~  369 (432)
T d1qksa2         298 DSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIK-AMTGDGSDPEFKTLPIAEWAGI------TEGQPR  369 (432)
T ss_dssp             EEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGG-GCCCSSSCCCEEEECHHHHHTC------CSSCCE
T ss_pred             EEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-Eech-hhcccccCCceEeccccccccc------CCCCCc
Confidence            11111111                         1112333 5554 4666777777777776543222      135567


Q ss_pred             eEEEEecCCCcEEEEEe-----cCCcEEEEEeccCcc
Q psy17342        361 LSRVTWTPNGTQLCVGD-----EKGAITMFDVGEVGI  392 (401)
Q Consensus       361 v~~~~~s~~g~~l~~~~-----~dg~v~iw~~~~~~~  392 (401)
                      +.+++|||||++|+.+.     .+|.|.|||.++.++
T Consensus       370 v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~  406 (432)
T d1qksa2         370 VVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL  406 (432)
T ss_dssp             EEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             EEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence            88999999999886553     468899999999854

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.93  E-value=4.5e-25  Score=190.74  Aligned_cols=296  Identities=11%  Similarity=0.024  Sum_probs=196.4

Q ss_pred             EEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCC
Q psy17342         71 MDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRV  150 (401)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~  150 (401)
                      ++|++++++|++++          .+++|.+||+++++.+.++...+...+.+++|+||+..+++++..++.|.+||+.+
T Consensus         2 ~a~~~~~~~l~~~~----------~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t   71 (346)
T d1jmxb_           2 PALKAGHEYMIVTN----------YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT   71 (346)
T ss_dssp             CCCCTTCEEEEEEE----------TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ccCCCCCcEEEEEc----------CCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCcc
Confidence            47899999999999          79999999999988877776666777899999999976778888899999999998


Q ss_pred             CCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEe------------CCCcEEEeeccCCCCCccccccccccccCC
Q psy17342        151 QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISIS------------NDGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      ++.............+...+..++|  +++|.++++++            .++.+.+|+........ ......     .
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~v~~--s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~-----~  143 (346)
T d1jmxb_          72 CKNTFHANLSSVPGEVGRSMYSFAI--SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK-PVRTFP-----M  143 (346)
T ss_dssp             TEEEEEEESCCSTTEEEECSSCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC-CSEEEE-----C
T ss_pred             CeeeeeecccccccccCCceEEEEE--ecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeee-EEEeee-----c
Confidence            7654332211111222234557888  89999887765            46678888876522111 111111     1


Q ss_pred             ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCC-------------------
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHI-------------------  279 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-------------------  279 (401)
                      ...+..+.++ +++..++. +  +.+.+|+...  ...+..+..+ .....+.++|.....                   
T Consensus       144 ~~~~~~~~~~-~~~~~~~~-~--~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (346)
T d1jmxb_         144 PRQVYLMRAA-DDGSLYVA-G--PDIYKMDVKT--GKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF  216 (346)
T ss_dssp             CSSCCCEEEC-TTSCEEEE-S--SSEEEECTTT--CCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred             cCceEEEEec-CCCEEEEe-C--CcceEEEccC--CCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeeeeee
Confidence            2234445555 55554443 2  4577788763  3344444433 223444454442100                   


Q ss_pred             -CCCcEEEEEeCCCeEEEEEeeCCCceEE-EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecC
Q psy17342        280 -DFSHLYLTSSYDWSVKLWNIKENKPVHS-FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG  357 (401)
Q Consensus       280 -~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  357 (401)
                       .....++++..+..+.+||..++..... +..|...+..+.+++++.. ++... ++.|.+||..+++.+..+    ..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~v~d~~~~~~~~~~----~~  290 (346)
T d1jmxb_         217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGV-LNRLAKYDLKQRKLIKAA----NL  290 (346)
T ss_dssp             -------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT-EEEEE-ESEEEEEETTTTEEEEEE----EC
T ss_pred             ccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCE-EEEec-CCeEEEEECCCCcEEEEE----cC
Confidence             0011223334456788888887765544 4567788999999999874 55554 568999999987655443    33


Q ss_pred             CCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceeeeee
Q psy17342        358 APALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLKFIT  399 (401)
Q Consensus       358 ~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~~  399 (401)
                      ...+.+++|+|||++|++++.||.|++||++++  +.+..+.
T Consensus       291 ~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~--~~i~~i~  330 (346)
T d1jmxb_         291 DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL--EKVKNIK  330 (346)
T ss_dssp             SSCCCEEEECSSSSCEEEESBSSEEEEEETTTT--EEEEEEE
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccC--CEEEEEE
Confidence            456889999999999999999999999999987  5555543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=1.1e-23  Score=178.46  Aligned_cols=272  Identities=9%  Similarity=0.041  Sum_probs=194.5

Q ss_pred             cccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEeccCCC
Q psy17342         11 ISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRNKE   90 (401)
Q Consensus        11 ~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~   90 (401)
                      ++++.++.|++||....+.+..+                             .....+..++|+|+|++|++++.     
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i-----------------------------~~g~~p~~va~spdG~~l~v~~~-----   51 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATI-----------------------------PVGSNPMGAVISPDGTKVYVANA-----   51 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEE-----------------------------ECSSSEEEEEECTTSSEEEEEEG-----
T ss_pred             EEECCCCEEEEEECCCCeEEEEE-----------------------------ECCCCceEEEEeCCCCEEEEEEC-----
Confidence            46778999999998766521111                             11244788999999999876662     


Q ss_pred             CCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcE
Q psy17342         91 APNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPV  170 (401)
Q Consensus        91 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  170 (401)
                          .++.|++||+.+++.+..+  .....+..++|++++..+++++..++.+.+|+..+.+....       ..+....
T Consensus        52 ----~~~~i~v~d~~t~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  118 (301)
T d1l0qa2          52 ----HSNDVSIIDTATNNVIATV--PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT-------VKTGKSP  118 (301)
T ss_dssp             ----GGTEEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-------EECSSSE
T ss_pred             ----CCCEEEEEECCCCceeeee--eccccccccccccccccccccccccceeeecccccceeeee-------ccccccc
Confidence                6899999999987765544  33456889999999877888888889999999987754322       2344567


Q ss_pred             EEEEEeecCCceEEE-EEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC-CceEEEEe
Q psy17342        171 FCMSVIGTQNAHNLI-SISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE-DGNVYSAC  248 (401)
Q Consensus       171 ~~~~~~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~~i~~~~  248 (401)
                      .++.+  ++++..++ ++..++.+.+|+.....   ....+.      ....+..++++ +++..+++++. .+.+.+++
T Consensus       119 ~~~~~--~~dg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  186 (301)
T d1l0qa2         119 LGLAL--SPDGKKLYVTNNGDKTVSVINTVTKA---VINTVS------VGRSPKGIAVT-PDGTKVYVANFDSMSISVID  186 (301)
T ss_dssp             EEEEE--CTTSSEEEEEETTTTEEEEEETTTTE---EEEEEE------CCSSEEEEEEC-TTSSEEEEEETTTTEEEEEE
T ss_pred             eEEEe--ecCCCeeeeeeccccceeeeeccccc---eeeecc------cCCCceEEEee-ccccceeeeccccccccccc
Confidence            78888  88888765 55567889999987522   111111      33457888999 67777666654 46677777


Q ss_pred             CCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe---CCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCC
Q psy17342        249 RHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS---YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINP  325 (401)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~  325 (401)
                      ....  ....... ....+..+.++++      +..++.++   .++.|++||+.+++.+..+.. ...+.+++|+|+|+
T Consensus       187 ~~~~--~~~~~~~-~~~~~~~~~~~~~------g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~va~spdg~  256 (301)
T d1l0qa2         187 TVTN--SVIDTVK-VEAAPSGIAVNPE------GTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTPDGK  256 (301)
T ss_dssp             TTTT--EEEEEEE-CSSEEEEEEECTT------SSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSS
T ss_pred             ccce--eeeeccc-ccCCcceeecccc------ccccccccccceeeeeeeeecCCCeEEEEEcC-CCCEEEEEEeCCCC
Confidence            6533  2333343 3455678889988      45554443   246899999999998888876 45689999999998


Q ss_pred             cEEEEEecCCEEEEEeCCCCCCCcce
Q psy17342        326 ALFATVEVAGRVDLWNLNLDTEVPAT  351 (401)
Q Consensus       326 ~~l~~~~~d~~i~iwd~~~~~~~~~~  351 (401)
                      .++++++.|+.|++||+++++.+..+
T Consensus       257 ~l~va~~~~~~i~v~D~~t~~~~~~~  282 (301)
T d1l0qa2         257 KVYVALSFCNTVSVIDTATNTITATM  282 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCeEEEEECCCCeEEEEE
Confidence            66788888999999999988765544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=3.7e-23  Score=177.91  Aligned_cols=284  Identities=10%  Similarity=0.059  Sum_probs=188.3

Q ss_pred             CCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEec-CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCce
Q psy17342         78 PELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPV  156 (401)
Q Consensus        78 ~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~  156 (401)
                      +++++++          .|++|.|||+++++.+..+..+. ...+.+++|+|++..++++++.++.|.+||+.+++....
T Consensus         2 ~~~vt~~----------~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~   71 (337)
T d1pbyb_           2 DYILAPA----------RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR   71 (337)
T ss_dssp             EEEEEEE----------TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             eEEEEEc----------CCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEE
Confidence            3688888          79999999999887776665543 356889999999865667888899999999998775432


Q ss_pred             eeccccccCCCCcEEEEEEeecCCceEEEEEeC------------CCcEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342        157 HRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN------------DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS  224 (401)
Q Consensus       157 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (401)
                      .... ....+...+..++|  +|++.+++++..            +..+.+||..... ....  +      .....+..
T Consensus        72 ~~~~-~~~~~~~~~~~v~~--s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~--~------~~~~~~~~  139 (337)
T d1pbyb_          72 IDLS-TPEERVKSLFGAAL--SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKA--F------EAPRQITM  139 (337)
T ss_dssp             EECC-BTTEEEECTTCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEE--E------ECCSSCCC
T ss_pred             EecC-CCcccccceeeEEE--cCCCcEEEEeecCCcceeeeccccccceeeccccCCe-EEEe--c------cccCCceE
Confidence            2211 01112234456788  899998887764            5567777776421 1111  1      13345778


Q ss_pred             EEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCC----CCCcE----E----------E
Q psy17342        225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHI----DFSHL----Y----------L  286 (401)
Q Consensus       225 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~----~~~~~----l----------~  286 (401)
                      ++|+ ++++++++++.+  +.+||.....  ....+..+.. .....+.|+....    .....    .          .
T Consensus       140 ~~~s-~dg~~l~~~~~~--~~~~d~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (337)
T d1pbyb_         140 LAWA-RDGSKLYGLGRD--LHVMDPEAGT--LVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPAD  213 (337)
T ss_dssp             EEEC-TTSSCEEEESSS--EEEEETTTTE--EEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTS
T ss_pred             EEEc-CCCCEEEEEcCC--cceeeeecCc--EEEEeecCCc-cccceecCCcceeeccccccceeeeeeeeeeeccceee
Confidence            8999 899999988755  5678876432  3333332221 1111222211000    00000    1          1


Q ss_pred             EEeCCCeEEEEEeeCCCceEE-EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEE
Q psy17342        287 TSSYDWSVKLWNIKENKPVHS-FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVT  365 (401)
Q Consensus       287 s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  365 (401)
                      .++.++.+.+||..+++.... +..+...+..+.++|++. +++.+  ++.|++||+.+++.+..+    .+...+.+++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~i~v~d~~~~~~~~~~----~~~~~~~~~~  286 (337)
T d1pbyb_         214 PTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT-RAFGA--YNVLESFDLEKNASIKRV----PLPHSYYSVN  286 (337)
T ss_dssp             GGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSS-EEEEE--ESEEEEEETTTTEEEEEE----ECSSCCCEEE
T ss_pred             ecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccce-EEEEc--cccEEEEECCCCcEEEEE----cCCCCEEEEE
Confidence            112245689999988775543 455677888999999997 55544  689999999988765543    3456688999


Q ss_pred             ecCCCcEEEEEecCCcEEEEEeccCccceeeee
Q psy17342        366 WTPNGTQLCVGDEKGAITMFDVGEVGIACLKFI  398 (401)
Q Consensus       366 ~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~~~  398 (401)
                      |+|||++|++++.||.|++||+.+.  +.+.++
T Consensus       287 ~s~dG~~l~v~~~~~~i~v~D~~t~--~~v~~i  317 (337)
T d1pbyb_         287 VSTDGSTVWLGGALGDLAAYDAETL--EKKGQV  317 (337)
T ss_dssp             ECTTSCEEEEESBSSEEEEEETTTC--CEEEEE
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCCC--cEEEEE
Confidence            9999999999999999999999987  455544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=8.2e-22  Score=169.22  Aligned_cols=289  Identities=11%  Similarity=0.094  Sum_probs=193.9

Q ss_pred             CCcEEEEEeCcCCCCCc-eEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEE
Q psy17342         95 PDGVCLIWNTKFKKTTP-EFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCM  173 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  173 (401)
                      .+++|++|++.....+. .....+.+.+..|+|+||++.+++++..|+.|++|++...........   ...+...+..+
T Consensus        12 ~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~---~~~~~~~p~~l   88 (333)
T d1ri6a_          12 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA---ESALPGSLTHI   88 (333)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE---EEECSSCCSEE
T ss_pred             CCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEee---ecccCCCceEE
Confidence            79999999997544332 233567889999999999865656666789999999987654322111   12344456679


Q ss_pred             EEeecCCceEEEEEeC-CCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc-CCceEEEEeCCC
Q psy17342        174 SVIGTQNAHNLISISN-DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-EDGNVYSACRHG  251 (401)
Q Consensus       174 ~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~~~~~~~  251 (401)
                      +|  +|++++|++++. ++.+.+|+..... .......     ..+...+.++.++ ++++.+++++ .+..+.+|+...
T Consensus        89 ~~--spDg~~l~v~~~~~~~v~~~~~~~~~-~~~~~~~-----~~~~~~~~~v~~s-~d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_          89 ST--DHQGQFVFVGSYNAGNVSVTRLEDGL-PVGVVDV-----VEGLDGCHSANIS-PDNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             EE--CTTSSEEEEEETTTTEEEEEEEETTE-EEEEEEE-----ECCCTTBCCCEEC-TTSSEEEEEEGGGTEEEEEEECT
T ss_pred             EE--cCCCCEEeecccCCCceeeecccccc-ceecccc-----cCCCccceEEEee-ecceeeeccccccceeeEEEecc
Confidence            99  999999988875 6688999876421 1111111     2245567788999 7888776665 455688998764


Q ss_pred             CCCCcee----eecCCCCceeeeecCccCCCCCCCcEEE-EEeCCCeEEEEEeeCCCceE----EEe------ecCCceE
Q psy17342        252 NKAGNVE----CYEGHEGPVVGLSSHRAQGHIDFSHLYL-TSSYDWSVKLWNIKENKPVH----SFN------EFRDYVM  316 (401)
Q Consensus       252 ~~~~~~~----~~~~~~~~v~~i~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~----~~~------~~~~~v~  316 (401)
                      .......    ...........++|++.      +..++ +....+...+|+........    ...      .......
T Consensus       160 ~~~~~~~~~~~~~~~~g~~p~~i~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (333)
T d1ri6a_         160 DGHLVAQDPAEVTTVEGAGPRHMVFHPN------EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAA  233 (333)
T ss_dssp             TSCEEEEEEEEEECSTTCCEEEEEECTT------SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred             CCcceeeeceeeeeecCCCccEEEEecc------ceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccce
Confidence            3321111    11123345678899988      44544 44456778888875432211    111      1234567


Q ss_pred             EEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEe-cCCcEEEEEe--ccCccc
Q psy17342        317 DVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGD-EKGAITMFDV--GEVGIA  393 (401)
Q Consensus       317 ~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~v~iw~~--~~~~~~  393 (401)
                      .++++++++.+++++..++.+.+|++..................+..++|+|||++|++++ .++.|.+|++  ++++++
T Consensus       234 ~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~  313 (333)
T d1ri6a_         234 DIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH  313 (333)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred             eEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence            8899999997788888889999999987665555444444556678899999999987765 4588999966  466667


Q ss_pred             eeeeeecC
Q psy17342        394 CLKFITSG  401 (401)
Q Consensus       394 ~l~~~~~g  401 (401)
                      .+..++.|
T Consensus       314 ~~~~~~~g  321 (333)
T d1ri6a_         314 EKGRYAVG  321 (333)
T ss_dssp             EEEEEECS
T ss_pred             EEEeccCC
Confidence            77666654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=1.4e-22  Score=174.20  Aligned_cols=287  Identities=6%  Similarity=-0.038  Sum_probs=190.0

Q ss_pred             hccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEec
Q psy17342          7 GESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYH   86 (401)
Q Consensus         7 ~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   86 (401)
                      ++++++++.|+.|+|||....+.+..++.                          -.+...+.+++|+|||+++++++  
T Consensus         1 ~~~~vt~~~d~~v~v~D~~s~~~~~~i~~--------------------------~~~~~~~~~i~~spDg~~l~v~~--   52 (337)
T d1pbyb_           1 RDYILAPARPDKLVVIDTEKMAVDKVITI--------------------------ADAGPTPMVPMVAPGGRIAYATV--   52 (337)
T ss_dssp             CEEEEEEETTTEEEEEETTTTEEEEEEEC--------------------------TTCTTCCCCEEECTTSSEEEEEE--
T ss_pred             CeEEEEEcCCCEEEEEECCCCeEEEEEEC--------------------------CCCCCCccEEEECCCCCEEEEEE--
Confidence            47899999999999999876652221110                          01224477899999999887665  


Q ss_pred             cCCCCCCCCCcEEEEEeCcCCCCCceEEEec----CCCeeEEEEeCCCCceEEEEe------------cCCeEEEEECCC
Q psy17342         87 RNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC----QSPVLSCCFAKFNPYLILGGT------------YSGQIVLWDTRV  150 (401)
Q Consensus        87 ~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~g~------------~dg~v~iw~~~~  150 (401)
                             ..++.|.+||+.+++.+.......    ...+..++|+|++. .++++.            .++.+.+||..+
T Consensus        53 -------~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~  124 (337)
T d1pbyb_          53 -------NKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAET  124 (337)
T ss_dssp             -------TTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTT
T ss_pred             -------CCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCc-EEEEeecCCcceeeeccccccceeeccccC
Confidence                   268999999999887665554331    23456899999884 554443            356788898887


Q ss_pred             CCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccc----------------c
Q psy17342        151 QKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYN----------------N  214 (401)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~----------------~  214 (401)
                      ......       ..+...+..++|  ++++.++++++.+  +.+||...... .........                .
T Consensus       125 ~~~~~~-------~~~~~~~~~~~~--s~dg~~l~~~~~~--~~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (337)
T d1pbyb_         125 LSRRKA-------FEAPRQITMLAW--ARDGSKLYGLGRD--LHVMDPEAGTL-VEDKPIQSWEAETYAQPDVLAVWNQH  192 (337)
T ss_dssp             TEEEEE-------EECCSSCCCEEE--CTTSSCEEEESSS--EEEEETTTTEE-EEEECSTTTTTTTBCCCBCCCCCCCC
T ss_pred             CeEEEe-------ccccCCceEEEE--cCCCCEEEEEcCC--cceeeeecCcE-EEEeecCCccccceecCCcceeeccc
Confidence            664322       223455778888  9999999998754  67788764221 111110000                0


Q ss_pred             ccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeE
Q psy17342        215 KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSV  294 (401)
Q Consensus       215 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i  294 (401)
                      ...+.......... .+......+..++.+.+|+...... ....+..+...+..+.++|.      +.+++.+  ++.|
T Consensus       193 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~i  262 (337)
T d1pbyb_         193 ESSGVMATPFYTAR-KDIDPADPTAYRTGLLTMDLETGEM-AMREVRIMDVFYFSTAVNPA------KTRAFGA--YNVL  262 (337)
T ss_dssp             TTTTEEEEEEEEEB-TTSCTTSGGGEEEEEEEEETTTCCE-EEEEEEECSSCEEEEEECTT------SSEEEEE--ESEE
T ss_pred             cccceeeeeeeeee-eccceeeecccCccEEEEEcCCCcE-EEEEecCCCcceEEEEeccc------ceEEEEc--cccE
Confidence            00001111111111 2223333445566788888874432 22334567777888899988      5666654  5899


Q ss_pred             EEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEE
Q psy17342        295 KLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSA  353 (401)
Q Consensus       295 ~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  353 (401)
                      ++||+.+++.+..+.. ...+.+++|+|+|+ .|++++.|+.|++||..+.+.+..+..
T Consensus       263 ~v~d~~~~~~~~~~~~-~~~~~~~~~s~dG~-~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         263 ESFDLEKNASIKRVPL-PHSYYSVNVSTDGS-TVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EEEETTTTEEEEEEEC-SSCCCEEEECTTSC-EEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             EEEECCCCcEEEEEcC-CCCEEEEEECCCCC-EEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            9999999999888764 66789999999998 778899999999999999887766654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=2.8e-21  Score=171.83  Aligned_cols=282  Identities=11%  Similarity=0.045  Sum_probs=182.9

Q ss_pred             CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEE
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMS  174 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  174 (401)
                      .||+|+|||+.+++.+.++..  ...+..++|+||| +++++++.|+.|++||+.+.+....... ....+|.+.+.+++
T Consensus        40 ~dg~v~vwD~~t~~~~~~l~~--g~~~~~vafSPDG-k~l~~~~~d~~v~vwd~~t~~~~~~~~i-~~~~~~~~~~~s~~  115 (426)
T d1hzua2          40 DAGQIALVDGDSKKIVKVIDT--GYAVHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVAEI-KIGIEARSVESSKF  115 (426)
T ss_dssp             TTTEEEEEETTTCSEEEEEEC--CSSEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEEEE-ECCSEEEEEEECCS
T ss_pred             CCCEEEEEECCCCcEEEEEeC--CCCeeEEEECCCC-CEEEEEeCCCCEEEEEccCCceeEEEEE-eCCCCCcceEEeee
Confidence            799999999999888776654  3569999999988 6788888999999999998875433221 11235666666777


Q ss_pred             EeecCCceEEEE-EeCCCcEEEeeccCCCCCccccccccc----cccCCccceEEEEeccCCCCeEEEE-cCCceEEEEe
Q psy17342        175 VIGTQNAHNLIS-ISNDGRLCSWSLEMLSSPQETRDLQYN----NKQTKNLAVLSLAFPQNDVNNFVVG-CEDGNVYSAC  248 (401)
Q Consensus       175 ~~~~~~~~~l~s-~~~dg~i~~wd~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~~~~  248 (401)
                      |  +|+|+++++ +..++.+.+||..... ..........    ....+......+..+ +++..++.. ...+.+.+++
T Consensus       116 ~--spDG~~l~v~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~s-~d~~~~~~~~~~~~~i~~~~  191 (426)
T d1hzua2         116 K--GYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVDTQTYHPEPRVAAIIAS-HEHPEFIVNVKETGKVLLVN  191 (426)
T ss_dssp             T--TCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSSSCCEESCCCEEEEEEC-SSSSEEEEEETTTTEEEEEE
T ss_pred             e--cCCCCEEEEeecCCCeEEEEcCCccc-eeEEeeccCCCccceeecCCCceeEEEEC-CCCCEEEEecCCCCeEEEEE
Confidence            7  899998755 4578999999987632 2211111000    011133344556666 555555443 3445666666


Q ss_pred             CCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe-CCCeEEEEEeeCCCceEEEeecC--CceEEEEECCC--
Q psy17342        249 RHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS-YDWSVKLWNIKENKPVHSFNEFR--DYVMDVQWSPI--  323 (401)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~--~~v~~v~~~~~--  323 (401)
                      ...... ......++...+..+.++|+      +++++++. .+..+.+++..+++.+..+....  .......+.+.  
T Consensus       192 ~~~~~~-~~~~~~~~~~~~~~~~~~~~------g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (426)
T d1hzua2         192 YKDIDN-LTVTSIGAAPFLADGGWDSS------HRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY  264 (426)
T ss_dssp             CSSSSS-CEEEEEECCSSEEEEEECTT------SCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTT
T ss_pred             eccccc-eeeEEeccCCccEeeeECCC------CcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCC
Confidence            543322 22233457778899999998      56555554 57789999999888877765421  12223333332  


Q ss_pred             CCcEEEEEecCCEEEEEeCCCCCCC----cceEEeecCCCCeEEEEecCCCcEEEE-------EecCCcEEEEEeccCc
Q psy17342        324 NPALFATVEVAGRVDLWNLNLDTEV----PATSAIVEGAPALSRVTWTPNGTQLCV-------GDEKGAITMFDVGEVG  391 (401)
Q Consensus       324 ~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~s~~g~~l~~-------~~~dg~v~iw~~~~~~  391 (401)
                      +....++.+.|+.+.+|+.......    .......+|...+..++|+|||++|++       ++.|++|+|||+.+++
T Consensus       265 ~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~  343 (426)
T d1hzua2         265 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD  343 (426)
T ss_dssp             EEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             CceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCC
Confidence            2222333446788888887654221    122223466778999999999999995       5568899999998874

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.5e-20  Score=161.17  Aligned_cols=286  Identities=10%  Similarity=0.082  Sum_probs=185.7

Q ss_pred             cccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEEEeccC
Q psy17342          9 SQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLASYHRN   88 (401)
Q Consensus         9 ~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~   88 (401)
                      ..++++.++.|++|++.....+                     .+.+.     ..+.+.|..++|+|||++|++++    
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l---------------------~~~~~-----~~~~~~v~~la~spDG~~L~v~~----   55 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGAL---------------------TLTQV-----VDVPGQVQPMVVSPDKRYLYVGV----   55 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCE---------------------EEEEE-----EECSSCCCCEEECTTSSEEEEEE----
T ss_pred             EEEECCCCCcEEEEEEcCCCCe---------------------EEEEE-----EcCCCCEeEEEEeCCCCEEEEEE----
Confidence            3477889999999998755421                     11111     23447799999999999998877    


Q ss_pred             CCCCCCCCcEEEEEeCcCCCCCceEEE--ecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCC
Q psy17342         89 KEAPNEPDGVCLIWNTKFKKTTPEFEF--FCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAH  166 (401)
Q Consensus        89 ~~~~~~~d~~v~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  166 (401)
                           ..++.|++|++.......+...  .....+..++|+|+++.+++++..++.|.+|+.........    .....+
T Consensus        56 -----~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~----~~~~~~  126 (333)
T d1ri6a_          56 -----RPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV----VDVVEG  126 (333)
T ss_dssp             -----TTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE----EEEECC
T ss_pred             -----CCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceec----ccccCC
Confidence                 2689999999986554443332  24556788999999854555444578899998876543322    122456


Q ss_pred             CCcEEEEEEeecCCceEEEEEeC-CCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEE-EEcCCceE
Q psy17342        167 THPVFCMSVIGTQNAHNLISISN-DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFV-VGCEDGNV  244 (401)
Q Consensus       167 ~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~i  244 (401)
                      ...+.++.+  ++++.+++.++. +..+.+|+...............  ..........++|+ +++..++ +....+..
T Consensus       127 ~~~~~~v~~--s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~g~~p~~i~~~-~~~~~~~~~~~~~~~~  201 (333)
T d1ri6a_         127 LDGCHSANI--SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV--TTVEGAGPRHMVFH-PNEQYAYCVNELNSSV  201 (333)
T ss_dssp             CTTBCCCEE--CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE--ECSTTCCEEEEEEC-TTSSEEEEEETTTTEE
T ss_pred             CccceEEEe--eecceeeeccccccceeeEEEeccCCcceeeeceee--eeecCCCccEEEEe-ccceeEEeeccccCce
Confidence            667788888  899998887765 45688999865322221111111  12234556789999 5666654 44566677


Q ss_pred             EEEeCCCCCCCce--eeec------CCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee---cCC
Q psy17342        245 YSACRHGNKAGNV--ECYE------GHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE---FRD  313 (401)
Q Consensus       245 ~~~~~~~~~~~~~--~~~~------~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~  313 (401)
                      .+++.........  ....      ........++++|+.     ...++++..++.+.+|++...........   ...
T Consensus       202 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (333)
T d1ri6a_         202 DVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG-----RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET  276 (333)
T ss_dssp             EEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS-----SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS
T ss_pred             EEEeecccccceeeeeeeeeeecCCCccccceeEEEeccc-----CceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCC
Confidence            7777654332211  1111      122345667788873     34555566688999999977654444332   345


Q ss_pred             ceEEEEECCCCCcEEEEEecCCEEEEEeCC
Q psy17342        314 YVMDVQWSPINPALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       314 ~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~  343 (401)
                      .+.+++|+|+|+++++++..++.|++|++.
T Consensus       277 ~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         277 QPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            677899999999666666677999999654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=2.3e-21  Score=167.13  Aligned_cols=294  Identities=8%  Similarity=-0.046  Sum_probs=183.9

Q ss_pred             hhhhccccccccccccccccccCCCCCCCCccccccccCCCCCCCCCceeeeeeeccccccccceEEEEecCCCCCeEEE
Q psy17342          4 AEAGESQISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGDEKSSTKLSFCRQFFDEKWSKNRNVTYMDWSTQHPELLLA   83 (401)
Q Consensus         4 ~~~~~~~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   83 (401)
                      ..-++++++++.++.|.+||+...+.+..+                           +..+...+.+++|+|||++++++
T Consensus         5 ~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~---------------------------~~~~~~~p~~l~~spDG~~l~v~   57 (346)
T d1jmxb_           5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSC---------------------------VMPDKFGPGTAMMAPDNRTAYVL   57 (346)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEE---------------------------ECSSCCSSCEEEECTTSSEEEEE
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCCEEEEE---------------------------EcCCCCCcceEEECCCCCEEEEE
Confidence            456789999999999999999766522111                           01233557899999999998777


Q ss_pred             EeccCCCCCCCCCcEEEEEeCcCCCCCceEEEec-----CCCeeEEEEeCCCCceEEEEe------------cCCeEEEE
Q psy17342         84 SYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC-----QSPVLSCCFAKFNPYLILGGT------------YSGQIVLW  146 (401)
Q Consensus        84 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~g~------------~dg~v~iw  146 (401)
                      +.         .++.|.+||+.+++.+.......     ...+..++|+|++. ++++++            .++.+.+|
T Consensus        58 ~~---------~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~-~l~v~~~~~~~~~~~~~~~~~~i~~~  127 (346)
T d1jmxb_          58 NN---------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVF  127 (346)
T ss_dssp             ET---------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred             EC---------CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCC-EEEEEecCCcceeeeeccCcceEEEE
Confidence            62         68999999999877665444321     12466899999985 444433            36778889


Q ss_pred             ECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccc---------c---
Q psy17342        147 DTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYN---------N---  214 (401)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~---------~---  214 (401)
                      +..++.......    .......+..+.+  ++++..+++ +  +.+.+|++.... ..........         .   
T Consensus       128 ~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~-~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  197 (346)
T d1jmxb_         128 STADGLEAKPVR----TFPMPRQVYLMRA--ADDGSLYVA-G--PDIYKMDVKTGK-YTVALPLRNWNRKGYSAPDVLYF  197 (346)
T ss_dssp             EGGGGGGBCCSE----EEECCSSCCCEEE--CTTSCEEEE-S--SSEEEECTTTCC-EEEEECSTTCCCTTBCCCBCCCC
T ss_pred             ecccceeeeEEE----eeeccCceEEEEe--cCCCEEEEe-C--CcceEEEccCCC-EEEEEecCCCccceEEeccccEE
Confidence            887765432211    1112233444555  556654443 2  457888876422 1111110000         0   


Q ss_pred             --ccCCccceE---EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe
Q psy17342        215 --KQTKNLAVL---SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS  289 (401)
Q Consensus       215 --~~~~~~~v~---~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~  289 (401)
                        .......+.   .....+.....++++..+..+.+|+...... ....+..|...+..+.++|+      +..++...
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  270 (346)
T d1jmxb_         198 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT-HTQEFADLTELYFTGLRSPK------DPNQIYGV  270 (346)
T ss_dssp             CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCE-EEEEEEECSSCEEEEEECSS------CTTEEEEE
T ss_pred             EEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCce-EEEEeecccceeEEEEEeCC------CCEEEEec
Confidence              000000111   0111112333344555566788888764332 23345567888888999888      45666655


Q ss_pred             CCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEe
Q psy17342        290 YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAI  354 (401)
Q Consensus       290 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  354 (401)
                       ++.|.+||..+++.+..+.. ...+.+++|+|||+ .+++++.|+.|++||..+.+.+..+..+
T Consensus       271 -~~~v~v~d~~~~~~~~~~~~-~~~~~~va~s~DG~-~l~v~~~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         271 -LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGD-KLYLGGTFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             -ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSS-CEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             -CCeEEEEECCCCcEEEEEcC-CCCEEEEEEcCCCC-EEEEEeCCCcEEEEECccCCEEEEEECC
Confidence             56899999999998887764 56789999999998 6788899999999999998877766543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=8.3e-20  Score=161.97  Aligned_cols=235  Identities=10%  Similarity=-0.005  Sum_probs=157.3

Q ss_pred             CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEE
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMS  174 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  174 (401)
                      .+|+|.|||.++++.+..+..+  ..+..++|+||| +++++++.|+.|++||+.+.+.......+ ....|.+.+.+..
T Consensus        40 d~g~v~v~D~~t~~v~~~~~~g--~~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t~~~~~~~~i~-~~~~~~~~~~s~~  115 (432)
T d1qksa2          40 DAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIK-IGSEARSIETSKM  115 (432)
T ss_dssp             TTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEE-CCSEEEEEEECCS
T ss_pred             CCCEEEEEECCCCcEEEEEeCC--CCeeEEEECCCC-CEEEEEcCCCCEEEEEeeCCCceEEEEEe-cCCCCCCeEEecc
Confidence            7999999999999888776544  469999999988 67888889999999999887653322211 1234555556666


Q ss_pred             EeecCCceEE-EEEeCCCcEEEeeccCCCCCccccccccc----cccCCccceEEEEeccCCCCe-EEEEcCCceEEEEe
Q psy17342        175 VIGTQNAHNL-ISISNDGRLCSWSLEMLSSPQETRDLQYN----NKQTKNLAVLSLAFPQNDVNN-FVVGCEDGNVYSAC  248 (401)
Q Consensus       175 ~~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~-l~~~~~d~~i~~~~  248 (401)
                      |  +|+|++| ++++.++.+++||..+.. +.........    ....+......+.++ +++.. +++...++.|.+|+
T Consensus       116 ~--SpDG~~l~vs~~~~~~v~i~d~~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~s-~dg~~~~vs~~~~~~i~~~d  191 (432)
T d1qksa2         116 E--GWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAILAS-HYRPEFIVNVKETGKILLVD  191 (432)
T ss_dssp             T--TCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEEEEC-SSSSEEEEEETTTTEEEEEE
T ss_pred             c--CCCCCEEEEEcCCCCeEEEEeCcccc-ceeeeccCCccccceeccCCCceeEEEEC-CCCCEEEEEEccCCeEEEEE
Confidence            6  8899876 678889999999987632 2222211110    012244566778889 56655 56677889999999


Q ss_pred             CCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC-CCeEEEEEeeCCCceEEEee-----cCCceEEEEECC
Q psy17342        249 RHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DWSVKLWNIKENKPVHSFNE-----FRDYVMDVQWSP  322 (401)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~-----~~~~v~~v~~~~  322 (401)
                      ....+...+..+ .+...+..+.++|+      ++++++++. ++.+.++|..+++.+..+..     |........+..
T Consensus       192 ~~~~~~~~~~~i-~~g~~~~~~~~spd------g~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  264 (432)
T d1qksa2         192 YTDLNNLKTTEI-SAERFLHDGGLDGS------HRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT  264 (432)
T ss_dssp             TTCSSEEEEEEE-ECCSSEEEEEECTT------SCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT
T ss_pred             ccCCCcceEEEE-cccCccccceECCC------CCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC
Confidence            875432223333 34566789999999      676666654 66899999988777666543     333444555555


Q ss_pred             CCCcEEEEEe-cCCEEEEEeCCCC
Q psy17342        323 INPALFATVE-VAGRVDLWNLNLD  345 (401)
Q Consensus       323 ~~~~~l~~~~-~d~~i~iwd~~~~  345 (401)
                      .+. +.++.. .++.+.+|+....
T Consensus       265 ~g~-~~~~~~lg~~~v~~~~~~~~  287 (432)
T d1qksa2         265 FGP-VWATSHMGDDSVALIGTDPE  287 (432)
T ss_dssp             TEE-EEEEEBSSSSEEEEEECCTT
T ss_pred             CCc-eecccccCCceEEecccccc
Confidence            554 344332 3678888876543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=2.4e-18  Score=149.89  Aligned_cols=280  Identities=9%  Similarity=-0.024  Sum_probs=178.6

Q ss_pred             EEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecC------CCeeEEEEeCCCCceEEE-EecCC
Q psy17342         69 TYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ------SPVLSCCFAKFNPYLILG-GTYSG  141 (401)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~~-g~~dg  141 (401)
                      ..++|+|||++|+++.........+..++.|.+||..+++.+.....+..      .....+.|+++++.+++. ...++
T Consensus        69 ~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~  148 (373)
T d2madh_          69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP  148 (373)
T ss_pred             ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCC
Confidence            36899999999999987666666666789999999998876655443311      123557888887554333 24456


Q ss_pred             eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCce-EEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        142 QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAH-NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       142 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      .+.+|+....+..          .+.....++.+  ++++. .+++.+.|+.+.+|+...............  ......
T Consensus       149 ~~~~~~~~~~~~~----------~~~~~~~~~~~--s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~--~~~~~~  214 (373)
T d2madh_         149 AVGLVVQGGSSDD----------QLLSSPTCYHI--HPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAML--TAAQNL  214 (373)
T ss_pred             ceEEeeccCCeEE----------EEeccceeEEE--ecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeecc--ccCccc
Confidence            7888888765432          33344567777  67765 456888999999999875322211111100  011222


Q ss_pred             ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEee
Q psy17342        221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIK  300 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  300 (401)
                      ....+.+. + ...++..+.++.+++|+..............+........+.|.      ....++.+.|+....    
T Consensus       215 ~~~~~~~~-~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~d~~~~~----  282 (373)
T d2madh_         215 LTQPAQAN-K-SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPG------GWQQVAYLKSSDGIY----  282 (373)
T ss_pred             eeeeEEEC-C-CceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccC------cceeeEEecCCCeEE----
Confidence            23334444 3 34556667788999998875543333444444455555555554      334444444443221    


Q ss_pred             CCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcE--EEEEec
Q psy17342        301 ENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQ--LCVGDE  378 (401)
Q Consensus       301 ~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--l~~~~~  378 (401)
                                        .+.+.+. .++....++.+.+||..+++.+..+    .+...+..++|+|||+.  +++++.
T Consensus       283 ------------------~~~~~~~-~~~~~~~~~~v~~~d~~t~~~~~~~----~~~~~~~~~a~spDG~~~l~vt~~~  339 (373)
T d2madh_         283 ------------------LLTSEQS-AWKLHAAAKEVTSVTGLVGQTSSQI----SLGHDVDAISVAQDGGPDLYALSAG  339 (373)
T ss_pred             ------------------EecCCCc-eEEeecCCCeEEEEECCCCcEEEEe----cCCCCeeEEEECCCCCEEEEEEeCC
Confidence                              1233443 5677778899999999988765443    45667899999999984  467899


Q ss_pred             CCcEEEEEeccCccceeeeee
Q psy17342        379 KGAITMFDVGEVGIACLKFIT  399 (401)
Q Consensus       379 dg~v~iw~~~~~~~~~l~~~~  399 (401)
                      |+.|++||+.++  +.++.+.
T Consensus       340 d~~v~v~D~~tg--~~~~~~~  358 (373)
T d2madh_         340 TEVLHIYDAGAG--DQDQSTV  358 (373)
T ss_pred             CCeEEEEECCCC--CEEEEEC
Confidence            999999999998  4566654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=2.2e-19  Score=155.37  Aligned_cols=263  Identities=11%  Similarity=0.028  Sum_probs=158.9

Q ss_pred             eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEec------CCCeeEEEEeCCCCceEEE-EecC
Q psy17342         68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFC------QSPVLSCCFAKFNPYLILG-GTYS  140 (401)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~-g~~d  140 (401)
                      +..++|+|||++|++++........+..++.|++||..+++.+.......      ......++|+|++..+++. .+.+
T Consensus        49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~  128 (355)
T d2bbkh_          49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA  128 (355)
T ss_dssp             SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred             CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCC
Confidence            44789999999998876332222333357899999999887666554431      2234678999988544332 2446


Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      ..+.+|+..+.+......      .+. ..  ..+  .......++.+.|+...++................  ...+..
T Consensus       129 ~~~~~~~~~~~~~~~~~~------~~~-~~--~~~--~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~--~~~~~~  195 (355)
T d2bbkh_         129 PAVGVVDLEGKAFKRMLD------VPD-CY--HIF--PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF--HPEDEF  195 (355)
T ss_dssp             CEEEEEETTTTEEEEEEE------CCS-EE--EEE--EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCC--SCTTSC
T ss_pred             ceeeeeecCCCcEeeEEe------cCC-cc--eEe--ecCCcceEEEcCCCCEEEEEecCCCeEEEEecccc--cceecc
Confidence            789999998876432211      111 11  111  11122233444555544444332111111000000  111223


Q ss_pred             ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCC----------ceeeeecCccCCCCCCCcEEEEEeC
Q psy17342        221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEG----------PVVGLSSHRAQGHIDFSHLYLTSSY  290 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~----------~v~~i~~~~~~~~~~~~~~l~s~~~  290 (401)
                      .+....+. +++..++.++.++.+++|++.......+.....+..          ....++++|+      +..++....
T Consensus       196 ~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d------~~~~~~~~~  268 (355)
T d2bbkh_         196 LINHPAYS-QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA------LDRIYLLVD  268 (355)
T ss_dssp             BCSCCEEE-TTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT------TTEEEEEEE
T ss_pred             eeeecccc-CCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCC------CCeEEEEec
Confidence            34455666 677888889999999999998655433333333322          2234666666      455444432


Q ss_pred             C----------CeEEEEEeeCCCceEEEeecCCceEEEEECCCCCc-EEEEEecCCEEEEEeCCCCCCCcce
Q psy17342        291 D----------WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPA-LFATVEVAGRVDLWNLNLDTEVPAT  351 (401)
Q Consensus       291 d----------~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~  351 (401)
                      +          ..|.+||..+++.+.++.. ...+.+++|+|+|+. ++++++.|+.|++||+++++.+..+
T Consensus       269 ~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i  339 (355)
T d2bbkh_         269 QRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV  339 (355)
T ss_dssp             ECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             cCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEE
Confidence            2          3799999999998888875 456889999999975 4667778999999999998865544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=2.3e-18  Score=148.87  Aligned_cols=301  Identities=7%  Similarity=-0.018  Sum_probs=177.6

Q ss_pred             eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEE---------Ee
Q psy17342         68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILG---------GT  138 (401)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~---------g~  138 (401)
                      +.-.+.+||++.+++.....     ...++.|.+||..+++.+.+...   +....++|+|+++.+.++         +.
T Consensus         4 ~~~~a~spdg~~~~v~~~~~-----~~~~~~v~v~D~~tg~~~~~~~~---g~~~~~a~SpDg~~l~v~~~~~~~~~~g~   75 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAH-----FAAVTQQFVIDGEAGRVIGMIDG---GFLPNPVVADDGSFIAHASTVFSRIARGE   75 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGG-----GCSSEEEEEEETTTTEEEEEEEE---CSSCEEEECTTSSCEEEEEEEEEETTEEE
T ss_pred             cEeEeeCCCCCEEEEEeccc-----CCCcCeEEEEECCCCcEEEEEEC---CCCCceEEcCCCCEEEEEeCCCccccccC
Confidence            34446789999987765211     12467899999998876655443   334479999999555443         34


Q ss_pred             cCCeEEEEECCCCCCCceeeccc-cccCCCCcEEEEEEeecCCceEEEEEe--CCCcEEEeeccCCCCCccccccccccc
Q psy17342        139 YSGQIVLWDTRVQKKTPVHRTPL-SVMAHTHPVFCMSVIGTQNAHNLISIS--NDGRLCSWSLEMLSSPQETRDLQYNNK  215 (401)
Q Consensus       139 ~dg~v~iw~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~  215 (401)
                      .++.|++||..+++......... ...........++|  ++++..++.++  .+..+.+|+..... ............
T Consensus        76 ~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~--s~dg~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  152 (355)
T d2bbkh_          76 RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL--TPDGKTLLFYQFSPAPAVGVVDLEGKA-FKRMLDVPDCYH  152 (355)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE--CTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECCSEEE
T ss_pred             CCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEE--ecCCCeeEEecCCCCceeeeeecCCCc-EeeEEecCCcce
Confidence            57899999999877543322110 00112223345778  89998887765  45678899987522 111111110000


Q ss_pred             cCCccceEEEEeccCCCCeEEEE-cCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeE
Q psy17342        216 QTKNLAVLSLAFPQNDVNNFVVG-CEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSV  294 (401)
Q Consensus       216 ~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i  294 (401)
                      .........+.++ +++..+++. ..++.+.+.+....       ...+...+....+.+.      +..++.++.++.+
T Consensus       153 ~~~~~~~~~~~~~-~dg~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  218 (355)
T d2bbkh_         153 IFPTAPDTFFMHC-RDGSLAKVAFGTEGTPEITHTEVF-------HPEDEFLINHPAYSQK------AGRLVWPTYTGKI  218 (355)
T ss_dssp             EEEEETTEEEEEE-TTSCEEEEECCSSSCCEEEECCCC-------SCTTSCBCSCCEEETT------TTEEEEEBTTSEE
T ss_pred             EeecCCcceEEEc-CCCCEEEEEecCCCeEEEEecccc-------cceecceeeeccccCC------CCeEEEecCCCeE
Confidence            0001112233444 343333332 22222333332211       1123344555666665      5778888999999


Q ss_pred             EEEEeeCCCceE--EEeec----------CCceEEEEECCCCCcEEEEEecC---------CEEEEEeCCCCCCCcceEE
Q psy17342        295 KLWNIKENKPVH--SFNEF----------RDYVMDVQWSPINPALFATVEVA---------GRVDLWNLNLDTEVPATSA  353 (401)
Q Consensus       295 ~iwd~~~~~~~~--~~~~~----------~~~v~~v~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~  353 (401)
                      ++|++..++...  ....+          ......++++|++..+++.....         +.|.+||..+++.+..+. 
T Consensus       219 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-  297 (355)
T d2bbkh_         219 HQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-  297 (355)
T ss_dssp             EEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-
T ss_pred             EEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-
Confidence            999998765422  11111          12234588999997544443322         479999999887655543 


Q ss_pred             eecCCCCeEEEEecCCCc--EEEEEecCCcEEEEEeccCccceeeeee
Q psy17342        354 IVEGAPALSRVTWTPNGT--QLCVGDEKGAITMFDVGEVGIACLKFIT  399 (401)
Q Consensus       354 ~~~~~~~v~~~~~s~~g~--~l~~~~~dg~v~iw~~~~~~~~~l~~~~  399 (401)
                         ....+.+++|+|||+  ++++++.|+.|++||++++  +.++++.
T Consensus       298 ---~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg--~~~~~i~  340 (355)
T d2bbkh_         298 ---MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG--EELRSVN  340 (355)
T ss_dssp             ---EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC--CEEEEEC
T ss_pred             ---CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC--CEEEEEe
Confidence               234578999999997  4566778999999999998  4566654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.70  E-value=9e-15  Score=126.86  Aligned_cols=244  Identities=6%  Similarity=-0.077  Sum_probs=152.9

Q ss_pred             eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEE
Q psy17342         68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWD  147 (401)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~  147 (401)
                      ...+.|+|+++.++...+        ..++.+.+|+....+..     .+.....++.++|++...+++.+.|+.+.+|+
T Consensus       127 ~~~~~~s~dg~~~~v~~~--------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~  193 (373)
T d2madh_         127 SWMNANTPNNADLLFFQF--------AAGPAVGLVVQGGSSDD-----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTD  193 (373)
T ss_pred             CCcEEEEeCCCcEEEEEE--------cCCCceEEeeccCCeEE-----EEeccceeEEEecCCCcEEEEEcCCCeEEEEE
Confidence            345889999998887774        24678899998754422     33455678999999988888999999999999


Q ss_pred             CCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEe
Q psy17342        148 TRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF  227 (401)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  227 (401)
                      ..................+......+.+  .+++ .++..+.++.+.+|+..... .......     ..+........+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~v~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~  264 (373)
T d2madh_         194 HAGGAAGAGLVGAMLTAAQNLLTQPAQA--NKSG-RIVWPVYSGKILQADISAAG-ATNKAPI-----DALSGGRKADTW  264 (373)
T ss_pred             cCCceeeEEEeeeccccCccceeeeEEE--CCCc-eEEEecCCceEEEEEcCCCe-EEEEEee-----ccccCcEEeeee
Confidence            9887654332211111122222333333  4444 45566788899999986421 1111000     112222233333


Q ss_pred             ccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEE
Q psy17342        228 PQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHS  307 (401)
Q Consensus       228 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  307 (401)
                      . +.....+..+.++...                        ..+.+.      +..+++...++.+.+||..+++.+..
T Consensus       265 ~-~~~~~~~~~~~d~~~~------------------------~~~~~~------~~~~~~~~~~~~v~~~d~~t~~~~~~  313 (373)
T d2madh_         265 R-PGGWQQVAYLKSSDGI------------------------YLLTSE------QSAWKLHAAAKEVTSVTGLVGQTSSQ  313 (373)
T ss_pred             c-cCcceeeEEecCCCeE------------------------EEecCC------CceEEeecCCCeEEEEECCCCcEEEE
Confidence            3 2222222222222211                        111122      46677778889999999999998888


Q ss_pred             EeecCCceEEEEECCCCCc-EEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecC
Q psy17342        308 FNEFRDYVMDVQWSPINPA-LFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTP  368 (401)
Q Consensus       308 ~~~~~~~v~~v~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~  368 (401)
                      +.. ...+.+++|+|||+. ++++++.|+.|++||+.+++.+..+.   .+....+.+++.+
T Consensus       314 ~~~-~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~---~~g~~P~~l~~~~  371 (373)
T d2madh_         314 ISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV---ELGSGPQVLSVMN  371 (373)
T ss_pred             ecC-CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC---CCCCCCcEEEEec
Confidence            764 667899999999975 45688899999999999998765543   3344555666543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=1.8e-16  Score=137.66  Aligned_cols=261  Identities=8%  Similarity=-0.040  Sum_probs=162.2

Q ss_pred             EEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecC------CCeeEEEEeCCCCceEEEEecCCe
Q psy17342         69 TYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQ------SPVLSCCFAKFNPYLILGGTYSGQ  142 (401)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~~g~~dg~  142 (401)
                      ..++|+|||+.|++++........++.++.|.+||..+++.+.....+..      .....++|+||++.++++...++.
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~  147 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA  147 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCe
Confidence            35899999999999886666666677899999999998877666654321      234568999999666655556899


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccce
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAV  222 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v  222 (401)
                      +.+||+.+.+......      .+....  + +  ......++..+.||.+.++++..............  ...+...+
T Consensus       148 v~~~d~~~~~~~~~~~------~~~~~~--~-~--~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  214 (368)
T d1mdah_         148 AAGLSVPGASDDQLTK------SASCFH--I-H--PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC--TGAQNCSS  214 (368)
T ss_dssp             EEEEEETTTEEEEEEE------CSSCCC--C-E--EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS--CTTSCBCS
T ss_pred             EEEEECCCCcEeEEee------ccCcce--E-c--cCCCceEEEEcCCCCEEEEEecCCceeeeeeeccc--ccccccce
Confidence            9999998876543221      122111  1 1  12334567778888888888765332221111111  22233344


Q ss_pred             EEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCC----------CceeeeecCccCCCCCCCcEEEEEeCC-
Q psy17342        223 LSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHE----------GPVVGLSSHRAQGHIDFSHLYLTSSYD-  291 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~----------~~v~~i~~~~~~~~~~~~~~l~s~~~d-  291 (401)
                      ....+. +++..+.  ...+.+++++..............+.          .....++++|..     +.+++....+ 
T Consensus       215 ~~~~~~-~~g~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~-----~~~~v~~~~~~  286 (368)
T d1mdah_         215 QAAQAN-YPGMLVW--AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT-----DGIMILTVEHS  286 (368)
T ss_dssp             CCEEET-TTTEEEE--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT-----TEEEEEEEECS
T ss_pred             eecccc-cCcEEEE--ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCC-----CEEEEEecCCC
Confidence            455555 4444433  33455666665443322211111111          122346666663     2333333222 


Q ss_pred             -------CeEEEEEeeCCCceEEEeecCCceEEEEECCCCCc-EEEEEecCCEEEEEeCCCCCCCcce
Q psy17342        292 -------WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPA-LFATVEVAGRVDLWNLNLDTEVPAT  351 (401)
Q Consensus       292 -------~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~  351 (401)
                             ..|.+||..+++.+.++.. ...+.+++|+|+|+. +++++..|+.|++||..+++.+..+
T Consensus       287 ~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i  353 (368)
T d1mdah_         287 RSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             SCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred             ceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence                   3599999999998887775 457889999999974 5677788999999999998866554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.65  E-value=7.1e-17  Score=139.42  Aligned_cols=346  Identities=11%  Similarity=0.001  Sum_probs=204.6

Q ss_pred             ccccccccccccccccCCCCCCCCccccccccCCC-----CCCCCCc-eeeeeeeccccccccceEEEEecCCCCCeEEE
Q psy17342         10 QISGTLHGLQADWNEEGDPGLPQLPQDLQFDMTGD-----EKSSTKL-SFCRQFFDEKWSKNRNVTYMDWSTQHPELLLA   83 (401)
Q Consensus        10 ~~~g~~~g~~~vw~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   83 (401)
                      .+||+.+|.++||++...+.+..|+-   |...+.     ..++..+ .....+ ..--.|........++|||++|++.
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpV---fspd~~~g~g~~~es~~vl~~~~~~-~~gd~hhP~~s~t~gtpDGr~lfV~   89 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPV---FNVDSATGWGITNESKEILGGDQQY-LNGDCHHPHISMTDGRYDGKYLFIN   89 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECS---SSBCTTTCTTTSHHHHHHHCSSSCC-SCCCBCCCEEEEETTEEEEEEEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEe---EcCCCCEEEEECCccceEEeccccc-ccCcccCCCcceecccCCCCEEEEE
Confidence            57888999999999987776544431   111111     0000000 000000 0011244567777789999999888


Q ss_pred             EeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeE------------------EE
Q psy17342         84 SYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQI------------------VL  145 (401)
Q Consensus        84 ~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v------------------~i  145 (401)
                      ..         .+++|.++|+++.+............+..++|+|++....+++..+..+                  ..
T Consensus        90 d~---------~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~  160 (441)
T d1qnia2          90 DK---------ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTA  160 (441)
T ss_dssp             ET---------TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEE
T ss_pred             cC---------CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEe
Confidence            84         7899999999988776666666678899999999885533333333333                  33


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC-cEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG-RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS  224 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (401)
                      +|..+.+....      .. -.+....+.+  +++|.++++.+.+. .+..++..+.. ........        .....
T Consensus       161 iD~~t~~v~~q------I~-v~~~p~~v~~--spdGk~a~vt~~nse~~~~id~~t~~-~~d~i~v~--------n~p~~  222 (441)
T d1qnia2         161 IDAETMDVAWQ------VI-VDGNLDNTDA--DYTGKYATSTCYNSERAVDLAGTMRN-DRDWVVVF--------NVERI  222 (441)
T ss_dssp             EETTTCSEEEE------EE-ESSCCCCEEE--CSSSSEEEEEESCTTCCSSHHHHTCS-SBCEEEEE--------EHHHH
T ss_pred             ecCccceeeEE------Ee-cCCCccceEE--CCCCCEEEEEecCCCceEEEeccCcc-eEEEEEeC--------Cccce
Confidence            55554432211      01 1234567777  89999888877654 23333332211 11111000        01122


Q ss_pred             EEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEE-EEEeCCCeEEEEEeeCCC
Q psy17342        225 LAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLY-LTSSYDWSVKLWNIKENK  303 (401)
Q Consensus       225 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~  303 (401)
                      +++. ++++++.++ .++.+.+++...  ...+..+..... ...+.++|+      ++++ +++..+++|.+||+++.+
T Consensus       223 ~~~~-~dGk~~~v~-~~~v~vvd~~~~--~~v~~~IPvgks-PhGv~vSPD------Gkyl~~~~~~~~tvsv~d~~k~~  291 (441)
T d1qnia2         223 AAAV-KAGNFKTIG-DSKVPVVDGRGE--SEFTRYIPVPKN-PHGLNTSPD------GKYFIANGKLSPTVSVIAIDKLD  291 (441)
T ss_dssp             HHHH-HTTCCBCCT-TCCCCEEECSSS--CSSEEEECCBSS-CCCEEECTT------SCEEEEECTTSSBEEEEEGGGHH
T ss_pred             EEEe-cCCCEEEeC-CCCcEEEEcccC--CceEEEEeCCCC-ccCceECCC------CCEEEEeCCcCCcEEEEEeehhh
Confidence            3445 577776654 356667766543  235566665554 478999999      6655 556679999999986521


Q ss_pred             c--------eEEEeec---CCceEEEEECCCCCcEEEEEecCCEEEEEeCCC------CCCC-cceEEe-----ecCCCC
Q psy17342        304 P--------VHSFNEF---RDYVMDVQWSPINPALFATVEVAGRVDLWNLNL------DTEV-PATSAI-----VEGAPA  360 (401)
Q Consensus       304 ~--------~~~~~~~---~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~------~~~~-~~~~~~-----~~~~~~  360 (401)
                      .        ...+.++   .-.....+|.++|. .+.+...|.+|..|++..      +... +.....     .+|...
T Consensus       292 ~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~-~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~  370 (441)
T d1qnia2         292 DLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN-AYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHA  370 (441)
T ss_dssp             HHTTTSSCGGGGEEECCBCCSCEEEEEECSSSE-EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEE
T ss_pred             hHhhccCCcceEEEeecccccCcccceecCCce-EEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCcc
Confidence            1        1111111   11245578999995 788889999999999742      1111 122111     345555


Q ss_pred             eEEEEecCCCcEEEEE---ecCC----------cEEEEEeccCccceeeee
Q psy17342        361 LSRVTWTPNGTQLCVG---DEKG----------AITMFDVGEVGIACLKFI  398 (401)
Q Consensus       361 v~~~~~s~~g~~l~~~---~~dg----------~v~iw~~~~~~~~~l~~~  398 (401)
                      +.+.+++|||++|+++   +.|.          .-++.|+...+++.+.-.
T Consensus       371 ~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~~~~~~~~  421 (441)
T d1qnia2         371 SLTESRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISGEEMKLVHDG  421 (441)
T ss_dssp             TTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSSSSCEEEEEE
T ss_pred             ccccccCCCCcEEEecCccccccCcCCCCCCCccceeEEecCCeEEEEecC
Confidence            6667899999999999   5553          457888887665555443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.64  E-value=7.6e-14  Score=124.97  Aligned_cols=319  Identities=8%  Similarity=-0.061  Sum_probs=167.7

Q ss_pred             cccceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeE
Q psy17342         64 KNRNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQI  143 (401)
Q Consensus        64 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v  143 (401)
                      +...|.++.|||||++|+.++-.. .....+.++.+.|||+++++...  ...+...+..+.|||+|. .+|.. .++.+
T Consensus        60 ~~~~i~~~~~SpDg~~i~~~~~~~-~~~r~s~~~~~~l~d~~~~~~~~--l~~~~~~~~~~~~SPDG~-~ia~~-~~~~l  134 (470)
T d2bgra1          60 FGHSINDYSISPDGQFILLEYNYV-KQWRHSYTASYDIYDLNKRQLIT--EERIPNNTQWVTWSPVGH-KLAYV-WNNDI  134 (470)
T ss_dssp             SSSCCCEEEECTTSSEEEEEEEEE-ECSSSCEEEEEEEEETTTTEECC--SSCCCTTEEEEEECSSTT-CEEEE-ETTEE
T ss_pred             ccCccceeEECCCCCEEEEEECCc-ceeeeccCceEEEEECCCCcccc--cccCCccccccccccCcc-eeeEe-ecccc
Confidence            456799999999999999876211 11112346789999999776443  234578899999999994 55554 57899


Q ss_pred             EEEECCCCCCCceeecc---cccc---------CCCCcEEEEEEeecCCceEEEEEeCCCc-EEEeeccCCC---CCc-c
Q psy17342        144 VLWDTRVQKKTPVHRTP---LSVM---------AHTHPVFCMSVIGTQNAHNLISISNDGR-LCSWSLEMLS---SPQ-E  206 (401)
Q Consensus       144 ~iw~~~~~~~~~~~~~~---~~~~---------~~~~~v~~~~~~~~~~~~~l~s~~~dg~-i~~wd~~~~~---~~~-~  206 (401)
                      .+|+..++.........   ..+.         ...+....+.|  +|+|..|+....|.+ +..|.+....   ... .
T Consensus       135 ~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~w--SPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~  212 (470)
T d2bgra1         135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPK  212 (470)
T ss_dssp             EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCE
T ss_pred             eEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEE--CCCCCccceeEecCCcCceEEEEeeccCCCCCCe
Confidence            99999877643221100   0000         12233456778  999999999876543 4444332100   000 0


Q ss_pred             ccc-------------------cccc---------------cccCCccceEEEEeccCCCCeEEEE-cC--C-ceEEEEe
Q psy17342        207 TRD-------------------LQYN---------------NKQTKNLAVLSLAFPQNDVNNFVVG-CE--D-GNVYSAC  248 (401)
Q Consensus       207 ~~~-------------------~~~~---------------~~~~~~~~v~~~~~~~~~~~~l~~~-~~--d-~~i~~~~  248 (401)
                      ...                   +...               ........+..+.|. +++..++.. ..  + ..+.+++
T Consensus       213 ~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~~~~~~~~~r~~~~~~~~~~~  291 (470)
T d2bgra1         213 TVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWA-TQERISLQWLRRIQNYSVMDICD  291 (470)
T ss_dssp             EEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE-ETTEEEEEEEESSTTEEEEEEEE
T ss_pred             eeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEc-CCCceeEEEeeccCCceEEEEEE
Confidence            000                   0000               000122334566676 445444432 11  1 1234444


Q ss_pred             CCCCCCCceeee-------------cCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC-CCceEEEeecCCc
Q psy17342        249 RHGNKAGNVECY-------------EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE-NKPVHSFNEFRDY  314 (401)
Q Consensus       249 ~~~~~~~~~~~~-------------~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~  314 (401)
                      ............             ..|........+.+.      +.+++.+..||...||.+.. +.....+..+...
T Consensus       292 ~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~  365 (470)
T d2bgra1         292 YDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGN------SFYKIISNEEGYRHICYFQIDKKDCTFITKGTWE  365 (470)
T ss_dssp             EETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSS------EEEEEEECTTSCEEEEEEETTCSCCEESCCSSSC
T ss_pred             ecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCC------CcEEEEeccCcCceeEEEeccCCceeeeccCCee
Confidence            332222111110             011111112222222      34456666787766665533 4444455545566


Q ss_pred             eEEEEECCCCCcEEEEEecCC----EEEEEe--CCCCCCCcceEE-eecCCCCeEEEEecCCCcEEE---EEecCCcEEE
Q psy17342        315 VMDVQWSPINPALFATVEVAG----RVDLWN--LNLDTEVPATSA-IVEGAPALSRVTWTPNGTQLC---VGDEKGAITM  384 (401)
Q Consensus       315 v~~v~~~~~~~~~l~~~~~d~----~i~iwd--~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~---~~~~dg~v~i  384 (401)
                      |..+ ++++++.+++++..++    .-.||.  +..+.....+.. ...+...+..++|||||++++   ++...-.+.+
T Consensus       366 v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l  444 (470)
T d2bgra1         366 VIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTL  444 (470)
T ss_dssp             EEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEE
T ss_pred             EEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEE
Confidence            7766 4444444555554332    223444  443332222111 124556789999999999977   3333446899


Q ss_pred             EEeccCccceeeeee
Q psy17342        385 FDVGEVGIACLKFIT  399 (401)
Q Consensus       385 w~~~~~~~~~l~~~~  399 (401)
                      |+..++  ++++.|.
T Consensus       445 ~~~~~g--~~v~~le  457 (470)
T d2bgra1         445 HSSVND--KGLRVLE  457 (470)
T ss_dssp             EETTTT--EEEEEEE
T ss_pred             EECCCC--CEEEEEe
Confidence            999888  5565553

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=9.5e-15  Score=126.57  Aligned_cols=299  Identities=6%  Similarity=-0.072  Sum_probs=171.9

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEE--------
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGG--------  137 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g--------  137 (401)
                      +....++..++++.....-..     ....+..|.+||..+++.+.....+.   ...++|+|++..+.++.        
T Consensus        20 g~~~~~a~~~~~~~~~v~~~~-----~~~g~~~~~~~d~~~~~~~~~~~~~~---~~~~a~spDg~~i~~~~~~~~~~~~   91 (368)
T d1mdah_          20 GSSCDHGPGAISRRSHITLPA-----YFAGTTENWVSCAGCGVTLGHSLGAF---LSLAVAGHSGSDFALASTSFARSAK   91 (368)
T ss_dssp             CCCBCCCCCCCTTEEEEEECT-----TTCSSEEEEEEETTTTEEEEEEEECT---TCEEEECTTSSCEEEEEEEETTTTS
T ss_pred             CCccccccCCCCcceeEEeec-----cCCCcceEEEEeCCCCcEEEEEeCCC---CCcceECCCCCEEEEEcccCccccc
Confidence            445555677888764333210     11134567788988877666554432   23589999985443332        


Q ss_pred             -ecCCeEEEEECCCCCCCceeeccccc-cCCCCcEEEEEEeecCCceEEEEEe-CCCcEEEeeccCCCCCcccccccccc
Q psy17342        138 -TYSGQIVLWDTRVQKKTPVHRTPLSV-MAHTHPVFCMSVIGTQNAHNLISIS-NDGRLCSWSLEMLSSPQETRDLQYNN  214 (401)
Q Consensus       138 -~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~~  214 (401)
                       ..++.|.+||..+.+.......+... .........++|  +++|++++++. .++.+.+||+.... .........  
T Consensus        92 g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~--SpDGk~l~va~~~~~~v~~~d~~~~~-~~~~~~~~~--  166 (368)
T d1mdah_          92 GKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGAS-DDQLTKSAS--  166 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTE-EEEEEECSS--
T ss_pred             cccCCeEEEEECCCCcEeeeecCCccceecccCCccceEE--CCCCCEEEEEeCCCCeEEEEECCCCc-EeEEeeccC--
Confidence             34778999999887654322211000 011122235788  99999998776 57899999997622 111111111  


Q ss_pred             ccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCce----eeecCCCCceeeeecCccCCCCCCCcEEEEEeC
Q psy17342        215 KQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNV----ECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY  290 (401)
Q Consensus       215 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~----~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~  290 (401)
                           .    ..+.|.....++..+.||.+.+++.........    ..+..+...+....+.+.      +..+.+  .
T Consensus       167 -----~----~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~~~--~  229 (368)
T d1mdah_         167 -----C----FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP------GMLVWA--V  229 (368)
T ss_dssp             -----C----CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT------TEEEEC--B
T ss_pred             -----c----ceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccC------cEEEEe--c
Confidence                 0    011212344555666777777776654322111    122234444455566655      344433  3


Q ss_pred             CCeEEEEEeeCCCceEEEee------------cCCceEEEEECCCCCcEEEEEecC--------CEEEEEeCCCCCCCcc
Q psy17342        291 DWSVKLWNIKENKPVHSFNE------------FRDYVMDVQWSPINPALFATVEVA--------GRVDLWNLNLDTEVPA  350 (401)
Q Consensus       291 d~~i~iwd~~~~~~~~~~~~------------~~~~v~~v~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~  350 (401)
                      ++.+.+++...++.......            .......++++|++..+++....+        ..|.+||..+++.+..
T Consensus       230 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~  309 (368)
T d1mdah_         230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP  309 (368)
T ss_dssp             SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC
T ss_pred             CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEE
Confidence            45666777655443322110            011223578899887554443322        3699999999876655


Q ss_pred             eEEeecCCCCeEEEEecCCCcE--EEEEecCCcEEEEEeccCccceeeeeec
Q psy17342        351 TSAIVEGAPALSRVTWTPNGTQ--LCVGDEKGAITMFDVGEVGIACLKFITS  400 (401)
Q Consensus       351 ~~~~~~~~~~v~~~~~s~~g~~--l~~~~~dg~v~iw~~~~~~~~~l~~~~~  400 (401)
                      +.    ....+..++|+|||+.  ++++..++.|++||..++  +.+++++.
T Consensus       310 ~~----~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg--k~~~~i~~  355 (368)
T d1mdah_         310 IS----NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD--QDQSSVEL  355 (368)
T ss_dssp             CE----EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC--EEEEECCC
T ss_pred             ec----CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC--CEEEEEEC
Confidence            43    2345888999999973  456677899999999998  56666654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.39  E-value=3.1e-10  Score=97.20  Aligned_cols=296  Identities=8%  Similarity=0.033  Sum_probs=158.5

Q ss_pred             CeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCce----EEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCC
Q psy17342         79 ELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPE----FEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKT  154 (401)
Q Consensus        79 ~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~  154 (401)
                      .|+.|+|.        ..+.|.++..+.....-.    ........+.-|+|+|++ ++|++.. .+.+..|.+......
T Consensus         4 ~l~vGtyt--------~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~-~~ly~~~-~~~~~~~~i~~~~~~   73 (365)
T d1jofa_           4 HLMIGTWT--------PPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHER-KNIYGAA-MKKWSSFAVKSPTEI   73 (365)
T ss_dssp             EEEEEESS--------SSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTS-SEEEEEE-BTEEEEEEEEETTEE
T ss_pred             EEEEEeec--------CCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCC-CEEEEEe-CCcEEEEEEeCCCCe
Confidence            46777752        355676666553322111    112234556789999987 5665554 567888887654322


Q ss_pred             ceeeccccccCCCCcEEEEEEeecCCceEE--EEEe-CCCcEEEeeccCCCCCcccccccc---------ccccCCccce
Q psy17342        155 PVHRTPLSVMAHTHPVFCMSVIGTQNAHNL--ISIS-NDGRLCSWSLEMLSSPQETRDLQY---------NNKQTKNLAV  222 (401)
Q Consensus       155 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l--~s~~-~dg~i~~wd~~~~~~~~~~~~~~~---------~~~~~~~~~v  222 (401)
                      .....    .........+.+  +++++.+  +++. ..+.+..+.+...........+..         .........+
T Consensus        74 ~~~~~----~~~~~~p~~v~~--~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~  147 (365)
T d1jofa_          74 VHEAS----HPIGGHPRANDA--DTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGI  147 (365)
T ss_dssp             EEEEE----EECCSSGGGGCT--TSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCE
T ss_pred             EEEee----ecCCCCcEEEEE--CCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcc
Confidence            11100    001112223334  5566533  2221 234444443322111000000000         0001122346


Q ss_pred             EEEEeccCCCCeEEEEcC-CceEEEEeCCCCCC-Cceeee--cCCCCceeeeecCccCCCCCCCcEE-EEEeCCCeEEEE
Q psy17342        223 LSLAFPQNDVNNFVVGCE-DGNVYSACRHGNKA-GNVECY--EGHEGPVVGLSSHRAQGHIDFSHLY-LTSSYDWSVKLW  297 (401)
Q Consensus       223 ~~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~-~~~~~~--~~~~~~v~~i~~~~~~~~~~~~~~l-~s~~~d~~i~iw  297 (401)
                      .++.|+ |++++++++.. ...|++|+...... ......  .........+.|+|+      ++++ ++...+++|.+|
T Consensus       148 h~v~~s-PdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pd------g~~~yv~~e~~~~V~v~  220 (365)
T d1jofa_         148 HGMVFD-PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT------GNYLYALMEAGNRICEY  220 (365)
T ss_dssp             EEEEEC-TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT------SSEEEEEETTTTEEEEE
T ss_pred             eEEEEC-CCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCC------CceEEEeccCCCEEEEE
Confidence            789999 89988777654 45788887543221 111111  123455788999999      5655 555568999999


Q ss_pred             EeeCCCceEEEee-------------------cCCceEEEEECCCCCcEEEEEecCC-----EEEEEeCCCCCCCcceEE
Q psy17342        298 NIKENKPVHSFNE-------------------FRDYVMDVQWSPINPALFATVEVAG-----RVDLWNLNLDTEVPATSA  353 (401)
Q Consensus       298 d~~~~~~~~~~~~-------------------~~~~v~~v~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~  353 (401)
                      ++..++.......                   +......+.++|+|+.++++...+.     .|..|++.....+.....
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~  300 (365)
T d1jofa_         221 VIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF  300 (365)
T ss_dssp             EECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE
T ss_pred             EecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeE
Confidence            9976543322111                   1123567899999986555543333     377777765443322111


Q ss_pred             e---ecCCCCeEEEEecC-CCcEEEEE-ecCCcEEEEEeccCccceeee
Q psy17342        354 I---VEGAPALSRVTWTP-NGTQLCVG-DEKGAITMFDVGEVGIACLKF  397 (401)
Q Consensus       354 ~---~~~~~~v~~~~~s~-~g~~l~~~-~~dg~v~iw~~~~~~~~~l~~  397 (401)
                      .   .........++++| +|++|+++ ..++.|.+|++....+..+..
T Consensus       301 ~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~~~  349 (365)
T d1jofa_         301 LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVAR  349 (365)
T ss_dssp             EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEEEE
T ss_pred             eeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEEEE
Confidence            1   11234567799998 79988766 567899999998765444433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.38  E-value=5.3e-13  Score=115.01  Aligned_cols=266  Identities=6%  Similarity=-0.011  Sum_probs=165.0

Q ss_pred             CCCcEEEEEeCcCCCCCceEEEe-----------------------------cCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342         94 EPDGVCLIWNTKFKKTTPEFEFF-----------------------------CQSPVLSCCFAKFNPYLILGGTYSGQIV  144 (401)
Q Consensus        94 ~~d~~v~iwd~~~~~~~~~~~~~-----------------------------~~~~v~~~~~~~~~~~~l~~g~~dg~v~  144 (401)
                      +.+|.|.+|++.+++.+.++..-                             |........+.|||+.++++...++.|.
T Consensus        18 g~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVa   97 (441)
T d1qnia2          18 GHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVA   97 (441)
T ss_dssp             BTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTTEEE
T ss_pred             CCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCCCEEE
Confidence            37999999999776544332110                             1122344445788866667777889999


Q ss_pred             EEECCCCCCCceeeccccccCCCCcEEEEEEeecCCce--EEEEEeCCCcE------------------EEeeccCCCCC
Q psy17342        145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAH--NLISISNDGRL------------------CSWSLEMLSSP  204 (401)
Q Consensus       145 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~s~~~dg~i------------------~~wd~~~~~~~  204 (401)
                      ++|+++.+...+..     ..+...+..++|  +++++  +++..+.+ .+                  ..+|..+..  
T Consensus        98 vIDl~t~k~~~ii~-----iP~g~gphgi~~--spdg~t~YV~~~~~~-~v~~~~dg~~~~~~~~~~~~~~iD~~t~~--  167 (441)
T d1qnia2          98 RIRLDIMKTDKITH-----IPNVQAIHGLRL--QKVPKTNYVFCNAEF-VIPQPNDGTDFSLDNSYTMFTAIDAETMD--  167 (441)
T ss_dssp             EEETTTTEEEEEEE-----CTTCCCEEEEEE--CCSSBCCEEEEEECS-CEESSCSSSCCCGGGEEEEEEEEETTTCS--
T ss_pred             EEECCCCcEeeEEe-----cCCCCCccceEE--eccCCEEEEEeccCC-cccccCcccccccccccceEEeecCccce--
Confidence            99999877543322     245678889999  77877  44444433 22                  224433211  


Q ss_pred             ccccccccccccCCccceEEEEeccCCCCeEEEEcCCce-EEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCc
Q psy17342        205 QETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGN-VYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSH  283 (401)
Q Consensus       205 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~  283 (401)
                       ...++.      -...+..+.++ ++++++++++.+.. +..++.....  ........ ..-..+.+.|+      ++
T Consensus       168 -v~~qI~------v~~~p~~v~~s-pdGk~a~vt~~nse~~~~id~~t~~--~~d~i~v~-n~p~~~~~~~d------Gk  230 (441)
T d1qnia2         168 -VAWQVI------VDGNLDNTDAD-YTGKYATSTCYNSERAVDLAGTMRN--DRDWVVVF-NVERIAAAVKA------GN  230 (441)
T ss_dssp             -EEEEEE------ESSCCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCS--SBCEEEEE-EHHHHHHHHHT------TC
T ss_pred             -eeEEEe------cCCCccceEEC-CCCCEEEEEecCCCceEEEeccCcc--eEEEEEeC-CccceEEEecC------CC
Confidence             111111      12346778888 78888887776532 3223322111  11111111 11234566676      56


Q ss_pred             EEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC--------CcceEEee
Q psy17342        284 LYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE--------VPATSAIV  355 (401)
Q Consensus       284 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~  355 (401)
                      ++..+ .++.+.+++....+.+..+..... ...+.++|+|+++++++..+++|.+||+.+...        ...+....
T Consensus       231 ~~~v~-~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~  308 (441)
T d1qnia2         231 FKTIG-DSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEP  308 (441)
T ss_dssp             CBCCT-TCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECC
T ss_pred             EEEeC-CCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeec
Confidence            65544 477888888777778888877544 578999999998888899999999999865221        11111111


Q ss_pred             cCCCCeEEEEecCCCcEEEEEecCCcEEEEEec
Q psy17342        356 EGAPALSRVTWTPNGTQLCVGDEKGAITMFDVG  388 (401)
Q Consensus       356 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~  388 (401)
                      ...-.....+|+++|..+.+...|..|..|++.
T Consensus       309 ~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         309 ELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             BCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             ccccCcccceecCCceEEEcccccceEEEeccc
Confidence            122234667899999999999999999999985

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.32  E-value=4.7e-10  Score=96.07  Aligned_cols=258  Identities=7%  Similarity=-0.072  Sum_probs=150.1

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEE-EecCCCeeEEEEeCCCCce-EEEEe-cCCe
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFE-FFCQSPVLSCCFAKFNPYL-ILGGT-YSGQ  142 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~-l~~g~-~dg~  142 (401)
                      ..+.-|+|+|+++.|.++.           .+.+..|.+.......... .........+++++++..+ +++.. ..+.
T Consensus        40 ~~~s~la~s~d~~~ly~~~-----------~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~  108 (365)
T d1jofa_          40 EPISWMTFDHERKNIYGAA-----------MKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYA  108 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEE-----------BTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCC
T ss_pred             CCCCEEEEcCCCCEEEEEe-----------CCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCE
Confidence            4567799999999988877           5678888776432222221 2223456677888877433 33321 2355


Q ss_pred             EEEEECCCCCCCc-ee----------eccccccCCCCcEEEEEEeecCCceEEEEEeC-CCcEEEeeccCCCCCcccccc
Q psy17342        143 IVLWDTRVQKKTP-VH----------RTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-DGRLCSWSLEMLSSPQETRDL  210 (401)
Q Consensus       143 v~iw~~~~~~~~~-~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~  210 (401)
                      |..+.+....... ..          ............+.++.|  +|+++++++++. ...|.+|+..........-..
T Consensus       109 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~--sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~  186 (365)
T d1jofa_         109 VYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVF--DPTETYLYSADLTANKLWTHRKLASGEVELVGSV  186 (365)
T ss_dssp             EEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred             EEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEE--CCCCCEEEEeeCCCCEEEEEEccCCCceeeccce
Confidence            5555443211100 00          000001122334788999  999998888764 447888876542222111111


Q ss_pred             ccccccCCccceEEEEeccCCCCeEE-EEcCCceEEEEeCCCCCCCceeeec-----------------CCCCceeeeec
Q psy17342        211 QYNNKQTKNLAVLSLAFPQNDVNNFV-VGCEDGNVYSACRHGNKAGNVECYE-----------------GHEGPVVGLSS  272 (401)
Q Consensus       211 ~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~i~~~~~~~~~~~~~~~~~-----------------~~~~~v~~i~~  272 (401)
                      .   ..........++|+ +++++++ +...++.|.+|+.............                 .+......+.+
T Consensus       187 ~---~~~~g~gPr~i~f~-pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  262 (365)
T d1jofa_         187 D---APDPGDHPRWVAMH-PTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCAL  262 (365)
T ss_dssp             E---CSSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEE
T ss_pred             e---ecCCCCceEEEEEC-CCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEE
Confidence            1   11234578999999 7887765 4556888999998754432222111                 11223457889


Q ss_pred             CccCCCCCCCcEEEEEeC-C-----CeEEEEEeeCCCceEEEe------ecCCceEEEEECC-CCCcEEEEEecCCEEEE
Q psy17342        273 HRAQGHIDFSHLYLTSSY-D-----WSVKLWNIKENKPVHSFN------EFRDYVMDVQWSP-INPALFATVEVAGRVDL  339 (401)
Q Consensus       273 ~~~~~~~~~~~~l~s~~~-d-----~~i~iwd~~~~~~~~~~~------~~~~~v~~v~~~~-~~~~~l~~~~~d~~i~i  339 (401)
                      +|+      +++++++.. +     ..|..|++.....+....      .......+++++| +|++++++...++.|.+
T Consensus       263 spd------G~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v  336 (365)
T d1jofa_         263 TFS------GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI  336 (365)
T ss_dssp             CTT------SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred             CCC------CCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEE
Confidence            998      677766542 2     237777776543332211      1234567799998 78866677778899999


Q ss_pred             EeCCCCC
Q psy17342        340 WNLNLDT  346 (401)
Q Consensus       340 wd~~~~~  346 (401)
                      |++....
T Consensus       337 ~~~~~~~  343 (365)
T d1jofa_         337 YRWKDEF  343 (365)
T ss_dssp             EEEETTE
T ss_pred             EEEeCCc
Confidence            9986543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=1.2e-08  Score=83.79  Aligned_cols=245  Identities=11%  Similarity=0.090  Sum_probs=154.2

Q ss_pred             CeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEE-eCCCcEEEeec
Q psy17342        120 PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISI-SNDGRLCSWSL  198 (401)
Q Consensus       120 ~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~~wd~  198 (401)
                      ....+++.+++ +++++-..++.|++||.+.. .................-..+++. ...+..+++. +.++.|..++.
T Consensus        24 ~P~gvavd~dg-~i~VaD~~n~rI~v~d~~G~-~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~i~~~~~  100 (279)
T d1q7fa_          24 EPSGVAVNAQN-DIIVADTNNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVV-RNSGDIIVTERSPTHQIQIYNQ  100 (279)
T ss_dssp             CEEEEEECTTC-CEEEEEGGGTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEE-TTTTEEEEEECGGGCEEEEECT
T ss_pred             CccEEEEcCCC-CEEEEECCCCEEEEEeCCCC-EEEEecccCCCccccccccccccc-ccccccceeccCCccccccccc
Confidence            46789999977 67777667889999997642 111111100011122233455552 2233444433 34456666665


Q ss_pred             cCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeee--cCCCCceeeeecCccC
Q psy17342        199 EMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY--EGHEGPVVGLSSHRAQ  276 (401)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~  276 (401)
                      .  +.......      .........+++. +++.++++....+.+.+++....   .+..+  ..+......+++.++ 
T Consensus       101 ~--g~~~~~~~------~~~~~~p~~~avd-~~G~i~v~~~~~~~~~~~~~~g~---~~~~~g~~~~~~~~~~i~~d~~-  167 (279)
T d1q7fa_         101 Y--GQFVRKFG------ATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQNGN---VLHKFGCSKHLEFPNGVVVNDK-  167 (279)
T ss_dssp             T--SCEEEEEC------TTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECTTSC---EEEEEECTTTCSSEEEEEECSS-
T ss_pred             c--ccceeecC------CCcccccceeccc-cCCcEEEEeeccceeeEeccCCc---eeecccccccccccceeeeccc-
Confidence            3  22221111      1123456788888 78888888888888988887543   34443  235566778888887 


Q ss_pred             CCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee--cCCceEEEEECCCCCcEEEEEe-cCCEEEEEeCCCCCCCcceEE
Q psy17342        277 GHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE--FRDYVMDVQWSPINPALFATVE-VAGRVDLWNLNLDTEVPATSA  353 (401)
Q Consensus       277 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~  353 (401)
                           ++++++....+.|++||. +++.+.++..  ......+|++.|+|+ ++++-. .++.|.+|+.. ++.+..+..
T Consensus       168 -----g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~~-G~~~~~~~~  239 (279)
T d1q7fa_         168 -----QEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQD-GQLISALES  239 (279)
T ss_dssp             -----SEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTT-SCEEEEEEE
T ss_pred             -----eeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCe-EEEEECCCCcEEEEECCC-CCEEEEEeC
Confidence                 688888888899999996 4677776642  344578999999997 666644 34579999854 554443332


Q ss_pred             eecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        354 IVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       354 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      . ........+++.|+|.+++ ++.++.|++|+....
T Consensus       240 ~-~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         240 K-VKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             S-SCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred             C-CCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence            1 1223578899999997555 567889999998654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.21  E-value=3.5e-09  Score=88.11  Aligned_cols=235  Identities=11%  Similarity=0.036  Sum_probs=150.8

Q ss_pred             CCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEee
Q psy17342        118 QSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWS  197 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd  197 (401)
                      ...+..+++.|+| +++++...+++|..|+.......        +......+.+++|  .++++++++...++.+..++
T Consensus        27 ~~~~e~iAv~pdG-~l~vt~~~~~~I~~i~p~g~~~~--------~~~~~~~~~gla~--~~dG~l~v~~~~~~~~~~~~   95 (302)
T d2p4oa1          27 NTFLENLASAPDG-TIFVTNHEVGEIVSITPDGNQQI--------HATVEGKVSGLAF--TSNGDLVATGWNADSIPVVS   95 (302)
T ss_dssp             TCCEEEEEECTTS-CEEEEETTTTEEEEECTTCCEEE--------EEECSSEEEEEEE--CTTSCEEEEEECTTSCEEEE
T ss_pred             CCCcCCEEECCCC-CEEEEeCCCCEEEEEeCCCCEEE--------EEcCCCCcceEEE--cCCCCeEEEecCCceEEEEE
Confidence            3457889999988 78888888998888886543211        2345567899999  89999999988888888888


Q ss_pred             ccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceee--------ecCCCCceee
Q psy17342        198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVEC--------YEGHEGPVVG  269 (401)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~--------~~~~~~~v~~  269 (401)
                      ..........  +.   ..........+++. ++++++++.+.++.++.++...........        ..........
T Consensus        96 ~~~~~~~~~~--~~---~~~~~~~~n~i~~~-~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng  169 (302)
T d2p4oa1          96 LVKSDGTVET--LL---TLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG  169 (302)
T ss_dssp             EECTTSCEEE--EE---ECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred             ecccccceee--cc---ccCCccccceeEEc-cCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccc
Confidence            7542211111  11   11134457888898 788888888888999888876543211100        0011122344


Q ss_pred             eecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEE--EeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCC
Q psy17342        270 LSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHS--FNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTE  347 (401)
Q Consensus       270 i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  347 (401)
                      +.+..       ..++++.+..+.|..++.........  ..........+++.++|. ++++...++.|..++.... .
T Consensus       170 i~~~~-------~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~-l~va~~~~~~V~~i~p~G~-~  240 (302)
T d2p4oa1         170 LKRFG-------NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDRS-T  240 (302)
T ss_dssp             EEEET-------TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-EEEECBTTCCEEEECTTCC-E
T ss_pred             ccccC-------CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCC-EEEEEcCCCcEEEECCCCC-E
Confidence            54443       35667777788898888765432221  112234566899999997 7777777888988876532 1


Q ss_pred             CcceEEeecCCCCeEEEEe---cCCCcEEEEEecC
Q psy17342        348 VPATSAIVEGAPALSRVTW---TPNGTQLCVGDEK  379 (401)
Q Consensus       348 ~~~~~~~~~~~~~v~~~~~---s~~g~~l~~~~~d  379 (401)
                       ..+..........++++|   ++|++.|++++..
T Consensus       241 -~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         241 -TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             -EEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             -EEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence             111111123456789999   6788888766543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.20  E-value=7.5e-10  Score=98.52  Aligned_cols=111  Identities=14%  Similarity=0.052  Sum_probs=62.7

Q ss_pred             CCeEEEEcCCceEEEE--eCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC----eEEEEEe--eCCC
Q psy17342        232 VNNFVVGCEDGNVYSA--CRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW----SVKLWNI--KENK  303 (401)
Q Consensus       232 ~~~l~~~~~d~~i~~~--~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~----~i~iwd~--~~~~  303 (401)
                      +..++.+..+|..++|  +..+.   ....+..+...|..+ +.++.     ..+++++..++    .-.||.+  ..+.
T Consensus       332 ~~~~~~s~~dg~~~ly~~~~~g~---~~~~lt~g~~~v~~~-~~~d~-----~~iyf~a~~~~~~p~~~~ly~v~~~g~~  402 (470)
T d2bgra1         332 SFYKIISNEEGYRHICYFQIDKK---DCTFITKGTWEVIGI-EALTS-----DYLYYISNEYKGMPGGRNLYKIQLSDYT  402 (470)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCS---CCEESCCSSSCEEEE-EEECS-----SEEEEEESCGGGCTTCBEEEEEETTCTT
T ss_pred             CcEEEEeccCcCceeEEEeccCC---ceeeeccCCeeEEEE-EEECC-----CEEEEEEecCCCCcceEEEEEEECCCCC
Confidence            3445667777765554  55433   233444445556665 33332     34445554332    2245544  3333


Q ss_pred             ceEEE----eecCCceEEEEECCCCCcEEEEEecC--CEEEEEeCCCCCCCcce
Q psy17342        304 PVHSF----NEFRDYVMDVQWSPINPALFATVEVA--GRVDLWNLNLDTEVPAT  351 (401)
Q Consensus       304 ~~~~~----~~~~~~v~~v~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~  351 (401)
                      ....+    ..|...+.+++|||+|++++.+.+..  -.+.+|+..+++.+..+
T Consensus       403 ~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~l  456 (470)
T d2bgra1         403 KVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL  456 (470)
T ss_dssp             CEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEE
T ss_pred             ceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEE
Confidence            33333    35777899999999999666555543  35888888877655544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.20  E-value=5.5e-08  Score=79.65  Aligned_cols=241  Identities=7%  Similarity=0.025  Sum_probs=154.9

Q ss_pred             ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-----cCCCeeEEEEeCCCCceEEE-EecC
Q psy17342         67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-----CQSPVLSCCFAKFNPYLILG-GTYS  140 (401)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~-g~~d  140 (401)
                      ....|+++|+|+.++ +.+         ..+.|++||.+ ++.+..+...     .......+++.++....+++ .+.+
T Consensus        24 ~P~gvavd~dg~i~V-aD~---------~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~   92 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIV-ADT---------NNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT   92 (279)
T ss_dssp             CEEEEEECTTCCEEE-EEG---------GGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG
T ss_pred             CccEEEEcCCCCEEE-EEC---------CCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCc
Confidence            368899999997544 443         57899999976 4433222111     11234556666654444443 3445


Q ss_pred             CeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        141 GQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       141 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      +.|..++....... ..     -.........+++  .+++..+++....+.+.+++...  .....+..     ..+..
T Consensus        93 ~~i~~~~~~g~~~~-~~-----~~~~~~~p~~~av--d~~G~i~v~~~~~~~~~~~~~~g--~~~~~~g~-----~~~~~  157 (279)
T d1q7fa_          93 HQIQIYNQYGQFVR-KF-----GATILQHPRGVTV--DNKGRIIVVECKVMRVIIFDQNG--NVLHKFGC-----SKHLE  157 (279)
T ss_dssp             CEEEEECTTSCEEE-EE-----CTTTCSCEEEEEE--CTTSCEEEEETTTTEEEEECTTS--CEEEEEEC-----TTTCS
T ss_pred             ccccccccccccee-ec-----CCCcccccceecc--ccCCcEEEEeeccceeeEeccCC--ceeecccc-----ccccc
Confidence            56777765433211 10     0233455678888  78888888877777788877542  22221111     22445


Q ss_pred             ceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec--CCCCceeeeecCccCCCCCCCcEEEEEeC-CCeEEEE
Q psy17342        221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE--GHEGPVVGLSSHRAQGHIDFSHLYLTSSY-DWSVKLW  297 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~~~~~l~s~~~-d~~i~iw  297 (401)
                      ....+++. ++++.+++....+.|++|+..+.   .+..+.  +.......|++.|+      ++++++-.. ++.|.+|
T Consensus       158 ~~~~i~~d-~~g~i~v~d~~~~~V~~~d~~G~---~~~~~g~~g~~~~P~giavD~~------G~i~Vad~~~~~~v~~f  227 (279)
T d1q7fa_         158 FPNGVVVN-DKQEIFISDNRAHCVKVFNYEGQ---YLRQIGGEGITNYPIGVGINSN------GEILIADNHNNFNLTIF  227 (279)
T ss_dssp             SEEEEEEC-SSSEEEEEEGGGTEEEEEETTCC---EEEEESCTTTSCSEEEEEECTT------CCEEEEECSSSCEEEEE
T ss_pred             ccceeeec-cceeEEeeeccccceeeeecCCc---eeeeecccccccCCcccccccC------CeEEEEECCCCcEEEEE
Confidence            67788888 78888888888999999998653   344442  34445678999998      777777544 4579999


Q ss_pred             EeeCCCceEEEeec--CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342        298 NIKENKPVHSFNEF--RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT  346 (401)
Q Consensus       298 d~~~~~~~~~~~~~--~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~  346 (401)
                      +. +++.+.++...  ......|++.|+|. +++ ++.++.|++|......
T Consensus       228 ~~-~G~~~~~~~~~~~~~~p~~vav~~dG~-l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         228 TQ-DGQLISALESKVKHAQCFDVALMDDGS-VVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             CT-TSCEEEEEEESSCCSCEEEEEEETTTE-EEE-EETTTEEEEEECSCCC
T ss_pred             CC-CCCEEEEEeCCCCCCCEeEEEEeCCCc-EEE-EeCCCeEEEEEeeeec
Confidence            84 58877777542  23578999999995 554 4578999999987654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=8.2e-08  Score=78.06  Aligned_cols=241  Identities=9%  Similarity=0.006  Sum_probs=140.0

Q ss_pred             EEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCe--EEEEECCCCCCCceeeccccccCCCCcEEEEEE
Q psy17342         98 VCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQ--IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV  175 (401)
Q Consensus        98 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~--v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  175 (401)
                      .|.|.|.+ +.... ........+.+.+|||||+.+.++....+.  +.+.+.......       ....+.+......|
T Consensus        20 ~l~i~d~d-G~~~~-~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~   90 (269)
T d2hqsa1          20 ELRVSDYD-GYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-------QVASFPRHNGAPAF   90 (269)
T ss_dssp             EEEEEETT-SCSCE-EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-------EEECCSSCEEEEEE
T ss_pred             EEEEEcCC-CCCcE-EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-------EEeeeeccccccee
Confidence            68888887 33333 334557889999999999766666555544  445555544322       12456777888888


Q ss_pred             eecCCceEEEEEeC-CCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCce--EEEEeCCCC
Q psy17342        176 IGTQNAHNLISISN-DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGN--VYSACRHGN  252 (401)
Q Consensus       176 ~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~~~~~~~~  252 (401)
                        +|++..++.... ++...++..........  ..     ...........+++.....+++...++.  |...+....
T Consensus        91 --spdg~~i~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~  161 (269)
T d2hqsa1          91 --SPDGSKLAFALSKTGSLNLYVMDLASGQIR--QV-----TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG  161 (269)
T ss_dssp             --CTTSSEEEEEECTTSSCEEEEEETTTCCEE--EC-----CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred             --cCCCCeeeEeeecCCccceeecccccccce--ee-----eeccccccccccccccccceecccccCCceEeeeecccc
Confidence              999998887654 33333333322111111  11     1122233444555233344455555554  555555433


Q ss_pred             CCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe-CCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEE
Q psy17342        253 KAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS-YDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATV  331 (401)
Q Consensus       253 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~  331 (401)
                      .   ......+........|+|+      +..++..+ ..+...+|.............+........|+|+|+.++.+.
T Consensus       162 ~---~~~~~~~~~~~~~~~~spd------g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s  232 (269)
T d2hqsa1         162 A---PQRITWEGSQNQDADVSSD------GKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSS  232 (269)
T ss_dssp             C---CEECCCSSSEEEEEEECTT------SSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEE
T ss_pred             c---ceeeecccccccccccccc------cceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEE
Confidence            2   3334445666777889998      55555544 455566665554443344545566778889999999655554


Q ss_pred             ecC--CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCC
Q psy17342        332 EVA--GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPN  369 (401)
Q Consensus       332 ~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  369 (401)
                      ...  ..|+++++..+.....    ......+...+|||-
T Consensus       233 ~~~~~~~l~~~~~dg~~~~~l----t~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         233 SQGMGSVLNLVSTDGRFKARL----PATDGQVKFPAWSPY  268 (269)
T ss_dssp             EETTEEEEEEEETTSCCEEEC----CCSSSEEEEEEECCC
T ss_pred             cCCCCcEEEEEECCCCCEEEE----eCCCCcEEeEEeCCC
Confidence            433  4688899886543222    233556778899983

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.19  E-value=6.6e-09  Score=86.38  Aligned_cols=238  Identities=10%  Similarity=-0.050  Sum_probs=149.6

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      ..+..++++|||+.+++..          .+++|..++... +.  .........+.+++|.|++ +++++...++.+..
T Consensus        28 ~~~e~iAv~pdG~l~vt~~----------~~~~I~~i~p~g-~~--~~~~~~~~~~~gla~~~dG-~l~v~~~~~~~~~~   93 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNH----------EVGEIVSITPDG-NQ--QIHATVEGKVSGLAFTSNG-DLVATGWNADSIPV   93 (302)
T ss_dssp             CCEEEEEECTTSCEEEEET----------TTTEEEEECTTC-CE--EEEEECSSEEEEEEECTTS-CEEEEEECTTSCEE
T ss_pred             CCcCCEEECCCCCEEEEeC----------CCCEEEEEeCCC-CE--EEEEcCCCCcceEEEcCCC-CeEEEecCCceEEE
Confidence            3588899999998666655          688888888663 32  2334456789999999988 68888777888888


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCcccc--ccccccccCCccceE
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETR--DLQYNNKQTKNLAVL  223 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~v~  223 (401)
                      ++..........   +...........+.+  .+++.++++.+.++.+..++...........  ...............
T Consensus        94 ~~~~~~~~~~~~---~~~~~~~~~~n~i~~--~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n  168 (302)
T d2p4oa1          94 VSLVKSDGTVET---LLTLPDAIFLNGITP--LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN  168 (302)
T ss_dssp             EEEECTTSCEEE---EEECTTCSCEEEEEE--SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred             EEecccccceee---ccccCCccccceeEE--ccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccc
Confidence            887654432111   111234556788888  8999998888888888887765421000000  000000111223445


Q ss_pred             EEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCC
Q psy17342        224 SLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENK  303 (401)
Q Consensus       224 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  303 (401)
                      .+.+.  ....+++.+..+.|+.++.....................+++.++      ++++++...++.|..++.. ++
T Consensus       169 gi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~d------G~l~va~~~~~~V~~i~p~-G~  239 (302)
T d2p4oa1         169 GLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVE------GNLYGATHIYNSVVRIAPD-RS  239 (302)
T ss_dssp             EEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTT------CCEEEECBTTCCEEEECTT-CC
T ss_pred             ccccc--CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCC------CCEEEEEcCCCcEEEECCC-CC
Confidence            66665  345667778889999888765332111112123344678999998      7888888888999998764 44


Q ss_pred             ceEEEe--ecCCceEEEEE---CCCCCcEEEEE
Q psy17342        304 PVHSFN--EFRDYVMDVQW---SPINPALFATV  331 (401)
Q Consensus       304 ~~~~~~--~~~~~v~~v~~---~~~~~~~l~~~  331 (401)
                      ......  ..-...++++|   ++|++.++++.
T Consensus       240 ~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         240 TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             EEEEEecCCCCCCceEEEEcCCCCCCCEEEEEC
Confidence            322222  22345789999   67777554443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.18  E-value=7.9e-09  Score=83.86  Aligned_cols=238  Identities=10%  Similarity=0.004  Sum_probs=146.7

Q ss_pred             CCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeec
Q psy17342        119 SPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSL  198 (401)
Q Consensus       119 ~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~  198 (401)
                      .....+++.+++.-+++.....+.+..++........     ....+ ......+++  .+++..+++....+.+++++-
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~-----~~~~~-~~~p~gvav--~~~g~i~v~d~~~~~i~~~~~   85 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-----LPFNG-LYQPQGLAV--DGAGTVYVTDFNNRVVTLAAG   85 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEE-----CCCCS-CCSCCCEEE--CTTCCEEEEETTTEEEEECTT
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEE-----eccCC-ccCceEEEE--cCCCCEEEeeeeeceeeeeee
Confidence            4568999999884345445556777777665543211     11111 123457787  788887777776666666654


Q ss_pred             cCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCC
Q psy17342        199 EMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGH  278 (401)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  278 (401)
                      ..   .......      .....+..+++. ++++++++-..+..+..++...... ...... ......++++.|.   
T Consensus        86 ~~---~~~~~~~------~~~~~p~~iavd-~~g~i~v~d~~~~~~~~~~~~~~~~-~~~~~~-~~~~p~~i~~~~~---  150 (260)
T d1rwia_          86 SN---NQTVLPF------DGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAGSKTQ-TVLPFT-GLNDPDGVAVDNS---  150 (260)
T ss_dssp             CS---CCEECCC------CSCCSEEEEEEC-TTCCEEEEEGGGTEEEEECTTCSSC-EECCCC-SCCSCCEEEECTT---
T ss_pred             cc---ceeeeee------eeeeeccccccc-ccceeEeecccccccccccccccee-eeeeec-ccCCcceeeecCC---
Confidence            32   1111111      123457889998 6888887777777788887654321 111111 2234578888887   


Q ss_pred             CCCCcEEEEEeCCCeEEEEEeeCCCceEEEe-ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecC
Q psy17342        279 IDFSHLYLTSSYDWSVKLWNIKENKPVHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEG  357 (401)
Q Consensus       279 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  357 (401)
                         ++++++...++.|..+|...... ..+. ..-.....+++.++|. ++++....+.|..++...... ...  ....
T Consensus       151 ---g~~~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~~~~-~~~--~~~~  222 (260)
T d1rwia_         151 ---GNVYVTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTTS-TVL--PFTG  222 (260)
T ss_dssp             ---CCEEEEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTTCSCC-EEC--CCCS
T ss_pred             ---CCEeeecccccccccccccccee-eeeeccccCCCccceeeeeee-eeeeecCCCEEEEEeCCCCeE-EEE--ccCC
Confidence               68888888888999999764432 3332 3345678999999996 788887788888887654321 111  1122


Q ss_pred             CCCeEEEEecCCCcEEEEEecCCcEEEEEe
Q psy17342        358 APALSRVTWTPNGTQLCVGDEKGAITMFDV  387 (401)
Q Consensus       358 ~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~  387 (401)
                      -.....++++++|.++++-..+++|+.++.
T Consensus       223 ~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         223 LNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             CCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             CCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            245688999999988777666676655443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.17  E-value=1e-07  Score=79.35  Aligned_cols=254  Identities=12%  Similarity=0.078  Sum_probs=150.4

Q ss_pred             CCCeeEEEEeCCCCceEEEEe-------cCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC
Q psy17342        118 QSPVLSCCFAKFNPYLILGGT-------YSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND  190 (401)
Q Consensus       118 ~~~v~~~~~~~~~~~~l~~g~-------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d  190 (401)
                      -.....++|.|++ ++.++..       .+|+|..||..++........  ......+.-..+.+  .++++.++++...
T Consensus        17 ~~g~EGpa~d~dG-~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~--~~~~~~g~P~Gl~~--~~dg~~l~vad~~   91 (314)
T d1pjxa_          17 IPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP--EVNGYGGIPAGCQC--DRDANQLFVADMR   91 (314)
T ss_dssp             CTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEECC--EETTEECCEEEEEE--CSSSSEEEEEETT
T ss_pred             CCCCeEeEEeCCC-CEEEEECccccccccCCEEEEEECCCCcEEEEECC--ccccCCCcceeEEE--eCCCCEEEEEECC
Confidence            3456778999988 4444422       146788888877654322110  01112233567888  8888888887777


Q ss_pred             CcEEEeeccCCCCCccccccccccccCC-ccceEEEEeccCCCCeEEEEcC---------------CceEEEEeCCCCCC
Q psy17342        191 GRLCSWSLEMLSSPQETRDLQYNNKQTK-NLAVLSLAFPQNDVNNFVVGCE---------------DGNVYSACRHGNKA  254 (401)
Q Consensus       191 g~i~~wd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~---------------d~~i~~~~~~~~~~  254 (401)
                      +.+...+....  ........   ..+. -.....+++. +++++.++-..               .|.|+.++....  
T Consensus        92 ~~i~~~~~~g~--~~~~~~~~---~~g~~~~~pndl~~d-~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~--  163 (314)
T d1pjxa_          92 LGLLVVQTDGT--FEEIAKKD---SEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ--  163 (314)
T ss_dssp             TEEEEEETTSC--EEECCSBC---TTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC--
T ss_pred             CeEEEEeCCCc--EEEEEecc---ccccccCCCcEEEEC-CCCCEEEecCccCcccccccceeccCCceEEEEeecCc--
Confidence            77888886531  11111111   0111 1235678888 77777665321               345655554432  


Q ss_pred             CceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEE------Eee-cCCceEEEEECCCCCcE
Q psy17342        255 GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHS------FNE-FRDYVMDVQWSPINPAL  327 (401)
Q Consensus       255 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~------~~~-~~~~v~~v~~~~~~~~~  327 (401)
                        ...+...-..-+.++|+|+... ....++++-+..+.|..||+.....+..      +.. +......+++.++|. +
T Consensus       164 --~~~~~~~~~~pNGi~~~~d~d~-~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-l  239 (314)
T d1pjxa_         164 --MIQVDTAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-L  239 (314)
T ss_dssp             --EEEEEEEESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-E
T ss_pred             --eeEeeCCcceeeeeEECCCCCc-ceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc-E
Confidence              1122222223467888876210 0012555666788999999865433221      111 123456899999997 7


Q ss_pred             EEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEE-EEEecCCcEEEEEeccCc
Q psy17342        328 FATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQL-CVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       328 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~v~iw~~~~~~  391 (401)
                      +++....+.|.+||...+.....+.   ......++++|.|+++.| ++.+.+|.|..+++...+
T Consensus       240 yVa~~~~g~I~~~dp~~g~~~~~i~---~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         240 LVANWGSSHIEVFGPDGGQPKMRIR---CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             EEEEETTTEEEEECTTCBSCSEEEE---CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             EEEEcCCCEEEEEeCCCCEEEEEEE---CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence            7777678899999988766544433   223568899999998755 566677889888887655

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.14  E-value=2.2e-08  Score=81.17  Aligned_cols=238  Identities=10%  Similarity=-0.024  Sum_probs=146.0

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      -.-..++++++|...++..         ...+.+..++..... ..............+++.+++ +++++....+.+++
T Consensus        14 ~~P~~vavd~dG~i~v~~~---------~~~~~i~~~~~~~~~-~~~~~~~~~~~p~gvav~~~g-~i~v~d~~~~~i~~   82 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSE---------GMYGRVVKLATGSTG-TTVLPFNGLYQPQGLAVDGAG-TVYVTDFNNRVVTL   82 (260)
T ss_dssp             CCEEEEEECTTCCEEEEEC---------SSSCEEEEEC----C-EEECCCCSCCSCCCEEECTTC-CEEEEETTTEEEEE
T ss_pred             CCCCEEEEcCCCCEEEEEc---------CCCCEEEEEcCCCce-EEEeccCCccCceEEEEcCCC-CEEEeeeeeceeee
Confidence            3467899999997666554         145777777765322 111111223456788999977 67776665555555


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEE
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL  225 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (401)
                      ++-.+....      . .........++++  .+++.++++-..+..+..++....  ........      .......+
T Consensus        83 ~~~~~~~~~------~-~~~~~~~p~~iav--d~~g~i~v~d~~~~~~~~~~~~~~--~~~~~~~~------~~~~p~~i  145 (260)
T d1rwia_          83 AAGSNNQTV------L-PFDGLNYPEGLAV--DTQGAVYVADRGNNRVVKLAAGSK--TQTVLPFT------GLNDPDGV  145 (260)
T ss_dssp             CTTCSCCEE------C-CCCSCCSEEEEEE--CTTCCEEEEEGGGTEEEEECTTCS--SCEECCCC------SCCSCCEE
T ss_pred             eeeccceee------e-eeeeeeecccccc--cccceeEeeccccccccccccccc--eeeeeeec------ccCCccee
Confidence            543333211      1 1122345688988  788887777666666777765431  11111111      12345678


Q ss_pred             EeccCCCCeEEEEcCCceEEEEeCCCCCCCceeee-cCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCc
Q psy17342        226 AFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECY-EGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKP  304 (401)
Q Consensus       226 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  304 (401)
                      ++. ++++.+++...++.|..++.....   ...+ .........|++.++      ++++++....+.|..++.... .
T Consensus       146 ~~~-~~g~~~v~~~~~~~i~~~d~~~~~---~~~~~~~~~~~p~gi~~d~~------g~l~vsd~~~~~i~~~~~~~~-~  214 (260)
T d1rwia_         146 AVD-NSGNVYVTDTDNNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEA------GTVYVTEHNTNQVVKLLAGST-T  214 (260)
T ss_dssp             EEC-TTCCEEEEEGGGTEEEEECTTTCC---EEECCCSSCCSEEEEEECTT------CCEEEEETTTTEEEEECTTCS-C
T ss_pred             eec-CCCCEeeeccccccccccccccce---eeeeeccccCCCccceeeee------eeeeeeecCCCEEEEEeCCCC-e
Confidence            888 688888888888899999876442   2222 234455678999887      688888877888888876433 2


Q ss_pred             eEEEe-ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCC
Q psy17342        305 VHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLN  343 (401)
Q Consensus       305 ~~~~~-~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~  343 (401)
                      ...+. ..-.....|+++++|. ++++-..+++|+.++..
T Consensus       215 ~~~~~~~~~~~P~~i~~d~~g~-l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         215 STVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             CEECCCCSCCCEEEEEECTTCC-EEEEEGGGTEEEEECCC
T ss_pred             EEEEccCCCCCeEEEEEeCCCC-EEEEECCCCEEEEEeCC
Confidence            22222 2224568999999986 77777777777766544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=5.7e-08  Score=85.51  Aligned_cols=313  Identities=7%  Similarity=-0.012  Sum_probs=161.4

Q ss_pred             ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe-cCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF-CQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      .+....||||+++++...-.. .....+..+.+.+||+.++...+..... ....+....|||+|..+.++  .++.|.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~-~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv--~~~nl~~  138 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVE-PIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI--FENNIYY  138 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCC-CCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE--ETTEEEE
T ss_pred             ccceeEECCCCCeEEEEEccc-ceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEE--ecceEEE
Confidence            467788999999988775211 1111235688999999976543221111 23456678999999655554  3678888


Q ss_pred             EECCCCCCCceeeccccccCCCCc-----------------EEEEEEeecCCceEEEEEeCC-CcEEEeeccCCC-C--C
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHP-----------------VFCMSVIGTQNAHNLISISND-GRLCSWSLEMLS-S--P  204 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~-----------------v~~~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~-~--~  204 (401)
                      .+...+......     ..+..+.                 -.++.|  +|+|.+|+....| ..+..+.+.... .  +
T Consensus       139 ~~~~~~~~~~lt-----~~g~~~~i~nG~~d~vyeee~~~~~~a~~W--SPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p  211 (465)
T d1xfda1         139 CAHVGKQAIRVV-----STGKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYP  211 (465)
T ss_dssp             ESSSSSCCEEEE-----CCCBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSC
T ss_pred             EecCCCceEEEe-----cccCcceeeccccchhhhhhhccccceEEE--CCCCCeEEEEEecccccceeecccccccccc
Confidence            888765543221     1121111                 145667  9999999987533 334443332100 0  0


Q ss_pred             ----------------------------ccccccccccccCCccceEEEEeccCCCCeEEEEcC-C---ceEEEEeCCCC
Q psy17342        205 ----------------------------QETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE-D---GNVYSACRHGN  252 (401)
Q Consensus       205 ----------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d---~~i~~~~~~~~  252 (401)
                                                  ................-+..+.|+ ++++.++.... +   ..+.++|....
T Consensus       212 ~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~-~d~~~~~~~~nR~q~~~~i~~~d~~tg  290 (465)
T d1xfda1         212 TVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWA-TSTKVAVTWLNRAQNVSILTLCDATTG  290 (465)
T ss_dssp             CCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEES-SSSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred             eeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEc-CCCeEEEEEEccccccceEEEEcCCCC
Confidence                                        000000000011122346678888 66665554322 2   24667777654


Q ss_pred             CCCceeeecCCCCce----eeeecCccCCCCCCCcE-EEEEe-CCC--eEEEEEee------CCCceEEEeecCCceEEE
Q psy17342        253 KAGNVECYEGHEGPV----VGLSSHRAQGHIDFSHL-YLTSS-YDW--SVKLWNIK------ENKPVHSFNEFRDYVMDV  318 (401)
Q Consensus       253 ~~~~~~~~~~~~~~v----~~i~~~~~~~~~~~~~~-l~s~~-~d~--~i~iwd~~------~~~~~~~~~~~~~~v~~v  318 (401)
                      ....+..-. ..+.|    ....|.|+.     ..+ ++..+ .+|  .+...++.      .++.+..+....-.|..+
T Consensus       291 ~~~~~~~e~-~~~wv~~~~~~p~~~~dg-----~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i  364 (465)
T d1xfda1         291 VCTKKHEDE-SEAWLHRQNEEPVFSKDG-----RKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKI  364 (465)
T ss_dssp             CEEEEEEEE-CSSCCCCCCCCCEECTTS-----CSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEE
T ss_pred             cEEEEEEEc-CCceEeccCCceeEccCC-----CeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEE
Confidence            322222111 22222    234566662     222 23233 233  34444432      233334444334456664


Q ss_pred             -EECCCCCcEEEEEecCC--EEEEEe--CCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecC---CcEEEEEeccC
Q psy17342        319 -QWSPINPALFATVEVAG--RVDLWN--LNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEK---GAITMFDVGEV  390 (401)
Q Consensus       319 -~~~~~~~~~l~~~~~d~--~i~iwd--~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---g~v~iw~~~~~  390 (401)
                       .|+++++.++.++..++  .-++|.  +........+...........++.|||+|++++.....   -.+.+++..++
T Consensus       365 ~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~  444 (465)
T d1xfda1         365 LAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDK  444 (465)
T ss_dssp             EEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTC
T ss_pred             EEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCC
Confidence             68888876666665442  333444  44332222221111233456789999999998854432   45788887776


Q ss_pred             ccceeeee
Q psy17342        391 GIACLKFI  398 (401)
Q Consensus       391 ~~~~l~~~  398 (401)
                        +.+..|
T Consensus       445 --~~~~~L  450 (465)
T d1xfda1         445 --KKMFDL  450 (465)
T ss_dssp             --CEEEEE
T ss_pred             --CEEEEE
Confidence              445554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.12  E-value=5.2e-08  Score=81.12  Aligned_cols=253  Identities=11%  Similarity=0.047  Sum_probs=149.8

Q ss_pred             eEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEe---cCCCeeEEEEeCCCCceEEEEecCCeEE
Q psy17342         68 VTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFF---CQSPVLSCCFAKFNPYLILGGTYSGQIV  144 (401)
Q Consensus        68 v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~g~~dg~v~  144 (401)
                      ...++|.|+|+.+++....   ......+++|..||.+++.........   .......++|.+++ ++++++...+.|.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~---~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg-~~l~vad~~~~i~   95 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEV---EVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA-NQLFVADMRLGLL   95 (314)
T ss_dssp             CEEEEECTTSCEEEEETTC---EETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS-SEEEEEETTTEEE
T ss_pred             CeEeEEeCCCCEEEEECcc---ccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCC-CEEEEEECCCeEE
Confidence            5667899999766654310   000012467888898865432211100   12346789999987 5555555666788


Q ss_pred             EEECCCCCCCceeeccccccCC-CCcEEEEEEeecCCceEEEEEeC---------------CCcEEEeeccCCCCCcccc
Q psy17342        145 LWDTRVQKKTPVHRTPLSVMAH-THPVFCMSVIGTQNAHNLISISN---------------DGRLCSWSLEMLSSPQETR  208 (401)
Q Consensus       145 iw~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~---------------dg~i~~wd~~~~~~~~~~~  208 (401)
                      ..+.+.........   ...+. -...+.+++  .++|...++-..               .|.|..++..  +....  
T Consensus        96 ~~~~~g~~~~~~~~---~~~g~~~~~pndl~~--d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d--g~~~~--  166 (314)
T d1pjxa_          96 VVQTDGTFEEIAKK---DSEGRRMQGCNDCAF--DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQMIQ--  166 (314)
T ss_dssp             EEETTSCEEECCSB---CTTSCBCBCCCEEEE--CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCEEE--
T ss_pred             EEeCCCcEEEEEec---cccccccCCCcEEEE--CCCCCEEEecCccCcccccccceeccCCceEEEEeec--CceeE--
Confidence            88876543221100   00111 112467888  788877776422               1223333221  11111  


Q ss_pred             ccccccccCCccceEEEEeccCCCC-----eEEEEcCCceEEEEeCCCCCCC----ceeeecC-CCCceeeeecCccCCC
Q psy17342        209 DLQYNNKQTKNLAVLSLAFPQNDVN-----NFVVGCEDGNVYSACRHGNKAG----NVECYEG-HEGPVVGLSSHRAQGH  278 (401)
Q Consensus       209 ~~~~~~~~~~~~~v~~~~~~~~~~~-----~l~~~~~d~~i~~~~~~~~~~~----~~~~~~~-~~~~v~~i~~~~~~~~  278 (401)
                       +..     .-.....++|+ +++.     ++++-+..+.|+.|++......    ....+.+ +......+++.++   
T Consensus       167 -~~~-----~~~~pNGi~~~-~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~---  236 (314)
T d1pjxa_         167 -VDT-----AFQFPNGIAVR-HMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED---  236 (314)
T ss_dssp             -EEE-----EESSEEEEEEE-ECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT---
T ss_pred             -eeC-----CcceeeeeEEC-CCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecC---
Confidence             100     11234577888 4443     4555677888999887532110    0111111 2223457888877   


Q ss_pred             CCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCC
Q psy17342        279 IDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDT  346 (401)
Q Consensus       279 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~  346 (401)
                         ++++++....+.|.+||.+.++.+..+.......++++|.|+++.++++.+.+|.|...++....
T Consensus       237 ---GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         237 ---NNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             ---CCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             ---CcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence               78888887889999999888888777777667789999999997788888888999988876543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=6.1e-08  Score=78.84  Aligned_cols=225  Identities=11%  Similarity=0.013  Sum_probs=130.4

Q ss_pred             cceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEE
Q psy17342         66 RNVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVL  145 (401)
Q Consensus        66 ~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~i  145 (401)
                      ..+.+.+|||||+.||......       ....+.+.+...+  .......+........|+|++..++......+...+
T Consensus        39 ~~~~sP~wSPDGk~IAf~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~  109 (269)
T d2hqsa1          39 QPLMSPAWSPDGSKLAYVTFES-------GRSALVIQTLANG--AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL  109 (269)
T ss_dssp             SCEEEEEECTTSSEEEEEECTT-------SSCEEEEEETTTC--CEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             CceeeeEECCCCCEEEEEEeec-------cCcceeeeecccC--ceeEEeeeecccccceecCCCCeeeEeeecCCccce
Confidence            5578899999999999887311       2335666666543  333445567888999999999766666555555544


Q ss_pred             EECCCCCCCceeeccccccCCCCcEEEEEEeecCCce-EEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEE
Q psy17342        146 WDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAH-NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLS  224 (401)
Q Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (401)
                      +..........     .............+  ++++. .+++...+|...+|..........  .+     .........
T Consensus       110 ~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~--~~-----~~~~~~~~~  175 (269)
T d2hqsa1         110 YVMDLASGQIR-----QVTDGRSNNTEPTW--FPDSQNLAFTSDQAGRPQVYKVNINGGAPQ--RI-----TWEGSQNQD  175 (269)
T ss_dssp             EEEETTTCCEE-----ECCCCSSCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTSSCCE--EC-----CCSSSEEEE
T ss_pred             eecccccccce-----eeeecccccccccc--ccccccceecccccCCceEeeeecccccce--ee-----ecccccccc
Confidence            44433322111     11223333334444  44544 444555566555554432121111  11     113445677


Q ss_pred             EEeccCCCCeEEEEcCC-ceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC---CCeEEEEEee
Q psy17342        225 LAFPQNDVNNFVVGCED-GNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY---DWSVKLWNIK  300 (401)
Q Consensus       225 ~~~~~~~~~~l~~~~~d-~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~  300 (401)
                      ..|+ +++..++..+.+ +...+|....... .. ....+........|+|+      ++.|+-.+.   ...|.++++.
T Consensus       176 ~~~s-pdg~~~~~~~~~~~~~~i~~~~~~~~-~~-~~~~~~~~~~~p~~SPD------G~~i~f~s~~~~~~~l~~~~~d  246 (269)
T d2hqsa1         176 ADVS-SDGKFMVMVSSNGGQQHIAKQDLATG-GV-QVLSSTFLDETPSLAPN------GTMVIYSSSQGMGSVLNLVSTD  246 (269)
T ss_dssp             EEEC-TTSSEEEEEEECSSCEEEEEEETTTC-CE-EECCCSSSCEEEEECTT------SSEEEEEEEETTEEEEEEEETT
T ss_pred             cccc-cccceeEEEeecCCceeeeEeecccc-cc-eEeecCccccceEECCC------CCEEEEEEcCCCCcEEEEEECC
Confidence            7899 777777665544 3444443332222 12 33335556678899999      677664443   3468889987


Q ss_pred             CCCceEEEeecCCceEEEEECCC
Q psy17342        301 ENKPVHSFNEFRDYVMDVQWSPI  323 (401)
Q Consensus       301 ~~~~~~~~~~~~~~v~~v~~~~~  323 (401)
                      .+. ...+....+.+...+|+|-
T Consensus       247 g~~-~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         247 GRF-KARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             SCC-EEECCCSSSEEEEEEECCC
T ss_pred             CCC-EEEEeCCCCcEEeEEeCCC
Confidence            554 4556666778888999984

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.92  E-value=1.7e-06  Score=72.00  Aligned_cols=234  Identities=10%  Similarity=0.113  Sum_probs=139.9

Q ss_pred             CeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC--CcEEEee
Q psy17342        120 PVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND--GRLCSWS  197 (401)
Q Consensus       120 ~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~~wd  197 (401)
                      .+..++|.+++ ++.++-...+.|..|+.........      ..........+++  .++|.++++...+  ....++.
T Consensus        41 ~lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g~~~~~~------~~~~~~~p~gla~--~~dG~l~va~~~~~~~~~~i~~  111 (319)
T d2dg1a1          41 QLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIKRP------FVSHKANPAAIKI--HKDGRLFVCYLGDFKSTGGIFA  111 (319)
T ss_dssp             CEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEE------EECSSSSEEEEEE--CTTSCEEEEECTTSSSCCEEEE
T ss_pred             CcEeCEECCCC-CEEEEECCCCEEEEEECCCCeEEEE------EeCCCCCeeEEEE--CCCCCEEEEecCCCccceeEEE
Confidence            44688999987 6777777788898888876543211      1234456788998  8899877765432  2333443


Q ss_pred             ccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC------CceEEEEeCCCCCCCceeeecCCCCceeeee
Q psy17342        198 LEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE------DGNVYSACRHGNKAGNVECYEGHEGPVVGLS  271 (401)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~  271 (401)
                      +.......... ..   .......+..+++. +++++.++...      .+.++.++.....   +..+...-...+.++
T Consensus       112 ~~~~~~~~~~~-~~---~~~~~~~~nd~~~d-~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~---~~~~~~~~~~pnGia  183 (319)
T d2dg1a1         112 ATENGDNLQDI-IE---DLSTAYCIDDMVFD-SKGGFYFTDFRGYSTNPLGGVYYVSPDFRT---VTPIIQNISVANGIA  183 (319)
T ss_dssp             ECTTSCSCEEE-EC---SSSSCCCEEEEEEC-TTSCEEEEECCCBTTBCCEEEEEECTTSCC---EEEEEEEESSEEEEE
T ss_pred             EcCCCceeeee-cc---CCCcccCCcceeEE-eccceeecccccccccCcceeEEEecccce---eEEEeeccceeeeee
Confidence            33211111111 00   01123356788888 78876655432      2346666554322   222222223457899


Q ss_pred             cCccCCCCCCCc-EEEEEeCCCeEEEEEeeCC-CceEEEe-------ecCCceEEEEECCCCCcEEEEEecCCEEEEEeC
Q psy17342        272 SHRAQGHIDFSH-LYLTSSYDWSVKLWNIKEN-KPVHSFN-------EFRDYVMDVQWSPINPALFATVEVAGRVDLWNL  342 (401)
Q Consensus       272 ~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~-~~~~~~~-------~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~  342 (401)
                      |+|+      ++ ++++-+..++|..||+... .......       ........+++.++|. ++++....+.|.++|.
T Consensus       184 ~s~d------g~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         184 LSTD------EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             ECTT------SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECT
T ss_pred             eccc------cceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEcCCCEEEEECC
Confidence            9998      45 5566666889999998642 2222111       1123356899999997 7777778899999996


Q ss_pred             CCCCCCcceEEee---cCCCCeEEEEecCCCcEEEEEec
Q psy17342        343 NLDTEVPATSAIV---EGAPALSRVTWTPNGTQLCVGDE  378 (401)
Q Consensus       343 ~~~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~  378 (401)
                       .++.+..+..+.   .+...+++++|.+++..+++...
T Consensus       257 -~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         257 -RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             -TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             -CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence             466555544322   12345789999998877765543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.77  E-value=5.6e-06  Score=68.75  Aligned_cols=202  Identities=11%  Similarity=0.075  Sum_probs=124.3

Q ss_pred             CcEEEEEEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC----Cce
Q psy17342        168 HPVFCMSVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE----DGN  243 (401)
Q Consensus       168 ~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----d~~  243 (401)
                      ..+..++|  .+++++.++-...++|..|+.....  .....      .........++++ ++++++++...    .+.
T Consensus        40 ~~lEG~~~--D~~G~Ly~~D~~~g~I~ri~p~g~~--~~~~~------~~~~~~p~gla~~-~dG~l~va~~~~~~~~~~  108 (319)
T d2dg1a1          40 LQLEGLNF--DRQGQLFLLDVFEGNIFKINPETKE--IKRPF------VSHKANPAAIKIH-KDGRLFVCYLGDFKSTGG  108 (319)
T ss_dssp             CCEEEEEE--CTTSCEEEEETTTCEEEEECTTTCC--EEEEE------ECSSSSEEEEEEC-TTSCEEEEECTTSSSCCE
T ss_pred             cCcEeCEE--CCCCCEEEEECCCCEEEEEECCCCe--EEEEE------eCCCCCeeEEEEC-CCCCEEEEecCCCcccee
Confidence            34568888  8889877777788888888875411  11111      1133457789999 78887776543    233


Q ss_pred             EEEEeCCCCCCCceeeec--CCCCceeeeecCccCCCCCCCcEEEEEeCC------CeEEEEEeeCCCceEEEeecCCce
Q psy17342        244 VYSACRHGNKAGNVECYE--GHEGPVVGLSSHRAQGHIDFSHLYLTSSYD------WSVKLWNIKENKPVHSFNEFRDYV  315 (401)
Q Consensus       244 i~~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~v  315 (401)
                      +...+.....  ......  .-....+.+.+.|+      +++.++....      +.+..++.. ++.+..+...-...
T Consensus       109 i~~~~~~~~~--~~~~~~~~~~~~~~nd~~~d~~------G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~~~p  179 (319)
T d2dg1a1         109 IFAATENGDN--LQDIIEDLSTAYCIDDMVFDSK------GGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNISVA  179 (319)
T ss_dssp             EEEECTTSCS--CEEEECSSSSCCCEEEEEECTT------SCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEESSE
T ss_pred             EEEEcCCCce--eeeeccCCCcccCCcceeEEec------cceeecccccccccCcceeEEEecc-cceeEEEeecccee
Confidence            5555544322  222221  11234677888887      6766664321      234444433 34444443334456


Q ss_pred             EEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcce-----EEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccC
Q psy17342        316 MDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPAT-----SAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEV  390 (401)
Q Consensus       316 ~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~  390 (401)
                      +.++|+|+++.++++-+..+.|..|++.........     ..........-.+++.++|++.++....+.|.+|+. ++
T Consensus       180 nGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G  258 (319)
T d2dg1a1         180 NGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG  258 (319)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TS
T ss_pred             eeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CC
Confidence            889999999867777788899999998754322111     111112233567999999998888888899999995 44

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.76  E-value=1e-05  Score=66.18  Aligned_cols=228  Identities=9%  Similarity=-0.039  Sum_probs=145.1

Q ss_pred             EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECC
Q psy17342         70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTR  149 (401)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~  149 (401)
                      ...|++....|.-...         ..+.|.-||.++++..   .+.....+.++++.+++ .++++ +.+ .+.++|..
T Consensus        22 gp~wd~~~~~l~wvDi---------~~~~I~r~d~~~g~~~---~~~~~~~~~~i~~~~dg-~l~va-~~~-gl~~~d~~   86 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNI---------LERELHELHLASGRKT---VHALPFMGSALAKISDS-KQLIA-SDD-GLFLRDTA   86 (295)
T ss_dssp             EEEEETTTTEEEEEEG---------GGTEEEEEETTTTEEE---EEECSSCEEEEEEEETT-EEEEE-ETT-EEEEEETT
T ss_pred             CCeEECCCCEEEEEEC---------CCCEEEEEECCCCeEE---EEECCCCcEEEEEecCC-CEEEE-EeC-ccEEeecc
Confidence            4568876666666653         5789999999866432   33446788999998876 56654 344 58899998


Q ss_pred             CCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC----CCcEEEeeccCCCCCccccccccccccCCccceEEE
Q psy17342        150 VQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN----DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSL  225 (401)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  225 (401)
                      +++.......  ........++.+.+  .++|.+.++...    .+.-.+|.+... .   ...+..     .-.....+
T Consensus        87 tg~~~~l~~~--~~~~~~~~~nd~~v--d~~G~iw~~~~~~~~~~~~g~l~~~~~g-~---~~~~~~-----~~~~~Ng~  153 (295)
T d2ghsa1          87 TGVLTLHAEL--ESDLPGNRSNDGRM--HPSGALWIGTMGRKAETGAGSIYHVAKG-K---VTKLFA-----DISIPNSI  153 (295)
T ss_dssp             TCCEEEEECS--STTCTTEEEEEEEE--CTTSCEEEEEEETTCCTTCEEEEEEETT-E---EEEEEE-----EESSEEEE
T ss_pred             cceeeEEeee--ecCCCcccceeeEE--CCCCCEEEEeccccccccceeEeeecCC-c---EEEEee-----ccCCccee
Confidence            8765432211  01122335778877  888887666432    223455555431 1   111111     22245678


Q ss_pred             EeccCCCC-eEEEEcCCceEEEEeCCCCCCC------ceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        226 AFPQNDVN-NFVVGCEDGNVYSACRHGNKAG------NVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       226 ~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~------~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      +|+ ++++ .+++-+..+.|+.+++......      ....+.+..+....+++..+      +++.++.-..+.|..||
T Consensus       154 ~~s-~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~------GnlWva~~~~g~V~~~d  226 (295)
T d2ghsa1         154 CFS-PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE------GHIWNARWGEGAVDRYD  226 (295)
T ss_dssp             EEC-TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT------SCEEEEEETTTEEEEEC
T ss_pred             eec-CCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCC------CCEEeeeeCCCceEEec
Confidence            899 5665 4566677889999887543211      11122234455678888877      78887777788999999


Q ss_pred             eeCCCceEEEeecCCceEEEEEC-CCCCcEEEEEec
Q psy17342        299 IKENKPVHSFNEFRDYVMDVQWS-PINPALFATVEV  333 (401)
Q Consensus       299 ~~~~~~~~~~~~~~~~v~~v~~~-~~~~~~l~~~~~  333 (401)
                      . .++.+..+......+++++|- |+.+.++++...
T Consensus       227 p-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         227 T-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             T-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             C-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            5 688888888766679999995 677767777554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.62  E-value=5.2e-06  Score=67.36  Aligned_cols=238  Identities=8%  Similarity=0.044  Sum_probs=119.3

Q ss_pred             EEeCC--CCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC-CC-----cEEEe
Q psy17342        125 CFAKF--NPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN-DG-----RLCSW  196 (401)
Q Consensus       125 ~~~~~--~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg-----~i~~w  196 (401)
                      ..+|+  |..++++.  +|.|.+.|+.+++...       +..+.+.+...+|  +|+|+.|+.... ++     .|.++
T Consensus         5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~-------Lt~~~~~~~~p~~--SPDG~~iaf~~~~~~~~~~~~i~~~   73 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK-------IVSNLGVINNARF--FPDGRKIAIRVMRGSSLNTADLYFY   73 (281)
T ss_dssp             CEEEEEETTEEEEEE--TTEEEEEETTTCCEEE-------EECSSSEEEEEEE--CTTSSEEEEEEEESTTCCEEEEEEE
T ss_pred             ccCCCCCCCEEEEEe--CCcEEEEECCCCCEEE-------EecCCCcccCEEE--CCCCCEEEEEEeeCCCCCceEEEEE
Confidence            35787  86555553  5778888998876432       2456677888899  999999886542 22     24455


Q ss_pred             eccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCc------eEEEEeCCCCCCCceeeecCCCCceeee
Q psy17342        197 SLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG------NVYSACRHGNKAGNVECYEGHEGPVVGL  270 (401)
Q Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~------~i~~~~~~~~~~~~~~~~~~~~~~v~~i  270 (401)
                      +....  ....+..................|+ ++++.++......      .+...+.....   ...  .+.......
T Consensus        74 ~~~~g--~~~~lt~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~  145 (281)
T d1k32a2          74 NGENG--EIKRITYFSGKSTGRRMFTDVAGFD-PDGNLIISTDAMQPFSSMTCLYRVENDGIN---FVP--LNLGPATHI  145 (281)
T ss_dssp             ETTTT--EEEECCCCCEEEETTEECSEEEEEC-TTCCEEEEECTTSSSTTCCEEEEEEGGGTE---EEE--CCSCSCSEE
T ss_pred             EecCC--ceEEeeecCCCccCccccccccccC-CCCCEEEEEEccCCCccceeeeeecCCCce---eEE--ecCCcccee
Confidence            54431  1111111100011123345678899 7888887653321      23333333211   111  111221222


Q ss_pred             ecCccCCCCCCCcEEEEEeCC-----------CeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecC--CEE
Q psy17342        271 SSHRAQGHIDFSHLYLTSSYD-----------WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVA--GRV  337 (401)
Q Consensus       271 ~~~~~~~~~~~~~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d--~~i  337 (401)
                      . .+..     ...++....+           ............. ..............++++.  ++.....+  ..|
T Consensus       146 ~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l  216 (281)
T d1k32a2         146 L-FADG-----RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAF-KKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQI  216 (281)
T ss_dssp             E-EETT-----EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEE-EEEECCSSCCEEEEEETTE--EEEEECTTSSCEE
T ss_pred             e-ecCC-----CeEEEeeccccceeeeeccCCcceeeeeccccce-eeccCCccccceeeeeccc--cceecccccccce
Confidence            2 2221     2222222211           1112222222222 2222233444555666653  34444333  367


Q ss_pred             EEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCccceee
Q psy17342        338 DLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGIACLK  396 (401)
Q Consensus       338 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~~~l~  396 (401)
                      .++|+.+...... .   . ........|+|||+.|+. ..++.|+++|+.+++.+.+.
T Consensus       217 ~~~d~~g~~~~~l-t---~-~~~~~~~~~SpDG~~I~f-~~~~~l~~~d~~~g~~~~i~  269 (281)
T d1k32a2         217 YSTDLDGKDLRKH-T---S-FTDYYPRHLNTDGRRILF-SKGGSIYIFNPDTEKIEKIE  269 (281)
T ss_dssp             EEEETTSCSCEEC-C---C-CCSSCEEEEEESSSCEEE-EETTEEEEECTTTCCEEECC
T ss_pred             EEEeCCCCceEEe-e---c-CCCcccccCcCCCCEEEE-EeCCEEEEEECCCCCEEEec
Confidence            7778876553322 1   1 122233568999998876 44678999999998765553

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.54  E-value=5e-06  Score=67.45  Aligned_cols=103  Identities=5%  Similarity=-0.077  Sum_probs=65.4

Q ss_pred             EecCC--CCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCC-----eEE
Q psy17342         72 DWSTQ--HPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSG-----QIV  144 (401)
Q Consensus        72 ~~~~~--~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg-----~v~  144 (401)
                      ..+|+  |+.++..+           ++.|.+.|+.+++.  +....+.+.+...+|||||+.+.++...++     .|.
T Consensus         5 ~~sPdi~G~~v~f~~-----------~~dl~~~d~~~g~~--~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~   71 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-----------CDDLWEHDLKSGST--RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLY   71 (281)
T ss_dssp             CEEEEEETTEEEEEE-----------TTEEEEEETTTCCE--EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEE
T ss_pred             ccCCCCCCCEEEEEe-----------CCcEEEEECCCCCE--EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEE
Confidence            35788  99998887           77899999986653  233455677899999999966666654433     366


Q ss_pred             EEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeC
Q psy17342        145 LWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISN  189 (401)
Q Consensus       145 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~  189 (401)
                      +++..+++...+..................|  +|+++.|+....
T Consensus        72 ~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~--spdg~~l~~~~~  114 (281)
T d1k32a2          72 FYNGENGEIKRITYFSGKSTGRRMFTDVAGF--DPDGNLIISTDA  114 (281)
T ss_dssp             EEETTTTEEEECCCCCEEEETTEECSEEEEE--CTTCCEEEEECT
T ss_pred             EEEecCCceEEeeecCCCccCcccccccccc--CCCCCEEEEEEc
Confidence            7777666543221111111122234466778  889988877543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=4.2e-06  Score=73.33  Aligned_cols=206  Identities=10%  Similarity=0.030  Sum_probs=119.8

Q ss_pred             EEeecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc---------CCceE
Q psy17342        174 SVIGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC---------EDGNV  244 (401)
Q Consensus       174 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---------~d~~i  244 (401)
                      .|  .+++.++. -..+|.|.+||+.+... ...+...    ......+....++ ||++.++...         ..+.+
T Consensus        23 ~W--~~~~~~~~-~~~~g~i~~~~~~~~~~-~~l~~~~----~~~~~~~~~~~~S-pD~~~vl~~~~~~~~~r~s~~~~~   93 (465)
T d1xfda1          23 KW--ISDTEFIY-REQKGTVRLWNVETNTS-TVLIEGK----KIESLRAIRYEIS-PDREYALFSYNVEPIYQHSYTGYY   93 (465)
T ss_dssp             CB--SSSSCBCC-CCSSSCEEEBCGGGCCC-EEEECTT----TTTTTTCSEEEEC-TTSSEEEEEESCCCCSSSCCCSEE
T ss_pred             EE--eCCCcEEE-EeCCCcEEEEECCCCCE-EEEEcCc----cccccccceeEEC-CCCCeEEEEEcccceeEeeccccE
Confidence            46  66665544 45678899999976332 2111111    1122356677888 8999888764         35678


Q ss_pred             EEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEee-cCC----------
Q psy17342        245 YSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNE-FRD----------  313 (401)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~----------  313 (401)
                      .++|+.......+.........+....|+|+      ++.+|-.. ++.|.+.+...+..++.... ...          
T Consensus        94 ~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPD------G~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~v  166 (465)
T d1xfda1          94 VLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK------GQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL  166 (465)
T ss_dssp             EEEESSSCCCEECCCTTCCSCCCSBCCBCSS------TTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred             EEEEccCCceeeccCccCCccccceeeeccC------CceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchh
Confidence            8999986654334333344556677899999      67777766 77888888876655543321 111          


Q ss_pred             -------ceEEEEECCCCCcEEEEEecCCEE---------------------------------EEEeCCCCCCCcceEE
Q psy17342        314 -------YVMDVQWSPINPALFATVEVAGRV---------------------------------DLWNLNLDTEVPATSA  353 (401)
Q Consensus       314 -------~v~~v~~~~~~~~~l~~~~~d~~i---------------------------------~iwd~~~~~~~~~~~~  353 (401)
                             .-.++.|||||+.++..--.+..+                                 .++|+.++........
T Consensus       167 yeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~  246 (465)
T d1xfda1         167 YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMP  246 (465)
T ss_dssp             HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCC
T ss_pred             hhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEec
Confidence                   124778999998544333233333                                 3344433221100000


Q ss_pred             ---eecCCCCeEEEEecCCCcEEEEEec-C---CcEEEEEeccCcccee
Q psy17342        354 ---IVEGAPALSRVTWTPNGTQLCVGDE-K---GAITMFDVGEVGIACL  395 (401)
Q Consensus       354 ---~~~~~~~v~~~~~s~~g~~l~~~~~-d---g~v~iw~~~~~~~~~l  395 (401)
                         ......-+..+.|++++++++.... +   ..|.++|..+++.+.+
T Consensus       247 ~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~  295 (465)
T d1xfda1         247 PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK  295 (465)
T ss_dssp             CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred             cCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEE
Confidence               0001123677899999987766433 1   2588888888864443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.48  E-value=9.2e-05  Score=60.33  Aligned_cols=225  Identities=10%  Similarity=-0.023  Sum_probs=134.4

Q ss_pred             eEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCCcEEEeeccCC
Q psy17342        122 LSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDGRLCSWSLEML  201 (401)
Q Consensus       122 ~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~  201 (401)
                      -...|.+.+..+..+--..+.|.-||..+++.. .       ......+.++++  .+++.++++ +.+ .+.++|..+.
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~-------~~~~~~~~~i~~--~~dg~l~va-~~~-gl~~~d~~tg   88 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-V-------HALPFMGSALAK--ISDSKQLIA-SDD-GLFLRDTATG   88 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-E-------EECSSCEEEEEE--EETTEEEEE-ETT-EEEEEETTTC
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-E-------EECCCCcEEEEE--ecCCCEEEE-EeC-ccEEeecccc
Confidence            345688766566666657788999998877532 1       123446778887  677776665 444 5888887752


Q ss_pred             CCCccccccccccccCCccceEEEEeccCCCCeEEEEcC----CceEEEEeCCCCCCCceeeecCCCCceeeeecCccCC
Q psy17342        202 SSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE----DGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQG  277 (401)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~  277 (401)
                      . ........   .......+..+.+. +++++.++...    .+.-.+|.+...+   +..+...-..-+.+.|+|+. 
T Consensus        89 ~-~~~l~~~~---~~~~~~~~nd~~vd-~~G~iw~~~~~~~~~~~~g~l~~~~~g~---~~~~~~~~~~~Ng~~~s~d~-  159 (295)
T d2ghsa1          89 V-LTLHAELE---SDLPGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHVAKGK---VTKLFADISIPNSICFSPDG-  159 (295)
T ss_dssp             C-EEEEECSS---TTCTTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEEETTE---EEEEEEEESSEEEEEECTTS-
T ss_pred             e-eeEEeeee---cCCCcccceeeEEC-CCCCEEEEeccccccccceeEeeecCCc---EEEEeeccCCcceeeecCCC-
Confidence            2 11111111   11233467888888 77776555432    1223344333221   22222223345788999884 


Q ss_pred             CCCCCcEEEEEeCCCeEEEEEeeCC------CceE--EEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCc
Q psy17342        278 HIDFSHLYLTSSYDWSVKLWNIKEN------KPVH--SFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVP  349 (401)
Q Consensus       278 ~~~~~~~l~s~~~d~~i~iwd~~~~------~~~~--~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  349 (401)
                          ..++++-+..+.|..|++...      +...  .+....+....+++..+|. +.++.-..+.|..||. .++.+.
T Consensus       160 ----~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp-~G~~~~  233 (295)
T d2ghsa1         160 ----TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDT-DGNHIA  233 (295)
T ss_dssp             ----CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECT-TCCEEE
T ss_pred             ----ceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC-EEeeeeCCCceEEecC-CCcEee
Confidence                345666667889999987431      1111  1122345678999999997 6666656789999995 466555


Q ss_pred             ceEEeecCCCCeEEEEec-CCCcEEEEE
Q psy17342        350 ATSAIVEGAPALSRVTWT-PNGTQLCVG  376 (401)
Q Consensus       350 ~~~~~~~~~~~v~~~~~s-~~g~~l~~~  376 (401)
                      .+..  + ...+++++|- +|.+.|++.
T Consensus       234 ~i~l--P-~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         234 RYEV--P-GKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             EEEC--S-CSBEEEEEEESTTSCEEEEE
T ss_pred             EecC--C-CCceEEEEEeCCCCCEEEEE
Confidence            5543  2 3468999996 676666543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.91  E-value=0.0043  Score=52.12  Aligned_cols=126  Identities=8%  Similarity=-0.034  Sum_probs=74.3

Q ss_pred             ceEEEEecCCCCCeEEEEeccCCCCC-CCCCcEEEEEeCcCCCCCceEEEe--cCCCeeEEEEeCCCCceEEEEecC-Ce
Q psy17342         67 NVTYMDWSTQHPELLLASYHRNKEAP-NEPDGVCLIWNTKFKKTTPEFEFF--CQSPVLSCCFAKFNPYLILGGTYS-GQ  142 (401)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~~~~-~~~d~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~g~~d-g~  142 (401)
                      ++.......+|+.++.+++....+.. ...-..+.+||..++.-.......  +.......++.+++ .+++.|+.+ ..
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~i~v~Gg~~~~~   99 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKK   99 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTC
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCC-cEEEeecCCCcc
Confidence            34445556788889988864432211 111225789999987655443333  23334566788877 677777544 58


Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC------CcEEEeeccC
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND------GRLCSWSLEM  200 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~~wd~~~  200 (401)
                      +.+||..+..-.....    ....... ...+.  .+++..++.++.+      ..+.+||..+
T Consensus       100 ~~~yd~~~~~w~~~~~----~~~~r~~-~~~~~--~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         100 TSLYDSSSDSWIPGPD----MQVARGY-QSSAT--MSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             EEEEEGGGTEEEECCC----CSSCCSS-CEEEE--CTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             eeEecCccCccccccc----ccccccc-cceee--ecCCceeeeccccccccccceeeeecCCC
Confidence            9999988765432211    1111111 23444  5688888887753      3588888865

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=0.0044  Score=49.11  Aligned_cols=228  Identities=10%  Similarity=0.007  Sum_probs=128.7

Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEE-eCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISI-SNDGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      ...|+-.++++......       ......+.++.|  ....+.+.-. ...+.|.-.+++..........+.    ...
T Consensus         9 ~~~I~~~~l~~~~~~~~-------~~~~~~~~~id~--d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~----~~~   75 (266)
T d1ijqa1           9 RHEVRKMTLDRSEYTSL-------IPNLRNVVALDT--EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI----SRD   75 (266)
T ss_dssp             BSSEEEEETTSCCCEEE-------ECSCSSEEEEEE--ETTTTEEEEEETTTTEEEEEEC--------CEEEE----CSS
T ss_pred             CCeEEEEECCCCcceee-------eCCCCceEEEEE--EeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEE----eCC
Confidence            34688889887654322       123446678888  6655555544 455666666654311111111110    112


Q ss_pred             ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEe-CCCeEEEE
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS-YDWSVKLW  297 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~~i~iw  297 (401)
                      ...+..+++.+..+++..+-...+.|.+.++.+...  .............++++|..     +.++.+-. ..+.|.-.
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~--~~~~~~~~~~P~~l~vd~~~-----g~ly~~~~~~~~~I~r~  148 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KTLFRENGSKPRAIVVDPVH-----GFMYWTDWGTPAKIKKG  148 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE--EEEEECTTCCEEEEEEETTT-----TEEEEEECSSSCEEEEE
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceE--EEEEcCCCCCcceEEEEccc-----CeEEEeccCCCcceeEe
Confidence            234567888744555566667778899999876542  23333444567889999874     45555532 23455555


Q ss_pred             EeeCCCceEEEe-ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEE
Q psy17342        298 NIKENKPVHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVG  376 (401)
Q Consensus       298 d~~~~~~~~~~~-~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  376 (401)
                      ++. +.....+. ..-....++++.+.++.++.+-...+.|...++..... ..+............+++. ++.+..+-
T Consensus       149 ~~d-Gs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~-~~~ly~td  225 (266)
T d1ijqa1         149 GLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTD  225 (266)
T ss_dssp             ETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTEEEEEE
T ss_pred             ccC-CCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE-EEEEeCCCcccccEEEEEE-CCEEEEEE
Confidence            554 33334443 23356789999998876777767788999999875432 2222111222345567775 33444444


Q ss_pred             ecCCcEEEEEeccC
Q psy17342        377 DEKGAITMFDVGEV  390 (401)
Q Consensus       377 ~~dg~v~iw~~~~~  390 (401)
                      ..++.|+..+..++
T Consensus       226 ~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         226 IINEAIFSANRLTG  239 (266)
T ss_dssp             TTTTEEEEEETTTC
T ss_pred             CCCCeEEEEECCCC
Confidence            56677877776665

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.81  E-value=0.0045  Score=48.95  Aligned_cols=227  Identities=11%  Similarity=0.014  Sum_probs=130.9

Q ss_pred             CcEEEEEeCcCCCCCc---e-EEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEE
Q psy17342         96 DGVCLIWNTKFKKTTP---E-FEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVF  171 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~---~-~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  171 (401)
                      .+.|+-.+++......   . ....+...+..++|.+.+..+..+-..++.|...+++........      ......+.
T Consensus         9 ~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~------~~~~~~p~   82 (263)
T d1npea_           9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII------RQDLGSPE   82 (263)
T ss_dssp             EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE------CTTCCCEE
T ss_pred             CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEE------Eecccccc
Confidence            5777777776432211   1 122234457889999866556555556788888888765543221      12234678


Q ss_pred             EEEEeecCCceEE-EEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC--CceEEEEe
Q psy17342        172 CMSVIGTQNAHNL-ISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE--DGNVYSAC  248 (401)
Q Consensus       172 ~~~~~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--d~~i~~~~  248 (401)
                      ++++  ..-+..| .+-...+.|.+.+++...  ...  +..    .....+..++++|..+..+.+-..  ...|...+
T Consensus        83 ~iAv--D~~~~~lY~~d~~~~~I~~~~~dg~~--~~~--l~~----~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~  152 (263)
T d1npea_          83 GIAL--DHLGRTIFWTDSQLDRIEVAKMDGTQ--RRV--LFD----TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (263)
T ss_dssp             EEEE--ETTTTEEEEEETTTTEEEEEETTSCS--CEE--EEC----SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             EEEE--eccCCeEEEeccCCCEEEEEecCCce--EEE--Eec----ccccCCcEEEEecccCcEEEeecCCCCcEEEEec
Confidence            8887  5444444 455567789999887422  111  111    123457899999555544444332  33466566


Q ss_pred             CCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEE
Q psy17342        249 RHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALF  328 (401)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l  328 (401)
                      +.+...  .......-.....+++.+..     +.++.+-...+.|...|+........+.+ .....++++.  +..++
T Consensus       153 ~dG~~~--~~i~~~~~~~P~glaiD~~~-----~~lYw~d~~~~~I~~~~~~g~~~~~v~~~-~~~P~~lav~--~~~lY  222 (263)
T d1npea_         153 MDGTNR--RILAQDNLGLPNGLTFDAFS-----SQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLY  222 (263)
T ss_dssp             TTSCCC--EEEECTTCSCEEEEEEETTT-----TEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEE
T ss_pred             CCCCCc--eeeeeecccccceEEEeecC-----cEEEEEeCCCCEEEEEECCCCCeEEEECC-CCCcEEEEEE--CCEEE
Confidence            654432  22222233455788888763     34445555678898888865443333343 2334678776  33466


Q ss_pred             EEEecCCEEEEEeCCCCCCC
Q psy17342        329 ATVEVAGRVDLWNLNLDTEV  348 (401)
Q Consensus       329 ~~~~~d~~i~iwd~~~~~~~  348 (401)
                      .+-...+.|...|..+++..
T Consensus       223 wtd~~~~~I~~~~~~~g~~~  242 (263)
T d1npea_         223 YTDWKTNSVIAMDLAISKEM  242 (263)
T ss_dssp             EEETTTTEEEEEETTTTEEE
T ss_pred             EEECCCCEEEEEECCCCccc
Confidence            77667788888888876543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=0.0055  Score=48.40  Aligned_cols=229  Identities=10%  Similarity=-0.013  Sum_probs=129.8

Q ss_pred             CCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEE-EeCCCcEEEeeccCCCCCccccccccccccCC
Q psy17342        140 SGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLIS-ISNDGRLCSWSLEMLSSPQETRDLQYNNKQTK  218 (401)
Q Consensus       140 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  218 (401)
                      .+.|+-.+++.......... .....+...+..++|  ....+.+.- -..++.|...+++..  ..... +.     ..
T Consensus         9 ~~~I~~~~ld~~~~~~~~~~-~~~~~~~~~~~~ld~--D~~~~~iywsd~~~~~I~~~~l~g~--~~~~v-~~-----~~   77 (263)
T d1npea_           9 TGKIERLPLERNTMKKTEAK-AFLHIPAKVIIGLAF--DCVDKVVYWTDISEPSIGRASLHGG--EPTTI-IR-----QD   77 (263)
T ss_dssp             EEEEEEEEESSSCBCGGGCE-EEEEEEEEEEEEEEE--ETTTTEEEEEETTTTEEEEEESSSC--CCEEE-EC-----TT
T ss_pred             CCeEEEEECCCccccccccc-cccccCCCcEEEEEE--EeCCCEEEEEECCCCeEEEEEcccC--CcEEE-EE-----ec
Confidence            35777777765443211111 112233445777888  555554444 455677888877642  11111 11     12


Q ss_pred             ccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEE
Q psy17342        219 NLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWN  298 (401)
Q Consensus       219 ~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd  298 (401)
                      ...+..+++....+++..+-...+.|.+.++.+....  ............+++.|..     +.++.+-...+..+|+.
T Consensus        78 ~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~--~l~~~~l~~p~~l~vdp~~-----g~ly~t~~~~~~~~I~r  150 (263)
T d1npea_          78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR--VLFDTGLVNPRGIVTDPVR-----GNLYWTDWNRDNPKIET  150 (263)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEECSSCSSEEEEEEETTT-----TEEEEEECCSSSCEEEE
T ss_pred             cccccEEEEeccCCeEEEeccCCCEEEEEecCCceEE--EEecccccCCcEEEEeccc-----CcEEEeecCCCCcEEEE
Confidence            2357888887444555556667789999998754321  2223333567899999985     45555543333444554


Q ss_pred             eeC-CCceEEEe-ecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEE
Q psy17342        299 IKE-NKPVHSFN-EFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVG  376 (401)
Q Consensus       299 ~~~-~~~~~~~~-~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  376 (401)
                      ... +.....+. ..-....++++.+.++.++.+-...+.|...|+........+    ........+++. ++.+..+-
T Consensus       151 ~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~----~~~~~P~~lav~-~~~lYwtd  225 (263)
T d1npea_         151 SHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL----EGLQYPFAVTSY-GKNLYYTD  225 (263)
T ss_dssp             EETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE----ECCCSEEEEEEE-TTEEEEEE
T ss_pred             ecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEE----CCCCCcEEEEEE-CCEEEEEE
Confidence            332 33333332 223466899999887756666667789999998754432222    222334577775 34444444


Q ss_pred             ecCCcEEEEEeccCc
Q psy17342        377 DEKGAITMFDVGEVG  391 (401)
Q Consensus       377 ~~dg~v~iw~~~~~~  391 (401)
                      ...+.|...|..+++
T Consensus       226 ~~~~~I~~~~~~~g~  240 (263)
T d1npea_         226 WKTNSVIAMDLAISK  240 (263)
T ss_dssp             TTTTEEEEEETTTTE
T ss_pred             CCCCEEEEEECCCCc
Confidence            466778888888773

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.62  E-value=0.009  Score=47.01  Aligned_cols=258  Identities=11%  Similarity=0.089  Sum_probs=151.9

Q ss_pred             CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEE
Q psy17342         96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV  175 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  175 (401)
                      ...|.|-|+.+.....+...    ..-+.-.+|.. +.|+.-+ ..++.++|+++.+....       .....+|.--.|
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi----~AdsAIMhP~~-~IiALra-g~~LQiFnletK~klks-------~~~~e~VvfWkW  110 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKA-------HTMTDDVTFWKW  110 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEEC----CCSEEEECSSS-SEEEEEE-TTEEEEEETTTTEEEEE-------EECSSCCCEEEE
T ss_pred             CceEEEEECCCCCcceeccc----chhhhhcCCCC-cEEEEec-CCeEEEEehhHhhhhce-------EEcCCCcEEEEe
Confidence            46889999986655433332    23344557844 6776654 67899999998875422       223446655566


Q ss_pred             eecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc-------CCceEEEEe
Q psy17342        176 IGTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-------EDGNVYSAC  248 (401)
Q Consensus       176 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------~d~~i~~~~  248 (401)
                        -. .+.|+-.+ +..|.-|+++....|...+.....  . ....|-.-..+ ++.++++..+       -.|.+.+|.
T Consensus       111 --is-~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~--L-~~~QIInY~~d-~~~kW~~l~GI~~~~~~i~G~mQLYS  182 (327)
T d1utca2         111 --IS-LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSS--L-AGCQIINYRTD-AKQKWLLLTGISAQQNRVVGAMQLYS  182 (327)
T ss_dssp             --SS-SSEEEEEC-SSEEEEEESSSSCCCEEEEECCGG--G-TTCEEEEEEEC-TTSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             --cC-CCEEEEEc-CCceEEEcccCCCCchhhhhhccc--c-cCceEEEEEEC-CCCCEEEEEeEecCCCceeEEEEEEE
Confidence              33 33444443 347999999765556655554431  1 24566666667 6777765432       236678898


Q ss_pred             CCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeC---CCeEEEEEeeCCC---c---eE--EEee----cCC
Q psy17342        249 RHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY---DWSVKLWNIKENK---P---VH--SFNE----FRD  313 (401)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~---~---~~--~~~~----~~~  313 (401)
                      .+.+   ....++||.+....+.+.-+.   ....+|+-+..   .+++.|-++....   +   .+  .+..    ..+
T Consensus       183 ~er~---~sQ~ieGhaa~F~~~~~~g~~---~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~D  256 (327)
T d1utca2         183 VDRK---VSQPIEGHAASFAQFKMEGNA---EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND  256 (327)
T ss_dssp             TTTT---EEEEECCSEEEEEEECCTTCS---SCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTC
T ss_pred             eccC---cCccccceeeeeEEEEcCCCC---CCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCC
Confidence            8643   466788998877777654321   10245554432   3678888885421   1   11  1111    133


Q ss_pred             ceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEE
Q psy17342        314 YVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITM  384 (401)
Q Consensus       314 ~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~i  384 (401)
                      -..++..++.-. ++..-+.-|.|++||+.++..+..-+.   ....|...+-+.+..=+++...+|.|.-
T Consensus       257 FPvamqvs~kyg-iiyviTK~G~i~lyDleTgt~i~~nRI---s~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         257 FPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRI---SGETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             CEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             cEEEEEeeccCC-EEEEEecCcEEEEEEcccccEEEEeec---CCCceEEeccCCCCceEEEECCCCeEEE
Confidence            455788888765 788888999999999999886544321   2334443333444333444446665543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.55  E-value=0.016  Score=48.19  Aligned_cols=247  Identities=6%  Similarity=-0.005  Sum_probs=131.8

Q ss_pred             CCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCCC-----------------
Q psy17342        129 FNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISNDG-----------------  191 (401)
Q Consensus       129 ~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----------------  191 (401)
                      ||+.+++.-..++.|.+-|++..+...+...     .....+..++....++..+++..+.+.                 
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~i-----Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~  172 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEI-----PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV  172 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEEC-----SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEec-----CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcc
Confidence            5655666666788999999988775443222     233455566553345566777666532                 


Q ss_pred             -cEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCc---------------eE-----------
Q psy17342        192 -RLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDG---------------NV-----------  244 (401)
Q Consensus       192 -~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---------------~i-----------  244 (401)
                       .+..+|..+.   ....++.      -......++++ ++++++++.+.+.               .+           
T Consensus       173 ~~~t~ID~~tm---~V~~QV~------V~g~ld~~~~s-~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~a  242 (459)
T d1fwxa2         173 NVFTAVDADKW---EVAWQVL------VSGNLDNCDAD-YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA  242 (459)
T ss_dssp             EEEEEEETTTT---EEEEEEE------ESSCCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred             eEEEEEecCCc---eEEEEee------eCCChhccccC-CCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHh
Confidence             2445555431   1111111      11234567777 7788877765431               12           


Q ss_pred             ------------EEEeCCCCCC-CceeeecCCCCceeeeecCccCCCCCCCcEEEEEe-CCCeEEEEEeeCCC-------
Q psy17342        245 ------------YSACRHGNKA-GNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSS-YDWSVKLWNIKENK-------  303 (401)
Q Consensus       245 ------------~~~~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~-------  303 (401)
                                  .+.|.+.... ..+..+.. ......+.++|+      ++++++++ .+.++.|+|+++-.       
T Consensus       243 v~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPD------GKyi~VaGKLs~tVSViD~~Ki~~~~~~~~  315 (459)
T d1fwxa2         243 IAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPD------KKHLCVAGKLSPTVTVLDVTRFDAVFYENA  315 (459)
T ss_dssp             HHHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTT------SSEEEEECTTSSBEEEEEGGGHHHHHHSCC
T ss_pred             hhcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCC------CCEEEEeCCcCCcEEEEEehhhhhhhcccC
Confidence                        2223221111 11111221 123457788888      66666555 48999999996421       


Q ss_pred             -ceEEEee---cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC------CCCcceEEeecCCCCeEEE------Eec
Q psy17342        304 -PVHSFNE---FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD------TEVPATSAIVEGAPALSRV------TWT  367 (401)
Q Consensus       304 -~~~~~~~---~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~v~~~------~~s  367 (401)
                       +...+.+   ..-....-+|...|. ...+.--|.+|--|++...      .....+.....-+-.+-.+      ...
T Consensus       316 ~~~~~~~~e~elglgPLht~fd~~g~-aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~  394 (459)
T d1fwxa2         316 DPRSAVVAEPELGLGPLHTAFDGRGN-AYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLD  394 (459)
T ss_dssp             -GGGGEEECCBCCSCEEEEEECTTSE-EEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTT
T ss_pred             CccccEEeecccCcCccccccCCCce-EEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCC
Confidence             1111111   122345678888884 5666778999999998532      2222221111111112222      236


Q ss_pred             CCCcEEEEEec---CC----------cEEEEEeccCccceeeee
Q psy17342        368 PNGTQLCVGDE---KG----------AITMFDVGEVGIACLKFI  398 (401)
Q Consensus       368 ~~g~~l~~~~~---dg----------~v~iw~~~~~~~~~l~~~  398 (401)
                      |+|++|++...   |.          .-++.|+...+++.+.-.
T Consensus       395 ~dgk~l~~~nk~skdrfl~vgpl~pe~~qlidisg~~m~l~~d~  438 (459)
T d1fwxa2         395 ATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDG  438 (459)
T ss_dssp             CCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEE
T ss_pred             CCCCEEEEecccccccccCCCCCCCccceEEEcCCCeeEEEecc
Confidence            78999988752   22          356888876665555443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.015  Score=45.87  Aligned_cols=232  Identities=7%  Similarity=-0.080  Sum_probs=130.2

Q ss_pred             CcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEE
Q psy17342         96 DGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSV  175 (401)
Q Consensus        96 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  175 (401)
                      ...|+-.++++....  ........+.+++|.+....+..+-...+.|.--+++..........  ........+.++++
T Consensus         9 ~~~I~~~~l~~~~~~--~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~--~~~~~~~~p~glAv   84 (266)
T d1ijqa1           9 RHEVRKMTLDRSEYT--SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDIQAPDGLAV   84 (266)
T ss_dssp             BSSEEEEETTSCCCE--EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE--EECSSCSCCCEEEE
T ss_pred             CCeEEEEECCCCcce--eeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEE--EEeCCCCCcceEEE
Confidence            456888888754322  23344567889999987655555544567777767654322111111  01222234556776


Q ss_pred             eecC-CceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEE-cCCceEEEEeCCCCC
Q psy17342        176 IGTQ-NAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVG-CEDGNVYSACRHGNK  253 (401)
Q Consensus       176 ~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~  253 (401)
                        .. .+....+-...+.|.+.++...  ... ..+.     ........++++|..+.++.+. +..+.|...++.+..
T Consensus        85 --D~~~~~lY~~d~~~~~I~v~~~~g~--~~~-~~~~-----~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~  154 (266)
T d1ijqa1          85 --DWIHSNIYWTDSVLGTVSVADTKGV--KRK-TLFR-----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  154 (266)
T ss_dssp             --ETTTTEEEEEETTTTEEEEEETTSS--SEE-EEEE-----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred             --eeccceEEEEecCCCEEEeEecCCc--eEE-EEEc-----CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc
Confidence              43 3444555566778999988742  111 1111     1334578899995455555543 234567777776543


Q ss_pred             CCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeec--CCceEEEEECCCCCcEEEEE
Q psy17342        254 AGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEF--RDYVMDVQWSPINPALFATV  331 (401)
Q Consensus       254 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~v~~~~~~~~~l~~~  331 (401)
                      .  .......-....++++.+..     +.++.+-...+.|...++............  .....++++.. + .++.+-
T Consensus       155 ~--~~l~~~~~~~p~gl~iD~~~-----~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~-~-~ly~td  225 (266)
T d1ijqa1         155 I--YSLVTENIQWPNGITLDLLS-----GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-D-KVFWTD  225 (266)
T ss_dssp             E--EEEECSSCSCEEEEEEETTT-----TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-T-EEEEEE
T ss_pred             e--ecccccccceeeEEEeeccc-----cEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC-C-EEEEEE
Confidence            2  22222233456788888873     445555566788988888654433333332  23456777773 3 477776


Q ss_pred             ecCCEEEEEeCCCCCCCcc
Q psy17342        332 EVAGRVDLWNLNLDTEVPA  350 (401)
Q Consensus       332 ~~d~~i~iwd~~~~~~~~~  350 (401)
                      ..++.|...+..++.....
T Consensus       226 ~~~~~I~~~~~~~g~~~~~  244 (266)
T d1ijqa1         226 IINEAIFSANRLTGSDVNL  244 (266)
T ss_dssp             TTTTEEEEEETTTCCCCEE
T ss_pred             CCCCeEEEEECCCCcceEE
Confidence            6778888888777665443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.29  E-value=0.035  Score=46.09  Aligned_cols=193  Identities=8%  Similarity=0.034  Sum_probs=110.7

Q ss_pred             CceEEEEEe-CCCcEEEeeccCCCCCccccccccccccCCccceEEEEecc-CCCCeEEEEcCCc---------------
Q psy17342        180 NAHNLISIS-NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQ-NDVNNFVVGCEDG---------------  242 (401)
Q Consensus       180 ~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~---------------  242 (401)
                      ||++++... .+.+|.+.|++... ..+..+++      ....+..+...+ ++..+++.+++..               
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fk-t~kIi~iP------n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~  170 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMK-CDAILEIP------NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVAN  170 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTE-EEEEEECS------SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-
T ss_pred             ceeEEEEEcCCCceEEEEECccee-eeEEEecC------CCCCCceeecccCCCeEEEEccCccccccCCCCccccchhh
Confidence            677777665 57789999998633 22333332      223344444331 3455666555422               


Q ss_pred             ---eEEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCC---------------eEEEE-------
Q psy17342        243 ---NVYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDW---------------SVKLW-------  297 (401)
Q Consensus       243 ---~i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~---------------~i~iw-------  297 (401)
                         .+.+.|....+  ...... -.+....+.++|+      ++++++.+.+.               .+.++       
T Consensus       171 y~~~~t~ID~~tm~--V~~QV~-V~g~ld~~~~s~d------GK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~  241 (459)
T d1fwxa2         171 YVNVFTAVDADKWE--VAWQVL-VSGNLDNCDADYE------GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK  241 (459)
T ss_dssp             EEEEEEEEETTTTE--EEEEEE-ESSCCCCEEECSS------SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred             cceEEEEEecCCce--EEEEee-eCCChhccccCCC------CCEEEEEeccccCCcchhhcccccceEEEEechHHhHH
Confidence               24456665322  222222 1234556778887      67777765431               23333       


Q ss_pred             ----------------EeeC--C-CceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCC--------CCCcc
Q psy17342        298 ----------------NIKE--N-KPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLD--------TEVPA  350 (401)
Q Consensus       298 ----------------d~~~--~-~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~--------~~~~~  350 (401)
                                      |.+.  + ..+..+.. ......+.++|||+++++++..+.++.++|++.-        .....
T Consensus       242 av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~  320 (459)
T d1fwxa2         242 AIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA  320 (459)
T ss_dssp             HHHHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred             hhhcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence                            3322  1 12223333 2335678999999988888889999999999631        11111


Q ss_pred             eEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEecc
Q psy17342        351 TSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGE  389 (401)
Q Consensus       351 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~  389 (401)
                      +.......-.-...+|+..|....+---|..|.-|++..
T Consensus       321 ~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         321 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             EEeecccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence            211112233456789999887666777899999999864

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.22  E-value=0.016  Score=48.43  Aligned_cols=97  Identities=19%  Similarity=0.080  Sum_probs=54.4

Q ss_pred             EEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC-CcEEEeeccCCCCCccccccccccccCCccc
Q psy17342        143 IVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND-GRLCSWSLEMLSSPQETRDLQYNNKQTKNLA  221 (401)
Q Consensus       143 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  221 (401)
                      +.+||..++.-......   ...|.......++  .+++..++.|+.+ ..+.+||..+.. -.....+..     .. .
T Consensus        54 ~~~yd~~t~~w~~~~~~---~~~~~~~~~~~~~--~~~g~i~v~Gg~~~~~~~~yd~~~~~-w~~~~~~~~-----~r-~  121 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVT---VTKHDMFCPGISM--DGNGQIVVTGGNDAKKTSLYDSSSDS-WIPGPDMQV-----AR-G  121 (387)
T ss_dssp             EEEECTTTCCBCCCEEE---ECSCCCSSCEEEE--CTTSCEEEECSSSTTCEEEEEGGGTE-EEECCCCSS-----CC-S
T ss_pred             EEEEECCCCcEeecCCC---CCCcccceeEEEE--ecCCcEEEeecCCCcceeEecCccCc-ccccccccc-----cc-c
Confidence            77899988764322111   1223222334555  6889888888665 579999987521 111111111     11 1


Q ss_pred             eEEEEeccCCCCeEEEEcCC------ceEEEEeCCCC
Q psy17342        222 VLSLAFPQNDVNNFVVGCED------GNVYSACRHGN  252 (401)
Q Consensus       222 v~~~~~~~~~~~~l~~~~~d------~~i~~~~~~~~  252 (401)
                      -.+.+.. .++++++.|+.+      ..+.+||....
T Consensus       122 ~~~~~~~-~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         122 YQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             SCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             ccceeee-cCCceeeeccccccccccceeeeecCCCC
Confidence            2234444 678888888643      35788888754

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.03  E-value=0.075  Score=45.08  Aligned_cols=261  Identities=7%  Similarity=-0.059  Sum_probs=131.5

Q ss_pred             ceEEEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEec-------
Q psy17342         67 NVTYMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTY-------  139 (401)
Q Consensus        67 ~v~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~-------  139 (401)
                      .+..+++||++++++.+--     ..|+....|+++|+.+++.+......  .....++|.+++..++.+.-.       
T Consensus       126 ~~~~~~~Spd~~~la~s~d-----~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~  198 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLS-----ASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSD  198 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEE-----ETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred             eecceEecCCCCEEEEEec-----cccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCccc
Confidence            3456788999998886651     13345678999999988765533221  223578999988666665421       


Q ss_pred             --------CCeEEEEECCCCCCCceeeccccccCC--CCcEEEEEEeecCCceEEEEEeC---CCcEEEe--eccCCCCC
Q psy17342        140 --------SGQIVLWDTRVQKKTPVHRTPLSVMAH--THPVFCMSVIGTQNAHNLISISN---DGRLCSW--SLEMLSSP  204 (401)
Q Consensus       140 --------dg~v~iw~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~~~---dg~i~~w--d~~~~~~~  204 (401)
                              ...|..+.+.+.......    .+...  ...+..+..  +.++.+++....   +....+|  ++......
T Consensus       199 ~~~~~~~~~~~v~~h~lgt~~~~d~~----v~~e~d~~~~~~~~~~--s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~  272 (430)
T d1qfma1         199 GTETSTNLHQKLYYHVLGTDQSEDIL----CAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNG  272 (430)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGCEE----EECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred             ccccccCCcceEEEEECCCCcccccc----ccccccCCceEEeeec--cCCcceeeEEeeccCCccEEEEEeeCCCcccc
Confidence                    125777777765433211    11222  233555555  788887664322   3334444  44321111


Q ss_pred             ccccccccccccCCccceEEEEeccCCCCeEEEEc---CCceEEEEeCCCCCCCceee-ecCCCCceeeeecCccCCCCC
Q psy17342        205 QETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC---EDGNVYSACRHGNKAGNVEC-YEGHEGPVVGLSSHRAQGHID  280 (401)
Q Consensus       205 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d~~i~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~  280 (401)
                      ...................-+..  .++.+++...   .++.|...++.......... +..+...+..-.+...     
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~-----  345 (430)
T d1qfma1         273 ITGILKWVKLIDNFEGEYDYVTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR-----  345 (430)
T ss_dssp             SCSSCCCEEEECSSSSCEEEEEE--ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEET-----
T ss_pred             cccccceeEeecccccceEEEec--CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEE-----
Confidence            11000000000011112222221  1222333332   24566666665332222222 2334444433233222     


Q ss_pred             CCcEEE-EEeCCC--eEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEec---CCEEEEEeCCCCCCC
Q psy17342        281 FSHLYL-TSSYDW--SVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEV---AGRVDLWNLNLDTEV  348 (401)
Q Consensus       281 ~~~~l~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~  348 (401)
                       +.+|+ .--.++  .|+++++..++....+....+.+..+...++...++++.+.   =.++.-+|+.+++..
T Consensus       346 -~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~  418 (430)
T d1qfma1         346 -SNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELE  418 (430)
T ss_dssp             -TTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCC
T ss_pred             -CCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCcc
Confidence             34554 444454  58889988776655444445566666666666544444331   167888999887654

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.88  E-value=0.044  Score=44.71  Aligned_cols=206  Identities=13%  Similarity=0.127  Sum_probs=108.8

Q ss_pred             CCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeC----CCC-ceEEEEe-cC---CeEEEEECCCCCCCcee-ecc-ccc
Q psy17342         95 PDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAK----FNP-YLILGGT-YS---GQIVLWDTRVQKKTPVH-RTP-LSV  163 (401)
Q Consensus        95 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~----~~~-~~l~~g~-~d---g~v~iw~~~~~~~~~~~-~~~-~~~  163 (401)
                      ..+-|.+||++ ++.+...   ..+.++.+..-.    .+. .-++.++ .+   .+|.+|.+......... ..+ ...
T Consensus        48 K~~Gl~vYdL~-G~~l~~~---~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p~  123 (353)
T d1h6la_          48 KKSGLAVYSLE-GKMLHSY---HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRPI  123 (353)
T ss_dssp             TTSCCEEEETT-CCEEEEC---CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCSSSCE
T ss_pred             CcCCEEEEcCC-CcEEEec---ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccccccccc
Confidence            56679999997 5554332   245666665442    111 2234443 22   35888887643221100 000 000


Q ss_pred             cCCCCcEEEEEEeecCC-ce-EEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCC
Q psy17342        164 MAHTHPVFCMSVIGTQN-AH-NLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCED  241 (401)
Q Consensus       164 ~~~~~~v~~~~~~~~~~-~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  241 (401)
                      ..-...+..+|...++. +. +++....+|.+..|.+...........+..  .......+..+.+. .....|.++-++
T Consensus       124 ~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr--~f~~~~q~EGCVvD-de~~~LyisEE~  200 (353)
T d1h6la_         124 ASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVR--AFKMNSQTEGMAAD-DEYGSLYIAEED  200 (353)
T ss_dssp             ECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEE--EEECSSCEEEEEEE-TTTTEEEEEETT
T ss_pred             ccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeee--ccCCCCccceEEEe-CCCCcEEEecCc
Confidence            11123466777644444 33 566777889999998754222211111111  11233467888888 777888888888


Q ss_pred             ceEEEEeCCCCCCC---ceeeecC--CCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeC-CCceEEEe
Q psy17342        242 GNVYSACRHGNKAG---NVECYEG--HEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKE-NKPVHSFN  309 (401)
Q Consensus       242 ~~i~~~~~~~~~~~---~~~~~~~--~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~  309 (401)
                      .-|+.++.......   .+....+  ....+..|+.-....  ..+-+|+|.-.+.+..|||... .+.+..|.
T Consensus       201 ~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~--~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         201 EAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAAD--GKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             TEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGG--GCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             cceEEEEeccCCCccceeeecccCccccCCccccEEEEcCC--CCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            88877776533221   1111111  345666676543210  0033444444588999999876 35666664

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.83  E-value=0.14  Score=45.11  Aligned_cols=53  Identities=9%  Similarity=0.068  Sum_probs=32.9

Q ss_pred             CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        335 GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       335 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      |.|.-+|+++++.+............+    .+-.+.++++|+.||.++.+|.++++
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~----l~TagglVf~G~~dg~l~A~Da~tGe  496 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGT----LYTKGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBC----EEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcce----eEecCCEEEEECCCCeEEEEECCCCc
Confidence            356667777776554433211111111    12246678889999999999999985

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.68  E-value=0.18  Score=44.40  Aligned_cols=81  Identities=11%  Similarity=-0.010  Sum_probs=49.2

Q ss_pred             CeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc
Q psy17342        292 WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT  371 (401)
Q Consensus       292 ~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  371 (401)
                      |.|.-+|+.+++.+.+.... .+..+-..+-.+. +++.++.||.++.+|.++++.+..+........  .-+.|..||+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~Tagg-lVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a--~P~ty~~dGk  519 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGG-LVWYATLDGYLKALDNKDGKELWNFKMPSGGIG--SPMTYSFKGK  519 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCS--CCEEEEETTE
T ss_pred             ccEEEeccCCCceeeEcCCC-CCCCcceeEecCC-EEEEECCCCeEEEEECCCCcEEEEEECCCCcee--cceEEEECCE
Confidence            46777788888877666542 1111111121233 677799999999999999998877654322222  2255666885


Q ss_pred             -EEEEE
Q psy17342        372 -QLCVG  376 (401)
Q Consensus       372 -~l~~~  376 (401)
                       ||++.
T Consensus       520 qYi~v~  525 (571)
T d2ad6a1         520 QYIGSM  525 (571)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence             55443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.38  E-value=0.19  Score=40.90  Aligned_cols=194  Identities=11%  Similarity=0.078  Sum_probs=100.9

Q ss_pred             EEEEeecCCceEEEEEeC------------CCcEEEeeccCCCCCccccccccccccCCccceEEEEe--ccCCCC-eEE
Q psy17342        172 CMSVIGTQNAHNLISISN------------DGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAF--PQNDVN-NFV  236 (401)
Q Consensus       172 ~~~~~~~~~~~~l~s~~~------------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~-~l~  236 (401)
                      ++..  .+++..+++++.            .|.|.++|+.........+...........-....+.+  . .++. +|+
T Consensus        39 Di~~--~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~-~dg~~~L~  115 (340)
T d1v04a_          39 DLEI--LPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID-DDNTVYLL  115 (340)
T ss_dssp             EEEE--CTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEEC-TTCCEEEE
T ss_pred             eEEE--CCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEc-CCCcEEEE
Confidence            5665  677776666542            48899999875333222222221100001111222322  2 3343 344


Q ss_pred             EE---cCCceEEEEeCCCCCCCc--eeeecC-CCCceeeeecCccCCCCCCCcEEEEEeC---------------CCeEE
Q psy17342        237 VG---CEDGNVYSACRHGNKAGN--VECYEG-HEGPVVGLSSHRAQGHIDFSHLYLTSSY---------------DWSVK  295 (401)
Q Consensus       237 ~~---~~d~~i~~~~~~~~~~~~--~~~~~~-~~~~v~~i~~~~~~~~~~~~~~l~s~~~---------------d~~i~  295 (401)
                      +.   .....|.++++.......  +.++.. .....+++.+..+      +.+++|-..               -+...
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~------g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~  189 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGP------EHFYATNDHYFIDPYLKSWEMHLGLAWSF  189 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEET------TEEEEEESCSCCSHHHHHHHHHTTCCCEE
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecC------CCEEEecCccCcChhhhhhhHhhcCCcee
Confidence            43   245567777765332211  112221 1233567776665      566666311               12344


Q ss_pred             EEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecC-CCcEEE
Q psy17342        296 LWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTP-NGTQLC  374 (401)
Q Consensus       296 iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~  374 (401)
                      +|....++. ......-...+.|+++|+++.++++-+..+.|+.|++.......... ...-....-.+.+.+ +|.+.+
T Consensus       190 v~~~~~~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~-~~~l~~~pDNi~~d~~~g~lwv  267 (340)
T d1v04a_         190 VTYYSPNDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLR-VLSFDTLVDNISVDPVTGDLWV  267 (340)
T ss_dssp             EEEECSSCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEE-EEECSSEEEEEEECTTTCCEEE
T ss_pred             EEEEcCCce-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEE-EecCCCCCCccEEecCCCEEEE
Confidence            555444433 33323345689999999998888888889999999997654332222 122334456677765 445444


Q ss_pred             EE
Q psy17342        375 VG  376 (401)
Q Consensus       375 ~~  376 (401)
                      .+
T Consensus       268 a~  269 (340)
T d1v04a_         268 GC  269 (340)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.15  E-value=0.39  Score=42.40  Aligned_cols=80  Identities=14%  Similarity=0.013  Sum_probs=50.1

Q ss_pred             CeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc
Q psy17342        292 WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT  371 (401)
Q Consensus       292 ~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  371 (401)
                      |.|.-||+.+++.+.+... ..+..+-.++-.+. ++..|+.||.++.+|.++++.+..+..........  +.|..+|+
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagg-lVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P--~tY~~dGk  528 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMATAGD-LVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYP--MTYTHKGT  528 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTE
T ss_pred             ceEEEEeCCCCceecccCC-CCCCccceeEecCC-EEEEECCCCeEEEEECCCCcEeeEEECCCCcccCC--eEEEECCE
Confidence            4677888888887766543 22222222223444 66779999999999999999887766433333222  45556885


Q ss_pred             -EEEE
Q psy17342        372 -QLCV  375 (401)
Q Consensus       372 -~l~~  375 (401)
                       ||++
T Consensus       529 QYvav  533 (596)
T d1w6sa_         529 QYVAI  533 (596)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence             4543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.01  E-value=0.46  Score=41.94  Aligned_cols=53  Identities=15%  Similarity=0.052  Sum_probs=34.0

Q ss_pred             CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        335 GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       335 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      |.|.-||+.+++........    .+...-..+-.|.+++.|+.||.++.+|.++++
T Consensus       453 G~l~A~D~~TG~~~W~~~~~----~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe  505 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER----FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD  505 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ceEEEEeCCCCceecccCCC----CCCccceeEecCCEEEEECCCCeEEEEECCCCc
Confidence            45777777777654433221    111111223357788889999999999999995

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.00  E-value=0.36  Score=40.66  Aligned_cols=249  Identities=12%  Similarity=0.085  Sum_probs=122.4

Q ss_pred             eeEEEEeCCCCceEEEEecCC----eEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEEeCC------
Q psy17342        121 VLSCCFAKFNPYLILGGTYSG----QIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISISND------  190 (401)
Q Consensus       121 v~~~~~~~~~~~~l~~g~~dg----~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------  190 (401)
                      +...+++|++..++++-+..|    .|++.|+.+++.....   +  .  ......+.|  .+++..|+....+      
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~---i--~--~~~~~~~~W--~~D~~~~~Y~~~~~~~~~~  197 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV---L--E--RVKFSCMAW--THDGKGMFYNAYPQQDGKS  197 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE---E--E--EECSCCEEE--CTTSSEEEEEECCCCSSCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc---c--c--cccccceEE--cCCCCEEEEEEeccccCcc
Confidence            345678998866666655555    5999999998753211   1  0  011135778  7888877655432      


Q ss_pred             ----------CcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcC---Cc--eEEEEeCCCCCCC
Q psy17342        191 ----------GRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCE---DG--NVYSACRHGNKAG  255 (401)
Q Consensus       191 ----------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~--~i~~~~~~~~~~~  255 (401)
                                ..|..+.+.+..  .....+..  .......+..+..+ .++++++....   +.  .+++.+.......
T Consensus       198 ~~~~~~~~~~~~v~~h~lgt~~--~~d~~v~~--e~d~~~~~~~~~~s-~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~  272 (430)
T d1qfma1         198 DGTETSTNLHQKLYYHVLGTDQ--SEDILCAE--FPDEPKWMGGAELS-DDGRYVLLSIREGCDPVNRLWYCDLQQESNG  272 (430)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCG--GGCEEEEC--CTTCTTCEEEEEEC-TTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred             cccccccCCcceEEEEECCCCc--cccccccc--cccCCceEEeeecc-CCcceeeEEeeccCCccEEEEEeeCCCcccc
Confidence                      146666665421  11111111  01122335556666 77777664322   22  2445554432211


Q ss_pred             c------eeeecCCCCceeeeecCccCCCCCCCcEEEEEeC---CCeEEEEEeeCCCc--eEEEe-ecCCceEEEEECCC
Q psy17342        256 N------VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSY---DWSVKLWNIKENKP--VHSFN-EFRDYVMDVQWSPI  323 (401)
Q Consensus       256 ~------~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~--~~~~~-~~~~~v~~v~~~~~  323 (401)
                      .      ............-+.. ..      ..+++....   ++.|...++.....  ...+- .+...+..-.+...
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~  345 (430)
T d1qfma1         273 ITGILKWVKLIDNFEGEYDYVTN-EG------TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR  345 (430)
T ss_dssp             SCSSCCCEEEECSSSSCEEEEEE-ET------TEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEET
T ss_pred             cccccceeEeecccccceEEEec-CC------ceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEE
Confidence            1      1111111222222221 11      233333332   35666666654322  12333 34444544344443


Q ss_pred             CCcEEEEEecCC--EEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEec----CCcEEEEEeccCccc
Q psy17342        324 NPALFATVEVAG--RVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDE----KGAITMFDVGEVGIA  393 (401)
Q Consensus       324 ~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----dg~v~iw~~~~~~~~  393 (401)
                      +..+++....++  .|+++++..+....   ........+..+...++...+...-.    =.+++-+|+.+++++
T Consensus       346 ~~~lvl~~~~~~~~~l~v~~~~~~~~~~---~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~  418 (430)
T d1qfma1         346 SNFLVLCYLHDVKNTLQLHDLATGALLK---IFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELE  418 (430)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEE---EECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCC
T ss_pred             CCEEEEEEEcCCEeEEEEEECCCCcEEE---ecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCcc
Confidence            434555655664  58889988765422   22333455666666666554433322    267999999988653

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.97  E-value=0.11  Score=45.81  Aligned_cols=95  Identities=14%  Similarity=0.114  Sum_probs=60.6

Q ss_pred             CeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc
Q psy17342        292 WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT  371 (401)
Q Consensus       292 ~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  371 (401)
                      |.+.-||+.+++.+.+.+... +..+=..+-.+. ++.+|+.||.++.+|.++++.+..+..........  +.|..+|+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagg-lVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~Gk  532 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGN-VVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP--STYMVDGR  532 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCC-EEEEECCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCE
Confidence            568888888888887776532 221111222454 67789999999999999999887766533322222  45556886


Q ss_pred             -EEEEEec----------------CCcEEEEEeccC
Q psy17342        372 -QLCVGDE----------------KGAITMFDVGEV  390 (401)
Q Consensus       372 -~l~~~~~----------------dg~v~iw~~~~~  390 (401)
                       ||++.+.                .+.|.+|.+...
T Consensus       533 QYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l~g~  568 (573)
T d1kb0a2         533 QYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGK  568 (573)
T ss_dssp             EEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCB
T ss_pred             EEEEEEeCCCcccccccccccCCCCCEEEEEEeCCc
Confidence             4443222                236888888654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.83  E-value=0.3  Score=38.30  Aligned_cols=231  Identities=9%  Similarity=0.084  Sum_probs=129.8

Q ss_pred             EEEecCCCCCeEEEEeccCCCCCCCCCcEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECC
Q psy17342         70 YMDWSTQHPELLLASYHRNKEAPNEPDGVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTR  149 (401)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~  149 (401)
                      +.-.+|..+-||.-+           ..++.++|+++.+.+..+.+  ..+|.-=.|-.+  +.|+--+ +..|+-|+++
T Consensus        67 sAIMhP~~~IiALra-----------g~~LQiFnletK~klks~~~--~e~VvfWkWis~--~~L~lVT-~taVYHW~~~  130 (327)
T d1utca2          67 SAIMNPASKVIALKA-----------GKTLQIFNIEMKSKMKAHTM--TDDVTFWKWISL--NTVALVT-DNAVYHWSME  130 (327)
T ss_dssp             EEEECSSSSEEEEEE-----------TTEEEEEETTTTEEEEEEEC--SSCCCEEEESSS--SEEEEEC-SSEEEEEESS
T ss_pred             hhhcCCCCcEEEEec-----------CCeEEEEehhHhhhhceEEc--CCCcEEEEecCC--CEEEEEc-CCceEEEccc
Confidence            345678876666655           67999999998766655544  567777778753  4555443 5689999996


Q ss_pred             CCCCCcee--eccccccCCCCcEEEEEEeecCCceEEEEEe---C----CCcEEEeeccCCCCCccccccccccccCCcc
Q psy17342        150 VQKKTPVH--RTPLSVMAHTHPVFCMSVIGTQNAHNLISIS---N----DGRLCSWSLEMLSSPQETRDLQYNNKQTKNL  220 (401)
Q Consensus       150 ~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~----dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
                      ... .|..  ...-.+  ....|..-..  +++.+.++..+   .    .|.+.+|..+.  ...+.       ..+|..
T Consensus       131 g~s-~P~k~fdR~~~L--~~~QIInY~~--d~~~kW~~l~GI~~~~~~i~G~mQLYS~er--~~sQ~-------ieGhaa  196 (327)
T d1utca2         131 GES-QPVKMFDRHSSL--AGCQIINYRT--DAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQP-------IEGHAA  196 (327)
T ss_dssp             SSC-CCEEEEECCGGG--TTCEEEEEEE--CTTSCEEEEEEEEEETTEEEEEEEEEETTT--TEEEE-------ECCSEE
T ss_pred             CCC-Cchhhhhhcccc--cCceEEEEEE--CCCCCEEEEEeEecCCCceeEEEEEEEecc--CcCcc-------ccceee
Confidence            533 2321  111111  1234444444  77777666432   1    35688888764  11111       233444


Q ss_pred             ceEEEEeccCC---CCeEEEE---cCCceEEEEeCCCCCC-Cc------eeeec---CCCCceeeeecCccCCCCCCCcE
Q psy17342        221 AVLSLAFPQND---VNNFVVG---CEDGNVYSACRHGNKA-GN------VECYE---GHEGPVVGLSSHRAQGHIDFSHL  284 (401)
Q Consensus       221 ~v~~~~~~~~~---~~~l~~~---~~d~~i~~~~~~~~~~-~~------~~~~~---~~~~~v~~i~~~~~~~~~~~~~~  284 (401)
                      ....+.+. .+   ...++.+   ...+.+++.++..... ..      ...+.   ...+--.++..++.      -..
T Consensus       197 ~F~~~~~~-g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~k------ygi  269 (327)
T d1utca2         197 SFAQFKME-GNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK------HDV  269 (327)
T ss_dssp             EEEEECCT-TCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETT------TTE
T ss_pred             eeEEEEcC-CCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeecc------CCE
Confidence            44444333 11   1223222   2336788887754221 11      11111   11223345666665      357


Q ss_pred             EEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEE
Q psy17342        285 YLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVD  338 (401)
Q Consensus       285 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~  338 (401)
                      +..-+.-|.|.+||++++.++..-+-....|...+-+.....+ ++...+|.|.
T Consensus       270 iyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi-~~VNr~GqVl  322 (327)
T d1utca2         270 VFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGI-IGVNRKGQVL  322 (327)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEE-EEEETTSEEE
T ss_pred             EEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceE-EEECCCCeEE
Confidence            7777889999999999999998877666666654444443333 4444667654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.47  E-value=0.74  Score=40.42  Aligned_cols=53  Identities=15%  Similarity=0.108  Sum_probs=35.4

Q ss_pred             CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCc
Q psy17342        335 GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       335 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      |.|.-+|+.+++.......  +  .++..-..+-.|.++++|+.||.++.+|.++|+
T Consensus       466 G~l~AiD~~TG~i~W~~~~--~--~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe  518 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKE--H--LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEE--S--SCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CeEEEEcCCCCcEEeecCC--C--CCCccceeEEcCCeEEEeCCCCeEEEEECCCCc
Confidence            5677778877775544432  2  122211233467788889999999999999995

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.46  E-value=0.46  Score=41.56  Aligned_cols=95  Identities=12%  Similarity=0.063  Sum_probs=60.7

Q ss_pred             CeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc
Q psy17342        292 WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT  371 (401)
Q Consensus       292 ~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  371 (401)
                      |.+.-+|+.+++.+.++.. ..+..+-.++-.+. ++..++.||.++.+|.++++.+..+..........  +.+..+|+
T Consensus       438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~Tagg-lVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P--~ty~~dGk  513 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP--MTFELAGR  513 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTE
T ss_pred             cceEEEeCCCCeEeeeccC-CCCCCCceeEECCC-EEEEECCCCcEEEEECCCCcEeEEEECCCCccccC--EEEEECCE
Confidence            4677888888888777654 22222212222344 67789999999999999999887766543333322  55566885


Q ss_pred             -EEEEEecC--------------------CcEEEEEeccC
Q psy17342        372 -QLCVGDEK--------------------GAITMFDVGEV  390 (401)
Q Consensus       372 -~l~~~~~d--------------------g~v~iw~~~~~  390 (401)
                       ||++....                    +.|.+|.+...
T Consensus       514 qyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~F~L~g~  553 (560)
T d1kv9a2         514 QYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGK  553 (560)
T ss_dssp             EEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCC
T ss_pred             EEEEEEeCCCcccccccccccccccCCCCCEEEEEEeCCC
Confidence             55543322                    35888888754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.37  E-value=0.78  Score=40.06  Aligned_cols=54  Identities=11%  Similarity=0.145  Sum_probs=35.3

Q ss_pred             CEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEEeccCcc
Q psy17342        335 GRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFDVGEVGI  392 (401)
Q Consensus       335 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~~~~~~~  392 (401)
                      |.|.-+|+.+++.+.......    +...-..+-.|.++++|+.||.++.+|.+++++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~----~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~  491 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPT----HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA  491 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cceEEEeCCCCeEeeeccCCC----CCCCceeEECCCEEEEECCCCcEEEEECCCCcE
Confidence            467777888777555443221    111112233567888899999999999999963

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.26  E-value=0.61  Score=38.19  Aligned_cols=144  Identities=10%  Similarity=0.048  Sum_probs=84.9

Q ss_pred             ceEEEEeccCCCCeEEEEcCCceEEEEeCCC-------CCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCe
Q psy17342        221 AVLSLAFPQNDVNNFVVGCEDGNVYSACRHG-------NKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWS  293 (401)
Q Consensus       221 ~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~-------~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~  293 (401)
                      ...-++++ +...++++|+.++. .+.....       .........+..-..|..++|+-        +.++... ++.
T Consensus        38 ~~~LLAVs-n~~GLl~aa~~~~l-~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~--------d~l~v~~-~~~  106 (381)
T d1xipa_          38 SLQNLDIS-NSKSLFVAASGSKA-VVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHG--------DQVLVST-RNA  106 (381)
T ss_dssp             CCBCEEEE-TTTTEEEEEETTEE-EEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEET--------TEEEEEE-SSE
T ss_pred             ccceEEEe-CCCCEEEEECCCEE-EEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeC--------CEEEEEe-CCC
Confidence            35566777 66777877777764 4543210       00000011111122577788863        4455443 567


Q ss_pred             EEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEE--eecCCCCeEEEEecCCCc
Q psy17342        294 VKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSA--IVEGAPALSRVTWTPNGT  371 (401)
Q Consensus       294 i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~s~~g~  371 (401)
                      +..++...-........-..++.++.++|..   ++....++.+.++++..++..+....  ...-...+.+++|++.|+
T Consensus       107 l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~---~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgk  183 (381)
T d1xipa_         107 LYSLDLEELSEFRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSF  183 (381)
T ss_dssp             EEEEESSSTTCEEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCE
T ss_pred             EEEEEeeccccccccccccccccceecCCce---eEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcE
Confidence            8888876655444444446678899998863   45556689999999988764332110  011135678888888888


Q ss_pred             EEEEEec
Q psy17342        372 QLCVGDE  378 (401)
Q Consensus       372 ~l~~~~~  378 (401)
                      .++++..
T Consensus       184 q~v~~~g  190 (381)
T d1xipa_         184 QSFAWRN  190 (381)
T ss_dssp             EEEEEET
T ss_pred             EEEEeCC
Confidence            8887743

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.19  E-value=0.74  Score=40.43  Aligned_cols=80  Identities=16%  Similarity=0.086  Sum_probs=53.1

Q ss_pred             CeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCc
Q psy17342        292 WSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGT  371 (401)
Q Consensus       292 ~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  371 (401)
                      |.|.-+|+.+++.+.+...+. ++.+-..+..+. ++.+|+.||.++.+|.++++.+..+..........  +.|..+|+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagg-lVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~G~  541 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP--ITWEQDGE  541 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCC-eEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCE
Confidence            567788888888887776532 222222233454 66779999999999999999887776533333322  56677885


Q ss_pred             -EEEE
Q psy17342        372 -QLCV  375 (401)
Q Consensus       372 -~l~~  375 (401)
                       |+++
T Consensus       542 qYv~i  546 (582)
T d1flga_         542 QYLGV  546 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence             4543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.43  Score=37.27  Aligned_cols=32  Identities=19%  Similarity=0.288  Sum_probs=24.5

Q ss_pred             CCcEEEEEecCC-----cEEEEEeccCccceeeeeec
Q psy17342        369 NGTQLCVGDEKG-----AITMFDVGEVGIACLKFITS  400 (401)
Q Consensus       369 ~g~~l~~~~~dg-----~v~iw~~~~~~~~~l~~~~~  400 (401)
                      ++++++.|+.++     .|.+||+.+.....+..++.
T Consensus       242 ~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~  278 (288)
T d1zgka1         242 QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTS  278 (288)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS
T ss_pred             CCEEEEEecCCCCeecceEEEEECCCCEEEECCCCCC
Confidence            788888887654     38899999988777776654

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.14  E-value=0.39  Score=35.32  Aligned_cols=218  Identities=14%  Similarity=0.098  Sum_probs=111.6

Q ss_pred             CCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEeecCCceEEEEE------eCCCcEEEeeccCCCC
Q psy17342        130 NPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVIGTQNAHNLISI------SNDGRLCSWSLEMLSS  203 (401)
Q Consensus       130 ~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~------~~dg~i~~wd~~~~~~  203 (401)
                      +..+++.+...|.+.++-+..++.....+         .+|..... |.+.-.++.-+      -+-..+.+-++...+ 
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---------ePI~~~~~-Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~G-   93 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---------EPINSVLD-PHYGVGRVILVRDVSKGAEQHALFKVNTSRPG-   93 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCS---------SCCSEECE-ECTTBSEEEEEEECSTTSCCEEEEEEETTSTT-
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEec---------ccccCcCC-CccCcceEEEEeehhcCcceeeEEEEccCCCC-
Confidence            44688888889999999998877643322         33333322 12222222211      111224444444322 


Q ss_pred             CccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeecCCCCceeeee--------cCcc
Q psy17342        204 PQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYEGHEGPVVGLS--------SHRA  275 (401)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~v~~i~--------~~~~  275 (401)
                        ...++..    .....|.++++.  +.+...+|+......+|-+++.+.+.+..+.+ -+.|+.+.        +-..
T Consensus        94 --EE~~i~s----pk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPp-FsFVtDI~~d~I~G~g~~~g  164 (313)
T d2hu7a1          94 --EEQRLEA----VKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGG  164 (313)
T ss_dssp             --CEEECTT----SCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEET
T ss_pred             --eeeEecC----CceEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCC-cceEEeccCCeEEEEeeecC
Confidence              2222221    123577888875  67778888888888888777665444444432 22333332        2111


Q ss_pred             CCCCCCCcEEEEEeC-CCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEec----CCEEEEEeCCCCCCCcc
Q psy17342        276 QGHIDFSHLYLTSSY-DWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEV----AGRVDLWNLNLDTEVPA  350 (401)
Q Consensus       276 ~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~  350 (401)
                      +     ..-|.++.. .|.++|++.           ..+.++.....+..+ + +++-+    .--| -+|+++++....
T Consensus       165 ~-----~~sfF~adl~SG~lri~tp-----------keGS~~~ay~~~gnK-V-~sdyEt~gEsywi-t~D~~s~~yerv  225 (313)
T d2hu7a1         165 G-----RVSLFTSNLSSGGLRVFDS-----------GEGSFSSASISPGMK-V-TAGLETAREARLV-TVDPRDGSVEDL  225 (313)
T ss_dssp             T-----EEEEEEEETTTEEEEEECC-----------SSEEEEEEEECTTSC-E-EEEEEESSCEEEE-EECTTTCCEEEC
T ss_pred             C-----cceEEEEecccCCEEEecC-----------CCCcccceeEccCce-e-eeccCCCCceEEE-EEecccCceeee
Confidence            0     122333333 455555443           345556666666665 3 33221    1123 347765442111


Q ss_pred             ----eEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEE
Q psy17342        351 ----TSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFD  386 (401)
Q Consensus       351 ----~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~  386 (401)
                          .....-....|+-+-+.|++++++.+-.||.=++|.
T Consensus       226 e~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         226 ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             CCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             ecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee
Confidence                000001133466667889998888888888877775

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.63  E-value=0.87  Score=36.81  Aligned_cols=192  Identities=10%  Similarity=0.112  Sum_probs=106.4

Q ss_pred             CCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEE------eccCCCCeEEEEcCC----ceEEEEe
Q psy17342        179 QNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLA------FPQNDVNNFVVGCED----GNVYSAC  248 (401)
Q Consensus       179 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~~l~~~~~d----~~i~~~~  248 (401)
                      |+..+++.....+-|.+||+.  ++.......         ..+..+.      +. .....+++++..    ..|.+|.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~--G~~l~~~~~---------Gr~NNVDvr~~~~l~-~~~~di~vasnR~~~~~~l~~~~  105 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE--GKMLHSYHT---------GKLNNVDIRYDFPLN-GKKVDIAAASNRSEGKNTIEIYA  105 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT--CCEEEECCS---------SCEEEEEEEEEEEET-TEEEEEEEEEECCTTTCEEEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC--CcEEEeccc---------CCcCccccccccccC-CcceEEEEEeCCcCcceeEEEEE
Confidence            455677777788789999986  222222211         2333333      22 222335555532    3577776


Q ss_pred             CCCCCCCceeeecC-------CCCceeeeec--CccCCCCCCCc-EEEEEeCCCeEEEEEeeC---C----CceEEEeec
Q psy17342        249 RHGNKAGNVECYEG-------HEGPVVGLSS--HRAQGHIDFSH-LYLTSSYDWSVKLWNIKE---N----KPVHSFNEF  311 (401)
Q Consensus       249 ~~~~~~~~~~~~~~-------~~~~v~~i~~--~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~---~----~~~~~~~~~  311 (401)
                      +..... .+..+..       -...++.+++  +|..     +. +++....+|.+..|.+..   +    +.++++.. 
T Consensus       106 id~~~~-~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~-----g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-  178 (353)
T d1h6la_         106 IDGKNG-TLQSITDPNRPIASAIDEVYGFSLYHSQKT-----GKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-  178 (353)
T ss_dssp             EETTTT-EEEECSCSSSCEECSSSSCCCEEEEECTTT-----CCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-
T ss_pred             ecCccc-ccccccccccccccccCcceEEEEEecCCC-----CeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-
Confidence            653222 1222221       1224667776  5543     33 556667789999988743   2    34445554 


Q ss_pred             CCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCC-cceEEeec---CCCCeEEEEecC----CCcEEEEEecCCcEE
Q psy17342        312 RDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEV-PATSAIVE---GAPALSRVTWTP----NGTQLCVGDEKGAIT  383 (401)
Q Consensus       312 ~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~---~~~~v~~~~~s~----~g~~l~~~~~dg~v~  383 (401)
                      ...+-.|.+.+... .|..+-++.-|..++....... ..+.....   -...+..++.-.    +|-+|+|.-.+++..
T Consensus       179 ~~q~EGCVvDde~~-~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~  257 (353)
T d1h6la_         179 NSQTEGMAADDEYG-SLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYA  257 (353)
T ss_dssp             SSCEEEEEEETTTT-EEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred             CCccceEEEeCCCC-cEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEE
Confidence            56788999999887 5666667766666665432211 11111111   134566666542    244555666678899


Q ss_pred             EEEeccC
Q psy17342        384 MFDVGEV  390 (401)
Q Consensus       384 iw~~~~~  390 (401)
                      |||..+.
T Consensus       258 vydr~~~  264 (353)
T d1h6la_         258 IYERQGQ  264 (353)
T ss_dssp             EEESSTT
T ss_pred             EEecCCC
Confidence            9999764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.04  E-value=1.8  Score=37.76  Aligned_cols=23  Identities=13%  Similarity=0.319  Sum_probs=20.7

Q ss_pred             CCcEEEEEecCCcEEEEEeccCc
Q psy17342        369 NGTQLCVGDEKGAITMFDVGEVG  391 (401)
Q Consensus       369 ~g~~l~~~~~dg~v~iw~~~~~~  391 (401)
                      .|.+|++|+.||.++.+|.++++
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe  509 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGE  509 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCC
T ss_pred             cCCEEEEECCCCeEEEEECCCCc
Confidence            67788889999999999999995

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.77  E-value=2.1  Score=34.95  Aligned_cols=180  Identities=12%  Similarity=0.082  Sum_probs=95.8

Q ss_pred             EEEEEEeecCCceEEEEEeCCCcEEEeeccCCC------CCccccccccccccCCccceEEEEeccCCCCeEEEEcCCce
Q psy17342        170 VFCMSVIGTQNAHNLISISNDGRLCSWSLEMLS------SPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGN  243 (401)
Q Consensus       170 v~~~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~  243 (401)
                      ..-+++  ++...++++|+.++ +.+..+....      ......+...     .-..|..++|+ .+  .+++. .++.
T Consensus        39 ~~LLAV--sn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~-----~ip~v~~vafs-~d--~l~v~-~~~~  106 (381)
T d1xipa_          39 LQNLDI--SNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-----EIPDVIFVCFH-GD--QVLVS-TRNA  106 (381)
T ss_dssp             CBCEEE--ETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-----ECTTEEEEEEE-TT--EEEEE-ESSE
T ss_pred             cceEEE--eCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc-----CCCCeEEEEee-CC--EEEEE-eCCC
Confidence            445666  66666788777775 5666543210      0011111111     12358888988 43  45544 4456


Q ss_pred             EEEEeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEe-----ecCCceEEE
Q psy17342        244 VYSACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN-----EFRDYVMDV  318 (401)
Q Consensus       244 i~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~v  318 (401)
                      +..++.....  .......-..++.++.++|.        .++....++.+.++++..++......     .-.+.+.++
T Consensus       107 l~~~~~~~l~--~~~~~~~~~~~~~~~~~~p~--------~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v  176 (381)
T d1xipa_         107 LYSLDLEELS--EFRTVTSFEKPVFQLKNVNN--------TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAV  176 (381)
T ss_dssp             EEEEESSSTT--CEEEEEECSSCEEEEEECSS--------EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEE
T ss_pred             EEEEEeeccc--cccccccccccccceecCCc--------eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEE
Confidence            7767665321  22222233566788887764        45556668999999998775432211     113567788


Q ss_pred             EECCCCCcEEEEEecCCEEEEE-eCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEE
Q psy17342        319 QWSPINPALFATVEVAGRVDLW-NLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVG  376 (401)
Q Consensus       319 ~~~~~~~~~l~~~~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  376 (401)
                      +|++.|. .++++. ++...+- ++...   +.+.........+.++.|-.+..++++-
T Consensus       177 ~ws~kgk-q~v~~~-g~~~q~k~~i~~~---~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         177 LLKDRSF-QSFAWR-NGEMEKQFEFSLP---SELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EETTSCE-EEEEEE-TTEEEEEEEECCC---HHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEeCCcE-EEEEeC-CCceeeccCCCCc---cccCCCcCCCcceeEEEEecCceEEEEE
Confidence            8888876 445543 2222221 12111   1111111223467889998777777654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.57  E-value=1.4  Score=34.12  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=14.8

Q ss_pred             CCCcEEEEEecCC-----EEEEEeCCCCC
Q psy17342        323 INPALFATVEVAG-----RVDLWNLNLDT  346 (401)
Q Consensus       323 ~~~~~l~~~~~d~-----~i~iwd~~~~~  346 (401)
                      +++ +++.|+.++     .+.+||+.+.+
T Consensus       242 ~~~-l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         242 QGR-IYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             TTE-EEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCE-EEEEecCCCCeecceEEEEECCCCE
Confidence            454 677776543     47788887654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.99  E-value=4.7  Score=33.73  Aligned_cols=55  Identities=11%  Similarity=0.119  Sum_probs=37.3

Q ss_pred             cceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCceeeec------CCCCceeeeecCcc
Q psy17342        220 LAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVECYE------GHEGPVVGLSSHRA  275 (401)
Q Consensus       220 ~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~------~~~~~v~~i~~~~~  275 (401)
                      ...++|+|. ++++++++--..|.|++++..+.....+..+.      .-++....|+++|+
T Consensus        27 ~~P~~la~~-pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWG-PDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEe-CCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            467899999 78888777656799999987654432222221      12355778999996

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=87.87  E-value=4.6  Score=30.93  Aligned_cols=242  Identities=16%  Similarity=0.161  Sum_probs=116.6

Q ss_pred             cEEEEEeCcCCCCCceEEEecCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCceeeccccccCCCCcEEEEEEe
Q psy17342         97 GVCLIWNTKFKKTTPEFEFFCQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTPVHRTPLSVMAHTHPVFCMSVI  176 (401)
Q Consensus        97 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  176 (401)
                      .+|+.|-.................|..++-   +....+.-. ||.|..|-.+........      ......|..++- 
T Consensus         4 ~sv~~WG~~~~~~~~~~~~~~~~~i~~va~---G~~h~~al~-dG~v~~wG~N~~GQlG~~------~~~~~~v~~v~~-   72 (273)
T d1jtdb_           4 TSVVAWGGNNDWGEATVPAEAQSGVDAIAG---GYFHGLALK-GGKVLGWGANLNGQLTMP------AATQSGVDAIAA-   72 (273)
T ss_dssp             SEEEEESSCCSSSTTCCCGGGSSSEEEEEE---CSSEEEEEE-TTEEEEEECCTTSTTSCC------GGGGSCCCEEEE-
T ss_pred             CEEEEECCCCCCCceeccccCCCCcEEEEc---cCCEEEEEE-CCEEEEEeCCCCCceeee------ecccccceEEec-
Confidence            578888644321111122233567888877   434444434 899999987654432211      112234555553 


Q ss_pred             ecCCceEEEEEeCCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCc
Q psy17342        177 GTQNAHNLISISNDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGN  256 (401)
Q Consensus       177 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~  256 (401)
                        -+...++ - .|+.+..|.............        ....+..++..  ....+  ...|+.++.|.........
T Consensus        73 --G~~~~~a-l-~dg~v~~wG~~~~gq~~~~~~--------~~~~~~~i~~~--~~~~~--~~~dg~v~~~g~~~~~~~~  136 (273)
T d1jtdb_          73 --GNYHSLA-L-KDGEVIAWGGNEDGQTTVPAE--------ARSGVDAIAAG--AWASY--ALKDGKVIAWGDDSDGQTT  136 (273)
T ss_dssp             --CSSEEEE-E-ETTEEEEEECCTTSTTCCCGG--------GGSSCCEEEEE--TTEEE--EEETTEEEEEECCTTSTTS
T ss_pred             --CCCceee-e-eeeeeeccCCCcceeeccccc--------cccceeEEeee--ccccc--ccccccceecccCCCCcee
Confidence              2223333 2 489999998654222111111        11223344433  11222  2247889988654322111


Q ss_pred             eeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEeecCCceEEEEECCCCCcEEEEEecCCE
Q psy17342        257 VECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFNEFRDYVMDVQWSPINPALFATVEVAGR  336 (401)
Q Consensus       257 ~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~l~~~~~d~~  336 (401)
                        ........|..+.-..        ..++ ...++.+..|-................|..|+.....  .++ -. ||.
T Consensus       137 --~~~~~~~~v~~~~~~~--------~~~~-~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~~h--~~~-l~-dG~  201 (273)
T d1jtdb_         137 --VPAEAQSGVTALDGGV--------YTAL-AVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH--SLA-LK-DGK  201 (273)
T ss_dssp             --CCGGGGSSEEEEEECS--------SEEE-EEETTEEEEEECCTTSTTSCCGGGSSSEEEEEECSSE--EEE-EE-TTE
T ss_pred             --eeccCCceEEEEeccc--------eeee-eecccceeEeecccCCcccccccccCCccceecccee--eEE-Ee-cCc
Confidence              1111123344443321        2233 2347888888765432222222234567777665432  233 23 899


Q ss_pred             EEEEeCCCCCCCcceEEeecCCCCeEEEEecCCCcEEEEEecCCcEEEEE
Q psy17342        337 VDLWNLNLDTEVPATSAIVEGAPALSRVTWTPNGTQLCVGDEKGAITMFD  386 (401)
Q Consensus       337 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~iw~  386 (401)
                      |+-|=.....++...   ......|..++-... ..++.  .||.|+.|=
T Consensus       202 v~~WG~n~~Gql~~~---~~~~~~v~~I~~G~~-~~~~l--~~g~v~~WG  245 (273)
T d1jtdb_         202 VIAWGDNRYKQTTVP---TEALSGVSAIASGEW-YSLAL--KNGKVIAWG  245 (273)
T ss_dssp             EEEEECCTTSTTCCC---GGGGSSCCEEEECSS-CEEEE--ETTEEEEES
T ss_pred             EEEcCCCCCCccCCC---ccCCCCcEEEEeCcc-eEEEE--ECCEEEEEC
Confidence            999965543333221   122234666664433 33333  478999994

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=87.68  E-value=5.6  Score=31.72  Aligned_cols=197  Identities=10%  Similarity=0.071  Sum_probs=96.3

Q ss_pred             eeEEEEeCCCCceEEEE-----------ecCCeEEEEECCCCCCCceeeccc--cccCCCCcEEEEEEeecCCce-EEEE
Q psy17342        121 VLSCCFAKFNPYLILGG-----------TYSGQIVLWDTRVQKKTPVHRTPL--SVMAHTHPVFCMSVIGTQNAH-NLIS  186 (401)
Q Consensus       121 v~~~~~~~~~~~~l~~g-----------~~dg~v~iw~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~-~l~s  186 (401)
                      .-.+...|++..++++|           ...|.|.++|+.+.......-...  ......-.-..+......++. +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            34566667653333333           124889999988765432111000  000011123445543344444 3444


Q ss_pred             Ee---CCCcEEEeeccCCCCCccccccccccccCCccceEEEEeccCCCCeEEEEc-----------------CCceEEE
Q psy17342        187 IS---NDGRLCSWSLEMLSSPQETRDLQYNNKQTKNLAVLSLAFPQNDVNNFVVGC-----------------EDGNVYS  246 (401)
Q Consensus       187 ~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------------~d~~i~~  246 (401)
                      ..   ...+|.+|++.......   ................+++. .++..+++-.                 ..+.+..
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l---~~~~~v~~~~~~~pNDv~~~-~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~  192 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSL---LHLKTIRHKLLPSVNDIVAV-GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  192 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEE---EEEEEECCTTCSSEEEEEEE-ETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEE
T ss_pred             EeccCCCceeEEEEEeCCCCeE---EEEeecCCccccCccceEEe-cCCCEEEecCccCcChhhhhhhHhhcCCceeEEE
Confidence            42   34568888876422111   11000011223346677777 5666666521                 1233444


Q ss_pred             EeCCCCCCCceeeecCCCCceeeeecCccCCCCCCCcEEEEEeCCCeEEEEEeeCCCceEEEe--ecCCceEEEEECCCC
Q psy17342        247 ACRHGNKAGNVECYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYDWSVKLWNIKENKPVHSFN--EFRDYVMDVQWSPIN  324 (401)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~v~~~~~~  324 (401)
                      |+..  .   .......-...+.|+++|+.     ..++++-+..++|++|++.....+....  .-.+..-.+.+.+.+
T Consensus       193 ~~~~--~---~~~~~~~l~~pNGI~~s~d~-----~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~  262 (340)
T d1v04a_         193 YSPN--D---VRVVAEGFDFANGINISPDG-----KYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVT  262 (340)
T ss_dssp             ECSS--C---EEEEEEEESSEEEEEECTTS-----SEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTT
T ss_pred             EcCC--c---eEEEcCCCCccceeEECCCC-----CEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCC
Confidence            4432  2   22222223456889999984     3455666668899999997544332221  224556778887644


Q ss_pred             CcEEEEE
Q psy17342        325 PALFATV  331 (401)
Q Consensus       325 ~~~l~~~  331 (401)
                      ..+.+++
T Consensus       263 g~lwva~  269 (340)
T d1v04a_         263 GDLWVGC  269 (340)
T ss_dssp             CCEEEEE
T ss_pred             CEEEEEE
Confidence            3344443

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=86.82  E-value=6.3  Score=32.44  Aligned_cols=146  Identities=6%  Similarity=0.003  Sum_probs=75.7

Q ss_pred             CccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCcee----eecCCCCceeeeecCccCCCCCCCcEEEEEeCC--
Q psy17342        218 KNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVE----CYEGHEGPVVGLSSHRAQGHIDFSHLYLTSSYD--  291 (401)
Q Consensus       218 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~----~~~~~~~~v~~i~~~~~~~~~~~~~~l~s~~~d--  291 (401)
                      ....|.+|+++|.+.+++++++..|-|+.-+-.+..-..+.    ....+...+.+|+++|.+     .+.+..+..+  
T Consensus        10 ~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~n-----p~~vy~~tg~~~   84 (427)
T d2ebsa1          10 GGGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNN-----PDRLYLAQGRYV   84 (427)
T ss_dssp             BCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTE-----EEEEEEEECSCT
T ss_pred             CCCcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCC-----CCEEEEEecccc
Confidence            45679999999888999999888776654332222111110    111233457889999875     4555554422  


Q ss_pred             --CeEEEEEeeC-CCceEEEee---------cCCceEEEEECCCCCcEEEEEecCCEEEEEeCCCCCCCcc----eEEee
Q psy17342        292 --WSVKLWNIKE-NKPVHSFNE---------FRDYVMDVQWSPINPALFATVEVAGRVDLWNLNLDTEVPA----TSAIV  355 (401)
Q Consensus       292 --~~i~iwd~~~-~~~~~~~~~---------~~~~v~~v~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~  355 (401)
                        ....||--.. |+-=..+..         .......+.++|..+..+..++.++-|  |.-..+..-..    .....
T Consensus        85 ~~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl--~~S~D~G~tW~~~~~~~~~~  162 (427)
T d2ebsa1          85 GDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAF  162 (427)
T ss_dssp             TSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCE--EEESSTTSSCEECTTSSCCC
T ss_pred             CCcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccce--eeecCCCceeeecccCcccc
Confidence              1233443322 332222211         112355688999876566666655444  32222221111    00001


Q ss_pred             cCCCCeEEEEecCCC
Q psy17342        356 EGAPALSRVTWTPNG  370 (401)
Q Consensus       356 ~~~~~v~~~~~s~~g  370 (401)
                      .....+..+.++|..
T Consensus       163 ~~~~~~~~i~~~p~~  177 (427)
T d2ebsa1         163 TNGIGYTSVIFDPER  177 (427)
T ss_dssp             CSSSCEEEEEECTTS
T ss_pred             cCCccceEEEecccc
Confidence            123347788998863

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=85.19  E-value=8.7  Score=31.50  Aligned_cols=156  Identities=8%  Similarity=-0.060  Sum_probs=74.7

Q ss_pred             cCCCeeEEEEeCCCCceEEEEecCCeEEEEECCCCCCCc--eeeccccccCCCCcEEEEEEeecCCc-eEEEEEeCC---
Q psy17342        117 CQSPVLSCCFAKFNPYLILGGTYSGQIVLWDTRVQKKTP--VHRTPLSVMAHTHPVFCMSVIGTQNA-HNLISISND---  190 (401)
Q Consensus       117 ~~~~v~~~~~~~~~~~~l~~g~~dg~v~iw~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~d---  190 (401)
                      ..+.|.+|+++|.++++++++...|-|.  .-..+-..-  +.............+.+|++  +|.. +.+..+..+   
T Consensus        10 ~gg~~~~i~~~P~~~~~~ya~~~~gGv~--~S~dgG~tW~~~~~~~~~~~~~~~~~~~iav--dp~np~~vy~~tg~~~~   85 (427)
T d2ebsa1          10 GGGYITGIVAHPKTKDLLYARTDIGGAY--RWDAGTSKWIPLNDFIEAQDMNIMGTESIAL--DPNNPDRLYLAQGRYVG   85 (427)
T ss_dssp             BCSCEEEEEECSSSTTCEEEEESSSCEE--EEETTTTEEEESCTTCCGGGGGGCSEEEEEE--ETTEEEEEEEEECSCTT
T ss_pred             CCCcEEEEEECCCCCCEEEEEecCCCEE--EEECCCCceEECCCCCCCCCcccccEeEEEE--CCCCCCEEEEEeccccC
Confidence            3578999999999989998887766553  322221111  00000011223446888988  5554 344444321   


Q ss_pred             -CcEEEeeccCCCCCccccccccc--cccCCccceEEEEeccCCCCeEEEEcCCceEEEEeCCCCCCCcee---eecCCC
Q psy17342        191 -GRLCSWSLEMLSSPQETRDLQYN--NKQTKNLAVLSLAFPQNDVNNFVVGCEDGNVYSACRHGNKAGNVE---CYEGHE  264 (401)
Q Consensus       191 -g~i~~wd~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~---~~~~~~  264 (401)
                       ....+|.-...++.-........  ...........+.++|.+...+.+++.++-|+.=.-.+.+-..+.   ......
T Consensus        86 ~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~S~D~G~tW~~~~~~~~~~~~~  165 (427)
T d2ebsa1          86 DEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNG  165 (427)
T ss_dssp             SSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEEEESSTTSSCEECTTSSCCCCSS
T ss_pred             CcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccceeeecCCCceeeecccCcccccCC
Confidence             11234433322211111000000  000112345568889777888888887766653221111111111   111123


Q ss_pred             CceeeeecCccC
Q psy17342        265 GPVVGLSSHRAQ  276 (401)
Q Consensus       265 ~~v~~i~~~~~~  276 (401)
                      ..+..+.++|..
T Consensus       166 ~~~~~i~~~p~~  177 (427)
T d2ebsa1         166 IGYTSVIFDPER  177 (427)
T ss_dssp             SCEEEEEECTTS
T ss_pred             ccceEEEecccc
Confidence            346788888875