Psyllid ID: psy17370

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MSTKSNPRALFSSTPVKKNEGPIATLSSSNQSKPKEKFVKPATPKTPLATANYERCIQARRAMSADRSPATPKIKLPRANLIMRSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSHSGWTGWVSCVVVIAVDFGCGSWRFESKPSHEIYLSVSVLTDITKFIEVY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHcccccccccEEEEEccccccHHHccccccEEEcccccEEEEccccccEEEEccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEccccccccEEccccccccccHHHHHHHHHHHccccccEEEEEEEEEEEEEEEcccccccccccccccccccEEccccccEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHccccEEEEEccccEEEEcccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHccccEEEEEEcccccccEEEccccccccccHHHHHHHHHHHHHHccccEEEEEEEEEEEEcHHHHHHccccccccccccccEccccccEEEEc
Coil and Loop (DISEMBL)
mstksnpralfsstpvkknegpiatlsssnqskpkekfvkpatpktplatanYERCIQARRAmsadrspatpkiklpranlimrsssencvadnlecsrmTVAVRIRPLLVKELhmdvssieispdrremkvndnaksytfkldhclgqdtdqtsVFTIIAQPLLDAAFNGYNVCLfaygqtgsgksyrgdstlnssvlrprvlfypgfswshsgwtgWVSCVVVIAVDFgcgswrfeskpsheiyLSVSVLTDITKFIEVY
Flexible Loop (DISEMBL)
mstksnpralfsstpvkknegpiatlsssnqskpkekfvkpatpktplataNYERCIQARramsadrspatpkiklpranlimrsSSENCVADNLECSRMTVAVRIRPllvkelhmdvssieispdrremkvNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSHSGWTGWVSCVVVIAVDFGCGSWRFeskpsheiylsvsvltditKFIEVY
Low Complexity Region (SEG)
MSTKSNPRALFSSTPVKKNEGPIATLSSSNQSKPKEKFVKPATPKTPLATANYERCIQARRAMSADRSPATPKIKLPRANLIMRSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSHSGWTGWVSCVVVIAVDFGCGSWRFESKPSHEIYLSVSVLTDITKFIEVY
Disordered region (IsUnstruct)
****************************************************************************************NCVADNLECSRMTVAVRIRPLLVKELHMDVSSIE*************AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSHSGWTGWVSCVVVIAVDFGCGSWRFESKPSHEIYLSVSVLTDITKFIE**
Disordered Region (DISOPRED)
***************************************************************************************************MTVAVRIRPLLVKEL************************YTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSHSGWTGWVSCVVVIAVDFGCGSWRF******************TKFIEVY
Disordered Region (DISEMBL)
MSTKSNPRALFSSTPVKKNEGPIAT****************ATPKTPLATANYERCIQARR********ATPKIKLPRANLIMRSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSHSGWTGWVSCVVVIAVDFGCGSWRFESKPSHEIYLSVSVLTDITKFIEVY
Disordered Region (DISPRO)
*************************************************************************************************SRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSHSGWTGWVSCVVVIAVDFGCGSWRFESKPSHEIYLSVSVLTDITKFIEVY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTKSNPRALFSSTPVKKNEGPIATLSSSNQSKPKEKFVKPATPKTPLATANYERCIQARRAMSADRSPATPKIKLPRANLIMRSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSHSGWTGWVSCVVVIAVDFGCGSWRFESKPSHEIYLSVSVLTDITKFIEVY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
Q15058	1648	Kinesin-like protein KIF1	yes	N/A	0.427	0.067	0.377	7e-14
B7ZNG0	1348	Kinesin-like protein KIF7	no	N/A	0.351	0.068	0.432	1e-13
Q5VQ09	891	Armadillo repeat-containi	yes	N/A	0.347	0.102	0.357	6e-12
Q58G59	1363	Kinesin-like protein kif7	yes	N/A	0.377	0.072	0.394	7e-12
Q9NQT8	1826	Kinesin-like protein KIF1	no	N/A	0.389	0.055	0.362	1e-11
Q2M1P5	1343	Kinesin-like protein KIF7	no	N/A	0.351	0.068	0.402	2e-11
Q86VH2	1401	Kinesin-like protein KIF2	no	N/A	0.328	0.061	0.388	3e-11
Q9FZ06	919	Armadillo repeat-containi	yes	N/A	0.343	0.097	0.361	4e-11
Q9LPC6	894	Armadillo repeat-containi	no	N/A	0.400	0.117	0.345	4e-11
Q7M6Z4	1394	Kinesin-like protein KIF2	no	N/A	0.328	0.061	0.388	2e-10

>sp|Q15058|KIF14_HUMAN Kinesin-like protein KIF14 OS=Homo sapiens GN=KIF14 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 10/122 (8%)

Query: 76  LPRANLIMRSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVN-- 133
           LP    +++++S       +E S++TVAVR+RP   +E  ++ +S  +    +E+ V   
Sbjct: 335 LPEEETVVQNTSAGKDPLKVENSQVTVAVRVRPFTKRE-KIEKASQVVFMSGKEITVEHP 393

Query: 134 DNAKSYTF-------KLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGK 186
           D  + Y F         D C      QT+V+  +A PLL+ AF G+N CLFAYGQTGSGK
Sbjct: 394 DTKQVYNFIYDVSFWSFDECHPHYASQTTVYEKLAAPLLERAFEGFNTCLFAYGQTGSGK 453

Query: 187 SY 188
           SY
Sbjct: 454 SY 455

Plays an essential role in cytokinesis.
Homo sapiens (taxid: 9606)

>sp|B7ZNG0|KIF7_MOUSE Kinesin-like protein KIF7 OS=Mus musculus GN=Kif7 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 5/97 (5%)

Query: 102 VAVRIRPLLVKEL-HMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTII 160
           VA+R+RPLL KEL H   S + + P+R  + +    +   F     LG+DT Q +V+   
Sbjct: 18  VALRVRPLLPKELLHGHQSCLRVEPERGRITL---GRDRHFGFHVVLGEDTGQEAVYQAC 74

Query: 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSYR-GDSTLNS 196
            QPLL+A F G+N  +FAYGQTGSGK+Y  G++++ S
Sbjct: 75  VQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVAS 111

Acts as both a negative and positive regulator of sonic hedgehog (Shh) pathway, acting downstream of SMO. Negatively regulates the pathway by preventing inappropriate activation of the transcriptional activator GLI2 in the absence of ligand. Positively regulates the pathway by preventing the processing of the transcription factor GLI3 into its repressor form. Required for efficient localization of GLI3 to cilia in response to Shh. Affects microtubular dynamics and acts as a ciliary motor.

Mus musculus (taxid: 10090)

>sp|Q5VQ09|ARK2_ORYSJ Armadillo repeat-containing kinesin-like protein 2 OS=Oryza sativa subsp. japonica GN=Os06g0137100 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 58/95 (61%), Gaps = 4/95 (4%)

Query: 98  SRMTVAVRIRPLLVKELHMDVS---SIEISPDRREMKVNDNA-KSYTFKLDHCLGQDTDQ 153
           SR+ VAVR+RP    EL  D      +E+ P+ + +K+  N  +S T++ D  L +   Q
Sbjct: 53  SRVRVAVRLRPRNADELAADADFGDCVELQPELKRLKLRKNNWESETYEFDEVLTEFASQ 112

Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             V+ ++A+P++++   GYN  + AYGQTG+GK++
Sbjct: 113 KRVYEVVAKPVVESVLEGYNGTVMAYGQTGTGKTF 147

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q58G59|KIF7_DANRE Kinesin-like protein kif7 OS=Danio rerio GN=kif7 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 5/104 (4%)

Query: 95  LECSRMTVAVRIRPLLVKE-LHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
           +E S + VAVR+RPLL KE LH   S I   P+ R + + ++     F  D      + Q
Sbjct: 11  VEESAVQVAVRVRPLLPKEILHSHESCITSDPEERRVTLGNDRH---FHCDFVFEDGSTQ 67

Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYR-GDSTLNS 196
             V+T   QPL++A F+G+N  + AYGQTGSGK+Y  G++++++
Sbjct: 68  EEVYTNCVQPLIEAFFHGFNATVSAYGQTGSGKTYTIGEASISA 111

Acts as an intracellular repressor of hedgehog signaling pathway and this negative regulatory effect is enhanced in conjunction with the suppressor of fused protein. Affects microtubular dynamics and acts as a ciliary motor.

Danio rerio (taxid: 7955)

>sp|Q9NQT8|KI13B_HUMAN Kinesin-like protein KIF13B OS=Homo sapiens GN=KIF13B PE=1 SV=1

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 64/127 (50%), Gaps = 25/127 (19%)

Query: 98  SRMTVAVRIRPLLVKE--LH------MDVSSIEISPDRREMKVND-NAKSYTFKLDHCL- 147
           S++ VAVRIRP+  +E  LH      +D + + ++P    +   D   +   F  DHC  
Sbjct: 4   SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKCFAYDHCFW 63

Query: 148 -----------GQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNS 196
                      GQD     VF  + + +L  AF+GYN C+FAYGQTGSGKSY    T + 
Sbjct: 64  SMDESVKEKYAGQDI----VFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQ 119

Query: 197 SVLRPRV 203
             L PR+
Sbjct: 120 PGLIPRL 126

Involved in reorganization of the cortical cytoskeleton. Regulates axon formation by promoting the formation of extra axons. May be functionally important for the intracellular trafficking of MAGUKs and associated protein complexes.

Homo sapiens (taxid: 9606)

>sp|Q2M1P5|KIF7_HUMAN Kinesin-like protein KIF7 OS=Homo sapiens GN=KIF7 PE=1 SV=2

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)

Query: 102 VAVRIRPLLVKEL-HMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTII 160
           VA+R+RPLL KEL H   S +++ P    + +    +   F     L +D  Q +V+   
Sbjct: 18  VALRVRPLLPKELLHGHQSCLQVEPGLGRVTL---GRDRHFGFHVVLAEDAGQEAVYQAC 74

Query: 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSYR-GDSTLNS 196
            QPLL+A F G+N  +FAYGQTGSGK+Y  G++++ S
Sbjct: 75  VQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVAS 111

Acts as both a negative and positive regulator of sonic hedgehog (Shh) pathway, acting downstream of SMO. Negatively regulates the pathway by preventing inappropriate activation of the transcriptional activator GLI2 in the absence of ligand. Positively regulates the pathway by preventing the processing of the transcription factor GLI3 into its repressor form. Required for efficient localization of GLI3 to cilia in response to Shh. Affects microtubular dynamics and acts as a ciliary motor.

Homo sapiens (taxid: 9606)

>sp|Q86VH2|KIF27_HUMAN Kinesin-like protein KIF27 OS=Homo sapiens GN=KIF27 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 4/90 (4%)

Query: 100 MTVAVRIRPLLVKE-LHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFT 158
           + VAVRIRPLL KE LH     + + P+ +++ +    +   F  D   G+++ Q  V+ 
Sbjct: 6   VKVAVRIRPLLCKEALHNHQVCVRVIPNSQQVII---GRDRVFTFDFVFGKNSTQDEVYN 62

Query: 159 IIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
              +PL+ +   GYN  +FAYGQTGSGK+Y
Sbjct: 63  TCIKPLVLSLIEGYNATVFAYGQTGSGKTY 92

Plays an essential role in motile ciliogenesis.

Homo sapiens (taxid: 9606)

>sp|Q9FZ06|ARK3_ARATH Armadillo repeat-containing kinesin-like protein 3 OS=Arabidopsis thaliana GN=ARK3 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 58/94 (61%), Gaps = 4/94 (4%)

Query: 99  RMTVAVRIRPLLVKELHMDVS---SIEISPDRREMKV-NDNAKSYTFKLDHCLGQDTDQT 154
           R+ VAVR+RP   +EL  D      +E+ P+ + +K+  +N  + TF+ D  L +   Q 
Sbjct: 70  RVRVAVRLRPRNGEELIADADFADCVELQPELKRLKLRKNNWDTDTFEFDEVLTEYASQK 129

Query: 155 SVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
            V+ ++A+P+++   +GYN  + AYGQTG+GK+Y
Sbjct: 130 RVYEVVAKPVVEGVLDGYNGTIMAYGQTGTGKTY 163

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPC6|ARK2_ARATH Armadillo repeat-containing kinesin-like protein 2 OS=Arabidopsis thaliana GN=ARK2 PE=1 SV=2

 Score = 68.6 bits (166), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 63/110 (57%), Gaps = 5/110 (4%)

Query: 84  RSSSENC-VADNLECSRMTVAVRIRPLLVKELHMDVS---SIEISPDRREMKVNDNA-KS 138
           RSSS +   ADN    R+ VAVR+RP    E   D      +E+ P+ + +K+  N   +
Sbjct: 44  RSSSASIGAADNGVPGRVRVAVRLRPRNADESVADADFADCVELQPELKRLKLRKNNWDT 103

Query: 139 YTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
            T++ D  L +   Q  V+ ++A+P++++   GYN  + AYGQTG+GK++
Sbjct: 104 ETYEFDEVLTEAASQKRVYEVVAKPVVESVLEGYNGTVMAYGQTGTGKTF 153

Involved in the control of epidermal-cell morphogenesis in roots and helical growth of roots by promoting microtubule depolymerization and limiting the accumulation of endoplasmic microtubules. Seems to be involved in the control of cell-file rotation (or twisting).

Arabidopsis thaliana (taxid: 3702)

>sp|Q7M6Z4|KIF27_MOUSE Kinesin-like protein KIF27 OS=Mus musculus GN=Kif27 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 4/90 (4%)

Query: 100 MTVAVRIRPLLVKE-LHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFT 158
           + VAVRIRPLL KE LH     +   P+ +++ +    +   F  D   G+++ Q  V+ 
Sbjct: 6   IKVAVRIRPLLCKEVLHNHQVCVRDIPNTQQIII---GRDRVFTFDFVFGKNSTQDEVYN 62

Query: 159 IIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
              +PL+ +   GYN  +FAYGQTGSGK+Y
Sbjct: 63  TCIKPLVLSLIEGYNATVFAYGQTGSGKTY 92

Plays an essential role in motile ciliogenesis.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
189237405	619	PREDICTED: similar to kinesin-like prote	0.541	0.229	0.371	5e-15
270008161	704	nebbish [Tribolium castaneum]	0.541	0.201	0.371	5e-15
383862963	1199	PREDICTED: kinesin-like protein KIF14-li	0.679	0.148	0.315	1e-13
322798327	525	hypothetical protein SINV_08845 [Solenop	0.354	0.177	0.445	4e-13
170043367	533	kinesin-II 85 kDa subunit [Culex quinque	0.351	0.172	0.439	4e-13
149058501	639	kinesin family member 14 (predicted) [Ra	0.435	0.178	0.366	5e-13
332024101	529	Kinesin-like protein KIF14 [Acromyrmex e	0.354	0.175	0.435	6e-13
157125836	1151	kinesin-like protein KIF1B [Aedes aegypt	0.354	0.080	0.405	7e-13
189233731	619	PREDICTED: similar to AGAP002427-PA [Tri	0.484	0.205	0.337	1e-12
291402681	1633	PREDICTED: kinesin family member 14 [Ory	0.408	0.065	0.408	1e-12

>gi|189237405|ref|XP_973631.2| PREDICTED: similar to kinesin-like protein KIF1B [Tribolium castaneum]

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 87/167 (52%), Gaps = 25/167 (14%)

Query: 36  EKFVKPATPKTPLATANYERCIQARRAMSADRSPATPKIKLPRANLIMRSSSENCVADNL 95
           E FV P TP+  LAT       ++ RA +     +T  ++ P + L  RSS E       
Sbjct: 32  EGFVAPTTPRN-LATP------KSNRAANTPECFSTVTLETPNSALKRRSSKEKFD---- 80

Query: 96  ECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDN-------AKSYTFKLDH--- 145
             S +TVAVRIRP+  +EL    ++  +    +E+ +  N       +  + F+ DH   
Sbjct: 81  RVSNLTVAVRIRPMNSRELACVGAANVVKVRNQELVIRSNPLGNSAMSLDHVFQYDHIFW 140

Query: 146 -CLGQDT---DQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
            C   D+    Q  VFT + QPLL++AF GYN CLFAYGQTGSGKS+
Sbjct: 141 SCDESDSLYSSQEDVFTTVGQPLLNSAFRGYNACLFAYGQTGSGKSF 187

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008161|gb|EFA04609.1| nebbish [Tribolium castaneum]

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 87/167 (52%), Gaps = 25/167 (14%)

Query: 36  EKFVKPATPKTPLATANYERCIQARRAMSADRSPATPKIKLPRANLIMRSSSENCVADNL 95
           E FV P TP+  LAT       ++ RA +     +T  ++ P + L  RSS E       
Sbjct: 32  EGFVAPTTPRN-LATP------KSNRAANTPECFSTVTLETPNSALKRRSSKEKFD---- 80

Query: 96  ECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDN-------AKSYTFKLDH--- 145
             S +TVAVRIRP+  +EL    ++  +    +E+ +  N       +  + F+ DH   
Sbjct: 81  RVSNLTVAVRIRPMNSRELACVGAANVVKVRNQELVIRSNPLGNSAMSLDHVFQYDHIFW 140

Query: 146 -CLGQDT---DQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
            C   D+    Q  VFT + QPLL++AF GYN CLFAYGQTGSGKS+
Sbjct: 141 SCDESDSLYSSQEDVFTTVGQPLLNSAFRGYNACLFAYGQTGSGKSF 187

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862963|ref|XP_003706952.1| PREDICTED: kinesin-like protein KIF14-like [Megachile rotundata]

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 100/222 (45%), Gaps = 44/222 (19%)

Query: 1   MSTKSNPRALFSSTPVK----KNEGPIATLSSSNQSKPKEKFVKPATPKTPLATANYERC 56
           M+     + LFS   V     K    +A+ SS N   P   F  P   KT  AT+N +  
Sbjct: 93  MNVLRRKQVLFSEEAVSDVKCKTSTKVASNSSLNDKTPNMHFCTPKQYKTRTATSNTKIN 152

Query: 57  IQARRAMSADRSP------------ATP------KIKLPRANLIMRSSSENCVADNL--- 95
           I     +  +R+P            ATP      ++++P +      S+E  V D     
Sbjct: 153 I-----LPPNRTPVKRYFNDNISTEATPDCFSVVQVEIPYS-----KSNEFGVEDQTVYE 202

Query: 96  -ECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQT 154
            E S +TV +R+RPL  KEL+    +  +  + + + V   +  ++F  DHC     D T
Sbjct: 203 EENSNLTVGIRVRPLNAKELNDSKVTSVVQVNDQNVIVTCESIQHSFMYDHCFVSYADST 262

Query: 155 S--------VFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
                    +F  +  PL+  AF GYNVCLFAYGQTGSGKSY
Sbjct: 263 KSGHASQEIIFRTMVLPLVQNAFEGYNVCLFAYGQTGSGKSY 304

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322798327|gb|EFZ20067.1| hypothetical protein SINV_08845 [Solenopsis invicta]

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 55/101 (54%), Gaps = 8/101 (7%)

Query: 96  ECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTD--- 152
           E S +TV +RIRPL  KEL+    +  I    + + V   +  +TF  DHC     D   
Sbjct: 209 ESSNLTVGIRIRPLNAKELNDPKITTVIQGSGQSVNVECESAHHTFMYDHCFVSYDDPLT 268

Query: 153 -----QTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
                Q  VF  +  PL+  AF GYNVCLFAYGQTGSGKSY
Sbjct: 269 PGHASQEVVFRNMVLPLVQNAFEGYNVCLFAYGQTGSGKSY 309

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043367|ref|XP_001849362.1| kinesin-II 85 kDa subunit [Culex quinquefasciatus] gi|167866727|gb|EDS30110.1| kinesin-II 85 kDa subunit [Culex quinquefasciatus]

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 59/107 (55%), Gaps = 15/107 (14%)

Query: 96  ECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVN-DNAKSYTFKLDHCLGQD---- 150
           E S + VAVRIRPL  KE    V+++ +     E+ VN  N    T  ++HC   D    
Sbjct: 164 EISNLKVAVRIRPLSAKECVESVANV-VKVKENEVIVNAGNTADNTAGVEHCFQYDHAFW 222

Query: 151 ---------TDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
                     DQ +V+  + +PLLD AF GYN CLFAYGQTGSGKSY
Sbjct: 223 SCNAEHPSYVDQPTVYRGLMKPLLDKAFEGYNACLFAYGQTGSGKSY 269

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149058501|gb|EDM09658.1| kinesin family member 14 (predicted) [Rattus norvegicus]

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 78/150 (52%), Gaps = 36/150 (24%)

Query: 70  ATPKIK-LPRANLIMRSSSENCV---------------ADNL--ECSRMTVAVRIRPLLV 111
           A+P++K  P+++L+   SS+                   D+L  E S++TVAVR+RP   
Sbjct: 346 ASPRVKPRPKSSLLANKSSQESTLPPEEKSTVQNTFTEPDSLKVENSQVTVAVRVRPFSK 405

Query: 112 KELHMDVSSI------EISPDRREMKVNDNAKSYTF-------KLDHCLGQDTDQTSVFT 158
           +E     S +      EI+ +  +MK     + Y+F         D C     +QT+V+ 
Sbjct: 406 REKTEKASQVVFRNGEEITVEHPDMK-----QIYSFIYDVAFWSFDECHPGYANQTTVYE 460

Query: 159 IIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
            +A PLLD AF GYN CLFAYGQTGSGKSY
Sbjct: 461 TLAAPLLDRAFEGYNTCLFAYGQTGSGKSY 490

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332024101|gb|EGI64317.1| Kinesin-like protein KIF14 [Acromyrmex echinatior]

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 56/101 (55%), Gaps = 8/101 (7%)

Query: 96  ECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTD--- 152
           E S +TV +RIRPL  KEL+    +  +  + + + V   +  +TF  DHC     D   
Sbjct: 205 ESSNLTVGIRIRPLNSKELNDPKVTTIVEGNGQNVVVECESAHHTFMYDHCFVSYNDPLT 264

Query: 153 -----QTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
                Q  VF  +  PL+  AF GYNVCLFAYGQTGSGKSY
Sbjct: 265 PGHANQEVVFRNMVLPLVQNAFEGYNVCLFAYGQTGSGKSY 305

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125836|ref|XP_001660806.1| kinesin-like protein KIF1B [Aedes aegypti] gi|108882659|gb|EAT46884.1| AAEL001986-PA [Aedes aegypti]

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 56/106 (52%), Gaps = 13/106 (12%)

Query: 96  ECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQD----- 150
           E S + VAVR+RPL  KE    V++I    +   +    N    +  ++HC   D     
Sbjct: 167 EISNLKVAVRVRPLSAKECIDSVANIVRVRENEVVVNAGNTADNSAGVEHCFQYDHAFWS 226

Query: 151 --------TDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
                    DQT V+  + +PL+D AF GYN CLFAYGQTGSGKSY
Sbjct: 227 CNAEDRSYVDQTGVYNRLMKPLIDKAFEGYNACLFAYGQTGSGKSY 272

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189233731|ref|XP_971025.2| PREDICTED: similar to AGAP002427-PA [Tribolium castaneum] gi|270015046|gb|EFA11494.1| hypothetical protein TcasGA2_TC014207 [Tribolium castaneum]

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 18/145 (12%)

Query: 96  ECSRMTVAVRIRPLLVKEL---HMDVSSIEISPDRREMKVN-DNAKSYTFKLDHCLGQDT 151
           E   + V VR+RPL  KE    H++V  + I P    + +N D A    FK D   G+D+
Sbjct: 11  EVENVRVFVRVRPLTKKEEAEGHLNV--LLIDPKENLIALNKDGANPKPFKFDQVFGEDS 68

Query: 152 DQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSW 211
            Q S++ +IA P+++ A  GYN  +FAYGQTG+GK+Y    T++ +  +P +      ++
Sbjct: 69  TQLSLYRVIAVPIVEKALQGYNGTIFAYGQTGTGKTY----TMSGNYAKPELKGIIPNTF 124

Query: 212 SH--------SGWTGWVSCVVVIAV 228
           SH        SG T +V  V  + +
Sbjct: 125 SHIFSQISRASGETSFVVTVTYLEI 149

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291402681|ref|XP_002717707.1| PREDICTED: kinesin family member 14 [Oryctolagus cuniculus]

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 69/120 (57%), Gaps = 13/120 (10%)

Query: 78  RANLIMRSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVN--DN 135
           RA L     ++ C  +N   S++TVAVR+RP   +E  ++ +S  +  +  E+ V   D 
Sbjct: 323 RAILNASVEADTCKVEN---SQVTVAVRVRPFSKRE-KIEKASQVVFMNGEEIIVEYPDM 378

Query: 136 AKSYTF-------KLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
            ++YTF         D C  +   QT+V+  +A PLL+ AF GYN CLFAYGQTGSGKSY
Sbjct: 379 KQTYTFTYSVSFWSFDECHPRYASQTAVYETLAAPLLERAFEGYNTCLFAYGQTGSGKSY 438

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
MGI|MGI:1098239	1348	Kif7 "kinesin family member 7"	0.351	0.068	0.432	7.1e-13
UNIPROTKB|F8WD21	147	KIF7 "Kinesin-like protein KIF	0.343	0.612	0.4	9.1e-13
RGD|1310650	639	Kif14 "kinesin family member 1	0.358	0.147	0.441	1.5e-12
UNIPROTKB|Q15058	1648	KIF14 "Kinesin-like protein KI	0.587	0.093	0.341	2.6e-12
RGD|1310310	1341	Kif7 "kinesin family member 7"	0.351	0.068	0.422	2.9e-12
UNIPROTKB|F2Z355	171	KIF27 "Kinesin-like protein KI	0.320	0.491	0.409	4.8e-12
UNIPROTKB|J9PAQ6	540	KIF14 "Uncharacterized protein	0.358	0.174	0.431	6.9e-12
UNIPROTKB|J9NT06	596	KIF7 "Uncharacterized protein"	0.351	0.154	0.412	1.6e-11
UNIPROTKB|E2R054	1646	KIF14 "Uncharacterized protein	0.358	0.057	0.431	3.3e-11
UNIPROTKB|F1PD49	1355	KIF7 "Uncharacterized protein"	0.351	0.067	0.412	5e-11

MGI|MGI:1098239 Kif7 "kinesin family member 7" [Mus musculus (taxid:10090)]

 Score = 190 (71.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 42/97 (43%), Positives = 64/97 (65%)

Query:   102 VAVRIRPLLVKEL-HMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTII 160
             VA+R+RPLL KEL H   S + + P+R  + +  + + + F +   LG+DT Q +V+   
Sbjct:    18 VALRVRPLLPKELLHGHQSCLRVEPERGRITLGRD-RHFGFHV--VLGEDTGQEAVYQAC 74

Query:   161 AQPLLDAAFNGYNVCLFAYGQTGSGKSYR-GDSTLNS 196
              QPLL+A F G+N  +FAYGQTGSGK+Y  G++++ S
Sbjct:    75 VQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVAS 111

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005929 "cilium" evidence=ISO;IDA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0045879 "negative regulation of smoothened signaling pathway" evidence=IMP

GO:0045880 "positive regulation of smoothened signaling pathway" evidence=IMP

UNIPROTKB|F8WD21 KIF7 "Kinesin-like protein KIF7" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 38/95 (40%), Positives = 60/95 (63%)

Query:   102 VAVRIRPLLVKEL-HMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTII 160
             VA+R+RPLL KEL H   S +++ P    + +  + + + F +   L +D  Q +V+   
Sbjct:    18 VALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRD-RHFGFHV--VLAEDAGQEAVYQAC 74

Query:   161 AQPLLDAAFNGYNVCLFAYGQTGSGKSYR-GDSTL 194
              QPLL+A F G+N  +FAYGQTGSGK+Y  G++++
Sbjct:    75 VQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASV 109

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

RGD|1310650 Kif14 "kinesin family member 14" [Rattus norvegicus (taxid:10116)]

 Score = 186 (70.5 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 45/102 (44%), Positives = 59/102 (57%)

Query:    95 LECSRMTVAVRIRPLLVKELHMDVSSI------EISPDRREMK-VNDNAKSYTF-KLDHC 146
             +E S++TVAVR+RP   +E     S +      EI+ +  +MK +        F   D C
Sbjct:   389 VENSQVTVAVRVRPFSKREKTEKASQVVFRNGEEITVEHPDMKQIYSFIYDVAFWSFDEC 448

Query:   147 LGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
                  +QT+V+  +A PLLD AF GYN CLFAYGQTGSGKSY
Sbjct:   449 HPGYANQTTVYETLAAPLLDRAFEGYNTCLFAYGQTGSGKSY 490

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

UNIPROTKB|Q15058 KIF14 "Kinesin-like protein KIF14" [Homo sapiens (taxid:9606)]

 Score = 188 (71.2 bits), Expect = 2.6e-12, P = 2.6e-12
 Identities = 57/167 (34%), Positives = 86/167 (51%)

Query:    32 SKPKEKFVKPATPKTPLATANY-ERCIQARRAMSADRSPATPKIKLPRANLIMRSSSENC 90
             S P+ K   P+  K  ++     +R   +  A   +RS A   I LP    +++++S   
Sbjct:   292 SLPQLKSPAPSILKNRMSNLQVKQRPKSSFLANKQERS-AENTI-LPEEETVVQNTSAGK 349

Query:    91 VADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVN--DNAKSYTF------- 141
                 +E S++TVAVR+RP   +E  ++ +S  +    +E+ V   D  + Y F       
Sbjct:   350 DPLKVENSQVTVAVRVRPFTKRE-KIEKASQVVFMSGKEITVEHPDTKQVYNFIYDVSFW 408

Query:   142 KLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
               D C      QT+V+  +A PLL+ AF G+N CLFAYGQTGSGKSY
Sbjct:   409 SFDECHPHYASQTTVYEKLAAPLLERAFEGFNTCLFAYGQTGSGKSY 455

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

RGD|1310310 Kif7 "kinesin family member 7" [Rattus norvegicus (taxid:10116)]

 Score = 187 (70.9 bits), Expect = 2.9e-12, P = 2.9e-12
 Identities = 41/97 (42%), Positives = 64/97 (65%)

Query:   102 VAVRIRPLLVKEL-HMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTII 160
             VA+R+RPLL KEL H   S +++ P+R  + +  + + + F +   LG+D  Q +V+   
Sbjct:    18 VALRVRPLLPKELLHGHQSCLQVEPERGRITLGRD-RHFGFHV--VLGEDAGQEAVYQAC 74

Query:   161 AQPLLDAAFNGYNVCLFAYGQTGSGKSYR-GDSTLNS 196
              QPLL+A F G+N  +FAYGQTGSGK+Y  G++++ S
Sbjct:    75 VQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVAS 111

GO:0003777 "microtubule motor activity" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005929 "cilium" evidence=IEA;ISO

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0045879 "negative regulation of smoothened signaling pathway" evidence=ISO

GO:0045880 "positive regulation of smoothened signaling pathway" evidence=ISO

UNIPROTKB|F2Z355 KIF27 "Kinesin-like protein KIF27" [Homo sapiens (taxid:9606)]

 Score = 163 (62.4 bits), Expect = 4.8e-12, P = 4.8e-12
 Identities = 36/88 (40%), Positives = 55/88 (62%)

Query:   102 VAVRIRPLLVKE-LHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTII 160
             VAVRIRPLL KE LH     + + P+ +++ +  + + +TF  D   G+++ Q  V+   
Sbjct:     8 VAVRIRPLLCKEALHNHQVCVRVIPNSQQVIIGRD-RVFTF--DFVFGKNSTQDEVYNTC 64

Query:   161 AQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
              +PL+ +   GYN  +FAYGQTGSGK+Y
Sbjct:    65 IKPLVLSLIEGYNATVFAYGQTGSGKTY 92

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|J9PAQ6 KIF14 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 181 (68.8 bits), Expect = 6.9e-12, P = 6.9e-12
 Identities = 44/102 (43%), Positives = 60/102 (58%)

Query:    95 LECSRMTVAVRIRPLLVKELHMDVSSI------EISPDRREMK-VNDNAKSYTF-KLDHC 146
             +E S++TVAVR+RP   +E+      +      EI+ +  +MK V +   +  F   D C
Sbjct:   366 VENSQVTVAVRVRPFSKREMVEKACQVVFMNGEEITVEHPDMKQVYNFIYNIGFWSFDEC 425

Query:   147 LGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
                   QT+V+  +A PLL+ AF GYN CLFAYGQTGSGKSY
Sbjct:   426 HPNYASQTTVYETLAVPLLERAFEGYNTCLFAYGQTGSGKSY 467

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|J9NT06 KIF7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 179 (68.1 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 40/97 (41%), Positives = 62/97 (63%)

Query:   102 VAVRIRPLLVKEL-HMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTII 160
             VA+R+RPLL KEL H   S + + P+   + +  + + + F +   L +DT Q +V+   
Sbjct:    60 VALRVRPLLPKELLHGHQSCLRVEPEHSRITLGRD-RHFGFHV--VLDEDTGQEAVYQAC 116

Query:   161 AQPLLDAAFNGYNVCLFAYGQTGSGKSYR-GDSTLNS 196
              QPLL+A F G+N  +FAYGQTGSGK+Y  G++++ S
Sbjct:   117 VQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVAS 153

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|E2R054 KIF14 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 181 (68.8 bits), Expect = 3.3e-11, P = 3.3e-11
 Identities = 44/102 (43%), Positives = 60/102 (58%)

Query:    95 LECSRMTVAVRIRPLLVKELHMDVSSI------EISPDRREMK-VNDNAKSYTF-KLDHC 146
             +E S++TVAVR+RP   +E+      +      EI+ +  +MK V +   +  F   D C
Sbjct:   352 VENSQVTVAVRVRPFSKREMVEKACQVVFMNGEEITVEHPDMKQVYNFIYNIGFWSFDEC 411

Query:   147 LGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
                   QT+V+  +A PLL+ AF GYN CLFAYGQTGSGKSY
Sbjct:   412 HPNYASQTTVYETLAVPLLERAFEGYNTCLFAYGQTGSGKSY 453

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1PD49 KIF7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 179 (68.1 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 40/97 (41%), Positives = 62/97 (63%)

Query:   102 VAVRIRPLLVKEL-HMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTII 160
             VA+R+RPLL KEL H   S + + P+   + +  + + + F +   L +DT Q +V+   
Sbjct:    18 VALRVRPLLPKELLHGHQSCLRVEPEHSRITLGRD-RHFGFHV--VLDEDTGQEAVYQAC 74

Query:   161 AQPLLDAAFNGYNVCLFAYGQTGSGKSYR-GDSTLNS 196
              QPLL+A F G+N  +FAYGQTGSGK+Y  G++++ S
Sbjct:    75 VQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVAS 111

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	262
smart00129	335	smart00129, KISc, Kinesin motor, catalytic domain	2e-24
pfam00225	326	pfam00225, Kinesin, Kinesin motor domain	3e-22
cd00106	328	cd00106, KISc, Kinesin motor domain	4e-22
cd01372	341	cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik	6e-22
cd01365	356	cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K	1e-21
cd01366	329	cd01366, KISc_C_terminal, Kinesin motor domain, KI	6e-21
cd01364	352	cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC	9e-18
cd01375	334	cd01375, KISc_KIF9_like, Kinesin motor domain, KIF	2e-16
cd01370	338	cd01370, KISc_KIP3_like, Kinesin motor domain, KIP	1e-15
cd01369	325	cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine	4e-15
cd01371	333	cd01371, KISc_KIF3, Kinesin motor domain, kinesins	1e-14
cd01373	337	cd01373, KISc_KLP2_like, Kinesin motor domain, KLP	1e-14
cd01367	322	cd01367, KISc_KIF2_like, Kinesin motor domain, KIF	4e-14
cd01374	321	cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E	6e-14
PLN03188	1320	PLN03188, PLN03188, kinesin-12 family protein; Pro	2e-12
cd01368	345	cd01368, KISc_KIF23_like, Kinesin motor domain, KI	4e-11
COG5059	568	COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	9e-09
cd01376	319	cd01376, KISc_KID_like, Kinesin motor domain, KIF2	9e-09
cd01363	186	cd01363, Motor_domain, Myosin and Kinesin motor do	5e-08

>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain

 Score = 99.6 bits (249), Expect = 2e-24
 Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 99  RMTVAVRIRPLLVKELHMDVSSIE--ISPDRREMKVNDNAK---SYTFKLDHCLGQDTDQ 153
            + V VR+RPL  +E      S+        + + V           F  D        Q
Sbjct: 1   NIRVVVRVRPLNKREKSRKSPSVVPFPDKVGKTLTVRSPKNRQGEKKFTFDKVFDATASQ 60

Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             VF   A PL+D+   GYN  +FAYGQTGSGK+Y
Sbjct: 61  EDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTY 95

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division. Length = 335

>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain

 Score = 93.4 bits (233), Expect = 3e-22
 Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 7/107 (6%)

Query: 105 RIRPLLVKEL----HMDVSSIEISPDRREMKVNDNA-KSYTFKLDHCLGQDTDQTSVFTI 159
           R+RPL  +E        V+  E   + +E  V  N  +  TF  D     +  Q  V+  
Sbjct: 1   RVRPLNEREKSRGSSDIVNVDETDSEDKESVVITNKGREKTFTFDRVFDPEATQEFVYEE 60

Query: 160 IAQPLLDAAFNGYNVCLFAYGQTGSGKSY--RGDSTLNSSVLRPRVL 204
            A+PL+++   GYNV +FAYGQTGSGK+Y   GD       + PR L
Sbjct: 61  TAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGDPPEEEPGIIPRAL 107

Length = 326

>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain

 Score = 92.7 bits (231), Expect = 4e-22
 Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 99  RMTVAVRIRPLLVKELHMDVSSIEISPDR----REMKVNDNAKSYTFKLDHCLGQDTDQT 154
            + V VRIRPL  +E   + S I +  ++       K    A   +F  DH    ++ Q 
Sbjct: 1   NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQE 60

Query: 155 SVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
            V+   A+PL+++   GYN  +FAYGQTGSGK+Y
Sbjct: 61  DVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTY 94

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 328

>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily

 Score = 92.7 bits (231), Expect = 6e-22
 Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 4/88 (4%)

Query: 102 VAVRIRPLLVKE-LHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTII 160
           VAVR+RPLL KE L      + + P   ++ V  + KS+TF  D+     T Q  V+   
Sbjct: 5   VAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGTD-KSFTF--DYVFDPSTSQEEVYNTC 61

Query: 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             PL+D  F GYN  + AYGQTGSGK+Y
Sbjct: 62  VAPLVDGLFEGYNATVLAYGQTGSGKTY 89

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 341

>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins

 Score = 91.6 bits (228), Expect = 1e-21
 Identities = 42/121 (34%), Positives = 56/121 (46%), Gaps = 17/121 (14%)

Query: 98  SRMTVAVRIRPLLVKE--------LHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCL-- 147
           + + VAVR+RP   +E        + M      +   +         KS++F  DH    
Sbjct: 1   ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSF--DHSYWS 58

Query: 148 --GQD---TDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPR 202
              +D     Q  VF  + + LLD AF GYNVCLFAYGQTGSGKSY          + PR
Sbjct: 59  HDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPR 118

Query: 203 V 203
           +
Sbjct: 119 L 119

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively. Length = 356

>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

 Score = 89.6 bits (223), Expect = 6e-21
 Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 3/105 (2%)

Query: 102 VAVRIRPLLVKELHMDVSSIEISP-DRREMKVN-DNAKSYTFKLDHCLGQDTDQTSVFTI 159
           V  R+RPLL  E     S I     D   ++++    K  +F  D     D  Q  VF  
Sbjct: 6   VFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEE 65

Query: 160 IAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVL 204
           +  PL+ +A +GYNVC+FAYGQTGSGK+Y  +    +  + PR L
Sbjct: 66  V-SPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRAL 109

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329

>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

 Score = 81.2 bits (201), Expect = 9e-18
 Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 11/110 (10%)

Query: 98  SRMTVAVRIRPLLVKELHMDVSS-IEISPDRREMKVNDN------AKSYTFKLDHCLGQD 150
           S + V VR RP   +E     S  +E+S   +E+ V+         K+YTF  D   G +
Sbjct: 2   SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTF--DKVFGPE 59

Query: 151 TDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY--RGDSTLNSSV 198
            DQ  V++ +  P+LD    GYN  +FAYGQTG+GK+Y   GD T N   
Sbjct: 60  ADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGS 109

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 352

>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

 Score = 77.1 bits (190), Expect = 2e-16
 Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 19/119 (15%)

Query: 100 MTVAVRIRPLLVKELHMDVSSIEISPDRREMK-----------VNDNAKSYTFKLDHCLG 148
           + V VR+RP   K+     SSI++ PD + +            VN+  + ++FK D    
Sbjct: 2   IQVFVRVRPTPTKQ----GSSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFH 57

Query: 149 QDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYR---GDSTLNSSVLRPRVL 204
             + Q  V+  +A+P++D+A +GYN  +FAYGQTG+GK++    G  +     L PR L
Sbjct: 58  NAS-QEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRAL 115

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 334

>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 17/105 (16%)

Query: 99  RMTVAVRIRPLLVKELH---------MDVSSIEISPDRREMKVNDNA------KSYTFKL 143
            +TVAVR+RP   KE           +D   +   P   E    +          Y+F  
Sbjct: 1   SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSF-- 58

Query: 144 DHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
           D    + + Q  V+    +PL+D   NGYN  +FAYG TG+GK++
Sbjct: 59  DRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTH 103

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 338

>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

 Score = 73.5 bits (181), Expect = 4e-15
 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 4/112 (3%)

Query: 96  ECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTS 155
           EC+ + V  R RPL  KE      SI   P    + +  +    TF  D     +T Q  
Sbjct: 1   ECN-IKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDDGKTFSFDRVFPPNTTQED 59

Query: 156 VFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLR---PRVL 204
           V+  +A+P++D   NGYN  +FAYGQTGSGK+Y  +       L+   PR++
Sbjct: 60  VYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIV 111

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 325

>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 102 VAVRIRPLLVKELHMDVSSI-EISPDRREMKV-------NDNAKSYTFKLDHCLGQDTDQ 153
           V VR RPL  +E       I  +  +R ++ V        +  K +TF  D     ++ Q
Sbjct: 5   VVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTF--DAVYDPNSTQ 62

Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             V+   A+PL+D+   GYN  +FAYGQTG+GK++
Sbjct: 63  EDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTF 97

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 333

>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup

 Score = 71.7 bits (176), Expect = 1e-14
 Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 9/91 (9%)

Query: 102 VAVRIRPLLVKELHMDVSS----IEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVF 157
           V VRIRP    E+  D        ++S D      +   + +TF  DH    +T+Q  VF
Sbjct: 5   VVVRIRPP--NEIEADGGQGQCLKKLSSDTLVW-HSHPPRMFTF--DHVADSNTNQEDVF 59

Query: 158 TIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             + +PL++   +GYN  +FAYGQTGSGK+Y
Sbjct: 60  QSVGKPLVEDCLSGYNGSIFAYGQTGSGKTY 90

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 337

>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group

 Score = 70.8 bits (174), Expect = 4e-14
 Identities = 38/100 (38%), Positives = 49/100 (49%), Gaps = 9/100 (9%)

Query: 98  SRMTVAVRIRPLLVKELH---MDVSSIEISP--DRREMKVNDNAKSY----TFKLDHCLG 148
            ++TVAVR RPL  KEL     DV S E +P     E K   +   Y    TF+ D+   
Sbjct: 1   MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFD 60

Query: 149 QDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
           +      V+    +PL+   F G     FAYGQTGSGK+Y
Sbjct: 61  EAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTY 100

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 322

>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

 Score = 70.0 bits (172), Expect = 6e-14
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 101 TVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNA-KSYTFKLDHCLGQDTDQTSVFTI 159
            V+VR+RPL  +E   +  +  I  D           +S+TF  D   G ++    V+  
Sbjct: 3   KVSVRVRPLNPRESDNEQVAWSIDNDNTISLEESTPGQSFTF--DRVFGGESTNREVYER 60

Query: 160 IAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
           IA+P++ +A  GYN  +FAYGQT SGK++
Sbjct: 61  IAKPVVRSALEGYNGTIFAYGQTSSGKTF 89

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 321

>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional

 Score = 66.5 bits (162), Expect = 2e-12
 Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 19/188 (10%)

Query: 7   PR-ALFSSTPVKKNEGPIATLSSSNQSKPKEKFVKPATPKTPLATANYERCIQARRAMSA 65
           PR A+   T   + + P  +   S  S  K K  K   P   L +   +     R A + 
Sbjct: 7   PRNAILRETSSGEEQSPNPSSHKSKPSSRKLKSSKENAPPPDLNSLTSDLKPDHRSASAK 66

Query: 66  DRSPATPKIKLPRAN-----LIMRSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSS 120
            +SP  P+   P +N     L   ++ EN V+D    S + V VR++PL  K    ++  
Sbjct: 67  LKSPLPPRP--PSSNPLKRKLSAETAPENGVSD----SGVKVIVRMKPL-NKGEEGEMIV 119

Query: 121 IEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYG 180
            ++S D   + +N      TF  D     ++ Q  +F ++  PL++    G+N  +FAYG
Sbjct: 120 QKMSND--SLTINGQ----TFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYG 173

Query: 181 QTGSGKSY 188
           QTGSGK+Y
Sbjct: 174 QTGSGKTY 181

Length = 1320

>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 21/138 (15%)

Query: 100 MTVAVRIRPLLVKELHMDVS-SIEI------------SPDRREMKVNDNAKSYTFKLDHC 146
           + V +R+RPL   EL  +    IE+                R+ + N   K   F     
Sbjct: 3   VKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKV 62

Query: 147 LGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPR---V 203
            G +T Q   F   A PL+     G N  LF YG T SGK+Y    +     + PR   V
Sbjct: 63  FGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDV 122

Query: 204 LFYPGFSWSHSGWTGWVS 221
           +F      S  G++ +VS
Sbjct: 123 IFN-----SIGGYSVFVS 135

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 345

>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton]

 Score = 55.1 bits (133), Expect = 9e-09
 Identities = 22/49 (44%), Positives = 29/49 (59%)

Query: 140 TFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
           T+  D   G    Q  V+    +PL+D+   GYN  +FAYGQTGSGK+Y
Sbjct: 57  TYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTY 105

Length = 568

>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup

 Score = 54.8 bits (132), Expect = 9e-09
 Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 18/118 (15%)

Query: 99  RMTVAVRIRPLLVKELHMDVS------------SIEISPDRREMKVNDNAKSYTFKLDHC 146
            + V VR+RP L  E                  S+EI   R   +     K Y F  D  
Sbjct: 1   NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRNRGET----KKYQF--DAF 54

Query: 147 LGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVL 204
            G +  Q  +F+   +P++    +G N  +FAYG TG+GK++      N   L PR L
Sbjct: 55  YGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTL 112

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 319

>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain

 Score = 51.4 bits (123), Expect = 5e-08
 Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 156 VFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVL 204
           VF  +  PLL +A +GYNVC+FAYGQTGSGK+Y  +     + + PR +
Sbjct: 8   VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTV 55

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
cd01370	338	KISc_KIP3_like Kinesin motor domain, KIP3-like sub	100.0
cd01368	345	KISc_KIF23_like Kinesin motor domain, KIF23-like s	100.0
KOG4280|consensus	574		100.0
KOG0243|consensus	1041		100.0
cd01373	337	KISc_KLP2_like Kinesin motor domain, KLP2-like sub	100.0
PLN03188	1320	kinesin-12 family protein; Provisional	100.0
cd01365	356	KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p	100.0
cd01367	322	KISc_KIF2_like Kinesin motor domain, KIF2-like gro	100.0
KOG0242|consensus	675		100.0
cd01376	319	KISc_KID_like Kinesin motor domain, KIF22/Kid-like	100.0
cd01374	321	KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like	100.0
cd01371	333	KISc_KIF3 Kinesin motor domain, kinesins II or KIF	100.0
KOG0245|consensus	1221		100.0
cd01369	325	KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy	100.0
KOG0240|consensus	607		100.0
cd01364	352	KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind	100.0
cd01372	341	KISc_KIF4 Kinesin motor domain, KIF4-like subfamil	100.0
cd01366	329	KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/	100.0
cd01375	334	KISc_KIF9_like Kinesin motor domain, KIF9-like sub	100.0
cd00106	328	KISc Kinesin motor domain. This catalytic (head) d	100.0
KOG0239|consensus	670		100.0
smart00129	335	KISc Kinesin motor, catalytic domain. ATPase. Micr	100.0
KOG0246|consensus	676		100.0
KOG0241|consensus	1714		100.0
PF00225	335	Kinesin: Kinesin motor domain; InterPro: IPR001752	100.0
KOG0247|consensus	809		99.97
COG5059	568	KIP1 Kinesin-like protein [Cytoskeleton]	99.94
KOG0244|consensus	913		99.89
cd01363	186	Motor_domain Myosin and Kinesin motor domain. Thes	99.71
COG0556	663	UvrB Helicase subunit of the DNA excision repair c	95.67
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	94.97
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	93.2
PRK06893	229	DNA replication initiation factor; Validated	93.1
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	92.55
PRK14086	617	dnaA chromosomal replication initiation protein; P	91.96
PRK09087	226	hypothetical protein; Validated	91.88
PRK06620	214	hypothetical protein; Validated	91.73
PRK05642	234	DNA replication initiation factor; Validated	90.94
PRK06526	254	transposase; Provisional	90.04
PRK14088	440	dnaA chromosomal replication initiation protein; P	89.91
PRK08084	235	DNA replication initiation factor; Provisional	89.1
PF04851	184	ResIII: Type III restriction enzyme, res subunit;	88.73
PRK14087	450	dnaA chromosomal replication initiation protein; P	88.68
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	88.43
PRK12377	248	putative replication protein; Provisional	88.18
PRK08116	268	hypothetical protein; Validated	87.76
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	87.75
PRK00149	450	dnaA chromosomal replication initiation protein; R	87.17
PRK00411	394	cdc6 cell division control protein 6; Reviewed	87.11
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	86.56
PF01935	229	DUF87: Domain of unknown function DUF87; InterPro:	86.15
PRK07952	244	DNA replication protein DnaC; Validated	85.97
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	85.96
PRK08903	227	DnaA regulatory inactivator Hda; Validated	85.68
TIGR02533	486	type_II_gspE general secretory pathway protein E.	85.26
PF00270	169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	85.2
TIGR02538	564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	85.04
PRK08181	269	transposase; Validated	84.89
PRK10436	462	hypothetical protein; Provisional	84.78
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	84.25
COG1484	254	DnaC DNA replication protein [DNA replication, rec	84.22
PF13245	76	AAA_19: Part of AAA domain	83.95
COG0593	408	DnaA ATPase involved in DNA replication initiation	83.93
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	83.74
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	83.59
PF12846	304	AAA_10: AAA-like domain	82.87
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	82.6
PRK06835	329	DNA replication protein DnaC; Validated	82.59
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	82.52
PRK08727	233	hypothetical protein; Validated	82.12
PRK08939	306	primosomal protein DnaI; Reviewed	82.1
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	81.87
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	81.71
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	80.8
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	80.69
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	80.62
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	80.56

>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup

Probab=100.00  E-value=9.8e-42  Score=313.65  Aligned_cols=164  Identities=23%  Similarity=0.298  Sum_probs=148.2

Q ss_pred             CeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCC------------CCceeeeeceeeCCCCCcchhhcccchhhH
Q psy17370         99 RMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDN------------AKSYTFKLDHCLGQDTDQTSVFTIIAQPLL  165 (262)
Q Consensus        99 ~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~------------~~~~~f~FD~vf~~~~~q~~vy~~~~~plv  165 (262)
                      +|+|+|||||++..|.. +...+|.+.++...+..+..            ...+.|.||+||+++++|++||+.+++|+|
T Consensus         1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv   80 (338)
T cd01370           1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV   80 (338)
T ss_pred             CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence            59999999999999876 67788888877655544432            146899999999999999999999999999


Q ss_pred             hhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc----cceEEEEEEEEEE---EEecCC---CCc
Q psy17370        166 DAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---AVDFGC---GSW  235 (262)
Q Consensus       166 ~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l~Dll~---~~l  235 (262)
                      +.+++|+|+||||||||||||||||+|+..++|||||++++||..++.    ..+.|+|||+|||   ++|||.   ..|
T Consensus        81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l  160 (338)
T cd01370          81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPL  160 (338)
T ss_pred             HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCc
Confidence            999999999999999999999999999999999999999999998864    4689999999999   999995   579


Q ss_pred             eeeecCCCcEEEcCceEEecCChhhhC
Q psy17370        236 RFESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       236 ~i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      +|++|.++++++.|++++.|.+.+|++
T Consensus       161 ~i~ed~~~~~~v~gl~~~~v~s~~e~~  187 (338)
T cd01370         161 ELREDPNQGIVVAGLTEHQPKSAEEIL  187 (338)
T ss_pred             eEEEcCCCCEEeCCcEEEEeCCHHHHH
Confidence            999999999999999999999999975

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec

>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup

Probab=100.00  E-value=2.1e-41  Score=312.15  Aligned_cols=162  Identities=26%  Similarity=0.326  Sum_probs=146.0

Q ss_pred             CeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCC------------CCceeeeeceeeCCCCCcchhhcccchhhH
Q psy17370         99 RMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDN------------AKSYTFKLDHCLGQDTDQTSVFTIIAQPLL  165 (262)
Q Consensus        99 ~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~------------~~~~~f~FD~vf~~~~~q~~vy~~~~~plv  165 (262)
                      +|+|+||+||++..|.. .+..+|.+.++...+...+.            ...+.|.||+||+++++|++||+.++.|+|
T Consensus         2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v   81 (345)
T cd01368           2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLV   81 (345)
T ss_pred             CEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHH
Confidence            79999999999999877 66777777766554433321            257899999999999999999999999999


Q ss_pred             hhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCccceEEEEEEEEEE---EEecCCC---------
Q psy17370        166 DAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSHSGWTGWVSCVVVI---AVDFGCG---------  233 (262)
Q Consensus       166 ~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~~~~~~~vS~~EIy---l~Dll~~---------  233 (262)
                      +.+++|+|+||||||||||||||||+|+..++|||||++++||..+.+  +.|+|||+|||   |+|||..         
T Consensus        82 ~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~--~~v~~S~~EIyne~v~DLL~~~~~~~~~~~  159 (345)
T cd01368          82 QDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG--YSVFVSYVEIYNNYIYDLLEDSPSSTKKRQ  159 (345)
T ss_pred             HHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh--eeEEEEEEEEeCCEeEeCCCCccccccCCC
Confidence            999999999999999999999999999999999999999999999877  99999999999   9999953         


Q ss_pred             CceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370        234 SWRFESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       234 ~l~i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      .|.|++|.+++++|.|++++.|.+.+|++
T Consensus       160 ~l~i~ed~~~~~~i~gl~~~~v~s~~e~~  188 (345)
T cd01368         160 SLRLREDHNGNMYVAGLTEVEVSSTEEAR  188 (345)
T ss_pred             ceEEEECCCCCEEecCCEEEEeCCHHHHH
Confidence            58999999999999999999999999974

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a

>KOG4280|consensus

Probab=100.00  E-value=3e-42  Score=328.84  Aligned_cols=166  Identities=24%  Similarity=0.364  Sum_probs=148.6

Q ss_pred             CCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCC-----CceeeeeceeeCCCCCcchhhcccchhhHhhhhC
Q psy17370         97 CSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNA-----KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFN  170 (262)
Q Consensus        97 ~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~-----~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~  170 (262)
                      ..+|+|++|+||++..+.. ....++.++.....+.+.+..     ..+.|+||+||+++++|++||+.++.|+|+.+|+
T Consensus         4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~   83 (574)
T KOG4280|consen    4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE   83 (574)
T ss_pred             ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence            5689999999999998776 556666676666666554433     6788999999999999999999999999999999


Q ss_pred             CCceeEeeeeccCCCCceecCCC-CCCCchHhhhhhccccccCcc----ceEEEEEEEEEE---EEecCCC----Cceee
Q psy17370        171 GYNVCLFAYGQTGSGKSYRGDST-LNSSVLRPRVLFYPGFSWSHS----GWTGWVSCVVVI---AVDFGCG----SWRFE  238 (262)
Q Consensus       171 G~n~~ifaYG~tgSGKTyTm~G~-~~~~Giipr~~~~lf~~~~~~----~~~~~vS~~EIy---l~Dll~~----~l~i~  238 (262)
                      |||+||||||||||||||||+|. +...|||||++.+||..+++.    .|.|+|||+|||   |+|||+.    .|.|+
T Consensus        84 GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lr  163 (574)
T KOG4280|consen   84 GYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLELR  163 (574)
T ss_pred             ccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCceee
Confidence            99999999999999999999999 688999999999999999865    399999999999   9998864    89999


Q ss_pred             ecCCCcEEEcCceEEecCChhhhC
Q psy17370        239 SKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       239 ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      |+++.||||+|++++.|.++++++
T Consensus       164 e~p~~Gv~V~nlse~~v~s~~d~~  187 (574)
T KOG4280|consen  164 EDPKCGVYVENLSEMDVESAEDAQ  187 (574)
T ss_pred             EcCCCceEecCcceeecCCHHHHH
Confidence            999999999999999999999874

>KOG0243|consensus

Probab=100.00  E-value=2.3e-41  Score=335.96  Aligned_cols=167  Identities=23%  Similarity=0.337  Sum_probs=145.8

Q ss_pred             CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCC--C--CceeeeeceeeCCCCCcchhhcccchhhHhhhhC
Q psy17370         96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDN--A--KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFN  170 (262)
Q Consensus        96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~--~--~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~  170 (262)
                      ...||+|+|||||++++|.. ....+|.+++....|.+...  .  ..+.|+||+||++.+.|.+||+.++.|+|+.||.
T Consensus        47 ~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~  126 (1041)
T KOG0243|consen   47 KEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLE  126 (1041)
T ss_pred             CCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhc
Confidence            46799999999999999987 66667778775555544333  2  4789999999999999999999999999999999


Q ss_pred             CCceeEeeeeccCCCCceecCC--------CCCCCchHhhhhhccccccCc--cceEEEEEEEEEE---EEecCC-----
Q psy17370        171 GYNVCLFAYGQTGSGKSYRGDS--------TLNSSVLRPRVLFYPGFSWSH--SGWTGWVSCVVVI---AVDFGC-----  232 (262)
Q Consensus       171 G~n~~ifaYG~tgSGKTyTm~G--------~~~~~Giipr~~~~lf~~~~~--~~~~~~vS~~EIy---l~Dll~-----  232 (262)
                      |||||||||||||+||||||.|        .+.++|||||++.+||..++.  .+|.++|||+|+|   |.|||.     
T Consensus       127 GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~  206 (1041)
T KOG0243|consen  127 GYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTS  206 (1041)
T ss_pred             cCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCcccc
Confidence            9999999999999999999999        458999999999999999874  5899999999999   999985     


Q ss_pred             -CCceeeecC-----CCcEEEcCceEEecCChhhhC
Q psy17370        233 -GSWRFESKP-----SHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       233 -~~l~i~ed~-----~~~v~v~gl~~~~V~s~~e~l  262 (262)
                       ..+.++++.     ++||+|.|+.+..|.+..|+|
T Consensus       207 ~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~  242 (1041)
T KOG0243|consen  207 DKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIY  242 (1041)
T ss_pred             ccccccccCCcccCCcCcEEEecceeeeecchhHHH
Confidence             334566665     589999999999999999874

>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup

Probab=100.00  E-value=1.3e-40  Score=306.02  Aligned_cols=163  Identities=23%  Similarity=0.331  Sum_probs=142.1

Q ss_pred             CCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeE
Q psy17370         98 SRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCL  176 (262)
Q Consensus        98 ~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~i  176 (262)
                      .+|+|+||+||+...|.. ....++...+++..+....  ..+.|.||+||+++++|++||+.+++|+|+.+++|+|+||
T Consensus         1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~--~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti   78 (337)
T cd01373           1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH--PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSI   78 (337)
T ss_pred             CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC--CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeE
Confidence            379999999999998876 4455666655554444332  3689999999999999999999999999999999999999


Q ss_pred             eeeeccCCCCceecCCCC--------CCCchHhhhhhccccccCc--------cceEEEEEEEEEE---EEecCC---CC
Q psy17370        177 FAYGQTGSGKSYRGDSTL--------NSSVLRPRVLFYPGFSWSH--------SGWTGWVSCVVVI---AVDFGC---GS  234 (262)
Q Consensus       177 faYG~tgSGKTyTm~G~~--------~~~Giipr~~~~lf~~~~~--------~~~~~~vS~~EIy---l~Dll~---~~  234 (262)
                      ||||||||||||||+|+.        .++|||||++++||..++.        ..|.++|||+|||   ++|||.   ..
T Consensus        79 ~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~  158 (337)
T cd01373          79 FAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRN  158 (337)
T ss_pred             EEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCC
Confidence            999999999999999976        3689999999999987643        3789999999999   999985   56


Q ss_pred             ceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370        235 WRFESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       235 l~i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      ++++++..+++++.|++++.|.+.+|++
T Consensus       159 l~i~e~~~~~~~v~gl~~~~v~s~~e~~  186 (337)
T cd01373         159 LKIREDIKKGVYVENLTEEYVSSYEDVY  186 (337)
T ss_pred             ceEEECCCCCEEeCCCEEEEeCCHHHHH
Confidence            9999999999999999999999999974

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second

>PLN03188 kinesin-12 family protein; Provisional

Probab=100.00  E-value=2.9e-40  Score=331.51  Aligned_cols=160  Identities=23%  Similarity=0.348  Sum_probs=138.1

Q ss_pred             CCCCeEEEEEeCCCCccccCCCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCcee
Q psy17370         96 ECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVC  175 (262)
Q Consensus        96 ~~~~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~  175 (262)
                      .+++|+|+|||||++..|. +...++.+.++.  +.+    ..+.|.||+||+++++|++||+.++.|||+.+|+|||+|
T Consensus        96 ~ds~VkV~VRVRPl~~~E~-g~~iV~~~s~ds--l~I----~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaT  168 (1320)
T PLN03188         96 SDSGVKVIVRMKPLNKGEE-GEMIVQKMSNDS--LTI----NGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSS  168 (1320)
T ss_pred             CCCCeEEEEEcCCCCCccC-CCeeEEEcCCCe--EEE----eCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcce
Confidence            3679999999999998863 233344444333  333    357899999999999999999999999999999999999


Q ss_pred             EeeeeccCCCCceecCCCC----------CCCchHhhhhhccccccCc---------cceEEEEEEEEEE---EEecCC-
Q psy17370        176 LFAYGQTGSGKSYRGDSTL----------NSSVLRPRVLFYPGFSWSH---------SGWTGWVSCVVVI---AVDFGC-  232 (262)
Q Consensus       176 ifaYG~tgSGKTyTm~G~~----------~~~Giipr~~~~lf~~~~~---------~~~~~~vS~~EIy---l~Dll~-  232 (262)
                      |||||||||||||||+|+.          .++|||||++++||..+..         ..|.|+|||+|||   |+|||. 
T Consensus       169 IFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp  248 (1320)
T PLN03188        169 VFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDP  248 (1320)
T ss_pred             eecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccc
Confidence            9999999999999999963          5789999999999988752         3688999999999   999985 


Q ss_pred             --CCceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370        233 --GSWRFESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       233 --~~l~i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                        .+|+|++|..+|+||.|++++.|.+.+|++
T Consensus       249 ~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l  280 (1320)
T PLN03188        249 SQKNLQIREDVKSGVYVENLTEEYVKTMKDVT  280 (1320)
T ss_pred             ccCCceEEEcCCCCeEeCCCeEEeCCCHHHHH
Confidence              569999999999999999999999999874

>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins

Probab=100.00  E-value=3.9e-40  Score=305.02  Aligned_cols=165  Identities=28%  Similarity=0.398  Sum_probs=148.8

Q ss_pred             CCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcC-----CCCceeeeeceeeCCC-------CCcchhhcccchhh
Q psy17370         98 SRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVND-----NAKSYTFKLDHCLGQD-------TDQTSVFTIIAQPL  164 (262)
Q Consensus        98 ~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~-----~~~~~~f~FD~vf~~~-------~~q~~vy~~~~~pl  164 (262)
                      ++|+|+||+||++..|.. ++..++.+.++...+..+.     ....+.|.||+||+++       ++|++||+.++.|+
T Consensus         1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~   80 (356)
T cd01365           1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL   80 (356)
T ss_pred             CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence            479999999999999877 7777888888665565554     2468899999999998       99999999999999


Q ss_pred             HhhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecCC----
Q psy17370        165 LDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFGC----  232 (262)
Q Consensus       165 v~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll~----  232 (262)
                      |+.+++|+|+||||||||||||||||+|+..++|||||++++||..+..     ..+.|+|||+|||   ++|||.    
T Consensus        81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~  160 (356)
T cd01365          81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKK  160 (356)
T ss_pred             HHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCcc
Confidence            9999999999999999999999999999999999999999999998864     3689999999999   999985    


Q ss_pred             --CCceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370        233 --GSWRFESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       233 --~~l~i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                        ..|+++++..+++++.|++++.|.+.+|++
T Consensus       161 ~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~  192 (356)
T cd01365         161 NKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQ  192 (356)
T ss_pred             CCcCceEEECCCCCEEeCCCEEEEeCCHHHHH
Confidence              358999999999999999999999999974

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.

>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group

Probab=100.00  E-value=3.4e-40  Score=301.64  Aligned_cols=165  Identities=22%  Similarity=0.212  Sum_probs=146.1

Q ss_pred             CCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEE-cCCC-------CceeeeeceeeCCCCCcchhhcccchhhHhhh
Q psy17370         98 SRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKV-NDNA-------KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAA  168 (262)
Q Consensus        98 ~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~-~~~~-------~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~  168 (262)
                      .+|+|+|||||++..|.. ++..++.+.+++..... +...       +.+.|+||+||+++++|++||+.+++|+|+.+
T Consensus         1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~   80 (322)
T cd01367           1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV   80 (322)
T ss_pred             CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence            379999999999999876 56677777776332222 1111       36899999999999999999999999999999


Q ss_pred             hCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc--cceEEEEEEEEEE---EEecCC--CCceeeecC
Q psy17370        169 FNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH--SGWTGWVSCVVVI---AVDFGC--GSWRFESKP  241 (262)
Q Consensus       169 l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~--~~~~~~vS~~EIy---l~Dll~--~~l~i~ed~  241 (262)
                      ++|+|+||||||||||||||||+|+..++|||||++++||..+++  ..+.++|||+|||   ++|||.  ..+++++|.
T Consensus        81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~l~i~~~~  160 (322)
T cd01367          81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPNDDLGVTVSFFEIYGGKLFDLLNDRKRLSVLEDG  160 (322)
T ss_pred             hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccccccEEEEEEEeeecCchhhhccCccceeEEEcC
Confidence            999999999999999999999999999999999999999999876  4899999999999   999884  689999999


Q ss_pred             CCcEEEcCceEEecCChhhhC
Q psy17370        242 SHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       242 ~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      .++++|.|++++.|.+.+|++
T Consensus       161 ~~~~~v~~l~~~~v~s~~e~~  181 (322)
T cd01367         161 KGNVQIVGLTEKPVTSVDELL  181 (322)
T ss_pred             CCCEEeCCCEEEEeCCHHHHH
Confidence            999999999999999999874

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo

>KOG0242|consensus

Probab=100.00  E-value=6e-40  Score=322.55  Aligned_cols=166  Identities=23%  Similarity=0.313  Sum_probs=149.4

Q ss_pred             CCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCC-----CceeeeeceeeCCCCCcchhhcccchhhHhhhhC
Q psy17370         97 CSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNA-----KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFN  170 (262)
Q Consensus        97 ~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~-----~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~  170 (262)
                      ...|.|+||+||++..+.. ++.+.|.+..+...+......     ....|.||+||+++++|++||+..++|+|..+++
T Consensus         5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~   84 (675)
T KOG0242|consen    5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLE   84 (675)
T ss_pred             cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhc
Confidence            4689999999999998554 677778887777655543322     2489999999999999999999999999999999


Q ss_pred             CCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc---cceEEEEEEEEEE---EEecCCCC---ceeeecC
Q psy17370        171 GYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH---SGWTGWVSCVVVI---AVDFGCGS---WRFESKP  241 (262)
Q Consensus       171 G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~---~~~~~~vS~~EIy---l~Dll~~~---l~i~ed~  241 (262)
                      |+|++|||||||||||||||.|...+|||||+++++||..+.+   +.|.+.|||+|||   |+|||+.+   |+|+||.
T Consensus        85 G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irED~  164 (675)
T KOG0242|consen   85 GFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDLRLREDS  164 (675)
T ss_pred             CcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCceEeEcC
Confidence            9999999999999999999999999999999999999998876   4799999999999   99999755   9999999


Q ss_pred             CCcEEEcCceEEecCChhhhC
Q psy17370        242 SHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       242 ~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      .+|++|.||++..|.|.+|++
T Consensus       165 ~~gi~V~gL~e~~v~s~e~~~  185 (675)
T KOG0242|consen  165 EGGIVVPGLTEETVSSREELL  185 (675)
T ss_pred             CCCEEecCCeeecCCCHHHHH
Confidence            999999999999999999974

>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup

Probab=100.00  E-value=4.2e-39  Score=294.05  Aligned_cols=164  Identities=21%  Similarity=0.255  Sum_probs=142.2

Q ss_pred             CeEEEEEeCCCCccccCCCcceEEEcCCc---eEEEEcCC---CCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCC
Q psy17370         99 RMTVAVRIRPLLVKELHMDVSSIEISPDR---REMKVNDN---AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGY  172 (262)
Q Consensus        99 ~IkV~vRiRP~~~~E~~~~~~~i~~~~~~---~~i~~~~~---~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~  172 (262)
                      +|+|+|||||+...|.....++.....++   ..+.+...   ...+.|.||+||+++++|++||+.++.|+|+.+++|+
T Consensus         1 ~i~V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~   80 (319)
T cd01376           1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQ   80 (319)
T ss_pred             CcEEEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCCC
Confidence            68999999999988855444433333322   23433322   2678999999999999999999999999999999999


Q ss_pred             ceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCcc--ceEEEEEEEEEE---EEecCC---CCceeeecCCCc
Q psy17370        173 NVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSHS--GWTGWVSCVVVI---AVDFGC---GSWRFESKPSHE  244 (262)
Q Consensus       173 n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~~--~~~~~vS~~EIy---l~Dll~---~~l~i~ed~~~~  244 (262)
                      |+||||||||||||||||+|+..++|||||++++||..+++.  .+.|.|||+|||   ++|||.   ..++|+++++++
T Consensus        81 n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~  160 (319)
T cd01376          81 NATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKDGN  160 (319)
T ss_pred             ceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhccccceEEEEEEEEECCEeeEccCCCCCCceEEEcCCCC
Confidence            999999999999999999999999999999999999888654  889999999999   999985   579999999999


Q ss_pred             EEEcCceEEecCChhhhC
Q psy17370        245 IYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       245 v~v~gl~~~~V~s~~e~l  262 (262)
                      +++.|++++.|.+.+|++
T Consensus       161 ~~v~gl~~~~v~s~~e~~  178 (319)
T cd01376         161 ILIVGLTSKPIKSMAEFE  178 (319)
T ss_pred             EEeeCCEEEEeCCHHHHH
Confidence            999999999999999874

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through

>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

Probab=100.00  E-value=5.3e-39  Score=293.56  Aligned_cols=163  Identities=22%  Similarity=0.345  Sum_probs=147.9

Q ss_pred             CeEEEEEeCCCCccccCCCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEee
Q psy17370         99 RMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFA  178 (262)
Q Consensus        99 ~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifa  178 (262)
                      +|+|+||+||++..|...+.++|.+.++.. +...+....+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||
T Consensus         1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~-v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~a   79 (321)
T cd01374           1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNT-ISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFA   79 (321)
T ss_pred             CeEEEEEcCcCCcccccCCcceEEECCCCE-EEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEe
Confidence            599999999999988776778888888744 4444445789999999999999999999999999999999999999999


Q ss_pred             eeccCCCCceecCCCCCCCchHhhhhhccccccCc---cceEEEEEEEEEE---EEecCC---CCceeeecCCCcEEEcC
Q psy17370        179 YGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH---SGWTGWVSCVVVI---AVDFGC---GSWRFESKPSHEIYLSV  249 (262)
Q Consensus       179 YG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~---~~~~~~vS~~EIy---l~Dll~---~~l~i~ed~~~~v~v~g  249 (262)
                      ||+|||||||||+|+..++|||||++++||..+.+   ..|.|+|||+|||   ++|||.   ..+++++|+.+++++.|
T Consensus        80 yG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~~v~g  159 (321)
T cd01374          80 YGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAG  159 (321)
T ss_pred             ecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCEEeCC
Confidence            99999999999999999999999999999987753   5889999999999   999985   56999999999999999


Q ss_pred             ceEEecCChhhhC
Q psy17370        250 SVLTDITKFIEVY  262 (262)
Q Consensus       250 l~~~~V~s~~e~l  262 (262)
                      ++++.|.+.+|++
T Consensus       160 l~~~~v~s~~e~~  172 (321)
T cd01374         160 LTEEIVTSPEHLL  172 (321)
T ss_pred             ceEEEeCCHHHHH
Confidence            9999999999874

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to

>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins

Probab=100.00  E-value=4.3e-39  Score=295.58  Aligned_cols=165  Identities=22%  Similarity=0.336  Sum_probs=147.9

Q ss_pred             CCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCC-----CCceeeeeceeeCCCCCcchhhcccchhhHhhhhCC
Q psy17370         98 SRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDN-----AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNG  171 (262)
Q Consensus        98 ~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~-----~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G  171 (262)
                      ++|+|+||+||++..|.. ++..++.++++...+.+...     ...+.|.||+||+++++|++||+.++.|+|+.+++|
T Consensus         1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G   80 (333)
T cd01371           1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG   80 (333)
T ss_pred             CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence            479999999999998876 66677888776666655432     267899999999999999999999999999999999


Q ss_pred             CceeEeeeeccCCCCceecCCCCC---CCchHhhhhhccccccCc---cceEEEEEEEEEE---EEecCC----CCceee
Q psy17370        172 YNVCLFAYGQTGSGKSYRGDSTLN---SSVLRPRVLFYPGFSWSH---SGWTGWVSCVVVI---AVDFGC----GSWRFE  238 (262)
Q Consensus       172 ~n~~ifaYG~tgSGKTyTm~G~~~---~~Giipr~~~~lf~~~~~---~~~~~~vS~~EIy---l~Dll~----~~l~i~  238 (262)
                      +|+||||||+|||||||||+|+..   ++|||||++++||..+..   ..|.|.|||+|||   ++|||.    ..++++
T Consensus        81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~  160 (333)
T cd01371          81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELK  160 (333)
T ss_pred             CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEE
Confidence            999999999999999999999987   999999999999987754   5899999999999   999995    467999


Q ss_pred             ecCCCcEEEcCceEEecCChhhhC
Q psy17370        239 SKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       239 ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      +++.++++|.|++++.|.+.+|++
T Consensus       161 ~~~~~~~~v~~l~~~~v~s~~~~~  184 (333)
T cd01371         161 ERPDRGVYVKDLSMFVVKNAEEMD  184 (333)
T ss_pred             EcCCCCEEeCCCEEEEeCCHHHHH
Confidence            999999999999999999999874

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain

>KOG0245|consensus

Probab=100.00  E-value=3.1e-40  Score=323.90  Aligned_cols=165  Identities=27%  Similarity=0.376  Sum_probs=152.0

Q ss_pred             CCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCC-Cceeeeeceee-------CCCCCcchhhcccchhhHhh
Q psy17370         97 CSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNA-KSYTFKLDHCL-------GQDTDQTSVFTIIAQPLLDA  167 (262)
Q Consensus        97 ~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~-~~~~f~FD~vf-------~~~~~q~~vy~~~~~plv~~  167 (262)
                      ..+|+|.||+||++.+|.. ...++|.+.++.+++..+.+. ....|+||+.|       +..++|..||+.++.++|++
T Consensus         3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~   82 (1221)
T KOG0245|consen    3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH   82 (1221)
T ss_pred             CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence            4689999999999999988 788999999999988887744 66779999999       44588999999999999999


Q ss_pred             hhCCCceeEeeeeccCCCCceecCCCC--CCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecCC-----
Q psy17370        168 AFNGYNVCLFAYGQTGSGKSYRGDSTL--NSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFGC-----  232 (262)
Q Consensus       168 ~l~G~n~~ifaYG~tgSGKTyTm~G~~--~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll~-----  232 (262)
                      +++|||+||||||||||||+|||+|..  +++|||||.|++||.++..     ..|.|.|||+|||   +.|||+     
T Consensus        83 AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~k  162 (1221)
T KOG0245|consen   83 AFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSK  162 (1221)
T ss_pred             HhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCC
Confidence            999999999999999999999999998  9999999999999999864     4899999999999   999885     


Q ss_pred             CCceeeecCCCcEEEcCceEEecCChhhh
Q psy17370        233 GSWRFESKPSHEIYLSVSVLTDITKFIEV  261 (262)
Q Consensus       233 ~~l~i~ed~~~~v~v~gl~~~~V~s~~e~  261 (262)
                      ++|++||++..|+||+.|+.+.|+|..|+
T Consensus       163 g~LRVREHP~lGPYVedLS~~aV~Sy~dI  191 (1221)
T KOG0245|consen  163 GGLRVREHPILGPYVEDLSKLAVTSYADI  191 (1221)
T ss_pred             CCceeeccCccChhHhHhhhcccccHHHH
Confidence            89999999999999999999999998774

>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

Probab=100.00  E-value=1.2e-38  Score=291.77  Aligned_cols=164  Identities=25%  Similarity=0.349  Sum_probs=147.6

Q ss_pred             CCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeE
Q psy17370         98 SRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCL  176 (262)
Q Consensus        98 ~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~i  176 (262)
                      ++|+|+||+||++..|.. ++..++.+.++ ..+.+......+.|.||+||+++++|++||+.+++|+|+.+++|+|+||
T Consensus         2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~-~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i   80 (325)
T cd01369           2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGE-DTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTI   80 (325)
T ss_pred             CCeEEEEEcCcCChhhhccCCceEEEEcCC-CEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceE
Confidence            489999999999998865 66777888766 4555555567889999999999999999999999999999999999999


Q ss_pred             eeeeccCCCCceecCCCCC---CCchHhhhhhccccccCc----cceEEEEEEEEEE---EEecCC---CCceeeecCCC
Q psy17370        177 FAYGQTGSGKSYRGDSTLN---SSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---AVDFGC---GSWRFESKPSH  243 (262)
Q Consensus       177 faYG~tgSGKTyTm~G~~~---~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l~Dll~---~~l~i~ed~~~  243 (262)
                      ||||+|||||||||+|+..   ++|||||++++||..+.+    .+|.|+|||+|||   ++||+.   .+++++++..+
T Consensus        81 ~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~  160 (325)
T cd01369          81 FAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNR  160 (325)
T ss_pred             EEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEEcCCC
Confidence            9999999999999999987   899999999999988754    3789999999999   999884   56999999999


Q ss_pred             cEEEcCceEEecCChhhhC
Q psy17370        244 EIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       244 ~v~v~gl~~~~V~s~~e~l  262 (262)
                      ++++.|++++.|.+.+|++
T Consensus       161 ~~~v~gl~~~~v~s~~e~~  179 (325)
T cd01369         161 GVYVKGLTERFVSSPEEVL  179 (325)
T ss_pred             CEEEcCCEEEEcCCHHHHH
Confidence            9999999999999999974

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c

>KOG0240|consensus

Probab=100.00  E-value=2.4e-39  Score=303.25  Aligned_cols=167  Identities=22%  Similarity=0.228  Sum_probs=144.6

Q ss_pred             CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCce
Q psy17370         96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNV  174 (262)
Q Consensus        96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~  174 (262)
                      ..++|+|+||+||++..|.. ++..+....+....+.+......+.|.||+||.++++|++||+.+++|+|++||.|||+
T Consensus         5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNG   84 (607)
T KOG0240|consen    5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNG   84 (607)
T ss_pred             CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhcccce
Confidence            47899999999999999877 44433333442444555444456999999999999999999999999999999999999


Q ss_pred             eEeeeeccCCCCceecCCCCC---CCchHhhhhhccccccCc----cceEEEEEEEEEE------EEecCCCCceeeecC
Q psy17370        175 CLFAYGQTGSGKSYRGDSTLN---SSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI------AVDFGCGSWRFESKP  241 (262)
Q Consensus       175 ~ifaYG~tgSGKTyTm~G~~~---~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy------l~Dll~~~l~i~ed~  241 (262)
                      ||||||||||||||||.|...   ..|||||.+++||..+..    -+|.|+|||+|||      |+|+-+.||.++||.
T Consensus        85 TvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsvheDK  164 (607)
T KOG0240|consen   85 TVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSVHEDK  164 (607)
T ss_pred             eEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCceeeccc
Confidence            999999999999999999874   679999999999998864    4899999999999      555557999999998


Q ss_pred             CCcEEEcCceEEecCChhhhC
Q psy17370        242 SHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       242 ~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      ..++||+|+++..|.+++|||
T Consensus       165 ~~v~~vkG~t~~~v~s~d~v~  185 (607)
T KOG0240|consen  165 NRVPYVKGVTERFVSSPDEVL  185 (607)
T ss_pred             CCCceecCceeEEecCHHHHH
Confidence            899999999999999999985

>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

Probab=100.00  E-value=1.9e-38  Score=293.27  Aligned_cols=165  Identities=25%  Similarity=0.381  Sum_probs=148.0

Q ss_pred             CCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCC----CceeeeeceeeCCCCCcchhhcccchhhHhhhhCCC
Q psy17370         98 SRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNA----KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGY  172 (262)
Q Consensus        98 ~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~----~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~  172 (262)
                      .+|+|+||+||+...|.. +...++.+.++...+......    ..+.|.||+||+++++|++||+.++.|+|+.+++|+
T Consensus         2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~   81 (352)
T cd01364           2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGY   81 (352)
T ss_pred             CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence            589999999999999876 677788888876666665542    678999999999999999999999999999999999


Q ss_pred             ceeEeeeeccCCCCceecCCCC-----------CCCchHhhhhhccccccCc--cceEEEEEEEEEE---EEecCCC---
Q psy17370        173 NVCLFAYGQTGSGKSYRGDSTL-----------NSSVLRPRVLFYPGFSWSH--SGWTGWVSCVVVI---AVDFGCG---  233 (262)
Q Consensus       173 n~~ifaYG~tgSGKTyTm~G~~-----------~~~Giipr~~~~lf~~~~~--~~~~~~vS~~EIy---l~Dll~~---  233 (262)
                      |+||||||+|||||||||+|+.           ..+|||||++++||..++.  ..+.++|||+|||   ++|||..   
T Consensus        82 n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~  161 (352)
T cd01364          82 NCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQNTEYSVKVSYLELYNEELFDLLSSESD  161 (352)
T ss_pred             eEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhccceeEEEEEEEEeeCCeeeeCCCCccc
Confidence            9999999999999999999985           3489999999999988875  6899999999999   9999963   


Q ss_pred             ---Cceeeec--CCCcEEEcCceEEecCChhhhC
Q psy17370        234 ---SWRFESK--PSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       234 ---~l~i~ed--~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                         .++++++  ..++++|.|++++.|.+++|++
T Consensus       162 ~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~  195 (352)
T cd01364         162 LNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGL  195 (352)
T ss_pred             cCccceEEeccCcCCCEEeCCcEEEEeCCHHHHH
Confidence               5899999  5799999999999999999974

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d

>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily

Probab=100.00  E-value=5.9e-38  Score=288.79  Aligned_cols=161  Identities=27%  Similarity=0.383  Sum_probs=144.1

Q ss_pred             CeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEe
Q psy17370         99 RMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLF  177 (262)
Q Consensus        99 ~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~if  177 (262)
                      +|+|+||+||+...|.. +...++.+.+.+..+....   .+.|.||+||+++++|++||+.+++|+|+.+++|+|+|||
T Consensus         2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~---~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~   78 (341)
T cd01372           2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT---DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVL   78 (341)
T ss_pred             CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC---CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCcccee
Confidence            69999999999998876 5566777766655555533   6799999999999999999999999999999999999999


Q ss_pred             eeeccCCCCceecCCCC------CCCchHhhhhhccccccCc----cceEEEEEEEEEE---EEecCC------CCceee
Q psy17370        178 AYGQTGSGKSYRGDSTL------NSSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---AVDFGC------GSWRFE  238 (262)
Q Consensus       178 aYG~tgSGKTyTm~G~~------~~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l~Dll~------~~l~i~  238 (262)
                      |||||||||||||+|+.      .++|||||++++||..++.    .++.|.|||+|||   ++|||.      ..++|+
T Consensus        79 ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~  158 (341)
T cd01372          79 AYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIR  158 (341)
T ss_pred             eecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCceEE
Confidence            99999999999999984      5799999999999998874    4789999999999   999985      358999


Q ss_pred             ecCCCcEEEcCceEEecCChhhhC
Q psy17370        239 SKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       239 ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      ++..++++|.|++++.|.+.+|++
T Consensus       159 e~~~~~~~i~gl~~~~v~s~~e~~  182 (341)
T cd01372         159 EDSKGNIIIVGLTEVTVNSAQEVM  182 (341)
T ss_pred             ECCCCCEecCCCEEEEECCHHHHH
Confidence            999999999999999999999974

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,

>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

Probab=100.00  E-value=2.9e-37  Score=282.95  Aligned_cols=165  Identities=27%  Similarity=0.392  Sum_probs=147.6

Q ss_pred             CCCeEEEEEeCCCCccccCCCcceEEEcCCc-eEEEEcCC-CCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCce
Q psy17370         97 CSRMTVAVRIRPLLVKELHMDVSSIEISPDR-REMKVNDN-AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNV  174 (262)
Q Consensus        97 ~~~IkV~vRiRP~~~~E~~~~~~~i~~~~~~-~~i~~~~~-~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~  174 (262)
                      +|+|+|+||+||+...|......++.+.+.+ ..+.+... .+.+.|.||+||+++++|++||+. +.|+|+.+++|+|+
T Consensus         1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~   79 (329)
T cd01366           1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNV   79 (329)
T ss_pred             CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCce
Confidence            4789999999999998866566677777764 66666554 688999999999999999999998 58999999999999


Q ss_pred             eEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecCCC------Cceeeec
Q psy17370        175 CLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFGCG------SWRFESK  240 (262)
Q Consensus       175 ~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll~~------~l~i~ed  240 (262)
                      ||||||+|||||||||+|...++|||||++++||..++.     ..|.+++||+|||   ++||+..      .++|+++
T Consensus        80 ~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~  159 (329)
T cd01366          80 CIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHD  159 (329)
T ss_pred             EEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEEC
Confidence            999999999999999999999999999999999987753     4788999999999   9999864      5899999


Q ss_pred             CCCcEEEcCceEEecCChhhhC
Q psy17370        241 PSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       241 ~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      ..+++++.|++++.|.+++|++
T Consensus       160 ~~~~~~i~~l~~~~v~s~~e~~  181 (329)
T cd01366         160 SKGETYVTNLTEVPVSSPEEVT  181 (329)
T ss_pred             CCCCEEecCCEEEEeCCHHHHH
Confidence            9999999999999999999974

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi

>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

Probab=100.00  E-value=1.6e-37  Score=285.28  Aligned_cols=159  Identities=27%  Similarity=0.395  Sum_probs=136.0

Q ss_pred             CeEEEEEeCCCCccccCCCcceEEEcCCceEEEE--c---------CCCCceeeeeceeeCCCCCcchhhcccchhhHhh
Q psy17370         99 RMTVAVRIRPLLVKELHMDVSSIEISPDRREMKV--N---------DNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDA  167 (262)
Q Consensus        99 ~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i~~--~---------~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~  167 (262)
                      .|+|+||+||+...+..    .+.+..++..+.+  +         ...+.+.|.||+||++ ++|++||+.++.|+|+.
T Consensus         1 ~i~V~vRvRP~~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~   75 (334)
T cd01375           1 TIQVFVRVRPTPTKQGS----SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDS   75 (334)
T ss_pred             CeEEEEECCCCCCCCCc----cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHH
Confidence            48999999999985422    2344444333222  1         2226788999999999 99999999999999999


Q ss_pred             hhCCCceeEeeeeccCCCCceecCCCC---CCCchHhhhhhccccccCc---cceEEEEEEEEEE---EEecCCCC----
Q psy17370        168 AFNGYNVCLFAYGQTGSGKSYRGDSTL---NSSVLRPRVLFYPGFSWSH---SGWTGWVSCVVVI---AVDFGCGS----  234 (262)
Q Consensus       168 ~l~G~n~~ifaYG~tgSGKTyTm~G~~---~~~Giipr~~~~lf~~~~~---~~~~~~vS~~EIy---l~Dll~~~----  234 (262)
                      +++|+|+||||||+|||||||||+|+.   .++|||||++++||..++.   ..|.|+|||+|||   ++|||...    
T Consensus        76 ~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~  155 (334)
T cd01375          76 ALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEAL  155 (334)
T ss_pred             HhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCcccc
Confidence            999999999999999999999999986   5789999999999998864   4799999999999   99998644    


Q ss_pred             -----ceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370        235 -----WRFESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       235 -----l~i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                           +.|++|..++++|.|++++.|.+++|++
T Consensus       156 ~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~  188 (334)
T cd01375         156 ESLPAVTILEDSEQNIHVKGLSLHSATTEEEAL  188 (334)
T ss_pred             ccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHH
Confidence                 7999999999999999999999999974

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80

>cd00106 KISc Kinesin motor domain

Probab=100.00  E-value=1.4e-36  Score=277.94  Aligned_cols=164  Identities=25%  Similarity=0.374  Sum_probs=146.7

Q ss_pred             CeEEEEEeCCCCccccCCCcceEEEcCCceEEEEcCC----CCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCce
Q psy17370         99 RMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDN----AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNV  174 (262)
Q Consensus        99 ~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i~~~~~----~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~  174 (262)
                      +|+|+||+||+...|..+...+|.+.+++..+.....    ...+.|.||+||+++++|++||+.++.|+|+.+++|+|+
T Consensus         1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~   80 (328)
T cd00106           1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG   80 (328)
T ss_pred             CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence            5899999999998875567788888886544333322    367999999999999999999999999999999999999


Q ss_pred             eEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCcc-----ceEEEEEEEEEE---EEecCCC-----CceeeecC
Q psy17370        175 CLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSHS-----GWTGWVSCVVVI---AVDFGCG-----SWRFESKP  241 (262)
Q Consensus       175 ~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~~-----~~~~~vS~~EIy---l~Dll~~-----~l~i~ed~  241 (262)
                      |||+||++||||||||+|+..++|||||++++||..+.+.     .+.|.+||+|||   ++||+..     .+++++|.
T Consensus        81 ~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~~  160 (328)
T cd00106          81 TIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDP  160 (328)
T ss_pred             eEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEcC
Confidence            9999999999999999999999999999999999988754     589999999999   9999854     58999999


Q ss_pred             CCcEEEcCceEEecCChhhhC
Q psy17370        242 SHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       242 ~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      .+++++.|++++.|.+.+|++
T Consensus       161 ~~~~~v~~l~~~~v~s~~e~~  181 (328)
T cd00106         161 KGGVYVKGLTEVEVGSAEDAL  181 (328)
T ss_pred             CCCEEEeCCEEEEeCCHHHHH
Confidence            999999999999999999974

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil

>KOG0239|consensus

Probab=100.00  E-value=2.1e-37  Score=303.75  Aligned_cols=177  Identities=27%  Similarity=0.395  Sum_probs=146.7

Q ss_pred             cccCCccccccCCCCCCeEEEEEeCCCCccccCC-CcceEEEcCCc-eEEEEcCCC---CceeeeeceeeCCCCCcchhh
Q psy17370         83 MRSSSENCVADNLECSRMTVAVRIRPLLVKELHM-DVSSIEISPDR-REMKVNDNA---KSYTFKLDHCLGQDTDQTSVF  157 (262)
Q Consensus        83 ~~~~~~~~~~~~~~~~~IkV~vRiRP~~~~E~~~-~~~~i~~~~~~-~~i~~~~~~---~~~~f~FD~vf~~~~~q~~vy  157 (262)
                      .+...+|...+.  +|||+|+||+||+...|... ...++...+.. ..+..+...   ..+.|.||+||++.++|++||
T Consensus       301 ~r~kL~N~i~eL--kGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF  378 (670)
T KOG0239|consen  301 ERRKLHNEILEL--KGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVF  378 (670)
T ss_pred             HHHHHHHHHHHh--hcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHH
Confidence            455677777775  89999999999999988773 33344343331 233333332   223599999999999999999


Q ss_pred             cccchhhHhhhhCCCceeEeeeeccCCCCceecCC-CCCCCchHhhhhhccccccCc----cceEEEEEEEEEE---EEe
Q psy17370        158 TIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDS-TLNSSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---AVD  229 (262)
Q Consensus       158 ~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G-~~~~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l~D  229 (262)
                      +++. |+|..+|+|||+||||||||||||||||.| .++++|||||++++||..+..    -.|.+.++++|||   |+|
T Consensus       379 ~e~~-~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~D  457 (670)
T KOG0239|consen  379 EEVS-PLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRD  457 (670)
T ss_pred             HHHH-HHHHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHH
Confidence            9955 999999999999999999999999999999 689999999999999987764    3788899999999   999


Q ss_pred             cCC-----CCceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370        230 FGC-----GSWRFESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       230 ll~-----~~l~i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      ||.     ..+.|+++.++.++|.+++..+|.+.+|++
T Consensus       458 lL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~  495 (670)
T KOG0239|consen  458 LLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVD  495 (670)
T ss_pred             hccccccccceeEEEcCCCceecccceEEecCCHHHHH
Confidence            884     467999999999999999999999998873

>smart00129 KISc Kinesin motor, catalytic domain

Probab=100.00  E-value=1.2e-35  Score=272.76  Aligned_cols=164  Identities=29%  Similarity=0.419  Sum_probs=146.5

Q ss_pred             CeEEEEEeCCCCccccC-CCcceEEEcCCc-eEEEEcC---CCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCc
Q psy17370         99 RMTVAVRIRPLLVKELH-MDVSSIEISPDR-REMKVND---NAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYN  173 (262)
Q Consensus        99 ~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~-~~i~~~~---~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n  173 (262)
                      +|+|+||+||+...|.. +..+++.+.++. ..+.+..   ....+.|.||+||+++++|++||+.++.|+|+.+++|+|
T Consensus         1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~   80 (335)
T smart00129        1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN   80 (335)
T ss_pred             CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence            58999999999999876 677788886653 3444332   237799999999999999999999999999999999999


Q ss_pred             eeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc----cceEEEEEEEEEE---EEecCC---CCceeeecCCC
Q psy17370        174 VCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---AVDFGC---GSWRFESKPSH  243 (262)
Q Consensus       174 ~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l~Dll~---~~l~i~ed~~~  243 (262)
                      +|||+||++||||||||+|+..++|||||++++||..+.+    ..+.|+|||+|||   ++||+.   ..++|+++..+
T Consensus        81 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~~  160 (335)
T smart00129       81 ATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKKG  160 (335)
T ss_pred             eeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCCC
Confidence            9999999999999999999999999999999999998865    3799999999999   999984   67899999999


Q ss_pred             cEEEcCceEEecCChhhhC
Q psy17370        244 EIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       244 ~v~v~gl~~~~V~s~~e~l  262 (262)
                      ++++.|++++.|.|++|++
T Consensus       161 ~~~i~~l~~~~v~s~~e~~  179 (335)
T smart00129      161 GVYVKGLTEISVSSFEEVY  179 (335)
T ss_pred             CEEecCCEEEEeCCHHHHH
Confidence            9999999999999999874

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.

>KOG0246|consensus

Probab=100.00  E-value=6e-36  Score=280.08  Aligned_cols=170  Identities=22%  Similarity=0.278  Sum_probs=149.6

Q ss_pred             cCCCCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEE--------cCCCCceeeeeceeeCCCCCcchhhcccchh
Q psy17370         93 DNLECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKV--------NDNAKSYTFKLDHCLGQDTDQTSVFTIIAQP  163 (262)
Q Consensus        93 ~~~~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~--------~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~p  163 (262)
                      +....+.|.||||.||++..|.. .+..+|.+..+...+..        ...-+++.|.||++||+.+++++||.-+++|
T Consensus       203 ~~v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~P  282 (676)
T KOG0246|consen  203 DGVNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKP  282 (676)
T ss_pred             CCCccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhH
Confidence            45567899999999999999987 66667777544443332        2233899999999999999999999999999


Q ss_pred             hHhhhhCCCceeEeeeeccCCCCceecCCCC------CCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEe
Q psy17370        164 LLDAAFNGYNVCLFAYGQTGSGKSYRGDSTL------NSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVD  229 (262)
Q Consensus       164 lv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~------~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~D  229 (262)
                      ||+.+|+|.-+||||||||||||||||.|+.      ...||.-++.+|+|..+..     .++.++++|||||   +||
T Consensus       283 lV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfD  362 (676)
T KOG0246|consen  283 LVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYD  362 (676)
T ss_pred             HHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhh
Confidence            9999999999999999999999999999986      5679999999999988875     4888999999999   999


Q ss_pred             cCC--CCceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370        230 FGC--GSWRFESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       230 ll~--~~l~i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      ||+  .+|.++||.+..|.|.||+|..|.+.+|+|
T Consensus       363 LL~~k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl  397 (676)
T KOG0246|consen  363 LLNDKKKLRVLEDGNQQVQVVGLQEEEVSGVEEVL  397 (676)
T ss_pred             hhccccceEEeecCCceEEEeeceeeeccCHHHHH
Confidence            996  688899999999999999999999999986

>KOG0241|consensus

Probab=100.00  E-value=1.8e-36  Score=294.38  Aligned_cols=166  Identities=27%  Similarity=0.415  Sum_probs=151.0

Q ss_pred             CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCC-------CceeeeeceeeC-------CCCCcchhhccc
Q psy17370         96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNA-------KSYTFKLDHCLG-------QDTDQTSVFTII  160 (262)
Q Consensus        96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~-------~~~~f~FD~vf~-------~~~~q~~vy~~~  160 (262)
                      .+.+|||.||+||++.+|.. ..+|++.++..++++..++..       ..++|.||++|.       ..+.|+.||+..
T Consensus         2 s~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~l   81 (1714)
T KOG0241|consen    2 SDAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCL   81 (1714)
T ss_pred             CCcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhc
Confidence            46789999999999999998 888999999999888776433       678999999993       347899999999


Q ss_pred             chhhHhhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecC-
Q psy17370        161 AQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFG-  231 (262)
Q Consensus       161 ~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll-  231 (262)
                      ...+|+.+|+|||+||||||||||||||||+|..+++|||||.++.||..+.+     ..|+|.|||+|||   ++||| 
T Consensus        82 G~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLd  161 (1714)
T KOG0241|consen   82 GEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLD  161 (1714)
T ss_pred             chHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhC
Confidence            99999999999999999999999999999999999999999999999999874     4899999999999   77776 


Q ss_pred             ----CCCceeeecCCCcEEEcCceEEecCChhhh
Q psy17370        232 ----CGSWRFESKPSHEIYLSVSVLTDITKFIEV  261 (262)
Q Consensus       232 ----~~~l~i~ed~~~~v~v~gl~~~~V~s~~e~  261 (262)
                          +..|+++++.-.|.|++||++..|.|.+|+
T Consensus       162 Pk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdI  195 (1714)
T KOG0241|consen  162 PKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDI  195 (1714)
T ss_pred             CCCCcceeEEeecccccccccchhhhhcccHHHH
Confidence                467899999999999999999999999874

>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=100.00  E-value=5.6e-35  Score=268.12  Aligned_cols=158  Identities=25%  Similarity=0.387  Sum_probs=134.1

Q ss_pred             EeCCCCccccC-CCcceEEEcCCce--EEEE---cCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEee
Q psy17370        105 RIRPLLVKELH-MDVSSIEISPDRR--EMKV---NDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFA  178 (262)
Q Consensus       105 RiRP~~~~E~~-~~~~~i~~~~~~~--~i~~---~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifa  178 (262)
                      |+||++..|.. .....+.+.....  ....   ........|.||+||+++++|++||+.++.|+|+.+|+|+|+||||
T Consensus         1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a   80 (335)
T PF00225_consen    1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA   80 (335)
T ss_dssp             EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred             CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence            89999999987 5555555542111  1111   1223789999999999999999999999999999999999999999


Q ss_pred             eeccCCCCceecCCC--CCCCchHhhhhhccccccCc------cceEEEEEEEEEE---EEecCCCC-------ceeeec
Q psy17370        179 YGQTGSGKSYRGDST--LNSSVLRPRVLFYPGFSWSH------SGWTGWVSCVVVI---AVDFGCGS-------WRFESK  240 (262)
Q Consensus       179 YG~tgSGKTyTm~G~--~~~~Giipr~~~~lf~~~~~------~~~~~~vS~~EIy---l~Dll~~~-------l~i~ed  240 (262)
                      ||+|||||||||+|+  ..++|||||++++||..++.      ..+.|+|||+|||   ++|||...       ++|++|
T Consensus        81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~  160 (335)
T PF00225_consen   81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED  160 (335)
T ss_dssp             EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred             eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence            999999999999999  89999999999999998875      3689999999999   99999754       899999


Q ss_pred             CCCc-EEEcCceEEecCChhhhC
Q psy17370        241 PSHE-IYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       241 ~~~~-v~v~gl~~~~V~s~~e~l  262 (262)
                      ...| +++.|++++.|.+.+|++
T Consensus       161 ~~~g~~~i~~l~~~~v~s~~~~~  183 (335)
T PF00225_consen  161 SNKGSVYIKGLTEVEVKSAEEAL  183 (335)
T ss_dssp             TTTEEEEETTSEEEEESSHHHHH
T ss_pred             cccccceeecccccccccccccc
Confidence            9866 999999999999999874

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....

>KOG0247|consensus

Probab=99.97  E-value=2.4e-32  Score=262.09  Aligned_cols=164  Identities=22%  Similarity=0.281  Sum_probs=141.3

Q ss_pred             CCCeEEEEEeCCCCccccCCCcceEEEcCCceEEEEcC-----------CCCceeeeeceeeCCCCCcchhhcccchhhH
Q psy17370         97 CSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVND-----------NAKSYTFKLDHCLGQDTDQTSVFTIIAQPLL  165 (262)
Q Consensus        97 ~~~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i~~~~-----------~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv  165 (262)
                      ...|.|+||+||+...  .++..++.+.++.+.+...+           ..-.+.|.|.+||+++++|.+||+.++.|+|
T Consensus        30 ~d~v~v~~rvrP~~~~--~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV  107 (809)
T KOG0247|consen   30 KDPVLVVCRVRPLSDA--SEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPLV  107 (809)
T ss_pred             hcchheeEeecCCCCC--ccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHHH
Confidence            5689999999999852  24566777777666655522           2256889999999999999999999999999


Q ss_pred             hhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc--------------------------------
Q psy17370        166 DAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH--------------------------------  213 (262)
Q Consensus       166 ~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~--------------------------------  213 (262)
                      .++|.|.|..+|.||.|||||||||+|++.++||+||+|+.||..+.+                                
T Consensus       108 ~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~  187 (809)
T KOG0247|consen  108 KDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREA  187 (809)
T ss_pred             HHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhhh
Confidence            999999999999999999999999999999999999999999876442                                


Q ss_pred             ------------------------------------cceEEEEEEEEEE---EEecCCCC---------ceeeecCCCcE
Q psy17370        214 ------------------------------------SGWTGWVSCVVVI---AVDFGCGS---------WRFESKPSHEI  245 (262)
Q Consensus       214 ------------------------------------~~~~~~vS~~EIy---l~Dll~~~---------l~i~ed~~~~v  245 (262)
                                                          ..|.|||||+|||   |||||-+.         ..+++|.++.+
T Consensus       188 ~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~  267 (809)
T KOG0247|consen  188 MLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNGNM  267 (809)
T ss_pred             ccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCCCe
Confidence                                                1478999999999   99998422         57789999999


Q ss_pred             EEcCceEEecCChhhhC
Q psy17370        246 YLSVSVLTDITKFIEVY  262 (262)
Q Consensus       246 ~v~gl~~~~V~s~~e~l  262 (262)
                      ||.|++++.|.+.+|+|
T Consensus       268 ~Vkgl~~V~VssseEA~  284 (809)
T KOG0247|consen  268 YVKGLTEVEVSSSEEAL  284 (809)
T ss_pred             eeccccEEEeccHHHHH
Confidence            99999999999999975

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]

Probab=99.94  E-value=9.8e-28  Score=233.57  Aligned_cols=159  Identities=21%  Similarity=0.296  Sum_probs=133.6

Q ss_pred             CCCeEEEEEeCCCCccccCCCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeE
Q psy17370         97 CSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCL  176 (262)
Q Consensus        97 ~~~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~i  176 (262)
                      -..++++++..|-...+      .+....+...+..... ....|.||+||++.++|++||+..++++++.++.||||||
T Consensus        21 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~Tv   93 (568)
T COG5059          21 VSDIKSTIRIIPGELGE------RLINTSKKSHVSLEKS-KEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTV   93 (568)
T ss_pred             ecCceEEEeecCCCcch------heeecccccccccccc-cceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceE
Confidence            46789999999976542      1222222222222211 2678999999999999999999999999999999999999


Q ss_pred             eeeeccCCCCceecCCCCCCCchHhhhhhccccccCc----cceEEEEEEEEEE---EEecCCCCc---eeeecCCCcEE
Q psy17370        177 FAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---AVDFGCGSW---RFESKPSHEIY  246 (262)
Q Consensus       177 faYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l~Dll~~~l---~i~ed~~~~v~  246 (262)
                      |||||||+||||||.|...++||||+++.+||..+++    ..+.+.+||+|||   ++||+..+.   .+++|..++|+
T Consensus        94 fayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v~  173 (568)
T COG5059          94 FAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVK  173 (568)
T ss_pred             EEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccccccccccCCCceE
Confidence            9999999999999999999999999999999998875    4799999999999   999885443   48899999999


Q ss_pred             EcCceEEecCChhhhC
Q psy17370        247 LSVSVLTDITKFIEVY  262 (262)
Q Consensus       247 v~gl~~~~V~s~~e~l  262 (262)
                      +.|+++..+.+.+|+|
T Consensus       174 v~~l~~~~~~s~ee~l  189 (568)
T COG5059         174 VAGLTEKHVSSKEEIL  189 (568)
T ss_pred             eecceEEecCChHHHH
Confidence            9999999999999875

>KOG0244|consensus

Probab=99.89  E-value=1e-24  Score=214.78  Aligned_cols=152  Identities=24%  Similarity=0.315  Sum_probs=132.7

Q ss_pred             eCCCCccccC-CCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCC
Q psy17370        106 IRPLLVKELH-MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGS  184 (262)
Q Consensus       106 iRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgS  184 (262)
                      +||+...|.. ++..|+.+.+...+|.+.   ....|+||+||+....|.++|+.++.+|++.+|+|||++++|||||||
T Consensus         1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig---~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgs   77 (913)
T KOG0244|consen    1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG---KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGS   77 (913)
T ss_pred             CCCccchHHHhcchhhcccCCCCCceeec---CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCC
Confidence            6899988877 777777766666666554   578999999999999999999999999999999999999999999999


Q ss_pred             CCceecCCCC----CCCchHhhhhhccccccCc---cceEEEEEEEEEE---EEecCC-----CCceeeecCCCcEEEcC
Q psy17370        185 GKSYRGDSTL----NSSVLRPRVLFYPGFSWSH---SGWTGWVSCVVVI---AVDFGC-----GSWRFESKPSHEIYLSV  249 (262)
Q Consensus       185 GKTyTm~G~~----~~~Giipr~~~~lf~~~~~---~~~~~~vS~~EIy---l~Dll~-----~~l~i~ed~~~~v~v~g  249 (262)
                      ||||||.+..    ...|+|||+++.||.++.+   ..+.|.|+|+|||   ++||++     .++++++ +++++.+.|
T Consensus        78 gkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~it~~g  156 (913)
T KOG0244|consen   78 GKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGEITIRG  156 (913)
T ss_pred             CceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCceEEEe
Confidence            9999998883    4469999999999998865   4689999999999   888885     5578888 788999999


Q ss_pred             ceEEecCChhhh
Q psy17370        250 SVLTDITKFIEV  261 (262)
Q Consensus       250 l~~~~V~s~~e~  261 (262)
                      +++..|....++
T Consensus       157 lte~tv~~~~q~  168 (913)
T KOG0244|consen  157 LTEKTVRMKLQL  168 (913)
T ss_pred             ehHHHHHHHHHH
Confidence            999998877765

>cd01363 Motor_domain Myosin and Kinesin motor domain

Probab=99.71  E-value=2.9e-18  Score=145.26  Aligned_cols=53  Identities=45%  Similarity=0.768  Sum_probs=50.5

Q ss_pred             hhcccchhhHhhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhcccc
Q psy17370        156 VFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGF  209 (262)
Q Consensus       156 vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~  209 (262)
                      ||+.++ |+|+.+++|+|+|||+||||||||||||+|+..+.||||+++++++.
T Consensus         8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~~~~   60 (186)
T cd01363           8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTDVID   60 (186)
T ss_pred             HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHHHHH
Confidence            999999 99999999999999999999999999999999999999999997633

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

Probab=95.67  E-value=0.014  Score=56.57  Aligned_cols=83  Identities=20%  Similarity=0.178  Sum_probs=51.1

Q ss_pred             eeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecCC------CC-----CCCchHhhhhhcc
Q psy17370        139 YTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDS------TL-----NSSVLRPRVLFYP  207 (262)
Q Consensus       139 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G------~~-----~~~Giipr~~~~l  207 (262)
                      ..|....-|.|.-+|-.    .+..|++.+-+|..--+ -.|.|||||||||--      -+     .+.-+--....++
T Consensus         3 ~~F~l~s~f~PaGDQP~----AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Ef   77 (663)
T COG0556           3 KPFKLHSPFKPAGDQPE----AIAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEF   77 (663)
T ss_pred             CceEeccCCCCCCCcHH----HHHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHH
Confidence            35777777888888865    34566777666654333 359999999999931      11     1222222222221


Q ss_pred             ccccCccceEEEEEEEEEE
Q psy17370        208 GFSWSHSGWTGWVSCVVVI  226 (262)
Q Consensus       208 f~~~~~~~~~~~vS~~EIy  226 (262)
                      -.-+-+..+++.|||+..|
T Consensus        78 k~fFP~NaVEYFVSYYDYY   96 (663)
T COG0556          78 KEFFPENAVEYFVSYYDYY   96 (663)
T ss_pred             HHhCcCcceEEEeeecccc
Confidence            1112357888999999888

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=94.97  E-value=0.0091  Score=51.80  Aligned_cols=50  Identities=22%  Similarity=0.381  Sum_probs=30.3

Q ss_pred             eeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370        139 YTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       139 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      ..|+||.-+. ...++..|.. +..+.+.--..+| .+|-||.+|+||||-|.
T Consensus         3 ~~~tFdnfv~-g~~N~~a~~~-~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~   52 (219)
T PF00308_consen    3 PKYTFDNFVV-GESNELAYAA-AKAIAENPGERYN-PLFLYGPSGLGKTHLLQ   52 (219)
T ss_dssp             TT-SCCCS---TTTTHHHHHH-HHHHHHSTTTSSS-EEEEEESTTSSHHHHHH
T ss_pred             CCCccccCCc-CCcHHHHHHH-HHHHHhcCCCCCC-ceEEECCCCCCHHHHHH
Confidence            4689998663 3456666654 3244444222234 47889999999999663

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=93.20  E-value=0.039  Score=50.25  Aligned_cols=30  Identities=27%  Similarity=0.300  Sum_probs=26.7

Q ss_pred             chhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370        161 AQPLLDAAFNGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       161 ~~plv~~~l~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      +-+++..+++-.++.|+.-|+|||||+.||
T Consensus       113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTl  142 (353)
T COG2805         113 LPPIVRELAESPRGLILVTGPTGSGKSTTL  142 (353)
T ss_pred             CCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence            346677888999999999999999999998

>PRK06893 DNA replication initiation factor; Validated

Probab=93.10  E-value=0.046  Score=47.62  Aligned_cols=48  Identities=17%  Similarity=0.133  Sum_probs=30.9

Q ss_pred             ceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370        138 SYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       138 ~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      ...++||..+... ++..     +.-+...+-+++|..++-||.+|+||||-+.
T Consensus        10 ~~~~~fd~f~~~~-~~~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~   57 (229)
T PRK06893         10 IDDETLDNFYADN-NLLL-----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLK   57 (229)
T ss_pred             CCcccccccccCC-hHHH-----HHHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence            4567888888543 2211     1122223334677788999999999999774

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=92.55  E-value=0.048  Score=52.66  Aligned_cols=32  Identities=25%  Similarity=0.168  Sum_probs=27.2

Q ss_pred             chhhHhhhhCCCceeEeeeeccCCCCceecCC
Q psy17370        161 AQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDS  192 (262)
Q Consensus       161 ~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G  192 (262)
                      -...+..+++.-++.|+.-|+||||||.||+.
T Consensus       246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~  277 (500)
T COG2804         246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLYA  277 (500)
T ss_pred             HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence            34566778889999999999999999999963

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=91.96  E-value=0.055  Score=53.79  Aligned_cols=52  Identities=23%  Similarity=0.339  Sum_probs=34.5

Q ss_pred             CceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370        137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      -+..|+||..+-. .+++..|.. +..+++..-.++|. ||-||.+|+||||-+.
T Consensus       281 L~~~~TFDnFvvG-~sN~~A~aa-a~avae~~~~~~Np-L~LyG~sGsGKTHLL~  332 (617)
T PRK14086        281 LNPKYTFDTFVIG-ASNRFAHAA-AVAVAEAPAKAYNP-LFIYGESGLGKTHLLH  332 (617)
T ss_pred             CCCCCCHhhhcCC-CccHHHHHH-HHHHHhCccccCCc-EEEECCCCCCHHHHHH
Confidence            4567899886633 345555533 33555543345675 8999999999999874

>PRK09087 hypothetical protein; Validated

Probab=91.88  E-value=0.075  Score=46.31  Aligned_cols=49  Identities=18%  Similarity=0.185  Sum_probs=31.7

Q ss_pred             CceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370        137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      ....|+||.-+.. ..+..+|..     +.....-.+..++=||.+||||||-+.
T Consensus        14 ~~~~~~~~~Fi~~-~~N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~   62 (226)
T PRK09087         14 HDPAYGRDDLLVT-ESNRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS   62 (226)
T ss_pred             CCCCCChhceeec-CchHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence            4556788887743 334446663     333222235558899999999999885

>PRK06620 hypothetical protein; Validated

Probab=91.73  E-value=0.059  Score=46.58  Aligned_cols=52  Identities=23%  Similarity=0.349  Sum_probs=33.4

Q ss_pred             CceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCc---eeEeeeeccCCCCceecCC
Q psy17370        137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYN---VCLFAYGQTGSGKSYRGDS  192 (262)
Q Consensus       137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n---~~ifaYG~tgSGKTyTm~G  192 (262)
                      .+..|+||..+ ...+|...|.... .+.+.  -|+|   -.++=||+.|+||||-+..
T Consensus         9 ~~~~~tfd~Fv-vg~~N~~a~~~~~-~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~a   63 (214)
T PRK06620          9 TSSKYHPDEFI-VSSSNDQAYNIIK-NWQCG--FGVNPYKFTLLIKGPSSSGKTYLTKI   63 (214)
T ss_pred             CCCCCCchhhE-ecccHHHHHHHHH-HHHHc--cccCCCcceEEEECCCCCCHHHHHHH
Confidence            45578899877 3344555665543 22221  1333   3589999999999998853

>PRK05642 DNA replication initiation factor; Validated

Probab=90.94  E-value=0.099  Score=45.69  Aligned_cols=48  Identities=10%  Similarity=0.153  Sum_probs=29.0

Q ss_pred             CceeeeeceeeCCCCCcchhhcccchhhHhhhhCC----CceeEeeeeccCCCCceecC
Q psy17370        137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNG----YNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G----~n~~ifaYG~tgSGKTyTm~  191 (262)
                      -+..|+||.-+...  +..     +...++...++    .+..++-||.+|+||||-+.
T Consensus        12 ~~~~~tfdnF~~~~--~~~-----a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~   63 (234)
T PRK05642         12 LRDDATFANYYPGA--NAA-----ALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQ   63 (234)
T ss_pred             CCCcccccccCcCC--hHH-----HHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence            34568888877331  222     33444433222    12467889999999999764

>PRK06526 transposase; Provisional

Probab=90.04  E-value=0.13  Score=45.65  Aligned_cols=40  Identities=13%  Similarity=0.172  Sum_probs=23.9

Q ss_pred             eCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370        147 LGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       147 f~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      +.+...+..+..-.....++   .+.|  |+-||++|+||||.+.
T Consensus        77 ~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~  116 (254)
T PRK06526         77 HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAI  116 (254)
T ss_pred             cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHH
Confidence            33444444444333333332   3444  6889999999999875

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=89.91  E-value=0.11  Score=49.92  Aligned_cols=51  Identities=18%  Similarity=0.286  Sum_probs=34.1

Q ss_pred             CceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370        137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      -+..|+||.-.. ...+...|..+. .+.+. -..+|. +|-||.+|+||||-|.
T Consensus        98 l~~~~tFdnFv~-g~~n~~a~~~~~-~~~~~-~~~~n~-l~lyG~~G~GKTHLl~  148 (440)
T PRK14088         98 LNPDYTFENFVV-GPGNSFAYHAAL-EVAKN-PGRYNP-LFIYGGVGLGKTHLLQ  148 (440)
T ss_pred             CCCCCccccccc-CCchHHHHHHHH-HHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence            466799998774 345666666533 33332 112564 9999999999999884

>PRK08084 DNA replication initiation factor; Provisional

Probab=89.10  E-value=0.17  Score=44.21  Aligned_cols=49  Identities=12%  Similarity=0.161  Sum_probs=30.5

Q ss_pred             CceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370        137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      ....|+||.-+..  .|...+.... .+..   ......++-||+.|+||||-+.
T Consensus        15 ~~~~~~fd~f~~~--~n~~a~~~l~-~~~~---~~~~~~l~l~Gp~G~GKThLl~   63 (235)
T PRK08084         15 LPDDETFASFYPG--DNDSLLAALQ-NALR---QEHSGYIYLWSREGAGRSHLLH   63 (235)
T ss_pred             CCCcCCccccccC--ccHHHHHHHH-HHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence            3456788865533  5666554322 2221   2222468999999999999884

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3

Probab=88.73  E-value=0.16  Score=41.24  Aligned_cols=19  Identities=26%  Similarity=0.251  Sum_probs=14.9

Q ss_pred             ceeEeeeeccCCCCceecC
Q psy17370        173 NVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       173 n~~ifaYG~tgSGKTyTm~  191 (262)
                      ...++..+.||||||++|.
T Consensus        25 ~~~~ll~~~tGsGKT~~~~   43 (184)
T PF04851_consen   25 ERRVLLNAPTGSGKTIIAL   43 (184)
T ss_dssp             CSEEEEEESTTSSHHHHHH
T ss_pred             CCCEEEEECCCCCcChhhh
Confidence            3445556799999999996

1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=88.68  E-value=0.16  Score=48.84  Aligned_cols=49  Identities=22%  Similarity=0.320  Sum_probs=31.0

Q ss_pred             eeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370        140 TFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       140 ~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      .|+||.-... .+++..|.. ++.+++.-=..+| -+|-||.+|+||||-|.
T Consensus       111 ~~tFdnFv~g-~~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~  159 (450)
T PRK14087        111 ENTFENFVIG-SSNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLK  159 (450)
T ss_pred             ccchhcccCC-CcHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence            5899986633 355666643 3344332111234 47899999999999884

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=88.43  E-value=0.19  Score=46.29  Aligned_cols=49  Identities=20%  Similarity=0.287  Sum_probs=30.8

Q ss_pred             eeeceeeCCCCCcchhhcccchhhHhhhhC-CCceeEeeeeccCCCCceec
Q psy17370        141 FKLDHCLGQDTDQTSVFTIIAQPLLDAAFN-GYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       141 f~FD~vf~~~~~q~~vy~~~~~plv~~~l~-G~n~~ifaYG~tgSGKTyTm  190 (262)
                      |.-|++...-...++-++.+. ..+..+++ +....++-||+.|+|||+++
T Consensus         8 l~~~~~p~~l~gRe~e~~~l~-~~l~~~~~~~~~~~i~I~G~~GtGKT~l~   57 (365)
T TIGR02928         8 LEPDYVPDRIVHRDEQIEELA-KALRPILRGSRPSNVFIYGKTGTGKTAVT   57 (365)
T ss_pred             CCCCCCCCCCCCcHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence            334444444455555555544 33444454 44567899999999999987

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PRK12377 putative replication protein; Provisional

Probab=88.18  E-value=0.21  Score=44.26  Aligned_cols=49  Identities=18%  Similarity=0.278  Sum_probs=32.4

Q ss_pred             eeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370        141 FKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       141 f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      .+||.-......|..++.. +..+++.+..+. ..++-||.+|+||||.+.
T Consensus        71 ~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~  119 (248)
T PRK12377         71 CSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAA  119 (248)
T ss_pred             CCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHH
Confidence            3566654444556666654 445666665554 457788999999999874

>PRK08116 hypothetical protein; Validated

Probab=87.76  E-value=0.18  Score=45.17  Aligned_cols=53  Identities=25%  Similarity=0.375  Sum_probs=34.4

Q ss_pred             CceeeeeceeeCCCCCcchhhcccchhhHhhhhC--CCceeEeeeeccCCCCceecC
Q psy17370        137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFN--GYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~--G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      .-..++||.-. ....+...|.. +...++.+.+  ..+..++-||.+|+||||-+.
T Consensus        78 ~~~~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~  132 (268)
T PRK08116         78 KFRNSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA  132 (268)
T ss_pred             HHHhcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence            34456777644 34555555554 4455665543  334568899999999999874

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=87.75  E-value=0.2  Score=47.33  Aligned_cols=52  Identities=21%  Similarity=0.293  Sum_probs=31.3

Q ss_pred             CceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370        137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      -+..|+||.-.- ...+...|.. ++.+.+..-..+| .++-||.+|+||||-+.
T Consensus       103 l~~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~  154 (405)
T TIGR00362       103 LNPKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLH  154 (405)
T ss_pred             CCCCCccccccc-CCcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence            446788888442 3455555544 2233333111234 47789999999999874

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=87.17  E-value=0.23  Score=47.65  Aligned_cols=52  Identities=19%  Similarity=0.273  Sum_probs=31.6

Q ss_pred             CceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370        137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      -...|+||.-.. ...+...|..+ +.+.+.--..+| .++-||.+|+||||.+.
T Consensus       115 l~~~~tfd~fv~-g~~n~~a~~~~-~~~~~~~~~~~~-~l~l~G~~G~GKThL~~  166 (450)
T PRK00149        115 LNPKYTFDNFVV-GKSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLH  166 (450)
T ss_pred             CCCCCccccccc-CCCcHHHHHHH-HHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence            456788887442 33555555542 233332212334 47889999999999883

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=87.11  E-value=0.27  Score=45.79  Aligned_cols=46  Identities=20%  Similarity=0.239  Sum_probs=27.2

Q ss_pred             ceeeCCCCCcchhhcccchhhHhhhhC-CCceeEeeeeccCCCCceec
Q psy17370        144 DHCLGQDTDQTSVFTIIAQPLLDAAFN-GYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       144 D~vf~~~~~q~~vy~~~~~plv~~~l~-G~n~~ifaYG~tgSGKTyTm  190 (262)
                      +.+.+.-...++-++... ..+...++ +....++-||+.|+|||+++
T Consensus        26 ~~~P~~l~~Re~e~~~l~-~~l~~~~~~~~~~~~lI~G~~GtGKT~l~   72 (394)
T PRK00411         26 DYVPENLPHREEQIEELA-FALRPALRGSRPLNVLIYGPPGTGKTTTV   72 (394)
T ss_pred             CCcCCCCCCHHHHHHHHH-HHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence            333333334444444433 33334443 44456889999999999987

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=86.56  E-value=0.29  Score=37.49  Aligned_cols=19  Identities=32%  Similarity=0.482  Sum_probs=15.5

Q ss_pred             CceeEeeeeccCCCCceec
Q psy17370        172 YNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       172 ~n~~ifaYG~tgSGKTyTm  190 (262)
                      ....++-+|.+|+|||+.+
T Consensus        18 ~~~~v~i~G~~G~GKT~l~   36 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLA   36 (151)
T ss_pred             CCCeEEEECCCCCCHHHHH
Confidence            3446788999999999866

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown

Probab=86.15  E-value=0.24  Score=42.63  Aligned_cols=15  Identities=47%  Similarity=0.663  Sum_probs=12.8

Q ss_pred             EeeeeccCCCCceec
Q psy17370        176 LFAYGQTGSGKSYRG  190 (262)
Q Consensus       176 ifaYG~tgSGKTyTm  190 (262)
                      +.-+|.||||||+|+
T Consensus        26 ~~I~G~TGsGKS~~~   40 (229)
T PF01935_consen   26 IAIFGTTGSGKSNTV   40 (229)
T ss_pred             EEEECCCCCCHHHHH
Confidence            345799999999998

It contains several conserved aspartates and histidines that could be metal ligands.

>PRK07952 DNA replication protein DnaC; Validated

Probab=85.97  E-value=0.34  Score=42.80  Aligned_cols=50  Identities=10%  Similarity=0.154  Sum_probs=30.4

Q ss_pred             eeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370        140 TFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       140 ~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      ..+||.-......|..++..+ ...++.+..+. ..++-||.+|+||||.+.
T Consensus        68 ~~tFdnf~~~~~~q~~al~~a-~~~~~~~~~~~-~~~~l~G~~GtGKThLa~  117 (244)
T PRK07952         68 NCSFENYRVECEGQMNALSKA-RQYVEEFDGNI-ASFIFSGKPGTGKNHLAA  117 (244)
T ss_pred             CCccccccCCCchHHHHHHHH-HHHHHhhccCC-ceEEEECCCCCCHHHHHH
Confidence            456665443334455555543 34444443443 367889999999999874

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=85.96  E-value=0.26  Score=37.31  Aligned_cols=17  Identities=29%  Similarity=0.337  Sum_probs=14.1

Q ss_pred             EeeeeccCCCCceecCC
Q psy17370        176 LFAYGQTGSGKSYRGDS  192 (262)
Q Consensus       176 ifaYG~tgSGKTyTm~G  192 (262)
                      ++.+|.+|+|||+++..
T Consensus         3 ~~i~~~~G~GKT~~~~~   19 (144)
T cd00046           3 VLLAAPTGSGKTLAALL   19 (144)
T ss_pred             EEEECCCCCchhHHHHH
Confidence            45689999999998854

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=85.68  E-value=0.36  Score=41.50  Aligned_cols=49  Identities=14%  Similarity=0.219  Sum_probs=28.6

Q ss_pred             CceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370        137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      ....|+||..+..  .++.+... +..++..  ...+..++-||..|+||||-+
T Consensus        11 ~~~~~~~d~f~~~--~~~~~~~~-l~~~~~~--~~~~~~~~l~G~~G~GKT~La   59 (227)
T PRK08903         11 PPPPPTFDNFVAG--ENAELVAR-LRELAAG--PVADRFFYLWGEAGSGRSHLL   59 (227)
T ss_pred             CCChhhhcccccC--CcHHHHHH-HHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence            3445888887722  22233221 2232221  133457889999999999976

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=85.26  E-value=0.34  Score=47.14  Aligned_cols=28  Identities=21%  Similarity=0.209  Sum_probs=22.7

Q ss_pred             hHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370        164 LLDAAFNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       164 lv~~~l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      .+..++...++.|+-.|+||||||.||.
T Consensus       233 ~l~~~~~~~~GlilitGptGSGKTTtL~  260 (486)
T TIGR02533       233 RFERLIRRPHGIILVTGPTGSGKTTTLY  260 (486)
T ss_pred             HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence            4455667777888899999999999994

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases

Probab=85.20  E-value=0.38  Score=38.67  Aligned_cols=27  Identities=30%  Similarity=0.386  Sum_probs=20.0

Q ss_pred             hhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370        163 PLLDAAFNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       163 plv~~~l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      .++..+++|.+  ++..|+||+|||....
T Consensus         6 ~~~~~i~~~~~--~li~aptGsGKT~~~~   32 (169)
T PF00270_consen    6 EAIEAIISGKN--VLISAPTGSGKTLAYI   32 (169)
T ss_dssp             HHHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred             HHHHHHHcCCC--EEEECCCCCccHHHHH
Confidence            34555666777  6678899999999764

Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB

Probab=85.04  E-value=0.3  Score=48.37  Aligned_cols=28  Identities=29%  Similarity=0.256  Sum_probs=23.2

Q ss_pred             hHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370        164 LLDAAFNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       164 lv~~~l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      .+..++..-++.|+-.|.||||||.||.
T Consensus       307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~  334 (564)
T TIGR02538       307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY  334 (564)
T ss_pred             HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence            4556667778899999999999999984

This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.

>PRK08181 transposase; Validated

Probab=84.89  E-value=0.49  Score=42.43  Aligned_cols=20  Identities=40%  Similarity=0.670  Sum_probs=16.1

Q ss_pred             CCCceeEeeeeccCCCCceecC
Q psy17370        170 NGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       170 ~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      .|.|  ++-||++|+||||-+.
T Consensus       105 ~~~n--lll~Gp~GtGKTHLa~  124 (269)
T PRK08181        105 KGAN--LLLFGPPGGGKSHLAA  124 (269)
T ss_pred             cCce--EEEEecCCCcHHHHHH
Confidence            3554  7889999999999774

>PRK10436 hypothetical protein; Provisional

Probab=84.78  E-value=0.33  Score=46.93  Aligned_cols=28  Identities=25%  Similarity=0.243  Sum_probs=23.1

Q ss_pred             hHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370        164 LLDAAFNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       164 lv~~~l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      .+..++..-++.|+.-|+||||||.||.
T Consensus       209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~  236 (462)
T PRK10436        209 QFRQALQQPQGLILVTGPTGSGKTVTLY  236 (462)
T ss_pred             HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence            3455666778899999999999999994

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=84.25  E-value=0.32  Score=37.55  Aligned_cols=18  Identities=33%  Similarity=0.316  Sum_probs=12.9

Q ss_pred             ceeEeeeeccCCCCceec
Q psy17370        173 NVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       173 n~~ifaYG~tgSGKTyTm  190 (262)
                      +.+++-+|.+|+|||..+
T Consensus         4 ~~~~~i~G~~G~GKT~~~   21 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLI   21 (131)
T ss_dssp             ---EEEEE-TTSSHHHHH
T ss_pred             CcccEEEcCCCCCHHHHH
Confidence            457889999999999976

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=84.22  E-value=0.45  Score=42.26  Aligned_cols=49  Identities=24%  Similarity=0.174  Sum_probs=29.4

Q ss_pred             eeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370        139 YTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       139 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      +.|.+..+-.....+...+.... .+++.+-+|.|  ++-||+.|+||||-.
T Consensus        74 k~~~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~n--l~l~G~~G~GKThLa  122 (254)
T COG1484          74 KTFEEFDFEFQPGIDKKALEDLA-SLVEFFERGEN--LVLLGPPGVGKTHLA  122 (254)
T ss_pred             CCcccccccCCcchhHHHHHHHH-HHHHHhccCCc--EEEECCCCCcHHHHH
Confidence            34443333334445666666543 55545444444  566999999999966

>PF13245 AAA_19: Part of AAA domain

Probab=83.95  E-value=0.42  Score=34.39  Aligned_cols=25  Identities=20%  Similarity=0.220  Sum_probs=16.6

Q ss_pred             hhhhCCCceeEeeeeccCCCCceecC
Q psy17370        166 DAAFNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       166 ~~~l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      ...+. .+..+.--|..|||||+|+.
T Consensus         4 ~~al~-~~~~~vv~g~pGtGKT~~~~   28 (76)
T PF13245_consen    4 RRALA-GSPLFVVQGPPGTGKTTTLA   28 (76)
T ss_pred             HHHHh-hCCeEEEECCCCCCHHHHHH
Confidence            33445 23334448999999999874

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=83.93  E-value=0.4  Score=45.51  Aligned_cols=49  Identities=20%  Similarity=0.288  Sum_probs=32.1

Q ss_pred             CceeeeeceeeCCCCCcchhhcccchhhHhhhhC---CCceeEeeeeccCCCCceecC
Q psy17370        137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFN---GYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~---G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      .+..|+||.-. ...+++..|..     ...+-+   +...-||-||.+|+||||-|.
T Consensus        80 l~~~ytFdnFv-~g~~N~~A~aa-----~~~va~~~g~~~nplfi~G~~GlGKTHLl~  131 (408)
T COG0593          80 LNPKYTFDNFV-VGPSNRLAYAA-----AKAVAENPGGAYNPLFIYGGVGLGKTHLLQ  131 (408)
T ss_pred             CCCCCchhhee-eCCchHHHHHH-----HHHHHhccCCcCCcEEEECCCCCCHHHHHH
Confidence            56679999865 44555554433     223332   223468999999999999983

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=83.74  E-value=0.34  Score=42.91  Aligned_cols=18  Identities=33%  Similarity=0.331  Sum_probs=14.6

Q ss_pred             ceeEeeeeccCCCCceec
Q psy17370        173 NVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       173 n~~ifaYG~tgSGKTyTm  190 (262)
                      .+.|+--|.||||||.+|
T Consensus       127 ~~~ili~G~tGSGKTT~l  144 (270)
T PF00437_consen  127 RGNILISGPTGSGKTTLL  144 (270)
T ss_dssp             TEEEEEEESTTSSHHHHH
T ss_pred             ceEEEEECCCccccchHH
Confidence            345566699999999998

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=83.59  E-value=0.47  Score=44.48  Aligned_cols=26  Identities=35%  Similarity=0.548  Sum_probs=19.3

Q ss_pred             HhhhhCCCce-eEeeeeccCCCCceec
Q psy17370        165 LDAAFNGYNV-CLFAYGQTGSGKSYRG  190 (262)
Q Consensus       165 v~~~l~G~n~-~ifaYG~tgSGKTyTm  190 (262)
                      +..++.|.-. .++-||.+|+|||.++
T Consensus        33 l~~~~~~~~p~n~~iyG~~GTGKT~~~   59 (366)
T COG1474          33 LAPALRGERPSNIIIYGPTGTGKTATV   59 (366)
T ss_pred             HHHHhcCCCCccEEEECCCCCCHhHHH
Confidence            4455554433 3999999999999987

>PF12846 AAA_10: AAA-like domain

Probab=82.87  E-value=0.41  Score=42.18  Aligned_cols=19  Identities=37%  Similarity=0.410  Sum_probs=15.4

Q ss_pred             ceeEeeeeccCCCCceecC
Q psy17370        173 NVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       173 n~~ifaYG~tgSGKTyTm~  191 (262)
                      |.-++..|.||||||++|.
T Consensus         1 n~h~~i~G~tGsGKT~~~~   19 (304)
T PF12846_consen    1 NPHTLILGKTGSGKTTLLK   19 (304)
T ss_pred             CCeEEEECCCCCcHHHHHH
Confidence            3456778999999999884

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=82.60  E-value=0.52  Score=43.61  Aligned_cols=28  Identities=29%  Similarity=0.242  Sum_probs=20.6

Q ss_pred             hHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370        164 LLDAAFNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       164 lv~~~l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      .+..++.-..+.|+-.|.||||||.||.
T Consensus       113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~  140 (343)
T TIGR01420       113 VLRELAERPRGLILVTGPTGSGKSTTLA  140 (343)
T ss_pred             HHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence            4444554445678888999999999993

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK06835 DNA replication protein DnaC; Validated

Probab=82.59  E-value=0.54  Score=43.42  Aligned_cols=30  Identities=23%  Similarity=0.487  Sum_probs=21.9

Q ss_pred             chhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370        161 AQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       161 ~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      ++..++.+-.+. -.++-||++|+||||-+.
T Consensus       172 ~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~  201 (329)
T PRK06835        172 CKNFIENFDKNN-ENLLFYGNTGTGKTFLSN  201 (329)
T ss_pred             HHHHHHHHhccC-CcEEEECCCCCcHHHHHH
Confidence            335666665444 458899999999999774

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=82.52  E-value=0.64  Score=38.95  Aligned_cols=17  Identities=35%  Similarity=0.567  Sum_probs=14.5

Q ss_pred             eEeeeeccCCCCceecC
Q psy17370        175 CLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       175 ~ifaYG~tgSGKTyTm~  191 (262)
                      .++-+|++|+||||-..
T Consensus        49 ~l~l~G~~G~GKThLa~   65 (178)
T PF01695_consen   49 NLILYGPPGTGKTHLAV   65 (178)
T ss_dssp             EEEEEESTTSSHHHHHH
T ss_pred             EEEEEhhHhHHHHHHHH
Confidence            47889999999999763

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK08727 hypothetical protein; Validated

Probab=82.12  E-value=0.5  Score=41.17  Aligned_cols=18  Identities=28%  Similarity=0.383  Sum_probs=15.5

Q ss_pred             eeEeeeeccCCCCceecC
Q psy17370        174 VCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       174 ~~ifaYG~tgSGKTyTm~  191 (262)
                      -.++-||.+|+||||-+.
T Consensus        42 ~~l~l~G~~G~GKThL~~   59 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLAL   59 (233)
T ss_pred             CeEEEECCCCCCHHHHHH
Confidence            358999999999999774

>PRK08939 primosomal protein DnaI; Reviewed

Probab=82.10  E-value=0.52  Score=43.06  Aligned_cols=50  Identities=28%  Similarity=0.289  Sum_probs=30.3

Q ss_pred             eeeceeeCCCCCcchhhcccchhhHhhhhCC-CceeEeeeeccCCCCceecC
Q psy17370        141 FKLDHCLGQDTDQTSVFTIIAQPLLDAAFNG-YNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       141 f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G-~n~~ifaYG~tgSGKTyTm~  191 (262)
                      .+|+.+-.....+..++..+ ...++....| ..-.++-||.+|+||||-+.
T Consensus       124 atf~~~~~~~~~~~~~~~~~-~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~  174 (306)
T PRK08939        124 ASLADIDLDDRDRLDALMAA-LDFLEAYPPGEKVKGLYLYGDFGVGKSYLLA  174 (306)
T ss_pred             CcHHHhcCCChHHHHHHHHH-HHHHHHhhccCCCCeEEEECCCCCCHHHHHH
Confidence            34444332223555666643 4566655443 23358899999999999874

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=81.87  E-value=0.57  Score=41.77  Aligned_cols=28  Identities=21%  Similarity=0.253  Sum_probs=21.0

Q ss_pred             hHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370        164 LLDAAFNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       164 lv~~~l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      .+..++..-.+.|+-.|.||||||.+|.
T Consensus        71 ~l~~~~~~~~GlilisG~tGSGKTT~l~   98 (264)
T cd01129          71 IFRKLLEKPHGIILVTGPTGSGKTTTLY   98 (264)
T ss_pred             HHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence            3455565555667778999999999983

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=81.71  E-value=0.34  Score=38.58  Aligned_cols=18  Identities=28%  Similarity=0.671  Sum_probs=13.7

Q ss_pred             ceeEeee-eccCCCCceec
Q psy17370        173 NVCLFAY-GQTGSGKSYRG  190 (262)
Q Consensus       173 n~~ifaY-G~tgSGKTyTm  190 (262)
                      ...|+++ |.+|+||+|.-
T Consensus        52 KpLVlSfHG~tGtGKn~v~   70 (127)
T PF06309_consen   52 KPLVLSFHGWTGTGKNFVS   70 (127)
T ss_pred             CCEEEEeecCCCCcHHHHH
Confidence            3456665 99999999954

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=80.80  E-value=0.68  Score=43.26  Aligned_cols=23  Identities=35%  Similarity=0.304  Sum_probs=18.5

Q ss_pred             hCCCceeEeeeeccCCCCceecC
Q psy17370        169 FNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       169 l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      +.-..+.|+-.|+||||||.||.
T Consensus       130 ~~~~~glilI~GpTGSGKTTtL~  152 (358)
T TIGR02524       130 IAPQEGIVFITGATGSGKSTLLA  152 (358)
T ss_pred             HhccCCEEEEECCCCCCHHHHHH
Confidence            33346788889999999999983

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=80.69  E-value=0.67  Score=43.54  Aligned_cols=19  Identities=37%  Similarity=0.300  Sum_probs=16.2

Q ss_pred             CceeEeeeeccCCCCceec
Q psy17370        172 YNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       172 ~n~~ifaYG~tgSGKTyTm  190 (262)
                      .++.++-.|+||||||.||
T Consensus       148 ~~GlilI~G~TGSGKTT~l  166 (372)
T TIGR02525       148 AAGLGLICGETGSGKSTLA  166 (372)
T ss_pred             cCCEEEEECCCCCCHHHHH
Confidence            3556778999999999998

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=80.62  E-value=0.62  Score=42.85  Aligned_cols=27  Identities=30%  Similarity=0.302  Sum_probs=18.4

Q ss_pred             hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370        163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       163 plv~~~l~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      .++..++.+.. .|+-.|.||||||.+|
T Consensus       139 ~~L~~~v~~~~-~ilI~G~tGSGKTTll  165 (319)
T PRK13894        139 EAIIAAVRAHR-NILVIGGTGSGKTTLV  165 (319)
T ss_pred             HHHHHHHHcCC-eEEEECCCCCCHHHHH
Confidence            45555555443 4555599999999876

>cd01131 PilT Pilus retraction ATPase PilT

Probab=80.56  E-value=0.57  Score=39.73  Aligned_cols=18  Identities=39%  Similarity=0.374  Sum_probs=15.4

Q ss_pred             eeEeeeeccCCCCceecC
Q psy17370        174 VCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       174 ~~ifaYG~tgSGKTyTm~  191 (262)
                      +.|+-.|+||||||.++.
T Consensus         2 GlilI~GptGSGKTTll~   19 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLA   19 (198)
T ss_pred             cEEEEECCCCCCHHHHHH
Confidence            567778999999999983

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	262
2xt3_A	344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		3e-13
4a14_A	344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		3e-13
3gbj_A	354	Crystal Structure Of The Motor Domain Of Kinesin Ki		6e-13
4aqv_C	373	Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma		1e-11
4gkr_A	371	Structure Of The C-Terminal Motor Domain Of Kar3 Fr		1e-11
3u06_A	412	Crystal Structure Of The Kinesin-14 Ncdg347d Length		6e-11
1n6m_A	409	Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY		8e-11
2ncd_A	420	Ncd (Non-Claret Disjunctional) Dimer From D. Melano		8e-11
1cz7_A	406	The Crystal Structure Of A Minus-End Directed Micro		8e-11
1ii6_A	368	Crystal Structure Of The Mitotic Kinesin Eg5 In Com		1e-10
4a1z_A	368	Eg5-1 Length = 368		1e-10
4ap0_A	370	The Mitotic Kinesin Eg5 In Complex With Mg-Adp And		1e-10
1q0b_A	367	Crystal Structure Of The Motor Protein Ksp In Compl		1e-10
3hqd_A	369	Human Kinesin Eg5 Motor Domain In Complex With Ampp		1e-10
1ia0_K	394	Kif1a Head-Microtubule Complex Structure In Atp-For		1e-10
1f9u_A	347	Crystal Structures Of Mutants Reveal A Signalling P		1e-10
1f9w_A	347	Crystal Structures Of Mutants Reveal A Signalling P		2e-10
3kar_A	346	The Motor Domain Of Kinesin-Like Protein Kar3, A Sa		2e-10
1f9v_A	347	Crystal Structures Of Mutants Reveal A Signalling P		2e-10
1f9t_A	358	Crystal Structures Of Kinesin Mutants Reveal A Sign		2e-10
4a28_A	368	Eg5-2 Length = 368		2e-10
1x88_A	359	Human Eg5 Motor Domain Bound To Mg-Adp And Monastro		2e-10
3zcw_A	348	Eg5 - New Allosteric Binding Site Length = 348		2e-10
3l1c_A	383	Kinesin-14 Protein Ncd, T436s Mutant Length = 383		2e-10
1i5s_A	367	Crystal Structure Of The Kif1a Motor Domain Complex		4e-10
1vfv_A	366	Crystal Structure Of The Kif1a Motor Domain Complex		4e-10
1i6i_A	366	Crystal Structure Of The Kif1a Motor Domain Complex		4e-10
4etp_A	403	C-Terminal Motor And Motor Homology Domain Of Kar3v		2e-09
2wbe_C	373	Kinesin-5-Tubulin Complex With Amppnp Length = 373		2e-09
3t0q_A	349	Motor Domain Structure Of The Kar3-Like Kinesin Fro		3e-09
1t5c_A	349	Crystal Structure Of The Motor Domain Of Human Kine		5e-09
2rep_A	376	Crystal Structure Of The Motor Domain Of Human Kine		3e-08
2h58_A	330	Crystal Structure Of The Kifc3 Motor Domain In Comp		4e-08
3nwn_A	359	Crystal Structure Of The Human Kif9 Motor Domain In		5e-08
2owm_A	443	Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3		2e-07
2vvg_A	350	Crystal Structure Of The G.Intestinalis Kinesin 2 G		2e-07
3b6v_A	395	Crystal Structure Of The Motor Domain Of Human Kine		2e-07
3b6u_A	372	Crystal Structure Of The Motor Domain Of Human Kine		2e-07
1sdm_A	369	Crystal Structure Of Kinesin-Like Calmodulin Bindin		2e-07
3lre_A	355	Crystal Structure Analysis Of Human Kinesin-8 Motor		3e-07
2gry_A	420	Crystal Structure Of The Human Kif2 Motor Domain In		5e-07
1goj_A	355	Structure Of A Fast Kinesin: Implications For Atpas		6e-07
1v8j_A	410	The Crystal Structure Of The Minimal Functional Dom		1e-06
2heh_A	387	Crystal Structure Of The Kif2c Motor Domain (Casp T		1e-06
3h4s_A	386	Structure Of The Complex Of A Mitotic Kinesin With		3e-06
4h1g_A	715	Structure Of Candida Albicans Kar3 Motor Domain Fus		4e-06
2kin_A	238	Kinesin (Monomeric) From Rattus Norvegicus Length =		5e-06
3bfn_A	388	Crystal Structure Of The Motor Domain Of Human Kine		2e-05
1mkj_A	349	Human Kinesin Motor Domain With Docked Neck Linker		2e-05
1bg2_A	325	Human Ubiquitous Kinesin Motor Domain Length = 325		2e-05
4atx_C	340	Rigor Kinesin Motor Domain With An Ordered Neck-Lin		2e-05
3dc4_A	344	Crystal Structure Of The Drosophila Kinesin Family		3e-05
3pxn_A	344	Crystal Structure Of The Drosophila Kinesin Family		3e-05
3edl_D	331	Kinesin13-Microtubule Ring Complex Length = 331		9e-05
2y5w_A	365	Crystal Structure Of Drosophila Melanogaster Kinesi		3e-04

>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 102 VAVRIRPLLVKEL-HMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTII 160
           VA+R+RPLL KEL H   S +++ P    + +    +   F     L +D  Q +V+   
Sbjct: 15  VALRVRPLLPKELLHGHQSCLQVEPGLGRVTL---GRDRHFGFHVVLAEDAGQEAVYQAC 71
Query: 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
            QPLL+A F G+N  +FAYGQTGSGK+Y
Sbjct: 72  VQPLLEAFFEGFNATVFAYGQTGSGKTY 99

>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 102 VAVRIRPLLVKEL-HMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTII 160
           VA+R+RPLL KEL H   S +++ P    + +    +   F     L +D  Q +V+   
Sbjct: 15  VALRVRPLLPKELLHGHQSCLQVEPGLGRVTL---GRDRHFGFHVVLAEDAGQEAVYQAC 71
Query: 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
            QPLL+A F G+N  +FAYGQTGSGK+Y
Sbjct: 72  VQPLLEAFFEGFNATVFAYGQTGSGKTY 99

>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 64/127 (50%), Gaps = 25/127 (19%)
Query: 98  SRMTVAVRIRPLLVKE--LH------MDVSSIEISPDRREMKVND-NAKSYTFKLDHCL- 147
           S++ VAVRIRP+  +E  LH      +D + + ++P    +   D   +   F  DHC  
Sbjct: 1   SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFW 60
Query: 148 -----------GQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNS 196
                      GQD     VF  + + +L  AF+GYN C+FAYGQTGSGKSY    T + 
Sbjct: 61  SMDESVKEKYAGQDI----VFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQ 116
Query: 197 SVLRPRV 203
             L PR+
Sbjct: 117 PGLIPRL 123

>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 100 MTVAVRIRPLLVKELHMDVSSI-EISPDRREMKVN-----DNAKSYTFKLDHCLGQDTDQ 153
           + V VR+RP  + E      SI E  P R+E+ V      D +   T+  D   G  T Q
Sbjct: 19  IQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 78
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             V+  +  P+LD    GYN  +FAYGQTG+GK++
Sbjct: 79  IDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTF 113

>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 25/161 (15%)
Query: 81  LIMRSSSENCVADNLECSRMTVAV--RIRPLLVKE----LHMDVSSIEISPDRREMKVN- 133
           L+   S    + + L+  R  + V  RIRP L  E     H+ V   +     + M +N 
Sbjct: 9   LVKEESLRRALHNELQELRGNIRVYCRIRPPLPHEDDNIEHIKVQPFDDDNGDQGMTINR 68
Query: 134 DNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDST 193
            N++   FK D    Q      +F  + Q L+ ++ +GYNVC+FAYGQTGSGK+Y     
Sbjct: 69  GNSQVIPFKFDKIFDQQETNDEIFKEVGQ-LIQSSLDGYNVCIFAYGQTGSGKTY----- 122
Query: 194 LNSSVLRPRVLFYPG-----FSW----SHSGWTGWVSCVVV 225
              ++L P     P      FSW    +  GW+  VSC  +
Sbjct: 123 ---TMLNPGDGIVPATINHIFSWIDKLAARGWSYKVSCEFI 160

>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 17/157 (10%)
Query: 71  TPKIKLPRANLIMRSSSENCVADNLECSRMTVAVRIRPLLVKE--------LHMDVSSIE 122
           T K +L ++N+  R    N V D  +  R  V  RIRP L  E         + D S++E
Sbjct: 35  TCKEQLFQSNM-ERKELHNTVMDLRDNIR--VFCRIRPPLESEENRMCCTWTYHDESTVE 91
Query: 123 ISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQT 182
           +     + K     + ++F  D      + Q+ +F +++ PL+ +A +GYN+C+FAYGQT
Sbjct: 92  LQSIDAQAKSKMGQQIFSF--DQVFHPLSSQSDIFEMVS-PLIQSALDGYNICIFAYGQT 148
Query: 183 GSGKSYRGDSTLNSSVLRPR---VLFYPGFSWSHSGW 216
           GSGK+Y  D    S  + PR   +LF     + + GW
Sbjct: 149 GSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGW 185

>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 102 VAVRIRPLLVKE--------LHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
           V  RIRP L  E         + D S++E+     + K     + ++F  D      + Q
Sbjct: 60  VFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSF--DQVFHPLSSQ 117
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPR---VLFYPGFS 210
           + +F +++ PL+ +A +GYN+C+FAYGQTGSGK+Y  D    S  + PR   +LF     
Sbjct: 118 SDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRG 176
Query: 211 WSHSGW 216
           + + GW
Sbjct: 177 YRNLGW 182

>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 102 VAVRIRPLLVKE--------LHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
           V  RIRP L  E         + D S++E+     + K     + ++F  D      + Q
Sbjct: 71  VFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSF--DQVFHPLSSQ 128
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPR---VLFYPGFS 210
           + +F +++ PL+ +A +GYN+C+FAYGQTGSGK+Y  D    S  + PR   +LF     
Sbjct: 129 SDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRG 187
Query: 211 WSHSGW 216
           + + GW
Sbjct: 188 YRNLGW 193

>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 102 VAVRIRPLLVKE--------LHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
           V  RIRP L  E         + D S++E+     + K     + ++F  D      + Q
Sbjct: 57  VFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSF--DQVFHPLSSQ 114
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPR---VLFYPGFS 210
           + +F +++ PL+ +A +GYN+C+FAYGQTGSGK+Y  D    S  + PR   +LF     
Sbjct: 115 SDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRG 173
Query: 211 WSHSGW 216
           + + GW
Sbjct: 174 YRNLGW 179

>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 100 MTVAVRIRPLLVKELHMDVSSI-EISPDRREMKVN-----DNAKSYTFKLDHCLGQDTDQ 153
           + V VR RP  + E      SI E  P R+E+ V      D +   T+  D   G  T Q
Sbjct: 19  IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 78
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             V+  +  P+LD    GYN  +FAYGQTG+GK++
Sbjct: 79  IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTF 113

>pdb|4A1Z|A Chain A, Eg5-1 Length = 368

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 100 MTVAVRIRPLLVKELHMDVSSI-EISPDRREMKVN-----DNAKSYTFKLDHCLGQDTDQ 153
           + V VR RP  + E      SI E  P R+E+ V      D +   T+  D   G  T Q
Sbjct: 19  IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 78
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             V+  +  P+LD    GYN  +FAYGQTG+GK++
Sbjct: 79  IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTF 113

>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 100 MTVAVRIRPLLVKELHMDVSSI-EISPDRREMKVN-----DNAKSYTFKLDHCLGQDTDQ 153
           + V VR RP  + E      SI E  P R+E+ V      D +   T+  D   G  T Q
Sbjct: 21  IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 80
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             V+  +  P+LD    GYN  +FAYGQTG+GK++
Sbjct: 81  IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTF 115

>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 100 MTVAVRIRPLLVKELHMDVSSI-EISPDRREMKVN-----DNAKSYTFKLDHCLGQDTDQ 153
           + V VR RP  + E      SI E  P R+E+ V      D +   T+  D   G  T Q
Sbjct: 18  IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 77
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             V+  +  P+LD    GYN  +FAYGQTG+GK++
Sbjct: 78  IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTF 112

>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 100 MTVAVRIRPLLVKELHMDVSSI-EISPDRREMKVN-----DNAKSYTFKLDHCLGQDTDQ 153
           + V VR RP  + E      SI E  P R+E+ V      D +   T+  D   G  T Q
Sbjct: 19  IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 78
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             V+  +  P+LD    GYN  +FAYGQTG+GK++
Sbjct: 79  IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTF 113

>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 11/106 (10%)
Query: 94  NLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVN-----DNAKSYTFKLD---H 145
           N+  + + VAVR+RP   +E+  D   I          VN     +  KS++F      H
Sbjct: 16  NMPGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSH 75
Query: 146 CLGQDTD---QTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
              +D +   Q  V+  I + +L  AF GYNVC+FAYGQTG+GKSY
Sbjct: 76  TSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSY 121

>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 24/137 (17%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISP--------DRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
           V  RIRP L    + D S I ++              K+ + A+ + FK D    Q    
Sbjct: 7   VYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTN 66
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYR----GDSTLNSSVLRPRVLFYPGF 209
             VF  + Q L+ ++ +GYNVC+FAYGQTGSGK++     GD  + S++          F
Sbjct: 67  VDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHI-------F 118
Query: 210 SWSH----SGWTGWVSC 222
           +W +     GW   V+C
Sbjct: 119 NWINKLKTKGWDYKVNC 135

>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 24/137 (17%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISP--------DRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
           V  RIRP L    + D S I ++              K+ + A+ + FK D    Q    
Sbjct: 7   VYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTN 66
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYR----GDSTLNSSVLRPRVLFYPGF 209
             VF  + Q L+ ++ +GYNVC+FAYGQTGSGK++     GD  + S++          F
Sbjct: 67  VDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHI-------F 118
Query: 210 SWSH----SGWTGWVSC 222
           +W +     GW   V+C
Sbjct: 119 NWINKLKTKGWDYKVNC 135

>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 24/137 (17%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISP--------DRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
           V  RIRP L    + D S I ++              K+ + A+ + FK D    Q    
Sbjct: 6   VYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTN 65
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYR----GDSTLNSSVLRPRVLFYPGF 209
             VF  + Q L+ ++ +GYNVC+FAYGQTGSGK++     GD  + S++          F
Sbjct: 66  VDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHI-------F 117
Query: 210 SWSH----SGWTGWVSC 222
           +W +     GW   V+C
Sbjct: 118 NWINKLKTKGWDYKVNC 134

>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 24/137 (17%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISP--------DRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
           V  RIRP L    + D S I ++              K+ + A+ + FK D    Q    
Sbjct: 7   VYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTN 66
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYR----GDSTLNSSVLRPRVLFYPGF 209
             VF  + Q L+ ++ +GYNVC+FAYGQTGSGK++     GD  + S++          F
Sbjct: 67  VDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHI-------F 118
Query: 210 SWSH----SGWTGWVSC 222
           +W +     GW   V+C
Sbjct: 119 NWINKLKTKGWDYKVNC 135

>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 24/137 (17%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISP--------DRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
           V  RIRP L    + D S I ++              K+ + A+ + FK D    Q    
Sbjct: 18  VYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTN 77
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYR----GDSTLNSSVLRPRVLFYPGF 209
             VF  + Q L+ ++ +GYNVC+FAYGQTGSGK++     GD  + S++          F
Sbjct: 78  VDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHI-------F 129
Query: 210 SWSH----SGWTGWVSC 222
           +W +     GW   V+C
Sbjct: 130 NWINKLKTKGWDYKVNC 146

>pdb|4A28|A Chain A, Eg5-2 Length = 368

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 100 MTVAVRIRPLLVKELHMDVSSI-EISPDRREMKVN-----DNAKSYTFKLDHCLGQDTDQ 153
           + V VR RP  + E      SI E  P R+E+ V      D +   T+  D   G  T Q
Sbjct: 19  IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 78
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             V+  +  P+LD    GYN  +FAYGQTG+GK++
Sbjct: 79  IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTF 113

>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 100 MTVAVRIRPLLVKELHMDVSSI-EISPDRREMKVN-----DNAKSYTFKLDHCLGQDTDQ 153
           + V VR RP  + E      SI E  P R+E+ V      D +   T+  D   G  T Q
Sbjct: 10  IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 69
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             V+  +  P+LD    GYN  +FAYGQTG+GK++
Sbjct: 70  IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTF 104

>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 100 MTVAVRIRPLLVKELHMDVSSI-EISPDRREMKVN-----DNAKSYTFKLDHCLGQDTDQ 153
           + V VR RP  + E      SI E  P R+E+ V      D +   T+  D   G  T Q
Sbjct: 4   IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 63
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             V+  +  P+LD    GYN  +FAYGQTG+GK++
Sbjct: 64  IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTF 98

>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 102 VAVRIRPLLVKE--------LHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
           V  RIRP L  E         + D S++E+     + K     + ++F  D      + Q
Sbjct: 60  VFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSF--DQVFHPLSSQ 117
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPR---VLFYPGFS 210
           + +F +++ PL+ +A +GYN+C+FAYGQ+GSGK+Y  D    S  + PR   +LF     
Sbjct: 118 SDIFEMVS-PLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLLFDSIRG 176
Query: 211 WSHSGW 216
           + + GW
Sbjct: 177 YRNLGW 182

>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISPDRREMKVN-----DNAKSYTFKLD---HCLGQDTD- 152
           VAVR+RP   +E+  D   I          VN     +  KS++F      H   +D + 
Sbjct: 8   VAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINY 67
Query: 153 --QTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             Q  V+  I + +L  AF GYNVC+FAYGQTG+GKSY
Sbjct: 68  ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSY 105

>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISPDRREMKVN-----DNAKSYTFKLD---HCLGQDTD- 152
           VAVR+RP   +E+  D   I          VN     +  KS++F      H   +D + 
Sbjct: 8   VAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINY 67
Query: 153 --QTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             Q  V+  I + +L  AF GYNVC+FAYGQTG+GKSY
Sbjct: 68  ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSY 105

>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISPDRREMKVN-----DNAKSYTFKLD---HCLGQDTD- 152
           VAVR+RP   +E+  D   I          VN     +  KS++F      H   +D + 
Sbjct: 8   VAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINY 67
Query: 153 --QTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             Q  V+  I + +L  AF GYNVC+FAYGQTG+GKSY
Sbjct: 68  ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSY 105

>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISP--------DRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
           V +RIRP L    + D S I ++              K+ + A+ + FK D    Q    
Sbjct: 63  VYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTN 122
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             VF  + Q L+ ++ +GYNV +FAYGQTGSGK++
Sbjct: 123 VDVFKEVGQ-LVQSSLDGYNVAIFAYGQTGSGKTF 156

>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 100 MTVAVRIRPLLVKELHMDVSSIEISPDRREMKVN---DNAKSYTFKLDHCLGQDTDQTSV 156
           + V VR+RPL  +E  +  + +      RE+      D+  +  F  D   G ++ Q  V
Sbjct: 25  IQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDV 84
Query: 157 FTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
           ++++  PL++   NGYN  +FAYGQTG+GK++
Sbjct: 85  YSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTH 116

>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 102 VAVRIRPLLVKE----LHMDVSSIEISPDRREMKVNDNAK---SYTFKLDHCLGQDTDQT 154
           V  R+RP L+ E     H+ +     +   + + +N N     SY F+ D          
Sbjct: 9   VYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNK 68
Query: 155 SVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSS-VLRPRVLFYPGFSWS- 212
            +F  I Q L+ ++ +GYNVC+FAYGQTGSGK+Y   + LN+   + P  L +  F W+ 
Sbjct: 69  EIFEEIRQ-LVQSSLDGYNVCIFAYGQTGSGKTY---TMLNAGDGMIPMTLSHI-FKWTA 123
Query: 213 ---HSGWTGWVSCVVV 225
                GW   + C  +
Sbjct: 124 NLKERGWNYEMECEYI 139

>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 96  ECSRMTVAVRIRPLLVKELHM-DVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQT 154
           E   + V VR+RPL  +E  + + + +    D   +   D +KS+ F  D     +    
Sbjct: 2   EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNF--DRVFHGNETTK 59
Query: 155 SVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
           +V+  IA P++D+A  GYN  +FAYGQT SGK+Y
Sbjct: 60  NVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTY 93

>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 139 YTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYR------GDS 192
           + F  D      + Q  VF  IA  L+ +A +GY VC+FAYGQTGSGK++       GD 
Sbjct: 83  HDFSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDP 141
Query: 193 TLNSSVLRP-RVLFYPGFSWSHSGWT 217
            L   + R  R LF      S  GWT
Sbjct: 142 QLEGLIPRALRHLFSVAQELSGQGWT 167

>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 136 AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLN 195
            K  +F+LD        Q  VF  + Q L+ +  +G+NVC+FAYGQTG+GK+Y  + T  
Sbjct: 45  GKPVSFELDKVFSPQASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAE 103
Query: 196 SSVLRPRVLFYPGFSWSHSGWTGWVSCVVVIAVDF 230
           +  +  R L    FS      + W   + V A + 
Sbjct: 104 NPGINQRALQLL-FSEVQEKASDWEYTITVSAAEI 137

>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 121 IEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYG 180
           I +  D R   VN+    ++FKLD  L  D  Q  V+  +A+ ++  A +GYN  +  YG
Sbjct: 54  IHLKKDIRRGVVNNQQTDWSFKLDGVL-HDASQDLVYETVAKDVVSQALDGYNGTIMCYG 112
Query: 181 QTGSGKSY 188
           QTG+GK+Y
Sbjct: 113 QTGAGKTY 120

>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 30/51 (58%)
Query: 153 QTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRV 203
           Q  V+  + +  LD  F GY+ C+FAYGQTGSGKSY    T +   L PR 
Sbjct: 117 QEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRT 167

>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 95  LECSRMTVAVRIRPLLVKE--------LHMDVSSIEI---SPDRREMKVNDNAKSYTFKL 143
           +    + V VR RPL  +E        + MD +S ++    P++ +          TF  
Sbjct: 1   MSSDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTF 60
Query: 144 DHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
           D    Q +    +F    +PL+DA   G+N  +FAYGQTG+GK++
Sbjct: 61  DAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTW 105

>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 20/119 (16%)
Query: 78  RANLIMRSSSENCVADNLECSRMTVAVRIRPLLVKE--------LHMDVSSIEISPDRRE 129
           R NL  + +SE           + V  R RPL  KE        L MDV   +++     
Sbjct: 11  RENLYFQGASE----------ALKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPR 60
Query: 130 MKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
               +  K++TF  D      + Q  ++    +PL+D+   G+N  +FAYGQTG+GK+Y
Sbjct: 61  AAPGELPKTFTF--DAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTY 117

>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 25/127 (19%)
Query: 78  RANLIMRSSSENCVADNLECSRMTVAVRIRPLLVKE--------LHMDVSSIEISPDRRE 129
           R NL  + SSE+          + V VR RP+  KE        + +DV   ++S    +
Sbjct: 11  RENLYFQGSSES----------VRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPK 60
Query: 130 MKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY- 188
              ++  K++TF  D     +  Q  ++    +PL+D+   G+N  +FAYGQTG+GK+Y 
Sbjct: 61  GTAHEMPKTFTF--DAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYT 118
Query: 189 ----RGD 191
               RGD
Sbjct: 119 MEGIRGD 125

>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 22/101 (21%)
Query: 99  RMTVAVRIRPLLVKELHMDVSSIEISPDRREMKV-----------NDNAKSYTFKLDHCL 147
           ++ V  R+RPL  KE+        I+ +R  ++            +D AK + +  D   
Sbjct: 6   KIRVYCRLRPLCEKEI--------IAKERNAIRSVDEFTVEHLWKDDKAKQHMY--DRVF 55
Query: 148 GQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             +  Q  VF    + L+ +A +GYNVC+FAYGQTGSGK++
Sbjct: 56  DGNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTF 95

>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 25/130 (19%)
Query: 97  CSRMTVAVRIRPLLVKE----LHMDVSSIE-----ISPDRREMK-------VNDNA---- 136
           C  M V VR+RP   KE     H  V  ++       P + E+         N N     
Sbjct: 9   CHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQ 68
Query: 137 -KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLN 195
            K   F  D    + + Q+ VF    +P+L +  NGYN  + AYG TG+GK++    T+ 
Sbjct: 69  NKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTH----TML 124
Query: 196 SSVLRPRVLF 205
            S   P V++
Sbjct: 125 GSADEPGVMY 134

>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 92  ADNLECSRMTVAVRIRPLLVKELHM-DVSSIEI-SPD-------RREMKVNDNAKSYTFK 142
           AD ++  R+ V VR RPL  KE  M D+  I I S D       ++++ +    ++ TF+
Sbjct: 83  ADPIDEHRICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFR 142
Query: 143 LDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
            D+          V+   A+PL++  F       FAYGQTGSGK++
Sbjct: 143 FDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTH 188

>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 140 TFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
           +F  D        Q+ +F    +P +D   NGYN  +FAYGQTG+GKSY
Sbjct: 48  SFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSY 96

>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 91  VADNLECSRMTVAVRIRPLLVKEL---HMDVSSIE------ISPDRREMKVNDNAKSYTF 141
           V D +E  R+ V VR RPL  +EL    +DV S+       +   + ++ +    ++  F
Sbjct: 64  VTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAF 123
Query: 142 KLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             D    +      V+   A+PL+   F G     FAYGQTGSGK++
Sbjct: 124 CFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTH 170

>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 91  VADNLECSRMTVAVRIRPLLVKEL---HMDVSSIE------ISPDRREMKVNDNAKSYTF 141
           + D +E  R+ V VR RPL  +EL    +DV SI       +   + ++ +    ++  F
Sbjct: 44  MTDPIEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAF 103
Query: 142 KLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             D    +      V+   A+PL+   F G     FAYGQTGSGK++
Sbjct: 104 CFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTH 150

>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 99  RMTVAVRIRPLLVKELHMDVSSIEISPDRREMK---VNDNAKSYTFKLDHCLGQDTDQTS 155
           ++ V  RIRPL  KE       +  + D   ++    +D  K + +  D        Q  
Sbjct: 14  KIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKRKQHIY--DRVFDMRASQDD 71
Query: 156 VFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
           +F    + L+ +A +GYNVC+FAYGQTGSGK++
Sbjct: 72  IFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTF 103

>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 132 VNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD 191
           +N+N  +  F  D    ++     VF  ++Q L+  + +G NVC+FAYGQTGSGK++   
Sbjct: 423 INNNFSNLRFLFDKIFEREQSNDLVFEELSQ-LIQCSLDGTNVCVFAYGQTGSGKTFTMS 481
Query: 192 STLNSSV-LRPRVLFYPGFSWSHSGWT 217
              N  + L  + +F         GW+
Sbjct: 482 HPTNGMIPLSLKKIFNDIEELKEKGWS 508

>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 92  ADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRR--EMKVNDNAKSYTFKLDHCLGQ 149
           AD  ECS + V  R RPL   E+   +   +  P  +  E  V    K Y F  D  L  
Sbjct: 1   ADPAECS-IKVMCRFRPLNEAEI---LRGDKFIPKFKGEETVVIGQGKPYVF--DRVLPP 54
Query: 150 DTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLR---PRV 203
           +T Q  V+   A+ ++     GYN  +FAYGQT SGK++  +  L+   L    PR+
Sbjct: 55  NTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRI 111

>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 98  SRMTVAVRIRPLLVKELH---------MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLG 148
           +R+ VAVR+RP +              MD  S+EI+  R      ++ ++  ++ D   G
Sbjct: 21  ARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWR------NHQETLKYQFDAFYG 74
Query: 149 QDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
           + + Q  ++    QP+L     G N  + AYG TG+GK++
Sbjct: 75  ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTH 114

>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 91  VADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQD 150
           +AD  EC+ + V  R RPL   E  ++     I+  + E  V   +K Y F  D      
Sbjct: 1   MADLAECN-IKVMCRFRPL--NESEVNRGDKYIAKFQGEDTVVIASKPYAF--DRVFQSS 55
Query: 151 TDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLN 195
           T Q  V+   A+ ++     GYN  +FAYGQT SGK++  +  L+
Sbjct: 56  TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLH 100

>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 91  VADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQD 150
           +AD  EC+ + V  R RPL   E  ++     I+  + E  V   +K Y F  D      
Sbjct: 1   MADLAECN-IKVMCRFRPL--NESEVNRGDKYIAKFQGEDTVVIASKPYAF--DRVFQSS 55
Query: 151 TDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLN 195
           T Q  V+   A+ ++     GYN  +FAYGQT SGK++  +  L+
Sbjct: 56  TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLH 100

>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 91  VADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQD 150
           +AD  EC+ + V  R RPL   E  ++     ++  + E  V   +K Y F  D      
Sbjct: 1   MADPAECN-IKVMCRFRPL--NESEVNRGDKYVAKFQGEDTVMIASKPYAF--DRVFQSS 55
Query: 151 TDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLN 195
           T Q  V+   A+ ++     GYN  +FAYGQT SGK++  +  L+
Sbjct: 56  TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLH 100

>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 126 DRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSG 185
           D + + V+ N     F  DH       Q  ++  +  PL+D    G+     AYGQTG+G
Sbjct: 52  DGKSLIVDQN----EFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTG 107
Query: 186 KSY 188
           KSY
Sbjct: 108 KSY 110

>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 126 DRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSG 185
           D + + V+ N     F  DH       Q  ++  +  PL+D    G+     AYGQTG+G
Sbjct: 52  DGKSLIVDQNE----FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTG 107
Query: 186 KSY 188
           KSY
Sbjct: 108 KSY 110

>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 100 MTVAVRIRPLLVKEL---HMDVSSIE------ISPDRREMKVNDNAKSYTFKLDHCLGQD 150
           + V VR RPL  +EL    +DV S+       +   + ++ +    ++  F  D    + 
Sbjct: 1   ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 60
Query: 151 TDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
                V+   A+PL+   F G     FAYGQTGSGK++
Sbjct: 61  ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTH 98

>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 136 AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLN 195
            K Y F  D     +  Q  V+   A+ ++     GYN  +FAYGQT SGK++  +  + 
Sbjct: 50  GKVYLF--DKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIG 107
Query: 196 SSV---LRPRVL 204
            SV   + PR++
Sbjct: 108 DSVKQGIIPRIV 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	262
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	2e-28
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	4e-28
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	5e-28
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	6e-28
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	5e-27
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	7e-27
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	7e-27
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	9e-27
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	1e-26
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	1e-26
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	2e-26
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	3e-26
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	7e-26
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	2e-25
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	2e-25
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	2e-25
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	9e-25
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	1e-24
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	1e-24
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	6e-24
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	1e-23
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	1e-23
3u06_A	412	Protein claret segregational; motor domain, stalk	2e-23
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	2e-23
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	1e-21
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	1e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349

 Score =  109 bits (276), Expect = 2e-28
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 102 VAVRIRPLLVKELHM-DVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTII 160
           V VR+RPL  +E  + + + +    D   +   D +KS+ F  D     +    +V+  I
Sbjct: 8   VCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNF--DRVFHGNETTKNVYEEI 65

Query: 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
           A P++D+A  GYN  +FAYGQT SGK+Y
Sbjct: 66  AAPIIDSAIQGYNGTIFAYGQTASGKTY 93

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344

 Score =  108 bits (273), Expect = 4e-28
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 11/106 (10%)

Query: 83  MRSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFK 142
           M  +  + V          +AVR  P        + S ++  P      +  +   + F 
Sbjct: 16  MEGAKLSAV---------RIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIVDQNEFHF- 65

Query: 143 LDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
            DH       Q  ++  +  PL+D    G+     AYGQTG+GKSY
Sbjct: 66  -DHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSY 110

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344

 Score =  108 bits (273), Expect = 5e-28
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 13/107 (12%)

Query: 83  MRSSSENCVADNLECSRMTVAVRIRPLLVKEL-HMDVSSIEISPDRREMKVNDNAKSYTF 141
           +  + E  V          VA+R+RPLL KEL H   S +++ P    + +  + + + F
Sbjct: 5   LPGAEEAPV---------RVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRD-RHFGF 54

Query: 142 KLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
                L +D  Q +V+    QPLL+A F G+N  +FAYGQTGSGK+Y
Sbjct: 55  --HVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTY 99

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365

 Score =  108 bits (273), Expect = 6e-28
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 102 VAVRIRPLLVKELHMDVSSI-EISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTII 160
           V  R RPL   E       + +   +  E  ++   K Y F  D     +  Q  V+   
Sbjct: 15  VVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLF--DKVFKPNASQEKVYNEA 72

Query: 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
           A+ ++     GYN  +FAYGQT SGK++
Sbjct: 73  AKSIVTDVLAGYNGTIFAYGQTSSGKTH 100

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354

 Score =  106 bits (266), Expect = 5e-27
 Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 21/110 (19%)

Query: 98  SRMTVAVRIRPLLVKEL--------HMDVSSIEISP---DRREMKVNDNAKSYTFKLDHC 146
           S++ VAVRIRP+  +E          +D + + ++P   +  +       K + +  DHC
Sbjct: 1   SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAY--DHC 58

Query: 147 LG--------QDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
                     +   Q  VF  + + +L  AF+GYN C+FAYGQTGSGKSY
Sbjct: 59  FWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSY 108

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410

 Score =  106 bits (267), Expect = 7e-27
 Identities = 38/146 (26%), Positives = 58/146 (39%), Gaps = 18/146 (12%)

Query: 58  QARRAMSADRSPATP------KIKLPRANLIMRSSSENCVADNLECSRMTVAVRIRPLLV 111
           + R   + +   + P       IK  R  +     +     D +E  R+ V VR RPL  
Sbjct: 28  ELRIKRAQEYDSSFPNWEFARMIKEFRVTMECSPLTVT---DPIEEHRICVCVRKRPLNK 84

Query: 112 KELHM-DVSSIEISPDR----REMKVNDNAKSY----TFKLDHCLGQDTDQTSVFTIIAQ 162
           +EL   ++  I +         E K+  +   Y     F  D    +      V+   A+
Sbjct: 85  QELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTAR 144

Query: 163 PLLDAAFNGYNVCLFAYGQTGSGKSY 188
           PL+   F G     FAYGQTGSGK++
Sbjct: 145 PLVQTIFEGGKATCFAYGQTGSGKTH 170

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372

 Score =  106 bits (266), Expect = 7e-27
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 102 VAVRIRPLLVKEL--------HMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
           V VR RP+  KE          +DV   ++S    +   ++  K++TF  D     +  Q
Sbjct: 25  VVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTF--DAVYDWNAKQ 82

Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             ++    +PL+D+   G+N  +FAYGQTG+GK+Y
Sbjct: 83  FELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTY 117

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359

 Score =  105 bits (264), Expect = 9e-27
 Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 102 VAVRIRPLLVKELHMDVSSI-EISPDRREMKV-------NDNAKSYTFKLDHCLGQDTDQ 153
           V VR RP  + E      SI E  P R+E+ V         + K+YTF  D   G  T Q
Sbjct: 12  VVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTF--DMVFGASTKQ 69

Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             V+  +  P+LD    GYN  +FAYGQTG+GK++
Sbjct: 70  IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTF 104

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387

 Score =  105 bits (265), Expect = 1e-26
 Identities = 41/146 (28%), Positives = 57/146 (39%), Gaps = 18/146 (12%)

Query: 58  QARRAMSADRSPATP------KIKLPRANLIMRSSSENCVADNLECSRMTVAVRIRPLLV 111
               +    R  + P       IK  RA L     +     D +E  R+ V VR RPL  
Sbjct: 8   HHHSSGLVPRGSSFPNWEFARMIKEFRATLECHPLTMT---DPIEEHRICVCVRKRPLNK 64

Query: 112 KELHM-DVSSIEISPDR----REMKVNDNAKSY----TFKLDHCLGQDTDQTSVFTIIAQ 162
           +EL   ++  I I         E K+  +   Y     F  D    +      V+   A+
Sbjct: 65  QELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTAR 124

Query: 163 PLLDAAFNGYNVCLFAYGQTGSGKSY 188
           PL+   F G     FAYGQTGSGK++
Sbjct: 125 PLVQTIFEGGKATCFAYGQTGSGKTH 150

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443

 Score =  106 bits (266), Expect = 1e-26
 Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 24/149 (16%)

Query: 64  SADRSPATPKIKLPRANLIMRSSSENCVADNLECSRMTVAVRIRPLLVKEL--------H 115
           S D      +  +    L  R  + +        + + V VR+R  L +EL         
Sbjct: 4   SLDVHQRQTRSNVSTPTLRPRDDTASSFVSKDPGANVRVVVRVRAFLPRELERNAECIVE 63

Query: 116 MDVSSIEI---------SPDRREMKVNDNAKSYTFKLDHCLG-------QDTDQTSVFTI 159
           MD ++              D R  +     +  +F  D               Q  V+  
Sbjct: 64  MDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHYATQEHVYDS 123

Query: 160 IAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
           + +  LD  F GY+ C+FAYGQTGSGKSY
Sbjct: 124 LGEEFLDHNFEGYHTCIFAYGQTGSGKSY 152

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355

 Score =  104 bits (262), Expect = 2e-26
 Identities = 28/87 (32%), Positives = 37/87 (42%)

Query: 102 VAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIA 161
           V  R RP    E+      I          V+      +F  D        Q+ +F    
Sbjct: 10  VVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSI 69

Query: 162 QPLLDAAFNGYNVCLFAYGQTGSGKSY 188
           +P +D   NGYN  +FAYGQTG+GKSY
Sbjct: 70  KPTVDDILNGYNGTVFAYGQTGAGKSY 96

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388

 Score =  104 bits (262), Expect = 3e-26
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 84  RSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNA-----KS 138
            SS    +      +R+ VAVR+RP +               D   +++ +         
Sbjct: 7   HSSGRENLYFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLK 66

Query: 139 YTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
           Y F  D   G+ + Q  ++    QP+L     G N  + AYG TG+GK++
Sbjct: 67  YQF--DAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTH 114

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325

 Score =  102 bits (257), Expect = 7e-26
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 13/106 (12%)

Query: 83  MRSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFK 142
           M   +E  +          V  R RPL   E++     I        + +    K Y F 
Sbjct: 1   MADLAECNI---------KVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIAS--KPYAF- 48

Query: 143 LDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
            D      T Q  V+   A+ ++     GYN  +FAYGQT SGK++
Sbjct: 49  -DRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTH 93

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373

 Score =  102 bits (256), Expect = 2e-25
 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 7/92 (7%)

Query: 102 VAVRIRPLLVKELHMDVSSI-EISPDRREMKVN----DNAKSYTFKLDHCLGQDTDQTSV 156
           V VR+RPL  +E  +  + + ++   R  +  +       K +TF  D   G ++ Q  V
Sbjct: 27  VYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTF--DRSFGPESKQCDV 84

Query: 157 FTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
           ++++  PL++   NGYN  +FAYGQTG+GK++
Sbjct: 85  YSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTH 116

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366

 Score =  101 bits (255), Expect = 2e-25
 Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 21/105 (20%)

Query: 100 MTVAVRIRPLLVKEL--------HMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDT 151
           + VAVR+RP   +E+         M  S+  I   ++     +  KS++F  D+     T
Sbjct: 6   VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQP---KETPKSFSF--DYSYWSHT 60

Query: 152 --------DQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
                    Q  V+  I + +L  AF GYNVC+FAYGQTG+GKSY
Sbjct: 61  SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSY 105

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350

 Score =  101 bits (254), Expect = 2e-25
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 15/100 (15%)

Query: 102 VAVRIRPLLVKEL--------HMDVSSIEIS-----PDRREMKVNDNAKSYTFKLDHCLG 148
           V VR RPL  +E          MD +S ++       ++   +     +++TF  D    
Sbjct: 8   VIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTF--DAVYD 65

Query: 149 QDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
           Q +    +F    +PL+DA   G+N  +FAYGQTG+GK++
Sbjct: 66  QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTW 105

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369

 Score =   99 bits (250), Expect = 9e-25
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 102 VAVRIRPLLVKELHM-DVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTII 160
           V  R+RPL  KE+   + ++I    +     +  + K+     D     +  Q  VF   
Sbjct: 9   VYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDT 68

Query: 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
            + L+ +A +GYNVC+FAYGQTGSGK++
Sbjct: 69  -KYLVQSAVDGYNVCIFAYGQTGSGKTF 95

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355

 Score =  100 bits (250), Expect = 1e-24
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 25/116 (21%)

Query: 96  ECSRMTVAVRIRPLLVKEL--------HMDVSSIEI---------------SPDRREMKV 132
            C  M V VR+RP   KE         H+    I +               + ++  +K 
Sbjct: 8   LCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKK 67

Query: 133 NDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
            +    + F  D    + + Q+ VF    +P+L +  NGYN  + AYG TG+GK++
Sbjct: 68  QNKDLKFVF--DAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTH 121

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330

 Score = 99.1 bits (248), Expect = 1e-24
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 102 VAVRIRPLLVKELHMDVSSIEISPDRREMKV---NDNAKSYTFKLDHCLGQDTDQTSVFT 158
           V  R+RP+  ++     ++  ++ D  +  +       K  +F+LD        Q  VF 
Sbjct: 8   VIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQ 67

Query: 159 IIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
            + Q L+ +  +G+NVC+FAYGQTG+GK+Y
Sbjct: 68  EV-QALVTSCIDGFNVCIFAYGQTGAGKTY 96

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347

 Score = 97.7 bits (244), Expect = 6e-24
 Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 102 VAVRIRPLLVKELHMDVSSIEISPDRREMKV--------NDNAKSYTFKLDHCLGQDTDQ 153
           V  RIRP L    + D S I ++       V         + A+ + FK D    Q    
Sbjct: 7   VYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTN 66

Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             VF  +   L+ ++ +GYNVC+FAYGQTGSGK++
Sbjct: 67  VDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTF 100

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349

 Score = 96.9 bits (242), Expect = 1e-23
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 8/94 (8%)

Query: 102 VAVRIRPLLVKEL----HMDVSSIEISPDRREMKVNDNA---KSYTFKLDHCLGQDTDQT 154
           V  R+RP L+ E     H+ +     +   + + +N N     SY F+ D          
Sbjct: 9   VYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNK 68

Query: 155 SVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
            +F  I + L+ ++ +GYNVC+FAYGQTGSGK+Y
Sbjct: 69  EIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTY 101

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412

 Score = 96.9 bits (242), Expect = 2e-23
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 11/95 (11%)

Query: 102 VAVRIRPLLVKELH--------MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
           V  RIRP L  E +         D S++E+     + K     + ++F  D      + Q
Sbjct: 63  VFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSF--DQVFHPLSSQ 120

Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
           + +F +++ PL+ +A +GYN+C+FAYGQTGSGK+Y
Sbjct: 121 SDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTY 154

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403

 Score = 96.6 bits (241), Expect = 2e-23
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 9/95 (9%)

Query: 102 VAVRIRPLLVKELHMDVSSIEISP--------DRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
           V +RIRP L    + D S I ++              K+ + A+ + FK D    Q    
Sbjct: 63  VYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTN 122

Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             VF  +   L+ ++ +GYNV +FAYGQTGSGK++
Sbjct: 123 VDVFKEVG-QLVQSSLDGYNVAIFAYGQTGSGKTF 156

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360

 Score = 91.5 bits (228), Expect = 1e-21
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 100 MTVAVRIRPLLVKELHMDVSSIEISPDRREMKVND-----------NAKSYTFKLDHCLG 148
           + V VR RPL   E     S I    +   + +++               +    D    
Sbjct: 2   IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIV--DKVFD 59

Query: 149 QDTDQTSVFTIIAQPLLDAAF-NGYNVCLFAYGQTGSGKSY 188
              D  +V+    +PL+   + NG     FAYGQTGSGK+Y
Sbjct: 60  DTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTY 100

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376

 Score = 91.6 bits (228), Expect = 1e-21
 Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 21/107 (19%)

Query: 102 VAVRIRPLLVKELHMDVSSIEISPDRREM--------------------KVNDNAKSYTF 141
           V  R+RP+L  E       +                                     + F
Sbjct: 26  VFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDF 85

Query: 142 KLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
             D      + Q  VF  IA  L+ +A +GY VC+FAYGQTGSGK++
Sbjct: 86  SFDRVFPPGSGQDEVFEEIA-MLVQSALDGYPVCIFAYGQTGSGKTF 131

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 28/182 (15%), Positives = 50/182 (27%), Gaps = 60/182 (32%)

Query: 82  IMRSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRRE------------ 129
           I+    +  V +  +C    V    + +L KE   ++  I +S D               
Sbjct: 21  ILSVFEDAFVDN-FDCK--DVQDMPKSILSKE---EIDHIIMSKDAVSGTLRLFWTLLSK 74

Query: 130 ------MKVNDN-AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNG------YNVC- 175
                   V +    +Y F +   +  +  Q S+ T +     D  +N       YNV  
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSP-IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133

Query: 176 -------------------LFAYGQTGSGKSYRGDSTLNSSVLRPRVL---FYPGFSWSH 213
                              +   G  GSGK     + +   V     +         W +
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGK-----TWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 214 SG 215
             
Sbjct: 189 LK 190

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	100.0
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	100.0
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	100.0
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	100.0
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	100.0
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	100.0
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	100.0
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	100.0
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	100.0
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	100.0
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	100.0
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	100.0
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	100.0
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	100.0
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	100.0
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	100.0
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	100.0
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	100.0
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	100.0
3u06_A	412	Protein claret segregational; motor domain, stalk	100.0
3nwn_A	359	Kinesin-like protein KIF9; motor domain, ADP, stru	100.0
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	100.0
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	100.0
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	100.0
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	100.0
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	100.0
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	100.0
4h1g_A	715	Maltose binding protein-cakar3 motor domain fusio;	100.0
2o0a_A	298	S.cerevisiae chromosome XVI reading frame ORF YPL2	99.94
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	93.88
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	92.67
2qgz_A	308	Helicase loader, putative primosome component; str	91.67
4etp_B	333	Spindle POLE BODY-associated protein VIK1; kinesin	89.72
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	88.58
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	87.44
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	86.4
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	84.61
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	84.0
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	83.93
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	83.72
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	83.69
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	83.4
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	83.0
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	82.82
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	81.7
3dkp_A	245	Probable ATP-dependent RNA helicase DDX52; DEAD, A	81.37
3bor_A	237	Human initiation factor 4A-II; translation initiat	81.06
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	80.23

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}

Probab=100.00  E-value=3.8e-45  Score=335.55  Aligned_cols=167  Identities=22%  Similarity=0.298  Sum_probs=146.4

Q ss_pred             CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCC----------CCceeeeeceeeCCCCCcchhhcccchhh
Q psy17370         96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDN----------AKSYTFKLDHCLGQDTDQTSVFTIIAQPL  164 (262)
Q Consensus        96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~----------~~~~~f~FD~vf~~~~~q~~vy~~~~~pl  164 (262)
                      ..++|+|+||+||++.+|.. +...++.+.++...+.+...          ...+.|+||+||+++++|++||+.+++|+
T Consensus         2 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~pl   81 (350)
T 2vvg_A            2 SSDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPL   81 (350)
T ss_dssp             --CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHH
T ss_pred             CCCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHH
Confidence            46799999999999999976 66677887765555544331          25789999999999999999999999999


Q ss_pred             HhhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccC----ccceEEEEEEEEEE---EEecCC--CCc
Q psy17370        165 LDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWS----HSGWTGWVSCVVVI---AVDFGC--GSW  235 (262)
Q Consensus       165 v~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~----~~~~~~~vS~~EIy---l~Dll~--~~l  235 (262)
                      |+.+|+|||+||||||||||||||||+|+.+++|||||++++||..++    ...|.+++||+|||   |+|||.  .+|
T Consensus        82 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~l  161 (350)
T 2vvg_A           82 IDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKL  161 (350)
T ss_dssp             HHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTTEEEE
T ss_pred             HHHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccCCcCc
Confidence            999999999999999999999999999999999999999999999875    35899999999999   999996  568


Q ss_pred             eeeecCCCcEEEcCceEEecCChhhhC
Q psy17370        236 RFESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       236 ~i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      +|+||+.+++||.|++++.|.+.+|++
T Consensus       162 ~i~e~~~~~~~v~gl~~~~v~s~~e~~  188 (350)
T 2vvg_A          162 PLKEDKTRGIYVDGLSMHRVTTAAELS  188 (350)
T ss_dssp             CEEEETTTEEEETTCCCEEESSHHHHH
T ss_pred             eeeEcCCCCEEecCCEEEEcCCHHHHH
Confidence            999999999999999999999999974

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.8e-44  Score=331.12  Aligned_cols=165  Identities=24%  Similarity=0.323  Sum_probs=144.5

Q ss_pred             CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCce
Q psy17370         96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNV  174 (262)
Q Consensus        96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~  174 (262)
                      +.++|+|+||+||++..|.. ++..++.+..+...+....  ..+.|.||+||+++++|++||+.+++|+|+.+|+|||+
T Consensus         2 e~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~--~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~   79 (349)
T 1t5c_A            2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVD--GSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNG   79 (349)
T ss_dssp             -CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEETT--SSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCE
T ss_pred             CCCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEECC--CCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCcc
Confidence            46899999999999999976 4444444433333343322  46799999999999999999999999999999999999


Q ss_pred             eEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc---cceEEEEEEEEEE---EEecCC-----CCceeeecCCC
Q psy17370        175 CLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH---SGWTGWVSCVVVI---AVDFGC-----GSWRFESKPSH  243 (262)
Q Consensus       175 ~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~---~~~~~~vS~~EIy---l~Dll~-----~~l~i~ed~~~  243 (262)
                      ||||||||||||||||+|..+++|||||++++||..+++   .+|.|+|||+|||   |+|||.     .+|.|+||+++
T Consensus        80 tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ed~~~  159 (349)
T 1t5c_A           80 TIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNR  159 (349)
T ss_dssp             EEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEEEETTTT
T ss_pred             ceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceEEECCCC
Confidence            999999999999999999999999999999999998864   5899999999999   999994     46899999999


Q ss_pred             cEEEcCceEEecCChhhhC
Q psy17370        244 EIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       244 ~v~v~gl~~~~V~s~~e~l  262 (262)
                      ++||.|++++.|.+.+|++
T Consensus       160 ~~~v~gl~~~~v~s~~e~~  178 (349)
T 1t5c_A          160 NVYVADLTEEVVYTSEMAL  178 (349)
T ss_dssp             EEEETTCCCEECSSHHHHH
T ss_pred             CEEecCCEEEEeCCHHHHH
Confidence            9999999999999999974

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=1.7e-44  Score=332.10  Aligned_cols=167  Identities=21%  Similarity=0.245  Sum_probs=144.4

Q ss_pred             CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCC--------------------CCceeeeeceeeCCCCCcc
Q psy17370         96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDN--------------------AKSYTFKLDHCLGQDTDQT  154 (262)
Q Consensus        96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~--------------------~~~~~f~FD~vf~~~~~q~  154 (262)
                      ..++|+|+||+||++.+|.. +...++.+.++...+..+..                    ...+.|.||+||+++++|+
T Consensus         8 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~   87 (355)
T 3lre_A            8 LCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQS   87 (355)
T ss_dssp             ----CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCCHH
T ss_pred             ccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCChH
Confidence            37899999999999999977 66777777665554433221                    1456899999999999999


Q ss_pred             hhhcccchhhHhhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc----cceEEEEEEEEEE---E
Q psy17370        155 SVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---A  227 (262)
Q Consensus       155 ~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l  227 (262)
                      +||+.+++|+|+.+|+|||+||||||||||||||||+|+..++|||||++++||..+++    ..+.++|||+|||   |
T Consensus        88 ~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYnE~i  167 (355)
T 3lre_A           88 EVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQI  167 (355)
T ss_dssp             HHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEETTEE
T ss_pred             HHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEECCEE
Confidence            99999999999999999999999999999999999999999999999999999987753    4789999999999   9


Q ss_pred             EecCC--CCceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370        228 VDFGC--GSWRFESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       228 ~Dll~--~~l~i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      +|||.  .+|.++||+.+++||.|++++.|.+.+|++
T Consensus       168 ~DLL~~~~~l~ire~~~~~~~v~gl~~~~v~s~~e~~  204 (355)
T 3lre_A          168 RDLLVNSGPLAVREDTQKGVVVHGLTLHQPKSSEEIL  204 (355)
T ss_dssp             EESSSCCCCBEEEECTTSCEEEETCCCBCCCSHHHHH
T ss_pred             EECcCCCCCceeEEcCCCCEEeeeeeEEecCCHHHHH
Confidence            99984  679999999999999999999999999974

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}

Probab=100.00  E-value=2e-44  Score=339.81  Aligned_cols=167  Identities=25%  Similarity=0.350  Sum_probs=146.2

Q ss_pred             CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCC----------------CCceeeeeceeeCC-------CC
Q psy17370         96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDN----------------AKSYTFKLDHCLGQ-------DT  151 (262)
Q Consensus        96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~----------------~~~~~f~FD~vf~~-------~~  151 (262)
                      ..++|+|+|||||++.+|.. +..+++.+++....+.+...                ...+.|+||+||++       .+
T Consensus        36 ~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~a  115 (443)
T 2owm_A           36 PGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHYA  115 (443)
T ss_dssp             CCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTCC
T ss_pred             CCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCccCC
Confidence            46799999999999999976 66778888765443332111                14689999999965       48


Q ss_pred             CcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc-------cceEEEEEEEE
Q psy17370        152 DQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-------SGWTGWVSCVV  224 (262)
Q Consensus       152 ~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-------~~~~~~vS~~E  224 (262)
                      +|++||+.+++|||+.+|+|||+||||||||||||||||+|..+++|||||++++||..++.       .+|.|+|||+|
T Consensus       116 sQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~lE  195 (443)
T 2owm_A          116 TQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFE  195 (443)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEEEE
T ss_pred             CHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999987753       47899999999


Q ss_pred             EE---EEecCCC--------CceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370        225 VI---AVDFGCG--------SWRFESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       225 Iy---l~Dll~~--------~l~i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      ||   |+|||..        .|+|+||+.+++||.||+++.|.+.+|++
T Consensus       196 IYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~  244 (443)
T 2owm_A          196 VYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEII  244 (443)
T ss_dssp             EETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHH
T ss_pred             EECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHH
Confidence            99   9999953        49999999999999999999999999974

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.8e-44  Score=332.17  Aligned_cols=169  Identities=20%  Similarity=0.236  Sum_probs=133.8

Q ss_pred             CCCCCCeEEEEEeCCCCccccC-CCcceEEEcCCc-eEEEEcC-CCCceeeeeceeeCCCCCcchhhcccchhhHhhhhC
Q psy17370         94 NLECSRMTVAVRIRPLLVKELH-MDVSSIEISPDR-REMKVND-NAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFN  170 (262)
Q Consensus        94 ~~~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~-~~i~~~~-~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~  170 (262)
                      ....++|+|+||+||++..|.. +...++...++. ..+.... ....+.|+||+||+++++|++||+.+++|+|+.+|+
T Consensus        17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~   96 (388)
T 3bfn_A           17 QGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLE   96 (388)
T ss_dssp             SSCCCCCEEEEEECCCC-----------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHTT
T ss_pred             cCCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhhc
Confidence            3457899999999999999876 334444433322 2222221 225789999999999999999999999999999999


Q ss_pred             CCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc-------cceEEEEEEEEEE---EEecCC---CCcee
Q psy17370        171 GYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-------SGWTGWVSCVVVI---AVDFGC---GSWRF  237 (262)
Q Consensus       171 G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-------~~~~~~vS~~EIy---l~Dll~---~~l~i  237 (262)
                      |||+||||||||||||||||+|+.+++|||||++++||..+.+       ..|.|+|||+|||   |+|||.   .+|.|
T Consensus        97 G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~l~i  176 (388)
T 3bfn_A           97 GQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVI  176 (388)
T ss_dssp             TCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSCBCCC
T ss_pred             CceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCCCCceE
Confidence            9999999999999999999999999999999999999987753       3688999999999   999985   57999


Q ss_pred             eecCCCcEEEcCceEEecCChhhhC
Q psy17370        238 ESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       238 ~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      +||+.+++||.|++++.|.+.+|++
T Consensus       177 red~~~~v~v~gl~~~~V~s~~e~~  201 (388)
T 3bfn_A          177 REDCRGNILIPGLSQKPISSFADFE  201 (388)
T ss_dssp             EECTTSCEECTTCCCEECCSHHHHH
T ss_pred             EEcCCCCEEeccceEEEeCCHHHHH
Confidence            9999999999999999999999974

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*

Probab=100.00  E-value=5e-44  Score=327.95  Aligned_cols=164  Identities=29%  Similarity=0.388  Sum_probs=147.4

Q ss_pred             CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCce
Q psy17370         96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNV  174 (262)
Q Consensus        96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~  174 (262)
                      ++++|+|+||+||++.+|.. +...++.+.++...+...   ..+.|.||+||+++++|++||+.+++|+|+.+|+|||+
T Consensus         9 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~---~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~   85 (344)
T 4a14_A            9 EEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLG---RDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNA   85 (344)
T ss_dssp             CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEET---TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCE
T ss_pred             cccceEEEEEecccchHHHhccCeeEEEEcCCCceEEec---ccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCe
Confidence            57899999999999999876 666777777766666553   47899999999999999999999999999999999999


Q ss_pred             eEeeeeccCCCCceecCCCC------CCCchHhhhhhccccccCc---cceEEEEEEEEEE---EEecCC-----CCcee
Q psy17370        175 CLFAYGQTGSGKSYRGDSTL------NSSVLRPRVLFYPGFSWSH---SGWTGWVSCVVVI---AVDFGC-----GSWRF  237 (262)
Q Consensus       175 ~ifaYG~tgSGKTyTm~G~~------~~~Giipr~~~~lf~~~~~---~~~~~~vS~~EIy---l~Dll~-----~~l~i  237 (262)
                      ||||||||||||||||+|..      +++|||||++++||..+++   .+|.|+|||+|||   |+|||.     .+|+|
T Consensus        86 tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i  165 (344)
T 4a14_A           86 TVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQL  165 (344)
T ss_dssp             EEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETTSSCCCGGGCEE
T ss_pred             eEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHHHhcccccccee
Confidence            99999999999999999984      7899999999999998864   4899999999999   999994     56899


Q ss_pred             eecCCCcEEEcCceEEecCChhhhC
Q psy17370        238 ESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       238 ~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      +||+++++||.|++++.|.+.+|++
T Consensus       166 ~e~~~~~~~v~gl~~~~v~s~~e~~  190 (344)
T 4a14_A          166 REDERGNVVLCGVKEVDVEGLDEVL  190 (344)
T ss_dssp             EECTTSCEEEESCCCEECCSHHHHH
T ss_pred             eeccCCCEEEEeeeeccccCHHHHH
Confidence            9999999999999999999999974

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*

Probab=100.00  E-value=6.7e-44  Score=324.58  Aligned_cols=162  Identities=21%  Similarity=0.214  Sum_probs=144.9

Q ss_pred             CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCce
Q psy17370         96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNV  174 (262)
Q Consensus        96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~  174 (262)
                      .+++|+|+||+||++..|.. ++..++.+.++...+.     ..+.|.||+||+++++|++||+.+++|+|+.+|+|||+
T Consensus         5 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~-----~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~   79 (325)
T 1bg2_A            5 AECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI-----ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNG   79 (325)
T ss_dssp             SSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEE-----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCE
T ss_pred             CCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEE-----CCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeE
Confidence            47899999999999999977 6666777766555433     46789999999999999999999999999999999999


Q ss_pred             eEeeeeccCCCCceecCCCC---CCCchHhhhhhccccccC----ccceEEEEEEEEEE---EEecCC---CCceeeecC
Q psy17370        175 CLFAYGQTGSGKSYRGDSTL---NSSVLRPRVLFYPGFSWS----HSGWTGWVSCVVVI---AVDFGC---GSWRFESKP  241 (262)
Q Consensus       175 ~ifaYG~tgSGKTyTm~G~~---~~~Giipr~~~~lf~~~~----~~~~~~~vS~~EIy---l~Dll~---~~l~i~ed~  241 (262)
                      ||||||||||||||||+|..   ...|||||++++||..+.    ..+|.|+|||+|||   |+|||.   .+|+++||+
T Consensus        80 tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l~i~e~~  159 (325)
T 1bg2_A           80 TIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDK  159 (325)
T ss_dssp             EEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCSBCEEECT
T ss_pred             EEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCCCceEEECC
Confidence            99999999999999999975   456999999999998774    35899999999999   999984   679999999


Q ss_pred             CCcEEEcCceEEecCChhhhC
Q psy17370        242 SHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       242 ~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      ++++||.|++++.|.+.+|++
T Consensus       160 ~~~~~v~gl~~~~v~s~~e~~  180 (325)
T 1bg2_A          160 NRVPYVKGCTERFVCSPDEVM  180 (325)
T ss_dssp             TSCEEETTCCCEEECSHHHHH
T ss_pred             CCCEEecCceEEeCCCHHHHH
Confidence            999999999999999999974

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*

Probab=100.00  E-value=8e-44  Score=328.79  Aligned_cols=167  Identities=20%  Similarity=0.281  Sum_probs=147.0

Q ss_pred             CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCC-----CCceeeeeceeeCCCCCcchhhcccchhhHhhhh
Q psy17370         96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDN-----AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAF  169 (262)
Q Consensus        96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~-----~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l  169 (262)
                      ..++|+|+||+||++..|.. +...++.+..+...+.+...     ...+.|+||+||+++++|++||+.+++|+|+.+|
T Consensus        19 ~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l   98 (372)
T 3b6u_A           19 SSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVL   98 (372)
T ss_dssp             --CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHHHH
T ss_pred             CCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHHHh
Confidence            47899999999999999876 66677888766555555332     2568999999999999999999999999999999


Q ss_pred             CCCceeEeeeeccCCCCceecCCCC---CCCchHhhhhhccccccCc---cceEEEEEEEEEE---EEecCC----CCce
Q psy17370        170 NGYNVCLFAYGQTGSGKSYRGDSTL---NSSVLRPRVLFYPGFSWSH---SGWTGWVSCVVVI---AVDFGC----GSWR  236 (262)
Q Consensus       170 ~G~n~~ifaYG~tgSGKTyTm~G~~---~~~Giipr~~~~lf~~~~~---~~~~~~vS~~EIy---l~Dll~----~~l~  236 (262)
                      +|||+||||||||||||||||+|..   +++|||||++++||..++.   .+|.|+|||+|||   |+|||.    ..|+
T Consensus        99 ~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~  178 (372)
T 3b6u_A           99 QGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLE  178 (372)
T ss_dssp             TTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCTTCCBC
T ss_pred             CCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCCCCCce
Confidence            9999999999999999999999975   5679999999999998753   5899999999999   999995    4689


Q ss_pred             eeecCCCcEEEcCceEEecCChhhhC
Q psy17370        237 FESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       237 i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      |+||+++++||.|++++.|.+.+|++
T Consensus       179 i~e~~~~~v~v~gl~~~~v~s~~e~~  204 (372)
T 3b6u_A          179 LKERPDTGVYVKDLSSFVTKSVKEIE  204 (372)
T ss_dssp             EEEETTTEEEETTCCCEECCSHHHHH
T ss_pred             EEECCCCcEecCCCEEEEecCHHHHH
Confidence            99999999999999999999999974

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9

Probab=100.00  E-value=1.2e-43  Score=326.33  Aligned_cols=165  Identities=24%  Similarity=0.328  Sum_probs=147.8

Q ss_pred             CCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCcee
Q psy17370         97 CSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVC  175 (262)
Q Consensus        97 ~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~  175 (262)
                      .++|+|+||+||++..|.. +..++|.+.++... .+......+.|+||+||+++++|++||+.+++|+|+.+|+|||+|
T Consensus         5 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~-~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~t   83 (355)
T 1goj_A            5 ANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTC-TVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGT   83 (355)
T ss_dssp             SCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEE-EECSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEE
T ss_pred             CCCeEEEEECCCCChHHhhcCCceEEEEcCCCeE-EEccCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcce
Confidence            5799999999999999987 66778888776653 344445678999999999999999999999999999999999999


Q ss_pred             EeeeeccCCCCceecCCCC----CCCchHhhhhhccccccCc----cceEEEEEEEEEE---EEecCC---CCceeeecC
Q psy17370        176 LFAYGQTGSGKSYRGDSTL----NSSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---AVDFGC---GSWRFESKP  241 (262)
Q Consensus       176 ifaYG~tgSGKTyTm~G~~----~~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l~Dll~---~~l~i~ed~  241 (262)
                      |||||||||||||||+|..    +++|||||++++||..+..    .+|.|+|||+|||   |+|||.   .+|+|+||+
T Consensus        84 ifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e~~  163 (355)
T 1goj_A           84 VFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEK  163 (355)
T ss_dssp             EEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSCCEEEET
T ss_pred             EEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccCCceeEEcC
Confidence            9999999999999999963    6789999999999987753    4799999999999   999985   579999999


Q ss_pred             CCcEEEcCceEEecCChhhhC
Q psy17370        242 SHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       242 ~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      .+++||.|++++.|.+.+|++
T Consensus       164 ~~g~~v~gl~~~~v~s~~e~~  184 (355)
T 1goj_A          164 NRGVYVKGLLEIYVSSVQEVY  184 (355)
T ss_dssp             TTEEEETTCCCEECCSHHHHH
T ss_pred             CCCEeecCCEEEeCCCHHHHH
Confidence            999999999999999999974

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*

Probab=100.00  E-value=5.7e-44  Score=329.78  Aligned_cols=167  Identities=25%  Similarity=0.366  Sum_probs=147.0

Q ss_pred             CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCC--CceeeeeceeeCCC--------CCcchhhcccchhh
Q psy17370         96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNA--KSYTFKLDHCLGQD--------TDQTSVFTIIAQPL  164 (262)
Q Consensus        96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~--~~~~f~FD~vf~~~--------~~q~~vy~~~~~pl  164 (262)
                      ..++|+|+||+||++.+|.. +..+++.+.++...+..+...  ..+.|+||+||+++        ++|++||+.+++|+
T Consensus         2 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~pl   81 (366)
T 2zfi_A            2 AGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEM   81 (366)
T ss_dssp             --CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHH
T ss_pred             CCCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHH
Confidence            35689999999999999976 667788888776655444322  57899999999887        89999999999999


Q ss_pred             HhhhhCCCceeEeeeeccCCCCceecCCCC--CCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecCC--
Q psy17370        165 LDAAFNGYNVCLFAYGQTGSGKSYRGDSTL--NSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFGC--  232 (262)
Q Consensus       165 v~~~l~G~n~~ifaYG~tgSGKTyTm~G~~--~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll~--  232 (262)
                      |+.+|+|||+||||||||||||||||+|..  .++|||||++++||..+++     ..|.|+|||+|||   |+|||.  
T Consensus        82 v~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~  161 (366)
T 2zfi_A           82 LQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK  161 (366)
T ss_dssp             HHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTT
T ss_pred             HHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEccccc
Confidence            999999999999999999999999999985  6789999999999998753     3789999999999   999995  


Q ss_pred             --CCceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370        233 --GSWRFESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       233 --~~l~i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                        .+|+|+||+.+++||.|++++.|.+.+|++
T Consensus       162 ~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~  193 (366)
T 2zfi_A          162 NKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQ  193 (366)
T ss_dssp             TCSCBCEEEETTTEEEETTCCCEECCSHHHHH
T ss_pred             cCCCceEEEcCCCCEEEeCCEEEEECCHHHHH
Confidence              469999999999999999999999999974

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}

Probab=100.00  E-value=2.4e-43  Score=321.49  Aligned_cols=165  Identities=22%  Similarity=0.361  Sum_probs=140.5

Q ss_pred             CCCeEEEEEeCCCCccccC--CCcceEEEcC-CceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCc
Q psy17370         97 CSRMTVAVRIRPLLVKELH--MDVSSIEISP-DRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYN  173 (262)
Q Consensus        97 ~~~IkV~vRiRP~~~~E~~--~~~~~i~~~~-~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n  173 (262)
                      +++|+|+||+||++..|..  ....++.++. +...+........+.|.||+||+++++|++||+.+ .|+|+.+|+|||
T Consensus         3 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G~n   81 (330)
T 2h58_A            3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQEV-QALVTSCIDGFN   81 (330)
T ss_dssp             --CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEETTEEEEEECSEEECTTCCHHHHHTTT-HHHHHHHHTTCC
T ss_pred             CCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCCCCeeEEecCeEeCCCCCcHhHHHHH-HHHHHHHhCCCE
Confidence            5799999999999999875  2334566654 33444444445678999999999999999999984 899999999999


Q ss_pred             eeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc----cceEEEEEEEEEE---EEecCC----CCceee--ec
Q psy17370        174 VCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---AVDFGC----GSWRFE--SK  240 (262)
Q Consensus       174 ~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l~Dll~----~~l~i~--ed  240 (262)
                      +||||||||||||||||+|+.+++|||||++++||..+++    .+|.|+|||+|||   |+|||.    .++.|+  +|
T Consensus        82 ~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~~~  161 (330)
T 2h58_A           82 VCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPD  161 (330)
T ss_dssp             EEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCCEECTT
T ss_pred             EEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccccceEEEeec
Confidence            9999999999999999999999999999999999998864    3799999999999   999995    235555  57


Q ss_pred             CCCcEEEcCceEEecCChhhhC
Q psy17370        241 PSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       241 ~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      ..+++||.|++++.|.+.+|++
T Consensus       162 ~~~~~~v~gl~~~~v~s~~e~~  183 (330)
T 2h58_A          162 GSGQLYVPGLTEFQVQSVDDIN  183 (330)
T ss_dssp             SSCCEECTTCCCEEECSHHHHH
T ss_pred             CCCCEecCCCEEEEeCCHHHHH
Confidence            7899999999999999999974

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...

Probab=100.00  E-value=1.8e-43  Score=325.68  Aligned_cols=167  Identities=26%  Similarity=0.385  Sum_probs=144.0

Q ss_pred             CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcC-----CCCceeeeeceeeCCCCCcchhhcccchhhHhhhh
Q psy17370         96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVND-----NAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAF  169 (262)
Q Consensus        96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~-----~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l  169 (262)
                      ..++|+|+||+||++..|.. +...++.+.+....+.+..     ....+.|+||+||+++++|++||+.+++|+|+.+|
T Consensus         6 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l   85 (359)
T 1x88_A            6 KGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVI   85 (359)
T ss_dssp             ---CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHHh
Confidence            47899999999999999876 6667788877655544322     12568999999999999999999999999999999


Q ss_pred             CCCceeEeeeeccCCCCceecCCCCC-----------CCchHhhhhhccccccCc--cceEEEEEEEEEE---EEecCC-
Q psy17370        170 NGYNVCLFAYGQTGSGKSYRGDSTLN-----------SSVLRPRVLFYPGFSWSH--SGWTGWVSCVVVI---AVDFGC-  232 (262)
Q Consensus       170 ~G~n~~ifaYG~tgSGKTyTm~G~~~-----------~~Giipr~~~~lf~~~~~--~~~~~~vS~~EIy---l~Dll~-  232 (262)
                      +|||+||||||||||||||||+|...           .+|||||++++||..+.+  .+|.|+|||+|||   |+|||. 
T Consensus        86 ~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~DLL~~  165 (359)
T 1x88_A           86 MGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNP  165 (359)
T ss_dssp             TTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSSSEEEEEEEEEEEEETTEEEETTCT
T ss_pred             CCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhccCceEEEEEEEEEEeCceeeehhcc
Confidence            99999999999999999999999763           369999999999998875  4788999999999   999995 


Q ss_pred             -----CCceeeecCC--CcEEEcCceEEecCChhhhC
Q psy17370        233 -----GSWRFESKPS--HEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       233 -----~~l~i~ed~~--~~v~v~gl~~~~V~s~~e~l  262 (262)
                           ..|++++|+.  +++||.|++++.|.+.+|+|
T Consensus       166 ~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~  202 (359)
T 1x88_A          166 SSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVY  202 (359)
T ss_dssp             TSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHH
T ss_pred             cccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHH
Confidence                 3589999974  79999999999999999975

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*

Probab=100.00  E-value=1.6e-43  Score=327.96  Aligned_cols=168  Identities=22%  Similarity=0.254  Sum_probs=142.3

Q ss_pred             CCCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEE-cCCC-------CceeeeeceeeCCCCCcchhhcccchhhH
Q psy17370         95 LECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKV-NDNA-------KSYTFKLDHCLGQDTDQTSVFTIIAQPLL  165 (262)
Q Consensus        95 ~~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~-~~~~-------~~~~f~FD~vf~~~~~q~~vy~~~~~plv  165 (262)
                      .++++|+|+||+||++..|.. +...+|.+.++...+.. +...       ..+.|+||+||+++++|++||+.+++|||
T Consensus        48 ~~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv  127 (387)
T 2heh_A           48 IEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLV  127 (387)
T ss_dssp             CCCCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred             CCCCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHH
Confidence            347899999999999999876 55566777655443322 2111       35789999999999999999999999999


Q ss_pred             hhhhCCCceeEeeeeccCCCCceecCCCC------CCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecC
Q psy17370        166 DAAFNGYNVCLFAYGQTGSGKSYRGDSTL------NSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFG  231 (262)
Q Consensus       166 ~~~l~G~n~~ifaYG~tgSGKTyTm~G~~------~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll  231 (262)
                      +.+|+|||+||||||||||||||||+|+.      .++|||||++++||..++.     ..|.|+|||+|||   |+|||
T Consensus       128 ~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL  207 (387)
T 2heh_A          128 QTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLL  207 (387)
T ss_dssp             HHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETT
T ss_pred             HHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECC
Confidence            99999999999999999999999999963      5799999999999988864     4799999999999   99999


Q ss_pred             C--CCceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370        232 C--GSWRFESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       232 ~--~~l~i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      .  .+|+|+||+++++||.|++++.|.+.+|++
T Consensus       208 ~~~~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~  240 (387)
T 2heh_A          208 NKKAKLRVLEDGKQQVQVVGLQEHLVNSADDVI  240 (387)
T ss_dssp             TTTEECEEEECTTCCEEEETCCCEEESSHHHHH
T ss_pred             CCCccceEEEcCCCCEEecCCEEEEeCCHHHHH
Confidence            6  468999999999999999999999999974

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*

Probab=100.00  E-value=3.5e-43  Score=324.37  Aligned_cols=164  Identities=24%  Similarity=0.310  Sum_probs=142.6

Q ss_pred             CCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEc-CCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCce
Q psy17370         97 CSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVN-DNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNV  174 (262)
Q Consensus        97 ~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~-~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~  174 (262)
                      +++|+|+||+||++..|.. +...++.. .+...+..+ .....+.|.||+||+++++|++||+. +.|+|+.+|+|||+
T Consensus         4 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~-~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n~   81 (369)
T 3cob_A            4 KGKIRVYCRLRPLCEKEIIAKERNAIRS-VDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNV   81 (369)
T ss_dssp             CCBCEEEEEECCCCHHHHHTTCCBCEEE-CSSSEEEEECTTSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEE
T ss_pred             CCCeEEEEECCCCChhhccCCCcEEEEc-CCcEEEEecCCCCCceEEecCEEECCCCCcceehhh-hhhhhHhhhcCCce
Confidence            6799999999999999866 33333333 344444443 33366899999999999999999999 68999999999999


Q ss_pred             eEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc----cceEEEEEEEEEE---EEecCC------CCceeeecC
Q psy17370        175 CLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---AVDFGC------GSWRFESKP  241 (262)
Q Consensus       175 ~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l~Dll~------~~l~i~ed~  241 (262)
                      ||||||||||||||||+|+..++|||||++++||..+..    ..|.+++||+|||   |+|||.      ..|.|++|+
T Consensus        82 tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~e~~  161 (369)
T 3cob_A           82 CIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDS  161 (369)
T ss_dssp             EEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEEECT
T ss_pred             EEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCcceEEEECC
Confidence            999999999999999999999999999999999998764    4799999999999   999995      468999999


Q ss_pred             CCcEEEcCceEEecCChhhhC
Q psy17370        242 SHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       242 ~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      ++++||.|++++.|.+.+|++
T Consensus       162 ~~~~~v~gl~~~~v~s~~e~~  182 (369)
T 3cob_A          162 KGMVSVENVTVVSISTYEELK  182 (369)
T ss_dssp             TSCEEEETCCCEEECSHHHHH
T ss_pred             CCCEEccCCEEEEeCCHHHHH
Confidence            999999999999999999974

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*

Probab=100.00  E-value=5.1e-43  Score=323.01  Aligned_cols=163  Identities=18%  Similarity=0.210  Sum_probs=144.1

Q ss_pred             CCCCeEEEEEeCCCCccccC-CCcceEEEcCC--ceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCC
Q psy17370         96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPD--RREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGY  172 (262)
Q Consensus        96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~--~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~  172 (262)
                      .+++|+|+||+||++..|.. +...++.+.++  ...+..    ..+.|+||+||+++++|++||+.+++|+|+.+|+||
T Consensus         9 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~----~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~   84 (365)
T 2y65_A            9 AEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI----AGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGY   84 (365)
T ss_dssp             CEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTC
T ss_pred             CCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE----CCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCC
Confidence            46799999999999999876 55566666553  334443    468999999999999999999999999999999999


Q ss_pred             ceeEeeeeccCCCCceecCCCC---CCCchHhhhhhccccccCc----cceEEEEEEEEEE---EEecCC---CCceeee
Q psy17370        173 NVCLFAYGQTGSGKSYRGDSTL---NSSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---AVDFGC---GSWRFES  239 (262)
Q Consensus       173 n~~ifaYG~tgSGKTyTm~G~~---~~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l~Dll~---~~l~i~e  239 (262)
                      |+||||||||||||||||+|..   .++|||||++++||..+..    .+|.|+|||+|||   |+|||.   .+|.++|
T Consensus        85 n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e  164 (365)
T 2y65_A           85 NGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHE  164 (365)
T ss_dssp             CEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCCSBCEEE
T ss_pred             ceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCcCCceEEE
Confidence            9999999999999999999875   4679999999999988753    4899999999999   999985   5799999


Q ss_pred             cCCCcEEEcCceEEecCChhhhC
Q psy17370        240 KPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       240 d~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      |+.+++||.|++++.|.+.+|++
T Consensus       165 ~~~~~~~v~gl~~~~V~s~~e~~  187 (365)
T 2y65_A          165 DKNRVPYVKGATERFVSSPEDVF  187 (365)
T ss_dssp             CSSSCEEETTCCCEEECSHHHHH
T ss_pred             CCCCCEEecCCEEEecCCHHHHH
Confidence            99999999999999999999974

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9

Probab=100.00  E-value=2.4e-43  Score=324.37  Aligned_cols=165  Identities=27%  Similarity=0.404  Sum_probs=137.7

Q ss_pred             CCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcC--------CCCceeeeeceee--------CCCCCcchhhccc
Q psy17370         98 SRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVND--------NAKSYTFKLDHCL--------GQDTDQTSVFTII  160 (262)
Q Consensus        98 ~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~--------~~~~~~f~FD~vf--------~~~~~q~~vy~~~  160 (262)
                      .+|+|+|||||++.+|.. +..+++.++++...+..+.        ....+.|+||+||        ++.++|++||+.+
T Consensus         1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~   80 (354)
T 3gbj_A            1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCL   80 (354)
T ss_dssp             -CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHH
T ss_pred             CCcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHh
Confidence            379999999999999987 6777788876654432211        1256889999999        5678999999999


Q ss_pred             chhhHhhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccC-----ccceEEEEEEEEEE---EEecCC
Q psy17370        161 AQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWS-----HSGWTGWVSCVVVI---AVDFGC  232 (262)
Q Consensus       161 ~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~-----~~~~~~~vS~~EIy---l~Dll~  232 (262)
                      +.|+|+.+|+|||+||||||||||||||||+|..+++|||||++++||..+.     ...|.|+|||+|||   |+|||.
T Consensus        81 ~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~  160 (354)
T 3gbj_A           81 GENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLD  160 (354)
T ss_dssp             HHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC
T ss_pred             hHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccC
Confidence            9999999999999999999999999999999999999999999999998764     24689999999999   999995


Q ss_pred             -----CCceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370        233 -----GSWRFESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       233 -----~~l~i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                           ..|+|+||+.+++||+|++++.|.+.+|++
T Consensus       161 ~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~  195 (354)
T 3gbj_A          161 PKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIE  195 (354)
T ss_dssp             ------CBCBC------CCBTTCCCEEECSHHHHH
T ss_pred             CCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHH
Confidence                 469999999999999999999999999974

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*

Probab=100.00  E-value=3.2e-43  Score=327.77  Aligned_cols=167  Identities=22%  Similarity=0.237  Sum_probs=145.1

Q ss_pred             CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEE-cCCC-------CceeeeeceeeCCCCCcchhhcccchhhHh
Q psy17370         96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKV-NDNA-------KSYTFKLDHCLGQDTDQTSVFTIIAQPLLD  166 (262)
Q Consensus        96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~-~~~~-------~~~~f~FD~vf~~~~~q~~vy~~~~~plv~  166 (262)
                      ++++|+|+||+||++..|.. +...+|.+.++...+.. +...       ..+.|+||+||+++++|++||+.+++|||+
T Consensus        69 ~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~  148 (410)
T 1v8k_A           69 EEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQ  148 (410)
T ss_dssp             SCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHH
T ss_pred             CCCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHHH
Confidence            47899999999999999876 55667777655544322 2111       357899999999999999999999999999


Q ss_pred             hhhCCCceeEeeeeccCCCCceecCCCC------CCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecCC
Q psy17370        167 AAFNGYNVCLFAYGQTGSGKSYRGDSTL------NSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFGC  232 (262)
Q Consensus       167 ~~l~G~n~~ifaYG~tgSGKTyTm~G~~------~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll~  232 (262)
                      .+|+|||+||||||||||||||||+|+.      .++|||||++++||..++.     ..|.|+|||+|||   |+|||.
T Consensus       149 ~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~  228 (410)
T 1v8k_A          149 TIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN  228 (410)
T ss_dssp             HHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTT
T ss_pred             HHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECCC
Confidence            9999999999999999999999999963      5689999999999988764     4789999999999   999996


Q ss_pred             --CCceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370        233 --GSWRFESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       233 --~~l~i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                        ..|+|+||+.+++||.||+++.|.+.+|++
T Consensus       229 ~~~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~  260 (410)
T 1v8k_A          229 KKAKLRVLEDSRQQVQVVGLQEYLVTCADDVI  260 (410)
T ss_dssp             TTEEEEEEECSSCCEEEETCCCEEESSHHHHH
T ss_pred             CCCCceEEECCCCCeEecCCEEEEeCCHHHHH
Confidence              468999999999999999999999999974

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}

Probab=100.00  E-value=6.1e-43  Score=323.52  Aligned_cols=167  Identities=22%  Similarity=0.334  Sum_probs=145.3

Q ss_pred             CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcC--CCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCC
Q psy17370         96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVND--NAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGY  172 (262)
Q Consensus        96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~--~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~  172 (262)
                      ..++|+|+||+||++..|.. +...++.+.++...+....  ....+.|+||+||+++++|++||+.+++|||+.+|+||
T Consensus        21 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~  100 (373)
T 2wbe_C           21 SNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGY  100 (373)
T ss_dssp             CCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHHHhCCc
Confidence            46799999999999999876 5666777776665544332  22578999999999999999999999999999999999


Q ss_pred             ceeEeeeeccCCCCceecCCCCC-----------CCchHhhhhhccccccC--ccceEEEEEEEEEE---EEecCC----
Q psy17370        173 NVCLFAYGQTGSGKSYRGDSTLN-----------SSVLRPRVLFYPGFSWS--HSGWTGWVSCVVVI---AVDFGC----  232 (262)
Q Consensus       173 n~~ifaYG~tgSGKTyTm~G~~~-----------~~Giipr~~~~lf~~~~--~~~~~~~vS~~EIy---l~Dll~----  232 (262)
                      |+||||||||||||||||+|...           ++|||||++++||..+.  +.+|.|+|||+|||   |+|||.    
T Consensus       101 n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~  180 (373)
T 2wbe_C          101 NCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELCDLLSTDDT  180 (373)
T ss_dssp             CEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEETTEEEESSCTTSC
T ss_pred             eEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhcCceEEEEEEEEEEeCCeEEECCCCCCC
Confidence            99999999999999999999763           78999999999999875  45899999999999   999995    


Q ss_pred             CCceeeecC--CCcEEEcCceEEecCChhhhC
Q psy17370        233 GSWRFESKP--SHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       233 ~~l~i~ed~--~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      .++++++|.  ++++||.|++++.|.+.+|++
T Consensus       181 ~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~  212 (373)
T 2wbe_C          181 TKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVY  212 (373)
T ss_dssp             SCCCEEECSSSSSCEEETTCCCEEESSHHHHH
T ss_pred             CCceeEeccCCCCcEEecCceEEccCCHHHHH
Confidence            457788874  478999999999999999974

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.7e-42  Score=320.53  Aligned_cols=176  Identities=23%  Similarity=0.257  Sum_probs=132.2

Q ss_pred             ccCCccccccCCCCCCeEEEEEeCCCCccccCCCcceEEEc-------CCceEEEEcC-------------CCCceeeee
Q psy17370         84 RSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEIS-------PDRREMKVND-------------NAKSYTFKL  143 (262)
Q Consensus        84 ~~~~~~~~~~~~~~~~IkV~vRiRP~~~~E~~~~~~~i~~~-------~~~~~i~~~~-------------~~~~~~f~F  143 (262)
                      ..+++|..++.  +++|+|+|||||++..|......++.+.       .+...+.+..             ....+.|+|
T Consensus        10 ~~~~hn~~~~~--~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~F   87 (376)
T 2rep_A           10 HSSGLVPRGSL--KGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSF   87 (376)
T ss_dssp             ---------------CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEEC
T ss_pred             cccccchhhcc--CCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeee
Confidence            35667777764  8999999999999999976322122211       2233333221             114568999


Q ss_pred             ceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecCCCC----CCCchHhhhhhccccccCc-----c
Q psy17370        144 DHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTL----NSSVLRPRVLFYPGFSWSH-----S  214 (262)
Q Consensus       144 D~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~----~~~Giipr~~~~lf~~~~~-----~  214 (262)
                      |+||+++++|++||+.+ .++|+.+|+|||+||||||||||||||||+|..    +++|||||++++||..+++     .
T Consensus        88 D~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~  166 (376)
T 2rep_A           88 DRVFPPGSGQDEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGW  166 (376)
T ss_dssp             SEEECTTCCHHHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTE
T ss_pred             cEEcCCcccchhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCe
Confidence            99999999999999985 589999999999999999999999999999975    4789999999999987753     3


Q ss_pred             ceEEEEEEEEEE---EEecCCC--------Cceeeec--CCCcEEEcCceEEecCChhhhC
Q psy17370        215 GWTGWVSCVVVI---AVDFGCG--------SWRFESK--PSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       215 ~~~~~vS~~EIy---l~Dll~~--------~l~i~ed--~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      +|.|+|||+|||   |+|||..        +++|+++  ..++++|.|++++.|.+.+|++
T Consensus       167 ~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~  227 (376)
T 2rep_A          167 TYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVD  227 (376)
T ss_dssp             EEEEEEEEEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHH
T ss_pred             EEEEEEEEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHH
Confidence            789999999999   9999953        5789988  5689999999999999999974

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=100.00  E-value=1.8e-42  Score=323.70  Aligned_cols=178  Identities=24%  Similarity=0.315  Sum_probs=146.9

Q ss_pred             ccccCCccccccCCCCCCeEEEEEeCCCCccccCCCcceEEEcCCceEEEEcCCC------CceeeeeceeeCCCCCcch
Q psy17370         82 IMRSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNA------KSYTFKLDHCLGQDTDQTS  155 (262)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i~~~~~~------~~~~f~FD~vf~~~~~q~~  155 (262)
                      ..|...+|...+.  +++|+|+|||||++..|.....+.+...++..........      ..+.|+||+||+++++|++
T Consensus        45 ~~rr~l~n~~~~l--~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~  122 (412)
T 3u06_A           45 MERKELHNTVMDL--RDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSD  122 (412)
T ss_dssp             HHHHHHHHHHHHH--TCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHH
T ss_pred             HHHHHHHHHHHHh--CCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHH
Confidence            3456677777775  8999999999999998876444555555444432222111      3578999999999999999


Q ss_pred             hhcccchhhHhhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc-----cceEEEEEEEEEE---E
Q psy17370        156 VFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---A  227 (262)
Q Consensus       156 vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l  227 (262)
                      ||+. +.|+|+.+|+|||+||||||||||||||||+|..+++|||||++++||..+..     .+|.|+|||+|||   |
T Consensus       123 Vf~~-v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i  201 (412)
T 3u06_A          123 IFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVL  201 (412)
T ss_dssp             HHTT-THHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEE
T ss_pred             HHHH-HHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCee
Confidence            9986 56999999999999999999999999999999999999999999999998753     4789999999999   9


Q ss_pred             EecCC---CCceee--ecCCCcEEEcCceEEecCChhhhC
Q psy17370        228 VDFGC---GSWRFE--SKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       228 ~Dll~---~~l~i~--ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      +|||.   .++.++  ++..+++||.|++++.|.+.+|++
T Consensus       202 ~DLL~~~~~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~  241 (412)
T 3u06_A          202 YDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLR  241 (412)
T ss_dssp             EETTCCSCCCCCEEECSSCTTSEEETTCCCEECCSHHHHH
T ss_pred             EEcCCCCCCCceeeeeecCCCCEEEcceEEEEeCCHHHHH
Confidence            99995   344455  567789999999999999999874

>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-41  Score=312.88  Aligned_cols=161  Identities=22%  Similarity=0.325  Sum_probs=133.2

Q ss_pred             CCCCeEEEEEeCCCCccccCCCcceEEEcCCceEEEEcC-----------CCCceeeeeceeeCCCCCcchhhcccchhh
Q psy17370         96 ECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVND-----------NAKSYTFKLDHCLGQDTDQTSVFTIIAQPL  164 (262)
Q Consensus        96 ~~~~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i~~~~-----------~~~~~~f~FD~vf~~~~~q~~vy~~~~~pl  164 (262)
                      .+++|+|+||+||+++.|..    .+.+.++...+.+..           ....+.|+||+||+ +++|++||+.+++||
T Consensus        22 ~~~~i~V~vRvRP~~~~e~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~pl   96 (359)
T 3nwn_A           22 TRKKVHAFVRVKPTDDFAHE----MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDV   96 (359)
T ss_dssp             --CCEEEEEEECCCSSCCTT----TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHH
T ss_pred             CCCCEEEEEEcCCCCccccc----ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHH
Confidence            36799999999999876633    344444444443322           22567899999997 689999999999999


Q ss_pred             HhhhhCCCceeEeeeeccCCCCceecCCCC---CCCchHhhhhhccccccCc---cceEEEEEEEEEE---EEecCC---
Q psy17370        165 LDAAFNGYNVCLFAYGQTGSGKSYRGDSTL---NSSVLRPRVLFYPGFSWSH---SGWTGWVSCVVVI---AVDFGC---  232 (262)
Q Consensus       165 v~~~l~G~n~~ifaYG~tgSGKTyTm~G~~---~~~Giipr~~~~lf~~~~~---~~~~~~vS~~EIy---l~Dll~---  232 (262)
                      |+.+|+|||+||||||||||||||||+|..   +++|||||++++||..++.   ..|.|+|||+|||   |+|||.   
T Consensus        97 v~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~  176 (359)
T 3nwn_A           97 VSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLP  176 (359)
T ss_dssp             HHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSSST
T ss_pred             HHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEecccccccccccc
Confidence            999999999999999999999999999976   4589999999999987653   5799999999999   999995   


Q ss_pred             ------CCceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370        233 ------GSWRFESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       233 ------~~l~i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                            ..+.+++++ .|+|+.|++++.|.+.+|++
T Consensus       177 ~~~~~~~~~~~~~~~-~g~~v~~l~~~~v~s~~e~~  211 (359)
T 3nwn_A          177 YVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAF  211 (359)
T ss_dssp             TSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHH
T ss_pred             ccccccccceEEecC-CceEEeccEEEEecCHHHHH
Confidence                  346777774 57999999999999999874

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9

Probab=100.00  E-value=7.5e-42  Score=314.75  Aligned_cols=164  Identities=19%  Similarity=0.159  Sum_probs=133.7

Q ss_pred             CeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCC--------CCceeeeeceeeCCCCCcchhhcccchhhHhhhh
Q psy17370         99 RMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDN--------AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAF  169 (262)
Q Consensus        99 ~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~--------~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l  169 (262)
                      +|+|+||+||++..|.. +...++.+.++...+...+.        ...+.|.||+||+++++|++||+.+++|+|+++|
T Consensus         1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~   80 (360)
T 1ry6_A            1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY   80 (360)
T ss_dssp             CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred             CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence            59999999999999976 55667777665543322111        1357899999999999999999999999999999


Q ss_pred             C-CCceeEeeeeccCCCCceecCCCC-----CCCchHhhhhhccccccC----ccceEEEEEEEEEE---EEecCC--CC
Q psy17370        170 N-GYNVCLFAYGQTGSGKSYRGDSTL-----NSSVLRPRVLFYPGFSWS----HSGWTGWVSCVVVI---AVDFGC--GS  234 (262)
Q Consensus       170 ~-G~n~~ifaYG~tgSGKTyTm~G~~-----~~~Giipr~~~~lf~~~~----~~~~~~~vS~~EIy---l~Dll~--~~  234 (262)
                      + |+||||||||||||||||||+|..     +++|||||++++||..++    +..+.|+|||+|||   |+|||.  ..
T Consensus        81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~  160 (360)
T 1ry6_A           81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKM  160 (360)
T ss_dssp             HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC---
T ss_pred             cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCcc
Confidence            6 999999999999999999999974     689999999999998775    35789999999999   999996  45


Q ss_pred             ceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370        235 WRFESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       235 l~i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      +.++++..+++||.|++++.|.+.+|++
T Consensus       161 ~~~~e~~~~~~~v~gl~~~~V~s~~e~~  188 (360)
T 1ry6_A          161 VAALENGKKEVVVKDLKILRVLTKEELI  188 (360)
T ss_dssp             --------CCBCGGGSCCEEECSHHHHH
T ss_pred             ceeeEcCCCCEEEcCcEEEEeCCHHHHH
Confidence            7788999999999999999999999974

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}

Probab=100.00  E-value=1e-40  Score=306.38  Aligned_cols=163  Identities=24%  Similarity=0.340  Sum_probs=132.5

Q ss_pred             CCCeEEEEEeCCCCccccCC-CcceEEEc---CCceEEEEcCC---CCceeeeeceeeCCCCCcchhhcccchhhHhhhh
Q psy17370         97 CSRMTVAVRIRPLLVKELHM-DVSSIEIS---PDRREMKVNDN---AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAF  169 (262)
Q Consensus        97 ~~~IkV~vRiRP~~~~E~~~-~~~~i~~~---~~~~~i~~~~~---~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l  169 (262)
                      +++|+|+|||||++..|... ...++...   .....+.+...   ...+.|+||+||+++++|++||+.+ .++|+.+|
T Consensus         4 kgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~v-~~lv~~~l   82 (349)
T 3t0q_A            4 RGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEI-RQLVQSSL   82 (349)
T ss_dssp             -CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHHH-HHHHHGGG
T ss_pred             CCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHHH-HHHHHHHH
Confidence            68999999999999998763 22223221   12223333221   2467899999999999999999985 69999999


Q ss_pred             CCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecCC---------
Q psy17370        170 NGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFGC---------  232 (262)
Q Consensus       170 ~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll~---------  232 (262)
                      +|||+||||||||||||||||+|+  +.|||||++++||..+++     .+|.++|||+|||   |+|||.         
T Consensus        83 ~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~  160 (349)
T 3t0q_A           83 DGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNID  160 (349)
T ss_dssp             TTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC---------
T ss_pred             CCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccccccccccc
Confidence            999999999999999999999997  569999999999987653     3788999999999   999984         


Q ss_pred             -----CCceeeecCC-CcEEEcCceEEecCChhhhC
Q psy17370        233 -----GSWRFESKPS-HEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       233 -----~~l~i~ed~~-~~v~v~gl~~~~V~s~~e~l  262 (262)
                           ..+.|+++.. +++||.|++++.|.+.+|++
T Consensus       161 ~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~  196 (349)
T 3t0q_A          161 EILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVD  196 (349)
T ss_dssp             ------CCCEEEETTTTEEEETTCCCEECCCHHHHH
T ss_pred             cccccccceeEEecCCCCEEEeCCEEEEeCCHHHHH
Confidence                 3567887765 68999999999999999974

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*

Probab=100.00  E-value=1.5e-40  Score=304.93  Aligned_cols=163  Identities=23%  Similarity=0.321  Sum_probs=132.4

Q ss_pred             CCCeEEEEEeCCCCccccCCCcceEEEcC-----CceEEEEcC---CCCceeeeeceeeCCCCCcchhhcccchhhHhhh
Q psy17370         97 CSRMTVAVRIRPLLVKELHMDVSSIEISP-----DRREMKVND---NAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAA  168 (262)
Q Consensus        97 ~~~IkV~vRiRP~~~~E~~~~~~~i~~~~-----~~~~i~~~~---~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~  168 (262)
                      +++|+|+||+||++..+...+..++.+..     ....+.+..   ....+.|+||+||+++++|++||+.+ .|+|+.+
T Consensus         2 k~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~   80 (347)
T 1f9v_A            2 RGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQSS   80 (347)
T ss_dssp             -CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHH-HHHHGGG
T ss_pred             CCCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHHH-HHHHHHh
Confidence            57899999999999732222334444432     123333322   23678999999999999999999985 6999999


Q ss_pred             hCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecCCC-------
Q psy17370        169 FNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFGCG-------  233 (262)
Q Consensus       169 l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll~~-------  233 (262)
                      |+|||+||||||||||||||||+|+  ++|||||++++||..+++     .+|.|+|||+|||   |+|||..       
T Consensus        81 l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~  158 (347)
T 1f9v_A           81 LDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKED  158 (347)
T ss_dssp             GGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC--------
T ss_pred             cCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccccc
Confidence            9999999999999999999999996  579999999999988753     3789999999999   9999952       


Q ss_pred             -----CceeeecC-CCcEEEcCceEEecCChhhhC
Q psy17370        234 -----SWRFESKP-SHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       234 -----~l~i~ed~-~~~v~v~gl~~~~V~s~~e~l  262 (262)
                           .+.|+++. .++++|.|++++.|.+.+|++
T Consensus       159 ~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~  193 (347)
T 1f9v_A          159 TSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVE  193 (347)
T ss_dssp             -----CCCEEEETTTTEEEETTCCCEECSSGGGHH
T ss_pred             cccCCceeEEEecCCCceEecCCEEEEcCCHHHHH
Confidence                 36788765 488999999999999999974

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-40  Score=308.53  Aligned_cols=175  Identities=22%  Similarity=0.303  Sum_probs=140.3

Q ss_pred             cccCCccccccCCCCCCeEEEEEeCCCCccccCCCcceEEEcC---C--ceEEEE---cCCCCceeeeeceeeCCCCCcc
Q psy17370         83 MRSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISP---D--RREMKV---NDNAKSYTFKLDHCLGQDTDQT  154 (262)
Q Consensus        83 ~~~~~~~~~~~~~~~~~IkV~vRiRP~~~~E~~~~~~~i~~~~---~--~~~i~~---~~~~~~~~f~FD~vf~~~~~q~  154 (262)
                      .|...+|..++.  +|+|+|+|||||+...+...+...+.+..   .  ...+.+   ......+.|.||+||+++++|+
T Consensus        46 ~rr~l~n~~~el--kgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~  123 (403)
T 4etp_A           46 VRRTLHNELQEL--RGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNV  123 (403)
T ss_dssp             HHHHHHHHHHHH--HCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHH
T ss_pred             HHHHHHHHHHHc--CCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchH
Confidence            355667777765  79999999999998774332333444431   1  122222   2222568999999999999999


Q ss_pred             hhhcccchhhHhhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc-----cceEEEEEEEEEE---
Q psy17370        155 SVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---  226 (262)
Q Consensus       155 ~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---  226 (262)
                      +||+.+ .++|+.+|+|||+||||||||||||||||+|+  +.|||||++++||..++.     ..|.|+|||+|||   
T Consensus       124 ~Vf~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~  200 (403)
T 4etp_A          124 DVFKEV-GQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNEN  200 (403)
T ss_dssp             HHHHHH-HHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTE
T ss_pred             HHHHHH-HHHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecce
Confidence            999985 58999999999999999999999999999997  569999999999987753     3789999999999   


Q ss_pred             EEecCCC------------CceeeecCC-CcEEEcCceEEecCChhhhC
Q psy17370        227 AVDFGCG------------SWRFESKPS-HEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       227 l~Dll~~------------~l~i~ed~~-~~v~v~gl~~~~V~s~~e~l  262 (262)
                      |+|||..            .+.|+++.. ++++|.|++++.|.+.+|++
T Consensus       201 i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~  249 (403)
T 4etp_A          201 IVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVE  249 (403)
T ss_dssp             EEETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHH
T ss_pred             eeEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHH
Confidence            9999952            456777765 78999999999999999874

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*

Probab=100.00  E-value=1.3e-39  Score=298.16  Aligned_cols=160  Identities=21%  Similarity=0.273  Sum_probs=127.3

Q ss_pred             CCCCeEEEEEeCCCCccccCCCcceEEEcC--CceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCc
Q psy17370         96 ECSRMTVAVRIRPLLVKELHMDVSSIEISP--DRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYN  173 (262)
Q Consensus        96 ~~~~IkV~vRiRP~~~~E~~~~~~~i~~~~--~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n  173 (262)
                      ..++|+|+||+||++..|..++..++.+.+  +...+..    ..+.|+||+||+++++|++||+.+++|+|+.+|+|||
T Consensus        20 ~~~~VrV~vRvRP~~~~e~~~~~~~v~~~~~~~~~~~~~----~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~N   95 (344)
T 3dc4_A           20 KLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIV----DQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQ   95 (344)
T ss_dssp             CCSEEEEEEEECCCC-------CCSEECCSSSCSSEEEE----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHTCC
T ss_pred             CCCCeEEEEECCCCCcccccCCceEEEecCCCCCceEEe----cCcEEEcceEECCCCCHHHHHHhhccchhhHhhCCCc
Confidence            467999999999999877555666677654  3334443    4689999999999999999999999999999999999


Q ss_pred             eeEeeeeccCCCCceecCCCC------CCCchHhhhhhccccccCc------cceEEEEEEEEEE---EEecCCCCceee
Q psy17370        174 VCLFAYGQTGSGKSYRGDSTL------NSSVLRPRVLFYPGFSWSH------SGWTGWVSCVVVI---AVDFGCGSWRFE  238 (262)
Q Consensus       174 ~~ifaYG~tgSGKTyTm~G~~------~~~Giipr~~~~lf~~~~~------~~~~~~vS~~EIy---l~Dll~~~l~i~  238 (262)
                      +||||||||||||||||+|..      +++|||||++++||..++.      ..|.|+|||+|||   |+|||...-.. 
T Consensus        96 ~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~-  174 (344)
T 3dc4_A           96 CTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHM-  174 (344)
T ss_dssp             EEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTTS-
T ss_pred             eEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCCC-
Confidence            999999999999999999874      5789999999999987752      3589999999999   99999643211 


Q ss_pred             ecCCCcEEEcCceEEecCChhhhC
Q psy17370        239 SKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       239 ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                        +..+..+.|++++.|.+.+|++
T Consensus       175 --~~~~~~~~~~~~~~v~s~~e~~  196 (344)
T 3dc4_A          175 --PMVAARCQRCTCLPLHSQADLH  196 (344)
T ss_dssp             --BCCSSTTTCSCCEECSSHHHHH
T ss_pred             --ccccccccCceecccCCHHHHH
Confidence              1123335689999999999874

>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}

Probab=100.00  E-value=1.4e-35  Score=295.15  Aligned_cols=163  Identities=21%  Similarity=0.268  Sum_probs=124.5

Q ss_pred             CCCeEEEEEeC----CCCccccCCCcceEEEcC-------CceEE--EEcCC--CCceeeeeceeeCCCCCcchhhcccc
Q psy17370         97 CSRMTVAVRIR----PLLVKELHMDVSSIEISP-------DRREM--KVNDN--AKSYTFKLDHCLGQDTDQTSVFTIIA  161 (262)
Q Consensus        97 ~~~IkV~vRiR----P~~~~E~~~~~~~i~~~~-------~~~~i--~~~~~--~~~~~f~FD~vf~~~~~q~~vy~~~~  161 (262)
                      .++++||||+|    |....|..+....+.+..       ....+  ..+..  ...+.|+||+||+++++|++||+.+ 
T Consensus       373 l~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~-  451 (715)
T 4h1g_A          373 KGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEEL-  451 (715)
T ss_dssp             SCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCCHHHHGGGT-
T ss_pred             HhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHHHHHH-
Confidence            57899999999    555555442222223211       11222  22222  2789999999999999999999975 


Q ss_pred             hhhHhhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecCC-
Q psy17370        162 QPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFGC-  232 (262)
Q Consensus       162 ~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll~-  232 (262)
                      .|+|+.+|+|||+||||||||||||||||+|+  ++|||||++++||..+++     ..+.|+|||+|||   |+|||. 
T Consensus       452 ~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl~~  529 (715)
T 4h1g_A          452 SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNP  529 (715)
T ss_dssp             HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEESSSC
T ss_pred             HHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEECCCC
Confidence            59999999999999999999999999999996  689999999999988753     3788999999999   999995 


Q ss_pred             -----CCceeeecCC-CcEEEcCceEEecCChhhhC
Q psy17370        233 -----GSWRFESKPS-HEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       233 -----~~l~i~ed~~-~~v~v~gl~~~~V~s~~e~l  262 (262)
                           ..+.++++.. ++++|.|++++.|.+.+|++
T Consensus       530 ~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~  565 (715)
T 4h1g_A          530 KIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAI  565 (715)
T ss_dssp             CCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHH
T ss_pred             CCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHH
Confidence                 3467776654 66999999999999999874

>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.5e-27  Score=208.23  Aligned_cols=154  Identities=11%  Similarity=-0.015  Sum_probs=124.7

Q ss_pred             cccCCccccccCCCCCCeEEEEEeCCCC-ccccCCCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcc--hhhcc
Q psy17370         83 MRSSSENCVADNLECSRMTVAVRIRPLL-VKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQT--SVFTI  159 (262)
Q Consensus        83 ~~~~~~~~~~~~~~~~~IkV~vRiRP~~-~~E~~~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~--~vy~~  159 (262)
                      .|+.++|..++.  +|+||||||+||.. ..     .+.+......  +.. .. ..+.|.||+||++.+.|+  +||++
T Consensus        11 ~RRkL~NsI~EL--KGnIRVFcrvrp~~~p~-----~~~v~y~~~~--I~v-~~-~~k~f~FDRVf~p~s~Qe~~~vf~E   79 (298)
T 2o0a_A           11 RSRRLENSIIEQ--KGTMRCYAYVMEQNLPE-----NLLFDYENGV--ITQ-GL-SEHVYKFNRVIPHLKVSEDKFFTQE   79 (298)
T ss_dssp             HHHHHHHHHHHH--HTCCEEEEEECGGGSCT-----TEEEETTTTE--EEE-TT-TCCEEECSEEEETTTSCHHHHHHHT
T ss_pred             HHHHHHhHHHHh--hCceEEEEEeccccCCc-----cceeecCccc--eee-cC-CCceEEeeeEECccccccHHHHHHH
Confidence            345566766664  79999999999965 21     1223333322  333 11 348999999999999999  99999


Q ss_pred             cchhhHhhhhC-CCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc---cceEEEEEEEEEE----EEecC
Q psy17370        160 IAQPLLDAAFN-GYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH---SGWTGWVSCVVVI----AVDFG  231 (262)
Q Consensus       160 ~~~plv~~~l~-G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~---~~~~~~vS~~EIy----l~Dll  231 (262)
                       +.++|+.+|+ |||+|||||||||||||             ||++..+|...++   ..|.+.++|+|||    +.|||
T Consensus        80 -~~~~i~scLd~GyNvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~~~~~Y~~tlq~veLy~Ne~~~DLL  145 (298)
T 2o0a_A           80 -YSVYHDMCLNQKKNFNLISLSTTPHGSL-------------RESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDML  145 (298)
T ss_dssp             -THHHHHHHHHTTCCEEEEEECSSCCHHH-------------HHHHHHHHHSTTSHHHHHEEEEEEEEEEECC-CEEETT
T ss_pred             -HHHHHHHHHhCCCceEEEEECCCCCCcc-------------HHHHHHHHHHhhhhcccceEEEEEEEEEecCCchHHhc
Confidence             5699999999 99999999999999999             9999999999877   7999999999999    99998


Q ss_pred             C-----CCceeeecCCCcEEEcCceEEecCC-hhhh
Q psy17370        232 C-----GSWRFESKPSHEIYLSVSVLTDITK-FIEV  261 (262)
Q Consensus       232 ~-----~~l~i~ed~~~~v~v~gl~~~~V~s-~~e~  261 (262)
                      .     +.+.|+.+.++++++.|++.+.|.+ .+|+
T Consensus       146 ~~~~~~~k~eIk~~~~g~~iv~~s~~i~V~~~~edv  181 (298)
T 2o0a_A          146 LDYSHNDKDSIKLKFEKHSISLDSKLVIIENGLEDL  181 (298)
T ss_dssp             SCCC------CEEEECSSCEEEESCCEEESSGGGGS
T ss_pred             CCCCCCCcceEEecCCCCEEecccEEEEccccHHHH
Confidence            4     3457888889999999999999999 8876

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=93.88  E-value=0.0065  Score=48.88  Aligned_cols=50  Identities=18%  Similarity=0.159  Sum_probs=32.8

Q ss_pred             eeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370        140 TFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       140 ~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      .++||........|+++++.+ ..+++.+-......++-||++|+|||+.+
T Consensus         6 ~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~G~~G~GKTtL~   55 (180)
T 3ec2_A            6 NANLDTYHPKNVSQNRALLTI-RVFVHNFNPEEGKGLTFVGSPGVGKTHLA   55 (180)
T ss_dssp             TCCSSSCCCCSHHHHHHHHHH-HHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred             hCccccccCCCHHHHHHHHHH-HHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence            456777665555677777653 35555543222334667999999999987

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=92.67  E-value=0.018  Score=46.92  Aligned_cols=50  Identities=20%  Similarity=0.197  Sum_probs=31.4

Q ss_pred             eeeeceeeCCCCCcchhhcccchhhHhhhhCCC-ceeEeeeeccCCCCceec
Q psy17370        140 TFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGY-NVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       140 ~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~-n~~ifaYG~tgSGKTyTm  190 (262)
                      .++||........+..+++. +..++...-.+. +..++-||++|+|||+.+
T Consensus        21 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la   71 (202)
T 2w58_A           21 RASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLL   71 (202)
T ss_dssp             CCCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred             cCCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence            45677665444456666664 334444433332 256888999999999976

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=91.67  E-value=0.03  Score=49.55  Aligned_cols=49  Identities=20%  Similarity=0.304  Sum_probs=29.6

Q ss_pred             eeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370        141 FKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       141 f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      ++||........+..+++ .+...++..-.+....|+-||++|+||||.+
T Consensus       121 ~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La  169 (308)
T 2qgz_A          121 IHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLL  169 (308)
T ss_dssp             CCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHH
T ss_pred             CCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHH
Confidence            566654433334445555 2334555443333456778999999999987

>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=89.72  E-value=0.59  Score=41.54  Aligned_cols=126  Identities=11%  Similarity=0.086  Sum_probs=75.6

Q ss_pred             ccCCccccccCCCCCCeEEEEEeCCCCccccCCCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCC--Ccchhhcccc
Q psy17370         84 RSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDT--DQTSVFTIIA  161 (262)
Q Consensus        84 ~~~~~~~~~~~~~~~~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~--~q~~vy~~~~  161 (262)
                      |+.++|...+.  +|.||+|.-+-.-.-.      ..+.++-.+..|.  ....++.|.|++|++.+.  .+..+|++ +
T Consensus        47 RRkLENSIdEl--KG~IRcFAYi~~~~~p------~~~~idY~~~~It--~~~~~~~y~FnRiIp~~~~~e~~~l~qE-~  115 (333)
T 4etp_B           47 SRRLENSIIEQ--KGTMRVYAYVMEQNLP------ENLLFDYENGVIT--QGLSEHVYKFNRVIPHLKVSEDCFFTQE-Y  115 (333)
T ss_dssp             HHHHHHHHHHH--HTCCEEEEEECCSSCC------SSCEEETTTTEEE--C--CCCEEECSEEEETTTCCHHHHHHHT-T
T ss_pred             HHHHhhhHHHh--cCcEEEEEEECcccCC------ccEEEecccceEe--ecCCcceEEEeeeechhhcchHHHHHHH-H
Confidence            34444554443  7999999998653211      1345555554554  233788999999997666  55566666 5


Q ss_pred             hhhHhhhh-CCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccc--cCccceEEEEEEEEEE----EEecCC
Q psy17370        162 QPLLDAAF-NGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFS--WSHSGWTGWVSCVVVI----AVDFGC  232 (262)
Q Consensus       162 ~plv~~~l-~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~--~~~~~~~~~vS~~EIy----l~Dll~  232 (262)
                      +..++-+| .+.|+.|+.-|..-            ..-|---.+.+|...  +-...|.+.+-|+.+-    -.|+|.
T Consensus       116 q~y~DmcL~~~~NfslIsis~~~------------w~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~  181 (333)
T 4etp_B          116 SVYHDMALNQKKNFNLISLSTTP------------HGSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLL  181 (333)
T ss_dssp             HHHHHHHHHTTCCEEEEEEESSC------------CCHHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSC
T ss_pred             HHHHHHHHccCCCeeEEEecCCC------------cHHHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhc
Confidence            58888888 79999999988642            111222223332222  0124666777776655    577764

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=88.58  E-value=0.13  Score=44.97  Aligned_cols=48  Identities=19%  Similarity=0.236  Sum_probs=27.7

Q ss_pred             eceeeCCCCCcchhhcccchhhHhhhhC--CC--ceeEeeeeccCCCCceec
Q psy17370        143 LDHCLGQDTDQTSVFTIIAQPLLDAAFN--GY--NVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       143 FD~vf~~~~~q~~vy~~~~~plv~~~l~--G~--n~~ifaYG~tgSGKTyTm  190 (262)
                      ||..|+..---..+.+.++..++...+.  |.  ...|+-||+.|+|||+..
T Consensus         2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la   53 (293)
T 3t15_A            2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC   53 (293)
T ss_dssp             CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred             cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence            4444433323334445555566665553  22  235677999999999865

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=87.44  E-value=0.15  Score=39.94  Aligned_cols=29  Identities=14%  Similarity=0.081  Sum_probs=21.1

Q ss_pred             hhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370        162 QPLLDAAFNGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       162 ~plv~~~l~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      ..+++.+..+....++-||..|+|||+.+
T Consensus        32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~   60 (195)
T 1jbk_A           32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIV   60 (195)
T ss_dssp             HHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred             HHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence            34444444565667888999999999976

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=86.40  E-value=0.16  Score=39.72  Aligned_cols=28  Identities=14%  Similarity=0.063  Sum_probs=20.7

Q ss_pred             hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370        163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       163 plv~~~l~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      .+++.+..+....++-||..|+|||+.+
T Consensus        33 ~l~~~l~~~~~~~vll~G~~G~GKT~la   60 (187)
T 2p65_A           33 RAIQILSRRTKNNPILLGDPGVGKTAIV   60 (187)
T ss_dssp             HHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred             HHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence            4444444555667889999999999876

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=84.61  E-value=0.22  Score=44.02  Aligned_cols=45  Identities=20%  Similarity=0.223  Sum_probs=27.2

Q ss_pred             eeeCCCCCcchhhcccchhhHhhhh-CCCceeEeeeeccCCCCceec
Q psy17370        145 HCLGQDTDQTSVFTIIAQPLLDAAF-NGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       145 ~vf~~~~~q~~vy~~~~~plv~~~l-~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      +.++....+++..+... ..+..++ .+....++-||+.|+|||+.+
T Consensus        16 ~~p~~~~gr~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~l~   61 (387)
T 2v1u_A           16 YVPDVLPHREAELRRLA-EVLAPALRGEKPSNALLYGLTGTGKTAVA   61 (387)
T ss_dssp             CCCSCCTTCHHHHHHHH-HTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred             cCCCCCCCHHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence            33333444555554433 3333343 344567889999999999876

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=84.00  E-value=0.2  Score=42.56  Aligned_cols=45  Identities=18%  Similarity=0.244  Sum_probs=20.7

Q ss_pred             eeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370        140 TFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       140 ~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      .|+||.+.+.+    .....+. ..+..+.. .+..|+-||.+|+|||+..
T Consensus         2 ~~~f~~~ig~~----~~~~~~~-~~~~~~~~-~~~~vll~G~~GtGKt~la   46 (265)
T 2bjv_A            2 AEYKDNLLGEA----NSFLEVL-EQVSHLAP-LDKPVLIIGERGTGKELIA   46 (265)
T ss_dssp             --------CCC----HHHHHHH-HHHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred             CcccccceeCC----HHHHHHH-HHHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence            36788776533    3333322 22233332 2356778999999999865

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=83.93  E-value=0.19  Score=44.87  Aligned_cols=23  Identities=13%  Similarity=-0.003  Sum_probs=19.5

Q ss_pred             hhCCCceeEeeeeccCCCCceec
Q psy17370        168 AFNGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       168 ~l~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      +-.|...+++-||++|+|||.++
T Consensus        40 i~~~~~~~lli~GpPGTGKT~~v   62 (318)
T 3te6_A           40 LMSSQNKLFYITNADDSTKFQLV   62 (318)
T ss_dssp             HHTTCCCEEEEECCCSHHHHHHH
T ss_pred             hcCCCCCeEEEECCCCCCHHHHH
Confidence            33677788999999999999876

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=83.72  E-value=0.34  Score=39.71  Aligned_cols=24  Identities=25%  Similarity=0.432  Sum_probs=18.6

Q ss_pred             hHhhhhCCCceeEeeeeccCCCCcee
Q psy17370        164 LLDAAFNGYNVCLFAYGQTGSGKSYR  189 (262)
Q Consensus       164 lv~~~l~G~n~~ifaYG~tgSGKTyT  189 (262)
                      .+..+++|.|  ++..++||||||.+
T Consensus        44 ~i~~~~~~~~--~lv~~pTGsGKT~~   67 (224)
T 1qde_A           44 AIMPIIEGHD--VLAQAQSGTGKTGT   67 (224)
T ss_dssp             HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred             HHHHHhcCCC--EEEECCCCCcHHHH
Confidence            4556678877  56678999999987

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=83.69  E-value=0.29  Score=42.89  Aligned_cols=49  Identities=16%  Similarity=0.296  Sum_probs=28.5

Q ss_pred             eeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370        139 YTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       139 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      ..|+||.... ...+...+.. +..+++.-- +....++-||++|+|||+.+
T Consensus         6 ~~~~f~~fv~-g~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la   54 (324)
T 1l8q_A            6 PKYTLENFIV-GEGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLL   54 (324)
T ss_dssp             TTCCSSSCCC-CTTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHH
T ss_pred             CCCCcccCCC-CCcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHH
Confidence            3577887652 2334444433 333333211 12346788999999999977

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=83.40  E-value=0.34  Score=37.93  Aligned_cols=16  Identities=31%  Similarity=0.634  Sum_probs=13.6

Q ss_pred             eEeeeeccCCCCceec
Q psy17370        175 CLFAYGQTGSGKSYRG  190 (262)
Q Consensus       175 ~ifaYG~tgSGKTyTm  190 (262)
                      .++-||++|+|||+.+
T Consensus        38 ~~~l~G~~G~GKTtL~   53 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLL   53 (149)
T ss_dssp             EEEEESSSTTTTCHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4556999999999977

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19

Probab=83.00  E-value=0.45  Score=38.32  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=18.5

Q ss_pred             hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370        163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       163 plv~~~l~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      ..+..+++|.+  ++..++||||||.+.
T Consensus        32 ~~i~~~~~~~~--~lv~apTGsGKT~~~   57 (206)
T 1vec_A           32 ESIPIALSGRD--ILARAKNGTGKSGAY   57 (206)
T ss_dssp             HHHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred             HHHHHHccCCC--EEEECCCCCchHHHH
Confidence            34556677876  456779999999643

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=82.82  E-value=0.38  Score=38.71  Aligned_cols=24  Identities=33%  Similarity=0.556  Sum_probs=18.0

Q ss_pred             hHhhhhCCCceeEeeeeccCCCCcee
Q psy17370        164 LLDAAFNGYNVCLFAYGQTGSGKSYR  189 (262)
Q Consensus       164 lv~~~l~G~n~~ifaYG~tgSGKTyT  189 (262)
                      .+..+++|.+  ++..++||||||.+
T Consensus        31 ~i~~~~~~~~--~li~~~TGsGKT~~   54 (207)
T 2gxq_A           31 ALPLALEGKD--LIGQARTGTGKTLA   54 (207)
T ss_dssp             HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred             HHHHHcCCCC--EEEECCCCChHHHH
Confidence            3456677877  45567999999986

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=81.70  E-value=0.26  Score=41.74  Aligned_cols=51  Identities=16%  Similarity=0.259  Sum_probs=29.3

Q ss_pred             eeeeeceeeCCCCCcchhhcccchhhHh-hhh----CCCceeEeeeeccCCCCceec
Q psy17370        139 YTFKLDHCLGQDTDQTSVFTIIAQPLLD-AAF----NGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       139 ~~f~FD~vf~~~~~q~~vy~~~~~plv~-~~l----~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      ..+.|+.+.+.+...+.+.+. +..+-. ..+    ......++-||++|+|||+.+
T Consensus         6 ~~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la   61 (268)
T 2r62_A            6 PNVRFKDMAGNEEAKEEVVEI-VDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA   61 (268)
T ss_dssp             CCCCSTTSSSCTTTHHHHHHH-HHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred             CCCCHHHhCCcHHHHHHHHHH-HHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence            346778777766665555442 211110 011    112334788999999999876

>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}

Probab=81.37  E-value=0.46  Score=39.57  Aligned_cols=25  Identities=32%  Similarity=0.505  Sum_probs=19.0

Q ss_pred             hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370        163 PLLDAAFNGYNVCLFAYGQTGSGKSYR  189 (262)
Q Consensus       163 plv~~~l~G~n~~ifaYG~tgSGKTyT  189 (262)
                      ..+..+++|.+  ++..++||||||.+
T Consensus        58 ~~i~~~~~~~~--~l~~a~TGsGKT~~   82 (245)
T 3dkp_A           58 QAIPVMLHGRE--LLASAPTGSGKTLA   82 (245)
T ss_dssp             HHHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred             HHHHHHhCCCC--EEEECCCCCcHHHH
Confidence            34556778877  56678999999986

>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*

Probab=81.06  E-value=0.31  Score=40.64  Aligned_cols=25  Identities=28%  Similarity=0.551  Sum_probs=19.0

Q ss_pred             hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370        163 PLLDAAFNGYNVCLFAYGQTGSGKSYR  189 (262)
Q Consensus       163 plv~~~l~G~n~~ifaYG~tgSGKTyT  189 (262)
                      ..+..+++|.|  ++..++||||||.+
T Consensus        59 ~ai~~i~~~~~--~li~apTGsGKT~~   83 (237)
T 3bor_A           59 RAIIPCIKGYD--VIAQAQSGTGKTAT   83 (237)
T ss_dssp             HHHHHHHTTCC--EEECCCSSHHHHHH
T ss_pred             HHHHHHhCCCC--EEEECCCCCcHHHH
Confidence            34556778877  56688999999976

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=80.23  E-value=0.24  Score=42.32  Aligned_cols=52  Identities=17%  Similarity=0.324  Sum_probs=29.5

Q ss_pred             eeeeeceeeCCCCCcchhhcccchhhHhh-hh----CCCceeEeeeeccCCCCceec
Q psy17370        139 YTFKLDHCLGQDTDQTSVFTIIAQPLLDA-AF----NGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       139 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~-~l----~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      ..+.|+.+.+.+..-+.+.+.+..++... .+    -.....++-||+.|+|||+.+
T Consensus        12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la   68 (285)
T 3h4m_A           12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA   68 (285)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence            35677777765544444444333222111 11    123345788999999999866

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	262
d1v8ka_	362	c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c	5e-19
d1goja_	354	c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5	2e-17
d1sdma_	364	c.37.1.9 (A:) Kinesin heavy chain-like protein {Po	1e-16
d1ry6a_	330	c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu	2e-15
d2ncda_	368	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	2e-15
d1bg2a_	323	c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId	3e-15
d1x88a1	345	c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens),	7e-14
d2zfia1	349	c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus),	9e-13
d1f9va_	342	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	1e-10

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

 Score = 83.0 bits (204), Expect = 5e-19
 Identities = 38/188 (20%), Positives = 63/188 (33%), Gaps = 18/188 (9%)

Query: 74  IKLPRANLIMRSSSENCVADNLECSRMTVAVRIRPLLVKELHM---------DVSSIEIS 124
           IK  R  +     +     D +E  R+ V VR RPL  +EL               + + 
Sbjct: 9   IKEFRVTMECSPLTVT---DPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVH 65

Query: 125 PDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGS 184
             + ++ +    ++  F  D    +      V+   A+PL+   F G     FAYGQTGS
Sbjct: 66  EPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGS 125

Query: 185 GKSY------RGDSTLNSSVLRPRVLFYPGFSWSHSGWTGWVSCVVVIAVDFGCGSWRFE 238
           GK++       G S   S  +            +   +      V V   +   G     
Sbjct: 126 GKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDL 185

Query: 239 SKPSHEIY 246
                ++ 
Sbjct: 186 LNKKAKLR 193

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

 Score = 78.4 bits (192), Expect = 2e-17
 Identities = 32/105 (30%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 85  SSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLD 144
           SSS N +          V  R RP    E+      I          V+      +F  D
Sbjct: 1   SSSANSI---------KVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFD 51

Query: 145 HCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYR 189
                   Q+ +F    +P +D   NGYN  +FAYGQTG+GKSY 
Sbjct: 52  RVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYT 96

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 76.2 bits (186), Expect = 1e-16
 Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 3/157 (1%)

Query: 99  RMTVAVRIRPLLVKEL-HMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVF 157
           ++ V  R+RPL  KE+   + ++I    +     +  + K+     D     +  Q  VF
Sbjct: 1   KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVF 60

Query: 158 TIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSHSGWT 217
                 L+ +A +GYNVC+FAYGQTGSGK++      ++  L PR +    F        
Sbjct: 61  EDTK-YLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSEL-FRIMKKDSN 118

Query: 218 GWVSCVVVIAVDFGCGSWRFESKPSHEIYLSVSVLTD 254
            +   +    V+    +      P     L + +  D
Sbjct: 119 KFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKD 155

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 72.3 bits (176), Expect = 2e-15
 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 14/156 (8%)

Query: 102 VAVRIRPLLVKELHM---------DVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTD 152
           V VR RPL   E            +  ++ I   R ++ +    + + F +D       D
Sbjct: 4   VVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVD 63

Query: 153 QTSVF-TIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYP---- 207
             +V+   I   ++D   NG     FAYGQTGSGK+Y    +          +F      
Sbjct: 64  NFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGD 123

Query: 208 GFSWSHSGWTGWVSCVVVIAVDFGCGSWRFESKPSH 243
            F++ +         + +   +  CG      +   
Sbjct: 124 IFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK 159

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 72.6 bits (177), Expect = 2e-15
 Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 11/150 (7%)

Query: 102 VAVRIRPLLVKEL--------HMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
           V  RIRP L  E         + D S++E+     + K     + ++F  D      + Q
Sbjct: 49  VFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSF--DQVFHPLSSQ 106

Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH 213
           + +F +++ PL+ +A +GYN+C+FAYGQTGSGK+Y  D    S  + PR +     S   
Sbjct: 107 SDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRG 165

Query: 214 SGWTGWVSCVVVIAVDFGCGSWRFESKPSH 243
               GW   +    ++              
Sbjct: 166 YRNLGWEYEIKATFLEIYNEVLYDLLSNEQ 195

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (175), Expect = 3e-15
 Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 9/154 (5%)

Query: 93  DNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTD 152
           D  EC+ + V  R RPL   E++     I        + +   +K Y F  D      T 
Sbjct: 1   DLAECN-IKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA--SKPYAF--DRVFQSSTS 55

Query: 153 QTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLR---PRVLFYPGF 209
           Q  V+   A+ ++     GYN  +FAYGQT SGK++  +  L+        PR++    F
Sbjct: 56  QEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDI-F 114

Query: 210 SWSHSGWTGWVSCVVVIAVDFGCGSWRFESKPSH 243
           ++ +S        + V   +      R     S 
Sbjct: 115 NYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSK 148

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

 Score = 68.1 bits (165), Expect = 7e-14
 Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 102 VAVRIRPLLVKELHMDVSSI-EISPDRREMKV-----NDNAKSYTFKLDHCLGQDTDQTS 155
           V VR RP  + E      SI E  P R+E+ V      D +   T+  D   G  T Q  
Sbjct: 4   VVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQID 63

Query: 156 VFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
           V+  +  P+LD    GYN  +FAYGQTG+GK++
Sbjct: 64  VYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTF 96

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

 Score = 65.0 bits (157), Expect = 9e-13
 Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 17/161 (10%)

Query: 98  SRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVN-----DNAKSYTFKLDHCLGQDTD 152
           + + VAVR+RP   +E+  D   I          VN     +  KS++F  D+     T 
Sbjct: 1   ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSF--DYSYWSHTS 58

Query: 153 --------QTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYR--GDSTLNSSVLRPR 202
                   Q  V+  I + +L  AF GYNVC+FAYGQTG+GKSY   G    +   + P+
Sbjct: 59  PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQ 118

Query: 203 VLFYPGFSWSHSGWTGWVSCVVVIAVDFGCGSWRFESKPSH 243
           +        + +        V V  ++  C   R    P +
Sbjct: 119 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKN 159

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

 Score = 58.9 bits (141), Expect = 1e-10
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 102 VAVRIRPLLVKELHMDVSSIEISPDRREM--------KVNDNAKSYTFKLDHCLGQDTDQ 153
           V  RIRP L    + D S I ++              K+ + A+ + FK D    Q    
Sbjct: 5   VYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTN 64

Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYR 189
             VF  +   L+ ++ +GYNVC+FAYGQTGSGK++ 
Sbjct: 65  VDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFT 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	262
d1v8ka_	362	Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090	100.0
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	100.0
d2zfia1	349	Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090	100.0
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x88a1	345	Kinesin {Human (Homo sapiens), mitotic kinesin eg5	100.0
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	100.0
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	100.0
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	100.0
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	100.0
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.04
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	92.6
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	90.32
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	88.97
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	87.03
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	86.46
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	85.36
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	84.69
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	84.57
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	84.09
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	84.01
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	83.31
d1okkd2	207	GTPase domain of the signal recognition particle r	82.77
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	82.45
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	82.45
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	81.24
d1wrba1	238	putative ATP-dependent RNA helicase VlgB {Flatworm	81.1
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	80.99
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	80.99
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	80.01

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

Probab=100.00  E-value=1.4e-41  Score=311.72  Aligned_cols=167  Identities=22%  Similarity=0.246  Sum_probs=145.0

Q ss_pred             CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCC-C-------CceeeeeceeeCCCCCcchhhcccchhhHh
Q psy17370         96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDN-A-------KSYTFKLDHCLGQDTDQTSVFTIIAQPLLD  166 (262)
Q Consensus        96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~-~-------~~~~f~FD~vf~~~~~q~~vy~~~~~plv~  166 (262)
                      ++++|+|+||+||++..|.. ++..+|.+.++...+...+. .       ..+.|+||+||+++++|++||+.++.|+|+
T Consensus        28 ~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~Q~~Vy~~~~~plv~  107 (362)
T d1v8ka_          28 EEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQ  107 (362)
T ss_dssp             SCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHH
T ss_pred             CCCCEEEEEEeCCCChHHhhCCCceEEEECCCcEEEEeCCccccccccCcCceeEeCCeecCCCCCHHHHHHHHHHHHHH
Confidence            46789999999999999876 66677777665544433211 1       457899999999999999999999999999


Q ss_pred             hhhCCCceeEeeeeccCCCCceecCCCC------CCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecCC
Q psy17370        167 AAFNGYNVCLFAYGQTGSGKSYRGDSTL------NSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFGC  232 (262)
Q Consensus       167 ~~l~G~n~~ifaYG~tgSGKTyTm~G~~------~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll~  232 (262)
                      .+|+|+|+||||||||||||||||+|+.      .++||+||++++||..+++     ..|.|++||+|||   ++|||.
T Consensus       108 ~~l~G~n~tifaYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~~~v~vS~~EIyne~i~DLL~  187 (362)
T d1v8ka_         108 TIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN  187 (362)
T ss_dssp             HHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTT
T ss_pred             HHHhccCceEEeeccCCCCCceeeeecCCCCcccccCCeeeehhhhHHHHhhcccccccchhheeeeeeecCCeEEeccc
Confidence            9999999999999999999999999975      3689999999999987764     3799999999999   999995


Q ss_pred             --CCceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370        233 --GSWRFESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       233 --~~l~i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                        ..+.++++..+++++.|++++.|.+.+|++
T Consensus       188 ~~~~~~~~~~~~~~~~v~gl~e~~v~s~~e~~  219 (362)
T d1v8ka_         188 KKAKLRVLEDSRQQVQVVGLQEYLVTCADDVI  219 (362)
T ss_dssp             TTEEEEEEECSSCCEEEETCCCEEESSHHHHH
T ss_pred             CCccccccccccCCcccCCCEEEEecCHHHHH
Confidence              556888999999999999999999999974

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=8.7e-41  Score=306.68  Aligned_cols=163  Identities=23%  Similarity=0.304  Sum_probs=147.1

Q ss_pred             CeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEe
Q psy17370         99 RMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLF  177 (262)
Q Consensus        99 ~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~if  177 (262)
                      +|+|+|||||+...|.. +...++.+.++............+.|+||+||+++++|++||+.+ .|+|+.+|+|+|+|||
T Consensus         1 rIkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~v-~~lv~~~l~G~n~~i~   79 (364)
T d1sdma_           1 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDT-KYLVQSAVDGYNVCIF   79 (364)
T ss_dssp             CCEEEEEECCCCHHHHHTTCCBCEEECSTTEEEEECSSSSEEEEECSEEECTTCCHHHHHHTT-THHHHHHHTTCEEEEE
T ss_pred             CeEEEEEcCCCChhhcccCCCCeEEeCCCCeEEecCCCCCceEEECCeecCCCCCHHHHHHHH-HHHHHHHhcCCceeee
Confidence            58999999999998866 566778887777766666666889999999999999999999985 7999999999999999


Q ss_pred             eeeccCCCCceecCCCCCCCchHhhhhhccccccCc----cceEEEEEEEEEE---EEecCC------CCceeeecCCCc
Q psy17370        178 AYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---AVDFGC------GSWRFESKPSHE  244 (262)
Q Consensus       178 aYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l~Dll~------~~l~i~ed~~~~  244 (262)
                      |||||||||||||+|+..++|||||++++||..+.+    ..|.+++||+|||   ++|||.      ..+.+++|..++
T Consensus        80 aYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~l~~~~~~~~~  159 (364)
T d1sdma_          80 AYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGM  159 (364)
T ss_dssp             EECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEESSSCEEETTSCTTSCCCCCEEEECTTSC
T ss_pred             ccccCCCCcccccccCccccchhHHHHHHHHhhhhhccccccceEEEEEEEEeccccccccCcccccccccceeecccCc
Confidence            999999999999999999999999999999987753    4789999999999   999994      356889999999


Q ss_pred             EEEcCceEEecCChhhhC
Q psy17370        245 IYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       245 v~v~gl~~~~V~s~~e~l  262 (262)
                      ++|.|++++.|.+.+|++
T Consensus       160 ~~v~~l~~~~v~s~~~~~  177 (364)
T d1sdma_         160 VSVENVTVVSISTYEELK  177 (364)
T ss_dssp             EEEETCCCEEECSHHHHH
T ss_pred             cccccceeeeeCCHHHHH
Confidence            999999999999999874

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

Probab=100.00  E-value=8.3e-41  Score=305.12  Aligned_cols=164  Identities=26%  Similarity=0.374  Sum_probs=145.6

Q ss_pred             CeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCC--CceeeeeceeeCCC--------CCcchhhcccchhhHhh
Q psy17370         99 RMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNA--KSYTFKLDHCLGQD--------TDQTSVFTIIAQPLLDA  167 (262)
Q Consensus        99 ~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~--~~~~f~FD~vf~~~--------~~q~~vy~~~~~plv~~  167 (262)
                      +|||+|||||+...|.. ++.+++.+.++...+..+...  ..+.|.||+||+++        ++|++||+.++.|+|+.
T Consensus         2 sIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~f~FD~vf~~~~~~~~~~~~sQ~~vy~~~~~plv~~   81 (349)
T d2zfia1           2 SVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQH   81 (349)
T ss_dssp             CEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHH
T ss_pred             cEEEEEEeCCCChhHhcCCCcEEEEECCCcEEEECCCCCCcCCeeEEeceEeCCCCCccccccccHHHHHHHhhHHHHHH
Confidence            69999999999998876 677788888777666554332  56899999999876        57999999999999999


Q ss_pred             hhCCCceeEeeeeccCCCCceecCCCC--CCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecCC----C
Q psy17370        168 AFNGYNVCLFAYGQTGSGKSYRGDSTL--NSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFGC----G  233 (262)
Q Consensus       168 ~l~G~n~~ifaYG~tgSGKTyTm~G~~--~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll~----~  233 (262)
                      +++|+|+||||||||||||||||+|+.  .++|||||++++||..++.     ..+.+++||+|||   ++|||.    .
T Consensus        82 ~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~Glipr~l~~lf~~~~~~~~~~~~~~v~~S~~Eiyne~i~DLL~~~~~~  161 (349)
T d2zfia1          82 AFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKG  161 (349)
T ss_dssp             HHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTTCS
T ss_pred             HHhccCceeeeeccCCCCCceeeccCccccccCchHHHHhhhhhhccccccCCcceEEEEEeeeeeCCEEEecccccccC
Confidence            999999999999999999999999986  4899999999999987752     4788999999999   999995    6


Q ss_pred             CceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370        234 SWRFESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       234 ~l~i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      ++.+++|..++++|.|++++.|.+.+|++
T Consensus       162 ~~~i~~~~~~~~~v~~l~~~~v~s~~e~~  190 (349)
T d2zfia1         162 NLRVREHPLLGPYVEDLSKLAVTSYNDIQ  190 (349)
T ss_dssp             CBCEEEETTTEEEETTCCCEECCSHHHHH
T ss_pred             CceEEecCCCCcEEEEeEEEeccCHHHHH
Confidence            78999999999999999999999999874

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-40  Score=298.74  Aligned_cols=162  Identities=21%  Similarity=0.215  Sum_probs=144.9

Q ss_pred             CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCce
Q psy17370         96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNV  174 (262)
Q Consensus        96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~  174 (262)
                      .+.||+|+||+||++..|.. ++..++.+.++...+.     ..+.|+||+||+++++|++||+.+++|+|+.+|+|+|+
T Consensus         3 ~~~NI~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~-----~~~~f~FD~vf~~~~~q~~vf~~~~~~lv~~~l~G~n~   77 (323)
T d1bg2a_           3 AECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI-----ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNG   77 (323)
T ss_dssp             SSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEE-----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCE
T ss_pred             CCCCEEEEEEeCCCChHHhccCCceEEEECCCCeEEE-----CCceeECCEEECCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence            46789999999999998876 6677777777666543     56899999999999999999999999999999999999


Q ss_pred             eEeeeeccCCCCceecCCCCC---CCchHhhhhhccccccC----ccceEEEEEEEEEE---EEecCC---CCceeeecC
Q psy17370        175 CLFAYGQTGSGKSYRGDSTLN---SSVLRPRVLFYPGFSWS----HSGWTGWVSCVVVI---AVDFGC---GSWRFESKP  241 (262)
Q Consensus       175 ~ifaYG~tgSGKTyTm~G~~~---~~Giipr~~~~lf~~~~----~~~~~~~vS~~EIy---l~Dll~---~~l~i~ed~  241 (262)
                      ||||||||||||||||+|+..   ..|||||++++||..+.    ..++.|+|||+|||   ++|||.   .++.+++|.
T Consensus        78 ~i~aYGqtgSGKTyT~~G~~~~~~~~gii~r~l~~l~~~~~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~~~~~  157 (323)
T d1bg2a_          78 TIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDK  157 (323)
T ss_dssp             EEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCSBCEEECT
T ss_pred             ceeeecccCCCCceeccCCcccccccchhhhHHHHHHhhhhccccccceEEEEEEEEEEcCcccccccccccceeEeecc
Confidence            999999999999999999764   45999999999998765    34789999999999   999984   678999999


Q ss_pred             CCcEEEcCceEEecCChhhhC
Q psy17370        242 SHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       242 ~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      .+++++.|++++.|.+.+|++
T Consensus       158 ~~~~~v~~l~~~~v~s~~~~~  178 (323)
T d1bg2a_         158 NRVPYVKGCTERFVCSPDEVM  178 (323)
T ss_dssp             TSCEEETTCCCEEECSHHHHH
T ss_pred             ccceeecCCEEEEEeccHhHh
Confidence            999999999999999999874

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

Probab=100.00  E-value=1.4e-40  Score=303.13  Aligned_cols=164  Identities=26%  Similarity=0.375  Sum_probs=141.2

Q ss_pred             CeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCC-----CCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCC
Q psy17370         99 RMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDN-----AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGY  172 (262)
Q Consensus        99 ~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~-----~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~  172 (262)
                      ||||+||+||++..|.. +...++.+++....+.+...     ...+.|+||+||+++++|++||+.++.|+|+.+++|+
T Consensus         1 NI~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~lv~~~l~G~   80 (345)
T d1x88a1           1 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGY   80 (345)
T ss_dssp             CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CeEEEEEECCCChhhhccCCCeEEEEcCCCceEEEecCCCCCCCCcceEecCEEeCCCCCHHHHHHHHHHHhHHHHhccC
Confidence            79999999999998876 67778888877665544321     2567899999999999999999999999999999999


Q ss_pred             ceeEeeeeccCCCCceecCCCCCC-----------CchHhhhhhccccccCc--cceEEEEEEEEEE---EEecCCC---
Q psy17370        173 NVCLFAYGQTGSGKSYRGDSTLNS-----------SVLRPRVLFYPGFSWSH--SGWTGWVSCVVVI---AVDFGCG---  233 (262)
Q Consensus       173 n~~ifaYG~tgSGKTyTm~G~~~~-----------~Giipr~~~~lf~~~~~--~~~~~~vS~~EIy---l~Dll~~---  233 (262)
                      |+||||||||||||||||+|+...           +|||||++++||..+..  .+|.++|||+|||   ++|||..   
T Consensus        81 n~~i~aYGqtgSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~  160 (345)
T d1x88a1          81 NCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSD  160 (345)
T ss_dssp             EEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSSSEEEEEEEEEEEEETTEEEETTCTTSC
T ss_pred             CceEEeeeeccccceEEeeecCCcccccccccCccCCcHHHHHHHHHHhhhccCceEEEEEEEEEEECCeeEECCCCCCc
Confidence            999999999999999999998733           69999999999998875  4789999999999   9999952   


Q ss_pred             ---C--ceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370        234 ---S--WRFESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       234 ---~--l~i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                         .  +.++++..++++|.|++++.|.+.+|++
T Consensus       161 ~~~~~~~~~~~~~~~~~~v~gl~~~~v~s~~e~~  194 (345)
T d1x88a1         161 VSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVY  194 (345)
T ss_dssp             TTCCBEEEEETTEEEEEEEETCCCEEECSGGGHH
T ss_pred             ccccceeeecccCCCCEEEcCCEEEEeCCHHHHH
Confidence               2  2344555679999999999999999974

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=100.00  E-value=6.5e-40  Score=299.72  Aligned_cols=165  Identities=24%  Similarity=0.328  Sum_probs=146.0

Q ss_pred             CCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCcee
Q psy17370         97 CSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVC  175 (262)
Q Consensus        97 ~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~  175 (262)
                      ..+|+|+|||||++..|.. +...++.+.+.+.. .+......+.|+||+||+++++|++||+.+++|+|+.+++|+|+|
T Consensus         4 ~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~-~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~t   82 (354)
T d1goja_           4 ANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTC-TVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGT   82 (354)
T ss_dssp             SCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEE-EECSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEE
T ss_pred             CCCEEEEEEcCCCChHHHhcCCceEEEEECCCeE-EEcCCCCcceEECCeEcCCCCCHHHHHHHHHHHHHHHhhccCcee
Confidence            5689999999999999987 66677777665554 444445678999999999999999999999999999999999999


Q ss_pred             EeeeeccCCCCceecCCCC----CCCchHhhhhhccccccCc----cceEEEEEEEEEE---EEecCC---CCceeeecC
Q psy17370        176 LFAYGQTGSGKSYRGDSTL----NSSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---AVDFGC---GSWRFESKP  241 (262)
Q Consensus       176 ifaYG~tgSGKTyTm~G~~----~~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l~Dll~---~~l~i~ed~  241 (262)
                      |||||||||||||||+|..    ...|||||++++||..+..    .+|.|+|||+|||   ++|||.   ..+.++++.
T Consensus        83 i~aYG~tgSGKT~Tm~G~~~~~~~~~Giipr~l~~l~~~~~~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~l~~~e~~  162 (354)
T d1goja_          83 VFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEK  162 (354)
T ss_dssp             EEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSCCEEEET
T ss_pred             EEecccCCCCcceeeecccccCcccceecchhHHHHhhhhcccccCceEEEEeehhheecceEeecccccccceeeeeec
Confidence            9999999999999999954    5679999999999987653    4789999999999   999984   578999999


Q ss_pred             CCcEEEcCceEEecCChhhhC
Q psy17370        242 SHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       242 ~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      .+++++.|++++.|.+.+|++
T Consensus       163 ~~~~~v~~l~~~~v~s~~~~~  183 (354)
T d1goja_         163 NRGVYVKGLLEIYVSSVQEVY  183 (354)
T ss_dssp             TTEEEETTCCCEECCSHHHHH
T ss_pred             CCCEeecCceeecchhHHHHH
Confidence            999999999999999999874

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=4e-40  Score=298.47  Aligned_cols=163  Identities=20%  Similarity=0.170  Sum_probs=132.3

Q ss_pred             eEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCC--------CCceeeeeceeeCCCCCcchhhcccchhhHhhhh-
Q psy17370        100 MTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDN--------AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAF-  169 (262)
Q Consensus       100 IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~--------~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l-  169 (262)
                      |||+|||||+...|.. ++..++.+.++...+...+.        ...+.|+||+||+++++|++||+.+++|+|.+++ 
T Consensus         2 IkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~fD~Vf~~~~~q~~vy~~~~~plv~~~~~   81 (330)
T d1ry6a_           2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYE   81 (330)
T ss_dssp             EEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHHH
T ss_pred             EEEEEEeCCCChHHHhcCCceEEEECCCcEEEEcCCccccccccCcCcceEeCCeecCCCCCHHHHHHHHHHHHHHHHHh
Confidence            8999999999988876 66677777665543322111        1457899999999999999999999999999988 


Q ss_pred             CCCceeEeeeeccCCCCceecCCCC-----CCCchHhhhhhccccccC----ccceEEEEEEEEEE---EEecCC--CCc
Q psy17370        170 NGYNVCLFAYGQTGSGKSYRGDSTL-----NSSVLRPRVLFYPGFSWS----HSGWTGWVSCVVVI---AVDFGC--GSW  235 (262)
Q Consensus       170 ~G~n~~ifaYG~tgSGKTyTm~G~~-----~~~Giipr~~~~lf~~~~----~~~~~~~vS~~EIy---l~Dll~--~~l  235 (262)
                      +|+|+||||||||||||||||+|+.     +++|||||++++||..++    ...+.|.+||+|||   ++|||.  ..+
T Consensus        82 ~G~n~~i~aYGqTGSGKTyTm~G~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~  161 (330)
T d1ry6a_          82 NGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMV  161 (330)
T ss_dssp             HCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC----
T ss_pred             cCCCeEEEeeeccccccceeeecccccccccCCCchhHHHhhhhhhhhhhcccceEEEEEEEEeeecccccccccccccc
Confidence            5999999999999999999999975     578999999999998764    35889999999999   999994  678


Q ss_pred             eeeecCCCcEEEcCceEEecCChhhhC
Q psy17370        236 RFESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       236 ~i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      .++++.++++++.|++++.|.+.+|++
T Consensus       162 ~~~~~~~~~~~v~~l~~~~v~s~~e~~  188 (330)
T d1ry6a_         162 AALENGKKEVVVKDLKILRVLTKEELI  188 (330)
T ss_dssp             -------CCBCGGGSCCEEECSHHHHH
T ss_pred             eeeecCCCCccccCceEEEEeeccchh
Confidence            899999999999999999999999874

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=3.9e-39  Score=296.03  Aligned_cols=175  Identities=25%  Similarity=0.351  Sum_probs=144.2

Q ss_pred             ccCCccccccCCCCCCeEEEEEeCCCCccccCCCcceEEEcCCceEEEEcC-------CCCceeeeeceeeCCCCCcchh
Q psy17370         84 RSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVND-------NAKSYTFKLDHCLGQDTDQTSV  156 (262)
Q Consensus        84 ~~~~~~~~~~~~~~~~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i~~~~-------~~~~~~f~FD~vf~~~~~q~~v  156 (262)
                      |..++|...|.  +|+|+|+||+||++..|......++...++.. +.+..       ....+.|.||+||+++++|++|
T Consensus        33 ~~~l~~~~~~~--~gnIkV~vRvRP~~~~E~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~V  109 (368)
T d2ncda_          33 RKELHNTVMDL--RGNIRVFCRIRPPLESEENRMCCTWTYHDEST-VELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDI  109 (368)
T ss_dssp             HHHHHHHHHHH--HCSEEEEEEECCCCGGGTTSCBCEEEEETTTE-EEEECSCHHHHTTTCCCEEECSEEECTTCCHHHH
T ss_pred             HHHHHhHHHHh--cCCEEEEEEeCCCCchhcCCCCcEEEeCCCCe-EEEccCCccccCCcCceeeECCeEECCCCCccch
Confidence            44456666664  78999999999999998764444444433333 32222       1256889999999999999999


Q ss_pred             hcccchhhHhhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EE
Q psy17370        157 FTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AV  228 (262)
Q Consensus       157 y~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~  228 (262)
                      |+. +.|+|+.+++|+|+||||||||||||||||+|+..++|||||++++||..+..     ..|.|+|||+|||   ++
T Consensus       110 y~~-v~plv~~vl~G~n~ti~aYGqtGSGKT~Tm~G~~~~~Giipr~~~~Lf~~~~~~~~~~~~~~v~vS~~EIyne~i~  188 (368)
T d2ncda_         110 FEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLY  188 (368)
T ss_dssp             HTT-THHHHHHHHTTCEEEEEEECSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEESSSCEE
T ss_pred             HHH-HHHHHHHHhcccceeEEeeccCCCccceEecccccccchhhHHHHHHhhhhhhhccccccceEEEEEEEEecceee
Confidence            975 56999999999999999999999999999999999999999999999987753     4788999999999   99


Q ss_pred             ecCCC-----CceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370        229 DFGCG-----SWRFESKPSHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       229 Dll~~-----~l~i~ed~~~~v~v~gl~~~~V~s~~e~l  262 (262)
                      |||..     ...+++|..+++++.|++++.|.+.+|++
T Consensus       189 DLL~~~~~~~~~~~~~d~~~~~~v~g~~~~~v~~~~~~~  227 (368)
T d2ncda_         189 DLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLR  227 (368)
T ss_dssp             ETTCSSCCCCCEEECTTCTTCEEETTCCCEEECSHHHHH
T ss_pred             cccccccccccceeeccccccccccccceeccCCHHHHH
Confidence            99852     34566888899999999999999998863

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=100.00  E-value=5e-38  Score=285.89  Aligned_cols=162  Identities=23%  Similarity=0.327  Sum_probs=133.0

Q ss_pred             CCeEEEEEeCCCCccccCCCcceEEEcCCce-------EE-EEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhh
Q psy17370         98 SRMTVAVRIRPLLVKELHMDVSSIEISPDRR-------EM-KVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAF  169 (262)
Q Consensus        98 ~~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~-------~i-~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l  169 (262)
                      |+|||+||+||+...|...+..++.+.....       .. ........+.|.||+||+++++|++||+.+ .|+|+.++
T Consensus         1 G~IrV~vRvRP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~v-~~~v~~~l   79 (342)
T d1f9va_           1 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQSSL   79 (342)
T ss_dssp             CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHH-HHHHGGGG
T ss_pred             CcEEEEEEeCcCCcccccCCCceEEeeccCCcceeeeccccccCCCCCceEeecCeEeCCCCCHHHHHHHh-hhhhcchh
Confidence            6899999999998877665666666643221       11 112233678999999999999999999974 59999999


Q ss_pred             CCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecCCCC-------
Q psy17370        170 NGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFGCGS-------  234 (262)
Q Consensus       170 ~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll~~~-------  234 (262)
                      +|+|+||||||||||||||||+|+  ++|||||++++||..++.     ..+.++|||+|||   ++|||..+       
T Consensus        80 ~G~n~~i~aYGqtgSGKT~T~~G~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~~~~~  157 (342)
T d1f9va_          80 DGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDT  157 (342)
T ss_dssp             GTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC---------
T ss_pred             cccccceeeeeccCCccccccccC--cCchhHHHHHHHHhhhhhhhccccccceeeeeeeeccCeeEECCCCCCCccccc
Confidence            999999999999999999999996  689999999999987652     4788999999999   99998532       


Q ss_pred             -----ceeeecC-CCcEEEcCceEEecCChhhhC
Q psy17370        235 -----WRFESKP-SHEIYLSVSVLTDITKFIEVY  262 (262)
Q Consensus       235 -----l~i~ed~-~~~v~v~gl~~~~V~s~~e~l  262 (262)
                           +.++.+. .++++|.|++++.|.+.+|++
T Consensus       158 ~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~~~~  191 (342)
T d1f9va_         158 SIGLKHEIRHDQETKTTTITNVTSCKLESEEMVE  191 (342)
T ss_dssp             ----CCCEEEETTTTEEEETTCCCEECSSGGGHH
T ss_pred             cccceeeeeecCCCCcEEEeeeEEEEecchHHHH
Confidence                 4455554 478999999999999999974

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.04  E-value=0.0025  Score=51.62  Aligned_cols=50  Identities=20%  Similarity=0.378  Sum_probs=32.5

Q ss_pred             eeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370        139 YTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       139 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      ..|+||.-|- ...|+..|..+- .+++..-..+| .++-||.+|+||||-+.
T Consensus         5 ~~~tFdnF~v-g~~N~~a~~~~~-~~~~~~~~~~n-~l~l~G~~G~GKTHLl~   54 (213)
T d1l8qa2           5 PKYTLENFIV-GEGNRLAYEVVK-EALENLGSLYN-PIFIYGSVGTGKTHLLQ   54 (213)
T ss_dssp             TTCCSSSCCC-CTTTHHHHHHHH-HHHHTTTTSCS-SEEEECSSSSSHHHHHH
T ss_pred             CCCChhhccC-CCcHHHHHHHHH-HHHhCcCCCCC-cEEEECCCCCcHHHHHH
Confidence            4688998663 345666665432 44443333444 48899999999999773

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=92.60  E-value=0.011  Score=47.87  Aligned_cols=47  Identities=15%  Similarity=0.136  Sum_probs=27.6

Q ss_pred             ceeeCCCCCcchhhcccchhhHhhhhCCCce-----eEeeeeccCCCCceec
Q psy17370        144 DHCLGQDTDQTSVFTIIAQPLLDAAFNGYNV-----CLFAYGQTGSGKSYRG  190 (262)
Q Consensus       144 D~vf~~~~~q~~vy~~~~~plv~~~l~G~n~-----~ifaYG~tgSGKTyTm  190 (262)
                      +++.+.-...+.-++.+..-+...+++|...     .++-||+.|+|||.++
T Consensus        12 ~~~P~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~   63 (287)
T d1w5sa2          12 NYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA   63 (287)
T ss_dssp             TCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHH
Confidence            3333333333344444444444556666533     4677899999999877

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.32  E-value=0.028  Score=46.61  Aligned_cols=51  Identities=18%  Similarity=0.326  Sum_probs=38.4

Q ss_pred             eeeeceeeCCCCCcchhhcccchhhHh-hhhC--C--CceeEeeeeccCCCCceec
Q psy17370        140 TFKLDHCLGQDTDQTSVFTIIAQPLLD-AAFN--G--YNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       140 ~f~FD~vf~~~~~q~~vy~~~~~plv~-~~l~--G--~n~~ifaYG~tgSGKTyTm  190 (262)
                      .++||.|-+.+...+++.+.+..++.. ..+.  |  ....|+-||+.|+|||+.+
T Consensus         3 ~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~   58 (265)
T d1r7ra3           3 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA   58 (265)
T ss_dssp             CCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHH
T ss_pred             CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHH
Confidence            468999988888888888887766653 2332  2  2456999999999999875

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=88.97  E-value=0.05  Score=47.82  Aligned_cols=29  Identities=24%  Similarity=0.164  Sum_probs=25.5

Q ss_pred             hhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370        163 PLLDAAFNGYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       163 plv~~~l~G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      ..++.++..-++.|+--|+||||||.||.
T Consensus       148 ~~l~~l~~~~~GliLvtGpTGSGKSTTl~  176 (401)
T d1p9ra_         148 DNFRRLIKRPHGIILVTGPTGSGKSTTLY  176 (401)
T ss_dssp             HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred             HHHHHHHhhhhceEEEEcCCCCCccHHHH
Confidence            45677888889999999999999999994

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=87.03  E-value=0.094  Score=42.10  Aligned_cols=16  Identities=38%  Similarity=0.495  Sum_probs=14.1

Q ss_pred             eEeeeeccCCCCceec
Q psy17370        175 CLFAYGQTGSGKSYRG  190 (262)
Q Consensus       175 ~ifaYG~tgSGKTyTm  190 (262)
                      .|+-||++|+|||+..
T Consensus        34 ~ilL~GpPGtGKT~la   49 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLR   49 (273)
T ss_dssp             EEEEECCTTSCTHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4889999999999965

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=86.46  E-value=0.085  Score=42.06  Aligned_cols=28  Identities=21%  Similarity=0.147  Sum_probs=19.5

Q ss_pred             hhHhhhhC---CCceeEeeeeccCCCCceec
Q psy17370        163 PLLDAAFN---GYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       163 plv~~~l~---G~n~~ifaYG~tgSGKTyTm  190 (262)
                      .++...+.   +....++-||++|+|||+++
T Consensus        30 ~~l~~~l~~~~~~~~~lll~GppGtGKT~l~   60 (276)
T d1fnna2          30 ILLGNWLRNPGHHYPRATLLGRPGTGKTVTL   60 (276)
T ss_dssp             HHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred             HHHHHHHhCCCCCCCceEEECCCCCCHHHHH
Confidence            44444442   23457889999999999866

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.36  E-value=0.13  Score=40.45  Aligned_cols=28  Identities=21%  Similarity=0.382  Sum_probs=19.5

Q ss_pred             hhHhhhhC-CCceeEeeeeccCCCCceec
Q psy17370        163 PLLDAAFN-GYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       163 plv~~~l~-G~n~~ifaYG~tgSGKTyTm  190 (262)
                      ..+...++ +....++-||++|+|||.+.
T Consensus        22 ~~l~~~i~~~~~~~lll~Gp~G~GKTtl~   50 (237)
T d1sxjd2          22 TVLKKTLKSANLPHMLFYGPPGTGKTSTI   50 (237)
T ss_dssp             HHHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred             HHHHHHHHcCCCCeEEEECCCCCChHHHH
Confidence            34445554 44455889999999999755

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.69  E-value=0.11  Score=41.16  Aligned_cols=21  Identities=29%  Similarity=0.363  Sum_probs=16.8

Q ss_pred             CCCceeEeeeeccCCCCceec
Q psy17370        170 NGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       170 ~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      .|....++-||+.|+|||.++
T Consensus        42 ~~~~~~lll~Gp~G~GKTtla   62 (231)
T d1iqpa2          42 TGSMPHLLFAGPPGVGKTTAA   62 (231)
T ss_dssp             HTCCCEEEEESCTTSSHHHHH
T ss_pred             cCCCCeEEEECCCCCcHHHHH
Confidence            355556888999999999876

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.57  E-value=0.16  Score=40.58  Aligned_cols=25  Identities=16%  Similarity=0.082  Sum_probs=19.8

Q ss_pred             hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370        163 PLLDAAFNGYNVCLFAYGQTGSGKSYR  189 (262)
Q Consensus       163 plv~~~l~G~n~~ifaYG~tgSGKTyT  189 (262)
                      ..+..+++|.++.|.  ++||+|||.+
T Consensus        50 ~~i~~~l~g~~~~i~--apTGsGKT~~   74 (237)
T d1gkub1          50 MWAKRILRKESFAAT--APTGVGKTSF   74 (237)
T ss_dssp             HHHHHHHTTCCEECC--CCBTSCSHHH
T ss_pred             HHHHHHHCCCCEEEE--ecCCChHHHH
Confidence            446778999987665  5999999964

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.09  E-value=0.14  Score=40.38  Aligned_cols=25  Identities=24%  Similarity=0.239  Sum_probs=19.1

Q ss_pred             hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370        164 LLDAAFNGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       164 lv~~~l~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      .+..+++|.|+.+.  .+||||||.+.
T Consensus        31 aip~il~g~dvl~~--A~TGsGKTla~   55 (207)
T d1t6na_          31 CIPQAILGMDVLCQ--AKSGMGKTAVF   55 (207)
T ss_dssp             HHHHHHTTCCEEEE--CCTTSCHHHHH
T ss_pred             HHHHHHcCCCeEEE--ecccccccccc
Confidence            35567899996655  49999999864

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.01  E-value=0.18  Score=39.68  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=19.3

Q ss_pred             hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370        164 LLDAAFNGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       164 lv~~~l~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      .|..+++|.|+.+.  .+||||||.+.
T Consensus        33 aip~il~g~dvl~~--a~TGsGKTlay   57 (206)
T d1veca_          33 SIPIALSGRDILAR--AKNGTGKSGAY   57 (206)
T ss_dssp             HHHHHHTTCCEEEE--CCSSSTTHHHH
T ss_pred             HHHHHHcCCCEEee--ccCcccccccc
Confidence            35668899996655  59999999754

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=83.31  E-value=0.11  Score=40.37  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=19.1

Q ss_pred             hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370        164 LLDAAFNGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       164 lv~~~l~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      .|..+++|.|+.|.  -+||||||...
T Consensus        33 ai~~~l~g~~vlv~--apTGsGKT~~~   57 (206)
T d1oywa2          33 IIDTVLSGRDCLVV--MPTGGGKSLCY   57 (206)
T ss_dssp             HHHHHHTTCCEEEE--CSCHHHHHHHH
T ss_pred             HHHHHHcCCCEEEE--cCCCCCCcchh
Confidence            35667899886554  58999999865

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=82.77  E-value=0.14  Score=40.82  Aligned_cols=20  Identities=20%  Similarity=0.225  Sum_probs=15.2

Q ss_pred             CCceeEeeeeccCCCCceec
Q psy17370        171 GYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       171 G~n~~ifaYG~tgSGKTyTm  190 (262)
                      +....|+-.|+||+|||.|+
T Consensus         4 ~~~~vi~lvGptGvGKTTTi   23 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTI   23 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHH
Confidence            33445566799999999996

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.45  E-value=0.19  Score=39.83  Aligned_cols=25  Identities=24%  Similarity=0.345  Sum_probs=19.8

Q ss_pred             hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370        164 LLDAAFNGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       164 lv~~~l~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      .+..+++|.+  +++-.+||||||++.
T Consensus        40 aip~il~g~d--vl~~a~TGsGKT~a~   64 (212)
T d1qdea_          40 AIMPIIEGHD--VLAQAQSGTGKTGTF   64 (212)
T ss_dssp             HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred             HHHHHHcCCC--EEeecccccchhhhh
Confidence            3556789998  556779999999966

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.45  E-value=0.1  Score=40.79  Aligned_cols=25  Identities=28%  Similarity=0.448  Sum_probs=18.7

Q ss_pred             hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370        164 LLDAAFNGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       164 lv~~~l~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      .+..+++|.|+.  +-.+||||||.+.
T Consensus        31 aip~~l~G~dvi--i~a~TGSGKTlay   55 (209)
T d1q0ua_          31 IIPGALRGESMV--GQSQTGTGKTHAY   55 (209)
T ss_dssp             HHHHHHHTCCEE--EECCSSHHHHHHH
T ss_pred             HHHHHHCCCCeE--eecccccccceee
Confidence            345678899855  4569999999854

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.24  E-value=0.13  Score=40.01  Aligned_cols=25  Identities=24%  Similarity=0.383  Sum_probs=19.1

Q ss_pred             hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370        163 PLLDAAFNGYNVCLFAYGQTGSGKSYR  189 (262)
Q Consensus       163 plv~~~l~G~n~~ifaYG~tgSGKTyT  189 (262)
                      ..+..+++|.|+  +..++||||||++
T Consensus        32 ~ai~~l~~~~~~--il~apTGsGKT~~   56 (202)
T d2p6ra3          32 EAVEKVFSGKNL--LLAMPTAAGKTLL   56 (202)
T ss_dssp             HHHHHHTTCSCE--EEECSSHHHHHHH
T ss_pred             HHHHHHHcCCCE--EEEcCCCCchhHH
Confidence            446677888874  4567999999976

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase VlgB
species: Flatworm (Dugesia japonica) [TaxId: 6161]

Probab=81.10  E-value=0.23  Score=40.07  Aligned_cols=26  Identities=31%  Similarity=0.301  Sum_probs=19.6

Q ss_pred             hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370        163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       163 plv~~~l~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      ..+..+++|.|+.+.|  +||||||.+-
T Consensus        50 ~~ip~il~g~dvvi~a--~TGsGKTlay   75 (238)
T d1wrba1          50 NAIPAILEHRDIMACA--QTGSGKTAAF   75 (238)
T ss_dssp             HHHHHHHTTCCEEEEC--CTTSSHHHHH
T ss_pred             HHhhhhhCCCCEEEEC--CCCCCcceee
Confidence            3456678999976555  9999999854

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.99  E-value=0.23  Score=39.50  Aligned_cols=18  Identities=28%  Similarity=0.427  Sum_probs=15.1

Q ss_pred             ceeEeeeeccCCCCceec
Q psy17370        173 NVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       173 n~~ifaYG~tgSGKTyTm  190 (262)
                      .-.++-||+.|+|||.+.
T Consensus        52 ~~~lll~GPpG~GKTt~a   69 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAA   69 (253)
T ss_dssp             CSEEEEECSTTSSHHHHH
T ss_pred             CceEEEECCCCCCHHHHH
Confidence            346889999999999876

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.99  E-value=0.22  Score=39.85  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=18.5

Q ss_pred             HhhhhCCCceeEeeeeccCCCCceec
Q psy17370        165 LDAAFNGYNVCLFAYGQTGSGKSYRG  190 (262)
Q Consensus       165 v~~~l~G~n~~ifaYG~tgSGKTyTm  190 (262)
                      |..+++|.|..+  -.+||||||.+-
T Consensus        48 Ip~il~g~dvi~--~a~TGSGKTlay   71 (222)
T d2j0sa1          48 IKQIIKGRDVIA--QSQSGTGKTATF   71 (222)
T ss_dssp             HHHHHTTCCEEE--ECCTTSSHHHHH
T ss_pred             HHHHHCCCCeEE--EcCcchhhhhhh
Confidence            555789998665  459999999854

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=80.01  E-value=0.29  Score=34.62  Aligned_cols=19  Identities=26%  Similarity=0.209  Sum_probs=13.3

Q ss_pred             CCceeEeeeeccCCCCceecC
Q psy17370        171 GYNVCLFAYGQTGSGKSYRGD  191 (262)
Q Consensus       171 G~n~~ifaYG~tgSGKTyTm~  191 (262)
                      |.++  +-+++||||||+.++
T Consensus         7 ~~~~--il~~~tGsGKT~~~~   25 (140)
T d1yksa1           7 GMTT--VLDFHPGAGKTRRFL   25 (140)
T ss_dssp             TCEE--EECCCTTSSTTTTHH
T ss_pred             CCcE--EEEcCCCCChhHHHH
Confidence            5444  345679999998764