Psyllid ID: psy17474

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340---
MDQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLFVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKVLSLSLGLNQCYHYRLDLTSAITIAWT
cHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHccccccccccccHHHHHHcccc
cHHHHHHHHHHHccccHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHcccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHcHEccccccEEEEEcHHHHHHHHHc
MDQAIEALFDLCEDEDVSVRKQAIKDLpslckenneytpKVTDILGQLlqtndtteLSVVQSSIMTLCKNDIKGALKGMFNLieisngpvrEKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAelsksfdpsnpedvdrsiycslhcvpylcsaipstpfvSYLCEQvlpkldqipetkdeagglDNQLEALKLLAElspfyvvhedtpqhiTSIVDCLFVRKQAIKDlpslckenneytpKVTDILGQLlqtndtteLSVVQSSIMTLCKNDIKVLSLSLGLNQCYHYRLDLTSAITIAWT
MDQAIEALFdlcededvsVRKQAIkdlpslckenneyTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLIeisngpvrekCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAelsksfdpsnpEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLFVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKVLSLSLGLNQCYHYRLDLTSAITIAWT
MDQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLFVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKVLSLSLGLNQCYHYRLDLTSAITIAWT
******ALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIK*****************DRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIP******GGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLFVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKVLSLSLGLNQCYHYRLDLTSAITIAW*
*DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKM********EIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRL****AGQKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVV*EDTPQHITSIVDCLFVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKVLSLSLGLNQCYHYRLDLTSAITIAW*
MDQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLFVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKVLSLSLGLNQCYHYRLDLTSAITIAWT
MDQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLFVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKVLSLSLGLNQCYHYRLDLTSAITIAWT
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MDQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSPFYVVHEDTPQHITSIVDCLFVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKVLSLSLGLNQCYHYRLDLTSAITIAWT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query343 2.2.26 [Sep-21-2011]
Q5ZMW3 523 Apoptosis inhibitor 5 OS= yes N/A 0.688 0.451 0.435 1e-53
Q5R644 504 Apoptosis inhibitor 5 OS= yes N/A 0.688 0.468 0.443 2e-53
Q9BZZ5 524 Apoptosis inhibitor 5 OS= yes N/A 0.688 0.450 0.443 2e-53
O35841 504 Apoptosis inhibitor 5 OS= yes N/A 0.688 0.468 0.443 3e-53
Q7ZY79 523 Apoptosis inhibitor 5-B O N/A N/A 0.688 0.451 0.423 4e-51
Q6DDM4 524 Apoptosis inhibitor 5-A O N/A N/A 0.688 0.450 0.410 4e-49
Q9V431 536 Apoptosis inhibitor 5 hom yes N/A 0.612 0.391 0.403 2e-42
Q54CL0 606 Apoptosis inhibitor 5 hom yes N/A 0.309 0.174 0.318 3e-06
>sp|Q5ZMW3|API5_CHICK Apoptosis inhibitor 5 OS=Gallus gallus GN=API5 PE=2 SV=1 Back     alignment and function desciption
 Score =  210 bits (535), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/241 (43%), Positives = 163/241 (67%), Gaps = 5/241 (2%)

Query: 2   DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
           D AI A  DLCEDEDVS+R+QAIK+LP     +N   P+V DIL QLLQ++D+ E ++V 
Sbjct: 61  DSAINAQLDLCEDEDVSIRRQAIKELPQFATGDN--LPRVADILTQLLQSDDSAEFNLVN 118

Query: 62  SSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQ 121
           ++++++ K D KG L G+F+ I      VRE+ ++FL  K+K L  +++TKE+EE+ + +
Sbjct: 119 NALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPEEVLTKEVEEFILAE 178

Query: 122 CKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRS 181
            KK+L +VTG+EF+  M +L+  +  Q+++G+++L+E++   A+L ++F+PS+P+ VDR 
Sbjct: 179 SKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRL 238

Query: 182 IYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSP 241
           + C+   VP     + ST FV+Y CE VLP L  +    +   GLD QLE LKLLAE+S 
Sbjct: 239 LQCTRQAVPLFSKNVHSTKFVTYFCEHVLPNLSALTTPVE---GLDIQLEVLKLLAEMSS 295

Query: 242 F 242
           F
Sbjct: 296 F 296
Antiapoptotic factor that may have a role in protein assembly.
Gallus gallus (taxid: 9031)
>sp|Q5R644|API5_PONAB Apoptosis inhibitor 5 OS=Pongo abelii GN=API5 PE=2 SV=1 Back     alignment and function description
>sp|Q9BZZ5|API5_HUMAN Apoptosis inhibitor 5 OS=Homo sapiens GN=API5 PE=1 SV=3 Back     alignment and function description
>sp|O35841|API5_MOUSE Apoptosis inhibitor 5 OS=Mus musculus GN=Api5 PE=2 SV=2 Back     alignment and function description
>sp|Q7ZY79|API5B_XENLA Apoptosis inhibitor 5-B OS=Xenopus laevis GN=api5-b PE=2 SV=1 Back     alignment and function description
>sp|Q6DDM4|API5A_XENLA Apoptosis inhibitor 5-A OS=Xenopus laevis GN=api5-a PE=2 SV=1 Back     alignment and function description
>sp|Q9V431|API5_DROME Apoptosis inhibitor 5 homolog OS=Drosophila melanogaster GN=Aac11 PE=1 SV=1 Back     alignment and function description
>sp|Q54CL0|API5_DICDI Apoptosis inhibitor 5 homolog OS=Dictyostelium discoideum GN=api5 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query343
322794553 500 hypothetical protein SINV_03941 [Solenop 0.641 0.44 0.518 7e-60
307183123 504 Apoptosis inhibitor 5 [Camponotus florid 0.641 0.436 0.509 3e-59
383849591 526 PREDICTED: apoptosis inhibitor 5-like [M 0.641 0.418 0.5 7e-59
350423626 535 PREDICTED: apoptosis inhibitor 5-like [B 0.641 0.411 0.5 1e-58
340727647 535 PREDICTED: apoptosis inhibitor 5-like [B 0.641 0.411 0.5 1e-58
328780766 535 PREDICTED: apoptosis inhibitor 5-like [A 0.641 0.411 0.5 1e-58
307206149 526 Apoptosis inhibitor 5 [Harpegnathos salt 0.641 0.418 0.5 1e-57
357608472 562 putative Apoptosis inhibitor 5 [Danaus p 0.965 0.588 0.375 5e-56
242005063 527 Apoptosis inhibitor, putative [Pediculus 0.685 0.445 0.468 2e-55
410907549 527 PREDICTED: apoptosis inhibitor 5-like [T 0.790 0.514 0.414 1e-52
>gi|322794553|gb|EFZ17582.1| hypothetical protein SINV_03941 [Solenopsis invicta] Back     alignment and taxonomy information
 Score =  237 bits (604), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 115/222 (51%), Positives = 161/222 (72%), Gaps = 2/222 (0%)

Query: 2   DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
           DQAI+A  DLCEDED+++RKQAIKDLP+LCK+N E+T ++ DIL QLLQ  D++EL+VVQ
Sbjct: 38  DQAIDAHLDLCEDEDMAIRKQAIKDLPALCKDNKEHTARIADILAQLLQAEDSSELAVVQ 97

Query: 62  SSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQ 121
           +SIM+L K+D KG L G F+ I   +   RE+C++FL  K+K +G DI+TKE E+  I +
Sbjct: 98  NSIMSLMKSDPKGTLSGFFSQIINGDDGTRERCIKFLATKLKAIGHDIITKEPEDLLIAE 157

Query: 122 CKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRS 181
           CKK+L++VT DEF  IM++LAW+RL  ++AGQ+EL++I    AELS  F  +N E  +R 
Sbjct: 158 CKKVLQDVTADEFHSIMEILAWTRLGSTVAGQQELVDITIEQAELSVPFKHTNVEQWNRL 217

Query: 182 IYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQI--PETKD 221
           + C  H +P+  S I S+ FVSY+C QVLP L  +  P+ +D
Sbjct: 218 VQCVKHALPFFSSQIDSSKFVSYICVQVLPHLSLMTSPDGRD 259

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307183123|gb|EFN70040.1| Apoptosis inhibitor 5 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|383849591|ref|XP_003700428.1| PREDICTED: apoptosis inhibitor 5-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|350423626|ref|XP_003493540.1| PREDICTED: apoptosis inhibitor 5-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340727647|ref|XP_003402151.1| PREDICTED: apoptosis inhibitor 5-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|328780766|ref|XP_624077.3| PREDICTED: apoptosis inhibitor 5-like [Apis mellifera] gi|380028438|ref|XP_003697909.1| PREDICTED: apoptosis inhibitor 5-like [Apis florea] Back     alignment and taxonomy information
>gi|307206149|gb|EFN84229.1| Apoptosis inhibitor 5 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|357608472|gb|EHJ66027.1| putative Apoptosis inhibitor 5 [Danaus plexippus] Back     alignment and taxonomy information
>gi|242005063|ref|XP_002423394.1| Apoptosis inhibitor, putative [Pediculus humanus corporis] gi|212506438|gb|EEB10656.1| Apoptosis inhibitor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|410907549|ref|XP_003967254.1| PREDICTED: apoptosis inhibitor 5-like [Takifugu rubripes] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query343
UNIPROTKB|E2RHB3 524 API5 "Uncharacterized protein" 0.740 0.484 0.432 1.2e-51
UNIPROTKB|F1SHH7 524 API5 "Uncharacterized protein" 0.740 0.484 0.432 1.2e-51
UNIPROTKB|E1BEI0 482 API5 "Uncharacterized protein" 0.740 0.526 0.432 1.2e-51
UNIPROTKB|G3V1C3 510 API5 "Apoptosis inhibitor 5" [ 0.740 0.498 0.432 1.9e-51
UNIPROTKB|Q9BZZ5 524 API5 "Apoptosis inhibitor 5" [ 0.740 0.484 0.432 1.9e-51
UNIPROTKB|Q5R644 504 API5 "Apoptosis inhibitor 5" [ 0.740 0.503 0.432 1.9e-51
MGI|MGI:1888993 504 Api5 "apoptosis inhibitor 5" [ 0.740 0.503 0.432 1.9e-51
RGD|1309772 504 Api5 "apoptosis inhibitor 5" [ 0.740 0.503 0.432 1.9e-51
UNIPROTKB|B4E283 513 API5 "Apoptosis inhibitor 5" [ 0.740 0.495 0.432 1.9e-51
UNIPROTKB|Q5ZMW3 523 API5 "Apoptosis inhibitor 5" [ 0.740 0.485 0.424 1.9e-51
UNIPROTKB|E2RHB3 API5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 112/259 (43%), Positives = 169/259 (65%)

Query:     2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
             D AI A  DLCEDEDVS+R+QAIK+LP      N   P+V DIL QLLQT+D+ E ++V 
Sbjct:    61 DSAINAQLDLCEDEDVSIRRQAIKELPQFATGEN--LPRVADILTQLLQTDDSAEFNLVN 118

Query:    62 SSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQ 121
             ++++++ K D KG L G+F+ I      VRE+ ++FL  K+K L  +++TKE+EE  + +
Sbjct:   119 NALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTE 178

Query:   122 CKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRS 181
              KK+L +VTG+EF+  M +L+  +  Q+++G+++L+E++   A+L ++F+PS+P+ VDR 
Sbjct:   179 SKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRL 238

Query:   182 IYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSP 241
             + C+   VP     + ST FV+Y CEQVLP L  +  T  E  GLD QLE LKLLAE+S 
Sbjct:   239 LQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLSSLT-TPVE--GLDIQLEVLKLLAEMSS 295

Query:   242 FYVVHEDTPQHITSIVDCL 260
             F    E    ++  + D L
Sbjct:   296 FCGDMEKLETNLRKLFDKL 314
GO:0043066 "negative regulation of apoptotic process" evidence=IEA
GO:0017134 "fibroblast growth factor binding" evidence=IEA
GO:0005681 "spliceosomal complex" evidence=IEA
UNIPROTKB|F1SHH7 API5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BEI0 API5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|G3V1C3 API5 "Apoptosis inhibitor 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BZZ5 API5 "Apoptosis inhibitor 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R644 API5 "Apoptosis inhibitor 5" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
MGI|MGI:1888993 Api5 "apoptosis inhibitor 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309772 Api5 "apoptosis inhibitor 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|B4E283 API5 "Apoptosis inhibitor 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZMW3 API5 "Apoptosis inhibitor 5" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query343
pfam05918 543 pfam05918, API5, Apoptosis inhibitory protein 5 (A 9e-59
pfam05918 543 pfam05918, API5, Apoptosis inhibitory protein 5 (A 2e-10
>gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5) Back     alignment and domain information 
 Score =  197 bits (503), Expect = 9e-59
 Identities = 99/280 (35%), Positives = 152/280 (54%), Gaps = 17/280 (6%)

Query: 2   DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
            +A +A FDLC+D+D  VR QAI+ LP  CK+  + T K+ D+L QLL T +  E   V 
Sbjct: 58  TEAFDAQFDLCDDDDTGVRVQAIRGLPLFCKDTPDATSKIGDVLVQLLNTEEPVERDAVH 117

Query: 62  SSIMTLCKNDIKGALKGMFNLIEIS---NGPVREKCLRFLVPKIKMLGRDIMT--KEIEE 116
            ++M+L + D K ++  +F  I  +   +  +REK L+F+  K+  L  +++   KE+E 
Sbjct: 118 KALMSLIRQDTKASITALFQHISATLTTDEQIREKVLKFIRDKVLPLKGELLKPQKEMER 177

Query: 117 YTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLA---GQKELMEIIKHHAELSKSFDPS 173
           +  D  KK L++VTGDEF   MD L    +    A     +EL+EII+  A+L+ +F   
Sbjct: 178 HITDLIKKSLQDVTGDEFHMFMDFLGSLSIFGGKAPIERMQELVEIIEGQADLNNTFIAV 237

Query: 174 NPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEAL 233
           + E V+R I C+    PY     PS+ F++YL +++LP  D +PE +        +L  L
Sbjct: 238 DDEVVERFIQCASAAAPYFSRGAPSSAFLAYLNKKILPTFDMLPEER--------KLRLL 289

Query: 234 KLLAELSPFYVVHEDTPQHITSIVDCLFVRKQAIKDLPSL 273
           K LAE+SP Y   +D  Q + SIV+ L          PS 
Sbjct: 290 KALAEMSP-YTTAQDARQRLPSIVNLLLEYMPLGDTPPSF 328

This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterized by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in human chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors. Length = 543
>gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 343
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 100.0
KOG2213|consensus460 100.0
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 99.72
KOG2213|consensus 460 98.63
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 97.35
PF01602 526 Adaptin_N: Adaptin N terminal region; InterPro: IP 97.35
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.1
PTZ00429 746 beta-adaptin; Provisional 96.96
PF14500262 MMS19_N: Dos2-interacting transcription regulator 96.81
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 96.37
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.35
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 96.23
PTZ00429 746 beta-adaptin; Provisional 95.97
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 95.73
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 95.64
PF1036392 DUF2435: Protein of unknown function (DUF2435) 95.52
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 95.28
PRK09687280 putative lyase; Provisional 94.5
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 94.48
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 93.82
KOG2025|consensus 892 93.4
PRK09687280 putative lyase; Provisional 93.4
KOG1062|consensus 866 93.1
KOG2171|consensus 1075 92.2
KOG1061|consensus 734 91.72
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 90.87
KOG1020|consensus 1692 90.77
KOG2025|consensus 892 90.52
COG5096 757 Vesicle coat complex, various subunits [Intracellu 90.06
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 89.04
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 88.86
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 87.71
KOG1061|consensus 734 87.42
KOG2171|consensus 1075 86.77
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 86.77
KOG0166|consensus514 85.09
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 84.37
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 83.99
PF11935239 DUF3453: Domain of unknown function (DUF3453); Int 80.97
KOG2259|consensus 823 80.36
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 80.33
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information 
Probab=100.00  E-value=1.6e-79  Score=628.40  Aligned_cols=255  Identities=48%  Similarity=0.805  Sum_probs=219.0

Q ss_pred             hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHH
Q psy17474          2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFN   81 (343)
Q Consensus         2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~   81 (343)
                      |+||||++|||||||+.||+||||+||.+||+||+|++||||||+|||||||++|+.+||+||++||++|||+||+|+|+
T Consensus        58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~  137 (556)
T PF05918_consen   58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFS  137 (556)
T ss_dssp             HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhh---cCCchHHHHHHHHhhHhhhhhhhhhch--HHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccc---cChHHH
Q psy17474         82 LIE---ISNGPVREKCLRFLVPKIKMLGRDIMT--KEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLS---QSLAGQ  153 (343)
Q Consensus        82 qI~---~~de~vRe~~lkFl~~kl~~l~~~ll~--~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~---~t~~g~  153 (343)
                      ||.   +|||.+|||+|+||++|++++++++++  +|+|++|+++|||+|+|||++||++||++|+++++|   +|++||
T Consensus       138 ~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~  217 (556)
T PF05918_consen  138 QIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGR  217 (556)
T ss_dssp             HHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHH
T ss_pred             HHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHH
Confidence            999   789999999999999999999999999  799999999999999999999999999999999995   799999


Q ss_pred             HHHHHHHHHHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHH
Q psy17474        154 KELMEIIKHHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEAL  233 (343)
Q Consensus       154 qeLv~li~eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lL  233 (343)
                      |+|+++|.+||+|+++|+++|+++|||+|+|+++|+||||++++|++||+|||++|||+|++|++        +.|+++|
T Consensus       218 qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e--------~~kl~lL  289 (556)
T PF05918_consen  218 QELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPE--------DRKLDLL  289 (556)
T ss_dssp             HHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-------------HHHHHH
T ss_pred             HHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCCh--------HHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999965        6999999


Q ss_pred             HHHHhhcCCCCCCCCchhhHHHHHHHHHHHHh
Q psy17474        234 KLLAELSPFYVVHEDTPQHITSIVDCLFVRKQ  265 (343)
Q Consensus       234 K~lAEls~~~~~~e~~pqllesi~d~LL~r~q  265 (343)
                      |++||+|||||++| ++++++++|+.|+.+++
T Consensus       290 k~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP  320 (556)
T PF05918_consen  290 KLLAELSPFCGAQD-ARQLLPSIFQLLKKYMP  320 (556)
T ss_dssp             HHHHHHHTT----T-HHHHHHHHHHHHHTTS-
T ss_pred             HHHHHHcCCCCccc-HHHHHHHHHHHHHHhCC
Confidence            99999999999998 99999999999985544

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
>KOG2213|consensus Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG2213|consensus Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG2025|consensus Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1062|consensus Back     alignment and domain information
>KOG2171|consensus Back     alignment and domain information
>KOG1061|consensus Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG1020|consensus Back     alignment and domain information
>KOG2025|consensus Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1061|consensus Back     alignment and domain information
>KOG2171|consensus Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG0166|consensus Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG2259|consensus Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query343
3v6a_A474 Helical Repeat Structure Of Apoptosis Inhibitor 5 R 1e-54
3v6a_A 474 Helical Repeat Structure Of Apoptosis Inhibitor 5 R 6e-07
3u0r_A 507 Helical Repeat Structure Of Apoptosis Inhibitor 5 R 1e-54
3u0r_A 507 Helical Repeat Structure Of Apoptosis Inhibitor 5 R 7e-07
>pdb|3V6A|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals Protein- Protein Interaction Modules Length = 474 Back     alignment and structure 
Iteration: 1

 Score =  210 bits (534), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 107/241 (44%), Positives = 162/241 (67%), Gaps = 5/241 (2%)
Query: 2   DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
           D AI A  DLCEDEDVS+R+QAIK+LP       E  P+V DIL QLLQT+D+ E ++V 
Sbjct: 81  DSAINAQLDLCEDEDVSIRRQAIKELPQFA--TGENLPRVADILTQLLQTDDSAEFNLVN 138
Query: 62  SSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQ 121
           ++++++ K D KG L G+F+ I      VRE+ ++FL  K+K L  +++TKE+EE  + +
Sbjct: 139 NALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTE 198
Query: 122 CKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRS 181
            KK+L +VTG+EF+  M +L+  +  Q+++G+++L+E++   A+L ++F+PS+P+ VDR 
Sbjct: 199 SKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRL 258
Query: 182 IYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSP 241
           + C+   VP     + ST FV+Y CEQVLP L  +    +   GLD QLE LKLLAE+S 
Sbjct: 259 LQCTRQAVPLFSQNVHSTRFVTYFCEQVLPNLGTLTTPVE---GLDIQLEVLKLLAEMSS 315
Query: 242 F 242
           F
Sbjct: 316 F 316
>pdb|3V6A|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals Protein- Protein Interaction Modules Length = 474 Back     alignment and structure
>pdb|3U0R|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals Protein- Protein Interaction Modules Length = 507 Back     alignment and structure
>pdb|3U0R|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals Protein- Protein Interaction Modules Length = 507 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query343
3u0r_A 507 Apoptosis inhibitor 5; heat repeat, armadillo repe 9e-69
3u0r_A 507 Apoptosis inhibitor 5; heat repeat, armadillo repe 8e-09
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 2e-05
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 3e-04
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 5e-04
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 6e-04
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 7e-04
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Length = 507 Back     alignment and structure
 Score =  222 bits (567), Expect = 9e-69
 Identities = 109/259 (42%), Positives = 167/259 (64%), Gaps = 5/259 (1%)

Query: 2   DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
           D AI A  DLCEDEDVS+R+QAIK+LP       E  P+V DIL QLLQT+D+ E ++V 
Sbjct: 64  DSAINAQLDLCEDEDVSIRRQAIKELPQFAT--GENLPRVADILTQLLQTDDSAEFNLVN 121

Query: 62  SSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQ 121
           ++++++ K D KG L G+F+ I      VRE+ ++FL  K+K L  +++TKE+EE  + +
Sbjct: 122 NALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTE 181

Query: 122 CKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRS 181
            KK+L +VTG+EF+  M +L+  +  Q+++G+++L+E++   A+L ++F+PS+P+ VDR 
Sbjct: 182 SKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRL 241

Query: 182 IYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSP 241
           + C+   VP     + ST FV+Y CEQVLP L  +    +    LD QLE LKLLAE+S 
Sbjct: 242 LQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEG---LDIQLEVLKLLAEMSS 298

Query: 242 FYVVHEDTPQHITSIVDCL 260
           F    E    ++  + D L
Sbjct: 299 FCGDMEKLETNLRKLFDKL 317
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Length = 507 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query343
3u0r_A 507 Apoptosis inhibitor 5; heat repeat, armadillo repe 100.0
3u0r_A 507 Apoptosis inhibitor 5; heat repeat, armadillo repe 99.68
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 98.3
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 98.07
1qgr_A 876 Protein (importin beta subunit); transport recepto 98.06
2vgl_B 591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 98.04
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 98.03
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.0
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 97.92
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 97.75
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 97.7
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 97.66
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 97.62
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 97.61
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 97.61
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 97.57
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 97.56
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 97.55
2vgl_B 591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 97.54
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 97.52
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 97.52
1qgr_A 876 Protein (importin beta subunit); transport recepto 97.45
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 97.44
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 97.34
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.34
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 97.33
2vgl_A 621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 97.24
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 97.17
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.16
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 97.02
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 96.99
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 96.96
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 96.95
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 96.93
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 96.85
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 96.63
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 96.57
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 96.55
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 96.54
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 96.49
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 96.46
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 96.45
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 96.41
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 96.29
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 96.17
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 96.07
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 95.98
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 95.56
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 95.3
2vgl_A 621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 95.2
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 95.11
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 94.95
3now_A 810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 94.9
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 94.52
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 94.45
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 94.43
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 93.72
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 93.54
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 92.52
2x19_B 963 Importin-13; nuclear transport, protein transport; 92.24
2x1g_F 971 Cadmus; transport protein, developmental protein, 91.53
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 90.69
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 90.24
1xm9_A 457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 90.09
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 87.98
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 87.45
2x1g_F 971 Cadmus; transport protein, developmental protein, 87.09
3gs3_A 257 Symplekin, LD45768P; helix-turn-helix heat repeat 87.0
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 85.75
2x19_B 963 Importin-13; nuclear transport, protein transport; 85.46
3o2t_A 386 Symplekin; heat repeat, scaffold, protein binding; 84.44
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 82.77
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 81.22
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 80.48
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 80.32
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
Probab=100.00  E-value=2.7e-83  Score=646.02  Aligned_cols=264  Identities=42%  Similarity=0.719  Sum_probs=255.5

Q ss_pred             hHHHHHHHhhccccchhHHHHHhhhhhhhhhccCCcchhhHhHHHHhhccCChhHHHHHHHHHHHHHhhChhhhHHHHHH
Q psy17474          2 DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQSSIMTLCKNDIKGALKGMFN   81 (343)
Q Consensus         2 e~Ai~a~lDLcEDeD~~IR~qAIk~Lp~lck~~~e~v~kiaDVL~QLLqtdd~~E~~~V~~sL~~Llk~Dpk~tL~~lf~   81 (343)
                      |+||||++|||||||++||+||||+||++||+  +|++||||||+|||||||++|+.+|||||++|||+|||+||+|+|+
T Consensus        64 ~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~  141 (507)
T 3u0r_A           64 DSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFS  141 (507)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            78999999999999999999999999999999  9999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCchHHHHHHHHhhHhhhhhhhhhchHHHHHHHHHHHHHhcccCChhHHHHHHHHHhhcccccChHHHHHHHHHHH
Q psy17474         82 LIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQCKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIK  161 (343)
Q Consensus        82 qI~~~de~vRe~~lkFl~~kl~~l~~~ll~~E~E~~i~~~ikKvL~dVT~~EF~l~m~lL~~l~~~~t~~g~qeLv~li~  161 (343)
                      ||.+|||.+|||+|+||++|+++++.+++++|+|++|+++|||+|+|||++||++||++|+++++|+|++|||+|++++.
T Consensus       142 ~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~  221 (507)
T 3u0r_A          142 QILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVA  221 (507)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHH
T ss_pred             HHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccCCCCCCCCchhhhhHHhhHHhhhhhhccCCCChhHHHHHHHhhcCCCCCCCCcccccCCchhhHHHHHHHHhhcC
Q psy17474        162 HHAELSKSFDPSNPEDVDRSIYCSLHCVPYLCSAIPSTPFVSYLCEQVLPKLDQIPETKDEAGGLDNQLEALKLLAELSP  241 (343)
Q Consensus       162 eqa~Ld~~f~~sD~e~vdRli~C~~~Alp~fS~~v~St~fv~y~~~~vlP~l~~L~~~~~e~~~~~~kl~lLK~lAEls~  241 (343)
                      +||+|+++|+|+|+|+|||+|+|+++|+||||+|++||+||+|||++|||+|++|++++   ++++.||++||++|||||
T Consensus       222 eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~---~~~~~kL~LLK~lAE~s~  298 (507)
T 3u0r_A          222 EQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPV---EGLDIQLEVLKLLAEMSS  298 (507)
T ss_dssp             HHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC-----CCCHHHHHHHHHHHHHT
T ss_pred             HHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccc---cchHHHHHHHHHHHHHcc
Confidence            99999999999999999999999999999999999999999999999999999999975   344699999999999999


Q ss_pred             CCCCCCCchhhHHHHHHHHHHHHhhhhccchhh
Q psy17474        242 FYVVHEDTPQHITSIVDCLFVRKQAIKDLPSLC  274 (343)
Q Consensus       242 ~~~~~e~~pqllesi~d~LL~r~qAik~lp~~c  274 (343)
                      |||++++++++++++|+.|+.+++    +|+..
T Consensus       299 ~~~~~e~a~~~l~~iy~~L~~ymP----~~p~~  327 (507)
T 3u0r_A          299 FCGDMEKLETNLRKLFDKLLEYMP----LPPEE  327 (507)
T ss_dssp             TCCCCTTHHHHHHHHHHHHHTTSC----CCC--
T ss_pred             CCCccchHHHHHHHHHHHHHHHCC----CCccc
Confidence            999999999999999999999998    66654
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 343
d1oyza_276 a.118.1.16 (A:) Hypothetical protein YibA {Escheri 2e-04
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 0.004
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 21/237 (8%), Positives = 53/237 (22%), Gaps = 15/237 (6%)

Query: 2   DQAIEALFDLCEDEDVSVRKQAIKDLPSLCKENNEYTPKVTDILGQLLQTNDTTELSVVQ 61
             A+    + C D++   R      L  +             +    L        +   
Sbjct: 49  QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAI 108

Query: 62  SSIMTLCKNDIKGALKGMFNLIEISNGPVREKCLRFLVPKIKMLGRDIMTKEIEEYTIDQ 121
            S    CK +   + K +      +                 +  +  +   I       
Sbjct: 109 ESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDP- 167

Query: 122 CKKILRNVTGDEFMQIMDLLAWSRLSQSLAGQKELMEIIKHHAELSKSFDPSNPEDVDRS 181
                     +  ++     A +      +  ++    +          +        + 
Sbjct: 168 ----------NGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD 217

Query: 182 IYCSLHCVPYLCSAIPSTPFVSYLCE----QVLPKLDQIPETKDEAGGLDNQLEALK 234
                     L         +    E     +LP LD +    D+   + + ++ LK
Sbjct: 218 KRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKLK 274

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query343
d2vglb_ 579 Adaptin beta subunit N-terminal fragment {Human (H 98.13
d1b3ua_588 Constant regulatory domain of protein phosphatase 97.93
d1b3ua_588 Constant regulatory domain of protein phosphatase 97.86
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.43
d2vgla_ 584 Adaptin alpha C subunit N-terminal fragment {Mouse 97.39
d2vglb_ 579 Adaptin beta subunit N-terminal fragment {Human (H 97.38
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 97.16
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 97.13
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 97.07
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 96.92
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 96.92
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 96.81
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 96.56
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 96.43
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.37
d2vgla_ 584 Adaptin alpha C subunit N-terminal fragment {Mouse 96.29
d1qbkb_ 888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 96.05
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 95.98
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 95.97
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 95.96
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 95.92
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 95.9
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 95.69
d1ibrb_ 458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 95.29
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 95.24
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 95.05
d1xm9a1 457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 94.95
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 94.11
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 91.06
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 90.95
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 82.27
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure