Psyllid ID: psy17484

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MTKRERSPSPSEPMSPLTISPPSPADSRKTNCKESSDKSKEDSELWSTVEAQAAFLGPNIWDKTLPYDSDLKVMLSPLVLSTGKTNCKESSDKSKEDSELWSTVEAQAAFLGPNIWDKTLPYDSDLKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPAANLTGGHTTTTLQNVTSTISGRLSPCGSSQASVMTKRERSPSPSEPMSPLTISPPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEMERLKKENLSLRDKLSKFTDLLS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEccccccccccccccccHHHcccccccHcHHHHHHHHHccccccccccccccccccccHHHccccccccccccccccccccccccccccHHcccccHHHcccccccccEEccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccHHHccccHHHHHHHEEcccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtkrerspspsepmspltisppspadsrktnckessdkskedSELWSTVEAQAAflgpniwdktlpydsdlkvmlsplvlstgktnckessdkskedSELWSTVEAQAAflgpniwdktlpydsdlkyvdldeflsdngipvdgntsqtstggaptpaanltgghttttLQNVtstisgrlspcgssqasvmtkrerspspsepmspltisppspadstlsftsstrdfdprsrtfsdeelkpqpmvkksrKQNMGLRQEMERLKKENLSLRDKLSKFTDLLS
Flexible Loop (DISEMBL)
mtkrerspspsepmspltisppspadsrktNCKEssdkskedseLWSTVEAQAAFLGPNIWDKTLPYDSDLKVMLSPLvlstgktnckessdkskedseLWSTVEAQAaflgpniwdktLPYDSDLKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPAANLTGGHTTTTLQNVTstisgrlspcgssqasvmtkrerspspsepmspltisppspADSTLSftsstrdfdprsrtfsdeelkpqpmvkksrkqnmglRQEMERlkkenlslrdklskftdlls
Low Complexity Region (SEG)
MTKrerspspsepmspLTISPPSPADSRKTNCkessdkskedseLWSTVEAQAAFLGPNIWDKTLPYDSDLKVMLSPLVLSTGKTNCkessdkskedseLWSTVEAQAAFLGPNIWDKTLPYDSDLKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPAANLTGGHTTTTLQNVTSTISGRLSPCGSSQASVMTKrerspspsepmspLTISPPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEMERLKKENLSLRDKLSKFTDLLS
Disordered region (IsUnstruct)
********************************************LWSTVEAQAAFLGPNIWDKTLPYDSDLKVMLSPLVLS******************LWSTVEAQAAFLGPNIWDKTLPYDSDLKYVDLDEFLSDNG************************************************************************************************************************************************
Disordered Region (DISOPRED)
*********************************************WSTVEAQAAFLGPNIWDKTLPYDS**********************************VEAQAAFLGPNIWDKTLPYDSDLKYVDLDEFLSD***************************************************************************************************************************ME*********RDKLSKFTDL**
Disordered Region (DISEMBL)
**********************************************STVEAQAAFLGPNIWDKTLPYDSDLKVMLSPLVLSTGK*****************STVEAQAAFLGPNIWDKTLPYDSDLKYVDLDEFLSDNGIPVDGN*********PTPAANLTGGHTTTTLQNVTST**********************************************************TFSDEELKPQPMVKKSRKQNMGLRQEMERLKKENLSLRDKLSKFTDLLS
Disordered Region (DISPRO)
*******************************CKESS****EDSELWSTVEAQAAFLGPNIWDKTLPYDSDLKVMLSPLVLS********************STVEAQAAFLGPNIWDKTLPYDSDLKYVDLDEFLSDNGIPV***********************************************************SEPMSPLTISPPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEMERLKKENLSLRDKLSKFT****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTKRERSPSPSEPMSPLTISPPSPADSRKTNCKESSDKSKEDSELWSTVEAQAAFLGPNIWDKTLPYDSDLKVMLSPLVLSTGKTNCKESSDKSKEDSELWSTVEAQAAFLGPNIWDKTLPYDSDLKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPAANLTGGHTTTTLQNVTSTISGRLSPCGSSQASVMTKRERSPSPSEPMSPLTISPPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	283	2.2.26 [Sep-21-2011]
Q8BW74	295	Hepatic leukemia factor O	yes	N/A	0.643	0.616	0.377	8e-23
Q16534	295	Hepatic leukemia factor O	yes	N/A	0.498	0.477	0.409	1e-21
Q64709	295	Hepatic leukemia factor O	yes	N/A	0.498	0.477	0.403	3e-21
Q92172	319	Transcription factor VBP	no	N/A	0.646	0.573	0.351	3e-15
P97516	221	Thyrotroph embryonic fact	N/A	N/A	0.618	0.791	0.347	2e-14
Q9JLC6	301	Thyrotroph embryonic fact	no	N/A	0.572	0.538	0.364	4e-14
Q10587	303	Thyrotroph embryonic fact	no	N/A	0.579	0.541	0.357	5e-14
P41224	301	Thyrotroph embryonic fact	no	N/A	0.575	0.541	0.361	6e-14
Q10586	325	D site-binding protein OS	no	N/A	0.505	0.44	0.331	2e-12
Q60925	325	D site-binding protein OS	no	N/A	0.530	0.461	0.325	3e-11

>sp|Q8BW74|HLF_MOUSE Hepatic leukemia factor OS=Mus musculus GN=Hlf PE=2 SV=1

 Score =  107 bits (268), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/204 (37%), Positives = 103/204 (50%), Gaps = 22/204 (10%)

Query: 66  PYDSDLKVMLSPLVLSTGKTNC--KESSDKSKEDSELWSTVEAQAAFLGPNIWDKTLPYD 123
           PY     ++ +PL L     +   KE     K D E  S    Q+AFLGP +WDKTLPYD
Sbjct: 18  PYGVLRSLLENPLKLPLHPEDAFSKEKDKGKKLDDESSSPTVPQSAFLGPTLWDKTLPYD 77

Query: 124 SD---LKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPAANLTGGHTTTTLQNVTSTISGR 180
            D   L+Y+DL+EFLS+NGIP     S +    +P P        T  ++ +++S  +  
Sbjct: 78  GDTFQLEYMDLEEFLSENGIP----PSPSQHDHSPHPPGLQPASSTAPSVMDLSSRATAP 133

Query: 181 LSP------CGSSQ---ASVMTKRERSPSPSEP---MSPLTISPPSPADSTLSFTSSTRD 228
           L P      C  S      ++     +PSP +P     P+   P  PAD  LS       
Sbjct: 134 LHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYEP-DPADLALSSIPGQEM 192

Query: 229 FDPRSRTFSDEELKPQPMVKKSRK 252
           FDPR R FS+EELKPQPM+KK+RK
Sbjct: 193 FDPRKRKFSEEELKPQPMIKKARK 216

Mus musculus (taxid: 10090)

>sp|Q16534|HLF_HUMAN Hepatic leukemia factor OS=Homo sapiens GN=HLF PE=2 SV=1

 Score =  103 bits (257), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 87/161 (54%), Gaps = 20/161 (12%)

Query: 107 QAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPAANLTG 163
           Q+AFLGP +WDKTLPYD D   L+Y+DL+EFLS+NGIP     S +    +P P      
Sbjct: 61  QSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIP----PSPSQHDHSPHPPGLQPA 116

Query: 164 GHTTTTLQNVTSTISGRLSP------CGSS---QASVMTKRERSPSPSEP---MSPLTIS 211
                ++ +++S  S  L P      C  S      ++     +PSP +P     P+   
Sbjct: 117 SSAAPSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYE 176

Query: 212 PPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRK 252
            P PAD  LS       FDPR R FS+EELKPQPM+KK+RK
Sbjct: 177 -PDPADLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARK 216

Homo sapiens (taxid: 9606)

>sp|Q64709|HLF_RAT Hepatic leukemia factor OS=Rattus norvegicus GN=Hlf PE=2 SV=1

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 88/161 (54%), Gaps = 20/161 (12%)

Query: 107 QAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPAANLTG 163
           Q+AFLGP +WDKTLPYD D   L+Y+DL+EFLS+NGIP     S +    +P P      
Sbjct: 61  QSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIP----PSPSQHDHSPHPPGLQPA 116

Query: 164 GHTTTTLQNVTSTISGRLSP------CGSSQ---ASVMTKRERSPSPSEP---MSPLTIS 211
             T  ++ +++S  +  L P      C  +      ++     +PSP +P     P+   
Sbjct: 117 SSTAPSVMDLSSRATAPLHPGIPSPNCMQNPIRPGQLLPANRNTPSPIDPDTIQVPVGYE 176

Query: 212 PPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRK 252
           P  PAD  LS       FDPR R FS+EELKPQPM+KK+RK
Sbjct: 177 P-DPADLALSSIPGPEMFDPRKRKFSEEELKPQPMIKKARK 216

Rattus norvegicus (taxid: 10116)

>sp|Q92172|TEF_CHICK Transcription factor VBP OS=Gallus gallus GN=TEF PE=1 SV=2

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/199 (35%), Positives = 101/199 (50%), Gaps = 16/199 (8%)

Query: 88  KESSDKSKEDSELWSTVEAQAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVDG 144
           KE   K +ED    ++  A +A L P IWDKT+PYD +   L+Y+DLDEFL +NGIP   
Sbjct: 62  KEKKIKLEEDEAAAASTMAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIP--S 119

Query: 145 NTSQTSTGGAP-TPAANLT----GGHTTTTLQNVTSTISGRLSPCGSSQASVMTKRERSP 199
           + +       P  P A L        +T +  + +ST   + S   SS  S       +P
Sbjct: 120 SPTHLDLNQNPLMPVAKLEEKEPASASTGSPVSSSSTAVYQQSEAASSTESPPQNERNTP 179

Query: 200 SPSEP--MSPLTISPPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGL 257
           SP +P  +       P PAD  LS       F+PR   F++E+LKPQPM+KK++K  +  
Sbjct: 180 SPIDPDCVEVEVNFNPDPADLVLSSVPGGELFNPRKHKFTEEDLKPQPMIKKAKKVFVPD 239

Query: 258 RQEME----RLKKENLSLR 272
            Q+ E    R KK N++ +
Sbjct: 240 EQKDEKYWTRRKKNNVAAK 258

Transcription factor that binds to and transactivates the vitellogenin II (VTG2) promoter. Binds to the palindromic sequence 5'-GTTTACATAAAC-3'.

Gallus gallus (taxid: 9031)

>sp|P97516|TEF_PHOSU Thyrotroph embryonic factor (Fragment) OS=Phodopus sungorus GN=TEF PE=2 SV=1

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 97/190 (51%), Gaps = 15/190 (7%)

Query: 95  KEDSELWSTVEAQAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVDGNTSQTST 151
           +ED    ++  A +A L P IWDKT+PYD +   L+Y+DLDEFL +NGIP    +     
Sbjct: 2   EEDESAAASTMAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPA---SPTHLA 58

Query: 152 GGAPTPAANLTGGHTTTTLQNVTSTISGRL---SPCGSSQASVMTKRERSPSPSEP--MS 206
                P A L G  + ++      + S  +   S   SS  S + K   +PSP +P  + 
Sbjct: 59  QNLLLPVAELEGKESASSSTASPPSSSTAVFQPSETVSSTESSLEKERETPSPIDPNCVE 118

Query: 207 PLTISPPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEME---- 262
                 P PAD  LS       F+PR   F++E+LKPQPM+KK++K  +   Q+ E    
Sbjct: 119 VDVNFNPDPADLVLSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWT 178

Query: 263 RLKKENLSLR 272
           R KK N++ +
Sbjct: 179 RRKKNNVAAK 188

Transcription factor that binds to and transactivates the TSHB promoter. Binds to a minimal DNA-binding sequence 5'-[TC][AG][AG]TTA[TC][AG]-3'.

Phodopus sungorus (taxid: 10044)

>sp|Q9JLC6|TEF_MOUSE Thyrotroph embryonic factor OS=Mus musculus GN=Tef PE=2 SV=1

 Score = 78.6 bits (192), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 96/181 (53%), Gaps = 19/181 (10%)

Query: 106 AQAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVD-GNTSQTSTGGAPTPAANL 161
           A +A L P IWDKT+PYD +   L+Y+DLDEFL +NGIP    + +Q        P A L
Sbjct: 71  AVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAQNLL----LPVAEL 126

Query: 162 TGGHTTTTLQNVTSTISGRL---SPCGSSQASVMTKRERSPSPSEPMSPLTISP---PSP 215
            G  + ++      + S  +   S   SS  S + K   +PSP +P S + +     P P
Sbjct: 127 EGKESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDP-SCVEVDVNFNPDP 185

Query: 216 ADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEME----RLKKENLSL 271
           AD  LS       F+PR   F++E+LKPQPM+KK++K  +   Q+ E    R KK N++ 
Sbjct: 186 ADLVLSSVPGGELFNPRKHRFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAA 245

Query: 272 R 272
           +
Sbjct: 246 K 246

Transcription factor that binds to and transactivates the TSHB promoter. Binds to a minimal DNA-binding sequence 5'-[TC][AG][AG]TTA[TC][AG]-3' (By similarity). Also activates the telokin promoter in smooth muscle-specific and calcium-dependent manner.

Mus musculus (taxid: 10090)

>sp|Q10587|TEF_HUMAN Thyrotroph embryonic factor OS=Homo sapiens GN=TEF PE=1 SV=3

 Score = 78.6 bits (192), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 92/179 (51%), Gaps = 15/179 (8%)

Query: 106 AQAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPAANLT 162
           A +A L P IWDKT+PYD +   L+Y+DLDEFL +NGIP    +          P A L 
Sbjct: 73  AVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPA---SPTHLAHNLLLPVAELE 129

Query: 163 GGHTTTTLQNVTSTISGRL---SPCGSSQASVMTKRERSPSPSEP--MSPLTISPPSPAD 217
           G  + ++      + S  +   S   SS  S + K   +PSP +P  +       P PAD
Sbjct: 130 GKESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCVEVDVNFNPDPAD 189

Query: 218 STLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEME----RLKKENLSLR 272
             LS       F+PR   F++E+LKPQPM+KK++K  +   Q+ E    R KK N++ +
Sbjct: 190 LVLSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAK 248

Transcription factor that binds to and transactivates the TSHB promoter. Binds to a minimal DNA-binding sequence 5'-[TC][AG][AG]TTA[TC][AG]-3'.

Homo sapiens (taxid: 9606)

>sp|P41224|TEF_RAT Thyrotroph embryonic factor OS=Rattus norvegicus GN=Tef PE=1 SV=3

 Score = 78.2 bits (191), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 94/180 (52%), Gaps = 17/180 (9%)

Query: 106 AQAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVD-GNTSQTSTGGAPTPAANL 161
           A +A L P IWDKT+PYD +   L+Y+DLDEFL +NGIP    + +Q        P A L
Sbjct: 71  AVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAQNLL----LPVAEL 126

Query: 162 TGGHTTTTLQNVTSTISGRL---SPCGSSQASVMTKRERSPSPSEP--MSPLTISPPSPA 216
            G  + ++      + S  +   S   SS  S + K   +PSP +P  +       P PA
Sbjct: 127 EGKESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCVEVDVNFNPDPA 186

Query: 217 DSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEME----RLKKENLSLR 272
           D  LS       F+PR   F++E+LKPQPM+KK++K  +   Q+ E    R KK N++ +
Sbjct: 187 DLVLSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAK 246

Transcription factor that binds to and transactivates the TSHB promoter. Binds to a minimal DNA-binding sequence 5'-[TC][AG][AG]TTA[TC][AG]-3'.

Rattus norvegicus (taxid: 10116)

>sp|Q10586|DBP_HUMAN D site-binding protein OS=Homo sapiens GN=DBP PE=1 SV=1

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 82/172 (47%), Gaps = 29/172 (16%)

Query: 109 AFLGPNIWDKTLPYDSDLKYVDLDEFLSDNGIPVDGNTSQTSTGG-------APTPAANL 161
             L P +W++TLP+  D++YVDLD FL ++G+P         +         AP+P    
Sbjct: 98  GLLAPLLWERTLPF-GDVEYVDLDAFLLEHGLPPSPPPPGGPSPEPSPARTPAPSPGPGS 156

Query: 162 TG--------GHTTTTLQNVTSTISGRLSPCGSSQASVMTKRERSPSPSEP--MSPLTIS 211
            G        GH     +    T SG          + +T R+ +PSP +P  +  L   
Sbjct: 157 CGSASPRSSPGHAPA--RAALGTASG--------HRAGLTSRD-TPSPVDPDTVEVLMTF 205

Query: 212 PPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEMER 263
            P PAD  LS       FDPR   FS+EELKPQP++KK+RK  +   Q+ E+
Sbjct: 206 EPDPADLALSSIPGHETFDPRRHRFSEEELKPQPIMKKARKIQVPEEQKDEK 257

This transcriptional activator recognizes and binds to the sequence 5'-RTTAYGTAAY-3' found in the promoter of genes such as albumin, CYP2A4 and CYP2A5. It is not essential for circadian rhythm generation, but modulates important clock output genes. May be a direct target for regulation by the circadian pacemaker component clock. May affect circadian period and sleep regulation.

Homo sapiens (taxid: 9606)

>sp|Q60925|DBP_MOUSE D site-binding protein OS=Mus musculus GN=Dbp PE=2 SV=2

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 13/163 (7%)

Query: 110 FLGPNIWDKTLPYDSDLKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPA-------ANLT 162
              P +W++TLP+  D++YVDLD FL ++G+             AP+PA          +
Sbjct: 99  LFAPLLWERTLPF-GDVEYVDLDAFLLEHGL-PPSPPPPGGLSPAPSPARTPAPSPGPGS 156

Query: 163 GGHTTTTLQNVTSTISGRLSPCGSSQASVMTKRERSPSPSEP--MSPLTISPPSPADSTL 220
              ++       +     L   G  +A  +T R+ +PSP +P  +  L    P PAD  L
Sbjct: 157 CSSSSPRSSPGHAPARATLGAAGGHRAG-LTSRD-TPSPVDPDTVEVLMTFEPDPADLAL 214

Query: 221 SFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEMER 263
           S       FDPR   FS+EELKPQP++KK+RK  +   Q+ E+
Sbjct: 215 SSIPGHETFDPRRHRFSEEELKPQPIMKKARKVQVPEEQKDEK 257

This transcriptional activator recognizes and binds to the sequence 5'-RTTAYGTAAY-3' found in the promoter of genes such as albumin, CYP2A4 and CYP2A5. It is not essential for circadian rhythm generation, but modulates important clock output genes. May be a direct target for regulation by the circadian pacemaker component clock. May affect circadian period and sleep regulation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
380028288	330	PREDICTED: hepatic leukemia factor-like	0.671	0.575	0.504	2e-53
340724900	373	PREDICTED: hepatic leukemia factor-like	0.717	0.544	0.487	2e-52
350422036	334	PREDICTED: hepatic leukemia factor-like	0.671	0.568	0.496	4e-52
307186390	262	Hepatic leukemia factor [Camponotus flor	0.674	0.729	0.484	1e-51
307204559	288	Hepatic leukemia factor [Harpegnathos sa	0.664	0.652	0.479	3e-51
328779425	345	PREDICTED: hepatic leukemia factor [Apis	0.671	0.550	0.471	5e-50
383854666	353	PREDICTED: LOW QUALITY PROTEIN: hepatic	0.671	0.538	0.470	6e-50
332021562	310	Hepatic leukemia factor [Acromyrmex echi	0.625	0.570	0.497	6e-50
170058911	243	par domain protein [Culex quinquefasciat	0.618	0.720	0.485	2e-46
345484586	441	PREDICTED: hepatic leukemia factor-like	0.692	0.444	0.455	3e-46

>gi|380028288|ref|XP_003697838.1| PREDICTED: hepatic leukemia factor-like [Apis florea]

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 126/250 (50%), Positives = 144/250 (57%), Gaps = 60/250 (24%)

Query: 79  VLSTGKTNCKESSDKSKEDSELWSTVEAQAAFLGPNIWDKTLPYDSDLKYVDLDEFLSDN 138
           V   GK       +K   D ELW  VEAQAAFLGPN+WDKTLPYD+DLKYVDLDEFLS+N
Sbjct: 94  VYVNGKQGKDGPEEKKDADGELWGNVEAQAAFLGPNLWDKTLPYDADLKYVDLDEFLSEN 153

Query: 139 GIPVDGNTSQTSTGGAPTPAANLTGGHTTTTLQNVTSTIS-GRLSPCGSSQASVMTKRER 197
           GIPVDG     + GG         G   +  L  + +T + G   P G     V TKRER
Sbjct: 154 GIPVDG----VAGGG--------QGTMQSGQLHKMNNTETPGHQGPAGLHLEPV-TKRER 200

Query: 198 SPSPSEPMSPLTISPPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQ---- 253
           SPSPSE  SP T++PPSPADSTLS  SS RDFDPR+R FSDEELKPQPM+KKSRKQ    
Sbjct: 201 SPSPSECCSPDTMNPPSPADSTLSMASSGRDFDPRTRAFSDEELKPQPMIKKSRKQFVPD 260

Query: 254 ------------------------------------------NMGLRQEMERLKKENLSL 271
                                                     NMGLRQE++RLK EN+ L
Sbjct: 261 DLKDDKYWARRRKNNMAAKRSRDARRMKENQIALRAGFLEKENMGLRQELDRLKNENMLL 320

Query: 272 RDKLSKFTDL 281
           RDKLSK+TD+
Sbjct: 321 RDKLSKYTDV 330

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724900|ref|XP_003400816.1| PREDICTED: hepatic leukemia factor-like [Bombus terrestris]

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/271 (48%), Positives = 152/271 (56%), Gaps = 68/271 (25%)

Query: 63  KTLPYDSDLKVML-SPLVLSTGKTNCKESSDKSKEDSELWSTVEAQAAFLGPNIWDKTLP 121
           +  PYD     M+ S L    GK   +E  D    D ELW  VEAQAAFLGPN+WDKTLP
Sbjct: 119 RAAPYDRTGDPMITSSLKGKQGKDGPEEKKDA---DGELWGNVEAQAAFLGPNLWDKTLP 175

Query: 122 YDSDLK----YVDLDEFLSDNGIPVDGNTSQTSTGGAPTPAANLTGGHTTTTLQNVTSTI 177
           YD+DLK    YVDLDEFLS+NGIPVDG     + GG         G   +  L  + +T 
Sbjct: 176 YDADLKVLNHYVDLDEFLSENGIPVDG----VAGGG--------QGTMQSGQLHKINNTE 223

Query: 178 S-GRLSPCGSSQASVMTKRERSPSPSEPMSPLTISPPSPADSTLSFTSSTRDFDPRSRTF 236
           + G   P G     V TKRERSPSPSE  SP T++PPSPADSTLS  SS RDFDPR+R F
Sbjct: 224 TPGHQGPAGLHLEPV-TKRERSPSPSECCSPDTMNPPSPADSTLSMASSGRDFDPRTRAF 282

Query: 237 SDEELKPQPMVKKSRKQ------------------------------------------- 253
           SDEELKPQPM+KKSRKQ                                           
Sbjct: 283 SDEELKPQPMIKKSRKQFVPDDLKDDKYWARRRKNNMAAKRSRDARRMKENQIALRAGFL 342

Query: 254 ---NMGLRQEMERLKKENLSLRDKLSKFTDL 281
              NMGLRQE++RLK EN+ LRDKLSK+TD+
Sbjct: 343 EKENMGLRQELDRLKNENMLLRDKLSKYTDV 373

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422036|ref|XP_003493035.1| PREDICTED: hepatic leukemia factor-like [Bombus impatiens]

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 126/254 (49%), Positives = 144/254 (56%), Gaps = 64/254 (25%)

Query: 79  VLSTGKTNCKESSDKSKEDSELWSTVEAQAAFLGPNIWDKTLPYDSDLK----YVDLDEF 134
           V   GK       +K   D ELW  VEAQAAFLGPN+WDKTLPYD+DLK    YVDLDEF
Sbjct: 94  VYVNGKQGKDGPEEKKDADGELWGNVEAQAAFLGPNLWDKTLPYDADLKVLNHYVDLDEF 153

Query: 135 LSDNGIPVDGNTSQTSTGGAPTPAANLTGGHTTTTLQNVTSTIS-GRLSPCGSSQASVMT 193
           LS+NGIPVDG     + GG         G   +  L  + +T + G   P G     V T
Sbjct: 154 LSENGIPVDG----VAGGG--------QGTMQSGQLHKINNTETPGHQGPAGLHLEPV-T 200

Query: 194 KRERSPSPSEPMSPLTISPPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQ 253
           KRERSPSPSE  SP T++PPSPADSTLS  SS RDFDPR+R FSDEELKPQPM+KKSRKQ
Sbjct: 201 KRERSPSPSECCSPDTMNPPSPADSTLSMASSGRDFDPRTRAFSDEELKPQPMIKKSRKQ 260

Query: 254 ----------------------------------------------NMGLRQEMERLKKE 267
                                                         NMGLRQE++RLK E
Sbjct: 261 FVPDDLKDDKYWARRRKNNMAAKRSRDARRMKENQIALRAGFLEKENMGLRQELDRLKNE 320

Query: 268 NLSLRDKLSKFTDL 281
           N+ LRDKLSK+TD+
Sbjct: 321 NMLLRDKLSKYTDV 334

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186390|gb|EFN72024.1| Hepatic leukemia factor [Camponotus floridanus]

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 123/254 (48%), Positives = 143/254 (56%), Gaps = 63/254 (24%)

Query: 75  LSPLVLSTGKTNCKESSDKSKEDSELWSTVEAQAAFLGPNIWDKTLPYDSDLKYVDLDEF 134
           + PL+   GK   +E  D    D ELW  VEAQAAFLGP +WDK+LPYD+DLKYVDLDEF
Sbjct: 25  IFPLIGKQGKDGPEEKKDA---DGELWGNVEAQAAFLGPTLWDKSLPYDADLKYVDLDEF 81

Query: 135 LSDNGIPVDGNTSQTSTGGAPTPAANLTGGHTTTTLQNVTST-ISGRLSPCGSSQASVMT 193
           LS+NGIPVDG                       + L  + +T  +G   P G     V T
Sbjct: 82  LSENGIPVDGVAGGGQGA------------MQGSQLHKINNTEAAGHQGPAGLHLEPV-T 128

Query: 194 KRERSPSPSEPMSPLTISPPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQ 253
           KRERSPSPSE  SP T++PPSPADSTLS  SS RDFDPR+R FSDEELKPQPM+KKSRKQ
Sbjct: 129 KRERSPSPSECCSPDTLNPPSPADSTLSMASSGRDFDPRTRAFSDEELKPQPMIKKSRKQ 188

Query: 254 ----------------------------------------------NMGLRQEMERLKKE 267
                                                         NMGLRQE++RLK E
Sbjct: 189 FVPDDLKDDKYWARRRKNNMAAKRSRDARRMKENQIALRAGFLEKENMGLRQELDRLKNE 248

Query: 268 NLSLRDKLSKFTDL 281
           N+ LRDKLSK+TD+
Sbjct: 249 NMLLRDKLSKYTDV 262

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204559|gb|EFN83234.1| Hepatic leukemia factor [Harpegnathos saltator]

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 118/246 (47%), Positives = 135/246 (54%), Gaps = 58/246 (23%)

Query: 82  TGKTNCKESSDKSKEDSELWSTVEAQAAFLGPNIWDKTLPYDSDLKYVDLDEFLSDNGIP 141
            GK       +K   D ELW  VEAQAAFLGPN+WDKTLPYD+DLKYVDLDEFLS+NGIP
Sbjct: 55  AGKQGKDGPEEKKDADGELWGNVEAQAAFLGPNLWDKTLPYDADLKYVDLDEFLSENGIP 114

Query: 142 VDGNTSQTSTGGAPTPAANLTGGHTTTTLQNVTSTISGRLSPCGSSQASVMTKRERSPSP 201
           VDG                       + L  + +T +             +TKRERSPSP
Sbjct: 115 VDGVAGGGQGA------------MQGSQLHKINNTEAAGHQGSAGLHLEPVTKRERSPSP 162

Query: 202 SEPMSPLTISPPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQ-------- 253
           SE  SP  ++PPSPADSTLS  SS RDFDPR+R FSDEELKPQPM+KKSRKQ        
Sbjct: 163 SECCSPDPLNPPSPADSTLSMASSGRDFDPRTRAFSDEELKPQPMIKKSRKQFVPDDLKD 222

Query: 254 --------------------------------------NMGLRQEMERLKKENLSLRDKL 275
                                                 NMGLRQE+ERLK EN+ LRDKL
Sbjct: 223 DKYWARRRKNNMAAKRSRDARRMKENQIALRAGFLEKENMGLRQELERLKNENMLLRDKL 282

Query: 276 SKFTDL 281
           SK+TD+
Sbjct: 283 SKYTDV 288

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779425|ref|XP_391997.3| PREDICTED: hepatic leukemia factor [Apis mellifera]

 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 125/265 (47%), Positives = 143/265 (53%), Gaps = 75/265 (28%)

Query: 79  VLSTGKTNCKESSDKSKEDSELWSTVEAQAAFLGPNIWDKTLPYDSDLKYVDLDEFLSDN 138
           V   GK       +K   D ELW  VEAQAAFLGPN+WDKTLPYD+DLKYVDLDEFLS+N
Sbjct: 94  VYVNGKQGKDGPEEKKDADGELWGNVEAQAAFLGPNLWDKTLPYDADLKYVDLDEFLSEN 153

Query: 139 GIPVDGNTSQTSTGGAPTPAANLTGGHTTTTLQNVTSTIS-GRLSPCGSSQASVMTKRER 197
           GIPVDG     + GG         G   +  L  + +T + G   P G     V TKRER
Sbjct: 154 GIPVDG----VAGGG--------QGTMQSGQLHKMNNTETPGHQGPAGLHLEPV-TKRER 200

Query: 198 SPSPSEPMSPLTISPPSPADS---------------TLSFTSSTRDFDPRSRTFSDEELK 242
           SPSPSE  SP T++PPSPADS                LS  SS RDFDPR+R FSDEELK
Sbjct: 201 SPSPSECCSPDTMNPPSPADSNSEDSSRIQYGLSLVALSMASSGRDFDPRTRAFSDEELK 260

Query: 243 PQPMVKKSRKQ----------------------------------------------NMG 256
           PQPM+KKSRKQ                                              NMG
Sbjct: 261 PQPMIKKSRKQFVPDDLKDDKYWARRRKNNMAAKRSRDARRMKENQIALRAGFLEKENMG 320

Query: 257 LRQEMERLKKENLSLRDKLSKFTDL 281
           LRQE++RLK EN+ LRDKLSK+TD+
Sbjct: 321 LRQELDRLKNENMLLRDKLSKYTDV 345

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854666|ref|XP_003702841.1| PREDICTED: LOW QUALITY PROTEIN: hepatic leukemia factor-like [Megachile rotundata]

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 127/270 (47%), Positives = 144/270 (53%), Gaps = 80/270 (29%)

Query: 79  VLSTGKTNCKESSDKSKEDSELWSTVEAQAAFLGPNIWDKTLPYDSDLKYVDLDEFLSDN 138
           V   GK       +K   D ELW  VEAQAAFLGPN+WDKTLPYD+DLKYVDLDEFLS+N
Sbjct: 97  VYVNGKQGKDGPEEKKDADGELWGNVEAQAAFLGPNLWDKTLPYDADLKYVDLDEFLSEN 156

Query: 139 GIPVDGNTSQTSTGGAPT-PAANLTGGHTTTTLQNVTSTISGRLSPCGSSQASVMTKRER 197
           GIPVDG     + GG  T P+  L   + T T         G   P G     V TKRER
Sbjct: 157 GIPVDG----VAGGGQGTMPSGQLHKMNNTET--------PGHQGPAGLHLEPV-TKRER 203

Query: 198 SPSPSEPMSPLTISPPSPADST--------------------LSFTSSTRDFDPRSRTFS 237
           SPSPSE  SP T++PPSPADS+                    LS  SS RDFDPR+R FS
Sbjct: 204 SPSPSECCSPDTMNPPSPADSSKYDNQRSIFQELXHDFYVAALSMASSGRDFDPRTRAFS 263

Query: 238 DEELKPQPMVKKSRKQ-------------------------------------------- 253
           DEELKPQPM+KKSRKQ                                            
Sbjct: 264 DEELKPQPMIKKSRKQFVPDDLKDDKYWARRRKNNMAAKRSRDARRMKENQIALRAGFLE 323

Query: 254 --NMGLRQEMERLKKENLSLRDKLSKFTDL 281
             NMGLRQE++RLK EN+ LRDKLSK+TD+
Sbjct: 324 KENMGLRQELDRLKNENMLLRDKLSKYTDV 353

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021562|gb|EGI61927.1| Hepatic leukemia factor [Acromyrmex echinatior]

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 120/241 (49%), Positives = 137/241 (56%), Gaps = 64/241 (26%)

Query: 92  DKSKEDSELWSTVEAQAAFLGPNIWDKTLPYDSDLK----YVDLDEFLSDNGIPVDGNTS 147
           +K   D ELW  VEAQAAFLGPN+WDKTLPYD+DLK    YVDLDEFLS+NGIPVDG   
Sbjct: 83  EKKDADGELWGNVEAQAAFLGPNLWDKTLPYDADLKVLNHYVDLDEFLSENGIPVDGVAG 142

Query: 148 QTSTGGAPTPAANLTGGHTTTTLQNVTST-ISGRLSPCGSSQASVMTKRERSPSPSEPMS 206
                               + L  + +T  +G   P G     V TKRERSPSPSE  S
Sbjct: 143 GGQGA------------MQGSQLHKINNTEAAGHQGPAGLHLEPV-TKRERSPSPSECCS 189

Query: 207 PLTISPPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQ------------- 253
           P T++PPSPADSTLS  SS RDFDPR+R FSDEELKPQPM+KKSRKQ             
Sbjct: 190 PDTLNPPSPADSTLSMASSGRDFDPRTRAFSDEELKPQPMIKKSRKQFVPDDLKDDKYWA 249

Query: 254 ---------------------------------NMGLRQEMERLKKENLSLRDKLSKFTD 280
                                            NMGLRQE++RLK EN+ LRDKLSK+TD
Sbjct: 250 RRRKNNMAAKRSRDARRMKENQIALRAGFLEKENMGLRQELDRLKNENMLLRDKLSKYTD 309

Query: 281 L 281
           +
Sbjct: 310 V 310

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170058911|ref|XP_001865130.1| par domain protein [Culex quinquefasciatus] gi|167877825|gb|EDS41208.1| par domain protein [Culex quinquefasciatus]

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/239 (48%), Positives = 142/239 (59%), Gaps = 64/239 (26%)

Query: 92  DKSKEDSELWSTVEAQAAFLGPNIWDKTLPYDSDLK---YVDLDEFLSDNGIPVDGNTSQ 148
           DK KED + W+ VEAQAAFLGPN+WDKTLPYDSDLK   Y DLDEFLS+NGIPVDG    
Sbjct: 20  DKHKEDGDPWN-VEAQAAFLGPNLWDKTLPYDSDLKVHQYADLDEFLSENGIPVDG---- 74

Query: 149 TSTGGAPTPAANLTGGHTTTTLQNVTSTISGRLSPCGSSQASVMTKRERSPSPSEPMSPL 208
                   P+++L    +     +     +G LS  G SQ  V TKRERSPSPS+ MSP 
Sbjct: 75  -------LPSSHLAHSTSLNGRSDSLGHCAG-LSLSGLSQ--VTTKRERSPSPSDCMSPD 124

Query: 209 TISPPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQ--------------- 253
           TI+PPSPADST S +S+TRDFDPR+R FSDEELKPQPM+KKSRKQ               
Sbjct: 125 TINPPSPADSTFSMSSTTRDFDPRTRAFSDEELKPQPMIKKSRKQFVPDDMKDDKYWARR 184

Query: 254 -------------------------------NMGLRQEMERLKKENLSLRDKLSKFTDL 281
                                          N+ L +E+E+LK+EN+ LR +LSK+ ++
Sbjct: 185 RKNNMAAKRSRDARRMKENQIALRANYLEKENLNLHREVEQLKQENMELRARLSKYQEV 243

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345484586|ref|XP_001602868.2| PREDICTED: hepatic leukemia factor-like [Nasonia vitripennis]

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/270 (45%), Positives = 139/270 (51%), Gaps = 74/270 (27%)

Query: 83  GKTNCKESSDKSKEDSELWSTVEAQAAFLGPNIWDKTLPYDSDLKYVDLDEFLSDNGIPV 142
           GK       +K   D ELW  VEAQAAFLGPN+WDKTLPYD+DLKYVDLDEFLS+NGIPV
Sbjct: 175 GKQGKDGPDEKKDADGELWGNVEAQAAFLGPNLWDKTLPYDADLKYVDLDEFLSENGIPV 234

Query: 143 DGNTS----------QTSTGGAPTPAANLTGGHTTTTLQNVTSTISGRLSPCGSSQASVM 192
           DG             Q S       A             +V +T  G   P G     V 
Sbjct: 235 DGVAGGGGGGGAGAMQASQLHKLGGANANNNAAGPGGNGDVQAT--GHQGPAGLHLEPV- 291

Query: 193 TKRERSPSPSEPMSPLTISPPSPADS---------------TLSFTSSTRDFDPRSRTFS 237
           TKRERSPSPS+  SP T++PPSPADS                LS  SS RDFDPR+R FS
Sbjct: 292 TKRERSPSPSDCCSPDTLNPPSPADSNSGDSSRIQYGLSLVALSMASSGRDFDPRTRAFS 351

Query: 238 DEELKPQPMVKKSRKQ-------------------------------------------- 253
           DEELKPQPM+KKSRKQ                                            
Sbjct: 352 DEELKPQPMIKKSRKQFVPDDLKDDKYWARRRKNNMAAKRSRDARRMKENQIALRAGFLE 411

Query: 254 --NMGLRQEMERLKKENLSLRDKLSKFTDL 281
             NMGLRQE++RLK EN+ LRDKLSK+TD+
Sbjct: 412 KENMGLRQELDRLKNENMLLRDKLSKYTDV 441

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
FB|FBgn0016694	647	Pdp1 "PAR-domain protein 1" [D	0.484	0.211	0.503	1.4e-36
UNIPROTKB|F1NBU3	295	HLF "Uncharacterized protein"	0.522	0.501	0.396	5.6e-25
MGI|MGI:96108	295	Hlf "hepatic leukemia factor"	0.501	0.481	0.381	4.9e-24
UNIPROTKB|Q16534	295	HLF "Hepatic leukemia factor"	0.501	0.481	0.381	7.9e-24
RGD|1561379	295	Hlf "hepatic leukemia factor"	0.498	0.477	0.391	7.9e-24
UNIPROTKB|Q64709	295	Hlf "Hepatic leukemia factor"	0.498	0.477	0.391	7.9e-24
UNIPROTKB|J9P0W7	295	HLF "Uncharacterized protein"	0.501	0.481	0.375	1e-23
UNIPROTKB|E1BFR1	295	HLF "Uncharacterized protein"	0.501	0.481	0.375	2.1e-23
ZFIN|ZDB-GENE-061013-159	294	hlfa "hepatic leukemia factor	0.533	0.513	0.366	5.4e-23
UNIPROTKB|I3L4R4	236	HLF "Hepatic leukemia factor"	0.572	0.686	0.356	2.7e-20

FB|FBgn0016694 Pdp1 "PAR-domain protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 336 (123.3 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
 Identities = 79/157 (50%), Positives = 98/157 (62%)

Query:   100 LWSTVEAQAAFLGPNIWDKTLPYDSDLK---YVDLDEFLSDNGIPVDGNTSQTSTGGAPT 156
             +W+ VEAQ AFLGPN+WDKTLPYD+DLK   Y DLDEFLS+N IP DG            
Sbjct:   434 IWN-VEAQTAFLGPNLWDKTLPYDADLKVTQYADLDEFLSENNIP-DG-----------L 480

Query:   157 PAANLTGGHTTTTLQNVTSTISGRLSPCGSSQASVMTKXXXXXXXXXXXXXLTISPPSPA 216
             P  +L  GH++  L + + ++ G  +        + TK              T++PPSPA
Sbjct:   481 PGTHL--GHSSG-LGHRSDSL-GHAAGLSLGLGHITTKRERSPSPSDCISPDTLNPPSPA 536

Query:   217 DSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQ 253
             +ST SF SS RDFDPR+R FSDEELKPQPM+KKSRKQ
Sbjct:   537 ESTFSFASSGRDFDPRTRAFSDEELKPQPMIKKSRKQ 573

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0003677 "DNA binding" evidence=IPI

GO:0006351 "transcription, DNA-dependent" evidence=TAS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IGI;IMP;IDA;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0040007 "growth" evidence=IMP

GO:0007584 "response to nutrient" evidence=IMP

GO:0042023 "DNA endoreduplication" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

UNIPROTKB|F1NBU3 HLF "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 248 (92.4 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
 Identities = 65/164 (39%), Positives = 86/164 (52%)

Query:   102 STVEAQAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVDGNTS---------QT 149
             ST   Q+AFLGP +WDKTLPYD D   L+Y+DL+EFLS+NGIP   N           Q 
Sbjct:    56 STTVPQSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIPPSPNQHEHSPHQPGLQQ 115

Query:   150 STGGAPTPAANLTGGHTTTTLQNVTSTISGRLSPCGSSQASVMTKXXXXXXXXXXXXXLT 209
             +T  +P+   +L+   +T+    + S  +   SP    Q  + T              + 
Sbjct:   116 ATSASPS-VMDLSSRASTSVHPGMVSQ-NCMQSPVRPGQI-LPTNRNTPSPIDPETIQVP 172

Query:   210 IS-PPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRK 252
             +   P PAD  LS       FDPR R FS+EELKPQPM+KK+RK
Sbjct:   173 VGYEPDPADLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARK 216

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

MGI|MGI:96108 Hlf "hepatic leukemia factor" [Mus musculus (taxid:10090)]

 Score = 240 (89.5 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
 Identities = 61/160 (38%), Positives = 82/160 (51%)

Query:   107 QAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPAANLTG 163
             Q+AFLGP +WDKTLPYD D   L+Y+DL+EFLS+NGIP     S +    +P P      
Sbjct:    61 QSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIP----PSPSQHDHSPHPPGLQPA 116

Query:   164 GHTTTTLQNVTSTISGRLSP------CGSS--QASVMTKXXXXXXXXXXXXXLTIS---P 212
               T  ++ +++S  +  L P      C  S  +   +               + +     
Sbjct:   117 SSTAPSVMDLSSRATAPLHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYE 176

Query:   213 PSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRK 252
             P PAD  LS       FDPR R FS+EELKPQPM+KK+RK
Sbjct:   177 PDPADLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARK 216

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0035914 "skeletal muscle cell differentiation" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0048511 "rhythmic process" evidence=IEA

UNIPROTKB|Q16534 HLF "Hepatic leukemia factor" [Homo sapiens (taxid:9606)]

 Score = 238 (88.8 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
 Identities = 61/160 (38%), Positives = 81/160 (50%)

Query:   107 QAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPAANLTG 163
             Q+AFLGP +WDKTLPYD D   L+Y+DL+EFLS+NGIP     S +    +P P      
Sbjct:    61 QSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIP----PSPSQHDHSPHPPGLQPA 116

Query:   164 GHTTTTLQNVTSTISGRLSP------CGSS--QASVMTKXXXXXXXXXXXXXLTIS---P 212
                  ++ +++S  S  L P      C  S  +   +               + +     
Sbjct:   117 SSAAPSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYE 176

Query:   213 PSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRK 252
             P PAD  LS       FDPR R FS+EELKPQPM+KK+RK
Sbjct:   177 PDPADLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARK 216

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0048511 "rhythmic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=TAS

GO:0003677 "DNA binding" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0007275 "multicellular organismal development" evidence=TAS

RGD|1561379 Hlf "hepatic leukemia factor" [Rattus norvegicus (taxid:10116)]

 Score = 238 (88.8 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
 Identities = 63/161 (39%), Positives = 81/161 (50%)

Query:   107 QAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPAANLTG 163
             Q+AFLGP +WDKTLPYD D   L+Y+DL+EFLS+NGIP     S +    +P P      
Sbjct:    61 QSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIP----PSPSQHDHSPHPPGLQPA 116

Query:   164 GHTTTTLQNVTSTISGRLSPCGSSQASVMTKXXXXXXXXXXXXXLT--ISP--------- 212
               T  ++ +++S  +  L P G    + M                   I P         
Sbjct:   117 SSTAPSVMDLSSRATAPLHP-GIPSPNCMQNPIRPGQLLPANRNTPSPIDPDTIQVPVGY 175

Query:   213 -PSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRK 252
              P PAD  LS       FDPR R FS+EELKPQPM+KK+RK
Sbjct:   176 EPDPADLALSSIPGPEMFDPRKRKFSEEELKPQPMIKKARK 216

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0048511 "rhythmic process" evidence=IEA

UNIPROTKB|Q64709 Hlf "Hepatic leukemia factor" [Rattus norvegicus (taxid:10116)]

 Score = 238 (88.8 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
 Identities = 63/161 (39%), Positives = 81/161 (50%)

Query:   107 QAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPAANLTG 163
             Q+AFLGP +WDKTLPYD D   L+Y+DL+EFLS+NGIP     S +    +P P      
Sbjct:    61 QSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIP----PSPSQHDHSPHPPGLQPA 116

Query:   164 GHTTTTLQNVTSTISGRLSPCGSSQASVMTKXXXXXXXXXXXXXLT--ISP--------- 212
               T  ++ +++S  +  L P G    + M                   I P         
Sbjct:   117 SSTAPSVMDLSSRATAPLHP-GIPSPNCMQNPIRPGQLLPANRNTPSPIDPDTIQVPVGY 175

Query:   213 -PSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRK 252
              P PAD  LS       FDPR R FS+EELKPQPM+KK+RK
Sbjct:   176 EPDPADLALSSIPGPEMFDPRKRKFSEEELKPQPMIKKARK 216

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|J9P0W7 HLF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 237 (88.5 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
 Identities = 60/160 (37%), Positives = 82/160 (51%)

Query:   107 QAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPAANLTG 163
             Q+AFLGP +WDKTLPYD D   L+Y+DL+EFLS+NGIP     S +    +P P      
Sbjct:    61 QSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIP----PSPSQHDHSPHPPGLQPA 116

Query:   164 GHTTTTLQNVTSTISGRLSP------CGSS--QASVMTKXXXXXXXXXXXXXLTIS---P 212
               +  ++ +++S  S  + P      C  S  +   +               + +     
Sbjct:   117 SSSAPSVMDLSSRASAPIHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYE 176

Query:   213 PSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRK 252
             P PAD  LS       FDPR R FS+EELKPQPM+KK+RK
Sbjct:   177 PDPADLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARK 216

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|E1BFR1 HLF "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 234 (87.4 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
 Identities = 60/160 (37%), Positives = 81/160 (50%)

Query:   107 QAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPAANLTG 163
             Q+AFLGP +WDKTLPYD D   L+Y+DL+EFLS+NGIP     S +    +P P      
Sbjct:    61 QSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIP----PSPSQHDHSPHPPGLQPT 116

Query:   164 GHTTTTLQNVTSTISGRLSP------CGSS--QASVMTKXXXXXXXXXXXXXLTIS---P 212
                  ++ +++S  S  + P      C  S  +   +               + +     
Sbjct:   117 SSAAPSVMDLSSRASAPIHPGIPPPNCVQSPMRPGQLLPANRNTPSPIDPDTIQVPVGYE 176

Query:   213 PSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRK 252
             P PAD  LS       FDPR R FS+EELKPQPM+KK+RK
Sbjct:   177 PDPADLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARK 216

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

ZFIN|ZDB-GENE-061013-159 hlfa "hepatic leukemia factor a" [Danio rerio (taxid:7955)]

 Score = 236 (88.1 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
 Identities = 59/161 (36%), Positives = 88/161 (54%)

Query:   102 STVEA-QAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVDGNTSQTSTGGAPT- 156
             ST+   Q+AFLGP +WDKTLPY++D   L+Y+DL+EFL +N IP +  + Q+     P  
Sbjct:    55 STLNTPQSAFLGPTLWDKTLPYNADNFQLEYMDLEEFLLENNIPANPQSEQSQPSQPPLQ 114

Query:   157 -PAANLTGGHTTTTLQNVTSTISGRLSP-C--GSSQASVMTKXXXXXXXXXXXXXLTIS- 211
              P+A  T      + ++ +S+ +G ++  C    ++  +                + ++ 
Sbjct:   115 PPSAPPTPSVVDLSNRDNSSSHNGMVAQNCLQNPTRPGLPASRDTPSPIDPDSIQVPLAY 174

Query:   212 PPSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRK 252
              P PAD  LS       FDPR R FS EELKPQPM+KK+RK
Sbjct:   175 EPDPADLALSSVPGQEIFDPRKRKFSAEELKPQPMIKKARK 215

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|I3L4R4 HLF "Hepatic leukemia factor" [Homo sapiens (taxid:9606)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 66/185 (35%), Positives = 94/185 (50%)

Query:   107 QAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPAANLTG 163
             Q+AFLGP +WDKTLPYD D   L+Y+DL+EFLS+NGIP     S +    +P P      
Sbjct:     1 QSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIP----PSPSQHDHSPHPPGLQPA 56

Query:   164 GHTTTTLQNVTSTISGRLSP------CGSS--QASVMTKXXXXXXXXXXXXXLTIS---P 212
                  ++ +++S  S  L P      C  S  +   +               + +     
Sbjct:    57 SSAAPSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYE 116

Query:   213 PSPADSTLSFTSSTRDFDPRSRTFSDEELKPQPMVKKSRKQNM--GLRQEME---RLKKE 267
             P PAD  LS       FDPR R FS+EELKPQPM+KK+RK  +   L+Q+ +   R +K 
Sbjct:   117 PDPADLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARKVFIPDDLKQDDKYWARRRKN 176

Query:   268 NLSLR 272
             N++ +
Sbjct:   177 NMAAK 181

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BW74	HLF_MOUSE	No assigned EC number	0.3774	0.6431	0.6169	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	283
pfam08172	245	pfam08172, CASP_C, CASP C terminal	5e-05

>gnl|CDD|219737 pfam08172, CASP_C, CASP C terminal

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 10/108 (9%)

Query: 170 LQNVTSTISGRLSPCGSSQASVMTKRERSPSPSEPMSPLT--ISPPSPADSTLSFTSSTR 227
           L  V   IS R     +S  S  T+R  +   S  +SP +  I  P  + S L   +S R
Sbjct: 29  LATVQDEISNRRFNDNASMISGGTRRIPNRGGSGKLSPTSSIIGGPGGSSSILPIITSQR 88

Query: 228 D-FDPRSRTFSDEELKPQPMVKKSRKQNMGLRQEMERLKKENLSLRDK 274
           D F  R+    +EEL+ Q     S      LR+E+E LK +N+ L +K
Sbjct: 89  DRFRKRNTEL-EEELRKQNQTISS------LRRELESLKADNIKLYEK 129

This domain is the C-terminal region of the CASP family of proteins. It is a Golgi membrane protein which is thought to have a role in vesicle transport. Length = 245

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
KOG3119|consensus	269		99.71
PF09006	46	Surfac_D-trimer: Lung surfactant protein D coiled-	91.65
PF14775	60	NYD-SP28_assoc: Sperm tail C-terminal domain	84.41
smart00338	65	BRLZ basic region leucin zipper.	82.57
PF07407	420	Seadorna_VP6: Seadornavirus VP6 protein; InterPro:	80.26

>KOG3119|consensus

Probab=99.71  E-value=1.3e-16  Score=146.83  Aligned_cols=181  Identities=27%  Similarity=0.262  Sum_probs=119.4

Q ss_pred             cccccccccccCCccCCCcccCCCC---CcccchhhHHhhCCCCCCCCCCCCCCCCCCCCCCcCCCCCCccCcccccccc
Q psy17484        101 WSTVEAQAAFLGPNIWDKTLPYDSD---LKYVDLDEFLSDNGIPVDGNTSQTSTGGAPTPAANLTGGHTTTTLQNVTSTI  177 (283)
Q Consensus       101 ~~~~~~~SAfLgP~LWDKTlPyDGd---LeYMDLdEFL~ENGIp~s~~~s~~~~~~~p~~~a~~~~~~~~~s~~~~~~~~  177 (283)
                      ......+.++.+|.+|+.+++|+.+   ..|+|+++||++++|+.+..........++.+..............+.....
T Consensus        14 ~~a~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~~~~~sa~~~~~~~p~~~~   93 (269)
T KOG3119|consen   14 LSAQLGQRARPLPPVFGPERELDLDAGLEALQDLDVGLSNVDLPDAEHQPSNILLDQPGLSLEERHSALPSSLFNPSLKS   93 (269)
T ss_pred             ccccccccccCCCCCCcccccccccccchhcccccccccccCCcccccccccccccCCCcccccccccccccccCccccc
Confidence            3356789999999999999999987   4799999999999999742111111111111000000000000000000000


Q ss_pred             cCC-CCC---C--CC----CCc---cccccCCCCCCC--CCCCCCCcCCCCCCCCccccCCCCCCCCCCCCCCCCccccC
Q psy17484        178 SGR-LSP---C--GS----SQA---SVMTKRERSPSP--SEPMSPLTISPPSPADSTLSFTSSTRDFDPRSRTFSDEELK  242 (283)
Q Consensus       178 s~~-~~~---~--~~----~~~---~~~~~~~~tPSP--~~~i~pd~i~~PDPaDLaLSSvPG~E~FDPRkhkFSEEELK  242 (283)
                      ... .+.   .  ..    ...   ..-...+.+++|  .+++.+...+.++++++..|..++++.|+|++++|+...+|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~s~~~~~  173 (269)
T KOG3119|consen   94 SPFGPSELAEVTRTSESRPGPRAPRSTDLASRATPSPVPPDTLQPLVGYEPDPSDLAASSSPSPSSPDPSKPKSSGAKLK  173 (269)
T ss_pred             ccCCccccccccCcccccccccccccccccccCCCCCCChhhccccccCCCCccccccccCCCCCCCCCCCCCCcccccC
Confidence            000 000   0  00    000   000112234444  46666776667999999999999999999999999999999


Q ss_pred             Ccchhhhhhhh----------------------------------------------hhHHHHHHHHHHHHHHHHHHHHh
Q psy17484        243 PQPMVKKSRKQ----------------------------------------------NMGLRQEMERLKKENLSLRDKLS  276 (283)
Q Consensus       243 PQPMIKKARKv----------------------------------------------NaaLRqEVa~LRKElgr~rniLs  276 (283)
                      +|.++||++|+                                              |.+||++|.+|++||..||+++.
T Consensus       174 ~~~~~~K~~~~~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~  253 (269)
T KOG3119|consen  174 PQSTARKKSKLSSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFL  253 (269)
T ss_pred             CccchhhhccCCCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998877                                              99999999999999999999999


Q ss_pred             hhhcc
Q psy17484        277 KFTDL  281 (283)
Q Consensus       277 KYE~~  281 (283)
                      .|.+.
T Consensus       254 ~~~~~  258 (269)
T KOG3119|consen  254 QLPKP  258 (269)
T ss_pred             hhccc
Confidence            98764

>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46

Probab=91.65  E-value=0.22  Score=36.26  Aligned_cols=28  Identities=25%  Similarity=0.362  Sum_probs=25.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy17484        255 MGLRQEMERLKKENLSLRDKLSKFTDLL  282 (283)
Q Consensus       255 aaLRqEVa~LRKElgr~rniLsKYE~~~  282 (283)
                      +||||-|..|..++.++.+.+|+|..+.
T Consensus         2 ~aLrqQv~aL~~qv~~Lq~~fs~yKKa~   29 (46)
T PF09006_consen    2 NALRQQVEALQGQVQRLQAAFSQYKKAE   29 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999998763

It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....

>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain

Probab=84.41  E-value=1.9  Score=32.35  Aligned_cols=25  Identities=36%  Similarity=0.500  Sum_probs=24.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhh
Q psy17484        254 NMGLRQEMERLKKENLSLRDKLSKF  278 (283)
Q Consensus       254 NaaLRqEVa~LRKElgr~rniLsKY  278 (283)
                      .++|-+|+..||+++..+|++|..|
T Consensus        35 R~~l~~e~~~L~~qN~eLr~lLkqY   59 (60)
T PF14775_consen   35 RAALIQEKESLEQQNEELRSLLKQY   59 (60)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            8899999999999999999999988

>smart00338 BRLZ basic region leucin zipper

Probab=82.57  E-value=2.1  Score=31.42  Aligned_cols=23  Identities=39%  Similarity=0.628  Sum_probs=21.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHh
Q psy17484        254 NMGLRQEMERLKKENLSLRDKLS  276 (283)
Q Consensus       254 NaaLRqEVa~LRKElgr~rniLs  276 (283)
                      |..|+.+|..|++|+..+++++.
T Consensus        42 n~~L~~~~~~l~~e~~~lk~~~~   64 (65)
T smart00338       42 NERLKKEIERLRRELEKLKSELE   64 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999875

>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus

Probab=80.26  E-value=1.7  Score=43.28  Aligned_cols=27  Identities=37%  Similarity=0.537  Sum_probs=21.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy17484        254 NMGLRQEMERLKKENLSLRDKLSKFTD  280 (283)
Q Consensus       254 NaaLRqEVa~LRKElgr~rniLsKYE~  280 (283)
                      |+|||||=+.||||+..+|..|.+-|+
T Consensus        34 ~~aLr~EN~~LKkEN~~Lk~eVerLE~   60 (420)
T PF07407_consen   34 NFALRMENHSLKKENNDLKIEVERLEN   60 (420)
T ss_pred             hhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            778888888888888888887777665

Members of this family are typically of around 420 residues in length. The function of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	283
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	94.29
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	94.24
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	92.35
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	91.37
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	88.43
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	88.16
3r4h_A	34	Coiled coil helix CC-TET-PHI22; coiled coil domain	85.54
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	82.46
2w6b_A	56	RHO guanine nucleotide exchange factor 7; X-RAY cr	81.73
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	80.19
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	80.18

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=94.29  E-value=0.031  Score=42.94  Aligned_cols=24  Identities=29%  Similarity=0.486  Sum_probs=22.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhh
Q psy17484        254 NMGLRQEMERLKKENLSLRDKLSK  277 (283)
Q Consensus       254 NaaLRqEVa~LRKElgr~rniLsK  277 (283)
                      |..||.||..|++|+..||++|..
T Consensus        52 N~~L~~~v~~L~~E~~~Lr~ll~q   75 (78)
T 1gu4_A           52 NERLQKKVEQLSRELSTLRNLFKQ   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999864

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=94.24  E-value=0.043  Score=42.96  Aligned_cols=25  Identities=28%  Similarity=0.493  Sum_probs=23.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhh
Q psy17484        254 NMGLRQEMERLKKENLSLRDKLSKF  278 (283)
Q Consensus       254 NaaLRqEVa~LRKElgr~rniLsKY  278 (283)
                      |+.||.+|+.|++|+..||++|...
T Consensus        52 N~~Lr~~v~~L~~E~~~Lr~ll~~~   76 (87)
T 1hjb_A           52 NERLQKKVEQLSRELSTLRNLFKQL   76 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999998754

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=92.35  E-value=0.1  Score=34.07  Aligned_cols=21  Identities=38%  Similarity=0.509  Sum_probs=17.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH
Q psy17484        255 MGLRQEMERLKKENLSLRDKL  275 (283)
Q Consensus       255 aaLRqEVa~LRKElgr~rniL  275 (283)
                      +||+||+|.|+||+..+|=-+
T Consensus         5 aalkqeiaalkkeiaalkfei   25 (33)
T 4dzn_A            5 AALKQEIAALKKEIAALKFEI   25 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999998877544

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=91.37  E-value=0.17  Score=36.15  Aligned_cols=29  Identities=24%  Similarity=0.460  Sum_probs=24.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy17484        251 RKQNMGLRQEMERLKKENLSLRDKLSKFT  279 (283)
Q Consensus       251 RKvNaaLRqEVa~LRKElgr~rniLsKYE  279 (283)
                      |.-|+-||++|.+|++++..+++.|.+||
T Consensus        25 k~E~~eLk~k~~~L~~~~~el~~~l~~~e   53 (53)
T 2yy0_A           25 RLELAEMKEKYEAIVEENKKLKAKLAQYE   53 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            34488888888888888999999999986

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=88.43  E-value=0.52  Score=34.32  Aligned_cols=23  Identities=30%  Similarity=0.426  Sum_probs=21.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHh
Q psy17484        254 NMGLRQEMERLKKENLSLRDKLS  276 (283)
Q Consensus       254 NaaLRqEVa~LRKElgr~rniLs  276 (283)
                      |..|+.+|..|++|+..+|++|-
T Consensus        39 N~~L~~~i~~L~~E~~~Lk~ll~   61 (63)
T 1ci6_A           39 NEALKERADSLAKEIQYLKDLIE   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999875

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=88.16  E-value=0.43  Score=34.18  Aligned_cols=22  Identities=32%  Similarity=0.385  Sum_probs=21.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Q psy17484        254 NMGLRQEMERLKKENLSLRDKL  275 (283)
Q Consensus       254 NaaLRqEVa~LRKElgr~rniL  275 (283)
                      |..|+.||..|+.|+..++.+|
T Consensus        38 n~~L~~~i~~L~~e~~~Lk~~l   59 (61)
T 1t2k_D           38 NGQLQSEVTLLRNEVAQLKQLL   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999986

>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}

Probab=85.54  E-value=0.87  Score=29.88  Aligned_cols=22  Identities=27%  Similarity=0.468  Sum_probs=18.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHh
Q psy17484        255 MGLRQEMERLKKENLSLRDKLS  276 (283)
Q Consensus       255 aaLRqEVa~LRKElgr~rniLs  276 (283)
                      +|++||++.++|||..+|=-|+
T Consensus         5 aaikqelaaikkelaaikfela   26 (34)
T 3r4h_A            5 AAIKQELAAIKKELAAIKFELA   26 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            6889999999999988775544

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=82.46  E-value=1.2  Score=32.14  Aligned_cols=24  Identities=29%  Similarity=0.295  Sum_probs=22.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhh
Q psy17484        254 NMGLRQEMERLKKENLSLRDKLSK  277 (283)
Q Consensus       254 NaaLRqEVa~LRKElgr~rniLsK  277 (283)
                      |..|+.||..|+.|+..++.+|..
T Consensus        39 n~~L~~ei~~L~~e~~~Lk~~l~~   62 (63)
T 2wt7_A           39 KSALQTEIANLLKEKEKLEFILAA   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999998853

>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}

Probab=81.73  E-value=1.3  Score=32.41  Aligned_cols=23  Identities=22%  Similarity=0.572  Sum_probs=20.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhh
Q psy17484        255 MGLRQEMERLKKENLSLRDKLSK  277 (283)
Q Consensus       255 aaLRqEVa~LRKElgr~rniLsK  277 (283)
                      -|||.||.+||+|+.+++..|..
T Consensus        13 YaLkDqV~eL~qe~k~m~k~lEe   35 (56)
T 2w6b_A           13 YALKDEVQELRQDNKKMKKSLEE   35 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999887754

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=80.19  E-value=0.87  Score=32.70  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=17.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHh
Q psy17484        254 NMGLRQEMERLKKENLSLRDKLS  276 (283)
Q Consensus       254 NaaLRqEVa~LRKElgr~rniLs  276 (283)
                      |..|+.||..|+.|+..+|.+|-
T Consensus        38 n~~L~~~v~~L~~e~~~Lk~~l~   60 (62)
T 1jnm_A           38 NSELASTANMLREQVAQLKQKVM   60 (62)
T ss_dssp             HHHHHHHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888763

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=80.18  E-value=1.5  Score=29.53  Aligned_cols=19  Identities=37%  Similarity=0.424  Sum_probs=17.1

Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q psy17484        254 NMGLRQEMERLKKENLSLR  272 (283)
Q Consensus       254 NaaLRqEVa~LRKElgr~r  272 (283)
                      |..|-+||+.||+.|+.|.
T Consensus        17 ~~~Le~EV~RL~~ll~~~e   35 (36)
T 1kd8_A           17 VWHLENEVARLEKENAECE   35 (36)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccc
Confidence            8899999999999999884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00