Psyllid ID: psy1758
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1527 | 2.2.26 [Sep-21-2011] | |||||||
| A6T0Y8 | 937 | Translation initiation fa | no | N/A | 0.352 | 0.574 | 0.695 | 0.0 | |
| A4G7S7 | 941 | Translation initiation fa | no | N/A | 0.352 | 0.571 | 0.697 | 0.0 | |
| Q2KXY7 | 1034 | Translation initiation fa | no | N/A | 0.358 | 0.529 | 0.645 | 0.0 | |
| A9ITX6 | 991 | Translation initiation fa | no | N/A | 0.358 | 0.552 | 0.652 | 0.0 | |
| Q7WHG2 | 997 | Translation initiation fa | no | N/A | 0.358 | 0.549 | 0.64 | 0.0 | |
| B3R1E4 | 963 | Translation initiation fa | no | N/A | 0.341 | 0.541 | 0.651 | 0.0 | |
| Q7W9A5 | 969 | Translation initiation fa | no | N/A | 0.358 | 0.565 | 0.64 | 0.0 | |
| Q7VYR2 | 997 | Translation initiation fa | no | N/A | 0.358 | 0.549 | 0.638 | 0.0 | |
| Q0K9B9 | 962 | Translation initiation fa | no | N/A | 0.341 | 0.541 | 0.647 | 0.0 | |
| Q1LLR6 | 979 | Translation initiation fa | no | N/A | 0.342 | 0.534 | 0.649 | 0.0 |
| >sp|A6T0Y8|IF2_JANMA Translation initiation factor IF-2 OS=Janthinobacterium sp. (strain Marseille) GN=infB PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/539 (69%), Positives = 465/539 (86%), Gaps = 1/539 (0%)
Query: 1 MSVKSSVVIKNLMKLGQMVTINQVLDQETAMILVEEMGHVAHASKLNDPESFLLNEYNKN 60
MSVK+S VIK+LMKLGQM TINQVLDQETAMILVEEMGH AHA+KL+DPE+ LL + ++
Sbjct: 372 MSVKASEVIKHLMKLGQMCTINQVLDQETAMILVEEMGHTAHAAKLDDPEA-LLEQGEEH 430
Query: 61 ITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF 120
E+L RAP+VT+MGHVDHGKTSLLDYIR+ V EAGGITQHIGAY+V T G ITF
Sbjct: 431 ADIEALPRAPVVTVMGHVDHGKTSLLDYIRRAKVASGEAGGITQHIGAYHVETPRGMITF 490
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK 180
LDTPGHEAFTAMRARGAK TDIV+LVVAADDGVMPQT+EAIAHAK +GVPL+VAINKIDK
Sbjct: 491 LDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTKEAIAHAKAAGVPLVVAINKIDK 550
Query: 181 LDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVT 240
N+DR+KQ+LI+EQV+PEEYGG SPF+ +SAKTG GI+ LLE + LQAE+LELKAPV
Sbjct: 551 PGANMDRVKQELIAEQVVPEEYGGDSPFVPVSAKTGEGIDALLEQVLLQAEVLELKAPVD 610
Query: 241 TPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGP 300
PA+G+++E++LDKG+GPVAT+L+QSGTL+ D+V+AG++YGR+R+ML+ENGK+I EAGP
Sbjct: 611 APARGLVVEAKLDKGRGPVATILVQSGTLKRGDVVLAGSAYGRVRAMLDENGKSITEAGP 670
Query: 301 SIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDIN 360
SIPVEIQGLT+VP +GEE+ V+ +E+KAREIGLFRQGKFRDVKL+KQ+ K ENMF ++
Sbjct: 671 SIPVEIQGLTEVPNAGEEVMVMADERKAREIGLFRQGKFRDVKLAKQQAAKLENMFENMG 730
Query: 361 KEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAI 420
+ +VKNL +IIKTDV GS+E L SL+ LST +V++QV+H AVG I+ESD+NLA+ASKA+
Sbjct: 731 EGEVKNLPMIIKTDVQGSQEALVGSLQKLSTSEVRVQVVHAAVGGISESDVNLAVASKAV 790
Query: 421 IIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGLAEIRQ 480
IIGFN RADAS RKLA+ N ++IRY+NIIY+ + EIK+ ++ ++ EK+E LGL EIRQ
Sbjct: 791 IIGFNTRADASARKLAEANGVDIRYYNIIYDAVDEIKAAMSGMLAPEKREQALGLVEIRQ 850
Query: 481 VILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFEC 539
VILV+KV IAGCY+LEG+ +R S +R+LR+ ++WTGELDSLKRFKD+VKEVKAGFEC
Sbjct: 851 VILVSKVGAIAGCYVLEGVAKRGSSVRLLRDNVVVWTGELDSLKRFKDDVKEVKAGFEC 909
|
One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex. Janthinobacterium sp. (strain Marseille) (taxid: 375286) |
| >sp|A4G7S7|IF2_HERAR Translation initiation factor IF-2 OS=Herminiimonas arsenicoxydans GN=infB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/539 (69%), Positives = 463/539 (85%), Gaps = 1/539 (0%)
Query: 1 MSVKSSVVIKNLMKLGQMVTINQVLDQETAMILVEEMGHVAHASKLNDPESFLLNEYNKN 60
MSVK+S VIK LMKLGQM TINQVLDQETAMILVEEMGHVAHA+KL+DPE+ LL +
Sbjct: 376 MSVKASEVIKQLMKLGQMCTINQVLDQETAMILVEEMGHVAHAAKLDDPEA-LLEIGAEQ 434
Query: 61 ITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF 120
E+L RAP+VT+MGHVDHGKTSLLDYIR+ V EAGGITQHIGAY+V T G ITF
Sbjct: 435 ADVEALPRAPVVTVMGHVDHGKTSLLDYIRRAKVATGEAGGITQHIGAYHVETPRGMITF 494
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK 180
LDTPGHEAFTAMRARGAK TDIV+LVVAADDGVMPQT+EAIAHAK +GVPL+VAINKIDK
Sbjct: 495 LDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTKEAIAHAKAAGVPLVVAINKIDK 554
Query: 181 LDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVT 240
NLDR+KQ+LI+EQV+PEEYGG SPF+ +SAKTG GI+ LLE + LQAE+LELKAPV
Sbjct: 555 PSANLDRVKQELIAEQVVPEEYGGDSPFVPVSAKTGEGIDALLEQVLLQAEVLELKAPVV 614
Query: 241 TPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGP 300
+PA+G+++E++LDKG+GPVAT+L+QSGTLR D+V+AG++YGR+R+ML+ENGK+I EAGP
Sbjct: 615 SPARGLVVEAKLDKGRGPVATILVQSGTLRRGDVVLAGSAYGRVRAMLDENGKSISEAGP 674
Query: 301 SIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDIN 360
SIPVEIQGLT+VP +GEE+ V+ +E+KAREIGLFRQGKFRDVKL+KQ+ K ENMF ++
Sbjct: 675 SIPVEIQGLTEVPNAGEEVMVMADERKAREIGLFRQGKFRDVKLAKQQAAKLENMFENMG 734
Query: 361 KEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAI 420
+ +VKNL +IIKTDV GS+E L SL+ LST +V++QV+H AVG I+ESD+NLA+ASKA+
Sbjct: 735 EGEVKNLPMIIKTDVQGSQEALVGSLQKLSTGEVRVQVVHAAVGGISESDVNLAVASKAV 794
Query: 421 IIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGLAEIRQ 480
IIGFN RADAS RKLA+ N ++IRY+NIIY+ + EIK+ ++ ++ EK+E LGL EIRQ
Sbjct: 795 IIGFNTRADASARKLAEANGVDIRYYNIIYDAVDEIKAAMSGMLSPEKREQALGLVEIRQ 854
Query: 481 VILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFEC 539
VILV+KV IAGCY+LEG+++R + +R+LR+ +IWTGELDSLKRFKD+ KEVK GFEC
Sbjct: 855 VILVSKVGAIAGCYVLEGVVKRGASVRLLRDNVVIWTGELDSLKRFKDDAKEVKFGFEC 913
|
One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex. Herminiimonas arsenicoxydans (taxid: 204773) |
| >sp|Q2KXY7|IF2_BORA1 Translation initiation factor IF-2 OS=Bordetella avium (strain 197N) GN=infB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/550 (64%), Positives = 460/550 (83%), Gaps = 2/550 (0%)
Query: 1 MSVKSSVVIKNLMKLGQMVTINQVLDQETAMILVEEMGHVAHASKLNDPESFLLNEYNKN 60
MSVK++ VIK LMKLGQMVTINQVLDQETAMI+VEE+GHVA A+KL+DPE+FL +E
Sbjct: 470 MSVKAAEVIKQLMKLGQMVTINQVLDQETAMIVVEELGHVAIAAKLDDPEAFL-DETPGV 528
Query: 61 ITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF 120
AE+L RAP+VT+MGHVDHGKTSLLDYIR+ V EAGGITQHIGAY+V T+ GS+TF
Sbjct: 529 SEAEALPRAPVVTVMGHVDHGKTSLLDYIRRAKVAAGEAGGITQHIGAYHVETDRGSVTF 588
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK 180
LDTPGHEAFTAMRARGAK TDIV+LVVAADDGVMPQTREAI HAK +GVPL+VA+NKIDK
Sbjct: 589 LDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTREAIHHAKAAGVPLVVAVNKIDK 648
Query: 181 LDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVT 240
+ N DR+KQ+L++EQV+PEEYGG PF+ +SAKTG GI+ LLEN+ LQAEILEL APV
Sbjct: 649 PEANPDRVKQELVAEQVVPEEYGGDVPFVPVSAKTGAGIDDLLENVLLQAEILELTAPVE 708
Query: 241 TPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGP 300
AKG++IE+RLDKG+GPVAT+L+QSGTL+ D+V+AGAS+GR+R+ML+ENGK + AGP
Sbjct: 709 AAAKGIVIEARLDKGRGPVATILVQSGTLKRGDVVLAGASFGRVRAMLDENGKQVQSAGP 768
Query: 301 SIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDIN 360
SIPVEIQGLT+VP +G+EL + +E++AREI LFRQGKFRDVKL++Q+ K E+MF+++
Sbjct: 769 SIPVEIQGLTEVPAAGDELISLSDERRAREIALFRQGKFRDVKLARQQAAKLESMFDNMG 828
Query: 361 KEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAI 420
E + L +I+KTDV GS+E L +L LSTD+V++QV+H AVG I+ESD+NLAIAS A+
Sbjct: 829 -EGTQTLPLIVKTDVQGSQEALVAALTKLSTDEVRVQVVHAAVGGISESDVNLAIASNAV 887
Query: 421 IIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGLAEIRQ 480
+IGFNVRAD S +KLA N I++RY+NIIY+ + E+K+ ++ ++ EK+E ++GL E+R+
Sbjct: 888 VIGFNVRADQSAKKLADNNGIDLRYYNIIYDAVDEVKAAMSGMLAPEKREEIIGLVEVRE 947
Query: 481 VILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECE 540
V ++++ +AGC +L+GL+RRDS++R+LRN + WTG+LDSL+RFKD+VKEVK+GF+C
Sbjct: 948 VYTISRIGTVAGCMVLDGLVRRDSQVRLLRNNVVTWTGQLDSLRRFKDDVKEVKSGFDCG 1007
Query: 541 RLSRIENQIQ 550
R N +Q
Sbjct: 1008 LTLRGNNDLQ 1017
|
One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex. Bordetella avium (strain 197N) (taxid: 360910) |
| >sp|A9ITX6|IF2_BORPD Translation initiation factor IF-2 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=infB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/550 (65%), Positives = 459/550 (83%), Gaps = 2/550 (0%)
Query: 1 MSVKSSVVIKNLMKLGQMVTINQVLDQETAMILVEEMGHVAHASKLNDPESFLLNEYNKN 60
MSVK++ VIK LMKLGQMVTINQVLDQETAMI+VEE+GHVA A+KL+DPE+FL +E
Sbjct: 427 MSVKAAEVIKQLMKLGQMVTINQVLDQETAMIVVEELGHVAIAAKLDDPEAFL-DETPVA 485
Query: 61 ITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF 120
AE+L RAP+VT+MGHVDHGKTSLLDYIR+ V EAGGITQHIGAY+V T G +TF
Sbjct: 486 SEAEALPRAPVVTVMGHVDHGKTSLLDYIRRAKVASGEAGGITQHIGAYHVETARGVVTF 545
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK 180
LDTPGHEAFTAMRARGAK TDIV+LVVAADDGVMPQTREAI HAK GVPL+VA+NKIDK
Sbjct: 546 LDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTREAIHHAKAGGVPLVVAVNKIDK 605
Query: 181 LDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVT 240
+ N +R+KQ+L++E+V+PEEYGG PF+ +SAKTG GI+ LLEN+ LQAEILEL APV
Sbjct: 606 PEANPERVKQELVAEEVVPEEYGGDVPFVPVSAKTGAGIDDLLENVLLQAEILELTAPVE 665
Query: 241 TPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGP 300
PAKG++IE+RLDKG+GPVAT+L+QSGTL+ D+V+AGAS+GR+R+M++ENGK I EAGP
Sbjct: 666 APAKGLVIEARLDKGRGPVATILVQSGTLKRGDVVLAGASFGRVRAMVDENGKQIQEAGP 725
Query: 301 SIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDIN 360
SIPVEIQGLT+VP +G+EL + +E+KAREI LFRQGKFRDVKL++Q+ K E+MF+++
Sbjct: 726 SIPVEIQGLTEVPAAGDELIALADERKAREIALFRQGKFRDVKLARQQAAKLESMFDNLG 785
Query: 361 KEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAI 420
E + L +I+KTDV GS+E L SL LSTD+V++QV+H AVG I+ESDINLAIAS A+
Sbjct: 786 -EGTQTLPLIVKTDVQGSQEALVASLTKLSTDEVRVQVVHAAVGGISESDINLAIASNAV 844
Query: 421 IIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGLAEIRQ 480
+IGFNVRA+ S +KLA+ N I++RY+NIIY+ + E+K+ ++ ++ EKKE ++GL E+R+
Sbjct: 845 VIGFNVRAEQSAKKLAESNGIDVRYYNIIYDAVDEVKAAMSGMLAPEKKEEVIGLVEVRE 904
Query: 481 VILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECE 540
V ++++ +AGC +L+GL+RRDS+IR+LRN + WTG LDSL+RFKD+VKEVK+GF+C
Sbjct: 905 VYSISRIGNVAGCMVLDGLVRRDSQIRLLRNNVVHWTGHLDSLRRFKDDVKEVKSGFDCG 964
Query: 541 RLSRIENQIQ 550
R N IQ
Sbjct: 965 LTLRGSNDIQ 974
|
One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex. Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) (taxid: 340100) |
| >sp|Q7WHG2|IF2_BORBR Translation initiation factor IF-2 OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) GN=infB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/550 (64%), Positives = 458/550 (83%), Gaps = 2/550 (0%)
Query: 1 MSVKSSVVIKNLMKLGQMVTINQVLDQETAMILVEEMGHVAHASKLNDPESFLLNEYNKN 60
MSVK++ VIK LMKLGQMVTINQVLDQETAMI+V+E GH+A A+KL+DPE+FL +E
Sbjct: 433 MSVKAAEVIKQLMKLGQMVTINQVLDQETAMIVVQEFGHMAIAAKLDDPEAFL-DETAAV 491
Query: 61 ITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF 120
AE+ RAP+VT+MGHVDHGKTSLLDYIR+ V EAGGITQHIGAY+V T G +TF
Sbjct: 492 TEAEAEPRAPVVTVMGHVDHGKTSLLDYIRRAKVASGEAGGITQHIGAYHVETGRGVVTF 551
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK 180
LDTPGHEAFTAMRARGAK TDIV+LVVAADDGVMPQTREAI HAK GVPL+VA+NKIDK
Sbjct: 552 LDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTREAIHHAKAGGVPLVVAVNKIDK 611
Query: 181 LDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVT 240
+ N +R+KQ+L++E+V+PEEYGG PF+ +SAKTG GI+ LLEN+ LQAEILELKAP+
Sbjct: 612 PEANPERVKQELVAEEVVPEEYGGDVPFVPVSAKTGAGIDDLLENVLLQAEILELKAPIE 671
Query: 241 TPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGP 300
PAKG++IE+RLDKG+GPVAT+L+QSGTL+ D+V+AGAS+GR+R+ML+ENGK I AGP
Sbjct: 672 APAKGLVIEARLDKGRGPVATILVQSGTLKRGDVVLAGASFGRVRAMLDENGKQIQTAGP 731
Query: 301 SIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDIN 360
SIPVEIQGLT+VP +G+EL V+ +E+KAREI LFRQGKFRDVKL++Q+ K E+MF+++
Sbjct: 732 SIPVEIQGLTEVPAAGDELMVLSDERKAREIALFRQGKFRDVKLARQQAAKLESMFDNLG 791
Query: 361 KEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAI 420
E + L +I+KTDV GS+E L SL LSTD+V++QV+H AVG I+ESD+NLAIAS A+
Sbjct: 792 -EGTQTLALIVKTDVQGSQEALVSSLTKLSTDEVRVQVVHAAVGGISESDVNLAIASNAV 850
Query: 421 IIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGLAEIRQ 480
+IGFNVRA+ S +KLA+ N I++RY+NIIY+ + E+K+ ++ ++ EK+E ++GL E+R+
Sbjct: 851 VIGFNVRAEQSAKKLAETNGIDLRYYNIIYDAVDEVKAAMSGMLAPEKREEVIGLVEVRE 910
Query: 481 VILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECE 540
V ++++ +AGC +L+G++RRDS++R+LRN + WTG LDSL+RFKD+VKEVK+GF+C
Sbjct: 911 VYTISRIGTVAGCMVLDGVVRRDSQVRLLRNNVVQWTGHLDSLRRFKDDVKEVKSGFDCG 970
Query: 541 RLSRIENQIQ 550
R N +Q
Sbjct: 971 LTLRGNNDLQ 980
|
One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex. Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) (taxid: 257310) |
| >sp|B3R1E4|IF2_CUPTR Translation initiation factor IF-2 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=infB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/539 (65%), Positives = 449/539 (83%)
Query: 1 MSVKSSVVIKNLMKLGQMVTINQVLDQETAMILVEEMGHVAHASKLNDPESFLLNEYNKN 60
M+VK+S VIK +MKLGQMVTINQVLDQETAMI+VEEMGH A+A+KL+DPE+ L+ + ++
Sbjct: 397 MAVKASEVIKQMMKLGQMVTINQVLDQETAMIVVEEMGHKAYAAKLDDPEALLVVDGEEH 456
Query: 61 ITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF 120
AE L R P+VT+MGHVDHGKTSLLDYIR+T V EAGGITQHIGAY+V T+ G ITF
Sbjct: 457 EDAELLPRPPVVTVMGHVDHGKTSLLDYIRRTKVAAGEAGGITQHIGAYHVETDRGVITF 516
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK 180
LDTPGHEAFTAMRARGAK TDIV+LVVAADDGVMPQT+EAIAHAK +GVP++VAINK+DK
Sbjct: 517 LDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTKEAIAHAKAAGVPIVVAINKVDK 576
Query: 181 LDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVT 240
+ N DR+KQ+L++EQV+PEEYGG SPF+ +SAKTG GI LLE +SLQAE+LELKAPV
Sbjct: 577 PEANPDRVKQELVAEQVVPEEYGGDSPFVPVSAKTGAGIEDLLEQVSLQAEVLELKAPVD 636
Query: 241 TPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGP 300
PAKG+++E++LDKGKGP+AT+L+ SGTL+ D+V+AG++YGR+R+ML+ENGK EAGP
Sbjct: 637 APAKGLVVEAQLDKGKGPIATILVSSGTLKRGDVVLAGSAYGRVRAMLDENGKATKEAGP 696
Query: 301 SIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDIN 360
SIPVEIQGL++VP +GEE+ V+ +E+KAREI LFRQGKFRDVKL+KQ+ K ENM +
Sbjct: 697 SIPVEIQGLSEVPAAGEEVLVLPDERKAREIALFRQGKFRDVKLAKQQAAKLENMLEQMT 756
Query: 361 KEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAI 420
+ +V+ L +I+K DV GS+E L +SL+ LST +V++Q++H VG I+ESD+NLA ASKA+
Sbjct: 757 EGEVQTLPLIVKADVQGSQEALVQSLQKLSTAEVRVQIVHGGVGGISESDVNLATASKAV 816
Query: 421 IIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGLAEIRQ 480
IIGFNVRADA RKLA+ N I+IRY+NIIY+ + EIK+ ++ ++ EK+E G E+RQ
Sbjct: 817 IIGFNVRADAGARKLAEHNGIDIRYYNIIYDAVDEIKAAMSGMLAPEKRETTTGTVEVRQ 876
Query: 481 VILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFEC 539
V V KV +AGC + +G+++R+S +R+LRN +I GELDSLKRFKD+VKEVK GFEC
Sbjct: 877 VFRVPKVGAVAGCMVTDGVVKRNSLVRVLRNNVVIHDGELDSLKRFKDDVKEVKQGFEC 935
|
One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex. Cupriavidus taiwanensis (strain R1 / LMG 19424) (taxid: 164546) |
| >sp|Q7W9A5|IF2_BORPA Translation initiation factor IF-2 OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) GN=infB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/550 (64%), Positives = 457/550 (83%), Gaps = 2/550 (0%)
Query: 1 MSVKSSVVIKNLMKLGQMVTINQVLDQETAMILVEEMGHVAHASKLNDPESFLLNEYNKN 60
MSVK++ VIK LMKLGQMVTINQVLDQETAMI+V+E GH A A+KL+DPE+FL +E
Sbjct: 405 MSVKAAEVIKQLMKLGQMVTINQVLDQETAMIVVQEFGHTAIAAKLDDPEAFL-DETAAV 463
Query: 61 ITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF 120
AE+ RAP+VT+MGHVDHGKTSLLDYIR+ V EAGGITQHIGAY+V T G +TF
Sbjct: 464 TEAEAEPRAPVVTVMGHVDHGKTSLLDYIRRAKVASGEAGGITQHIGAYHVETGRGVVTF 523
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK 180
LDTPGHEAFTAMRARGAK TDIV+LVVAADDGVMPQTREAI HAK GVPL+VA+NKIDK
Sbjct: 524 LDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTREAIHHAKAGGVPLVVAVNKIDK 583
Query: 181 LDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVT 240
+ N +R+KQ+L++E+V+PEEYGG PF+ +SAKTG GI+ LLEN+ LQAEILELKAP+
Sbjct: 584 PEANPERVKQELVAEEVVPEEYGGDVPFVPVSAKTGAGIDDLLENVLLQAEILELKAPIE 643
Query: 241 TPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGP 300
PAKG++IE+RLDKG+GPVAT+L+QSGTL+ D+V+AGAS+GR+R+ML+ENGK I AGP
Sbjct: 644 VPAKGLVIEARLDKGRGPVATILVQSGTLKRGDVVLAGASFGRVRAMLDENGKQIQTAGP 703
Query: 301 SIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDIN 360
SIPVEIQGLT+VP +G+EL V+ +E+KAREI LFRQGKFRDVKL++Q+ K E+MF+++
Sbjct: 704 SIPVEIQGLTEVPAAGDELMVLSDERKAREIALFRQGKFRDVKLARQQAAKLESMFDNLG 763
Query: 361 KEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAI 420
E + L +I+KTDV GS+E L SL LSTD+V++QV+H AVG I+ESD+NLAIAS A+
Sbjct: 764 -EGTQTLALIVKTDVQGSQEALVSSLTKLSTDEVRVQVVHAAVGGISESDVNLAIASNAV 822
Query: 421 IIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGLAEIRQ 480
+IGFNVRA+ S +KLA+ N I++RY+NIIY+ + E+K+ ++ ++ EK+E ++GL E+R+
Sbjct: 823 VIGFNVRAEQSAKKLAETNGIDLRYYNIIYDAVDEVKAAMSGMLAPEKREEVIGLVEVRE 882
Query: 481 VILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECE 540
V ++++ +AGC +L+G++RRDS++R+LRN + WTG LDSL+RFKD+VKEVK+GF+C
Sbjct: 883 VYTISRIGTVAGCMVLDGVVRRDSQVRLLRNNVVQWTGHLDSLRRFKDDVKEVKSGFDCG 942
Query: 541 RLSRIENQIQ 550
R N +Q
Sbjct: 943 LTLRGNNDLQ 952
|
One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex. Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) (taxid: 257311) |
| >sp|Q7VYR2|IF2_BORPE Translation initiation factor IF-2 OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=infB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/550 (63%), Positives = 456/550 (82%), Gaps = 2/550 (0%)
Query: 1 MSVKSSVVIKNLMKLGQMVTINQVLDQETAMILVEEMGHVAHASKLNDPESFLLNEYNKN 60
MSVK++ VIK LMKLGQMVTINQVLDQETAMI+V+E GH A A+KL+DPE+FL +E
Sbjct: 433 MSVKAAEVIKQLMKLGQMVTINQVLDQETAMIVVQEFGHTAIAAKLDDPEAFL-DETAAV 491
Query: 61 ITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF 120
AE+ RAP+VT+MGHVDHGKTSLLDYIR+ V EAGGITQHIGAY+V T G +TF
Sbjct: 492 TEAEAEPRAPVVTVMGHVDHGKTSLLDYIRRAKVASGEAGGITQHIGAYHVETGRGVVTF 551
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK 180
LDTPGHEAFTAMRARGAK TDIV+LVVAADDGVMPQTREAI HAK GVPL+VA+NKIDK
Sbjct: 552 LDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTREAIHHAKAGGVPLVVAVNKIDK 611
Query: 181 LDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVT 240
+ N +R+KQ+L++E+V+PEEYGG PF+ +SAKTG GI+ LLEN+ LQAEILELKAP+
Sbjct: 612 PEANPERVKQELVAEEVVPEEYGGDVPFVPVSAKTGAGIDDLLENVLLQAEILELKAPIE 671
Query: 241 TPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGP 300
PAKG++IE+RLDKG+GPVAT+L+QSGTL+ D+V+AGAS+GR+R+ML+ENGK I AGP
Sbjct: 672 APAKGLVIEARLDKGRGPVATILVQSGTLKRGDVVLAGASFGRVRAMLDENGKQIQTAGP 731
Query: 301 SIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDIN 360
SIPVEIQGLT+VP +G+EL V+ +E+KAREI LFRQGKFRDVKL++Q+ E+MF+++
Sbjct: 732 SIPVEIQGLTEVPAAGDELMVLSDERKAREIALFRQGKFRDVKLARQQAANLESMFDNLG 791
Query: 361 KEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAI 420
E + L +I+KTDV GS+E L SL LSTD+V++QV+H AVG I+ESD+NLAIAS A+
Sbjct: 792 -EGTQTLALIVKTDVQGSQEALVSSLTKLSTDEVRVQVVHAAVGGISESDVNLAIASNAV 850
Query: 421 IIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGLAEIRQ 480
+IGFNVRA+ S +KLA+ N I++RY+NIIY+ + E+K+ ++ ++ EK+E ++GL E+R+
Sbjct: 851 VIGFNVRAEQSAKKLAETNGIDLRYYNIIYDAVDEVKAAMSGMLAPEKREEVIGLVEVRE 910
Query: 481 VILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECE 540
V ++++ +AGC +L+G++RRDS++R+LRN + WTG LDSL+RFKD+VKEVK+GF+C
Sbjct: 911 VYTISRIGTVAGCMVLDGVVRRDSQVRLLRNNVVQWTGHLDSLRRFKDDVKEVKSGFDCG 970
Query: 541 RLSRIENQIQ 550
R N +Q
Sbjct: 971 LTLRGNNDLQ 980
|
One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex. Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) (taxid: 257313) |
| >sp|Q0K9B9|IF2_CUPNH Translation initiation factor IF-2 OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=infB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/539 (64%), Positives = 446/539 (82%)
Query: 1 MSVKSSVVIKNLMKLGQMVTINQVLDQETAMILVEEMGHVAHASKLNDPESFLLNEYNKN 60
M+VK+S VIK +MKLGQMVTINQVLDQETAMI+VEEMGH A+A+KL+DPE+ L+ ++
Sbjct: 396 MAVKASEVIKQMMKLGQMVTINQVLDQETAMIVVEEMGHKAYAAKLDDPEALLVVGGEEH 455
Query: 61 ITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF 120
AE L R P+VT+MGHVDHGKTSLLDYIR+T V EAGGITQHIGAY+V T+ G ITF
Sbjct: 456 TDAELLPRPPVVTVMGHVDHGKTSLLDYIRRTKVAAGEAGGITQHIGAYHVETDRGVITF 515
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK 180
LDTPGHEAFTAMRARGAK TDIV+LVVAADDGVMPQT+EAIAHAK +GVP++VAINKIDK
Sbjct: 516 LDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTKEAIAHAKAAGVPIVVAINKIDK 575
Query: 181 LDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVT 240
D N DR+KQ+L++EQV+PEEYGG SPF+ +SAK G G+ LLE + LQAE+LEL APV
Sbjct: 576 PDANPDRVKQELVAEQVVPEEYGGDSPFVPVSAKMGTGVEDLLEQVLLQAEVLELTAPVD 635
Query: 241 TPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGP 300
PAKG+++E++LDKGKGP+AT+L+ SGTL+ D+V+AG++YGR+R+ML+ENGK EAGP
Sbjct: 636 APAKGLVVEAQLDKGKGPIATILVSSGTLKRGDVVLAGSAYGRVRAMLDENGKPTKEAGP 695
Query: 301 SIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDIN 360
SIPVEIQGL++VP +GEE+ V+ +E+KAREI LFRQGKFRDVKL+KQ+ K ENM +
Sbjct: 696 SIPVEIQGLSEVPAAGEEVLVLPDERKAREIALFRQGKFRDVKLAKQQAAKLENMLEQMA 755
Query: 361 KEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAI 420
+ +V+ L +I+K DV GS+E L +SL+ LST +V++Q++H VG I+ESD+NLA ASKA+
Sbjct: 756 EGEVQTLPLIVKADVQGSQEALVQSLQKLSTAEVRVQIVHGGVGGISESDVNLATASKAV 815
Query: 421 IIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGLAEIRQ 480
IIGFNVRADA RKLA+ N I+IRY+NIIY+ + EIK+ ++ ++ EK+E +G E+RQ
Sbjct: 816 IIGFNVRADAGARKLAEHNGIDIRYYNIIYDAVDEIKAAMSGMLAPEKRETTIGQVEVRQ 875
Query: 481 VILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFEC 539
V V K+ +AGC + +GL++R+S +R+LRN +I GELDSLKRFKD+VKEVK GFEC
Sbjct: 876 VFRVPKIGAVAGCMVTDGLVKRNSLVRVLRNNVVIHDGELDSLKRFKDDVKEVKQGFEC 934
|
One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex. Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666) |
| >sp|Q1LLR6|IF2_RALME Translation initiation factor IF-2 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=infB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/539 (64%), Positives = 447/539 (82%)
Query: 1 MSVKSSVVIKNLMKLGQMVTINQVLDQETAMILVEEMGHVAHASKLNDPESFLLNEYNKN 60
M+VK+S VIK +MKLGQMVTINQVLDQETAMI+VEEMGH A A+KL+DPE+ L+ + +
Sbjct: 413 MAVKASEVIKQMMKLGQMVTINQVLDQETAMIVVEEMGHKAFAAKLDDPEALLVVDGEDH 472
Query: 61 ITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF 120
AE L R P+VT+MGHVDHGKTSLLDYIR+T V EAGGITQHIGAY+V T+ G ITF
Sbjct: 473 GDAEMLPRPPVVTVMGHVDHGKTSLLDYIRRTKVAAGEAGGITQHIGAYHVETDRGVITF 532
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK 180
LDTPGHEAFTAMRARGAK TDIV+LVVAADDGVMPQT+EAIAHAK +GVP++VAI K+DK
Sbjct: 533 LDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTKEAIAHAKAAGVPIVVAITKVDK 592
Query: 181 LDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVT 240
+ N DR+KQ+L++EQV+PEEYGG SPF+ +SAKTG GI+ LLEN+ LQAE+LEL+APV
Sbjct: 593 PEANPDRVKQELVAEQVVPEEYGGESPFVPVSAKTGQGIDDLLENVLLQAEVLELRAPVD 652
Query: 241 TPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGP 300
PAKG+++E++LDKGKGP+AT+L+ SGTL+ D+V+AG++YGR+R+ML+ENGK EAGP
Sbjct: 653 APAKGLVVEAQLDKGKGPIATILVSSGTLKRGDVVLAGSAYGRVRAMLDENGKPSKEAGP 712
Query: 301 SIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDIN 360
SIPVEIQGL++VP +GEE+ V+ +E+KAREI LFRQGKFRDVKL+KQ+ K E M +
Sbjct: 713 SIPVEIQGLSEVPAAGEEVLVLPDERKAREIALFRQGKFRDVKLAKQQAAKLETMLEQMA 772
Query: 361 KEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAI 420
+ +V+ L +I+K DV GS+E L +SL+ LST +V++Q++H VG I+ESD+NLA ASKA+
Sbjct: 773 EGEVQTLPLIVKADVQGSQEALVQSLQKLSTSEVRVQIVHGGVGGISESDVNLATASKAV 832
Query: 421 IIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGLAEIRQ 480
IIGFNVRADA RKLA+ N I+IRY+NIIY+ + EIK+ ++ ++ EK+E +G E+RQ
Sbjct: 833 IIGFNVRADAGARKLAEHNGIDIRYYNIIYDAVDEIKAAMSGMLAPEKRETTIGQVEVRQ 892
Query: 481 VILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFEC 539
V V KV +AGC + +GLI+R+S +R+LRN +I GELDSLKRFKD+VKEVK GFEC
Sbjct: 893 VFRVPKVGAVAGCMVTDGLIKRNSMVRVLRNNVVIHDGELDSLKRFKDDVKEVKQGFEC 951
|
One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex. Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) (taxid: 266264) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1527 | ||||||
| 340788622 | 611 | GTP-binding protein TypA [Collimonas fun | 0.389 | 0.973 | 0.748 | 0.0 | |
| 152980795 | 612 | GTP-binding elongation factor [Janthinob | 0.389 | 0.972 | 0.741 | 0.0 | |
| 134095607 | 612 | GTP-binding elongation factor family pro | 0.389 | 0.972 | 0.738 | 0.0 | |
| 399017457 | 625 | GTP-binding protein TypA/BipA [Herbaspir | 0.389 | 0.952 | 0.739 | 0.0 | |
| 300312895 | 627 | GTP-binding elongation factor protein [H | 0.387 | 0.942 | 0.738 | 0.0 | |
| 409407355 | 613 | GTP-binding elongation factor protein [H | 0.387 | 0.964 | 0.733 | 0.0 | |
| 415942722 | 613 | GTP-binding protein TypA/BipA [Herbaspir | 0.387 | 0.964 | 0.733 | 0.0 | |
| 398832207 | 610 | GTP-binding protein TypA/BipA [Herbaspir | 0.387 | 0.968 | 0.729 | 0.0 | |
| 329905070 | 610 | GTP-binding protein TypA/BipA [Oxalobact | 0.388 | 0.973 | 0.709 | 0.0 | |
| 237748741 | 610 | GTP-binding elongation factor family pro | 0.388 | 0.973 | 0.699 | 0.0 |
| >gi|340788622|ref|YP_004754087.1| GTP-binding protein TypA [Collimonas fungivorans Ter331] gi|340553889|gb|AEK63264.1| GTP-binding protein TypA/BipA [Collimonas fungivorans Ter331] | Back alignment and taxonomy information |
|---|
Score = 952 bits (2461), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/596 (74%), Positives = 521/596 (87%), Gaps = 1/596 (0%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AIIAHVDHGKTTL+D LLRQSGTFR NQ+++AR+MDSN+IEKERGITI SKNC++EY GT
Sbjct: 12 AIIAHVDHGKTTLVDQLLRQSGTFRDNQHVDARVMDSNDIEKERGITILSKNCAVEYKGT 71
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
INI+DTPGHADFGGEVER+LSMVD+VLLL+DA EGPMPQTRFVTRKAL LG KPIVVVN
Sbjct: 72 HINIVDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKALALGLKPIVVVN 131
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
KIDR NA P+ V+ATF+LFDKL AT+EQLDFP+IY S GYA R GNM PLF+
Sbjct: 132 KIDRENADPQKAVNATFELFDKLGATDEQLDFPIIYASGFKGYAGLEDTVRDGNMEPLFD 191
Query: 1106 AILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPN 1165
AILK+VP +D+ N PLQLQI SLEYSSY+GKIG+GRIL G++K+LQDVV MNGPDDKP
Sbjct: 192 AILKHVPAREDDPNGPLQLQITSLEYSSYVGKIGVGRILRGKVKALQDVVWMNGPDDKPT 251
Query: 1166 KAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTL 1225
KA+INQ+ F+GLDRVL +EAL+GDIVLI GIEEI IGSTIC P P GLPML +DEPTL
Sbjct: 252 KARINQVLTFRGLDRVLADEALAGDIVLINGIEEISIGSTICAPDHPEGLPMLKVDEPTL 311
Query: 1226 TINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHL 1285
T+NFMVNNSPLAGREGKF+TTRQIK+RLD E+K N+ LRV Q + DDS YEVSGRGELHL
Sbjct: 312 TMNFMVNNSPLAGREGKFVTTRQIKDRLDRELKANMALRVVQAEGDDSTYEVSGRGELHL 371
Query: 1286 TILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDL 1345
TILIENMRREGYEL+VSRPRV+FK ++G EPYENL VD+EE NQG +M++L R GDL
Sbjct: 372 TILIENMRREGYELAVSRPRVVFKMVDGVRQEPYENLTVDVEEANQGGVMEELGRRRGDL 431
Query: 1346 KNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKR 1405
+N+E + K RVRLEYRIP+RGLIGFQ EF+TLTRGTGL+SHVF+EYAP + SK +LG R
Sbjct: 432 QNMEPDGKGRVRLEYRIPARGLIGFQGEFMTLTRGTGLMSHVFDEYAPV-DTSKGELGGR 490
Query: 1406 RNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQL 1465
RNGVLISQ G AVAY++WKLQDRGR+F++HND VYEGMIIGIHSRDNDL+VNPIK KQL
Sbjct: 491 RNGVLISQDDGAAVAYAIWKLQDRGRMFVSHNDPVYEGMIIGIHSRDNDLVVNPIKGKQL 550
Query: 1466 TNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKK 1521
TN+RSSG+DEA++L+ PI+++LEYA+EFI+DDELVE+TPK+IRLRKR+LKE+ERKK
Sbjct: 551 TNVRSSGTDEAVRLVPPIEMSLEYAVEFIDDDELVEVTPKSIRLRKRYLKEHERKK 606
|
Source: Collimonas fungivorans Ter331 Species: Collimonas fungivorans Genus: Collimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|152980795|ref|YP_001354182.1| GTP-binding elongation factor [Janthinobacterium sp. Marseille] gi|151280872|gb|ABR89282.1| GTP-binding elongation factor [Janthinobacterium sp. Marseille] | Back alignment and taxonomy information |
|---|
Score = 951 bits (2458), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/596 (74%), Positives = 526/596 (88%), Gaps = 1/596 (0%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AIIAHVDHGKTTL+D LLRQSGTFR+NQ ++AR+MDSN+IEKERGITI SKNC++EY GT
Sbjct: 12 AIIAHVDHGKTTLVDQLLRQSGTFRENQQVDARVMDSNDIEKERGITILSKNCAVEYKGT 71
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
INI+DTPGHADFGGEVER+LSMVD+VLLL+DA EGPMPQTRFVTRKAL LG KPIVVVN
Sbjct: 72 HINIVDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKALALGLKPIVVVN 131
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
KIDR NA P+ V+ATF+LFDKL AT+EQLDFP++Y S GYA R GNM PLF+
Sbjct: 132 KIDRENADPQKAVNATFELFDKLGATDEQLDFPIVYASGFKGYAGLEDTVRDGNMEPLFD 191
Query: 1106 AILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPN 1165
AIL++VP +D+ + PLQLQI SLEYSSY+GKIG+GRIL+GR+K+LQDVV MNGP+DKP
Sbjct: 192 AILEHVPAREDDPDAPLQLQITSLEYSSYVGKIGVGRILAGRVKALQDVVWMNGPEDKPT 251
Query: 1166 KAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTL 1225
KA+INQ+ FKGLDRVLV+EAL+GDIVLI GIEEI IGSTIC PNGLPML +DEPTL
Sbjct: 252 KARINQVLTFKGLDRVLVDEALAGDIVLINGIEEISIGSTICAVDAPNGLPMLKVDEPTL 311
Query: 1226 TINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHL 1285
T+NFMVN+SPLAGREGKF+TTRQI++RL+ E+K N+ LRV Q++ DDS YEVSGRGELHL
Sbjct: 312 TMNFMVNSSPLAGREGKFVTTRQIRDRLEKELKANMALRVVQSEDDDSTYEVSGRGELHL 371
Query: 1286 TILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDL 1345
TILIENMRREG+E++VSRPRV+FK ++G +EPYENL VD+EE+NQG +M++L R GDL
Sbjct: 372 TILIENMRREGFEMAVSRPRVVFKMVDGVRHEPYENLTVDVEEVNQGGVMEELGRRRGDL 431
Query: 1346 KNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKR 1405
+N+E + K RVRLEYRIP+RGLIGFQ EF+TLTRGTGL+SHVF+EYAP N +K DLG R
Sbjct: 432 QNMEPDGKGRVRLEYRIPARGLIGFQGEFMTLTRGTGLMSHVFDEYAPVDN-TKGDLGGR 490
Query: 1406 RNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQL 1465
RNGVLISQ G AVAY++WKLQDRGR+F++HND VYEGMIIGIHSRDNDL+VNPIK KQL
Sbjct: 491 RNGVLISQDDGAAVAYAIWKLQDRGRMFVSHNDPVYEGMIIGIHSRDNDLVVNPIKGKQL 550
Query: 1466 TNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKK 1521
TN+RSSG+DEA++L+ PI+++LEYA+EFI+DDELVE+TPK+IRLRKRFLKE+ERKK
Sbjct: 551 TNVRSSGTDEAVRLVPPIEMSLEYAVEFIDDDELVEVTPKSIRLRKRFLKEHERKK 606
|
Source: Janthinobacterium sp. Marseille Species: Janthinobacterium sp. Marseille Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|134095607|ref|YP_001100682.1| GTP-binding elongation factor family protein [Herminiimonas arsenicoxydans] gi|133739510|emb|CAL62561.1| GTP-binding protein TypA/BipA (Tyrosine phosphorylated protein A) [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
|---|
Score = 948 bits (2451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/596 (73%), Positives = 526/596 (88%), Gaps = 1/596 (0%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AIIAHVDHGKTTL+D LLRQSGTFR NQ I+AR+MDS +IEKERGITI SKNC++EY GT
Sbjct: 12 AIIAHVDHGKTTLVDQLLRQSGTFRDNQQIDARVMDSGDIEKERGITILSKNCAVEYKGT 71
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
INI+DTPGHADFGGEVER+LSMVD+VLLL+DA EGPMPQTRFVTRKAL LG KPIVV+N
Sbjct: 72 HINIVDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKALALGLKPIVVLN 131
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
KIDR AR EW ++ATF+LFDKL ATEEQLDFP++Y S L+GYA R GNM PLF+
Sbjct: 132 KIDRPGARAEWAINATFELFDKLGATEEQLDFPIVYASGLNGYAGLTPDVRGGNMEPLFD 191
Query: 1106 AILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPN 1165
AIL++VP +D+ + PLQLQI SLEYSSY+GKIG+GRIL+GR+K+LQDVV MNGPDDKP
Sbjct: 192 AILEHVPARQDDPDAPLQLQITSLEYSSYVGKIGVGRILAGRVKALQDVVWMNGPDDKPT 251
Query: 1166 KAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTL 1225
KA+INQ+ FKGLDRVLV+EAL+GDIVLI GIEEI IG+TIC P PNGLPML +DEPTL
Sbjct: 252 KARINQVLTFKGLDRVLVDEALAGDIVLINGIEEIGIGTTICAPDHPNGLPMLKVDEPTL 311
Query: 1226 TINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHL 1285
T+NFMVNNSPLAGREGKF+TTRQI++RL+ E+K N+ LRV Q+++DDS YEVSGRGELHL
Sbjct: 312 TMNFMVNNSPLAGREGKFVTTRQIRDRLERELKANMALRVVQSENDDSTYEVSGRGELHL 371
Query: 1286 TILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDL 1345
TILIENMRREG+EL+VSRPRV+FK ++G +EP+ENL +D+EE NQG +M++L R GDL
Sbjct: 372 TILIENMRREGFELAVSRPRVVFKMVDGVRHEPFENLTIDVEETNQGGVMEELGRRRGDL 431
Query: 1346 KNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKR 1405
+N+E + K RVRLEY IP+RGLIGFQ EF+TLTRGTGL+SHVF++YAP + SK +LG R
Sbjct: 432 QNMEPDGKGRVRLEYHIPARGLIGFQGEFMTLTRGTGLMSHVFDDYAPV-DVSKGELGGR 490
Query: 1406 RNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQL 1465
RNGVLISQ G AVAY++WKLQDRGR+F++HND VYEGMIIGIHSRDNDL+VNPIK KQL
Sbjct: 491 RNGVLISQDDGAAVAYAIWKLQDRGRMFVSHNDPVYEGMIIGIHSRDNDLVVNPIKGKQL 550
Query: 1466 TNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKK 1521
TN+RSSG+DEA++L+ PI+++LEYA+EFI+DDELVE+TPK+IRLRKR+LKE+ERKK
Sbjct: 551 TNVRSSGTDEAVRLVPPIEMSLEYAVEFIDDDELVEVTPKSIRLRKRYLKEHERKK 606
|
Source: Herminiimonas arsenicoxydans Species: Herminiimonas arsenicoxydans Genus: Herminiimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|399017457|ref|ZP_10719649.1| GTP-binding protein TypA/BipA [Herbaspirillum sp. CF444] gi|398103331|gb|EJL93502.1| GTP-binding protein TypA/BipA [Herbaspirillum sp. CF444] | Back alignment and taxonomy information |
|---|
Score = 946 bits (2446), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/596 (73%), Positives = 522/596 (87%), Gaps = 1/596 (0%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AIIAHVDHGKTTL+D LLRQSGTFR+NQ ++AR+MDSN+IEKERGITI SKNC++EY GT
Sbjct: 26 AIIAHVDHGKTTLVDQLLRQSGTFRENQQVDARVMDSNDIEKERGITILSKNCAVEYKGT 85
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
INI+DTPGHADFGGEVER+LSMVD+VLLL+DA EGPMPQTRFVTRKAL LG KPIVVVN
Sbjct: 86 HINIVDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKALALGLKPIVVVN 145
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
KIDR NA P+ V+ATF+LFDKL AT+EQLDFP++Y S GYA R GNM PLF+
Sbjct: 146 KIDRENADPQKAVNATFELFDKLGATDEQLDFPIVYASGFKGYAGLEDTVRDGNMEPLFD 205
Query: 1106 AILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPN 1165
AIL++VP +D+ + PLQLQI SLEYSSY+GKIG+GRIL GR++ LQDVV MNGPDDKP
Sbjct: 206 AILEHVPAREDDPDGPLQLQITSLEYSSYVGKIGVGRILRGRVRGLQDVVWMNGPDDKPT 265
Query: 1166 KAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTL 1225
KA+INQ+ F+GL+RV V EAL+GDIVLI GIEEI IGSTIC P P GLPML IDEPTL
Sbjct: 266 KARINQVLTFRGLERVQVEEALAGDIVLINGIEEISIGSTICAPDAPEGLPMLKIDEPTL 325
Query: 1226 TINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHL 1285
T+NFMVN+SPLAGREGKF+TTRQI++RLD E+K+N+ LRV Q ++DDS YEVSGRGELHL
Sbjct: 326 TMNFMVNSSPLAGREGKFVTTRQIRDRLDRELKSNMALRVVQAENDDSTYEVSGRGELHL 385
Query: 1286 TILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDL 1345
TILIENMRREGYEL+VSRPRV+FK ++G +EPYENL VD+EE +QG +M++L R GDL
Sbjct: 386 TILIENMRREGYELAVSRPRVVFKMVDGVRHEPYENLTVDVEETSQGGVMEELGRRRGDL 445
Query: 1346 KNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKR 1405
+N+E + K RVRLEYRIP+RGLIGFQ EF+TLTRGTGL+SHVF++YAP N SK +LG R
Sbjct: 446 QNMEPDGKGRVRLEYRIPARGLIGFQGEFMTLTRGTGLMSHVFDDYAPVDN-SKGELGGR 504
Query: 1406 RNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQL 1465
RNGVLISQ G AVAY++WKLQDRGR+F++HND VYEGMIIGIHSRDNDL+VNPIK KQL
Sbjct: 505 RNGVLISQDDGAAVAYAIWKLQDRGRMFVSHNDPVYEGMIIGIHSRDNDLVVNPIKGKQL 564
Query: 1466 TNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKK 1521
TN+RSSG+DEA++L+ PI+++LEYA+EFI+DDELVE+TPK+IRLRKRFLKE+ERKK
Sbjct: 565 TNVRSSGTDEAVRLVPPIEMSLEYAVEFIDDDELVEVTPKSIRLRKRFLKEHERKK 620
|
Source: Herbaspirillum sp. CF444 Species: Herbaspirillum sp. CF444 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|300312895|ref|YP_003776987.1| GTP-binding elongation factor protein [Herbaspirillum seropedicae SmR1] gi|300075680|gb|ADJ65079.1| GTP-binding elongation factor protein [Herbaspirillum seropedicae SmR1] | Back alignment and taxonomy information |
|---|
Score = 939 bits (2428), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/592 (73%), Positives = 519/592 (87%), Gaps = 1/592 (0%)
Query: 930 HVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINI 989
HVDHGKTTL+D LLRQSGTFR NQ ++ R+MDSN+IEKERGITI SKNC++EY GT INI
Sbjct: 30 HVDHGKTTLVDQLLRQSGTFRDNQQVDNRVMDSNDIEKERGITILSKNCAVEYKGTHINI 89
Query: 990 IDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDR 1049
+DTPGHADFGGEVER+LSMVD+VLLL+DA EGPMPQTRFVTRKAL LG KPIVV+NKIDR
Sbjct: 90 VDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKALALGLKPIVVLNKIDR 149
Query: 1050 SNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109
AR EW ++ATF+LFDKL ATEEQLDFPVIY S L+GYA+ + +AR+GNM PLF+AILK
Sbjct: 150 PGARAEWAINATFELFDKLGATEEQLDFPVIYASGLNGYASLDPEAREGNMEPLFDAILK 209
Query: 1110 YVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKI 1169
YVP KD+ + PLQLQI SLEYSSY+GKIG+GRIL+GR+K QDVV MNGPDDKP KA+I
Sbjct: 210 YVPARKDDPDAPLQLQITSLEYSSYVGKIGVGRILAGRVKGGQDVVWMNGPDDKPTKARI 269
Query: 1170 NQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINF 1229
NQ+ FKGL+RVLV+EAL+GDIVLI GIEEI IGSTIC P PNGLPML +DEPTLT+NF
Sbjct: 270 NQVLTFKGLERVLVDEALAGDIVLINGIEEIGIGSTICSPDAPNGLPMLKVDEPTLTMNF 329
Query: 1230 MVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILI 1289
MVN SPLAGREGKF+TTRQI++RL+ E+K+N+ LRV Q ++DDS YEVSGRGELHLTILI
Sbjct: 330 MVNTSPLAGREGKFVTTRQIRDRLEKELKSNMALRVVQAENDDSTYEVSGRGELHLTILI 389
Query: 1290 ENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIE 1349
ENMRREG+EL+VSRPRV+F+ +NG EPYENL VD+EE +QG +M++L R GDL+N+E
Sbjct: 390 ENMRREGFELAVSRPRVVFRMVNGVREEPYENLTVDVEETHQGGVMEELGRRRGDLQNME 449
Query: 1350 INEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGV 1409
+ K RVRLEY IP+RGLIGFQ EF+TLTRGTGL+SHVF++Y P + +K +L RRNGV
Sbjct: 450 PDGKGRVRLEYHIPARGLIGFQGEFMTLTRGTGLMSHVFDDYKPV-DTTKGELAGRRNGV 508
Query: 1410 LISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIR 1469
LISQ G AVAY+LWKLQDRGR+F++HND VYEGMIIGIHSRDNDL+VNPIK KQLTN+R
Sbjct: 509 LISQDDGAAVAYALWKLQDRGRMFVSHNDPVYEGMIIGIHSRDNDLVVNPIKGKQLTNVR 568
Query: 1470 SSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKK 1521
+SG+DEA++L+ PI+++LEYA+EFI DDELVE+TPK+IRLRKR LKE+ERKK
Sbjct: 569 ASGTDEAVRLVPPIELSLEYAVEFIEDDELVEVTPKSIRLRKRHLKEHERKK 620
|
Source: Herbaspirillum seropedicae SmR1 Species: Herbaspirillum seropedicae Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|409407355|ref|ZP_11255806.1| GTP-binding elongation factor protein [Herbaspirillum sp. GW103] gi|386433106|gb|EIJ45932.1| GTP-binding elongation factor protein [Herbaspirillum sp. GW103] | Back alignment and taxonomy information |
|---|
Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/592 (73%), Positives = 518/592 (87%), Gaps = 1/592 (0%)
Query: 930 HVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINI 989
HVDHGKTTL+D LLRQSGTFR NQ ++ R+MDSN+IEKERGITI SKNC++EY GT INI
Sbjct: 16 HVDHGKTTLVDQLLRQSGTFRDNQQVDNRVMDSNDIEKERGITILSKNCAVEYKGTHINI 75
Query: 990 IDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDR 1049
+DTPGHADFGGEVER+LSMVD+VLLL+DA EGPMPQTRFVTRKAL LG KPIVV+NKIDR
Sbjct: 76 VDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKALALGLKPIVVLNKIDR 135
Query: 1050 SNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109
AR EW ++ATF+LFDKL ATEEQLDFPVIY S L+GYA+ + + R+GNM PLF+AILK
Sbjct: 136 PGARAEWAINATFELFDKLGATEEQLDFPVIYASGLNGYASLDPETREGNMEPLFDAILK 195
Query: 1110 YVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKI 1169
YVP KD+ + PLQLQI SLEYSSY+GKIG+GRIL+GR+K QDVV MNGP+DKP KA+I
Sbjct: 196 YVPARKDDPDAPLQLQITSLEYSSYVGKIGVGRILAGRVKGGQDVVWMNGPEDKPTKARI 255
Query: 1170 NQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINF 1229
NQ+ FKGL+RVLV+EAL+GDIVLI GIEEI IGSTIC P PNGLPML +DEPTLT+NF
Sbjct: 256 NQVLTFKGLERVLVDEALAGDIVLINGIEEIGIGSTICAPDAPNGLPMLKVDEPTLTMNF 315
Query: 1230 MVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILI 1289
MVN SPLAGREGKF+TTRQI++RL+ E+K+N+ LRV Q ++DDS YEVSGRGELHLTILI
Sbjct: 316 MVNTSPLAGREGKFVTTRQIRDRLEKELKSNMALRVVQAENDDSTYEVSGRGELHLTILI 375
Query: 1290 ENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIE 1349
ENMRREG+EL+VSRPRV+F+ ++G EPYENL VD+EE +QG +M++L R GDL+N+E
Sbjct: 376 ENMRREGFELAVSRPRVVFRMVDGVREEPYENLTVDVEETHQGGVMEELGRRRGDLQNME 435
Query: 1350 INEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGV 1409
+ K RVRLEY IP+RGLIGFQ EF+TLTRGTGL+SHVF++Y P + +K +L RRNGV
Sbjct: 436 PDGKGRVRLEYHIPARGLIGFQGEFMTLTRGTGLMSHVFDDYKPV-DTTKGELAGRRNGV 494
Query: 1410 LISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIR 1469
LISQ G AVAY+LWKLQDRGR+F++HND VYEGMIIGIHSRDNDL+VNPIK KQLTN+R
Sbjct: 495 LISQDDGAAVAYALWKLQDRGRMFVSHNDPVYEGMIIGIHSRDNDLVVNPIKGKQLTNVR 554
Query: 1470 SSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKK 1521
+SG+DEA++L+ PI+++LEYA+EFI DDELVE+TPK+IRLRKR LKE+ERKK
Sbjct: 555 ASGTDEAVRLVPPIELSLEYAVEFIEDDELVEVTPKSIRLRKRHLKEHERKK 606
|
Source: Herbaspirillum sp. GW103 Species: Herbaspirillum sp. GW103 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|415942722|ref|ZP_11555964.1| GTP-binding protein TypA/BipA [Herbaspirillum frisingense GSF30] gi|407758799|gb|EKF68572.1| GTP-binding protein TypA/BipA [Herbaspirillum frisingense GSF30] | Back alignment and taxonomy information |
|---|
Score = 932 bits (2410), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/592 (73%), Positives = 518/592 (87%), Gaps = 1/592 (0%)
Query: 930 HVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINI 989
HVDHGKTTL+D LLRQSGTFR NQ ++ R+MDSN+IEKERGITI SKNC++EY GT INI
Sbjct: 16 HVDHGKTTLVDQLLRQSGTFRDNQQVDNRVMDSNDIEKERGITILSKNCAVEYKGTHINI 75
Query: 990 IDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDR 1049
+DTPGHADFGGEVER+LSMVD+VLLL+DA EGPMPQTRFVTRKAL LG KPIVV+NKIDR
Sbjct: 76 VDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKALALGLKPIVVLNKIDR 135
Query: 1050 SNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109
AR EW ++ATF+LFDKL ATEEQLDFPVIY S L+GYA+ + +AR G+M PLF+AILK
Sbjct: 136 PGARAEWAINATFELFDKLGATEEQLDFPVIYASGLNGYASLDPEARGGSMEPLFDAILK 195
Query: 1110 YVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKI 1169
YVP KD+ + PLQLQI SLEYSSY+GKIG+GRIL+GR+K QDVV MNGP+DKP KA+I
Sbjct: 196 YVPARKDDPDAPLQLQITSLEYSSYVGKIGVGRILAGRVKGGQDVVWMNGPEDKPTKARI 255
Query: 1170 NQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINF 1229
NQ+ FKGL+RVLV+EAL+GDIVLI GIEEI IGSTIC P PNGLPML +DEPTLT+NF
Sbjct: 256 NQVLTFKGLERVLVDEALAGDIVLINGIEEIGIGSTICSPDAPNGLPMLKVDEPTLTMNF 315
Query: 1230 MVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILI 1289
MVN SPLAGREGKF+TTRQI++RL+ E+K+N+ LRV Q ++DDS YEVSGRGELHLTILI
Sbjct: 316 MVNTSPLAGREGKFVTTRQIRDRLEKELKSNMALRVVQAENDDSTYEVSGRGELHLTILI 375
Query: 1290 ENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIE 1349
ENMRREG+EL+VSRPRV+F+ ++G EPYENL VD+EE +QG +M++L R GDL+N+E
Sbjct: 376 ENMRREGFELAVSRPRVVFRMVDGVREEPYENLTVDVEETHQGGVMEELGRRRGDLQNME 435
Query: 1350 INEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGV 1409
+ K RVRLEY IP+RGLIGFQ EF+TLTRGTGL+SHVF++Y P + +K +L RRNGV
Sbjct: 436 PDGKGRVRLEYHIPARGLIGFQGEFMTLTRGTGLMSHVFDDYKPV-DTTKGELAGRRNGV 494
Query: 1410 LISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIR 1469
LISQ G AVAY+LWKLQDRGR+F++HND VYEGMIIGIHSRDNDL+VNPIK KQLTN+R
Sbjct: 495 LISQDDGAAVAYALWKLQDRGRMFVSHNDPVYEGMIIGIHSRDNDLVVNPIKGKQLTNVR 554
Query: 1470 SSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKK 1521
+SG+DEA++L+ PI+++LEYA+EFI DDELVE+TPK+IRLRKR LKE+ERKK
Sbjct: 555 ASGTDEAVRLVPPIELSLEYAVEFIEDDELVEVTPKSIRLRKRHLKEHERKK 606
|
Source: Herbaspirillum frisingense GSF30 Species: Herbaspirillum frisingense Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|398832207|ref|ZP_10590371.1| GTP-binding protein TypA/BipA [Herbaspirillum sp. YR522] gi|398223744|gb|EJN10079.1| GTP-binding protein TypA/BipA [Herbaspirillum sp. YR522] | Back alignment and taxonomy information |
|---|
Score = 927 bits (2397), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/592 (72%), Positives = 515/592 (86%), Gaps = 1/592 (0%)
Query: 930 HVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINI 989
HVDHGKTTL+D LLRQSGTFR+NQ ++ R+MDSN+IEKERGITI SKNC++EY GT INI
Sbjct: 16 HVDHGKTTLVDQLLRQSGTFRENQQVDNRVMDSNDIEKERGITILSKNCAVEYKGTHINI 75
Query: 990 IDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDR 1049
+DTPGHADFGGEVER+LSMVD+VLLL+DA EGPMPQTRFVTRKAL LG KPIVV+NKIDR
Sbjct: 76 VDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKALALGLKPIVVLNKIDR 135
Query: 1050 SNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109
AR EW ++ATF+LFDKL ATEEQLDFPVIY S L+GYA ++ R+GNM PLF+AILK
Sbjct: 136 PGARAEWAINATFELFDKLGATEEQLDFPVIYASGLNGYAGNSADVREGNMEPLFDAILK 195
Query: 1110 YVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKI 1169
YVP +D+ N PLQLQI SLEYSSY+GKIG+GRIL+GR+K QDVV MNGPDDKP KA+I
Sbjct: 196 YVPAREDDPNAPLQLQITSLEYSSYVGKIGVGRILAGRVKGGQDVVWMNGPDDKPTKARI 255
Query: 1170 NQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINF 1229
NQ+ FKGL+RVLV+EAL+GDIVLI GIEEI IGSTIC PN LPML +DEPTLT+NF
Sbjct: 256 NQVLTFKGLERVLVDEALAGDIVLINGIEEIGIGSTICAVDAPNALPMLKVDEPTLTMNF 315
Query: 1230 MVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILI 1289
MVN SPLAGREGKF+TTRQI++RL+ E+K+N+ LRV Q + DDS YEVSGRGELHLTILI
Sbjct: 316 MVNTSPLAGREGKFVTTRQIRDRLERELKSNMALRVVQKEDDDSTYEVSGRGELHLTILI 375
Query: 1290 ENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIE 1349
ENMRREG+EL+VSRPRV+FK ++G EPYENL VD+EE +QG +M++L R GDL+N+E
Sbjct: 376 ENMRREGFELAVSRPRVVFKMVDGVRQEPYENLTVDVEEGHQGGVMEELGRRRGDLQNME 435
Query: 1350 INEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGV 1409
+ K RVRLEY IP+RGLIGFQ EF+TLTRGTGL+SHVF++Y + +K ++ RRNGV
Sbjct: 436 PDGKGRVRLEYHIPARGLIGFQGEFMTLTRGTGLMSHVFDDYKTI-DTTKGEMAGRRNGV 494
Query: 1410 LISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIR 1469
LISQ G AVAY+LWKLQDRGR+F++HND VYEGMIIGIHSRDNDL+VNPIK KQLTN+R
Sbjct: 495 LISQDDGAAVAYALWKLQDRGRMFVSHNDPVYEGMIIGIHSRDNDLVVNPIKGKQLTNVR 554
Query: 1470 SSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKK 1521
+SG+DEA++L+ PI+++LEYA+EFI DDELVE+TPK+IRLRKR+LKE+ERKK
Sbjct: 555 ASGTDEAVRLVPPIELSLEYAVEFIEDDELVEVTPKSIRLRKRYLKEHERKK 606
|
Source: Herbaspirillum sp. YR522 Species: Herbaspirillum sp. YR522 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|329905070|ref|ZP_08273998.1| GTP-binding protein TypA/BipA [Oxalobacteraceae bacterium IMCC9480] gi|327547742|gb|EGF32518.1| GTP-binding protein TypA/BipA [Oxalobacteraceae bacterium IMCC9480] | Back alignment and taxonomy information |
|---|
Score = 922 bits (2383), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/596 (70%), Positives = 520/596 (87%), Gaps = 2/596 (0%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AIIAHVDHGKTTL+D LLRQSGTFR NQ ++AR+MDSN++EKERGITI SKNC++EY GT
Sbjct: 12 AIIAHVDHGKTTLVDKLLRQSGTFRDNQQVDARVMDSNDLEKERGITILSKNCAVEYEGT 71
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
INI+DTPGHADFGGEVER+LSMVD+VLLL+DA EGPMPQTRFVTRKAL LG KPIVVVN
Sbjct: 72 HINIVDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKALALGLKPIVVVN 131
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
KIDR ARPEW ++ATF+LFDKL ATEEQLDFPV++ SAL+GY++ +S R G+M PLF+
Sbjct: 132 KIDRPGARPEWAINATFELFDKLGATEEQLDFPVVFASALNGYSSLDSTVRDGDMKPLFD 191
Query: 1106 AILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPN 1165
AIL++VP +D+ + PLQLQI SL+YSSY+GKIGIGRI GR++ LQDV+IM+GPD P
Sbjct: 192 AILRHVPAREDDQDGPLQLQISSLDYSSYVGKIGIGRITRGRVRGLQDVIIMDGPDGVPR 251
Query: 1166 KAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTL 1225
KA++NQ+ FKGLDRVLV EA++GDIVLI GI+E+ IG+T+C P P+ LPML +DEPTL
Sbjct: 252 KARVNQVLNFKGLDRVLVEEAVAGDIVLINGIDELGIGTTVCAPDMPDALPMLTVDEPTL 311
Query: 1226 TINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHL 1285
T+NFMVNNSPLAGREGKF+T+RQ++ RLD E+K N+ LRV DD+I+EVSGRGELHL
Sbjct: 312 TMNFMVNNSPLAGREGKFVTSRQLRERLDRELKANVALRVAPTD-DDTIFEVSGRGELHL 370
Query: 1286 TILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDL 1345
TILIENMRREG+EL+VSRPRV+FK ++G +EP+E L VD+EE+NQG +M++L R GDL
Sbjct: 371 TILIENMRREGFELAVSRPRVVFKMVDGVRHEPFELLSVDVEEVNQGGVMEELGRRRGDL 430
Query: 1346 KNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKR 1405
+N+E + K RVRLEYRIP+RGLIGFQ EF+TLTRGTGL+SH+F+EYAP N ++ ++ R
Sbjct: 431 QNMESDGKGRVRLEYRIPARGLIGFQGEFMTLTRGTGLMSHIFDEYAPVDN-TRGEMASR 489
Query: 1406 RNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQL 1465
RNGVL+SQ G AVAY+LWKLQDRGR+F+ HND VYEGMIIGIHSRDNDL+VNPIK KQL
Sbjct: 490 RNGVLVSQDDGAAVAYALWKLQDRGRMFVVHNDPVYEGMIIGIHSRDNDLVVNPIKGKQL 549
Query: 1466 TNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKK 1521
TN+RSSG+DEA++L+ P++++LEYA+EFI+DDELVEITPK+IRLRKR+LKE +RKK
Sbjct: 550 TNVRSSGTDEAVRLVPPVQMSLEYAVEFIDDDELVEITPKSIRLRKRYLKEADRKK 605
|
Source: Oxalobacteraceae bacterium IMCC9480 Species: Oxalobacteraceae bacterium IMCC9480 Genus: Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|237748741|ref|ZP_04579221.1| GTP-binding elongation factor family protein [Oxalobacter formigenes OXCC13] gi|229380103|gb|EEO30194.1| GTP-binding elongation factor family protein [Oxalobacter formigenes OXCC13] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2333), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/596 (69%), Positives = 511/596 (85%), Gaps = 2/596 (0%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AIIAHVDHGKTTL+D LLRQSGTFR+NQ ++ R+MDSN++EKERGITI +KNC++EY GT
Sbjct: 12 AIIAHVDHGKTTLVDQLLRQSGTFRENQAVSERVMDSNDLEKERGITILAKNCAVEYEGT 71
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
INI+DTPGHADFGGEVER+LSMVD+VLLL+DAVEGPMPQTRFVTRKAL LG KPIVV+N
Sbjct: 72 HINIVDTPGHADFGGEVERVLSMVDSVLLLVDAVEGPMPQTRFVTRKALGLGLKPIVVIN 131
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
KIDR ARP+WV++ATFDLFDKL ATEEQLDFPVIY S L+GYA + R G+M PLF+
Sbjct: 132 KIDRPGARPDWVINATFDLFDKLGATEEQLDFPVIYASGLNGYAGLDDSVRSGDMRPLFD 191
Query: 1106 AILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPN 1165
AILKYVPV + + P Q+QI SL+YSSY+GKIG+GR+ GR+K LQDV+I+NGPD P
Sbjct: 192 AILKYVPVRDADPDGPFQMQISSLDYSSYVGKIGVGRVNRGRVKPLQDVIILNGPDSTPI 251
Query: 1166 KAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTL 1225
KA+INQ+ FKGL+R +++EA +GDIVLI GIE I IGSTICDP P LPML +DEPTL
Sbjct: 252 KARINQVLSFKGLERKVIDEASAGDIVLINGIEAIDIGSTICDPEHPEALPMLTVDEPTL 311
Query: 1226 TINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHL 1285
T+NFMVN SP AGREGKF+T+RQ++ RLD E+K+N+ LRV DD+I+EVSGRGELHL
Sbjct: 312 TMNFMVNTSPFAGREGKFVTSRQLRERLDRELKSNVALRVAPTD-DDTIFEVSGRGELHL 370
Query: 1286 TILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDL 1345
TILIENMRREGYEL+VSRPRV++K ++G +EPYE L VD++E NQG +M++L R GDL
Sbjct: 371 TILIENMRREGYELAVSRPRVVYKDIDGVRHEPYEALTVDVDETNQGAVMEELGRRRGDL 430
Query: 1346 KNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKR 1405
++++ + K RVRLEYRIP+RGLIGFQ+EF+TLTRGTGL+SHVF++Y P + SK + G R
Sbjct: 431 QDMQPDSKGRVRLEYRIPARGLIGFQSEFMTLTRGTGLMSHVFDDYYPV-DPSKAEAGGR 489
Query: 1406 RNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQL 1465
RNGVLISQ G AVAY+LWKLQ+RGR+F+NHND VYEGMIIGIHSR+NDL+VNPIK KQL
Sbjct: 490 RNGVLISQDDGAAVAYALWKLQERGRMFVNHNDPVYEGMIIGIHSRENDLVVNPIKGKQL 549
Query: 1466 TNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKK 1521
TNIR+SG+DEA++L+ PI+++LEYA+EFI DDELVEITPK+IRLRKR L + +R++
Sbjct: 550 TNIRASGTDEAVRLVPPIQMSLEYAVEFIEDDELVEITPKSIRLRKRHLSDIDRRR 605
|
Source: Oxalobacter formigenes OXCC13 Species: Oxalobacter formigenes Genus: Oxalobacter Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1527 | ||||||
| UNIPROTKB|Q603F4 | 606 | typA "GTP-binding protein TypA | 0.387 | 0.975 | 0.583 | 5.8e-185 | |
| TIGR_CMR|SO_4408 | 603 | SO_4408 "virulence regulator B | 0.387 | 0.980 | 0.573 | 1.4e-181 | |
| TIGR_CMR|VC_2744 | 609 | VC_2744 "GTP-binding protein T | 0.387 | 0.970 | 0.572 | 3.4e-180 | |
| UNIPROTKB|P32132 | 607 | typA "protein possibly involve | 0.387 | 0.973 | 0.562 | 3e-179 | |
| TIGR_CMR|CBU_0884 | 602 | CBU_0884 "virulence regulator | 0.386 | 0.980 | 0.596 | 9.3e-178 | |
| UNIPROTKB|Q489A8 | 605 | typA "GTP-binding protein TypA | 0.387 | 0.978 | 0.542 | 1.1e-174 | |
| TIGR_CMR|CPS_0606 | 605 | CPS_0606 "GTP-binding protein | 0.387 | 0.978 | 0.542 | 1.1e-174 | |
| UNIPROTKB|Q88AM8 | 606 | typA "GTP-binding protein TypA | 0.389 | 0.981 | 0.543 | 8.9e-173 | |
| UNIPROTKB|Q74FV3 | 598 | typA "Translation-regulating m | 0.386 | 0.986 | 0.522 | 3.4e-164 | |
| TIGR_CMR|GSU_0500 | 598 | GSU_0500 "GTP-binding protein | 0.386 | 0.986 | 0.522 | 3.4e-164 |
| UNIPROTKB|Q603F4 typA "GTP-binding protein TypA" [Methylococcus capsulatus str. Bath (taxid:243233)] | Back alignment and assigned GO terms |
|---|
Score = 1794 (636.6 bits), Expect = 5.8e-185, P = 5.8e-185
Identities = 348/596 (58%), Positives = 454/596 (76%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AIIAHVDHGKTTL+D LL+QSGTF ++ + R+MDSN++EKERGITI +KN +I++
Sbjct: 9 AIIAHVDHGKTTLVDKLLQQSGTFAAHERVGERVMDSNDLEKERGITILAKNTAIKWRDY 68
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
RINI+DTPGHADFGGEVER+LSMVD+VLLL+DAV+GPMPQTRFVT+KA +G PIV++N
Sbjct: 69 RINIVDTPGHADFGGEVERVLSMVDSVLLLVDAVDGPMPQTRFVTQKAFAMGLHPIVLIN 128
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
KIDR AR WV+D TFDLFD+L ATE QLDFPVIY SAL+GYA + +G + PLFE
Sbjct: 129 KIDRPGARAAWVLDQTFDLFDRLGATEAQLDFPVIYCSALNGYAGLSPDISEGTLEPLFE 188
Query: 1106 AILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPN 1165
AI+ +V +++ P Q+Q+ SL+Y+SY+G IGIGRI G +K V ++ D + +
Sbjct: 189 AIVNHVSPPDVDTDGPFQMQVSSLDYNSYVGVIGIGRITRGTVKRNTPVTLIKR-DGRQS 247
Query: 1166 KAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTL 1225
A+I Q+ F GL+R+ EA +GDI+ TGIE + I T+C LP L +DEPT+
Sbjct: 248 AARILQVLAFHGLERIEREEANAGDIIAFTGIEGLEISDTLCAVGFAEQLPPLTVDEPTV 307
Query: 1226 TINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHL 1285
++ F VNNSP AGREGKF+T+RQI++RL+ E+ +N+ LRV D + VSGRGELHL
Sbjct: 308 SMTFQVNNSPFAGREGKFLTSRQIRDRLNRELIHNVALRVEDTADPDK-FTVSGRGELHL 366
Query: 1286 TILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDL 1345
+ILIENMRREGYEL+VSRP VI + ++GE EPYE + +++EE +QG +M+KL R GDL
Sbjct: 367 SILIENMRREGYELAVSRPEVIIREIDGEPCEPYEFVTIEVEETHQGAVMEKLGERKGDL 426
Query: 1346 KNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKR 1405
+N+ + + RVRLEY IPSRGLIGFQ EF+T T GTGL+ HVF+ Y P + +G+R
Sbjct: 427 RNMVPDGQGRVRLEYLIPSRGLIGFQTEFLTTTSGTGLLYHVFDHYGPIKRGA---IGQR 483
Query: 1406 RNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQL 1465
NG LIS +GKA+A+SL+ LQ+RGRLF+ H D VYEGM++G+H+R NDL+VNP K KQL
Sbjct: 484 TNGALISNTTGKALAFSLFNLQERGRLFVEHGDEVYEGMVVGVHTRGNDLVVNPTKAKQL 543
Query: 1466 TNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKK 1521
TNIR++GSDE I L IK TLE AIEFI+DDELVE+TP++IR+RK+ L+E+ERKK
Sbjct: 544 TNIRAAGSDENILLTPAIKFTLEQAIEFIDDDELVEVTPQSIRIRKKLLQEHERKK 599
|
|
| TIGR_CMR|SO_4408 SO_4408 "virulence regulator BipA" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1762 (625.3 bits), Expect = 1.4e-181, P = 1.4e-181
Identities = 342/596 (57%), Positives = 449/596 (75%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AIIAHVDHGKTTL+D LL QSGT R+MDSN++EKERGITI +KN +I++N
Sbjct: 9 AIIAHVDHGKTTLVDKLLSQSGTLATRGEATERVMDSNDLEKERGITILAKNTAIKWNDY 68
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
RINI+DTPGHADFGGEVER+LSMVD+VLLL+DAV+GPMPQTRFVT+KA G KPIVV+N
Sbjct: 69 RINIVDTPGHADFGGEVERVLSMVDSVLLLVDAVDGPMPQTRFVTKKAFAQGLKPIVVIN 128
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
KIDR ARP+WV+D FDLFD L AT+EQLDFP++Y SAL+G+A + +M PLF+
Sbjct: 129 KIDRPGARPDWVIDQVFDLFDNLGATDEQLDFPIVYASALNGFATLDPDVVSEDMTPLFQ 188
Query: 1106 AILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPN 1165
I++ V +++ P Q+QI L+Y+SY+G IG+GRI G IK+ Q V ++ G D K
Sbjct: 189 TIVEKVSSPDADADGPFQMQISQLDYNSYVGVIGVGRINRGSIKTNQQVSVI-GADGKVR 247
Query: 1166 KAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTL 1225
K+ Q+ + GL+R V+ A +GDIV ITG+ E+ I T+C +P L++DEPTL
Sbjct: 248 NGKMGQVLGYMGLERTEVDVANAGDIVAITGLGELKISDTVCAAGNVEAMPPLSVDEPTL 307
Query: 1226 TINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHL 1285
T+ F VN SP AG+EGK++T+R I RL E+ +N+ LRV + D + VSGRGELHL
Sbjct: 308 TMTFQVNTSPFAGKEGKYVTSRNILERLQQELVHNVALRVEETDSPDR-FAVSGRGELHL 366
Query: 1286 TILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDL 1345
+ILIENMRREGYEL+VSRP VI KT++GEL EP+E L VD+EE +QG +++KL R ++
Sbjct: 367 SILIENMRREGYELAVSRPEVILKTIDGELCEPFETLTVDVEEEHQGTVIEKLGIRKAEM 426
Query: 1346 KNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKR 1405
K+++++ K RVR+++ IPSRGLIGFQ EF+T T GTGLI H F+ Y P +K D+G+R
Sbjct: 427 KDMQLDGKGRVRVDFVIPSRGLIGFQTEFLTATSGTGLIYHSFDHYGP--HKGG-DIGQR 483
Query: 1406 RNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQL 1465
NGVLIS +GKA+ ++L+ LQDRGRLFI H VYEG ++GIH+R NDL VN +K KQL
Sbjct: 484 ANGVLISNATGKALTFALFGLQDRGRLFIGHAAEVYEGQVVGIHARSNDLTVNCLKGKQL 543
Query: 1466 TNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKK 1521
TN+R+SG+DEA L +PI +TLE A+EFI+DDELVE+TPK+IR+RK+ L EN+RK+
Sbjct: 544 TNMRASGTDEAQVLTTPITLTLEQALEFIDDDELVEVTPKSIRVRKKHLTENDRKR 599
|
|
| TIGR_CMR|VC_2744 VC_2744 "GTP-binding protein TypA" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 1749 (620.7 bits), Expect = 3.4e-180, P = 3.4e-180
Identities = 341/596 (57%), Positives = 450/596 (75%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AIIAHVDHGKTTL+D LL+QSGT ++ R+MDSN+IEKERGITI +KN +I +N
Sbjct: 13 AIIAHVDHGKTTLVDKLLQQSGTLESRGDVEERVMDSNDIEKERGITILAKNTAINWNDY 72
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
RINI+DTPGHADFGGEVERI+SMVD+VLL++DAV+GPMPQTRFVT+KA G KPIVV+N
Sbjct: 73 RINIVDTPGHADFGGEVERIMSMVDSVLLIVDAVDGPMPQTRFVTQKAFAHGLKPIVVIN 132
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
KIDR ARP+WV+D FDLFD L AT+EQLDF V+Y SAL+G+A NM PLF+
Sbjct: 133 KIDRPGARPDWVMDQVFDLFDNLGATDEQLDFQVVYASALNGWATLVEGETGENMEPLFQ 192
Query: 1106 AILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPN 1165
AI+ V + + + PLQ+QI L+YSSY+G IG+GRI G++K Q V ++ G D K
Sbjct: 193 AIVDNVAAPQVDLDGPLQMQISQLDYSSYVGVIGVGRIKRGKVKPNQQVTVI-GADGKKR 251
Query: 1166 KAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTL 1225
KI + + GL R ++A +GDIV +TG+ E+ I TICD + LP L++DEPT+
Sbjct: 252 NGKIGTVLGYLGLQRSETDQATAGDIVAVTGLGELKISDTICDVNALEALPPLSVDEPTV 311
Query: 1226 TINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHL 1285
T+ F VN SP AG+EGKF+T+R I RL+ E+ +N+ LRV Q + D + VSGRGELHL
Sbjct: 312 TMTFQVNTSPFAGKEGKFVTSRNILERLEKELVHNVALRVEQTEDPDK-FRVSGRGELHL 370
Query: 1286 TILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDL 1345
+ILIENMRREG+EL+VSRP VI K +G+L EP+E + +D++E +QG IM+K+ R G+L
Sbjct: 371 SILIENMRREGFELAVSRPEVILKHEDGQLMEPFETVTIDVQEEHQGGIMEKIGMRKGEL 430
Query: 1346 KNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKR 1405
K++ + K R+R+++ +PSRGLIGFQ EF+TLT G+GL+ H F+ Y P +K +G+R
Sbjct: 431 KDMSPDGKGRIRMDFVMPSRGLIGFQTEFMTLTSGSGLLYHSFDHYGP--HKGGV-IGQR 487
Query: 1406 RNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQL 1465
NGVL+S +GKA+ +L+ LQ+RGR+FI H VYEGM+IGIHSRDNDL VNP+K KQL
Sbjct: 488 VNGVLVSNGTGKALTNALFNLQERGRMFIGHGVEVYEGMVIGIHSRDNDLTVNPLKGKQL 547
Query: 1466 TNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKK 1521
TN+R+SG+D+A L PI ++LE A+EFI+DDELVE+TP +IR+RKRFL EN+RK+
Sbjct: 548 TNVRASGTDDAQVLTPPIIMSLEQALEFIDDDELVEVTPVSIRIRKRFLTENDRKR 603
|
|
| UNIPROTKB|P32132 typA "protein possibly involved in ribosome structure or function" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1740 (617.6 bits), Expect = 3.0e-179, P = 3.0e-179
Identities = 335/596 (56%), Positives = 452/596 (75%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AIIAHVDHGKTTL+D LL+QSGTF R+MDSN++EKERGITI +KN +I++N
Sbjct: 9 AIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDY 68
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
RINI+DTPGHADFGGEVER++SMVD+VLL++DA +GPMPQTRFVT+KA G KPIVV+N
Sbjct: 69 RINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVIN 128
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
K+DR ARP+WVVD FDLF L AT+EQLDFP++Y SAL+G A + + +M PL++
Sbjct: 129 KVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQ 188
Query: 1106 AILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPN 1165
AI+ +VP + + P Q+QI L+Y+SY+G IGIGRI G++K Q V I++ + K
Sbjct: 189 AIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDS-EGKTR 247
Query: 1166 KAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTL 1225
AK+ ++ GL+R+ + A +GDIV ITG+ E+ I T+CD LP L++DEPT+
Sbjct: 248 NAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTV 307
Query: 1226 TINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHL 1285
++ F VN SP G+EGKF+T+RQI +RL+ E+ +N+ LRV + + D+ + VSGRGELHL
Sbjct: 308 SMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADA-FRVSGRGELHL 366
Query: 1286 TILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDL 1345
++LIENMRREG+EL+VSRP+VIF+ ++G EPYEN+ +D+EE +QG +MQ L R GDL
Sbjct: 367 SVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERKGDL 426
Query: 1346 KNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKR 1405
KN+ + K RVRL+Y IPSRGLIGF++EF+T+T GTGL+ F Y + ++G+R
Sbjct: 427 KNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYD---DVRPGEVGQR 483
Query: 1406 RNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQL 1465
+NGVLIS GKAVA++L+ LQDRG+LF+ H VYEG IIGIHSR NDL VN + K+L
Sbjct: 484 QNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKL 543
Query: 1466 TNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKK 1521
TN+R+SG+DEA+ L+ PI++TLE A+EFI+DDELVE+TP +IR+RKR L EN+R++
Sbjct: 544 TNMRASGTDEAVVLVPPIRMTLEQALEFIDDDELVEVTPTSIRIRKRHLTENDRRR 599
|
|
| TIGR_CMR|CBU_0884 CBU_0884 "virulence regulator BipA" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 1726 (612.6 bits), Expect = 9.3e-178, P = 9.3e-178
Identities = 356/597 (59%), Positives = 433/597 (72%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AIIAHVDHGKTTL+D LL+QSGT + R+MDSN +E+ERGITI +KN +I +
Sbjct: 9 AIIAHVDHGKTTLVDQLLQQSGTLNERAAPVERMMDSNILERERGITILAKNTAIRWRNY 68
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
RINI+DTPGHADFGGEVERILSMVD+VLLL+DAVEGPMPQTRFVTRKA G KPIVVVN
Sbjct: 69 RINIVDTPGHADFGGEVERILSMVDSVLLLVDAVEGPMPQTRFVTRKAFSWGLKPIVVVN 128
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
KIDR ARP+WVV+ FDLF L AT+ QLDFPV+Y SAL GYA + +M PLFE
Sbjct: 129 KIDRPGARPDWVVEQVFDLFVSLDATDAQLDFPVVYASALKGYATLDLSHPSTDMTPLFE 188
Query: 1106 AIL-KYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKP 1164
I+ K VP D N P Q+QI SL+YSSY+G IGIGRI G I+ V+I++ + K
Sbjct: 189 TIVSKVVPPQVD-LNGPFQMQISSLDYSSYVGAIGIGRIQRGTIRRNTPVIIIDR-EGKR 246
Query: 1165 NKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPT 1224
++ Q+ F GL RV + A +GDIV +TGIE + I T+CDP + LP L +DEPT
Sbjct: 247 RSGRVLQLLGFLGLQRVDIETAEAGDIVAVTGIENLRISDTLCDPQQVEALPPLTVDEPT 306
Query: 1225 LTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELH 1284
+++ F VNNSP AGREGKF+T+RQIK RL+ E+ N+ LRV D + VSGRGELH
Sbjct: 307 VSMTFQVNNSPFAGREGKFLTSRQIKERLEKELIANVALRVAAGADADK-FIVSGRGELH 365
Query: 1285 LTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGD 1344
L+ILIENMRREGYE SVSRP VI K ++ EP+ENL +DI+E +QG I+Q L R GD
Sbjct: 366 LSILIENMRREGYEFSVSRPEVIKKMVDDIECEPFENLVLDIDEEHQGDIIQNLAKRKGD 425
Query: 1345 LKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGK 1404
LKN+ K RVRL+Y IP+RGLIGF + F+TLT G+G++ HVF+ YAP +S L
Sbjct: 426 LKNMMPGGKGRVRLDYLIPTRGLIGFHSHFLTLTSGSGVMYHVFDHYAPLIEES---LQT 482
Query: 1405 RRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQ 1464
R GVLIS G A AY+LW LQ RG LFI VYEGMI+G HSRDNDL+VN +EKQ
Sbjct: 483 RHRGVLISNSQGVATAYALWNLQSRGNLFIGPQQAVYEGMIVGQHSRDNDLVVNVCREKQ 542
Query: 1465 LTNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKK 1521
LTNIR++GSDE I L PIK +LE A++FI DDELVEITP IRLRK+ LKE+ER++
Sbjct: 543 LTNIRAAGSDENIILTPPIKFSLEQALQFIADDELVEITPAAIRLRKKLLKEHERRR 599
|
|
| UNIPROTKB|Q489A8 typA "GTP-binding protein TypA" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1697 (602.4 bits), Expect = 1.1e-174, P = 1.1e-174
Identities = 324/597 (54%), Positives = 444/597 (74%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AIIAHVDHGKTTL+D LL QSGT + R MDSN+IEKERGITI +KN ++ +NG
Sbjct: 9 AIIAHVDHGKTTLVDKLLEQSGTLDTRGGLEERTMDSNDIEKERGITILAKNTAVNWNGY 68
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
R+NI+DTPGHADFGGEVER++SMVD+VLL++DA EGPMPQTRFVT+KA G KPI+V+N
Sbjct: 69 RVNIVDTPGHADFGGEVERVMSMVDSVLLIVDAQEGPMPQTRFVTKKAFAQGLKPILVIN 128
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
K+D+ +RP+WV+D F+LFD L AT+EQLDF V+Y SA++G+A+ +M PLF+
Sbjct: 129 KVDKPGSRPDWVMDQVFELFDNLGATDEQLDFKVVYASAINGWASLEEGVTGTDMTPLFD 188
Query: 1106 AILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPN 1165
I+K VP + Q+QI L+Y+SYLG IG+GRI G +K Q V I N
Sbjct: 189 TIIKEVPQPIADPEGAFQMQISQLDYNSYLGVIGVGRITRGSVKPNQQVTIQLANGGVHN 248
Query: 1166 KAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTL 1225
AK+ ++ + GL+R+ + E +GDI+ ITG+ E+ I T+C P++ GLP L++DEPT+
Sbjct: 249 -AKVGKVFGYLGLERLDIAEGFAGDIIAITGLGELKISDTVCCPTEVEGLPALSVDEPTI 307
Query: 1226 TINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHL 1285
+ F VN SP G+EGK++T+R IK+RLD E+ +N+ LRV Q + D ++VSGRGELHL
Sbjct: 308 NMTFQVNTSPFCGKEGKYVTSRNIKDRLDKELIHNVALRVEQLEDADK-FKVSGRGELHL 366
Query: 1286 TILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDL 1345
ILIENMRREG+EL+VSRP VI + ++G+L EPYE + +D+EE +QG IM+K+ R +L
Sbjct: 367 GILIENMRREGFELAVSRPEVIIREIDGQLQEPYETVTIDVEEQHQGPIMEKMGVRKAEL 426
Query: 1346 KNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKR 1405
++ + R+R+++ +PSRGLIGFQ EF+TLT G+GLI H F EY P +K ++G+R
Sbjct: 427 TDMAPDGTGRIRMDFIMPSRGLIGFQTEFMTLTSGSGLIYHTFFEYGP--HKGG-EIGQR 483
Query: 1406 RNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQL 1465
+NGV+I +GKA+ +++ LQ RGR+ I H +YEG +IGIHSRDNDL VN +K KQL
Sbjct: 484 KNGVMIGNATGKALTNAIFNLQSRGRMLIGHGVDIYEGQVIGIHSRDNDLTVNALKGKQL 543
Query: 1466 TNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKKK 1522
TN+RSSG+DEA L PI ++LE A+EFI++DELVE+TP++IR+RK+FLKEN+RK++
Sbjct: 544 TNVRSSGTDEAQTLTPPIVMSLEQALEFIDNDELVEVTPESIRIRKKFLKENDRKRE 600
|
|
| TIGR_CMR|CPS_0606 CPS_0606 "GTP-binding protein TypA" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1697 (602.4 bits), Expect = 1.1e-174, P = 1.1e-174
Identities = 324/597 (54%), Positives = 444/597 (74%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AIIAHVDHGKTTL+D LL QSGT + R MDSN+IEKERGITI +KN ++ +NG
Sbjct: 9 AIIAHVDHGKTTLVDKLLEQSGTLDTRGGLEERTMDSNDIEKERGITILAKNTAVNWNGY 68
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
R+NI+DTPGHADFGGEVER++SMVD+VLL++DA EGPMPQTRFVT+KA G KPI+V+N
Sbjct: 69 RVNIVDTPGHADFGGEVERVMSMVDSVLLIVDAQEGPMPQTRFVTKKAFAQGLKPILVIN 128
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
K+D+ +RP+WV+D F+LFD L AT+EQLDF V+Y SA++G+A+ +M PLF+
Sbjct: 129 KVDKPGSRPDWVMDQVFELFDNLGATDEQLDFKVVYASAINGWASLEEGVTGTDMTPLFD 188
Query: 1106 AILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPN 1165
I+K VP + Q+QI L+Y+SYLG IG+GRI G +K Q V I N
Sbjct: 189 TIIKEVPQPIADPEGAFQMQISQLDYNSYLGVIGVGRITRGSVKPNQQVTIQLANGGVHN 248
Query: 1166 KAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTL 1225
AK+ ++ + GL+R+ + E +GDI+ ITG+ E+ I T+C P++ GLP L++DEPT+
Sbjct: 249 -AKVGKVFGYLGLERLDIAEGFAGDIIAITGLGELKISDTVCCPTEVEGLPALSVDEPTI 307
Query: 1226 TINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHL 1285
+ F VN SP G+EGK++T+R IK+RLD E+ +N+ LRV Q + D ++VSGRGELHL
Sbjct: 308 NMTFQVNTSPFCGKEGKYVTSRNIKDRLDKELIHNVALRVEQLEDADK-FKVSGRGELHL 366
Query: 1286 TILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDL 1345
ILIENMRREG+EL+VSRP VI + ++G+L EPYE + +D+EE +QG IM+K+ R +L
Sbjct: 367 GILIENMRREGFELAVSRPEVIIREIDGQLQEPYETVTIDVEEQHQGPIMEKMGVRKAEL 426
Query: 1346 KNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKR 1405
++ + R+R+++ +PSRGLIGFQ EF+TLT G+GLI H F EY P +K ++G+R
Sbjct: 427 TDMAPDGTGRIRMDFIMPSRGLIGFQTEFMTLTSGSGLIYHTFFEYGP--HKGG-EIGQR 483
Query: 1406 RNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQL 1465
+NGV+I +GKA+ +++ LQ RGR+ I H +YEG +IGIHSRDNDL VN +K KQL
Sbjct: 484 KNGVMIGNATGKALTNAIFNLQSRGRMLIGHGVDIYEGQVIGIHSRDNDLTVNALKGKQL 543
Query: 1466 TNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKKK 1522
TN+RSSG+DEA L PI ++LE A+EFI++DELVE+TP++IR+RK+FLKEN+RK++
Sbjct: 544 TNVRSSGTDEAQTLTPPIVMSLEQALEFIDNDELVEVTPESIRIRKKFLKENDRKRE 600
|
|
| UNIPROTKB|Q88AM8 typA "GTP-binding protein TypA" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] | Back alignment and assigned GO terms |
|---|
Score = 1679 (596.1 bits), Expect = 8.9e-173, P = 8.9e-173
Identities = 326/600 (54%), Positives = 439/600 (73%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AIIAHVDHGKTTL+D LLRQSGT + + + R+MDSN+ EKERGITI +KN +I +NG
Sbjct: 9 AIIAHVDHGKTTLVDKLLRQSGTLERGELNDERVMDSNDQEKERGITILAKNTAINWNGY 68
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
INI+DTPGHADFGGEVER++SMVD+VLLL+DA +GPMPQTRFVT+KA + G +PIVV+N
Sbjct: 69 HINIVDTPGHADFGGEVERVMSMVDSVLLLVDAQDGPMPQTRFVTKKAFEAGLRPIVVIN 128
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
K+DR ARP+WV+D FDLFD L ATEEQLDF V+Y SAL+G A + +M PL++
Sbjct: 129 KVDRPGARPDWVLDQIFDLFDNLGATEEQLDFKVVYASALNGIAGLDHTEMAEDMTPLYQ 188
Query: 1106 AILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPN 1165
+I+ VP + + P Q+QI +L+Y+S+LG IG+GRI G++K VV ++ + K
Sbjct: 189 SIVDNVPAPAVDRDGPFQMQISALDYNSFLGIIGVGRIARGKVKPNTQVVAIDA-NGKRR 247
Query: 1166 KAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTL 1225
+I ++ GL RV V EA +GDIV I+G EE+ I T+CDP + L +DEPT+
Sbjct: 248 NGRILKLMGHHGLHRVDVEEAAAGDIVCISGFEELFISDTLCDPQNVEAMKPLTVDEPTV 307
Query: 1226 TINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHL 1285
++ F VN+SP G+EGKF+T+R IK RLD E+ N+ LRV + D ++VSGRGELHL
Sbjct: 308 SMTFQVNDSPFCGKEGKFVTSRNIKERLDKELLYNVALRVEEGDTADK-FKVSGRGELHL 366
Query: 1286 TILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDL 1345
++LIE MRREG+E+ V RP VI + ++G +EP+EN+ +D+ E +QG IM+++ R GDL
Sbjct: 367 SVLIETMRREGFEMGVGRPEVIIRMVDGVKHEPFENVTIDLPEESQGSIMEQIGIRKGDL 426
Query: 1346 KNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKR 1405
N+ + K RVRLEY IP+RGLIGF+NEF+TLT G G+++ +F+ Y KS D+ R
Sbjct: 427 TNMVPDGKGRVRLEYNIPARGLIGFRNEFLTLTSGAGILTSIFDRYDVM--KSG-DMSGR 483
Query: 1406 RNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQL 1465
+NGVL+S +GKA+ YSL LQ RG+LF+ H + VYEG I+GI+SRDNDL VNP K K+L
Sbjct: 484 QNGVLVSVATGKALTYSLETLQARGKLFLGHGEDVYEGQIVGINSRDNDLGVNPTKGKKL 543
Query: 1466 TNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKKKLHK 1525
N+R+SG DE I L+ PI+ TLE A+EF+ +DEL E+TPK+IRLRK+ L E+ER + K
Sbjct: 544 DNMRASGKDETIALVPPIRFTLEQALEFVQEDELCEVTPKSIRLRKKILGESERTRAAKK 603
|
|
| UNIPROTKB|Q74FV3 typA "Translation-regulating membrane GTPase TypA" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1598 (567.6 bits), Expect = 3.4e-164, P = 3.4e-164
Identities = 312/597 (52%), Positives = 437/597 (73%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AIIAHVDHGKTTL+D +L+ +G FR+N+ I R+MDSN++EKERGITI +KN S+ +
Sbjct: 9 AIIAHVDHGKTTLVDAMLKHAGVFRENEAITERVMDSNDLEKERGITILAKNLSVHHGRY 68
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
+INI+DTPGHADFGGEVER+L MVD+VLLL+DA++GPMPQTRFV +K+L LG KPIVV+N
Sbjct: 69 KINIVDTPGHADFGGEVERVLKMVDSVLLLVDALDGPMPQTRFVLKKSLDLGLKPIVVIN 128
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
KIDR +RP+ VVD FDLF +L AT+EQLDFP++YTSA G+A + + +M PLF
Sbjct: 129 KIDRPGSRPDEVVDMVFDLFCELNATDEQLDFPIVYTSAKLGFAKLDLNSDSNSMEPLFA 188
Query: 1106 AILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPN 1165
I V +S P QL + +++Y+ Y+G+I GRI +GR+K+ + V ++ D
Sbjct: 189 VIESNVHPPAGDSKAPFQLLVTNIDYNDYIGRIATGRIFNGRVKAGETVALVRR-DGSIE 247
Query: 1166 KAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTL 1225
+ +I ++ ++GL +V + EA +GDIV + G +++ IG T+ P LP ++IDEPT+
Sbjct: 248 RGRITKLLGYEGLKQVEIPEACTGDIVTVAGFDDVGIGETLAAADNPVALPYVSIDEPTI 307
Query: 1226 TINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHL 1285
++NF+VN+SP AGREGKF+T+R I+ RLD E++ N+ LRV + D+ ++VSGRGELHL
Sbjct: 308 SMNFIVNSSPFAGREGKFVTSRNIRERLDRELRTNVSLRVEDTANADT-FKVSGRGELHL 366
Query: 1286 TILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDL 1345
+ILIENMRREG+E++VS+P VI + ++G EP E L VD+ QG I++K+ R G++
Sbjct: 367 SILIENMRREGFEMAVSKPEVILRVIDGTKMEPMEYLVVDVPSEFQGAIIEKMGPRKGEM 426
Query: 1346 KNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKR 1405
+++ E VRLE+ +P+RGLIG + E +T TRGT +++H F +YAP+ K D+ R
Sbjct: 427 TSLQ-PMGETVRLEFVVPARGLIGLRGELLTETRGTAVMTHTFHDYAPY----KGDIPGR 481
Query: 1406 RNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQL 1465
+NGVLI+ G+ AY+L LQ RG LFI VY GMIIG H++DNDL VNP K K+L
Sbjct: 482 KNGVLIAMELGETTAYALDALQPRGILFIGPGVEVYGGMIIGQHAKDNDLDVNPCKGKKL 541
Query: 1466 TNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKKK 1522
TN+R+SGSD+AI+L P +TLE A+EFI+DDELVE+TP++IRLRK+ L N+RK+K
Sbjct: 542 TNVRASGSDDAIKLTPPRILTLEQALEFIDDDELVEVTPQSIRLRKKELDPNKRKRK 598
|
|
| TIGR_CMR|GSU_0500 GSU_0500 "GTP-binding protein TypA" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1598 (567.6 bits), Expect = 3.4e-164, P = 3.4e-164
Identities = 312/597 (52%), Positives = 437/597 (73%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AIIAHVDHGKTTL+D +L+ +G FR+N+ I R+MDSN++EKERGITI +KN S+ +
Sbjct: 9 AIIAHVDHGKTTLVDAMLKHAGVFRENEAITERVMDSNDLEKERGITILAKNLSVHHGRY 68
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
+INI+DTPGHADFGGEVER+L MVD+VLLL+DA++GPMPQTRFV +K+L LG KPIVV+N
Sbjct: 69 KINIVDTPGHADFGGEVERVLKMVDSVLLLVDALDGPMPQTRFVLKKSLDLGLKPIVVIN 128
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
KIDR +RP+ VVD FDLF +L AT+EQLDFP++YTSA G+A + + +M PLF
Sbjct: 129 KIDRPGSRPDEVVDMVFDLFCELNATDEQLDFPIVYTSAKLGFAKLDLNSDSNSMEPLFA 188
Query: 1106 AILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPN 1165
I V +S P QL + +++Y+ Y+G+I GRI +GR+K+ + V ++ D
Sbjct: 189 VIESNVHPPAGDSKAPFQLLVTNIDYNDYIGRIATGRIFNGRVKAGETVALVRR-DGSIE 247
Query: 1166 KAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTL 1225
+ +I ++ ++GL +V + EA +GDIV + G +++ IG T+ P LP ++IDEPT+
Sbjct: 248 RGRITKLLGYEGLKQVEIPEACTGDIVTVAGFDDVGIGETLAAADNPVALPYVSIDEPTI 307
Query: 1226 TINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHL 1285
++NF+VN+SP AGREGKF+T+R I+ RLD E++ N+ LRV + D+ ++VSGRGELHL
Sbjct: 308 SMNFIVNSSPFAGREGKFVTSRNIRERLDRELRTNVSLRVEDTANADT-FKVSGRGELHL 366
Query: 1286 TILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDL 1345
+ILIENMRREG+E++VS+P VI + ++G EP E L VD+ QG I++K+ R G++
Sbjct: 367 SILIENMRREGFEMAVSKPEVILRVIDGTKMEPMEYLVVDVPSEFQGAIIEKMGPRKGEM 426
Query: 1346 KNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKR 1405
+++ E VRLE+ +P+RGLIG + E +T TRGT +++H F +YAP+ K D+ R
Sbjct: 427 TSLQ-PMGETVRLEFVVPARGLIGLRGELLTETRGTAVMTHTFHDYAPY----KGDIPGR 481
Query: 1406 RNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQL 1465
+NGVLI+ G+ AY+L LQ RG LFI VY GMIIG H++DNDL VNP K K+L
Sbjct: 482 KNGVLIAMELGETTAYALDALQPRGILFIGPGVEVYGGMIIGQHAKDNDLDVNPCKGKKL 541
Query: 1466 TNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKKK 1522
TN+R+SGSD+AI+L P +TLE A+EFI+DDELVE+TP++IRLRK+ L N+RK+K
Sbjct: 542 TNVRASGSDDAIKLTPPRILTLEQALEFIDDDELVEVTPQSIRLRKKELDPNKRKRK 598
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B1XV89 | IF2_POLNS | No assigned EC number | 0.6377 | 0.3510 | 0.5845 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 5.4.99 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1527 | |||
| COG1217 | 603 | COG1217, TypA, Predicted membrane GTPase involved | 0.0 | |
| TIGR01394 | 594 | TIGR01394, TypA_BipA, GTP-binding protein TypA/Bip | 0.0 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 0.0 | |
| PRK10218 | 607 | PRK10218, PRK10218, GTP-binding protein; Provision | 0.0 | |
| TIGR00487 | 587 | TIGR00487, IF-2, translation initiation factor IF- | 0.0 | |
| COG0532 | 509 | COG0532, InfB, Translation initiation factor 2 (IF | 0.0 | |
| CHL00189 | 742 | CHL00189, infB, translation initiation factor 2; P | 1e-145 | |
| cd01891 | 194 | cd01891, TypA_BipA, Tyrosine phosphorylated protei | 1e-112 | |
| PRK01851 | 303 | PRK01851, truB, tRNA pseudouridine synthase B; Pro | 1e-110 | |
| PRK05033 | 312 | PRK05033, truB, tRNA pseudouridine synthase B; Pro | 1e-108 | |
| cd02573 | 213 | cd02573, PseudoU_synth_EcTruB, Pseudouridine synth | 2e-94 | |
| cd01887 | 169 | cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ euk | 1e-88 | |
| TIGR00431 | 209 | TIGR00431, TruB, tRNA pseudouridine(55) synthase | 3e-81 | |
| COG0130 | 271 | COG0130, TruB, Pseudouridine synthase [Translation | 5e-69 | |
| pfam01509 | 149 | pfam01509, TruB_N, TruB family pseudouridylate syn | 7e-69 | |
| PRK00130 | 290 | PRK00130, truB, tRNA pseudouridine synthase B; Pro | 1e-68 | |
| PRK04642 | 300 | PRK04642, truB, tRNA pseudouridine synthase B; Pro | 8e-66 | |
| PRK00020 | 244 | PRK00020, truB, tRNA pseudouridine synthase B; Pro | 4e-63 | |
| pfam00009 | 184 | pfam00009, GTP_EFTU, Elongation factor Tu GTP bind | 3e-62 | |
| PRK01550 | 304 | PRK01550, truB, tRNA pseudouridine synthase B; Pro | 4e-61 | |
| PRK04004 | 586 | PRK04004, PRK04004, translation initiation factor | 1e-60 | |
| PRK00989 | 230 | PRK00989, truB, tRNA pseudouridine synthase B; Pro | 1e-59 | |
| PRK02755 | 295 | PRK02755, truB, tRNA pseudouridine synthase B; Pro | 3e-57 | |
| cd00506 | 210 | cd00506, PseudoU_synth_TruB_like, Pseudouridine sy | 6e-57 | |
| PRK05389 | 305 | PRK05389, truB, tRNA pseudouridine synthase B; Pro | 5e-56 | |
| pfam00009 | 184 | pfam00009, GTP_EFTU, Elongation factor Tu GTP bind | 4e-55 | |
| PRK02484 | 294 | PRK02484, truB, tRNA pseudouridine synthase B; Pro | 4e-55 | |
| TIGR00490 | 720 | TIGR00490, aEF-2, translation elongation factor aE | 7e-51 | |
| PRK14124 | 308 | PRK14124, PRK14124, tRNA pseudouridine synthase B; | 1e-50 | |
| cd00881 | 183 | cd00881, GTP_translation_factor, GTP translation f | 1e-49 | |
| TIGR00491 | 590 | TIGR00491, aIF-2, translation initiation factor aI | 3e-49 | |
| PRK14123 | 305 | PRK14123, PRK14123, tRNA pseudouridine synthase B; | 5e-48 | |
| PRK07560 | 731 | PRK07560, PRK07560, elongation factor EF-2; Review | 4e-47 | |
| PRK04099 | 273 | PRK04099, truB, tRNA pseudouridine synthase B; Pro | 5e-44 | |
| pfam11987 | 109 | pfam11987, IF-2, Translation-initiation factor 2 | 4e-42 | |
| PRK03287 | 298 | PRK03287, truB, tRNA pseudouridine synthase B; Pro | 1e-40 | |
| cd01885 | 218 | cd01885, EF2, Elongation Factor 2 (EF2) in archaea | 3e-40 | |
| cd03702 | 95 | cd03702, IF2_mtIF2_II, This family represents the | 3e-40 | |
| PRK14845 | 1049 | PRK14845, PRK14845, translation initiation factor | 3e-40 | |
| PRK02193 | 279 | PRK02193, truB, tRNA pseudouridine synthase B; Pro | 5e-40 | |
| PRK14122 | 312 | PRK14122, PRK14122, tRNA pseudouridine synthase B; | 5e-40 | |
| cd04168 | 237 | cd04168, TetM_like, Tet(M)-like family includes Te | 5e-37 | |
| COG0481 | 603 | COG0481, LepA, Membrane GTPase LepA [Cell envelope | 5e-37 | |
| PRK04270 | 300 | PRK04270, PRK04270, H/ACA RNA-protein complex comp | 7e-37 | |
| COG0480 | 697 | COG0480, FusA, Translation elongation factors (GTP | 1e-36 | |
| cd01890 | 179 | cd01890, LepA, LepA also known as Elongation Facto | 9e-36 | |
| cd03701 | 95 | cd03701, IF2_IF5B_II, IF2_IF5B_II: This family rep | 2e-35 | |
| PRK05433 | 600 | PRK05433, PRK05433, GTP-binding protein LepA; Prov | 4e-35 | |
| cd00881 | 183 | cd00881, GTP_translation_factor, GTP translation f | 6e-34 | |
| PRK01528 | 292 | PRK01528, truB, tRNA pseudouridine synthase B; Pro | 8e-34 | |
| TIGR01393 | 595 | TIGR01393, lepA, GTP-binding protein LepA | 1e-33 | |
| cd02572 | 182 | cd02572, PseudoU_synth_hDyskerin, Pseudouridine sy | 3e-33 | |
| cd02867 | 312 | cd02867, PseudoU_synth_TruB_4, Pseudouridine synth | 5e-33 | |
| cd01886 | 270 | cd01886, EF-G, Elongation factor G (EF-G) family i | 2e-32 | |
| TIGR00425 | 322 | TIGR00425, CBF5, rRNA pseudouridine synthase, puta | 2e-32 | |
| cd03710 | 79 | cd03710, BipA_TypA_C, BipA_TypA_C: a C-terminal po | 6e-32 | |
| PRK14846 | 345 | PRK14846, truB, tRNA pseudouridine synthase B; Pro | 2e-31 | |
| PRK12740 | 668 | PRK12740, PRK12740, elongation factor G; Reviewed | 8e-31 | |
| PRK13351 | 687 | PRK13351, PRK13351, elongation factor G; Reviewed | 1e-30 | |
| PRK00521 | 120 | PRK00521, rbfA, ribosome-binding factor A; Validat | 2e-30 | |
| pfam02033 | 104 | pfam02033, RBFA, Ribosome-binding factor A | 2e-30 | |
| PTZ00416 | 836 | PTZ00416, PTZ00416, elongation factor 2; Provision | 9e-29 | |
| TIGR00484 | 689 | TIGR00484, EF-G, translation elongation factor EF- | 3e-28 | |
| cd03691 | 86 | cd03691, BipA_TypA_II, BipA_TypA_II: domain II of | 2e-27 | |
| cd04169 | 268 | cd04169, RF3, Release Factor 3 (RF3) protein invol | 1e-26 | |
| COG0858 | 118 | COG0858, RbfA, Ribosome-binding factor A [Translat | 6e-26 | |
| cd03692 | 84 | cd03692, mtIF2_IVc, mtIF2_IVc: this family represe | 7e-26 | |
| cd04167 | 213 | cd04167, Snu114p, Snu114p, a spliceosome protein, | 8e-26 | |
| cd04170 | 268 | cd04170, EF-G_bact, Elongation factor G (EF-G) fam | 3e-25 | |
| PLN00116 | 843 | PLN00116, PLN00116, translation elongation factor | 5e-25 | |
| PRK12739 | 691 | PRK12739, PRK12739, elongation factor G; Reviewed | 8e-25 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 1e-24 | |
| PRK00007 | 693 | PRK00007, PRK00007, elongation factor G; Reviewed | 2e-24 | |
| COG5256 | 428 | COG5256, TEF1, Translation elongation factor EF-1a | 3e-24 | |
| cd04171 | 170 | cd04171, SelB, SelB, the dedicated elongation fact | 9e-24 | |
| COG4108 | 528 | COG4108, PrfC, Peptide chain release factor RF-3 [ | 3e-23 | |
| PLN03127 | 447 | PLN03127, PLN03127, Elongation factor Tu; Provisio | 1e-22 | |
| PRK10512 | 614 | PRK10512, PRK10512, selenocysteinyl-tRNA-specific | 8e-22 | |
| PRK00741 | 526 | PRK00741, prfC, peptide chain release factor 3; Pr | 1e-21 | |
| TIGR00475 | 581 | TIGR00475, selB, selenocysteine-specific elongatio | 2e-21 | |
| TIGR00082 | 114 | TIGR00082, rbfA, ribosome-binding factor A | 3e-21 | |
| TIGR00483 | 426 | TIGR00483, EF-1_alpha, translation elongation fact | 4e-20 | |
| pfam00679 | 89 | pfam00679, EFG_C, Elongation factor G C-terminus | 7e-20 | |
| COG0480 | 697 | COG0480, FusA, Translation elongation factors (GTP | 1e-19 | |
| TIGR00485 | 394 | TIGR00485, EF-Tu, translation elongation factor TU | 3e-19 | |
| PRK12317 | 425 | PRK12317, PRK12317, elongation factor 1-alpha; Rev | 6e-19 | |
| cd01891 | 194 | cd01891, TypA_BipA, Tyrosine phosphorylated protei | 1e-18 | |
| COG0050 | 394 | COG0050, TufB, GTPases - translation elongation fa | 3e-18 | |
| cd01887 | 169 | cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ euk | 5e-18 | |
| PRK12736 | 394 | PRK12736, PRK12736, elongation factor Tu; Reviewed | 6e-18 | |
| TIGR00503 | 527 | TIGR00503, prfC, peptide chain release factor 3 | 6e-18 | |
| cd01514 | 79 | cd01514, Elongation_Factor_C, Elongation factor G | 1e-17 | |
| cd01883 | 219 | cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1 | 1e-17 | |
| PRK12740 | 668 | PRK12740, PRK12740, elongation factor G; Reviewed | 2e-17 | |
| COG3276 | 447 | COG3276, SelB, Selenocysteine-specific translation | 2e-17 | |
| COG0480 | 697 | COG0480, FusA, Translation elongation factors (GTP | 3e-17 | |
| PRK13351 | 687 | PRK13351, PRK13351, elongation factor G; Reviewed | 1e-16 | |
| cd04171 | 170 | cd04171, SelB, SelB, the dedicated elongation fact | 1e-16 | |
| COG1217 | 603 | COG1217, TypA, Predicted membrane GTPase involved | 2e-16 | |
| PRK12317 | 425 | PRK12317, PRK12317, elongation factor 1-alpha; Rev | 2e-16 | |
| cd01889 | 192 | cd01889, SelB_euk, SelB, the dedicated elongation | 2e-16 | |
| TIGR01394 | 594 | TIGR01394, TypA_BipA, GTP-binding protein TypA/Bip | 3e-16 | |
| COG0050 | 394 | COG0050, TufB, GTPases - translation elongation fa | 4e-16 | |
| cd01884 | 195 | cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-b | 8e-16 | |
| COG2895 | 431 | COG2895, CysN, GTPases - Sulfate adenylate transfe | 9e-16 | |
| TIGR01393 | 595 | TIGR01393, lepA, GTP-binding protein LepA | 1e-15 | |
| CHL00071 | 409 | CHL00071, tufA, elongation factor Tu | 1e-15 | |
| COG5256 | 428 | COG5256, TEF1, Translation elongation factor EF-1a | 2e-15 | |
| PRK12736 | 394 | PRK12736, PRK12736, elongation factor Tu; Reviewed | 3e-15 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 3e-15 | |
| TIGR00485 | 394 | TIGR00485, EF-Tu, translation elongation factor TU | 6e-15 | |
| PLN03126 | 478 | PLN03126, PLN03126, Elongation factor Tu; Provisio | 8e-15 | |
| COG0481 | 603 | COG0481, LepA, Membrane GTPase LepA [Cell envelope | 2e-14 | |
| PRK00049 | 396 | PRK00049, PRK00049, elongation factor Tu; Reviewed | 4e-14 | |
| TIGR03680 | 406 | TIGR03680, eif2g_arch, translation initiation fact | 5e-14 | |
| cd01890 | 179 | cd01890, LepA, LepA also known as Elongation Facto | 6e-14 | |
| cd04168 | 237 | cd04168, TetM_like, Tet(M)-like family includes Te | 1e-13 | |
| PRK12735 | 396 | PRK12735, PRK12735, elongation factor Tu; Reviewed | 1e-13 | |
| PRK12735 | 396 | PRK12735, PRK12735, elongation factor Tu; Reviewed | 1e-13 | |
| COG5257 | 415 | COG5257, GCD11, Translation initiation factor 2, g | 1e-13 | |
| PRK12740 | 668 | PRK12740, PRK12740, elongation factor G; Reviewed | 2e-13 | |
| cd00880 | 161 | cd00880, Era_like, E | 2e-13 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 3e-13 | |
| PLN03127 | 447 | PLN03127, PLN03127, Elongation factor Tu; Provisio | 3e-13 | |
| cd04167 | 213 | cd04167, Snu114p, Snu114p, a spliceosome protein, | 4e-13 | |
| cd01883 | 219 | cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1 | 4e-13 | |
| PRK13351 | 687 | PRK13351, PRK13351, elongation factor G; Reviewed | 5e-13 | |
| cd01885 | 218 | cd01885, EF2, Elongation Factor 2 (EF2) in archaea | 6e-13 | |
| TIGR00475 | 581 | TIGR00475, selB, selenocysteine-specific elongatio | 6e-13 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 7e-13 | |
| PRK13818 | 121 | PRK13818, PRK13818, ribosome-binding factor A; Pro | 9e-13 | |
| cd04166 | 209 | cd04166, CysN_ATPS, CysN, together with protein Cy | 2e-12 | |
| PRK13815 | 122 | PRK13815, PRK13815, ribosome-binding factor A; Pro | 2e-12 | |
| cd01884 | 195 | cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-b | 3e-12 | |
| cd01888 | 197 | cd01888, eIF2_gamma, Gamma subunit of initiation f | 3e-12 | |
| TIGR00483 | 426 | TIGR00483, EF-1_alpha, translation elongation fact | 5e-12 | |
| CHL00071 | 409 | CHL00071, tufA, elongation factor Tu | 5e-12 | |
| PRK13816 | 131 | PRK13816, PRK13816, ribosome-binding factor A; Pro | 6e-12 | |
| PRK00049 | 396 | PRK00049, PRK00049, elongation factor Tu; Reviewed | 8e-12 | |
| TIGR02034 | 406 | TIGR02034, CysN, sulfate adenylyltransferase, larg | 9e-12 | |
| PRK04000 | 411 | PRK04000, PRK04000, translation initiation factor | 3e-11 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 5e-11 | |
| COG0532 | 509 | COG0532, InfB, Translation initiation factor 2 (IF | 7e-11 | |
| PLN03126 | 478 | PLN03126, PLN03126, Elongation factor Tu; Provisio | 7e-11 | |
| TIGR00487 | 587 | TIGR00487, IF-2, translation initiation factor IF- | 9e-11 | |
| PRK10218 | 607 | PRK10218, PRK10218, GTP-binding protein; Provision | 1e-10 | |
| PRK05433 | 600 | PRK05433, PRK05433, GTP-binding protein LepA; Prov | 2e-10 | |
| PLN00043 | 447 | PLN00043, PLN00043, elongation factor 1-alpha; Pro | 2e-10 | |
| PRK05124 | 474 | PRK05124, cysN, sulfate adenylyltransferase subuni | 2e-10 | |
| COG5257 | 415 | COG5257, GCD11, Translation initiation factor 2, g | 5e-10 | |
| PRK07560 | 731 | PRK07560, PRK07560, elongation factor EF-2; Review | 8e-10 | |
| PTZ00141 | 446 | PTZ00141, PTZ00141, elongation factor 1- alpha; Pr | 1e-09 | |
| TIGR00490 | 720 | TIGR00490, aEF-2, translation elongation factor aE | 2e-09 | |
| TIGR00484 | 689 | TIGR00484, EF-G, translation elongation factor EF- | 2e-09 | |
| COG3276 | 447 | COG3276, SelB, Selenocysteine-specific translation | 2e-09 | |
| cd04166 | 209 | cd04166, CysN_ATPS, CysN, together with protein Cy | 2e-09 | |
| cd01342 | 83 | cd01342, Translation_Factor_II_like, Translation_F | 2e-09 | |
| PRK05506 | 632 | PRK05506, PRK05506, bifunctional sulfate adenylylt | 3e-09 | |
| COG5258 | 527 | COG5258, GTPBP1, GTPase [General function predicti | 3e-09 | |
| PRK13817 | 119 | PRK13817, PRK13817, ribosome-binding factor A; Pro | 4e-09 | |
| CHL00189 | 742 | CHL00189, infB, translation initiation factor 2; P | 5e-09 | |
| TIGR03680 | 406 | TIGR03680, eif2g_arch, translation initiation fact | 5e-09 | |
| cd04170 | 268 | cd04170, EF-G_bact, Elongation factor G (EF-G) fam | 6e-09 | |
| PRK05124 | 474 | PRK05124, cysN, sulfate adenylyltransferase subuni | 8e-09 | |
| TIGR00491 | 590 | TIGR00491, aIF-2, translation initiation factor aI | 1e-08 | |
| COG2895 | 431 | COG2895, CysN, GTPases - Sulfate adenylate transfe | 2e-08 | |
| cd03700 | 93 | cd03700, eEF2_snRNP_like_II, EF2_snRNP_like_II: th | 2e-08 | |
| PRK04004 | 586 | PRK04004, PRK04004, translation initiation factor | 3e-08 | |
| cd01889 | 192 | cd01889, SelB_euk, SelB, the dedicated elongation | 3e-08 | |
| TIGR02034 | 406 | TIGR02034, CysN, sulfate adenylyltransferase, larg | 3e-08 | |
| cd01342 | 83 | cd01342, Translation_Factor_II_like, Translation_F | 3e-08 | |
| PRK00089 | 292 | PRK00089, era, GTPase Era; Reviewed | 3e-08 | |
| cd01888 | 197 | cd01888, eIF2_gamma, Gamma subunit of initiation f | 4e-08 | |
| pfam03144 | 70 | pfam03144, GTP_EFTU_D2, Elongation factor Tu domai | 5e-08 | |
| cd04088 | 83 | cd04088, EFG_mtEFG_II, EFG_mtEFG_II: this subfamil | 6e-08 | |
| TIGR00484 | 689 | TIGR00484, EF-G, translation elongation factor EF- | 7e-08 | |
| TIGR03918 | 391 | TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster | 7e-08 | |
| cd02868 | 226 | cd02868, PseudoU_synth_hTruB2_like, Pseudouridine | 1e-07 | |
| cd04163 | 168 | cd04163, Era, E | 1e-07 | |
| PRK10512 | 614 | PRK10512, PRK10512, selenocysteinyl-tRNA-specific | 2e-07 | |
| PRK04000 | 411 | PRK04000, PRK04000, translation initiation factor | 2e-07 | |
| pfam04760 | 52 | pfam04760, IF2_N, Translation initiation factor IF | 3e-07 | |
| cd01342 | 83 | cd01342, Translation_Factor_II_like, Translation_F | 4e-07 | |
| cd01895 | 174 | cd01895, EngA2, EngA2 GTPase contains the second d | 4e-07 | |
| PRK05506 | 632 | PRK05506, PRK05506, bifunctional sulfate adenylylt | 9e-07 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 1e-06 | |
| cd01886 | 270 | cd01886, EF-G, Elongation factor G (EF-G) family i | 2e-06 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 2e-06 | |
| PTZ00141 | 446 | PTZ00141, PTZ00141, elongation factor 1- alpha; Pr | 3e-06 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 3e-06 | |
| PTZ00327 | 460 | PTZ00327, PTZ00327, eukaryotic translation initiat | 4e-06 | |
| PRK00089 | 292 | PRK00089, era, GTPase Era; Reviewed | 5e-06 | |
| cd01895 | 174 | cd01895, EngA2, EngA2 GTPase contains the second d | 5e-06 | |
| cd01894 | 157 | cd01894, EngA1, EngA1 GTPase contains the first do | 5e-06 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 8e-06 | |
| cd04169 | 268 | cd04169, RF3, Release Factor 3 (RF3) protein invol | 1e-05 | |
| COG1159 | 298 | COG1159, Era, GTPase [General function prediction | 2e-05 | |
| cd01859 | 157 | cd01859, MJ1464, An uncharacterized, circularly pe | 2e-05 | |
| PRK09518 | 712 | PRK09518, PRK09518, bifunctional cytidylate kinase | 2e-05 | |
| TIGR03918 | 391 | TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster | 3e-05 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 3e-05 | |
| cd01894 | 157 | cd01894, EngA1, EngA1 GTPase contains the first do | 3e-05 | |
| cd09912 | 180 | cd09912, DLP_2, Dynamin-like protein including dyn | 3e-05 | |
| PRK05291 | 449 | PRK05291, trmE, tRNA modification GTPase TrmE; Rev | 3e-05 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 3e-05 | |
| COG2262 | 411 | COG2262, HflX, GTPases [General function predictio | 3e-05 | |
| cd01878 | 204 | cd01878, HflX, HflX GTPase family | 3e-05 | |
| PRK00093 | 435 | PRK00093, PRK00093, GTP-binding protein Der; Revie | 4e-05 | |
| cd04164 | 159 | cd04164, trmE, trmE is a tRNA modification GTPase | 4e-05 | |
| cd04163 | 168 | cd04163, Era, E | 5e-05 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 5e-05 | |
| PRK00093 | 435 | PRK00093, PRK00093, GTP-binding protein Der; Revie | 5e-05 | |
| PRK12739 | 691 | PRK12739, PRK12739, elongation factor G; Reviewed | 6e-05 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 6e-05 | |
| COG4108 | 528 | COG4108, PrfC, Peptide chain release factor RF-3 [ | 8e-05 | |
| cd03711 | 78 | cd03711, Tet_C, Tet_C: C-terminus of ribosomal pro | 9e-05 | |
| PTZ00416 | 836 | PTZ00416, PTZ00416, elongation factor 2; Provision | 1e-04 | |
| TIGR00503 | 527 | TIGR00503, prfC, peptide chain release factor 3 | 1e-04 | |
| PRK09518 | 712 | PRK09518, PRK09518, bifunctional cytidylate kinase | 2e-04 | |
| cd04165 | 224 | cd04165, GTPBP1_like, GTP binding protein 1 (GTPBP | 2e-04 | |
| COG0486 | 454 | COG0486, ThdF, Predicted GTPase [General function | 2e-04 | |
| PRK12739 | 691 | PRK12739, PRK12739, elongation factor G; Reviewed | 3e-04 | |
| COG1159 | 298 | COG1159, Era, GTPase [General function prediction | 3e-04 | |
| cd01876 | 170 | cd01876, YihA_EngB, YihA (EngB) GTPase family | 3e-04 | |
| cd04139 | 163 | cd04139, RalA_RalB, Ral (Ras-like) family containi | 4e-04 | |
| cd03690 | 85 | cd03690, Tet_II, Tet_II: This subfamily represents | 4e-04 | |
| PRK00007 | 693 | PRK00007, PRK00007, elongation factor G; Reviewed | 5e-04 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 7e-04 | |
| PRK00093 | 435 | PRK00093, PRK00093, GTP-binding protein Der; Revie | 7e-04 | |
| cd00876 | 160 | cd00876, Ras, Rat sarcoma (Ras) family of small gu | 0.001 | |
| COG0370 | 653 | COG0370, FeoB, Fe2+ transport system protein B [In | 0.001 | |
| COG0218 | 200 | COG0218, COG0218, Predicted GTPase [General functi | 0.001 | |
| cd00880 | 161 | cd00880, Era_like, E | 0.002 | |
| PRK00093 | 435 | PRK00093, PRK00093, GTP-binding protein Der; Revie | 0.002 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 0.002 | |
| cd01879 | 159 | cd01879, FeoB, Ferrous iron transport protein B (F | 0.002 | |
| cd04147 | 197 | cd04147, Ras_dva, Ras - dorsal-ventral anterior lo | 0.002 | |
| PRK03003 | 472 | PRK03003, PRK03003, GTP-binding protein Der; Revie | 0.002 | |
| PRK00007 | 693 | PRK00007, PRK00007, elongation factor G; Reviewed | 0.003 | |
| pfam03144 | 70 | pfam03144, GTP_EFTU_D2, Elongation factor Tu domai | 0.003 | |
| cd04090 | 94 | cd04090, eEF2_II_snRNP, Loc2 eEF2_C_snRNP, cd01514 | 0.003 | |
| PRK03003 | 472 | PRK03003, PRK03003, GTP-binding protein Der; Revie | 0.004 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 0.004 |
| >gnl|CDD|224138 COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 966 bits (2499), Expect = 0.0
Identities = 352/596 (59%), Positives = 463/596 (77%), Gaps = 6/596 (1%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AIIAHVDHGKTTL+D LL+QSGTFR+ + + R+MDSN++EKERGITI +KN ++ YNGT
Sbjct: 9 AIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGT 68
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
RINI+DTPGHADFGGEVER+LSMVD VLLL+DA EGPMPQTRFV +KAL LG KPIVV+N
Sbjct: 69 RINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVIN 128
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
KIDR +ARP+ VVD FDLF +L AT+EQLDFP++Y SA +G A+ + + +M PLFE
Sbjct: 129 KIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFE 188
Query: 1106 AILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPN 1165
IL +VP K + + PLQ+Q+ L+Y+SY+G+IGIGRI G +K Q V ++ D
Sbjct: 189 TILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKS-DGTTE 247
Query: 1166 KAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTL 1225
+I ++ F GL+R+ + EA +GDIV I G+E+I IG TICDP P LP L++DEPTL
Sbjct: 248 NGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTICDPDNPEALPALSVDEPTL 307
Query: 1226 TINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHL 1285
++ F VN+SP AG+EGKF+T+RQI++RL+ E++ N+ LRV + + D+ +EVSGRGELHL
Sbjct: 308 SMTFSVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDA-FEVSGRGELHL 366
Query: 1286 TILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDL 1345
+ILIENMRREG+EL VSRP VI K ++G EP+E + +D+ E +QG +++KL R G++
Sbjct: 367 SILIENMRREGFELQVSRPEVIIKEIDGVKCEPFEEVTIDVPEEHQGAVIEKLGERKGEM 426
Query: 1346 KNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKR 1405
K++ + K RVRLE+ IP+RGLIGF+ EF+T+TRGTG+++H F+ Y P K ++G R
Sbjct: 427 KDMAPDGKGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPV----KGEIGGR 482
Query: 1406 RNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQL 1465
NGVLIS +GKAVAY+L+ LQDRG+LFI VYEGMIIG HSRDNDL VN +K K+L
Sbjct: 483 HNGVLISNETGKAVAYALFNLQDRGKLFIEPGTKVYEGMIIGEHSRDNDLTVNVLKGKKL 542
Query: 1466 TNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKK 1521
TN+R+SG DEA+ L PI++TLE A+EFI DDELVE+TP++IRLRK+ L ENERK+
Sbjct: 543 TNMRASGKDEAVTLTPPIRMTLERALEFIADDELVEVTPESIRLRKKILNENERKR 598
|
Length = 603 |
| >gnl|CDD|233394 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Score = 901 bits (2330), Expect = 0.0
Identities = 337/596 (56%), Positives = 451/596 (75%), Gaps = 6/596 (1%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AIIAHVDHGKTTL+D LL+QSGTFR N+ + R+MDSN++E+ERGITI +KN +I YNGT
Sbjct: 5 AIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGT 64
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
+INI+DTPGHADFGGEVER+L MVD VLLL+DA EGPMPQTRFV +KAL+LG KPIVV+N
Sbjct: 65 KINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVIN 124
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
KIDR +ARP+ VVD FDLF +L A +EQLDFP++Y S G+A+ + NM PLF+
Sbjct: 125 KIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFD 184
Query: 1106 AILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPN 1165
AI+++VP K + + PLQ+ + +L+Y YLG+I IGR+ G +K Q V +M D
Sbjct: 185 AIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMK-RDGTIE 243
Query: 1166 KAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTL 1225
+I+++ F+GL+RV ++EA +GDIV + G+E+I IG TI DP P LP + +DEPTL
Sbjct: 244 NGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEVPEALPTITVDEPTL 303
Query: 1226 TINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHL 1285
++ F VN+SPLAG+EGK +T+R I++RL E++ N+ LRV + D +EVSGRGELHL
Sbjct: 304 SMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADK-FEVSGRGELHL 362
Query: 1286 TILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDL 1345
+ILIE MRREG+EL V RP+VI+K ++G+ EP E L +D+ E + G +++KL R G++
Sbjct: 363 SILIETMRREGFELQVGRPQVIYKEIDGKKLEPIEELTIDVPEEHVGAVIEKLGKRKGEM 422
Query: 1346 KNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKR 1405
++E + R RLE++IPSRGLIGF+ EF+T TRGTG+++HVF+EY P+ K ++ R
Sbjct: 423 VDMEPSGNGRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPW----KGEIETR 478
Query: 1406 RNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQL 1465
RNG L+S G A AY+LW LQ+RG +F++ VYEGMIIG HSR+NDL VNP K K+L
Sbjct: 479 RNGSLVSMEDGTATAYALWNLQERGVMFVSPGTEVYEGMIIGEHSRENDLDVNPCKAKKL 538
Query: 1466 TNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKK 1521
TN+RSSG DEA++L P K++LE A+E+I DDELVE+TPK+IRLRKR L NERK+
Sbjct: 539 TNVRSSGKDEAVKLTPPRKLSLEQALEYIEDDELVEVTPKSIRLRKRVLDPNERKR 594
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown [Regulatory functions, Other, Cellular processes, Adaptations to atypical conditions, Protein synthesis, Translation factors]. Length = 594 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 900 bits (2329), Expect = 0.0
Identities = 319/539 (59%), Positives = 412/539 (76%), Gaps = 10/539 (1%)
Query: 1 MSVKSSVVIKNLMKLGQMVTINQVLDQETAMILVEEMGHVAHASKLNDPESFLLNEYNKN 60
M+VK++ VIK L KLG M TINQ LDQETA +L EE GH L + +
Sbjct: 191 MAVKAAEVIKKLFKLGVMATINQSLDQETAELLAEEFGHEVKLVSLLEDDD--------- 241
Query: 61 ITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF 120
+ + R P+VTIMGHVDHGKTSLLD IRKTNV EAGGITQHIGAY V TN G ITF
Sbjct: 242 -EEDLVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITF 300
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK 180
LDTPGHEAFTAMRARGA+VTDIVVLVVAADDGVMPQT EAI HAK +GVP+IVAINKIDK
Sbjct: 301 LDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDK 360
Query: 181 LDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVT 240
N DR+KQ+L ++PEE+GG + F+ +SAKTG GI++LLE I LQAE+LELKA
Sbjct: 361 PGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQAEVLELKANPD 420
Query: 241 TPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGP 300
PA+G +IE++LDKG+GPVATVL+Q+GTL+ DIVVAG +YGR+R+M+++NGK + EAGP
Sbjct: 421 RPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGTTYGRVRAMVDDNGKRVKEAGP 480
Query: 301 SIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDIN 360
S PVEI GL+ VP +G+E V+ +EKKAREI +RQ K R+ KL++Q+ EN+F +
Sbjct: 481 STPVEILGLSGVPQAGDEFVVVEDEKKAREIAEYRQEKAREKKLARQQRVSLENLFEQMK 540
Query: 361 KEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAI 420
+ +VK L +IIK DV GS E L +SL+ LSTD+VK+ +IH+ VG I ESD+ LA AS AI
Sbjct: 541 EGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNIIHSGVGAITESDVTLAAASNAI 600
Query: 421 IIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGLAEIRQ 480
IIGFNVR DA RKLA+ ++IRY++IIY++I ++K+ ++ ++ E +E ++G AE+R+
Sbjct: 601 IIGFNVRPDAKARKLAEQEGVDIRYYSIIYDLIDDVKAAMSGMLEPEYEEEIIGQAEVRE 660
Query: 481 VILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFEC 539
V V+KV IAGC + EG I+R++K+R+LR+ +I+ GEL+SLKRFKD+VKEV+AG+EC
Sbjct: 661 VFKVSKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYEC 719
|
Length = 746 |
| >gnl|CDD|104396 PRK10218, PRK10218, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 685 bits (1768), Expect = 0.0
Identities = 335/598 (56%), Positives = 452/598 (75%), Gaps = 5/598 (0%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AIIAHVDHGKTTL+D LL+QSGTF R+MDSN++EKERGITI +KN +I++N
Sbjct: 9 AIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDY 68
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
RINI+DTPGHADFGGEVER++SMVD+VLL++DA +GPMPQTRFVT+KA G KPIVV+N
Sbjct: 69 RINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVIN 128
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
K+DR ARP+WVVD FDLF L AT+EQLDFP++Y SAL+G A + + +M PL++
Sbjct: 129 KVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQ 188
Query: 1106 AILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPN 1165
AI+ +VP + + P Q+QI L+Y+SY+G IGIGRI G++K Q V I++ + K
Sbjct: 189 AIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDS-EGKTR 247
Query: 1166 KAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTL 1225
AK+ ++ GL+R+ + A +GDIV ITG+ E+ I T+CD LP L++DEPT+
Sbjct: 248 NAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTV 307
Query: 1226 TINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHL 1285
++ F VN SP G+EGKF+T+RQI +RL+ E+ +N+ LRV + + D+ + VSGRGELHL
Sbjct: 308 SMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADA-FRVSGRGELHL 366
Query: 1286 TILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDL 1345
++LIENMRREG+EL+VSRP+VIF+ ++G EPYEN+ +D+EE +QG +MQ L R GDL
Sbjct: 367 SVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERKGDL 426
Query: 1346 KNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKR 1405
KN+ + K RVRL+Y IPSRGLIGF++EF+T+T GTGL+ F Y + ++G+R
Sbjct: 427 KNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYD---DVRPGEVGQR 483
Query: 1406 RNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQL 1465
+NGVLIS GKAVA++L+ LQDRG+LF+ H VYEG IIGIHSR NDL VN + K+L
Sbjct: 484 QNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKL 543
Query: 1466 TNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKKKL 1523
TN+R+SG+DEA+ L+ PI++TLE A+EFI+DDELVE+TP +IR+RKR L EN+R++
Sbjct: 544 TNMRASGTDEAVVLVPPIRMTLEQALEFIDDDELVEVTPTSIRIRKRHLTENDRRRAN 601
|
Length = 607 |
| >gnl|CDD|232995 TIGR00487, IF-2, translation initiation factor IF-2 | Back alignment and domain information |
|---|
Score = 683 bits (1763), Expect = 0.0
Identities = 300/540 (55%), Positives = 398/540 (73%), Gaps = 3/540 (0%)
Query: 1 MSVKSSVVIKNLMKLGQMVTINQVLDQETAMILVEEMGHVAHASKLNDPESFLLNEYNKN 60
M++K S +IK LM LG MVTINQVLD+ETA ++ EE G E E +++
Sbjct: 21 MNIKVSDIIKKLMLLGVMVTINQVLDKETAELVAEEFGV--KVEVRVTLEETEAEEQDED 78
Query: 61 ITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGS-IT 119
+ R P+VTIMGHVDHGKTSLLD IRKT V EAGGITQHIGAY+V G IT
Sbjct: 79 SGDLLVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMIT 138
Query: 120 FLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKID 179
FLDTPGHEAFT+MRARGAKVTDIVVLVVAADDGVMPQT EAI+HAK + VP+IVAINKID
Sbjct: 139 FLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKID 198
Query: 180 KLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPV 239
K + N DR+KQ+L ++PE++GG + F+ +SA TG GI++LL+ I LQ+E+ ELKA
Sbjct: 199 KPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILLQSEVEELKANP 258
Query: 240 TTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAG 299
A GV+IE++LDKG+GPVATVL+QSGTLR DIVV GA+YGR+R+M++ENGK++ EAG
Sbjct: 259 NGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVGAAYGRVRAMIDENGKSVKEAG 318
Query: 300 PSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDI 359
PS PVEI GL+ VP +G+E V +EK AR + R GK R LS+ +N+F I
Sbjct: 319 PSKPVEILGLSDVPAAGDEFIVFKDEKDARLVAEKRAGKLRQKALSRSVKVTLDNLFEQI 378
Query: 360 NKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKA 419
+ ++K L II+K DV GS E + SL+ L+ ++VK++VIH+ VG I E+DI+LA AS A
Sbjct: 379 KEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVGGITETDISLASASNA 438
Query: 420 IIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGLAEIR 479
IIIGFNVR DA+ + +A+ N++IRY+++IY +I EI++ + ++ E +E ++G AE+R
Sbjct: 439 IIIGFNVRPDATAKNVAEAENVDIRYYSVIYKLIDEIRAAMKGMLDPEYEEEIIGQAEVR 498
Query: 480 QVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFEC 539
QV V K+ IAGCY+ EG+I+R + +R++R+ +I+ GE+DSLKRFKD+VKEV G+EC
Sbjct: 499 QVFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYEC 558
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU [Protein synthesis, Translation factors]. Length = 587 |
| >gnl|CDD|223606 COG0532, InfB, Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 652 bits (1685), Expect = 0.0
Identities = 263/476 (55%), Positives = 350/476 (73%), Gaps = 4/476 (0%)
Query: 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGS---ITFLDTP 124
R P+VTIMGHVDHGKT+LLD IRKTNV EAGGITQHIGAY V + ITF+DTP
Sbjct: 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTP 63
Query: 125 GHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN 184
GHEAFTAMRARGA VTDI +LVVAADDGVMPQT EAI HAK +GVP++VAINKIDK + N
Sbjct: 64 GHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEAN 123
Query: 185 LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAK 244
D++KQ+L ++PEE+GG F+ +SAKTG GI++LLE I L AE+LELKA PA+
Sbjct: 124 PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEVLELKANPEGPAR 183
Query: 245 GVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPV 304
G +IE +LDKG GPVATV++Q GTL+ DI+VAG YGR+R+M+++ GK I EAGPS PV
Sbjct: 184 GTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAGGEYGRVRTMVDDLGKPIKEAGPSKPV 243
Query: 305 EIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEK- 363
EI GL++VP +G+ V+ +EKKAR I R R+ +L+ +K + E + +I
Sbjct: 244 EILGLSEVPAAGDVFIVVKDEKKARAIAELRVVLLREAELASKKKGELEELIAEIKIRGE 303
Query: 364 VKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIG 423
+K L +I+K D GS E L SLK L D+VK+++IH VG I ESD+ LA AS A+IIG
Sbjct: 304 LKELNVILKADTQGSLEALKGSLKKLGVDEVKVRIIHAGVGGITESDVMLAAASDAVIIG 363
Query: 424 FNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGLAEIRQVIL 483
FNVR D R+LA+ + IRY+++IY +I+++++ + ++ EKKE ++GLAE+R V
Sbjct: 364 FNVRVDPEARRLAESEGVKIRYYDVIYKLIEDVEAAMKGMLEPEKKERVIGLAEVRAVFK 423
Query: 484 VNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFEC 539
+ KV IAGC + EG+I+R + +R++R+ +I+ GE++SLKRFKD+VKEV+ G EC
Sbjct: 424 LPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQEC 479
|
Length = 509 |
| >gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 463 bits (1193), Expect = e-145
Identities = 231/538 (42%), Positives = 338/538 (62%), Gaps = 11/538 (2%)
Query: 8 VIKNLMKLGQMVTINQVLDQETAMILVEEMGHVAHASKLNDPESFLLNEYNKNITAESLV 67
+IK+L G VT+NQ++D + ++ G + + N+ N N + E+ +
Sbjct: 182 IIKSLFLKGISVTVNQIIDISIISQVADDFGINIISEEKNNINEKTSNLDNTSAFTENSI 241
Query: 68 -RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGS----ITFLD 122
R PIVTI+GHVDHGKT+LLD IRKT + EAGGITQ IGAY V + I FLD
Sbjct: 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLD 301
Query: 123 TPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLD 182
TPGHEAF++MR+RGA VTDI +L++AADDGV PQT EAI + + + VP+IVAINKIDK +
Sbjct: 302 TPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKAN 361
Query: 183 INLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTP 242
N +RIKQ L +IPE++GG +P I ISA G I+KLLE I L AEI +LKA T
Sbjct: 362 ANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLAEIEDLKADPTQL 421
Query: 243 AKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSI 302
A+G+I+E+ LDK KGPVAT+L+Q+GTL DI+V G SY +IR M+N G I A PS
Sbjct: 422 AQGIILEAHLDKTKGPVATILVQNGTLHIGDIIVIGTSYAKIRGMINSLGNKINLATPSS 481
Query: 303 PVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVK-LSKQKLHKTENMFNDINK 361
VEI GL+ VP +GE V +EK+A+ + K + K +K+ T N +
Sbjct: 482 VVEIWGLSSVPATGEHFQVFNSEKEAKL--KIIKNKENNKKDTTKRITLSTTKTINKKDN 539
Query: 362 EKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAII 421
+K NL IIKTD GS E + S+ + KV++ +++ ++G + E+D+ A + A I
Sbjct: 540 KKQINL--IIKTDTQGSIEAIINSISQIPQKKVQLNILYASLGEVTETDVEFASTTNAEI 597
Query: 422 IGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGLAEIRQV 481
+ FN +K A+ NI I+ + +IY++++ I++ + +L+ E K+ +G AE++ V
Sbjct: 598 LAFNTNLAPGAKKAARKLNIIIKEYQVIYDLLEYIEALMEDLLDPEYKKVPIGEAEVKTV 657
Query: 482 ILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFEC 539
+ K +AGC + EG I +++ I+++R +I+ G++ SLKR K++V+E + G EC
Sbjct: 658 FPLAK-RFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNEC 714
|
Length = 742 |
| >gnl|CDD|206678 cd01891, TypA_BipA, Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases | Back alignment and domain information |
|---|
Score = 350 bits (901), Expect = e-112
Identities = 126/187 (67%), Positives = 156/187 (83%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AIIAHVDHGKTTL+D LL+QSGTFR+N+ + R+MDSN++E+ERGITI +KN +I Y T
Sbjct: 6 AIIAHVDHGKTTLVDALLKQSGTFRENEEVGERVMDSNDLERERGITILAKNTAITYKDT 65
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
+INIIDTPGHADFGGEVER+LSMVD VLLL+DA EGPMPQTRFV +KAL+ G KPIVV+N
Sbjct: 66 KINIIDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALEAGLKPIVVIN 125
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
KIDR +ARPE VVD FDLF +L AT+EQLDFP++Y SA +G+A+ N ++ PLFE
Sbjct: 126 KIDRPDARPEEVVDEVFDLFLELNATDEQLDFPIVYASAKNGWASLNLDDPSEDLDPLFE 185
Query: 1106 AILKYVP 1112
I+++VP
Sbjct: 186 TIIEHVP 192
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. coli has been shown to be phosphorylated on a tyrosine residue, while BipA from Salmonella and from E. coli K12 strains is not phosphorylated under the conditions assayed. The phosphorylation apparently modifies the rate of nucleotide hydrolysis, with the phosphorylated form showing greatly increased GTPase activity. Length = 194 |
| >gnl|CDD|234986 PRK01851, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 351 bits (902), Expect = e-110
Identities = 137/258 (53%), Positives = 182/258 (70%), Gaps = 1/258 (0%)
Query: 659 KNIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSN 718
+ + GVLLLDKP GLSSN+AL++ K LL AKK G+TGTLDP ATGLLPLCFGEATKFS
Sbjct: 12 RRPVDGVLLLDKPLGLSSNDALQRAKRLLRAKKAGHTGTLDPLATGLLPLCFGEATKFSQ 71
Query: 719 YLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMY 778
L +ADK YEA + LG+ T TGD EG+++ + + +E L F G+I Q+PPMY
Sbjct: 72 DLLDADKTYEATLRLGVRTSTGDAEGEVLA-TRPVDCDPAALEAALARFTGEIRQVPPMY 130
Query: 779 SALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSED 838
SALK G PLY+YAR+GIT++R+ R + I+ + ++ +P +T+R+ CSKGTYIR L+ED
Sbjct: 131 SALKKDGKPLYEYARAGITVEREARDVTIHALDLLACDLPDVTIRVTCSKGTYIRTLAED 190
Query: 839 IGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYL 898
IG+ LGCGAHL LRR G+ LTL++ + ++ + E ER + L P+D LLS+F + L
Sbjct: 191 IGEALGCGAHLTALRRTGVGGLTLEQAVTLEALEAADEAERDALLAPVDALLSTFPRVTL 250
Query: 899 SDLLSKRFLHGQNLFLSD 916
+ RFLHGQ L LSD
Sbjct: 251 DADAAGRFLHGQRLRLSD 268
|
Length = 303 |
| >gnl|CDD|235333 PRK05033, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 344 bits (885), Expect = e-108
Identities = 116/265 (43%), Positives = 167/265 (63%), Gaps = 12/265 (4%)
Query: 656 KKNKNIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATK 715
++ ++I +GVLLLDKP G+SSN+AL+K+K L NA K G+TG LDP ATG+LP+C GEATK
Sbjct: 4 RRGRDI-NGVLLLDKPQGMSSNDALQKVKRLFNANKAGHTGALDPLATGMLPICLGEATK 62
Query: 716 FSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIP 775
FS YL ++DK Y LG T+T D +G++++ + + S E +E L F G I Q+P
Sbjct: 63 FSQYLLDSDKRYRVTARLGQRTDTSDADGEVVE-ERPVTLSAEQLEAALEKFRGDIEQVP 121
Query: 776 PMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVL 835
MYSALKY+G PLY+YAR GI ++R+ R I IY++ +I + L L +HCSKGTYIR L
Sbjct: 122 SMYSALKYQGQPLYEYARQGIEVEREARPITIYELELIRFEGDELELEVHCSKGTYIRTL 181
Query: 836 SEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISS----------LIP 885
+D+G+ LGCGAH+ YLRR + L++ + ++ + E L+P
Sbjct: 182 VDDLGEKLGCGAHVIYLRRTQVAPYPLERMVTLEQLEALVEQAEQQEIPPAELLDPLLLP 241
Query: 886 IDILLSSFGIIYLSDLLSKRFLHGQ 910
+D +S + L + + F GQ
Sbjct: 242 MDSAVSDLPEVNLPEESAYYFKQGQ 266
|
Length = 312 |
| >gnl|CDD|211339 cd02573, PseudoU_synth_EcTruB, Pseudouridine synthase, Escherichia coli TruB like | Back alignment and domain information |
|---|
Score = 302 bits (777), Expect = 2e-94
Identities = 101/210 (48%), Positives = 140/210 (66%), Gaps = 2/210 (0%)
Query: 664 GVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEA 723
G+LLLDKP GL+S++ ++K++ LL KKVG+TGTLDP ATG+LP+ GEATK S YL +A
Sbjct: 1 GILLLDKPAGLTSHDVVQKVRRLLGTKKVGHTGTLDPLATGVLPIALGEATKLSQYLLDA 60
Query: 724 DKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKY 783
DK Y A + LG T+T D EG+II+ + + E IE L F G+I Q+PPMYSA+K
Sbjct: 61 DKTYRATVRLGEATDTDDAEGEIIETSPPPRLTEEEIEAALKAFTGEIEQVPPMYSAVKV 120
Query: 784 KGIPLYKYARSGITIKRKLRYIKIYKITIIDYT--IPYLTLRIHCSKGTYIRVLSEDIGK 841
G LY+ AR+G ++R R + IY + ++ + P +HCSKGTYIR L+ D+GK
Sbjct: 121 DGKRLYELARAGEEVERPPRKVTIYSLELLSFDPENPEADFEVHCSKGTYIRSLARDLGK 180
Query: 842 MLGCGAHLKYLRRIGIDKLTLDKCLNIDTI 871
LGCGAHL LRR TL++ + ++ +
Sbjct: 181 ALGCGAHLSALRRTRSGPFTLEQAITLEEL 210
|
This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruB and M. tuberculosis TruB make psi55 in the T loop of tRNAs. Psi55 is nearly universally conserved. E. coli TruB is not inhibited by RNA containing 5-fluorouridine. Length = 213 |
| >gnl|CDD|206674 cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family | Back alignment and domain information |
|---|
Score = 284 bits (730), Expect = 1e-88
Identities = 109/169 (64%), Positives = 128/169 (75%), Gaps = 5/169 (2%)
Query: 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHE 127
P+VT+MGHVDHGKT+LLD IRKTNV EAGGITQHIGAY V + ITF+DTPGHE
Sbjct: 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPIDVKIPGITFIDTPGHE 60
Query: 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL---DIN 184
AFT MRARGA VTDI +LVVAADDGVMPQT EAI HAK + VP+IVAINKIDK + +
Sbjct: 61 AFTNMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAANVPIIVAINKIDKPYGTEAD 120
Query: 185 LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEIL 233
+R+K +L ++ EE+GG + ISAKTG GI+ LLE I L AE+L
Sbjct: 121 PERVKNELSELGLVGEEWGGDVSIVPISAKTGEGIDDLLEAILLLAEVL 169
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. Length = 169 |
| >gnl|CDD|129523 TIGR00431, TruB, tRNA pseudouridine(55) synthase | Back alignment and domain information |
|---|
Score = 265 bits (679), Expect = 3e-81
Identities = 108/208 (51%), Positives = 147/208 (70%), Gaps = 1/208 (0%)
Query: 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLS 721
I+GVLLLDKP G++S +AL K++ LLN KKVG+TGTLDPFATG+LP+ G+ATK S YL+
Sbjct: 1 INGVLLLDKPQGMTSFDALAKVRRLLNVKKVGHTGTLDPFATGVLPILVGKATKLSPYLT 60
Query: 722 EADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSAL 781
+ DK Y A I LG+ T+T D +G+I++ P E +E L F G+I QIPPMYSAL
Sbjct: 61 DLDKEYRAEIRLGVRTDTLDPDGQIVETRPVNPT-TEDVEAALPTFRGEIEQIPPMYSAL 119
Query: 782 KYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGK 841
K G LY+YAR GI ++RK R + +Y + + Y P LTL +HCSKGTYIR L+ D+G+
Sbjct: 120 KVNGKRLYEYARQGIEVERKARPVTVYDLQFLKYEGPELTLEVHCSKGTYIRTLARDLGE 179
Query: 842 MLGCGAHLKYLRRIGIDKLTLDKCLNID 869
LGCGA++ +LRR + LD+ + ++
Sbjct: 180 KLGCGAYVSHLRRTAVGDFPLDQSVTLE 207
|
TruB, the tRNA pseudouridine 55 synthase, converts uracil to pseudouridine in the T loop of most tRNAs in all three domains of life. This model is built on a seed alignment of bacterial proteins only. Saccharomyces cerevisiae protein YNL292w (Pus4) has been shown to be the pseudouridine 55 synthase of both cytosolic and mitochondrial compartments, active at no other position on tRNA and the only enzyme active at that position in the species. A distinct yeast protein YLR175w, (centromere/microtubule-binding protein CBF5) is an rRNA pseudouridine synthase, and the archaeal set is much more similar to CBF5 than to Pus4. It is unclear whether the archaeal proteins found by this model are tRNA pseudouridine 55 synthases like TruB, rRNA pseudouridine synthases like CBF5, or (as suggested by the absence of paralogs in the Archaea) both. CBF5 likely has additional, eukaryotic-specific functions. The trusted cutoff is set above the scores for the archaeal homologs of unknown function, so yeast Pus4p scores between trusted and noise [Protein synthesis, tRNA and rRNA base modification]. Length = 209 |
| >gnl|CDD|223208 COG0130, TruB, Pseudouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 232 bits (595), Expect = 5e-69
Identities = 88/251 (35%), Positives = 132/251 (52%), Gaps = 32/251 (12%)
Query: 660 NIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNY 719
I GV+ LDKP G +S+ + +K +L +K G+ GTLDP ATG+LP+C GEATK Y
Sbjct: 12 EIYIGVINLDKPPGPTSHEVVAWVKRILGVEKAGHGGTLDPLATGVLPICLGEATKLVQY 71
Query: 720 LSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYS 779
L +ADK Y A + LG T++ E + L F G+I QIPPM+S
Sbjct: 72 LLDADKEYVATVRLGDQTDS-----------------EEEVRAALEAFTGEIYQIPPMFS 114
Query: 780 ALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDI 839
A+K ++R R I IY + +D+ +TLR+ CSKGTYIR L+ D+
Sbjct: 115 AVK-------------REVER--RKITIYDLLELDFDRNLVTLRVECSKGTYIRTLARDL 159
Query: 840 GKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLS 899
G+ LGCGAH+ LRR + + + + ++ + + + L+P++ LS + L
Sbjct: 160 GEALGCGAHMSELRRTRVGPFSEEDAVTLELLDELDAESLLRLLLPLESALSDLPRLVLK 219
Query: 900 DLLSKRFLHGQ 910
D + +G
Sbjct: 220 DSAANAIKYGA 230
|
Length = 271 |
| >gnl|CDD|216540 pfam01509, TruB_N, TruB family pseudouridylate synthase (N terminal domain) | Back alignment and domain information |
|---|
Score = 227 bits (581), Expect = 7e-69
Identities = 74/149 (49%), Positives = 104/149 (69%)
Query: 684 KYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIE 743
K +L AKKVG+TGTLDP ATG+LP+C G+ATK YL +ADK Y A I LG+ T+T D E
Sbjct: 1 KRILGAKKVGHTGTLDPLATGVLPVCVGKATKLLQYLLDADKEYRATIRLGVATDTLDAE 60
Query: 744 GKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLR 803
G+I++ + E IE++L +F G+I Q+PPMYSA+K G LY+ AR GI ++R R
Sbjct: 61 GEIVEEPPVDHITEEKIEEVLASFTGEIEQVPPMYSAVKVNGKRLYELAREGIEVERPPR 120
Query: 804 YIKIYKITIIDYTIPYLTLRIHCSKGTYI 832
+ IY + ++++ +P +T + CSKGTYI
Sbjct: 121 PVTIYSLELLEFDLPEVTFEVSCSKGTYI 149
|
Members of this family are involved in modifying bases in RNA molecules. They carry out the conversion of uracil bases to pseudouridine. This family includes TruB, a pseudouridylate synthase that specifically converts uracil 55 to pseudouridine in most tRNAs. This family also includes Cbf5p that modifies rRNA. Length = 149 |
| >gnl|CDD|178886 PRK00130, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 232 bits (595), Expect = 1e-68
Identities = 100/251 (39%), Positives = 152/251 (60%), Gaps = 3/251 (1%)
Query: 664 GVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEA 723
G+L + KP G++S + ++KI+ + KKVG+TGTLDP A+G+LP+C G+ATK +YL E
Sbjct: 3 GILNILKPPGMTSFDVVRKIRKIAKIKKVGHTGTLDPLASGVLPVCLGKATKIVDYLMEG 62
Query: 724 DKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKY 783
K Y A I LG+ T+T D EG+I+ + + E I + +++F G+I Q+PPMYSALK
Sbjct: 63 KKTYRAEIKLGVETDTYDREGEILKEKEVSHLTEEEIREAILSFQGEIDQVPPMYSALKI 122
Query: 784 KGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKML 843
G LY+ AR GI ++R+ R I IY I I++ +PY+ + CSKGTYIR L DIG+ L
Sbjct: 123 NGKKLYELARQGIEVEREARKITIYDIEILEIDLPYVIFDVKCSKGTYIRSLCFDIGEKL 182
Query: 844 GCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLSDLLS 903
CGA++ L R ++ + ++ + +E +IPID L + + L +
Sbjct: 183 NCGAYMWNLIRTETGPFNIENSITLEDL---NEENIEDYIIPIDKALKHYPKVSLDEKFE 239
Query: 904 KRFLHGQNLFL 914
K L+G +
Sbjct: 240 KLLLNGVKIKD 250
|
Length = 290 |
| >gnl|CDD|179870 PRK04642, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 225 bits (574), Expect = 8e-66
Identities = 110/254 (43%), Positives = 160/254 (62%), Gaps = 4/254 (1%)
Query: 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLS 721
+ G+LLLDKP GLSSNNAL+ + LL A+K G+TG+LDP ATGLLPLCFGEATK + L
Sbjct: 9 LDGILLLDKPAGLSSNNALQAARRLLRAEKGGHTGSLDPLATGLLPLCFGEATKIAGLLL 68
Query: 722 EADKYYEAIIHLGITTETGDIEGKIIDFNKNIPN-SIEIIEKILINFHGKISQIPPMYSA 780
+ K Y+A I LG+TT+T D +G+++ + +P+ S ++ L G+I Q P+YSA
Sbjct: 69 GSAKAYDAEIVLGVTTDTDDADGQVL-RERPVPDLSAAALQAALAPLIGRIRQRAPIYSA 127
Query: 781 LKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIG 840
LK G PLY AR G I+ +R ++++ I ++ Y P L LR+ C GTYIR L+ D+G
Sbjct: 128 LKQGGEPLYAKARRGEVIEAPVREVEVHAIEVLGYAAPRLRLRVTCGSGTYIRSLARDLG 187
Query: 841 KMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEY--ERISSLIPIDILLSSFGIIYL 898
++LGCGAH+ LRR+ ++ + + ++ + E E + L+P+ L+ F I L
Sbjct: 188 EVLGCGAHIAALRRLWVEPFRAPQMITLEALEAALEAGAEADTLLLPLAAGLADFPRIEL 247
Query: 899 SDLLSKRFLHGQNL 912
L+ RF GQ L
Sbjct: 248 DATLAARFRMGQRL 261
|
Length = 300 |
| >gnl|CDD|134035 PRK00020, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 214 bits (547), Expect = 4e-63
Identities = 102/221 (46%), Positives = 141/221 (63%), Gaps = 8/221 (3%)
Query: 656 KKNKNIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATK 715
K+ + GVLLLDKP GLSSN+AL++ K ++A K G+TGTLDPFATGLL C G ATK
Sbjct: 3 KRRGLALDGVLLLDKPVGLSSNHALQRAKRTVDAAKAGHTGTLDPFATGLLVCCMGRATK 62
Query: 716 FSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEK-----ILINFHGK 770
S + EADK Y+A + G T++GD+ G I+ P+ +E+ +L F G
Sbjct: 63 ISGRMLEADKTYQATLQFGEETDSGDLTGHIV---ARAPDGFAGVEEAALRDVLSRFVGT 119
Query: 771 ISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGT 830
I QIPPMYSALK G PLY+YAR+GI + R R + I I ++ ++ + + CSKGT
Sbjct: 120 IEQIPPMYSALKRDGKPLYEYARAGIELDRPPRQVTIRHIELLSFSGMQAQIDVACSKGT 179
Query: 831 YIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTI 871
YIR L++DIG+ LGC AHL LRR + +LD+ + ++ +
Sbjct: 180 YIRTLAQDIGRALGCHAHLAALRRTHVGPFSLDRAVTLEAL 220
|
Length = 244 |
| >gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain | Back alignment and domain information |
|---|
Score = 209 bits (535), Expect = 3e-62
Identities = 79/189 (41%), Positives = 96/189 (50%), Gaps = 12/189 (6%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
II HVDHGKTTL D LL +G K AR++D + E+ERGITI S E
Sbjct: 7 GIIGHVDHGKTTLTDALLYVTGAISKESAKGARVLDKLKEERERGITIKIAAVSFETKKR 66
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
INIIDTPGH DF E+ R S D +L++DAVEG MPQTR A LG IV +N
Sbjct: 67 LINIIDTPGHVDFTKEMIRGASQADGAILVVDAVEGVMPQTREHLLLAKTLGVPIIVFIN 126
Query: 1046 KIDR-SNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLF 1104
KIDR +A E VV+ + PV+ SAL G + L
Sbjct: 127 KIDRVDDAELEEVVEEISRELLEK-YGFGGETVPVVPGSALTGE----------GIDELL 175
Query: 1105 EAILKYVPV 1113
EA+ Y+P
Sbjct: 176 EALDLYLPS 184
|
This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184 |
| >gnl|CDD|234959 PRK01550, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 211 bits (540), Expect = 4e-61
Identities = 103/268 (38%), Positives = 157/268 (58%), Gaps = 14/268 (5%)
Query: 664 GVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEA 723
GVLLL KP G++S++ + K++ +L KKVG+TGTLDP +G+LP+C G ATK + YL++
Sbjct: 3 GVLLLHKPRGMTSHDCVFKLRKILRTKKVGHTGTLDPEVSGVLPICVGRATKIAEYLTDE 62
Query: 724 DKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSI--EIIEKILINFHGKISQIPPMYSAL 781
K YE + LG +T T D +G++++ K + I E IE L + G I QIPPMYSA+
Sbjct: 63 GKTYEGEVTLGFSTTTEDADGEVVE-TKPVDRPITREEIEAALASLTGTIEQIPPMYSAV 121
Query: 782 KYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYT------IPYLTLRIHCSKGTYIRVL 835
K G LY+YAR+GI ++R +R I I++ ++D R+ CSKGTY+R L
Sbjct: 122 KVNGKKLYEYARAGIEVERPVRQITIHEFVLLDSREDFEGETQSFRFRVTCSKGTYVRTL 181
Query: 836 SEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISS-LIPIDILLSSFG 894
+ IG+ LG AH+ +L R TL+ CL + I + + + S L PID LS
Sbjct: 182 AVMIGEKLGYPAHMSHLVRTASGGFTLEDCLTFEEIEENVQAGTVESILYPIDRALSHLP 241
Query: 895 IIYLSDLLSKRFLHG----QNLFLSDEN 918
+ + + +++ +G LF++ E
Sbjct: 242 KLVIDEKQAEKVKNGAFLKNPLFITVEA 269
|
Length = 304 |
| >gnl|CDD|235195 PRK04004, PRK04004, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 219 bits (560), Expect = 1e-60
Identities = 164/558 (29%), Positives = 254/558 (45%), Gaps = 118/558 (21%)
Query: 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGA----YNVVTN-------- 114
+R PIV ++GHVDHGKT+LLD IR T V EAGGITQHIGA +V+
Sbjct: 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKP 63
Query: 115 -HGSIT-----FLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISG 168
+ F+DTPGHEAFT +R RG + DI +LVV ++G PQT EAI K
Sbjct: 64 LPIKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRK 123
Query: 169 VPLIVAINKIDKL-------------DINL--DRIKQDLISEQVIPE------EYGGAS- 206
P +VA NKID++ I R++Q+L E+ + E E G ++
Sbjct: 124 TPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQEL--EEKLYELIGQLSELGFSAD 181
Query: 207 ------------PFISISAKTGVGINKLLENIS-LQAEILE--LKAPVTTPAKGVIIESR 251
+ +SAKTG GI LL ++ L LE LK V P KG ++E +
Sbjct: 182 RFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGPGKGTVLEVK 241
Query: 252 LDKGKGPVATVLIQSGTLRCSDIVVAGASYG----RIRSML-----------NENGKNIL 296
++G G V++ GTLR D +V G G ++R++L + K +
Sbjct: 242 EERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVD 301
Query: 297 E--AGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTEN 354
E A + + L +G L V+ R +VK ++ + E
Sbjct: 302 EVVAAAGVKISAPDLEDA-LAGSPLRVV------------RDEDVEEVK--EEVEEEIEE 346
Query: 355 MFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLA 414
+ + ++E V ++K D GS E L L+ + I + VG+I++ D+ A
Sbjct: 347 IRIETDEEGV-----VVKADTLGSLEALVNELR-----EEGIPIRKADVGDISKRDVIEA 396
Query: 415 IASK------AIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEK 468
+I+ FNV+ + A+ +++ I ++IY +I++ + + EK
Sbjct: 397 STVAEKDPLYGVILAFNVKVLPDAEEEAEKSDVKIFTGDVIYQLIEDYEKWVKEQKEAEK 456
Query: 469 K---ENLLGLAEIRQVILVNKV---SK--IAGCYILEGLIRRDSKIRILRNKNIIWTGEL 520
+ E ++ A+IR IL V S I G +L G I+ + I + + G +
Sbjct: 457 EKILEKIVRPAKIR--ILPGYVFRQSDPAIVGVEVLGGTIKPGVPL-IKEDGKRV--GTI 511
Query: 521 DSLKRFKDNVKEVKAGFE 538
++ +NVKE KAG E
Sbjct: 512 KQIQDQGENVKEAKAGME 529
|
Length = 586 |
| >gnl|CDD|179199 PRK00989, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 204 bits (520), Expect = 1e-59
Identities = 85/207 (41%), Positives = 137/207 (66%), Gaps = 3/207 (1%)
Query: 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEA-TKFSNYL 720
G+LL+DKP G +S + ++ + L+ KK+G+ GTLDPFATG++ + G T+ S+ L
Sbjct: 8 KEGILLVDKPQGRTSFSLIRSLTKLIGVKKIGHAGTLDPFATGVMVMLIGRKFTRLSDIL 67
Query: 721 SEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSA 780
DK Y A+ HLG TT++ D +GKI+ +K IP ++E + F G+I Q+PPM+SA
Sbjct: 68 LFEDKEYAAVAHLGTTTDSYDCDGKIVGRSKKIP-TLEEVLSAASYFQGEIQQVPPMFSA 126
Query: 781 LKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIG 840
K +G LY+YAR G++I+R+ ++++ + + Y P L + CSKGTYIR ++ ++G
Sbjct: 127 KKVQGKKLYEYARQGLSIERRPSTVQVH-LQLTKYEYPLLHFVVQCSKGTYIRSIAHELG 185
Query: 841 KMLGCGAHLKYLRRIGIDKLTLDKCLN 867
MLGCGA+L+ LRR+ ++D+C++
Sbjct: 186 NMLGCGAYLEELRRLRSGSFSIDQCID 212
|
Length = 230 |
| >gnl|CDD|179469 PRK02755, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 3e-57
Identities = 96/257 (37%), Positives = 145/257 (56%), Gaps = 7/257 (2%)
Query: 664 GVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEA 723
G L LDKP GL+S++ + +++ LL K+VG+ GTLDP ATG+LP+ G+AT+ YL
Sbjct: 4 GFLNLDKPAGLTSHDCVARLRRLLRLKRVGHGGTLDPAATGVLPIALGKATRLLPYLPG- 62
Query: 724 DKYYEAIIHLGITTETGDIEGKIIDFNKNIPN-SIEIIEKILINFHGKISQIPPMYSALK 782
+K Y I G+ T T D++G+I+ ++ P+ S+ IE L F GKI Q PP YSA++
Sbjct: 63 EKTYRGTIRFGVRTSTDDLQGEILS-SQPWPHLSLAEIETALPQFRGKIEQRPPQYSAIQ 121
Query: 783 YKGIPLYKYARSGITIKRKLRYIKIYKITIIDY---TIPYLTLRIHCSKGTYIRVLSEDI 839
G LY AR G T++ R + I+++ ++D+ P L L IHC GTYIR L+ D+
Sbjct: 122 VDGERLYALARRGETMELPARTVTIFRLQLLDWRPGDQPELDLEIHCGAGTYIRSLARDL 181
Query: 840 GKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLS 899
G +LG G L LRR L + L + + + L+P D+ L + LS
Sbjct: 182 GAVLGTGGTLAALRRTQSLGFHLAQSLPLPELENQLQAGTF-PLLPPDLALQHLPRVQLS 240
Query: 900 DLLSKRFLHGQNLFLSD 916
++R+ GQ + L +
Sbjct: 241 AEEAQRWCCGQRIPLEN 257
|
Length = 295 |
| >gnl|CDD|211323 cd00506, PseudoU_synth_TruB_like, Pseudouridine synthase, TruB family | Back alignment and domain information |
|---|
Score = 196 bits (499), Expect = 6e-57
Identities = 79/208 (37%), Positives = 120/208 (57%), Gaps = 2/208 (0%)
Query: 664 GVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEA 723
G+ +DKP G SS++ + I+ + A+KVG+ GTLDPFATG+L + G+ATK +L A
Sbjct: 1 GLFAVDKPQGPSSHDVVDTIRRIFLAEKVGHGGTLDPFATGVLVVGIGKATKLLKHLLAA 60
Query: 724 DKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKY 783
K Y AI LG T+T D G++I+ + E +E+ L G I Q+PP+YSA+K
Sbjct: 61 TKDYTAIGRLGQATDTFDATGQVIEETPYDHITHEQLERALETLTGDIQQVPPLYSAVKR 120
Query: 784 KGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPY--LTLRIHCSKGTYIRVLSEDIGK 841
+G Y+ AR G+ + + R IY++ I + P+ L + + C GTYIR L D+G
Sbjct: 121 QGQRAYELARRGLLVPDEARPPTIYELLCIRFNPPHFLLEVEVVCETGTYIRTLIHDLGL 180
Query: 842 MLGCGAHLKYLRRIGIDKLTLDKCLNID 869
LG GAH+ LRR + ++ + +
Sbjct: 181 ELGVGAHVTELRRTRVGPFKVENAVTLH 208
|
This group consists of eukaryotic, bacterial and archeal pseudouridine synthases similar to Escherichia coli TruB, Saccharomyces cerevisiae Pus4, M. tuberculosis TruB, S. cerevisiae Cbf5 and human dyskerin. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruB, M. tuberculosis TruB and S. cerevisiae Pus4, make psi55 in the T loop of tRNAs. Pus4 catalyses the formation of psi55 in both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. Mutations in human dyskerin cause X-linked dyskeratosis congenitas. Length = 210 |
| >gnl|CDD|235442 PRK05389, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 197 bits (502), Expect = 5e-56
Identities = 87/268 (32%), Positives = 146/268 (54%), Gaps = 3/268 (1%)
Query: 651 MQFHIKKNKNIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCF 710
M +K I G L+LDKP G++S A+ K+K+L +A+K G+ GTLDP A+G+LP+
Sbjct: 1 MARQRRKKGRPISGWLILDKPAGMTSTEAVSKVKWLFDAQKAGHAGTLDPLASGVLPIAL 60
Query: 711 GEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGK 770
GEATK Y+ + K Y + G +T D+EG++ + P + E I L F G+
Sbjct: 61 GEATKTVPYVMDGTKRYRFTVAWGEERDTDDLEGEVTATSDVRP-TDEEIRAALPAFTGE 119
Query: 771 ISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIP-YLTLRIHCSKG 829
I Q+PP +SA+K G Y AR G T++ R ++I ++T+++ + + C KG
Sbjct: 120 IMQVPPQFSAIKIDGERAYDLAREGETVELPARPVEIDRLTLVERPDADHAVFEVECGKG 179
Query: 830 TYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISS-LIPIDI 888
TY+R L+ D+G+ LGC H+ LRR + T + + ++ + + + + + L+P++
Sbjct: 180 TYVRSLARDLGRALGCYGHIAALRRTRVGPFTEEDAITLEKLEALARFAALDALLLPVET 239
Query: 889 LLSSFGIIYLSDLLSKRFLHGQNLFLSD 916
L + L+D + R G + L
Sbjct: 240 ALDDLPALALTDEQAARLRQGNPVLLRG 267
|
Length = 305 |
| >gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 4e-55
Identities = 71/182 (39%), Positives = 95/182 (52%), Gaps = 18/182 (9%)
Query: 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSE----------------AGGITQHIGAYNV 111
R + I+GHVDHGKT+L D + S+ GIT I A +
Sbjct: 2 RHRNIGIIGHVDHGKTTLTDALLYVTGAISKESAKGARVLDKLKEERERGITIKIAAVSF 61
Query: 112 VTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPL 171
T I +DTPGH FT RGA D +LVV A +GVMPQTRE + AK GVP+
Sbjct: 62 ETKKRLINIIDTPGHVDFTKEMIRGASQADGAILVVDAVEGVMPQTREHLLLAKTLGVPI 121
Query: 172 IVAINKIDKLDI-NLDRIKQDLISEQVIPEEYGG-ASPFISISAKTGVGINKLLENISLQ 229
IV INKID++D L+ + +++ E + +GG P + SA TG GI++LLE + L
Sbjct: 122 IVFINKIDRVDDAELEEVVEEISRELLEKYGFGGETVPVVPGSALTGEGIDELLEALDLY 181
Query: 230 AE 231
Sbjct: 182 LP 183
|
This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184 |
| >gnl|CDD|235042 PRK02484, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 4e-55
Identities = 91/263 (34%), Positives = 154/263 (58%), Gaps = 7/263 (2%)
Query: 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLS 721
I+G++ L K G++S++A+ K++ +L KK+G+ GTLDP G+LP+ G+AT+ Y++
Sbjct: 2 INGIINLKKEAGMTSHDAVFKLRKILQTKKIGHGGTLDPDVVGVLPIAVGKATRLIEYMT 61
Query: 722 EADKYYEAIIHLGITTETGDIEGKIIDFNK-NIPNSIEIIEKILINFHGKISQIPPMYSA 780
EA K YE I LG +T T D G+++ P + E +++ + +F GKI+QIPPMYSA
Sbjct: 62 EAGKVYEGEITLGYSTTTEDASGEVVAETPLTQPLTEEEVDQAMTSFTGKITQIPPMYSA 121
Query: 781 LKYKGIPLYKYARSGITIKRKLRYIKIY------KITIIDYTIPYLTLRIHCSKGTYIRV 834
+K G LY+YAR+G ++R R + IY ++ + + + R+ CSKGTY+R
Sbjct: 122 VKVNGKKLYEYARAGEEVERPKRQVTIYQFERTSPLSFDEDGLCRFSFRVACSKGTYVRT 181
Query: 835 LSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFG 894
L+ D+G+ LG AH+ +L R LTL++ + ++ I + E +S L PI+ ++
Sbjct: 182 LAVDLGEKLGYAAHMSFLTRTASAGLTLEQAVTLEEIAEKVEAGELSFLQPIEYGVADLP 241
Query: 895 IIYLSDLLSKRFLHGQNLFLSDE 917
+ L+ G+ + L +
Sbjct: 242 KVDLTPEQFTEVSFGRFISLDSQ 264
|
Length = 294 |
| >gnl|CDD|129581 TIGR00490, aEF-2, translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 7e-51
Identities = 148/519 (28%), Positives = 241/519 (46%), Gaps = 109/519 (21%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSI--EYNG 984
I+AH+DHGKTTL D+LL +G + +D +E E+ERGITI + N S+ EY G
Sbjct: 24 IVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG 83
Query: 985 TR--INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 1042
IN+IDTPGH DFGG+V R + VD ++++ AVEG MPQT V R+ALK KP++
Sbjct: 84 NEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVL 143
Query: 1043 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQL------------------DFPVIYTSA 1084
+NK+DR + + F K+ +L D V + SA
Sbjct: 144 FINKVDRLINELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSA 203
Query: 1085 LHGYA--------------------NENSKARQGNMIPLFEAILKYVPVH---------- 1114
+ +A E+ + PL + +L V H
Sbjct: 204 YYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDMVIRHLPSPIEAQKY 263
Query: 1115 -------------------KDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVV 1155
+ PL L I + + G++ +GR+ SG I+ +V
Sbjct: 264 RIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVY 323
Query: 1156 IMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGL 1215
I++ + KA+I Q+ V+ G +RV V+E +G+IV + G+++ G TIC + N
Sbjct: 324 IVD----RKAKARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDAVAGETICTTVE-NIT 378
Query: 1216 P---MLNIDEPTLTINFMVNNS---PLAGREGKFITT-RQIKNRLDHEIKNNIGLRVTQN 1268
P + +I EP +T+ N+ P K I RQ+ K + + V N
Sbjct: 379 PFESIKHISEPVVTVAIEAKNTKDLP------KLIEVLRQVA-------KEDPTVHVEIN 425
Query: 1269 KHDDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFK-TLNG-----ELYEP--Y 1319
+ + +SG GELHL I++E +R + G ++ S P V+++ T+ G E P +
Sbjct: 426 EETGE-HLISGMGELHLEIIVEKIREDYGLDVETSPPIVVYRETVTGTSPVVEGKSPNKH 484
Query: 1320 ENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRL 1358
++ +E + + +I ++ G + ++++ +KER RL
Sbjct: 485 NRFYIVVEPLEESVIQA---FKEGKIVDMKMKKKERRRL 520
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD [Protein synthesis, Translation factors]. Length = 720 |
| >gnl|CDD|172614 PRK14124, PRK14124, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 1e-50
Identities = 90/256 (35%), Positives = 145/256 (56%), Gaps = 5/256 (1%)
Query: 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYL 720
+ HG L+ KP G +S++ + +++ L +KVG+ GTLDPFATG+L + +AT+ YL
Sbjct: 1 MKHGFLVAYKPKGPTSHDVVDEVRKKLKTRKVGHAGTLDPFATGVLIVGVNKATRLLEYL 60
Query: 721 SEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSA 780
K Y + LG+ TET DI G++++ + + E I + + +F G+ Q+PP YSA
Sbjct: 61 KNEKKVYYVKMRLGLITETFDITGEVVE-ERECNVTEEEIREAIFSFVGEYKQVPPAYSA 119
Query: 781 LKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIG 840
KYKG LYK AR G I + +KIY+I I P ++ R+ S GTYIR L DIG
Sbjct: 120 KKYKGERLYKLAREGKIINLPPKEVKIYEIWDISIEGPDVSFRVEVSPGTYIRSLCMDIG 179
Query: 841 KMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLSD 900
LGCGA L R+ + K +++ +N+ + S E + +IP++ +L + +
Sbjct: 180 YKLGCGATAVELVRLSVGKFSIEDSINVFEV---SPEEIENRIIPMEEIL-DLPKVVIHQ 235
Query: 901 LLSKRFLHGQNLFLSD 916
+++ L+G ++L
Sbjct: 236 ESTEKILNGSQIYLEM 251
|
Length = 308 |
| >gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 1e-49
Identities = 74/189 (39%), Positives = 97/189 (51%), Gaps = 12/189 (6%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
+I HVDHGKTTL LL Q+G + +D+ + E+ERGITI + E+
Sbjct: 3 GVIGHVDHGKTTLTGSLLYQTGAIDRRGTRKETFLDTLKEERERGITIKTGVVEFEWPKR 62
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
RIN IDTPGH DF E R L+ D LL++DA EG PQTR AL G IV VN
Sbjct: 63 RINFIDTPGHEDFSKETVRGLAQADGALLVVDANEGVEPQTREHLNIALAGGLPIIVAVN 122
Query: 1046 KIDR-SNARPEWVVDATFDLFDKLCAT-EEQLDFPVIYTSALHGYANENSKARQGNMIPL 1103
KIDR + V+ +L + T + D P+I SAL G E L
Sbjct: 123 KIDRVGEEDFDEVLREIKELLKLIGFTFLKGKDVPIIPISALTGEGIE----------EL 172
Query: 1104 FEAILKYVP 1112
+AI++++P
Sbjct: 173 LDAIVEHLP 181
|
The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183 |
| >gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 3e-49
Identities = 150/556 (26%), Positives = 249/556 (44%), Gaps = 114/556 (20%)
Query: 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH----------- 115
+R+PIV+++GHVDHGKT+LLD IR + V EAGGITQHIGA + +
Sbjct: 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKK 61
Query: 116 -------GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISG 168
+ F+DTPGHEAFT +R RG + D+ +L+V ++G PQT+EA+ ++
Sbjct: 62 FKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYK 121
Query: 169 VPLIVAINKIDKL---------------DINLDRIKQDL---ISEQVI--------PEEY 202
P +VA NKID++ +++Q+L + VI E +
Sbjct: 122 TPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERF 181
Query: 203 GGASPF------ISISAKTGVGINKLLENIS-LQAEILE--LKAPVTTPAKGVIIESRLD 253
+ F I ISA TG GI +LL ++ L + LE LK PA+G I+E + +
Sbjct: 182 DRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKEE 241
Query: 254 KGKGPVATVLIQSGTLRCSDIVVAGASYG----RIRSML-------------NENGKNIL 296
G G +I G LR D + S R+R++L + +
Sbjct: 242 TGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEV 301
Query: 297 EAGPSIPVEIQGLTKVPFSGEELFVILNE--KKAREIGLFRQGKFRDVKLSKQKLHKTEN 354
A + + GL V +G + V+ +E +K +E + ++K+
Sbjct: 302 VAAAGVKIAAPGLDDV-MAGSPIRVVTDEEIEKVKEE---ILKEVEEIKI---------- 347
Query: 355 MFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLA 414
+++K D GS E L L+++ V I+ +G++++ D+ A
Sbjct: 348 --------DTDEEGVVVKADTLGSLEALVNELRDMG---VPIKKAD--IGDVSKRDVVEA 394
Query: 415 IASK------AIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEK 468
+K II FNV+ + + +I + NIIY +++E + I + +K
Sbjct: 395 GIAKQEDRVYGAIIAFNVKVLPGAEQELKKYDIKLFSDNIIYRLMEEFEEWIEGIEEEKK 454
Query: 469 K---ENLLGLAEIR---QVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDS 522
+ E ++ A+IR +++ I G +L G+IR+ L + G + S
Sbjct: 455 RKWMEAIIKPAKIRLIPKLVFRQSKPAIVGVEVLTGVIRQGYP---LMKDDGETVGTVRS 511
Query: 523 LKRFKDNVKEVKAGFE 538
++ +NVK AG E
Sbjct: 512 MQDKGENVKSASAGQE 527
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; the alignment generated by This model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region [Protein synthesis, Translation factors]. Length = 590 |
| >gnl|CDD|184522 PRK14123, PRK14123, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 5e-48
Identities = 94/276 (34%), Positives = 147/276 (53%), Gaps = 14/276 (5%)
Query: 664 GVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEA 723
G+L + K GL+S++ + K++ +L KK+G+TGTLDP G+LP+C G AT+ S+Y+ +
Sbjct: 4 GILPVYKERGLTSHDVVFKLRKILKTKKIGHTGTLDPEVAGVLPVCIGNATRVSDYVMDM 63
Query: 724 DKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEI--IEKILINFHGKISQIPPMYSAL 781
K YEA + +G +T T D G ++ I+++L F G I QIPPMYS++
Sbjct: 64 GKAYEATVSIGRSTTTEDQTGDTLETKGVHSADFNKDDIDRLLEQFKGIIEQIPPMYSSV 123
Query: 782 KYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYT-----IPYLTLRIHCSKGTYIRVLS 836
K G LY+YAR+ T++R R + I I I + +R+ C KGTYIR L+
Sbjct: 124 KVNGKKLYEYARNNETVERPKRKVNIKDIGRISELDFKENECHFKIRVICGKGTYIRTLA 183
Query: 837 EDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERI-SSLIPIDILLSSFGI 895
DIG LG AH+ L RI L L ++ I + E + + + L P++ L
Sbjct: 184 TDIGVKLGFPAHMSKLTRIESGGFVLKDSLTLEQIKELHEQDSLQNKLFPLEYGLKGLPS 243
Query: 896 IYLSDL-LSKRFLHGQNLFLSD-----ENIYILIKS 925
I + D + KR L+GQ ++ ++ + I
Sbjct: 244 IKIKDSHIKKRILNGQKFNKNEFDNKIKDQIVFIDD 279
|
Length = 305 |
| >gnl|CDD|236047 PRK07560, PRK07560, elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 4e-47
Identities = 133/477 (27%), Positives = 205/477 (42%), Gaps = 127/477 (26%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSI--EYN 983
IIAH+DHGKTTL D+LL +G + +D +E E+ RGITI + N S+ EY
Sbjct: 24 GIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYE 83
Query: 984 GTR--INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP- 1040
G IN+IDTPGH DFGG+V R + VD ++++DAVEG MPQT V R+AL+ KP
Sbjct: 84 GKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPV 143
Query: 1041 ---------------------------IVVVNKIDRSNARPE----WVVDATFDLFDKLC 1069
I VNK+ + A E W VD
Sbjct: 144 LFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVE-------- 195
Query: 1070 ATEEQLDFPVIYTSALHGYANENSKA--------------RQGNM------IPLFEAIL- 1108
D V + SAL+ +A +G PL E +L
Sbjct: 196 ------DGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLD 249
Query: 1109 -------------KY-VPV--HKD------------NSNNPLQLQIISLEYSSYLGKIGI 1140
KY +P D + N PL + + + + G++
Sbjct: 250 MVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVAT 309
Query: 1141 GRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEI 1200
GR+ SG ++ Q+V ++ K ++ Q+ ++ G +R V E +G+I +TG+++
Sbjct: 310 GRVFSGTLRKGQEVYLVGAK----KKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDA 365
Query: 1201 CIGSTICDPSKPNGLP---MLNIDEPTLTINFMVNNS---PLAGREGKFITT-RQIKNRL 1253
G T+ + P + +I EP +T+ N P K I RQ+
Sbjct: 366 RAGETVVSVE--DMTPFESLKHISEPVVTVAIEAKNPKDLP------KLIEVLRQLA--- 414
Query: 1254 DHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFK 1309
K + L V N+ + + +SG GELHL ++ ++R+ G E+ S P V+++
Sbjct: 415 ----KEDPTLVVKINE-ETGEHLLSGMGELHLEVITYRIKRDYGIEVVTSEPIVVYR 466
|
Length = 731 |
| >gnl|CDD|179739 PRK04099, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 5e-44
Identities = 87/260 (33%), Positives = 123/260 (47%), Gaps = 28/260 (10%)
Query: 670 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 729
KP G+SSN L ++K KK G++GTLDPFA G+L + FG+ TK +L + K Y A
Sbjct: 9 KPAGMSSNAFLSRLKRKYGVKKAGFSGTLDPFAKGVLIVAFGQYTKLFRFLKKTPKTYRA 68
Query: 730 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 789
+ LG ++ + DIE I P ++IEKIL + G+IS PP +SA K G Y
Sbjct: 69 TLWLGASSPSLDIE-NIESIQIIKPFDKDLIEKILKSLQGEISYTPPKFSAKKINGKRAY 127
Query: 790 KYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHL 849
+ AR G + K ++I+ ++ Y P+LT I S+G YIR L E I K LG L
Sbjct: 128 ELARKGEEFELKPITMEIFDCKLLSYNHPFLTFEITVSEGAYIRSLGELIAKKLGVNGTL 187
Query: 850 KYLRRIGIDKLTLD--KCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLSDLLSKRFL 907
L R+ K + K LN + + YL D
Sbjct: 188 SSLERLSEGKFVYENEKALNPLEYLNLPQ------------------NFYLGD--KNNLE 227
Query: 908 HGQNLFLSD-----ENIYIL 922
G+ LF+ D + IY +
Sbjct: 228 LGKKLFVEDLENKEDGIYYI 247
|
Length = 273 |
| >gnl|CDD|221359 pfam11987, IF-2, Translation-initiation factor 2 | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 4e-42
Identities = 56/105 (53%), Positives = 78/105 (74%)
Query: 353 ENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDIN 412
E++F I + +VK L +I+K DV GS E + +SL+ LSTD+VK+ +IH VG I ESD+
Sbjct: 4 EDLFEQIKEGEVKELNLILKADVQGSLEAIKDSLEKLSTDEVKVNIIHAGVGAITESDVM 63
Query: 413 LAIASKAIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIK 457
LA AS AIIIGFNVR DA RKLA+ ++IRY++IIY++I ++K
Sbjct: 64 LASASNAIIIGFNVRPDAKARKLAEQEGVDIRYYSIIYDLIDDVK 108
|
IF-2 is a translation initiator in each of the three main phylogenetic domains (Eukaryotes, Bacteria and Archaea). IF2 interacts with formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal subunits. Through these interactions, IF2 promotes the binding of the initiator tRNA to the A site in the smaller ribosomal subunit and catalyzes the hydrolysis of GTP following initiation-complex formation. Length = 109 |
| >gnl|CDD|235113 PRK03287, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 1e-40
Identities = 74/214 (34%), Positives = 114/214 (53%), Gaps = 10/214 (4%)
Query: 664 GVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEA 723
G++++DKP G++S++ + + + L +KVG+ GTLDP ATG+L L ATK +L+
Sbjct: 10 GLVVVDKPAGMTSHDVVARCRRLFGTRKVGHAGTLDPMATGVLVLGVERATKLLGHLTLT 69
Query: 724 DKYYEAIIHLGITTETGDIEGKIIDFNKNIPNS---IEIIEKILINFHGKISQIPPMYSA 780
DK Y A I LG T T D EG+++ + S E I + G+I Q+P SA
Sbjct: 70 DKSYTATIRLGQATTTDDAEGEVL---ASADASAVTDEAIAAAVAALTGEIMQVPSAVSA 126
Query: 781 LKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDY--TIPYLTL--RIHCSKGTYIRVLS 836
+K G Y R+G ++ R + + + ++ ++ L + CS GTYIR L+
Sbjct: 127 IKVDGKRAYARVRAGEEVELPARPVTVSRFEVLAVRRDGDFIDLDVEVDCSSGTYIRALA 186
Query: 837 EDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDT 870
D+G LG G HL LRR + TLD+ +D
Sbjct: 187 RDLGAALGVGGHLTALRRTRVGPFTLDQARTLDE 220
|
Length = 298 |
| >gnl|CDD|206672 cd01885, EF2, Elongation Factor 2 (EF2) in archaea and eukarya | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 3e-40
Identities = 63/132 (47%), Positives = 81/132 (61%), Gaps = 9/132 (6%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY---- 982
IIAHVDHGKTTL D LL +G + AR +D+ E E+ERGITI S S+ +
Sbjct: 5 IIAHVDHGKTTLSDSLLASAGIISEKLAGKARYLDTREDEQERGITIKSSAISLYFEYEE 64
Query: 983 -----NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 1037
N IN+ID+PGH DF EV L + D L+++DAVEG QT V R+AL+
Sbjct: 65 EKMDGNDYLINLIDSPGHVDFSSEVTAALRLTDGALVVVDAVEGVCVQTETVLRQALEER 124
Query: 1038 FKPIVVVNKIDR 1049
KP++V+NKIDR
Sbjct: 125 VKPVLVINKIDR 136
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Second, the protein can be post-translationally modified by ADP-ribosylation. Various bacterial toxins perform this reaction after modification of a specific histidine residue to diphthamide, but there is evidence for endogenous ADP ribosylase activity. Similar to the bacterial toxins, it is presumed that modification by the endogenous enzyme also inhibits eEF2 activity. Length = 218 |
| >gnl|CDD|239673 cd03702, IF2_mtIF2_II, This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2 | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 3e-40
Identities = 54/94 (57%), Positives = 78/94 (82%)
Query: 243 AKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSI 302
A+GV+IES+LDKG+GPVATVL+Q+GTL+ D++VAG +YG++R+M +ENGK + EAGPS
Sbjct: 1 AEGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTYGKVRAMFDENGKRVKEAGPST 60
Query: 303 PVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQ 336
PVEI GL VP +G++ V+ +EK+A+EI +R+
Sbjct: 61 PVEILGLKGVPQAGDKFLVVESEKEAKEIAEYRK 94
|
IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2. Length = 95 |
| >gnl|CDD|237833 PRK14845, PRK14845, translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 3e-40
Identities = 157/537 (29%), Positives = 241/537 (44%), Gaps = 111/537 (20%)
Query: 83 TSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN-------------HGSIT-----FLDTP 124
T+LLD IRKT V EAGGITQHIGA + + I F+DTP
Sbjct: 475 TTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTP 534
Query: 125 GHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLD-- 182
GHEAFT++R RG + D+ VLVV ++G PQT EAI + P +VA NKID +
Sbjct: 535 GHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGW 594
Query: 183 ---------INLDRIKQDLISE------QVIPE--EYG-GASPF------------ISIS 212
+N + Q ++E ++I + E G A F + +S
Sbjct: 595 NISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVS 654
Query: 213 AKTGVGINKLLENIS-LQAEILE--LKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTL 269
AKTG GI +LL ++ L + LE LK V AKG I+E + +KG G +I GTL
Sbjct: 655 AKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTTIDAIIYDGTL 714
Query: 270 RCSDIVVAG----ASYGRIRSMLNE-------------NGKNILEAGPSIPVEIQGLTKV 312
R D +V G ++R++L + + + A + + GL +V
Sbjct: 715 RRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEV 774
Query: 313 PFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIK 372
+G + ++ ++K + ++ ++V+ +K I +K I+IK
Sbjct: 775 -LAGSPIRIVPTKEKIEK---AKEEVMKEVEEAK------------IETDKEG---ILIK 815
Query: 373 TDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASK------AIIIGFNV 426
D GS E L L+ K I + VG+I + D+ A++ K +I+GFNV
Sbjct: 816 ADTLGSLEALANELR-----KAGIPIKKAEVGDITKKDVIEALSYKQENPLYGVILGFNV 870
Query: 427 RADASTRKLAQINNINIRYHNIIYNIIKE----IKSEITNLIPLEKKENLLGLAEIR--- 479
+ ++ A+ + I NIIY ++++ +K E E E L+ IR
Sbjct: 871 KVLPEAQEEAEKYGVKIFVDNIIYKLVEDYTEWVKEE-EEKKKRELFEKLIKPGIIRLLP 929
Query: 480 QVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAG 536
I I G +LEG +R L ++ + G + S+K +NVKE KAG
Sbjct: 930 DCIFRRSNPAIVGVEVLEGTLRVGVT---LIKEDGMKVGTVRSIKDRGENVKEAKAG 983
|
Length = 1049 |
| >gnl|CDD|179381 PRK02193, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 5e-40
Identities = 86/213 (40%), Positives = 119/213 (55%), Gaps = 5/213 (2%)
Query: 665 VLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEAD 724
+ LL KP G+SS +K N KK+G+TGTLDP A+GLL + E TK +YL + D
Sbjct: 2 IKLLYKPKGISSFKFIKNFAKTNNIKKIGHTGTLDPLASGLLLVATDEDTKLIDYLDQKD 61
Query: 725 KYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYK 784
K Y A I G + T D EG+II+ ++NI + E +E+ L N G Q+PP++SA K
Sbjct: 62 KTYIAKIKFGFISTTYDSEGQIINVSQNIKVTKENLEEALNNLVGSQKQVPPVFSAKKVN 121
Query: 785 GIPLYKYARSGITIKRKLRYIKIYKITIIDYTIP--YLTLRIHCSKGTYIRVLSEDIGKM 842
G Y AR G I+ K IKI KI ++++ S+GTYIR L D+GKM
Sbjct: 122 GKRAYDLARQGKQIELKPIEIKISKIELLNFDEKLQNCVFMWVVSRGTYIRSLIHDLGKM 181
Query: 843 LGCGAHLKYLRRI---GIDKLTLDKCLNIDTII 872
L GA++ L R +DK L++ LN +I
Sbjct: 182 LKTGAYMSDLERTKIGNLDKNFLNQSLNPLDLI 214
|
Length = 279 |
| >gnl|CDD|184521 PRK14122, PRK14122, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (382), Expect = 5e-40
Identities = 81/283 (28%), Positives = 130/283 (45%), Gaps = 44/283 (15%)
Query: 665 VLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEAD 724
V +DKP GL+S++ + + + L ++VG+TGTLDP ATG+L LC ++TK +LS D
Sbjct: 3 VYAVDKPLGLTSHDVVNRARRALGTRRVGHTGTLDPLATGVLVLCTDDSTKLVPFLSAED 62
Query: 725 KYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYK 784
K Y A + G TT T D EG I + P + +E L F G Q+PP YSA+K
Sbjct: 63 KEYLAWVSFGATTPTLDAEGPISEEAPVSPLDEKDLEAALPGFLGLTEQVPPQYSAIKVG 122
Query: 785 GIPLYKYARSGITIKRKLRYIKIYKITIIDY----------------------------- 815
G+ Y+ AR+G ++ R + +++ ++ +
Sbjct: 123 GVRAYEAARAGGALELPARPVVYHELELLAFEPSVAPIPRPIAPSAEGWTPDPRGRPVTL 182
Query: 816 -----TIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDT 870
P LR+ GTY+R + D+G LG AHL L R + + L+ +++
Sbjct: 183 PEPLGEYPTALLRLVVGSGTYVRSFARDLGAALGVPAHLSGLVRTRVGRYGLEDAVSL-- 240
Query: 871 IIKYSEYERISSLIPIDILLS-SFGIIYLSDLLSKRFLHGQNL 912
E ++ I L + F + LS ++R G+
Sbjct: 241 -------EDLAEAPGIPELDALDFPRVELSHAEARRVRQGKPP 276
|
Length = 312 |
| >gnl|CDD|206731 cd04168, TetM_like, Tet(M)-like family includes Tet(M), Tet(O), Tet(W), and OtrA, containing tetracycline resistant proteins | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 5e-37
Identities = 68/136 (50%), Positives = 85/136 (62%), Gaps = 4/136 (2%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKN---QNINARIMDSNEIEKERGITIFSKNCSIEYN 983
I+AHVD GKTTL + LL SG R+ R DS E+E++RGITIFS S ++
Sbjct: 4 ILAHVDAGKTTLTESLLYTSGAIRELGSVDKGTTR-TDSMELERQRGITIFSAVASFQWE 62
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
T++NIIDTPGH DF EVER LS++D +L+I AVEG QTR + R KL I+
Sbjct: 63 DTKVNIIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILFRLLRKLNIPTIIF 122
Query: 1044 VNKIDRSNARPEWVVD 1059
VNKIDR+ A E V
Sbjct: 123 VNKIDRAGADLEKVYQ 138
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. Length = 237 |
| >gnl|CDD|223557 COG0481, LepA, Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 5e-37
Identities = 95/300 (31%), Positives = 154/300 (51%), Gaps = 38/300 (12%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
+IIAH+DHGK+TL D LL +G + + + A+++DS +IE+ERGITI ++ + Y
Sbjct: 13 SIIAHIDHGKSTLADRLLELTGGLSERE-MRAQVLDSMDIERERGITIKAQAVRLNYKAK 71
Query: 986 R-----INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 1040
+N+IDTPGH DF EV R L+ + LL++DA +G QT AL+ +
Sbjct: 72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEI 131
Query: 1041 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNM 1100
I V+NKID A PE V D+ + A++ + SA K G
Sbjct: 132 IPVLNKIDLPAADPERVKQEIEDIIG-IDASD------AVLVSA---------KTGIG-- 173
Query: 1101 IP-LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNG 1159
I + EAI++ +P K + + PL+ I Y +YLG + + RI G +K + +M+
Sbjct: 174 IEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMS- 232
Query: 1160 PDDKPNKAK--INQIRVFKGLDRVLVNEALSGDI-VLITGIEEIC---IGSTICDPSKPN 1213
+ ++++ +F V V+E +G++ +I GI+++ +G TI S P
Sbjct: 233 -----TGKEYEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPA 286
|
Length = 603 |
| >gnl|CDD|179806 PRK04270, PRK04270, H/ACA RNA-protein complex component Cbf5p; Reviewed | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 7e-37
Identities = 70/195 (35%), Positives = 98/195 (50%), Gaps = 35/195 (17%)
Query: 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYL 720
I GV+ LDKP G +S+ ++ +L +K G+ GTLDP TG+LP+ G+ATK L
Sbjct: 20 IKFGVVNLDKPPGPTSHEVAAWVRDILGVEKAGHGGTLDPKVTGVLPVALGKATKVVQAL 79
Query: 721 SEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSA 780
E+ K Y ++HL GD+ E I K+ F G+I Q PP+ SA
Sbjct: 80 LESGKEYVCVMHL-----HGDV-------------PEEDIRKVFKEFTGEIYQKPPLKSA 121
Query: 781 LKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIG 840
+KR+LR IY++ I++ + R+ C GTYIR L DIG
Sbjct: 122 -----------------VKRRLRVRTIYELEILEIDGRDVLFRVRCESGTYIRKLCHDIG 164
Query: 841 KMLGCGAHLKYLRRI 855
LG GAH++ LRR
Sbjct: 165 LALGTGAHMQELRRT 179
|
Length = 300 |
| >gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 1e-36
Identities = 64/138 (46%), Positives = 85/138 (61%), Gaps = 3/138 (2%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRK--NQNINARIMDSNEIEKERGITIFSKNCSIEYN 983
I+AH+D GKTTL + +L +G K + A MD E E+ERGITI S ++ +
Sbjct: 14 GIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWK 73
Query: 984 GT-RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 1042
G RIN+IDTPGH DF EVER L ++D ++++DAVEG PQT V R+A K G I+
Sbjct: 74 GDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRIL 133
Query: 1043 VVNKIDRSNARPEWVVDA 1060
VNK+DR A VV+
Sbjct: 134 FVNKMDRLGADFYLVVEQ 151
|
Length = 697 |
| >gnl|CDD|206677 cd01890, LepA, LepA also known as Elongation Factor 4 (EF4) | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 9e-36
Identities = 69/193 (35%), Positives = 101/193 (52%), Gaps = 25/193 (12%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY--- 982
+IIAH+DHGK+TL D LL +GT + + +++DS ++E+ERGITI ++ + Y
Sbjct: 4 SIIAHIDHGKSTLADRLLELTGTVSEREM-KEQVLDSMDLERERGITIKAQAVRLFYKAK 62
Query: 983 NGTR--INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 1040
+G +N+IDTPGH DF EV R L+ + LL++DA +G QT AL+ +
Sbjct: 63 DGEEYLLNLIDTPGHVDFSYEVSRSLAACEGALLVVDATQGVEAQTLANFYLALENNLEI 122
Query: 1041 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNM 1100
I V+NKID A P+ V D+ E I SA K G
Sbjct: 123 IPVINKIDLPAADPDRVKQEIEDVLG--LDASE-----AILVSA---------KTGLG-- 164
Query: 1101 IP-LFEAILKYVP 1112
+ L EAI++ +P
Sbjct: 165 VEDLLEAIVERIP 177
|
LepA (also known as elongation factor 4, EF4) belongs to the GTPase family and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. Length = 179 |
| >gnl|CDD|239672 cd03701, IF2_IF5B_II, IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 2e-35
Identities = 55/94 (58%), Positives = 79/94 (84%)
Query: 243 AKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSI 302
A+G +IES+LDKG+GPVATV++Q+GTL+ D++VAG +YG+IR+M++ENGK +LEAGPS
Sbjct: 1 AEGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTYGKIRTMVDENGKALLEAGPST 60
Query: 303 PVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQ 336
PVEI GL VP +G+ + V+ +EK+A+EIG +R
Sbjct: 61 PVEILGLKDVPKAGDGVLVVASEKEAKEIGSYRL 94
|
IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma. Length = 95 |
| >gnl|CDD|235462 PRK05433, PRK05433, GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (362), Expect = 4e-35
Identities = 92/299 (30%), Positives = 153/299 (51%), Gaps = 38/299 (12%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY--- 982
+IIAH+DHGK+TL D L+ +GT + + + A+++DS ++E+ERGITI ++ + Y
Sbjct: 11 SIIAHIDHGKSTLADRLIELTGTLSERE-MKAQVLDSMDLERERGITIKAQAVRLNYKAK 69
Query: 983 NGTR--INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 1040
+G +N+IDTPGH DF EV R L+ + LL++DA +G QT AL+ +
Sbjct: 70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEI 129
Query: 1041 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNM 1100
I V+NKID A PE V D+ + + SA K G
Sbjct: 130 IPVLNKIDLPAADPERVKQEIEDVIG--IDASD-----AVLVSA---------KTGIG-- 171
Query: 1101 IP-LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNG 1159
I + EAI++ +P K + + PL+ I Y +Y G + + R++ G +K + +M+
Sbjct: 172 IEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMS- 230
Query: 1160 PDDKPNKAK--INQIRVFKGLDRVLVNEALSGDI-VLITGIEEIC---IGSTICDPSKP 1212
+ ++++ VF V V+E +G++ +I GI+++ +G TI P
Sbjct: 231 -----TGKEYEVDEVGVFT-PKMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNP 283
|
Length = 600 |
| >gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 6e-34
Identities = 63/176 (35%), Positives = 85/176 (48%), Gaps = 20/176 (11%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAG----------------GITQHIGAYNVVTN 114
V ++GHVDHGKT+L + G GIT G
Sbjct: 1 NVGVIGHVDHGKTTLTGSLLYQTGAIDRRGTRKETFLDTLKEERERGITIKTGVVEFEWP 60
Query: 115 HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVA 174
I F+DTPGHE F+ RG D +LVV A++GV PQTRE + A G+P+IVA
Sbjct: 61 KRRINFIDTPGHEDFSKETVRGLAQADGALLVVDANEGVEPQTREHLNIALAGGLPIIVA 120
Query: 175 INKIDKLD-INLDRIKQ---DLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+NKID++ + D + + +L+ G P I ISA TG GI +LL+ I
Sbjct: 121 VNKIDRVGEEDFDEVLREIKELLKLIGFTFLKGKDVPIIPISALTGEGIEELLDAI 176
|
The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183 |
| >gnl|CDD|179300 PRK01528, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 8e-34
Identities = 93/262 (35%), Positives = 135/262 (51%), Gaps = 16/262 (6%)
Query: 670 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 729
KP G+SS + +K +L K+G+ GTLD A G+LPL GEATK L +A K Y
Sbjct: 10 KPRGISSAKLVSIVKKILGKVKIGHAGTLDVEAEGVLPLAVGEATKLVQLLIDAKKTYIF 69
Query: 730 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 789
+ G T++GD GK+I IP S E + F G I+QIPP +SALK G+ Y
Sbjct: 70 TVKFGKQTDSGDYAGKVIATKDYIP-SKEEAYAVCSKFIGNITQIPPAFSALKVNGVRAY 128
Query: 790 KYARSGITIKRKLRYIKIYKITIIDY-----TIPYLTLRIHCSKGTYIRVLSEDIGKMLG 844
K AR G ++ K R I IY + +++ T Y T CSKGTYIR L+ED+ L
Sbjct: 129 KLAREGKEVELKPRNITIYDLKCLNFDEKNATATYYT---ECSKGTYIRTLAEDLALSLQ 185
Query: 845 CGAHLKYLRRIGIDKLTLDKCLNI---DTIIKYSEYERISSLIPIDILLSSFGIIYLSDL 901
+ LRR + + + I D I K S E+ I I+ +L ++ +D
Sbjct: 186 SLGFVIELRRTQVGIFKEENAIRIKSSDAITKNSLEEKS---IKIEAILDDILVLDATDE 242
Query: 902 LSKRFLHGQN-LFLSDENIYIL 922
+++ +GQ LF ++++ L
Sbjct: 243 QAQKIKYGQKCLFDYEKDVNFL 264
|
Length = 292 |
| >gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 1e-33
Identities = 93/296 (31%), Positives = 145/296 (48%), Gaps = 34/296 (11%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY---- 982
IIAH+DHGK+TL D LL +G + + + +++DS ++E+ERGITI ++ + Y
Sbjct: 8 IIAHIDHGKSTLADRLLEYTGAISERE-MREQVLDSMDLERERGITIKAQAVRLNYKAKD 66
Query: 983 -NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
+N+IDTPGH DF EV R L+ + LLL+DA +G QT AL+ + I
Sbjct: 67 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEII 126
Query: 1042 VVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMI 1101
V+NKID +A PE V ++ E I SA K G I
Sbjct: 127 PVINKIDLPSADPERVKKEIEEVIG--LDASE-----AILASA---------KTGIG--I 168
Query: 1102 P-LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGP 1160
+ EAI+K VP K + + PL+ I Y +Y G + + R+ G IK + M+
Sbjct: 169 EEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTG 228
Query: 1161 DDKPNKAKINQIRVFKGLDRVLVNEALSGDI-VLITGIEEIC---IGSTICDPSKP 1212
+ ++++ VF +E +G++ +I GI+++ +G TI P
Sbjct: 229 KEYE----VDEVGVFT-PKLTKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNP 279
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown [Unknown function, General]. Length = 595 |
| >gnl|CDD|211338 cd02572, PseudoU_synth_hDyskerin, Pseudouridine synthase, human dyskerin like | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 3e-33
Identities = 67/194 (34%), Positives = 94/194 (48%), Gaps = 37/194 (19%)
Query: 664 GVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEA 723
GV+ LDKP G SS+ + IK +L +K G++GTLDP TG LP+C AT+ EA
Sbjct: 3 GVINLDKPSGPSSHEVVAWIKRILGVEKTGHSGTLDPKVTGCLPVCIDRATRLVKSQQEA 62
Query: 724 DKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKY 783
K Y ++ L D+ E + ++L F G I Q PP+ SA
Sbjct: 63 GKEYVCVMRL-----HDDV-------------DEEKVRRVLEEFTGAIFQRPPLISA--- 101
Query: 784 KGIPLYKYARSGITIKRKLRYIKIYKITIIDY--TIPYLTLRIHCSKGTYIRVLSEDIGK 841
+KR+LR IY+ +++Y + R+ C GTYIR L IG
Sbjct: 102 --------------VKRQLRVRTIYESKLLEYDGERRLVLFRVSCEAGTYIRTLCVHIGL 147
Query: 842 MLGCGAHLKYLRRI 855
+LG GAH++ LRR
Sbjct: 148 LLGVGAHMQELRRT 161
|
This group consists of eukaryotic and archeal pseudouridine synthases similar to human dyskerin, Saccharomyces cerevisiae Cbf5, and Drosophila melanogaster Mfl (minifly protein). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactor is required. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. D. melanogaster mfl hosts in its fourth intron, a box H/AC snoRNA gene. In addition dyskerin is likely to have a structural role in the telomerase complex. Mutations in human dyskerin cause X-linked dyskeratosis congenitas. Mutations in Drosophila Mfl results in miniflies that suffer abnormalities. Length = 182 |
| >gnl|CDD|211344 cd02867, PseudoU_synth_TruB_4, Pseudouridine synthase homolog 4 | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 5e-33
Identities = 70/223 (31%), Positives = 95/223 (42%), Gaps = 39/223 (17%)
Query: 664 GVLLLDKPYGLSSNNALKKIKYLLNAK-----------------------------KVGY 694
GV ++KP G++S L +K L K+G+
Sbjct: 1 GVFAINKPSGITSAQVLNDLKPLFLNSALFKDKIQRAVAKRGKKARRRKGRKRSKLKIGH 60
Query: 695 TGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIP 754
GTLDP ATG+L + G TK K YEA G +T T D EGKI+ K P
Sbjct: 61 GGTLDPLATGVLVVGVGAGTKQLQDYLSCSKTYEATGLFGASTTTYDREGKIL---KKKP 117
Query: 755 NSI---EIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGI----TIKRKLRYIKI 807
S E IE++L F G I Q+PP+YSALK G LY+YAR G I+R+ +
Sbjct: 118 YSHITREDIEEVLAKFRGDIKQVPPLYSALKMDGKRLYEYAREGKPLPRPIERRQVVVSE 177
Query: 808 YKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLK 850
+ P T + Y R + + +GK L A +
Sbjct: 178 LLVKDWIEPGPLFTRTVEEEGKQYERSVVKMLGKELKTFAEVT 220
|
This group consists of Eukaryotic TruB proteins similar to Saccharomyces cerevisiae Pus4. S. cerevisiae Pus4, makes psi55 in the T loop of both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Length = 312 |
| >gnl|CDD|206673 cd01886, EF-G, Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis | Back alignment and domain information |
|---|
Score = 127 bits (323), Expect = 2e-32
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNI--NARIMDSNEIEKERGITIFSKNCSIEYNG 984
IIAH+D GKTT + +L +G K + MD E E+ERGITI S + +
Sbjct: 4 IIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDWMEQERERGITIQSAATTCFWKD 63
Query: 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVV 1044
RINIIDTPGH DF EVER L ++D + + DAV G PQT V R+A + G I V
Sbjct: 64 HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVQPQTETVWRQADRYGVPRIAFV 123
Query: 1045 NKIDRSNARPEWVVD 1059
NK+DR+ A VV+
Sbjct: 124 NKMDRTGADFYRVVE 138
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains both eukaryotic and bacterial members. Length = 270 |
| >gnl|CDD|232971 TIGR00425, CBF5, rRNA pseudouridine synthase, putative | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 2e-32
Identities = 80/263 (30%), Positives = 121/263 (46%), Gaps = 45/263 (17%)
Query: 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYL 720
I +GV+ LDKP G SS+ + ++ +LN +K G+ GTLDP TG+LP+C AT+
Sbjct: 32 ISYGVVNLDKPSGPSSHEVVAWVRRILNVEKTGHGGTLDPKVTGVLPVCIERATRLVKSQ 91
Query: 721 SEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSA 780
EA K Y ++ L D + E I ++L F G+I Q PP+ SA
Sbjct: 92 QEAPKEYVCLMRL-----HRDAKE-------------EDILRVLKEFTGRIFQRPPLKSA 133
Query: 781 LKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIG 840
+KR+LR IY+ +++ + R+ C GTYIR L DIG
Sbjct: 134 -----------------VKRQLRVRTIYESELLEKDGKDVLFRVSCEAGTYIRKLCVDIG 176
Query: 841 KMLGCGAHLKYLRRIGIDKLTLDKCLNI----DTIIKYSE-----YERISSLIPIDILLS 891
+ LG GAH++ LRR D + + D + + E Y R + P++ LL
Sbjct: 177 EALGTGAHMQELRRTRSGCFGEDDMVTLHDLLDAYVFWKEDGDESYLR-RIIKPMEYLLR 235
Query: 892 SFGIIYLSDLLSKRFLHGQNLFL 914
+ + D HG +L +
Sbjct: 236 HLKRVVVKDSAVDAICHGADLMV 258
|
This family, found in archaea and eukaryotes, includes the only archaeal proteins markedly similar to bacterial TruB, the tRNA pseudouridine 55 synthase. However, among two related yeast proteins, the archaeal set matches yeast YLR175w far better than YNL292w. The first, termed centromere/microtubule binding protein 5 (CBF5), is an apparent rRNA pseudouridine synthase, while the second is the exclusive tRNA pseudouridine 55 synthase for both cytosolic and mitochondrial compartments. It is unclear whether archaeal proteins found by this model modify tRNA, rRNA, or both [Protein synthesis, tRNA and rRNA base modification]. Length = 322 |
| >gnl|CDD|239681 cd03710, BipA_TypA_C, BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2 | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 6e-32
Identities = 38/78 (48%), Positives = 58/78 (74%)
Query: 1317 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFIT 1376
EP E L +D+ E G +++KL R G++ ++E + R RLE++IPSRGLIGF++EF+T
Sbjct: 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLT 60
Query: 1377 LTRGTGLISHVFEEYAPF 1394
TRGTG+++HVF+ Y P+
Sbjct: 61 DTRGTGIMNHVFDGYEPY 78
|
A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion. Length = 79 |
| >gnl|CDD|237834 PRK14846, truB, tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (319), Expect = 2e-31
Identities = 88/263 (33%), Positives = 134/263 (50%), Gaps = 10/263 (3%)
Query: 670 KPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 729
KP G+SS + +K +L K+G+ GTLD A G+LP GEATK + L +A K Y
Sbjct: 10 KPRGISSAQLVSIVKKILGKTKIGHAGTLDVEAEGILPFAVGEATKLIHLLIDARKTYIF 69
Query: 730 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLY 789
+ G+ T +GD GK+I IP S E + F G ++QIPP +SALK G+ Y
Sbjct: 70 TVKFGMQTNSGDCAGKVIATKDCIP-SQEEAYAVCSKFIGNVTQIPPAFSALKVNGVRAY 128
Query: 790 KYARSGITIKRKLRYIKIYKITIIDY-----TIPYLTLRIHCSKGTYIRVLSEDIGKMLG 844
K AR G ++ K R I IY + +++ T Y T CSKGTYIR L+ED+ L
Sbjct: 129 KLAREGKKVELKPRNITIYDLKCLNFDEKNATATYYT---ECSKGTYIRTLAEDLALSLQ 185
Query: 845 CGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLSDLLSK 904
+ LRR + + + I + + ++ I I+ +L ++ +D ++
Sbjct: 186 SLGFVIELRRTQVGIFKEENAIRIKSPDEITKNALEEKSIKIEAILDDILVLDATDSQAQ 245
Query: 905 RFLHGQN-LFLSDENIYILIKSA 926
+ +GQ LF +++ L K A
Sbjct: 246 QIKYGQKCLFNYEKDFRHLAKFA 268
|
Length = 345 |
| >gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 8e-31
Identities = 57/142 (40%), Positives = 79/142 (55%), Gaps = 16/142 (11%)
Query: 928 IAHVDHGKTTLIDHLLRQSGTFRKNQNINAR--------IMDSNEIEKERGITIFSKNCS 979
+ H GKTTL + +L +G I+ MD E+ERGI+I S +
Sbjct: 1 VGHSGAGKTTLTEAILFYTGA------IHRIGEVEDGTTTMDFMPEERERGISITSAATT 54
Query: 980 IEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
E+ G +IN+IDTPGH DF GEVER L ++D ++++ AV G PQT V R+A K G
Sbjct: 55 CEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYG-V 113
Query: 1040 P-IVVVNKIDRSNARPEWVVDA 1060
P I+ VNK+DR+ A V+
Sbjct: 114 PRIIFVNKMDRAGADFFRVLAQ 135
|
Length = 668 |
| >gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 1e-30
Identities = 62/152 (40%), Positives = 86/152 (56%), Gaps = 12/152 (7%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYN 983
I+AH+D GKTTL + +L +G K + + D E+ERGITI S S +++
Sbjct: 12 GILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD 71
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
RIN+IDTPGH DF GEVER L ++D +++ DAV G PQT V R+A + G ++
Sbjct: 72 NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIF 131
Query: 1044 VNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075
+NK+DR A DLF L EE+
Sbjct: 132 INKMDRVGA----------DLFKVLEDIEERF 153
|
Length = 687 |
| >gnl|CDD|234787 PRK00521, rbfA, ribosome-binding factor A; Validated | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-30
Identities = 35/108 (32%), Positives = 66/108 (61%)
Query: 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNIL 600
R R+ QIQR+++EI+ +I++P + ++T+T+V+++ D ++AK++ T + + L
Sbjct: 7 RALRVAEQIQRELAEILQREIKDPRLGMVTVTDVEVSPDLAHAKVYVTVLGDEEDKEEAL 66
Query: 601 DNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAMMISKLIDGIK 648
L KA ++R +L K+L + +P L F YD S+E I +L+ K
Sbjct: 67 AALKKAAGFLRSELGKRLRLRYVPELRFVYDESLEYGNRIDELLRKAK 114
|
Length = 120 |
| >gnl|CDD|216854 pfam02033, RBFA, Ribosome-binding factor A | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-30
Identities = 34/104 (32%), Positives = 66/104 (63%)
Query: 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNIL 600
R R+ IQR+++EI+ ++++P + ++T+TEV+++ D S+AK++ + + + L
Sbjct: 1 RTERVAELIQRELAEILQRELKDPRLGLVTVTEVEVSPDLSHAKVYVSVLGDEEEKEETL 60
Query: 601 DNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAMMISKLI 644
L+KA +IR +L+K+L + P L F YD+S+E I +L+
Sbjct: 61 KALNKAAGFIRSELAKRLRLRYTPELRFVYDDSLEYGARIEELL 104
|
Length = 104 |
| >gnl|CDD|240409 PTZ00416, PTZ00416, elongation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 9e-29
Identities = 55/135 (40%), Positives = 79/135 (58%), Gaps = 10/135 (7%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
++IAHVDHGK+TL D L+ ++G +AR D+ E+ERGITI S S+ Y
Sbjct: 23 SVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHD 82
Query: 986 R----------INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK 1035
IN+ID+PGH DF EV L + D L+++D VEG QT V R+AL+
Sbjct: 83 LEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQ 142
Query: 1036 LGFKPIVVVNKIDRS 1050
+P++ +NK+DR+
Sbjct: 143 ERIRPVLFINKVDRA 157
|
Length = 836 |
| >gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 3e-28
Identities = 63/155 (40%), Positives = 88/155 (56%), Gaps = 5/155 (3%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNG 984
I AH+D GKTT + +L +G K ++ A MD E EKERGITI S ++ + G
Sbjct: 15 ISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG 74
Query: 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVV 1044
RINIIDTPGH DF EVER L ++D + ++DAV G PQ+ V R+A + I V
Sbjct: 75 HRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFV 134
Query: 1045 NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079
NK+D++ A VV+ + +L A + P+
Sbjct: 135 NKMDKTGANFLRVVNQ---IKQRLGANAVPIQLPI 166
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G [Protein synthesis, Translation factors]. Length = 689 |
| >gnl|CDD|239662 cd03691, BipA_TypA_II, BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-27
Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
Query: 1122 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRV 1181
LQ+ + +L+Y Y+G+I IGRI G +K Q V ++ D K KAKI ++ F+GL RV
Sbjct: 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVK-RDGKIEKAKITKLFGFEGLKRV 59
Query: 1182 LVNEALSGDIVLITGIEEICIGSTICD 1208
V EA +GDIV I GIE+I IG TICD
Sbjct: 60 EVEEAEAGDIVAIAGIEDITIGDTICD 86
|
BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion. Length = 86 |
| >gnl|CDD|206732 cd04169, RF3, Release Factor 3 (RF3) protein involved in the terminal step of translocation in bacteria | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-26
Identities = 55/138 (39%), Positives = 79/138 (57%), Gaps = 22/138 (15%)
Query: 926 AIIAHVDHGKTTLIDHLL------RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCS 979
AII+H D GKTTL + LL +++G + ++ D EIEK+RGI++ S
Sbjct: 6 AIISHPDAGKTTLTEKLLLFGGAIQEAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQ 65
Query: 980 IEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
EY G IN++DTPGH DF + R L+ VD+ +++IDA +G PQTR KL F+
Sbjct: 66 FEYKGCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTR-------KL-FE 117
Query: 1040 -------PIV-VVNKIDR 1049
PI+ +NK+DR
Sbjct: 118 VCRLRGIPIITFINKLDR 135
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. Length = 268 |
| >gnl|CDD|223927 COG0858, RbfA, Ribosome-binding factor A [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 6e-26
Identities = 41/109 (37%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFN-KDISIKNI 599
R R+ QIQ++++EI+ +I++P + ++T+T+V+++ D S+AK++ T ++ S I
Sbjct: 6 RAKRVAEQIQKELAEILQREIKDPRLGLVTVTDVEVSKDLSHAKVYVTVLGDEESSKAEI 65
Query: 600 LDNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAMMISKLIDGIK 648
L L+KAK +IR +L K+L + P L+F YD+SIEN I L++ +K
Sbjct: 66 LAALNKAKGFIRSELGKRLRLRKTPELHFVYDDSIENGNKIDALLNDLK 114
|
Length = 118 |
| >gnl|CDD|239663 cd03692, mtIF2_IVc, mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-26
Identities = 37/66 (56%), Positives = 53/66 (80%)
Query: 474 GLAEIRQVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEV 533
G AE+R V ++KV IAGCY+ +G I+R++K+R+LRN +I+ G++ SLKRFKD+VKEV
Sbjct: 1 GEAEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEV 60
Query: 534 KAGFEC 539
K G+EC
Sbjct: 61 KKGYEC 66
|
The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits. Length = 84 |
| >gnl|CDD|206730 cd04167, Snu114p, Snu114p, a spliceosome protein, is a GTPase | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 8e-26
Identities = 49/133 (36%), Positives = 76/133 (57%), Gaps = 10/133 (7%)
Query: 926 AIIAHVDHGKTTLIDHLL----RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE 981
I H+ HGKT+L+D L+ +++ + + R D+ + E+ERGI+I S S+
Sbjct: 4 CIAGHLHHGKTSLLDMLIEQTHKRTPSVKLGWKPL-RYTDTRKDEQERGISIKSNPISLV 62
Query: 982 YNGTR-----INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL 1036
++ INIIDTPGH +F EV L + D V+L++D VEG T + R A++
Sbjct: 63 LEDSKGKSYLINIIDTPGHVNFMDEVAAALRLCDGVVLVVDVVEGLTSVTERLIRHAIQE 122
Query: 1037 GFKPIVVVNKIDR 1049
G ++V+NKIDR
Sbjct: 123 GLPMVLVINKIDR 135
|
Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. Length = 213 |
| >gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 3e-25
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 14/153 (9%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINAR--------IMDSNEIEKERGITIFSKN 977
A++ H GKTTL + LL +G I+ + D + EK+R ++I +
Sbjct: 3 ALVGHSGSGKTTLAEALLYATGA------IDRLGRVEDGNTVSDYDPEEKKRKMSIETSV 56
Query: 978 CSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 1037
+E+NG +IN+IDTPG+ADF GE L VD L++++A G T V
Sbjct: 57 APLEWNGHKINLIDTPGYADFVGETLSALRAVDAALIVVEAQSGVEVGTEKVWEFLDDAK 116
Query: 1038 FKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA 1070
I+ +NK+DR+ A + + A + F +
Sbjct: 117 LPRIIFINKMDRARADFDKTLAALREAFGRPVV 149
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains only bacterial members. Length = 268 |
| >gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 5e-25
Identities = 55/140 (39%), Positives = 77/140 (55%), Gaps = 16/140 (11%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY--- 982
++IAHVDHGK+TL D L+ +G + + R+ D+ E ERGITI S S+ Y
Sbjct: 23 SVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMT 82
Query: 983 -------------NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFV 1029
N IN+ID+PGH DF EV L + D L+++D +EG QT V
Sbjct: 83 DESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV 142
Query: 1030 TRKALKLGFKPIVVVNKIDR 1049
R+AL +P++ VNK+DR
Sbjct: 143 LRQALGERIRPVLTVNKMDR 162
|
Length = 843 |
| >gnl|CDD|237185 PRK12739, PRK12739, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 8e-25
Identities = 63/138 (45%), Positives = 80/138 (57%), Gaps = 8/138 (5%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNIN-----ARIMDSNEIEKERGITIFSKNCSIE 981
I+AH+D GKTT + +L +G K+ I A MD E E+ERGITI S +
Sbjct: 13 IMAHIDAGKTTTTERILYYTG---KSHKIGEVHDGAATMDWMEQEQERGITITSAATTCF 69
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
+ G RINIIDTPGH DF EVER L ++D + + DAV G PQ+ V R+A K G I
Sbjct: 70 WKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRI 129
Query: 1042 VVVNKIDRSNARPEWVVD 1059
V VNK+DR A V+
Sbjct: 130 VFVNKMDRIGADFFRSVE 147
|
Length = 691 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-24
Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 18/165 (10%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAG-GITQHIGAYNVVTNHGSITF--LDTPGHEA 128
+ I+G + GK++LL+ + + +E G T++ + + + F LDT G E
Sbjct: 4 IVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQED 63
Query: 129 FTAMR-------ARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL 181
+ A+R +V DIV+LV+ ++ + QT+E I HA+ SGVP+I+ NKID
Sbjct: 64 YDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SGVPIILVGNKIDLR 122
Query: 182 DINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
D L L ++ P I +SA+TG I+ + +
Sbjct: 123 DAKLKTHVAFLFAKL-------NGEPIIPLSAETGKNIDSAFKIV 160
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|234569 PRK00007, PRK00007, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-24
Identities = 64/150 (42%), Positives = 83/150 (55%), Gaps = 11/150 (7%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNI-----NARIMDSNEIEKERGITIFSKNCSIE 981
I+AH+D GKTT + +L +G N I A MD E E+ERGITI S +
Sbjct: 15 IMAHIDAGKTTTTERILFYTG---VNHKIGEVHDGAATMDWMEQEQERGITITSAATTCF 71
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
+ RINIIDTPGH DF EVER L ++D + + DAV G PQ+ V R+A K I
Sbjct: 72 WKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRI 131
Query: 1042 VVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071
VNK+DR+ A VV+ + D+L A
Sbjct: 132 AFVNKMDRTGADFYRVVE---QIKDRLGAN 158
|
Length = 693 |
| >gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-24
Identities = 86/322 (26%), Positives = 130/322 (40%), Gaps = 41/322 (12%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTF---------RKNQNIN------ARIMDSNEIEK 967
+ I HVD GK+TL+ LL G ++ + + A ++D + E+
Sbjct: 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEER 67
Query: 968 ERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG------ 1021
ERG+TI + E + IID PGH DF + S D +L++DA +G
Sbjct: 68 ERGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGF 127
Query: 1022 -PMPQTRFVTRKALKLGFKP-IVVVNKIDR---SNARPEWVVDATFDLFDKLCATEEQLD 1076
QTR A LG K IV VNK+D R E +V L K+ + D
Sbjct: 128 GVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLL-KMVGYNPK-D 185
Query: 1077 FPVIYTSALHG-YANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYL 1135
P I S G + S+ P L + + + PL+L I + S +
Sbjct: 186 VPFIPISGFKGDNLTKKSENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDVYSISGI 245
Query: 1136 GKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--L 1193
G + +GR+ SG IK Q V M P +++ + +++A GD V
Sbjct: 246 GTVPVGRVESGVIKPGQKVTFM------PAGVV-GEVKSIEM-HHEEISQAEPGDNVGFN 297
Query: 1194 ITGIE--EICIGSTICDPSKPN 1213
+ G+E +I G I P
Sbjct: 298 VRGVEKNDIRRGDVIGHSDNPP 319
|
Length = 428 |
| >gnl|CDD|206734 cd04171, SelB, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 9e-24
Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 6/161 (3%)
Query: 71 IVTIMGHVDHGKTSLLDYI--RKTNVVFSE-AGGITQHIG-AYNVVTNHGSITFLDTPGH 126
I+ GH+DHGKT+L+ + +T+ + E GIT +G AY + + + F+D PGH
Sbjct: 1 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPDGKRLGFIDVPGH 60
Query: 127 EAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINL 185
E F GA D V+LVVAAD+G+MPQTRE + ++ G+ +V + K D +D +
Sbjct: 61 EKFVKNMLAGAGGIDAVLLVVAADEGIMPQTREHLEILELLGIKKGLVVLTKADLVDEDR 120
Query: 186 DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ ++ I E + A P +S+ TG GI +L +
Sbjct: 121 LELVEEEILELLAGTFLADA-PIFPVSSVTGEGIEELKNYL 160
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains bacterial SelBs, as well as, one from archaea. Length = 170 |
| >gnl|CDD|226593 COG4108, PrfC, Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-23
Identities = 54/135 (40%), Positives = 79/135 (58%), Gaps = 16/135 (11%)
Query: 926 AIIAHVDHGKTTLIDHLL------RQSGTFR-KNQNINARIMDSNEIEKERGITIFSKNC 978
AII+H D GKTTL + LL +++GT + + +A+ D EIEK+RGI++ S
Sbjct: 16 AIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAK-SDWMEIEKQRGISVTSSVM 74
Query: 979 SIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTR--F-VTRKALK 1035
+Y +N++DTPGH DF + R L+ VD+ +++IDA +G PQT F V R
Sbjct: 75 QFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCR---- 130
Query: 1036 LGFKPIV-VVNKIDR 1049
L PI +NK+DR
Sbjct: 131 LRDIPIFTFINKLDR 145
|
Length = 528 |
| >gnl|CDD|178673 PLN03127, PLN03127, Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-22
Identities = 88/300 (29%), Positives = 141/300 (47%), Gaps = 35/300 (11%)
Query: 928 IAHVDHGKTTL---IDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG 984
I HVDHGKTTL I +L + G K + + +D EK RGITI + + E
Sbjct: 67 IGHVDHGKTTLTAAITKVLAEEG---KAKAVAFDEIDKAPEEKARGITIATAHVEYETAK 123
Query: 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV- 1043
+D PGHAD+ + + +D +L++ A +GPMPQT+ A ++G +VV
Sbjct: 124 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVF 183
Query: 1044 VNKIDRSNARPEWVVDATFDLFDKLCATE--EQLDF--------PVIYTSALHGYANENS 1093
+NK+D VVD +L + L E E L F P+I SAL N
Sbjct: 184 LNKVD--------VVDDE-ELLE-LVEMELRELLSFYKFPGDEIPIIRGSALSALQGTND 233
Query: 1094 KARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQD 1153
+ + ++ L +A+ +Y+P + P + I + G + GR+ G IK ++
Sbjct: 234 EIGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEE 293
Query: 1154 VVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--LITGI--EEICIGSTICDP 1209
V I+ P K + + +FK ++++ +GD V L+ G+ E++ G IC P
Sbjct: 294 VEIVGLRPGGPLKTTVTGVEMFKK----ILDQGQAGDNVGLLLRGLKREDVQRGQVICKP 349
|
Length = 447 |
| >gnl|CDD|182508 PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 8e-22
Identities = 74/218 (33%), Positives = 105/218 (48%), Gaps = 25/218 (11%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTN---VVFSEAGGITQHIG-AYNVVTNHGSITFLDTPGH 126
I+ GHVDHGKT+LL I N + + G+T +G AY + + F+D PGH
Sbjct: 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH 61
Query: 127 EAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINL 185
E F + G D +LVVA DDGVM QTRE +A +++G P L VA+ K D++D
Sbjct: 62 EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDE-- 119
Query: 186 DRIKQDLISEQVIPE--EYG-GASPFISISAKTGVGINKLLENISLQAEILELKAPVTTP 242
RI + + QV EYG + +A G GI+ +L+ +L+L P
Sbjct: 120 ARIAE--VRRQVKAVLREYGFAEAKLFVTAATEGRGID------ALREHLLQL--PEREH 169
Query: 243 AKGVIIESRLD-----KGKGPVATVLIQSGTLRCSDIV 275
A +D KG G V T SG ++ D +
Sbjct: 170 AAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTL 207
|
Length = 614 |
| >gnl|CDD|179105 PRK00741, prfC, peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-21
Identities = 56/142 (39%), Positives = 78/142 (54%), Gaps = 30/142 (21%)
Query: 926 AIIAHVDHGKTTLIDHLL------RQSGTF--RKNQNINARIMDSN--EIEKERGITIFS 975
AII+H D GKTTL + LL +++GT RK+ R S+ E+EK+RGI++ S
Sbjct: 14 AIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSG----RHATSDWMEMEKQRGISVTS 69
Query: 976 KNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK 1035
Y IN++DTPGH DF + R L+ VD+ L++IDA +G PQTR K
Sbjct: 70 SVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTR-------K 122
Query: 1036 LGFK-------PIVV-VNKIDR 1049
L + PI +NK+DR
Sbjct: 123 L-MEVCRLRDTPIFTFINKLDR 143
|
Length = 526 |
| >gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-21
Identities = 65/227 (28%), Positives = 108/227 (47%), Gaps = 7/227 (3%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVVF---SEAGGITQHIGAYNVVTNHGSITFLDTPGHE 127
I+ GHVDHGKT+LL + + G+T +G + F+D PGHE
Sbjct: 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE 61
Query: 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINLD 186
F + G D +LVV AD+GVM QT E +A + G+P IV I K D+++
Sbjct: 62 KFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEI 121
Query: 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGV 246
+ + + + + + + SAKTG GI +L + + E L++K + P +
Sbjct: 122 KRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLDIK-RIQKPLRMA 180
Query: 247 IIESRLDKGKGPVATVLIQSGTLRCSD-IVVAGASY-GRIRSMLNEN 291
I + KG G V T SG ++ D + + ++ R++++ +N
Sbjct: 181 IDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQAQN 227
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes [Protein synthesis, Translation factors]. Length = 581 |
| >gnl|CDD|129191 TIGR00082, rbfA, ribosome-binding factor A | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 3e-21
Identities = 35/109 (32%), Positives = 68/109 (62%)
Query: 540 ERLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNI 599
R R+E+ I R+I+ I+ +I++P + ++T+T+V+++ D +AK+F + + +I +
Sbjct: 4 YRKERVESDIIREINRILIREIKDPRVGMLTVTKVEVSKDLQHAKVFVDCYGDEEAIDRV 63
Query: 600 LDNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAMMISKLIDGIK 648
+ L+KAK +IR L + + + P L+F DNS++ M I LI+ +K
Sbjct: 64 VKALNKAKGFIRSLLGQAMRLRKTPELHFVKDNSLDKGMRIENLINSLK 112
|
Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'terminal helix region of 16S rRNA. Mutants lacking rbfA have a cold-sensitive phenotype [Transcription, RNA processing]. Length = 114 |
| >gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 4e-20
Identities = 72/259 (27%), Positives = 115/259 (44%), Gaps = 31/259 (11%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINAR---------------IMDSNEIEK 967
I A I HVDHGK+T + HLL + G + +MD + E+
Sbjct: 8 INVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEER 67
Query: 968 ERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP---MP 1024
ERG+TI + E + + I+D PGH DF + S D +L++ +G P
Sbjct: 68 ERGVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQP 127
Query: 1025 QTRFVTRKALKLGFKPIVV-VNKIDRSN---ARPEWVVDATFDLFDKLCATEEQLDFPVI 1080
QTR A LG ++V +NK+D N E + +L K+ + + F I
Sbjct: 128 QTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPF--I 185
Query: 1081 YTSALHG----YANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLG 1136
SA +G +EN+ +G L EA+ P K ++ PL++ I + + +G
Sbjct: 186 PISAWNGDNVIKKSENTPWYKGKT--LLEALDALEPPEKP-TDKPLRIPIQDVYSITGVG 242
Query: 1137 KIGIGRILSGRIKSLQDVV 1155
+ +GR+ +G +K VV
Sbjct: 243 TVPVGRVETGVLKPGDKVV 261
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels [Protein synthesis, Translation factors]. Length = 426 |
| >gnl|CDD|201388 pfam00679, EFG_C, Elongation factor G C-terminus | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 7e-20
Identities = 26/80 (32%), Positives = 40/80 (50%)
Query: 1314 ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNE 1373
L EP + + + E G ++ LN R G++ ++E + RV +E +P L GF E
Sbjct: 1 VLLEPIMKVEITVPEEYLGDVIGDLNQRRGEILDMEPDGGGRVVIEAEVPLAELFGFSTE 60
Query: 1374 FITLTRGTGLISHVFEEYAP 1393
+LT+G G S F Y P
Sbjct: 61 LRSLTQGRGSFSMEFSGYEP 80
|
This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold. Length = 89 |
| >gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 1e-19
Identities = 44/140 (31%), Positives = 63/140 (45%), Gaps = 19/140 (13%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAG------------------GITQHIGAYNVVT 113
+ I+ H+D GKT+L + I + S+ G GIT A +
Sbjct: 13 IGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW 72
Query: 114 N-HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLI 172
I +DTPGH FT R +V D V+VV A +GV PQT A GVP I
Sbjct: 73 KGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRI 132
Query: 173 VAINKIDKLDINLDRIKQDL 192
+ +NK+D+L + + + L
Sbjct: 133 LFVNKMDRLGADFYLVVEQL 152
|
Length = 697 |
| >gnl|CDD|129576 TIGR00485, EF-Tu, translation elongation factor TU | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 3e-19
Identities = 87/293 (29%), Positives = 139/293 (47%), Gaps = 25/293 (8%)
Query: 928 IAHVDHGKTTL---IDHLLRQSG--TFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 982
I HVDHGKTTL I +L + G R I D+ EK RGITI + + E
Sbjct: 18 IGHVDHGKTTLTAAITTVLAKEGGAAARAYDQI-----DNAPEEKARGITINTAHVEYET 72
Query: 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 1042
+D PGHAD+ + + +D +L++ A +GPMPQTR A ++G IV
Sbjct: 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIV 132
Query: 1043 V-VNKIDRSNARPEWVVDATFDLFDKLCATE-EQLDFPVIYTSALHGYANENSKARQGNM 1100
V +NK D + E + ++ + L + D P+I SAL A E + +
Sbjct: 133 VFLNKCDMVD-DEELLELVEMEVRELLSEYDFPGDDTPIIRGSALK--ALEGDAEWEAKI 189
Query: 1101 IPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGP 1160
+ L +A+ +Y+P + ++ P + I + + G + GR+ G +K ++V I+
Sbjct: 190 LELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLK 249
Query: 1161 DDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--LITGI--EEICIGSTICDP 1209
D + K + + +F R ++E +GD V L+ GI EEI G + P
Sbjct: 250 DTR--KTTVTGVEMF----RKELDEGRAGDNVGLLLRGIKREEIERGMVLAKP 296
|
This model models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation [Protein synthesis, Translation factors]. Length = 394 |
| >gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 6e-19
Identities = 85/269 (31%), Positives = 126/269 (46%), Gaps = 54/269 (20%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINAR---------------IMDSNEIEKERG 970
A+I HVDHGK+TL+ LL ++G ++ R +MD + E+ERG
Sbjct: 10 AVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERG 69
Query: 971 ITI---FSKNCSIEYNGTRINIIDTPGHADFGGEVERIL---SMVDNVLLLIDA--VEGP 1022
+TI K + +Y T I+D PGH DF V+ ++ S D +L++ A G
Sbjct: 70 VTIDLAHKKFETDKYYFT---IVDCPGHRDF---VKNMITGASQADAAVLVVAADDAGGV 123
Query: 1023 MPQTR---FVTRKALKLGFKP-IVVVNKIDRSN---ARPEWVVDATFDLFDKLCATEEQL 1075
MPQTR F+ R LG IV +NK+D N R E V + L + +
Sbjct: 124 MPQTREHVFLAR---TLGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPD-- 178
Query: 1076 DFPVIYTSALHGYANENSKARQGNMIP------LFEAILKYVPVHKDNSNNPLQLQIISL 1129
D P I SA G +N + NM P L EA L + + ++ PL++ I +
Sbjct: 179 DIPFIPVSAFEG---DNVVKKSENM-PWYNGPTLLEA-LDNLKPPEKPTDKPLRIPIQDV 233
Query: 1130 EYS-SYLGKIGIGRILSGRIKSLQDVVIM 1157
YS S +G + +GR+ +G +K VV M
Sbjct: 234 -YSISGVGTVPVGRVETGVLKVGDKVVFM 261
|
Length = 425 |
| >gnl|CDD|206678 cd01891, TypA_BipA, Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 1e-18
Identities = 56/167 (33%), Positives = 76/167 (45%), Gaps = 24/167 (14%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAG----------------GITQHIGAYNVVTNH 115
+ I+ HVDHGKT+L+D + K + F E GIT I A N +
Sbjct: 5 IAIIAHVDHGKTTLVDALLKQSGTFRENEEVGERVMDSNDLERERGIT--ILAKNTAITY 62
Query: 116 GSITF--LDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIV 173
+DTPGH F R + D V+L+V A +G MPQTR + A +G+ IV
Sbjct: 63 KDTKINIIDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALEAGLKPIV 122
Query: 174 AINKIDKLDINLDRIK---QDLISEQVIPEEYGGASPFISISAKTGV 217
INKID+ D + + DL E +E P + SAK G
Sbjct: 123 VINKIDRPDARPEEVVDEVFDLFLELNATDEQLDF-PIVYASAKNGW 168
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. coli has been shown to be phosphorylated on a tyrosine residue, while BipA from Salmonella and from E. coli K12 strains is not phosphorylated under the conditions assayed. The phosphorylation apparently modifies the rate of nucleotide hydrolysis, with the phosphorylated form showing greatly increased GTPase activity. Length = 194 |
| >gnl|CDD|223128 COG0050, TufB, GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 3e-18
Identities = 83/303 (27%), Positives = 136/303 (44%), Gaps = 45/303 (14%)
Query: 928 IAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI---EKERGITIFSKNCSIEYNG 984
I HVDHGKTTL + + K A+ D + EK RGITI + + E
Sbjct: 18 IGHVDHGKTTLTAAI---TTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN 74
Query: 985 TRINIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPMPQTRFVTRKALKLGF 1038
+D PGHAD+ + +M+ D +L++ A +GPMPQTR A ++G
Sbjct: 75 RHYAHVDCPGHADY------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGV 128
Query: 1039 KPIVV-VNKIDRSNARP--EWVVDATFDLFDKLCATEEQLDF-----PVIYTSALHGYAN 1090
IVV +NK+D + E V +L + F P+I SAL A
Sbjct: 129 PYIVVFLNKVDMVDDEELLELVEMEVRELL-------SEYGFPGDDTPIIRGSALK--AL 179
Query: 1091 ENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKS 1150
E + + L +A+ Y+P + + + P + + + S G + GR+ G +K
Sbjct: 180 EGDAKWEAKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKV 239
Query: 1151 LQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--LITGI--EEICIGSTI 1206
++V I+ + + K + + +F R L++E +GD V L+ G+ E++ G +
Sbjct: 240 GEEVEIVGIKETQ--KTTVTGVEMF----RKLLDEGQAGDNVGVLLRGVKREDVERGQVL 293
Query: 1207 CDP 1209
P
Sbjct: 294 AKP 296
|
Length = 394 |
| >gnl|CDD|206674 cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 5e-18
Identities = 51/166 (30%), Positives = 69/166 (41%), Gaps = 21/166 (12%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKE-RGIT--IFSKNCSIEY 982
++ HVDHGKTTL+D + RK +N E GIT I + I+
Sbjct: 4 TVMGHVDHGKTTLLDKI-------RK----------TNVAAGEAGGITQHIGAYQVPIDV 46
Query: 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 1042
I IDTPGH F R S+ D +L++ A +G MPQT A IV
Sbjct: 47 KIPGITFIDTPGHEAFTNMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAANVPIIV 106
Query: 1043 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQL-DFPVIYTSALHG 1087
+NKID+ +L + EE D ++ SA G
Sbjct: 107 AINKIDKPYGTEADPERVKNELSELGLVGEEWGGDVSIVPISAKTG 152
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. Length = 169 |
| >gnl|CDD|237184 PRK12736, PRK12736, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 6e-18
Identities = 84/254 (33%), Positives = 109/254 (42%), Gaps = 69/254 (27%)
Query: 70 PIVTI--MGHVDHGKTSLLDYIRKTNVVFSEAG-------------------GIT---QH 105
P V I +GHVDHGKT+L I K V +E G GIT H
Sbjct: 11 PHVNIGTIGHVDHGKTTLTAAITK---VLAERGLNQAKDYDSIDAAPEEKERGITINTAH 67
Query: 106 IGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAK 165
+ Y H +D PGH + GA D +LVVAA DG MPQTRE I A+
Sbjct: 68 V-EYETEKRH--YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLAR 124
Query: 166 ISGVP-LIVAINKIDKLD----INLDRIK-QDLISEQVIPEEYGGASPFISISAKTGVGI 219
GVP L+V +NK+D +D + L ++ ++L+SE P G P I SA
Sbjct: 125 QVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP---GDDIPVIRGSAL----- 176
Query: 220 NKLLENISLQAE-ILELKAPVT----TPAKGVIIESRLDK-------------GKGPVAT 261
K LE + I+EL V TP E DK G+G V T
Sbjct: 177 -KALEGDPKWEDAIMELMDAVDEYIPTP------ERDTDKPFLMPVEDVFTITGRGTVVT 229
Query: 262 VLIQSGTLRCSDIV 275
++ GT++ D V
Sbjct: 230 GRVERGTVKVGDEV 243
|
Length = 394 |
| >gnl|CDD|129594 TIGR00503, prfC, peptide chain release factor 3 | Back alignment and domain information |
|---|
Score = 88.8 bits (220), Expect = 6e-18
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 8/141 (5%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINAR------IMDSNEIEKERGITIFSKNCS 979
AII+H D GKTT+ + +L G + + R D E+EK+RGI+I +
Sbjct: 15 AIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQ 74
Query: 980 IEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
Y +N++DTPGH DF + R L+ VDN L++IDA +G +TR + + +L
Sbjct: 75 FPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLM-EVTRLRDT 133
Query: 1040 PIVV-VNKIDRSNARPEWVVD 1059
PI +NK+DR P ++D
Sbjct: 134 PIFTFMNKLDRDIRDPLELLD 154
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus [Protein synthesis, Translation factors]. Length = 527 |
| >gnl|CDD|238772 cd01514, Elongation_Factor_C, Elongation factor G C-terminus | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 1e-17
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 1317 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFIT 1376
EP + + + E G ++ L+ R G++ +E RV ++ +P + GF + +
Sbjct: 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRS 60
Query: 1377 LTRGTGLISHVFEEYAP 1393
LT+G S F Y P
Sbjct: 61 LTQGRASFSMEFSHYEP 77
|
This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome. Tet(M) and Tet(O) mediate Tc resistance. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. Yeast Snu114p is essential for cell viability and for splicing in vivo. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. The function of LepA proteins is unknown. Length = 79 |
| >gnl|CDD|206670 cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1-alpha) protein family | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 1e-17
Identities = 60/209 (28%), Positives = 85/209 (40%), Gaps = 45/209 (21%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGT--------FRKN-QNIN------ARIMDSNEIEKERG 970
+I HVD GK+TL HLL + G + K + + A ++D + E+ERG
Sbjct: 3 VVIGHVDAGKSTLTGHLLYKLGGVDKRTIEKYEKEAKEMGKESFKYAWVLDKLKEERERG 62
Query: 971 ITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEG--- 1021
+TI E R IID PGH DF + +M+ D +L++ A +G
Sbjct: 63 VTIDVGLAKFETEKYRFTIIDAPGHRDF------VKNMITGASQADVAVLVVSARKGEFE 116
Query: 1022 ----PMPQTRFVTRKALKLGFKP-IVVVNKIDR-----SNARPEWVVDATFDLFDKLCAT 1071
QTR A LG K IV VNK+D S R + + K+
Sbjct: 117 AGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSQERYDEIKKKVSPFLKKVGYN 176
Query: 1072 EEQLDFPVIYTSALHGYANENSKARQGNM 1100
+ D P I S G +N + NM
Sbjct: 177 PK--DVPFIPISGFTG---DNLIEKSENM 200
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in yeast, and to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression. Length = 219 |
| >gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 2e-17
Identities = 65/267 (24%), Positives = 110/267 (41%), Gaps = 66/267 (24%)
Query: 1070 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP-------VHKDNSNN-- 1120
AT PV SAL + L +A++ Y+P V ++
Sbjct: 230 ATLAGEIVPVFCGSALKNKG----------VQRLLDAVVDYLPSPLEVPPVDGEDGEEGA 279
Query: 1121 --------PLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQI 1172
PL + ++GK+ + R+ SG +K + N K K ++ ++
Sbjct: 280 ELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSGTLKK--GDTLYNSGTGK--KERVGRL 335
Query: 1173 RVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVN 1232
G R V+EA++GDIV + +++ G T+CD P L + EP +
Sbjct: 336 YRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLCDKGDPILLEPMEFPEPVI------- 388
Query: 1233 NSPLAGREGKFITTRQIKNRLDHE-IKNNIG--------LRVTQNKHDDS---IYEVSGR 1280
LA I K++ D E + +G LRV +++ ++ I +SG
Sbjct: 389 --SLA------IEP---KDKGDEEKLSEALGKLAEEDPTLRVERDE--ETGQTI--LSGM 433
Query: 1281 GELHLTILIENMRRE-GYELSVSRPRV 1306
GELHL + +E ++RE G E+ P+V
Sbjct: 434 GELHLDVALERLKREYGVEVETGPPQV 460
|
Length = 668 |
| >gnl|CDD|225815 COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 2e-17
Identities = 66/228 (28%), Positives = 98/228 (42%), Gaps = 14/228 (6%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNV-VFSEAG--GITQHIGAYNVVTNHGSITFLDTPGHE 127
I+ GH+DHGKT+LL + E GIT +G Y G + F+D PGH
Sbjct: 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHP 61
Query: 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINLD 186
F + G D +LVVAAD+G+M QT E + + G+ I+ + K D++D
Sbjct: 62 DFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARI 121
Query: 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGV 246
K I + + SAKTG GI +L + E +E P +
Sbjct: 122 EQKIKQILADLSLAN----AKIFKTSAKTGRGIEELKNELIDLLEEIERD--EQKPFRIA 175
Query: 247 IIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYG---RIRSMLNEN 291
I + KG G V T + SG ++ D + R+RS+ +
Sbjct: 176 IDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLS-PINKEVRVRSIQAHD 222
|
Length = 447 |
| >gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 3e-17
Identities = 67/262 (25%), Positives = 117/262 (44%), Gaps = 47/262 (17%)
Query: 1070 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP----------------- 1112
T PV+ SA K Q PL +A++ Y+P
Sbjct: 246 GTIAGKIVPVLCGSAFKN------KGVQ----PLLDAVVDYLPSPLDVPPIKGDLDDEIE 295
Query: 1113 ---VHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKI 1169
+ K + PL + + ++GK+ R+ SG +KS +V+ N K K ++
Sbjct: 296 KAVLRKASDEGPLSALVFKIMTDPFVGKLTFVRVYSGTLKSGSEVL--NSTKGK--KERV 351
Query: 1170 NQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINF 1229
++ + G +R V+E +GDIV + G+++ G T+CD +KP L + EP +++
Sbjct: 352 GRLLLMHGNEREEVDEVPAGDIVALVGLKDATTGDTLCDENKPVILESMEFPEPVISV-- 409
Query: 1230 MVNNSPLAGRE-GKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTIL 1288
V P + K N+L E RV ++ + +SG GELHL I+
Sbjct: 410 AVE--PKTKADQEKLSEAL---NKLAEEDP---TFRVETDE-ETGETIISGMGELHLEII 460
Query: 1289 IENMRRE-GYELSVSRPRVIFK 1309
++ ++RE G E+ V +P+V ++
Sbjct: 461 VDRLKREFGVEVEVGKPQVAYR 482
|
Length = 697 |
| >gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 1e-16
Identities = 65/254 (25%), Positives = 111/254 (43%), Gaps = 47/254 (18%)
Query: 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD------------------NS 1118
PV++ SAL E PL +A++ Y+P + +
Sbjct: 253 VPVLFGSALKNIGIE----------PLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDP 302
Query: 1119 NNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNK-AKINQIRVFKG 1177
PL + ++Y Y GK+ R+ SG ++ + NG K K ++ R+ G
Sbjct: 303 EKPLLALVFKVQYDPYAGKLTYLRVYSGTLR--AGSQLYNGTGGKREKVGRL--FRLQ-G 357
Query: 1178 LDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPL- 1236
R V+ A +GDIV + G++E+ G T+ D + P L +L EP + P
Sbjct: 358 NKREEVDRAKAGDIVAVAGLKELETGDTLHDSADPVLLELLTFPEPV----VSLAVEPER 413
Query: 1237 AGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE- 1295
G E K + L+ + + LRV +++ +SG GELHL + +E +RRE
Sbjct: 414 RGDEQK------LAEALEKLVWEDPSLRVEEDEETGQTI-LSGMGELHLEVALERLRREF 466
Query: 1296 GYELSVSRPRVIFK 1309
E++ +P+V ++
Sbjct: 467 KLEVNTGKPQVAYR 480
|
Length = 687 |
| >gnl|CDD|206734 cd04171, SelB, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 1e-16
Identities = 52/169 (30%), Positives = 74/169 (43%), Gaps = 36/169 (21%)
Query: 930 HVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY----NGT 985
H+DHGKTTLI + + D EK+RGITI + Y +G
Sbjct: 7 HIDHGKTTLI-------------KALTGIETDRLPEEKKRGITI---DLGFAYLDLPDGK 50
Query: 986 RINIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
R+ ID PGH F + +M+ D VLL++ A EG MPQTR LG K
Sbjct: 51 RLGFIDVPGHEKF------VKNMLAGAGGIDAVLLVVAADEGIMPQTREHLEILELLGIK 104
Query: 1040 P-IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 1087
+VV+ K D + + ++ + L T D P+ S++ G
Sbjct: 105 KGLVVLTKADL--VDEDRLELVEEEILELLAGTFLA-DAPIFPVSSVTG 150
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains bacterial SelBs, as well as, one from archaea. Length = 170 |
| >gnl|CDD|224138 COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 2e-16
Identities = 50/129 (38%), Positives = 64/129 (49%), Gaps = 20/129 (15%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAG----------------GITQHIGAYN--VVT 113
+ I+ HVDHGKT+L+D + K + F E GIT I A N V
Sbjct: 8 IAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGIT--ILAKNTAVNY 65
Query: 114 NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIV 173
N I +DTPGH F R + D V+L+V A +G MPQTR + A G+ IV
Sbjct: 66 NGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIV 125
Query: 174 AINKIDKLD 182
INKID+ D
Sbjct: 126 VINKIDRPD 134
|
Length = 603 |
| >gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 2e-16
Identities = 77/270 (28%), Positives = 118/270 (43%), Gaps = 62/270 (22%)
Query: 72 VTIMGHVDHGKTSL---------------LDYIRKTNVVFSEAG---------------- 100
+ ++GHVDHGK++L ++ +R+ +
Sbjct: 9 LAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERER 68
Query: 101 GITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADD--GVMPQTR 158
G+T + T+ T +D PGH F GA D VLVVAADD GVMPQTR
Sbjct: 69 GVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTR 128
Query: 159 EAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVI---------PEEYGGASPF 208
E + A+ G+ LIVAINK+D ++ + R ++ + E+V P++ PF
Sbjct: 129 EHVFLARTLGINQLIVAINKMDAVNYDEKRYEE--VKEEVSKLLKMVGYKPDD----IPF 182
Query: 209 ISISAKTGVGINKLLENIS-------LQA--EILELKAPVTTPAKGVIIESRLDKGKGPV 259
I +SA G + K EN+ L+A + + P P + I + G G V
Sbjct: 183 IPVSAFEGDNVVKKSENMPWYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVYSISGVGTV 242
Query: 260 ATVLIQSGTLRCSDIVV---AGASYGRIRS 286
+++G L+ D VV AG G ++S
Sbjct: 243 PVGRVETGVLKVGDKVVFMPAGVV-GEVKS 271
|
Length = 425 |
| >gnl|CDD|206676 cd01889, SelB_euk, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 2e-16
Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 28/188 (14%)
Query: 72 VTIMGHVDHGKTSL---LDYIRKTNVV----FSEAGGITQHIG--------AYNVVTNHG 116
V ++GHVD GKTSL L I T S+ GIT +G ++ N
Sbjct: 3 VGLLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFEVDKPKHLEDNEN 62
Query: 117 S------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP 170
IT +D PGH + GA++ D+++LVV A G+ QT E + ++ P
Sbjct: 63 PQIENYQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDAKKGIQTQTAECLVIGELLCKP 122
Query: 171 LIVAINKIDKLDIN-----LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLEN 225
LIV +NKID + ++++K+ L ++ + + SP I +SAK G G +L
Sbjct: 123 LIVVLNKIDLIPEEERKRKIEKMKKRL--QKTLEKTRLKDSPIIPVSAKPGEGEAELGGE 180
Query: 226 ISLQAEIL 233
+ +
Sbjct: 181 LKNLIVLP 188
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains eukaryotic SelBs and some from archaea. Length = 192 |
| >gnl|CDD|233394 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 3e-16
Identities = 48/135 (35%), Positives = 66/135 (48%), Gaps = 20/135 (14%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAG----------------GITQHIGAYNV-VTN 114
+ I+ HVDHGKT+L+D + K + F GIT I A N +
Sbjct: 4 IAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGIT--ILAKNTAIRY 61
Query: 115 HGS-ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIV 173
+G+ I +DTPGH F R + D V+L+V A +G MPQTR + A G+ IV
Sbjct: 62 NGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIV 121
Query: 174 AINKIDKLDINLDRI 188
INKID+ D +
Sbjct: 122 VINKIDRPSARPDEV 136
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown [Regulatory functions, Other, Cellular processes, Adaptations to atypical conditions, Protein synthesis, Translation factors]. Length = 594 |
| >gnl|CDD|223128 COG0050, TufB, GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 4e-16
Identities = 75/241 (31%), Positives = 110/241 (45%), Gaps = 46/241 (19%)
Query: 71 IVTIMGHVDHGKTSL----------------LDYIRKTNVVFSEAGGIT---QHIGAYNV 111
+ TI GHVDHGKT+L Y + N +A GIT H+ Y
Sbjct: 15 VGTI-GHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHV-EYET 72
Query: 112 VTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP- 170
H + +D PGH + GA D +LVVAA DG MPQTRE I A+ GVP
Sbjct: 73 ANRHYA--HVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPY 130
Query: 171 LIVAINKIDKLDINLDRIKQDLISEQV--IPEEY---GGASPFISISA-KTGVGINKLLE 224
++V +NK+D +D D +L+ +V + EY G +P I SA K G K
Sbjct: 131 IVVFLNKVDMVD---DEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEA 187
Query: 225 NISLQAEILE-LKAPVTTPAKGVI------IES--RLDKGKGPVATVLIQSGTLRCSDIV 275
I E+++ + + + TP + + +E + G+G V T ++ G L+ + V
Sbjct: 188 KIE---ELMDAVDSYIPTPERDIDKPFLMPVEDVFSIS-GRGTVVTGRVERGILKVGEEV 243
Query: 276 V 276
Sbjct: 244 E 244
|
Length = 394 |
| >gnl|CDD|206671 cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-binding proteins | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 8e-16
Identities = 58/187 (31%), Positives = 85/187 (45%), Gaps = 41/187 (21%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAG-------------------GIT---QHIGA 108
+ TI GHVDHGKT+L I K V ++ G GIT H+
Sbjct: 5 VGTI-GHVDHGKTTLTAAITK---VLAKKGGAKAKKYDEIDKAPEEKARGITINTAHVE- 59
Query: 109 YNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISG 168
Y H + D PGH + GA D +LVV+A DG MPQTRE + A+ G
Sbjct: 60 YETANRHYAHV--DCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVG 117
Query: 169 VP-LIVAINKIDKLDIN--LDRIKQDLISEQVIPEEYGG-ASPFISISA-------KTGV 217
VP ++V +NK D +D L+ ++ + + E + + G +P + SA
Sbjct: 118 VPYIVVFLNKADMVDDEELLELVEME-VRELLSKYGFDGDDTPIVRGSALKALEGDDPNK 176
Query: 218 GINKLLE 224
++K+LE
Sbjct: 177 WVDKILE 183
|
EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. Length = 195 |
| >gnl|CDD|225448 COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 9e-16
Identities = 89/321 (27%), Positives = 137/321 (42%), Gaps = 64/321 (19%)
Query: 930 HVDHGKTTLIDHLLRQSGTFRKNQ-----NINAR------------IMDSNEIEKERGIT 972
VD GK+TLI LL + ++Q + R ++D E E+E+GIT
Sbjct: 14 SVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGIT 73
Query: 973 I------FS--KNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP 1024
I FS K I I DTPGH + + S D +LL+DA +G +
Sbjct: 74 IDVAYRYFSTEKRKFI--------IADTPGHEQYTRNMATGASTADLAILLVDARKGVLE 125
Query: 1025 QTRFVTRKALKLGFKPIVV-VNKID---RSNARPEWVVDATFDLFDKLCATEEQLDFPVI 1080
QTR + A LG + +VV VNK+D S E +V +L + + I
Sbjct: 126 QTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVR----FI 181
Query: 1081 YTSALHGYANENSKARQGNMIPLFE-----AILKYVPVHKDNSNNPLQL--QIISLEYSS 1133
SAL G +N ++ NM P ++ IL+ V + D S + Q ++
Sbjct: 182 PISALLG---DNVVSKSENM-PWYKGPTLLEILETVEIADDRSAKAFRFPVQYVNRPNLD 237
Query: 1134 YLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL 1193
+ G G I SG +K +VV++ P K +++ +I F G + +A +G+ V
Sbjct: 238 FRGY--AGTIASGSVKVGDEVVVL--PSGK--TSRVKRIVTFDG----ELAQASAGEAVT 287
Query: 1194 ITGIEEICI--GSTICDPSKP 1212
+ +EI I G I P
Sbjct: 288 LVLADEIDISRGDLIVAADAP 308
|
Length = 431 |
| >gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 1e-15
Identities = 80/288 (27%), Positives = 126/288 (43%), Gaps = 58/288 (20%)
Query: 74 IMGHVDHGKTSLLD-YIRKTNVV--------------FSEAGGITQHIGAYNV----VTN 114
I+ H+DHGK++L D + T + GIT I A V
Sbjct: 8 IIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGIT--IKAQAVRLNYKAK 65
Query: 115 HGS---ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKIS---G 168
G + +DTPGH F+ +R + +L+V A G+ QT +A+ ++
Sbjct: 66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQT---LANVYLALEND 122
Query: 169 VPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISL 228
+ +I INKID + +R+K+++ E+VI + AS I SAKTG+GI ++LE I
Sbjct: 123 LEIIPVINKIDLPSADPERVKKEI--EEVIGLD---ASEAILASAKTGIGIEEILEAI-- 175
Query: 229 QAEILELKAP---VTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIR 285
+ + P P K +I +S D +G VA V + GT++ D +IR
Sbjct: 176 ---VKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGD---------KIR 223
Query: 286 SMLNENGKNILEAGPSIPVEIQGLTKVPF--SGEELFVILNEKKAREI 331
M + E G P LTK +GE ++I K ++
Sbjct: 224 FMSTGKEYEVDEVGVFTP----KLTKTDELSAGEVGYIIAGIKDVSDV 267
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown [Unknown function, General]. Length = 595 |
| >gnl|CDD|177010 CHL00071, tufA, elongation factor Tu | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 1e-15
Identities = 90/301 (29%), Positives = 135/301 (44%), Gaps = 55/301 (18%)
Query: 928 IAHVDHGKTTL---IDHLLRQSGT--FRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 982
I HVDHGKTTL I L G +K I DS EK RGITI + + E
Sbjct: 18 IGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEI-----DSAPEEKARGITINTAHVEYET 72
Query: 983 NGTRINIIDTPGHADFGGEVERILSM------VDNVLLLIDAVEGPMPQTRFVTRKALKL 1036
+D PGHAD+ + +M +D +L++ A +GPMPQT+ A ++
Sbjct: 73 ENRHYAHVDCPGHADY------VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV 126
Query: 1037 GFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATE--EQLDF-----PVIYTSALHG- 1087
G IVV +NK D+ V D +L E + DF P++ SAL
Sbjct: 127 GVPNIVVFLNKEDQ-------VDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLAL 179
Query: 1088 -YANENSKARQGN------MIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGI 1140
EN K ++G + L +A+ Y+P + +++ P + I + + G +
Sbjct: 180 EALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVAT 239
Query: 1141 GRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVF-KGLDRVLVNEALSGDIV--LITGI 1197
GRI G +K + D V + G + + + +F K LD E L+GD V L+ GI
Sbjct: 240 GRIERGTVK-VGDTVEIVGLRETKT-TTVTGLEMFQKTLD-----EGLAGDNVGILLRGI 292
Query: 1198 E 1198
+
Sbjct: 293 Q 293
|
Length = 409 |
| >gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-15
Identities = 73/293 (24%), Positives = 118/293 (40%), Gaps = 58/293 (19%)
Query: 75 MGHVDHGKTSLLDY------------IRKTNVVFSEAG-------------------GIT 103
+GHVD GK++L+ + K E G G+T
Sbjct: 13 IGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVT 72
Query: 104 QHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG-------VMPQ 156
+ T+ + T +D PGH F GA D+ VLVV A DG V Q
Sbjct: 73 IDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQ 132
Query: 157 TREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIP--EEYG---GASPFIS 210
TRE A+ G+ LIVA+NK+D ++ D + + I +V + G PFI
Sbjct: 133 TREHAFLARTLGIKQLIVAVNKMD--LVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIP 190
Query: 211 ISAKTGVGINKLLENI------SLQAEILELKAP---VTTPAKGVIIESRLDKGKGPVAT 261
IS G + K EN+ +L + +L+ P + P + I + G G V
Sbjct: 191 ISGFKGDNLTKKSENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDVYSISGIGTVPV 250
Query: 262 VLIQSGTLRCSDIVVAGASY--GRIRS-MLNENGKNILEAGPSIPVEIQGLTK 311
++SG ++ V + G ++S ++ + E G ++ ++G+ K
Sbjct: 251 GRVESGVIKPGQKVTFMPAGVVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEK 303
|
Length = 428 |
| >gnl|CDD|237184 PRK12736, PRK12736, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 3e-15
Identities = 92/311 (29%), Positives = 148/311 (47%), Gaps = 61/311 (19%)
Query: 928 IAHVDHGKTTL---IDHLL--RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCS-IE 981
I HVDHGKTTL I +L R + +I D+ EKERGITI N + +E
Sbjct: 18 IGHVDHGKTTLTAAITKVLAERGLNQAKDYDSI-----DAAPEEKERGITI---NTAHVE 69
Query: 982 YN-GTR-INIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPMPQTRFVTRKA 1033
Y R +D PGHAD+ + +M+ D +L++ A +GPMPQTR A
Sbjct: 70 YETEKRHYAHVDCPGHADY------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLA 123
Query: 1034 LKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATE--EQL--------DFPVIYT 1082
++G +VV +NK+D +VD +L + L E E L D PVI
Sbjct: 124 RQVGVPYLVVFLNKVD--------LVDDE-ELLE-LVEMEVRELLSEYDFPGDDIPVIRG 173
Query: 1083 SALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGR 1142
SAL A E + ++ L +A+ +Y+P + +++ P + + + + G + GR
Sbjct: 174 SALK--ALEGDPKWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGR 231
Query: 1143 ILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--LITGI--E 1198
+ G +K +V I+ + + K + + +F R L++E +GD V L+ G+ +
Sbjct: 232 VERGTVKVGDEVEIVGIKETQ--KTVVTGVEMF----RKLLDEGQAGDNVGVLLRGVDRD 285
Query: 1199 EICIGSTICDP 1209
E+ G + P
Sbjct: 286 EVERGQVLAKP 296
|
Length = 394 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 3e-15
Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Query: 74 IMGHVDHGKTSLLDYIRKTNVVF-SEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFT 130
++G GK+SLL+ + V S+ G T+ Y + G + +DTPG + F
Sbjct: 2 VVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFG 61
Query: 131 AMRARG-----AKVTDIVVLVVAADDGVMPQTREAIAHAKIS--GVPLIVAINKIDKLDI 183
+ + D+++LVV + D + + + ++ G+P+I+ NKID L+
Sbjct: 62 GLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIPIILVGNKIDLLEE 121
Query: 184 NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
L I P +SAKTG G+++L E +
Sbjct: 122 REVEELLRLEELAKILGV-----PVFEVSAKTGEGVDELFEKL 159
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|129576 TIGR00485, EF-Tu, translation elongation factor TU | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 6e-15
Identities = 82/250 (32%), Positives = 108/250 (43%), Gaps = 66/250 (26%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAG------------------GIT---QHIGAY 109
I TI GHVDHGKT+L I T V+ E G GIT H+ Y
Sbjct: 15 IGTI-GHVDHGKTTLTAAI--TTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHV-EY 70
Query: 110 NVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGV 169
H +D PGH + GA D +LVV+A DG MPQTRE I A+ GV
Sbjct: 71 ETENRH--YAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGV 128
Query: 170 P-LIVAINKIDKLDINLDRIKQDLISEQV--IPEEY---GGASPFISISAKTGVGINKLL 223
P ++V +NK D +D D +L+ +V + EY G +P I SA K L
Sbjct: 129 PYIVVFLNKCDMVD---DEELLELVEMEVRELLSEYDFPGDDTPIIRGSAL------KAL 179
Query: 224 ENISL-QAEILELKAPVT----TPAKGVIIESRLDK-------------GKGPVATVLIQ 265
E + +A+ILEL V TP E DK G+G V T ++
Sbjct: 180 EGDAEWEAKILELMDAVDEYIPTP------ERETDKPFLMPIEDVFSITGRGTVVTGRVE 233
Query: 266 SGTLRCSDIV 275
G ++ + V
Sbjct: 234 RGIVKVGEEV 243
|
This model models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation [Protein synthesis, Translation factors]. Length = 394 |
| >gnl|CDD|215592 PLN03126, PLN03126, Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (194), Expect = 8e-15
Identities = 76/287 (26%), Positives = 137/287 (47%), Gaps = 19/287 (6%)
Query: 928 IAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRI 987
I HVDHGKTTL L + + +D+ E+ RGITI + E
Sbjct: 87 IGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHY 146
Query: 988 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV-VNK 1046
+D PGHAD+ + + +D +L++ +GPMPQT+ A ++G +VV +NK
Sbjct: 147 AHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK 206
Query: 1047 IDRSNARPEWVVDATFDLFDKLCATE-EQLDFPVIYTSALHGYAN--ENSKARQGN---- 1099
D+ + E + ++ + L + E D P+I SAL EN ++G+
Sbjct: 207 QDQVDDE-ELLELVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWV 265
Query: 1100 --MIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 1157
+ L +A+ Y+P+ + ++ P L + + + G + GR+ G +K + + V +
Sbjct: 266 DKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVK-VGETVDI 324
Query: 1158 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--LITGIEEICI 1202
G + + + + +F+ +++EAL+GD V L+ GI++ I
Sbjct: 325 VGLRETRS-TTVTGVEMFQK----ILDEALAGDNVGLLLRGIQKADI 366
|
Length = 478 |
| >gnl|CDD|223557 COG0481, LepA, Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 2e-14
Identities = 83/285 (29%), Positives = 125/285 (43%), Gaps = 52/285 (18%)
Query: 74 IMGHVDHGKTSLLDYIRKTNVVFSEAG---------------GITQHIGAYNV----VTN 114
I+ H+DHGK++L D + + SE GIT I A V
Sbjct: 14 IIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGIT--IKAQAVRLNYKAK 71
Query: 115 HGS---ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKIS---G 168
G + +DTPGH F+ +R + +LVV A GV QT +A+ ++
Sbjct: 72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQT---LANVYLALENN 128
Query: 169 VPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISL 228
+ +I +NKID + +R+KQ++ E +I + AS + +SAKTG+GI +LE I
Sbjct: 129 LEIIPVLNKIDLPAADPERVKQEI--EDIIGID---ASDAVLVSAKTGIGIEDVLEAIV- 182
Query: 229 QAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSML 288
+I K P K +I +S D G V V I GTL+ D +IR M
Sbjct: 183 -EKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGD---------KIRMMS 232
Query: 289 NENGKNILEAGPSIP--VEIQGLTKVPFSGEELFVILNEKKAREI 331
+ E G P V++ L +GE ++I K R+
Sbjct: 233 TGKEYEVDEVGIFTPKMVKVDELK----AGEVGYIIAGIKDVRDA 273
|
Length = 603 |
| >gnl|CDD|234596 PRK00049, PRK00049, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 4e-14
Identities = 50/135 (37%), Positives = 65/135 (48%), Gaps = 30/135 (22%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAG-------------------GIT---QHIGA 108
+ TI GHVDHGKT+L I K V ++ G GIT H+
Sbjct: 15 VGTI-GHVDHGKTTLTAAITK---VLAKKGGAEAKAYDQIDKAPEEKARGITINTAHV-E 69
Query: 109 YNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISG 168
Y H + +D PGH + GA D +LVV+A DG MPQTRE I A+ G
Sbjct: 70 YETEKRHYA--HVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 169 VP-LIVAINKIDKLD 182
VP ++V +NK D +D
Sbjct: 128 VPYIVVFLNKCDMVD 142
|
Length = 396 |
| >gnl|CDD|211860 TIGR03680, eif2g_arch, translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 5e-14
Identities = 65/223 (29%), Positives = 98/223 (43%), Gaps = 50/223 (22%)
Query: 68 RAPIVTI--MGHVDHGKTSLLDYIRKTNV---VFSEA--GGITQHIG------------- 107
R P V I +GHVDHGKT+L + T V SE GI+ +G
Sbjct: 1 RQPEVNIGMVGHVDHGKTTLTKAL--TGVWTDTHSEELKRGISIRLGYADAEIYKCPECD 58
Query: 108 ---AYNV---VTNHGS-------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV- 153
Y N GS ++F+D PGHE A GA + D +LV+AA++
Sbjct: 59 GPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCP 118
Query: 154 MPQTREAIAHAKISGVP-LIVAINKIDKLDI-----NLDRIKQDLISEQVIPEEYGGASP 207
PQTRE + +I G+ +++ NKID + N + IK+ + + I E +P
Sbjct: 119 QPQTREHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEFV--KGTIAEN----AP 172
Query: 208 FISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIES 250
I +SA I+ LLE +++ I + + P + S
Sbjct: 173 IIPVSALHNANIDALLE--AIEKFIPTPERDLDKPPLMYVARS 213
|
This model represents the archaeal translation initiation factor 2 subunit gamma and is found in all known archaea. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Length = 406 |
| >gnl|CDD|206677 cd01890, LepA, LepA also known as Elongation Factor 4 (EF4) | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 6e-14
Identities = 56/180 (31%), Positives = 81/180 (45%), Gaps = 39/180 (21%)
Query: 74 IMGHVDHGKTSLLD-YIRKTNVVFSEAG--------------GITQHIGAYNVVTNHGSI 118
I+ H+DHGK++L D + T V GIT I A V + +
Sbjct: 5 IIAHIDHGKSTLADRLLELTGTVSEREMKEQVLDSMDLERERGIT--IKAQAVRLFYKAK 62
Query: 119 T-------FLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAH---AKISG 168
+DTPGH F+ +R + +LVV A GV QT +A+ A +
Sbjct: 63 DGEEYLLNLIDTPGHVDFSYEVSRSLAACEGALLVVDATQGVEAQT---LANFYLALENN 119
Query: 169 VPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPF--ISISAKTGVGINKLLENI 226
+ +I INKID + DR+KQ++ E+ G I +SAKTG+G+ LLE I
Sbjct: 120 LEIIPVINKIDLPAADPDRVKQEI-------EDVLGLDASEAILVSAKTGLGVEDLLEAI 172
|
LepA (also known as elongation factor 4, EF4) belongs to the GTPase family and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. Length = 179 |
| >gnl|CDD|206731 cd04168, TetM_like, Tet(M)-like family includes Tet(M), Tet(O), Tet(W), and OtrA, containing tetracycline resistant proteins | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-13
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 24/175 (13%)
Query: 74 IMGHVDHGKTSLLDYIRKTNVVFSEAG------------------GITQHIGAYNVVTNH 115
I+ HVD GKT+L + + T+ E G GIT +
Sbjct: 4 ILAHVDAGKTTLTESLLYTSGAIRELGSVDKGTTRTDSMELERQRGITIFSAVASFQWED 63
Query: 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHA-KISGVPLIVA 174
+ +DTPGH F A R V D +LV++A +GV QTR + + +P I+
Sbjct: 64 TKVNIIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTR-ILFRLLRKLNIPTIIF 122
Query: 175 INKIDKLDINLDRIKQDL---ISEQVIPEEYGGASPFISISAKTGVG-INKLLEN 225
+NKID+ +L+++ Q++ +S ++P + G P I + I + E
Sbjct: 123 VNKIDRAGADLEKVYQEIKEKLSPDIVPMQKVGLYPNICDTNNIDDEQIETVAEG 177
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. Length = 237 |
| >gnl|CDD|183708 PRK12735, PRK12735, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 1e-13
Identities = 50/135 (37%), Positives = 65/135 (48%), Gaps = 30/135 (22%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAG-------------------GIT---QHIGA 108
+ TI GHVDHGKT+L I K V ++ G GIT H+
Sbjct: 15 VGTI-GHVDHGKTTLTAAITK---VLAKKGGGEAKAYDQIDNAPEEKARGITINTSHV-E 69
Query: 109 YNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISG 168
Y H + +D PGH + GA D +LVV+A DG MPQTRE I A+ G
Sbjct: 70 YETANRHYA--HVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127
Query: 169 VP-LIVAINKIDKLD 182
VP ++V +NK D +D
Sbjct: 128 VPYIVVFLNKCDMVD 142
|
Length = 396 |
| >gnl|CDD|183708 PRK12735, PRK12735, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 1e-13
Identities = 92/311 (29%), Positives = 142/311 (45%), Gaps = 59/311 (18%)
Query: 928 IAHVDHGKTTL---IDHLLRQSG--TFRKNQNINARIMDSNEIEKERGITIFSKNCS-IE 981
I HVDHGKTTL I +L + G + I D+ EK RGITI N S +E
Sbjct: 18 IGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQI-----DNAPEEKARGITI---NTSHVE 69
Query: 982 YNGTRINI--IDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPMPQTRFVTRKA 1033
Y + +D PGHAD+ + +M+ D +L++ A +GPMPQTR A
Sbjct: 70 YETANRHYAHVDCPGHADY------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLA 123
Query: 1034 LKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATE--EQL--------DFPVIYT 1082
++G IVV +NK D V D +L + L E E L D P+I
Sbjct: 124 RQVGVPYIVVFLNKCDM-------VDDE--ELLE-LVEMEVRELLSKYDFPGDDTPIIRG 173
Query: 1083 SALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGR 1142
SAL ++ + + ++ L +A+ Y+P + + P + I + S G + GR
Sbjct: 174 SALKALEGDDDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGR 233
Query: 1143 ILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--LITGI--E 1198
+ G +K +V I+ G + K + + +F R L++E +GD V L+ G E
Sbjct: 234 VERGIVKVGDEVEIV-GIKE-TQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGTKRE 287
Query: 1199 EICIGSTICDP 1209
++ G + P
Sbjct: 288 DVERGQVLAKP 298
|
Length = 396 |
| >gnl|CDD|227582 COG5257, GCD11, Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 1e-13
Identities = 71/257 (27%), Positives = 109/257 (42%), Gaps = 54/257 (21%)
Query: 63 AESLVRAPIVTI--MGHVDHGKTSLLDYIRKTNVV-FSEA--GGITQHIG---------- 107
A+ P V I +GHVDHGKT+L + SE GIT +G
Sbjct: 2 ADPKHIQPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCP 61
Query: 108 ---AYNVVT------NHGS-------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADD 151
T N G+ ++F+D PGHE A GA + D +LV+AA++
Sbjct: 62 ECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANE 121
Query: 152 GV-MPQTREAIAHAKISGVP-LIVAINKID-----KLDINLDRIKQDLISEQVIPEEYGG 204
PQTRE + +I G+ +I+ NKID + N ++IK+ + + + E
Sbjct: 122 PCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFV--KGTVAEN--- 176
Query: 205 ASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIES--------RLDKGK 256
+P I ISA+ I+ L+E I + I + + P + + S ++ K
Sbjct: 177 -APIIPISAQHKANIDALIEAI--EKYIPTPERDLDKPPRMYVARSFDVNKPGTPPEELK 233
Query: 257 GPVATVLIQSGTLRCSD 273
G V + G LR D
Sbjct: 234 GGVIGGSLVQGVLRVGD 250
|
Length = 415 |
| >gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 2e-13
Identities = 44/139 (31%), Positives = 58/139 (41%), Gaps = 24/139 (17%)
Query: 75 MGHVDHGKTSLLDYI--------RKTNVVFSEAG-------------GITQHIGAYNVVT 113
+GH GKT+L + I R V E G GI+ A
Sbjct: 1 VGHSGAGKTTLTEAILFYTGAIHRIGEV---EDGTTTMDFMPEERERGISITSAATTCEW 57
Query: 114 NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIV 173
I +DTPGH FT R +V D V+VV A GV PQT A+ GVP I+
Sbjct: 58 KGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRII 117
Query: 174 AINKIDKLDINLDRIKQDL 192
+NK+D+ + R+ L
Sbjct: 118 FVNKMDRAGADFFRVLAQL 136
|
Length = 668 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 2e-13
Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 27/168 (16%)
Query: 74 IMGHVDHGKTSLL-----DYIRKTNVVFSEAGGITQHIGAYNVVTNH-GSITFLDTPG-H 126
I G + GK+SLL + S G T+ G + +DTPG
Sbjct: 2 IFGRPNVGKSSLLNALLGQNVGIV----SPIPGTTRDPVRKEWELLPLGPVVLIDTPGLD 57
Query: 127 EAFTAMRARG------AKVTDIVVLVVAADDGVMPQTREAIAHAKI--SGVPLIVAINKI 178
E R R A D+V+LVV +D + E + G P+++ +NKI
Sbjct: 58 EEGGLGRERVEEARQVADRADLVLLVVDSD---LTPVEEEAKLGLLRERGKPVLLVLNKI 114
Query: 179 DKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
D + + + +++P+ P I++SA G GI++L + I
Sbjct: 115 DLVPESEEEELLRERKLELLPDL-----PVIAVSALPGEGIDELRKKI 157
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 3e-13
Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 37/141 (26%)
Query: 923 IKSAIIAHVDHGKTTLIDHLL--------RQSGTFRKNQNINARIMDSNEIEKERGITIF 974
IK I+ + GK+TL++ LL + GT R + +E G T
Sbjct: 2 IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTR---------NYVTTVIEEDGKTY- 51
Query: 975 SKNCSIEYNGTRINIIDTPGHADF-------GGEVERILSMVDNVLLLIDAVEGPMPQTR 1027
+ N++DT G D+ VE L + D V+L++D E QT+
Sbjct: 52 -----------KFNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTK 100
Query: 1028 FVTRKALKLGFKPIVVVNKID 1048
+ + G I+V NKID
Sbjct: 101 EIIH-HAESGVPIILVGNKID 120
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|178673 PLN03127, PLN03127, Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 3e-13
Identities = 50/134 (37%), Positives = 64/134 (47%), Gaps = 29/134 (21%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAG-------------------GIT---QHIGAY 109
V +GHVDHGKT+L I K V +E G GIT H+ Y
Sbjct: 64 VGTIGHVDHGKTTLTAAITK---VLAEEGKAKAVAFDEIDKAPEEKARGITIATAHV-EY 119
Query: 110 NVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGV 169
H +D PGH + GA D +LVV+A DG MPQT+E I A+ GV
Sbjct: 120 ETAKRH--YAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGV 177
Query: 170 P-LIVAINKIDKLD 182
P L+V +NK+D +D
Sbjct: 178 PSLVVFLNKVDVVD 191
|
Length = 447 |
| >gnl|CDD|206730 cd04167, Snu114p, Snu114p, a spliceosome protein, is a GTPase | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 4e-13
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 24/138 (17%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAY----------------NVVT-- 113
V I GH+ HGKTSLLD + + + + + Y N ++
Sbjct: 3 VCIAGHLHHGKTSLLDMLIEQTHKRTPSVKLGWKPLRYTDTRKDEQERGISIKSNPISLV 62
Query: 114 ----NHGS--ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKIS 167
S I +DTPGH F A ++ D VVLVV +G+ T I HA
Sbjct: 63 LEDSKGKSYLINIIDTPGHVNFMDEVAAALRLCDGVVLVVDVVEGLTSVTERLIRHAIQE 122
Query: 168 GVPLIVAINKIDKLDINL 185
G+P+++ INKID+L + L
Sbjct: 123 GLPMVLVINKIDRLILEL 140
|
Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. Length = 213 |
| >gnl|CDD|206670 cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1-alpha) protein family | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 4e-13
Identities = 63/199 (31%), Positives = 84/199 (42%), Gaps = 45/199 (22%)
Query: 71 IVTIMGHVDHGKTSL---LDY---------IRKTNVVFSEAG------------------ 100
+V I GHVD GK++L L Y I K E G
Sbjct: 2 LVVI-GHVDAGKSTLTGHLLYKLGGVDKRTIEKYEKEAKEMGKESFKYAWVLDKLKEERE 60
Query: 101 -GITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG------- 152
G+T +G T T +D PGH F GA D+ VLVV+A G
Sbjct: 61 RGVTIDVGLAKFETEKYRFTIIDAPGHRDFVKNMITGASQADVAVLVVSARKGEFEAGFE 120
Query: 153 VMPQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIP--EEYGGAS--- 206
QTRE A+ GV LIVA+NK+D + +N + + D I ++V P ++ G
Sbjct: 121 KGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSQERYDEIKKKVSPFLKKVGYNPKDV 180
Query: 207 PFISISAKTGVGINKLLEN 225
PFI IS TG + + EN
Sbjct: 181 PFIPISGFTGDNLIEKSEN 199
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in yeast, and to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression. Length = 219 |
| >gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 5e-13
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 24/142 (16%)
Query: 72 VTIMGHVDHGKTSLLDYI--------RKTNVVFSEAG-------------GITQHIGAYN 110
+ I+ H+D GKT+L + I + V E G GIT A +
Sbjct: 11 IGILAHIDAGKTTLTERILFYTGKIHKMGEV---EDGTTVTDWMPQEQERGITIESAATS 67
Query: 111 VVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP 170
++ I +DTPGH FT R +V D V+V A GV PQT A G+P
Sbjct: 68 CDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIP 127
Query: 171 LIVAINKIDKLDINLDRIKQDL 192
++ INK+D++ +L ++ +D+
Sbjct: 128 RLIFINKMDRVGADLFKVLEDI 149
|
Length = 687 |
| >gnl|CDD|206672 cd01885, EF2, Elongation Factor 2 (EF2) in archaea and eukarya | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 6e-13
Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 29/141 (20%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSE--AG--------------GITQHIGAYNVVTNH 115
+ I+ HVDHGKT+L D + + + SE AG GIT I + +
Sbjct: 3 ICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYLDTREDEQERGIT--IKSSAISLYF 60
Query: 116 G-----------SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHA 164
I +D+PGH F++ ++TD ++VV A +GV QT + A
Sbjct: 61 EYEEEKMDGNDYLINLIDSPGHVDFSSEVTAALRLTDGALVVVDAVEGVCVQTETVLRQA 120
Query: 165 KISGVPLIVAINKIDKLDINL 185
V ++ INKID+L + L
Sbjct: 121 LEERVKPVLVINKIDRLILEL 141
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Second, the protein can be post-translationally modified by ADP-ribosylation. Various bacterial toxins perform this reaction after modification of a specific histidine residue to diphthamide, but there is evidence for endogenous ADP ribosylase activity. Similar to the bacterial toxins, it is presumed that modification by the endogenous enzyme also inhibits eEF2 activity. Length = 218 |
| >gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 6e-13
Identities = 46/127 (36%), Positives = 54/127 (42%), Gaps = 14/127 (11%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
A HVDHGKTTL+ L I A D EK+RG+TI
Sbjct: 4 ATAGHVDHGKTTLLKAL----------TGIAA---DRLPEEKKRGMTIDLGFAYFPLPDY 50
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVV 1044
R+ ID PGH F +D LL++DA EG M QT LG IVV+
Sbjct: 51 RLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVI 110
Query: 1045 NKIDRSN 1051
K DR N
Sbjct: 111 TKADRVN 117
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes [Protein synthesis, Translation factors]. Length = 581 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 7e-13
Identities = 39/191 (20%), Positives = 75/191 (39%), Gaps = 37/191 (19%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
++ GK++L++ LL S+ R ++ K ++
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEV-----------SDVPGTTRDPDVYVK--ELDKGKV 47
Query: 986 RINIIDTPGHADFGG-----EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALKLGFK 1039
++ ++DTPG +FGG +L D +LL++D+ + + + + + L+
Sbjct: 48 KLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGI 107
Query: 1040 PIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQG 1098
PI++V NKID R + +L + L PV SA G
Sbjct: 108 PIILVGNKIDLLEEREVEELLRLEEL-------AKILGVPVFEVSAKTGE---------- 150
Query: 1099 NMIPLFEAILK 1109
+ LFE +++
Sbjct: 151 GVDELFEKLIE 161
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|184345 PRK13818, PRK13818, ribosome-binding factor A; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 9e-13
Identities = 36/109 (33%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Query: 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISI-KNI 599
R+ R+E +I R++++I+ +I++P ++ +TIT V+ T D SYA ++++ +D + K +
Sbjct: 4 RIGRVEGEILRELTKILRKNIRDPRLSDVTITAVECTNDLSYATVYYSLLTEDEAKEKEV 63
Query: 600 LDNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAMMISKLIDGIK 648
+ L KAK +R L + L ++ +P L F DNS+ I +LI +K
Sbjct: 64 QEGLEKAKGMMRHLLGQTLTVYKVPELIFKRDNSVAYGSKIDRLIAEVK 112
|
Length = 121 |
| >gnl|CDD|206729 cd04166, CysN_ATPS, CysN, together with protein CysD, forms the ATP sulfurylase (ATPS) complex | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 60/206 (29%), Positives = 86/206 (41%), Gaps = 57/206 (27%)
Query: 930 HVDHGKTTLIDHLLRQSG----------TFRKNQNINAR------IMDSNEIEKERGITI 973
VD GK+TLI LL S K+ ++D + E+E+GITI
Sbjct: 7 SVDDGKSTLIGRLLYDSKSIFEDQLAALERSKSSGTQGEKLDLALLVDGLQAEREQGITI 66
Query: 974 ------FS--KNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQ 1025
FS K I I DTPGH + + S D +LL+DA +G + Q
Sbjct: 67 DVAYRYFSTPKRKFI--------IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ 118
Query: 1026 TR---FVTRKALKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCA----TEEQLDF 1077
TR ++ LG + +VV VNK+D +VD ++F+++ A L
Sbjct: 119 TRRHSYIAS---LLGIRHVVVAVNKMD--------LVDYDEEVFEEIKADYLAFAASLGI 167
Query: 1078 PVIY---TSALHGYANENSKARQGNM 1100
I SAL G +N +R NM
Sbjct: 168 EDITFIPISALEG---DNVVSRSENM 190
|
CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. Length = 209 |
| >gnl|CDD|172345 PRK13815, PRK13815, ribosome-binding factor A; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-12
Identities = 36/108 (33%), Positives = 55/108 (50%)
Query: 540 ERLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNI 599
+R ++ I IS ++ +++P I +TIT VK+T D A I+FT D + K+
Sbjct: 3 KRSEKVAEAIHELISGLLVKGLKDPRIGFVTITGVKVTDDLHLATIYFTVIGDDEAKKST 62
Query: 600 LDNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAMMISKLIDGI 647
L+ A+ +IR +L K L + P L F YD S E I L+ I
Sbjct: 63 EAGLNSARGFIRKELGKVLRMRYAPELIFKYDESQEYGNRIDSLLKEI 110
|
Length = 122 |
| >gnl|CDD|206671 cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-binding proteins | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 3e-12
Identities = 51/135 (37%), Positives = 68/135 (50%), Gaps = 27/135 (20%)
Query: 928 IAHVDHGKTTL---IDHLLRQSG--TFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 982
I HVDHGKTTL I +L + G +K I D EK RGITI + +EY
Sbjct: 8 IGHVDHGKTTLTAAITKVLAKKGGAKAKKYDEI-----DKAPEEKARGITINT--AHVEY 60
Query: 983 NGTRINI--IDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPMPQTRFVTRKAL 1034
+ +D PGHAD+ I +M+ D +L++ A +GPMPQTR A
Sbjct: 61 ETANRHYAHVDCPGHADY------IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLAR 114
Query: 1035 KLGFKPIVV-VNKID 1048
++G IVV +NK D
Sbjct: 115 QVGVPYIVVFLNKAD 129
|
EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. Length = 195 |
| >gnl|CDD|206675 cd01888, eIF2_gamma, Gamma subunit of initiation factor 2 (eIF2 gamma) | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 3e-12
Identities = 58/194 (29%), Positives = 84/194 (43%), Gaps = 44/194 (22%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVV-FSEA--GGITQHIGAYN----------------- 110
I TI GHV HGKT+L+ + V E IT +G N
Sbjct: 3 IGTI-GHVAHGKTTLVKALSGVWTVRHKEELKRNITIKLGYANAKIYKCPNCGCPRPYDT 61
Query: 111 ---VVTNHGS-------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTRE 159
G ++F+D PGHE A GA V D +L++AA++ PQT E
Sbjct: 62 PECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSE 121
Query: 160 AIAHAKISGVP-LIVAINKIDKLDI-----NLDRIKQDLISEQVIPEEYGGASPFISISA 213
+A +I G+ +I+ NKID + N ++IK+ + + I E +P I ISA
Sbjct: 122 HLAALEIMGLKHIIILQNKIDLVKEEQALENYEQIKEFV--KGTIAEN----APIIPISA 175
Query: 214 KTGVGINKLLENIS 227
+ I+ L E I
Sbjct: 176 QLKYNIDVLCEYIV 189
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the selenocysteine-specific elongation factor from eubacteria. The translational factor components of the ternary complex, IF2 in eubacteria and eIF2 in eukaryotes are not the same protein (despite their unfortunately similar names). Both factors are GTPases; however, eubacterial IF-2 is a single polypeptide, while eIF2 is heterotrimeric. eIF2-gamma is a member of the same family as eubacterial IF2, but the two proteins are only distantly related. This family includes translation initiation, elongation, and release factors. Length = 197 |
| >gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 5e-12
Identities = 77/266 (28%), Positives = 112/266 (42%), Gaps = 51/266 (19%)
Query: 72 VTIMGHVDHGKTSLLDY------------IRKTNVVFSEAG------------------- 100
V +GHVDHGK++ + + I K E G
Sbjct: 10 VAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERER 69
Query: 101 GITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG---VMPQT 157
G+T + + T+ +T +D PGH F GA D VLVVA DG V PQT
Sbjct: 70 GVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQT 129
Query: 158 REAIAHAKISGV-PLIVAINKIDKLDINLDRIKQ--DLISEQVIPEEYGGAS-PFISISA 213
RE A+ G+ LIVAINK+D ++ + + + +S + Y + PFI ISA
Sbjct: 130 REHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISA 189
Query: 214 KTGVGINKLLENI------SLQAEILELKAP---VTTPAKGVIIESRLDKGKGPVATVLI 264
G + K EN +L + L+ P P + I + G G V +
Sbjct: 190 WNGDNVIKKSENTPWYKGKTLLEALDALEPPEKPTDKPLRIPIQDVYSITGVGTVPVGRV 249
Query: 265 QSGTLRCSDIVV---AGASYGRIRSM 287
++G L+ D VV AG S G ++S+
Sbjct: 250 ETGVLKPGDKVVFEPAGVS-GEVKSI 274
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels [Protein synthesis, Translation factors]. Length = 426 |
| >gnl|CDD|177010 CHL00071, tufA, elongation factor Tu | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 5e-12
Identities = 78/251 (31%), Positives = 108/251 (43%), Gaps = 58/251 (23%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVVFS----------------EAGGI---TQHIGAYNV 111
I TI GHVDHGKT+L I T +A GI T H+ Y
Sbjct: 15 IGTI-GHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHV-EYET 72
Query: 112 VTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP- 170
H + +D PGH + GA D +LVV+A DG MPQT+E I AK GVP
Sbjct: 73 ENRHYA--HVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPN 130
Query: 171 LIVAINKIDKL-DINLDRIKQDLISEQVIPEEYGGAS-PFISISA-----------KTGV 217
++V +NK D++ D L + + + E + ++ G P +S SA K
Sbjct: 131 IVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKR 190
Query: 218 GINKLLENISLQAEILELKAPVTTPAKGVIIESRLDK-------------GKGPVATVLI 264
G NK ++ I + ++ P TP E DK G+G VAT I
Sbjct: 191 GENKWVDKIYNLMDAVDSYIP--TP------ERDTDKPFLMAIEDVFSITGRGTVATGRI 242
Query: 265 QSGTLRCSDIV 275
+ GT++ D V
Sbjct: 243 ERGTVKVGDTV 253
|
Length = 409 |
| >gnl|CDD|184344 PRK13816, PRK13816, ribosome-binding factor A; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 6e-12
Identities = 33/110 (30%), Positives = 65/110 (59%), Gaps = 10/110 (9%)
Query: 540 ERLSRIENQIQRDISEIIAFDIQNP-IINIITITEVKITLDYSYAKIFFTTFNKDI---- 594
+RL R+ + +QR++SE+I ++++P + ++TI+ VK++ D YA ++ T +++
Sbjct: 3 QRLKRMADSVQRELSELIRQELKDPRLGGLVTISSVKVSPDLGYADVYVTVMGRELSDDQ 62
Query: 595 ---SIKNILDNLSKAKNYIRFKLSKKLHIHTLPILNFFYD--NSIENAMM 639
+ + LD L+KA ++R +LS+++ P L F YD N+ N M
Sbjct: 63 NEVAHRETLDVLNKASGFLRTELSRRIKTRITPRLRFHYDKTNAYGNYMF 112
|
Length = 131 |
| >gnl|CDD|234596 PRK00049, PRK00049, elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 8e-12
Identities = 93/316 (29%), Positives = 143/316 (45%), Gaps = 69/316 (21%)
Query: 928 IAHVDHGKTTL---IDHLL--RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCS-IE 981
I HVDHGKTTL I +L + + I D EK RGITI N + +E
Sbjct: 18 IGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQI-----DKAPEEKARGITI---NTAHVE 69
Query: 982 YNGTRINI--IDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPMPQTRFVTRKA 1033
Y + + +D PGHAD+ + +M+ D +L++ A +GPMPQTR A
Sbjct: 70 YETEKRHYAHVDCPGHADY------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLA 123
Query: 1034 LKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATE--EQL--------DFPVIYT 1082
++G IVV +NK D V D +L + L E E L D P+I
Sbjct: 124 RQVGVPYIVVFLNKCDM-------VDDE--ELLE-LVEMEVRELLSKYDFPGDDTPIIRG 173
Query: 1083 SALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQI-----ISLEYSSYLGK 1137
SAL ++ + + ++ L +A+ Y+P + + P + I IS G
Sbjct: 174 SALKALEGDDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGR-----GT 228
Query: 1138 IGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--LIT 1195
+ GR+ G IK ++V I+ D + K + + +F R L++E +GD V L+
Sbjct: 229 VVTGRVERGIIKVGEEVEIVGIRDTQ--KTTVTGVEMF----RKLLDEGQAGDNVGALLR 282
Query: 1196 GI--EEICIGSTICDP 1209
GI E++ G + P
Sbjct: 283 GIKREDVERGQVLAKP 298
|
Length = 396 |
| >gnl|CDD|213679 TIGR02034, CysN, sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 9e-12
Identities = 84/301 (27%), Positives = 136/301 (45%), Gaps = 46/301 (15%)
Query: 931 VDHGKTTLIDHLLRQSGTFRKNQ----------------NIN-ARIMDSNEIEKERGITI 973
VD GK+TLI LL + ++Q I+ A ++D + E+E+GITI
Sbjct: 9 VDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITI 68
Query: 974 FSKNCSIEYNGT--RINII-DTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVT 1030
+ + Y T R I+ DTPGH + + S D +LL+DA +G + QTR +
Sbjct: 69 ---DVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS 125
Query: 1031 RKALKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYA 1089
A LG + +V+ VNK+D + E V + + D I SAL G
Sbjct: 126 YIASLLGIRHVVLAVNKMDLVDYDEE-VFENIKKDYLAFAEQLGFRDVTFIPLSALKG-- 182
Query: 1090 NENSKARQGNMIPLFEA-----ILKYVPVHKDNSNNPLQL--QIISLEYSSYLGKIGIGR 1142
+N +R +M P + IL+ V V +D + PL+ Q ++ + G G
Sbjct: 183 -DNVVSRSESM-PWYSGPTLLEILETVEVERDAQDLPLRFPVQYVNRPNLDFRGYAGT-- 238
Query: 1143 ILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICI 1202
I SG + +VV++ P + +++ +I F G + +A +G V +T +EI I
Sbjct: 239 IASGSVHVGDEVVVL--PSGR--SSRVARIVTFDG----DLEQARAGQAVTLTLDDEIDI 290
Query: 1203 G 1203
Sbjct: 291 S 291
|
Metabolic assimilation of sulfur from inorganic sulfate, requires sulfate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulfates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulfation of sulfate with ATP by sulfate adenylyltransferase (ATP sulfurylase) to produce 5'-phosphosulfate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS). In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase) [Central intermediary metabolism, Sulfur metabolism]. Length = 406 |
| >gnl|CDD|235194 PRK04000, PRK04000, translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 3e-11
Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 48/213 (22%)
Query: 76 GHVDHGKTSLLDYIRKTNV---VFSE--AGGITQHIG----------------AYNV--- 111
GHVDHGKT+L+ + T V SE GIT +G AY
Sbjct: 16 GHVDHGKTTLVQAL--TGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPK 73
Query: 112 VTNHGS-------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAH 163
N GS ++F+D PGHE A GA + D +LV+AA++ PQT+E +
Sbjct: 74 CPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMA 133
Query: 164 AKISGVP-LIVAINKIDKLDI-----NLDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217
I G+ +++ NKID + N ++IK+ + + + E +P I +SA V
Sbjct: 134 LDIIGIKNIVIVQNKIDLVSKERALENYEQIKEFV--KGTVAEN----APIIPVSALHKV 187
Query: 218 GINKLLENISLQAEILELKAPVTTPAKGVIIES 250
I+ L+E +++ EI + + P + + S
Sbjct: 188 NIDALIE--AIEEEIPTPERDLDKPPRMYVARS 218
|
Length = 411 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 5e-11
Identities = 50/144 (34%), Positives = 70/144 (48%), Gaps = 46/144 (31%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKE-RGIT--I--FSKNCSIE 981
I+ HVDHGKT+L+D + RK +N E GIT I + +E
Sbjct: 254 IMGHVDHGKTSLLDAI-------RK----------TNVAAGEAGGITQHIGAY----QVE 292
Query: 982 YNGTRINIIDTPGHADF------GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKAL- 1034
NG +I +DTPGH F G +V I V+L++ A +G MPQ T +A+
Sbjct: 293 TNGGKITFLDTPGHEAFTAMRARGAQVTDI------VVLVVAADDGVMPQ----TIEAIN 342
Query: 1035 --KLGFKPIVV-VNKIDRSNARPE 1055
K PI+V +NKID+ A P+
Sbjct: 343 HAKAAGVPIIVAINKIDKPGANPD 366
|
Length = 746 |
| >gnl|CDD|223606 COG0532, InfB, Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 7e-11
Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 25/136 (18%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
I+ HVDHGKTTL+D +R++ N+ A ++ I + G +
Sbjct: 9 TIMGHVDHGKTTLLDK-IRKT-------NVAAG--EAGGITQHIGAYQVPLD---VIKIP 55
Query: 986 RINIIDTPGHADF------GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
I IDTPGH F G V I +L++ A +G MPQT A G
Sbjct: 56 GITFIDTPGHEAFTAMRARGASVTDI------AILVVAADDGVMPQTIEAINHAKAAGVP 109
Query: 1040 PIVVVNKIDRSNARPE 1055
+V +NKID+ A P+
Sbjct: 110 IVVAINKIDKPEANPD 125
|
Length = 509 |
| >gnl|CDD|215592 PLN03126, PLN03126, Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 7e-11
Identities = 73/250 (29%), Positives = 116/250 (46%), Gaps = 47/250 (18%)
Query: 68 RAPIVTI--MGHVDHGKTSLLDYI------------RKTNVVFS----EAGGITQHIGAY 109
+ P V I +GHVDHGKT+L + +K + + + A GIT +
Sbjct: 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATV 137
Query: 110 NVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGV 169
T + +D PGH + GA D +LVV+ DG MPQT+E I AK GV
Sbjct: 138 EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGV 197
Query: 170 P-LIVAINKIDKLD----INLDRIK-QDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223
P ++V +NK D++D + L ++ ++L+S P G P IS SA + + L+
Sbjct: 198 PNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP---GDDIPIISGSAL--LALEALM 252
Query: 224 ENISLQA-------EILELKAPVTT----PAKG------VIIESRLD-KGKGPVATVLIQ 265
EN +++ +I EL V + P + + +E G+G VAT ++
Sbjct: 253 ENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVE 312
Query: 266 SGTLRCSDIV 275
GT++ + V
Sbjct: 313 RGTVKVGETV 322
|
Length = 478 |
| >gnl|CDD|232995 TIGR00487, IF-2, translation initiation factor IF-2 | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 9e-11
Identities = 44/133 (33%), Positives = 59/133 (44%), Gaps = 19/133 (14%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKER-GITIFSKNCSIEYN-G 984
I+ HVDHGKT+L+D I + + E GIT +E G
Sbjct: 92 IMGHVDHGKTSLLDS-----------------IRKTKVAQGEAGGITQHIGAYHVENEDG 134
Query: 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVV 1044
I +DTPGH F R + D V+L++ A +G MPQT A IV +
Sbjct: 135 KMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAI 194
Query: 1045 NKIDRSNARPEWV 1057
NKID+ A P+ V
Sbjct: 195 NKIDKPEANPDRV 207
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU [Protein synthesis, Translation factors]. Length = 587 |
| >gnl|CDD|104396 PRK10218, PRK10218, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (160), Expect = 1e-10
Identities = 43/125 (34%), Positives = 58/125 (46%), Gaps = 16/125 (12%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFL---------- 121
+ I+ HVDHGKT+L+D + + + F + + N + IT L
Sbjct: 8 IAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWND 67
Query: 122 ------DTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAI 175
DTPGH F R + D V+LVV A DG MPQTR A G+ IV I
Sbjct: 68 YRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVI 127
Query: 176 NKIDK 180
NK+D+
Sbjct: 128 NKVDR 132
|
Length = 607 |
| >gnl|CDD|235462 PRK05433, PRK05433, GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 2e-10
Identities = 73/235 (31%), Positives = 108/235 (45%), Gaps = 63/235 (26%)
Query: 74 IMGHVDHGKTSLLD-YIRKTNVVFSE---------------AGGITQHIGAYNVVTNHGS 117
I+ H+DHGK++L D I T + SE GIT I A V N+ +
Sbjct: 12 IIAHIDHGKSTLADRLIELTGTL-SEREMKAQVLDSMDLERERGIT--IKAQAVRLNYKA 68
Query: 118 -------ITFLDTPGHEAFT-----AMRA-RGAKVTDIVVLVVAADDGVMPQT----REA 160
+ +DTPGH F+ ++ A GA +LVV A GV QT A
Sbjct: 69 KDGETYILNLIDTPGHVDFSYEVSRSLAACEGA------LLVVDASQGVEAQTLANVYLA 122
Query: 161 IAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGG--ASPFISISAKTGVG 218
+ + + +I +NKID + +R+KQ++ E VI G AS + +SAKTG+G
Sbjct: 123 LEN----DLEIIPVLNKIDLPAADPERVKQEI--EDVI-----GIDASDAVLVSAKTGIG 171
Query: 219 INKLLENISLQAEILELKAP---VTTPAKGVIIESRLDKGKGPVATVLIQSGTLR 270
I ++LE I + + P P K +I +S D +G V V + GTL+
Sbjct: 172 IEEVLEAI-----VERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLK 221
|
Length = 600 |
| >gnl|CDD|165621 PLN00043, PLN00043, elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (158), Expect = 2e-10
Identities = 70/259 (27%), Positives = 106/259 (40%), Gaps = 37/259 (14%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKN---------QNINAR------IMDSNEIEK 967
I +I HVD GK+T HL+ + G K +N R ++D + E+
Sbjct: 8 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAER 67
Query: 968 ERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP--- 1024
ERGITI E +ID PGH DF + S D +L+ID+ G
Sbjct: 68 ERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGI 127
Query: 1025 ----QTRFVTRKALKLGFKPIV-VVNKIDR-----SNARPEWVVDATFDLFDKLCATEEQ 1074
QTR A LG K ++ NK+D S AR + +V K+ ++
Sbjct: 128 SKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDK 187
Query: 1075 LDFPVIYTSALHGYANENSKARQGNMI----PLFEAILKYVPVHKDNSNNPLQLQIISLE 1130
+ F I G+ +N R N+ P L + K S+ PL+L + +
Sbjct: 188 IPFVPI-----SGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVY 242
Query: 1131 YSSYLGKIGIGRILSGRIK 1149
+G + +GR+ +G IK
Sbjct: 243 KIGGIGTVPVGRVETGVIK 261
|
Length = 447 |
| >gnl|CDD|235349 PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-10
Identities = 88/348 (25%), Positives = 139/348 (39%), Gaps = 89/348 (25%)
Query: 931 VDHGKTTLIDHLLRQSGTFRKNQ-----NINARI------------MDSNEIEKERGITI 973
VD GK+TLI LL + ++Q N + R +D + E+E+GITI
Sbjct: 36 VDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITI 95
Query: 974 ------FSKNCSIEYNGTRINII-DTPGHADF------GGEVERILSMVDNVLLLIDAVE 1020
FS R II DTPGH + G S D +LLIDA +
Sbjct: 96 DVAYRYFSTE-------KRKFIIADTPGHEQYTRNMATGA------STCDLAILLIDARK 142
Query: 1021 GPMPQTRFVTRKALKLGFKPIVV-VNKID---RSNARPEWVVDATFDLFDKLCATEEQLD 1076
G + QTR + A LG K +VV VNK+D S E + + ++L LD
Sbjct: 143 GVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQL---PGNLD 199
Query: 1077 FPVIYTSALHGYANENSKARQGNM-----IPLFEAILKYVPVHKDNSNNPLQL--QIIS- 1128
+ SAL G +N ++ +M L E +L+ V + + P + Q ++
Sbjct: 200 IRFVPLSALEG---DNVVSQSESMPWYSGPTLLE-VLETVDIQRVVDAQPFRFPVQYVNR 255
Query: 1129 --LEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEA 1186
L++ Y G + SG +K V ++ P K ++ + +I F G D EA
Sbjct: 256 PNLDFRGYAGTLA-----SGVVKVGDRVKVL--PSGK--ESNVARIVTFDG-DL---EEA 302
Query: 1187 LSGDIVLITGIEEICI--GSTICDPSKPNGLPMLNIDEPTLTINFMVN 1232
+G+ + + +EI I G + + + +
Sbjct: 303 FAGEAITLVLEDEIDISRGDLLVAAD----------EALQAVQHASAD 340
|
Length = 474 |
| >gnl|CDD|227582 COG5257, GCD11, Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 5e-10
Identities = 66/233 (28%), Positives = 97/233 (41%), Gaps = 64/233 (27%)
Query: 928 IAHVDHGKTTLIDHL-----LRQSGTFRKNQNI-----NARIMDSNEIEKERGITI--FS 975
+ HVDHGKTTL L R S ++ I +A+I E + T
Sbjct: 16 VGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKC 75
Query: 976 KNCSIEYNGTR-INIIDTPGHADFGGEVERILS---MVDNVLLLIDAVEG-PMPQTR--F 1028
NC E R ++ +D PGH + +LS ++D LL+I A E P PQTR
Sbjct: 76 PNCGAETELVRRVSFVDAPGHETL---MATMLSGAALMDGALLVIAANEPCPQPQTREHL 132
Query: 1029 VTRKALK-LGFKPIVVV-NKID---RSNARPEWVVDATFDLFDKLCATEEQLDF------ 1077
+ AL+ +G K I++V NKID R A + E+ +F
Sbjct: 133 M---ALEIIGIKNIIIVQNKIDLVSRERALENY---------------EQIKEFVKGTVA 174
Query: 1078 ---PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQII 1127
P+I SA H N+ L EAI KY+P + + + P ++ +
Sbjct: 175 ENAPIIPISAQHKA----------NIDALIEAIEKYIPTPERDLDKPPRMYVA 217
|
Length = 415 |
| >gnl|CDD|236047 PRK07560, PRK07560, elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 8e-10
Identities = 50/151 (33%), Positives = 68/151 (45%), Gaps = 36/151 (23%)
Query: 74 IMGHVDHGKTSLLDYIRKTNVVFSE--AG--------------GITQHIGAYNVVTNHGS 117
I+ H+DHGKT+L D + + SE AG GIT I A NV H
Sbjct: 25 IIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGIT--IKAANVSMVHEY 82
Query: 118 ------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPL 171
I +DTPGH F R + D ++VV A +GVMPQT + A V
Sbjct: 83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKP 142
Query: 172 IVAINKIDKLDINLDRIKQDLISE-QVIPEE 201
++ INK+D+ LI E ++ P+E
Sbjct: 143 VLFINKVDR-----------LIKELKLTPQE 162
|
Length = 731 |
| >gnl|CDD|185474 PTZ00141, PTZ00141, elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-09
Identities = 68/256 (26%), Positives = 105/256 (41%), Gaps = 39/256 (15%)
Query: 927 IIAHVDHGKTTLIDHLLRQSG-----TFRKNQNINARI----------MDSNEIEKERGI 971
+I HVD GK+T HL+ + G T K + A + +D + E+ERGI
Sbjct: 12 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGI 71
Query: 972 TIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP------- 1024
TI E IID PGH DF + S D +L++ + G
Sbjct: 72 TIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDG 131
Query: 1025 QTRFVTRKALKLGFKPIVV-VNKIDR-----SNARPEWVVDATFDLFDKLCATEEQLDFP 1078
QTR A LG K ++V +NK+D S R + + K+ E++ F
Sbjct: 132 QTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFI 191
Query: 1079 VIYTSALHGYANENSKARQGNMI-----PLFEAILKYVPVHKDNSNNPLQLQIISLEYSS 1133
I G+ +N + NM L EA+ P K + PL+L + +
Sbjct: 192 PI-----SGWQGDNMIEKSDNMPWYKGPTLLEALDTLEP-PKRPVDKPLRLPLQDVYKIG 245
Query: 1134 YLGKIGIGRILSGRIK 1149
+G + +GR+ +G +K
Sbjct: 246 GIGTVPVGRVETGILK 261
|
Length = 446 |
| >gnl|CDD|129581 TIGR00490, aEF-2, translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-09
Identities = 64/235 (27%), Positives = 96/235 (40%), Gaps = 61/235 (25%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSE--AG--------------GITQHIGAYNVVTNH 115
+ I+ H+DHGKT+L D + + SE AG GIT I A NV H
Sbjct: 22 IGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGIT--INAANVSMVH 79
Query: 116 GS------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGV 169
I +DTPGH F R + D ++VV A +GVMPQT + A V
Sbjct: 80 EYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENV 139
Query: 170 PLIVAINKIDKLDINLDRIKQDLISEQVI--------------PEEYG---------GAS 206
++ INK+D+L IN ++ + E+ I PEE+ G+
Sbjct: 140 KPVLFINKVDRL-INELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVEDGSV 198
Query: 207 PF----------ISISAKTGVGINKLLENIS--LQAEILELKAPVTTPAKGVIIE 249
F + KTG+G + + Q E+ + K+P+ ++I
Sbjct: 199 AFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAK-KSPLHQVVLDMVIR 252
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD [Protein synthesis, Translation factors]. Length = 720 |
| >gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-09
Identities = 41/137 (29%), Positives = 53/137 (38%), Gaps = 18/137 (13%)
Query: 74 IMGHVDHGKTSLLDYIRKTNVVFSEAG------------------GITQHIGAYNVVTNH 115
I H+D GKT+ + I + G GIT A V
Sbjct: 15 ISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG 74
Query: 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAI 175
I +DTPGH FT R +V D V V+ A GV PQ+ A VP I +
Sbjct: 75 HRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFV 134
Query: 176 NKIDKLDINLDRIKQDL 192
NK+DK N R+ +
Sbjct: 135 NKMDKTGANFLRVVNQI 151
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G [Protein synthesis, Translation factors]. Length = 689 |
| >gnl|CDD|225815 COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-09
Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 22/175 (12%)
Query: 929 AHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRIN 988
H+DHGKTTL+ + + + D EK+RGITI + +
Sbjct: 7 GHIDHGKTTLL-------------KALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMG 53
Query: 989 IIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKI 1047
ID PGH DF + L +D LL++ A EG M QT LG K I+V+ K
Sbjct: 54 FIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKA 113
Query: 1048 DRSN-ARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMI 1101
DR + AR E + ++ A + + TSA G E K +++
Sbjct: 114 DRVDEARIEQKI-------KQILADLSLANAKIFKTSAKTGRGIEELKNELIDLL 161
|
Length = 447 |
| >gnl|CDD|206729 cd04166, CysN_ATPS, CysN, together with protein CysD, forms the ATP sulfurylase (ATPS) complex | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 18/105 (17%)
Query: 122 DTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKIS---GVP-LIVAINK 177
DTPGHE +T GA D+ +L+V A GV+ QTR H+ I+ G+ ++VA+NK
Sbjct: 84 DTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRR---HSYIASLLGIRHVVVAVNK 140
Query: 178 IDKLDIN---LDRIKQD---LISEQVIPEEYGGASPFISISAKTG 216
+D +D + + IK D + I + FI ISA G
Sbjct: 141 MDLVDYDEEVFEEIKADYLAFAASLGIEDIT-----FIPISALEG 180
|
CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. Length = 209 |
| >gnl|CDD|238652 cd01342, Translation_Factor_II_like, Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-09
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 1122 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRV 1181
L+ + + G + GR+ SG +K V + P K K+ ++ FKG
Sbjct: 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVG--PGGGGVKGKVKSLKRFKG---- 54
Query: 1182 LVNEALSGDIVLITG--IEEICIGSTICD 1208
V+EA++GDIV I ++I IG T+ D
Sbjct: 55 EVDEAVAGDIVGIVLKDKDDIKIGDTLTD 83
|
Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits. Length = 83 |
| >gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-09
Identities = 72/279 (25%), Positives = 121/279 (43%), Gaps = 66/279 (23%)
Query: 931 VDHGKTTLIDHLL------------------RQSGTFRKNQNIN-ARIMDSNEIEKERGI 971
VD GK+TLI LL ++ GT + I+ A ++D E+E+GI
Sbjct: 33 VDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGT--QGDEIDLALLVDGLAAEREQGI 90
Query: 972 TIFSKNCSIEYNGT--RINII-DTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRF 1028
TI + + Y T R I+ DTPGH + + S D ++L+DA +G + QTR
Sbjct: 91 TI---DVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR 147
Query: 1029 VTRKALKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCAT----EEQLDFPVIYT- 1082
+ A LG + +V+ VNK+D +VD ++FD++ A +L +
Sbjct: 148 HSFIASLLGIRHVVLAVNKMD--------LVDYDQEVFDEIVADYRAFAAKLGLHDVTFI 199
Query: 1083 --SALHGYANENSKARQGNMIPLFE-----AILKYVPVHKDNSNNPLQL--QII---SLE 1130
SAL G +N R M P +E L+ V + D + + Q + +L+
Sbjct: 200 PISALKG---DNVVTRSARM-PWYEGPSLLEHLETVEIASDRNLKDFRFPVQYVNRPNLD 255
Query: 1131 YSSYLGKIGIGRIL---------SGRIKSLQDVVIMNGP 1160
+ + G + G + SG+ ++ +V +G
Sbjct: 256 FRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGD 294
|
Length = 632 |
| >gnl|CDD|227583 COG5258, GTPBP1, GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 3e-09
Identities = 51/190 (26%), Positives = 77/190 (40%), Gaps = 37/190 (19%)
Query: 118 ITFLDTPGHEAF--TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAI 175
++F+DT GHE + T +R + D +LVVAADDGV T+E + A +P+IV +
Sbjct: 203 VSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVV 262
Query: 176 NKIDKLDINLDRIKQ-----------------------DLISEQVIPEEYGGASPFISIS 212
KID + DR + D++ + G P S
Sbjct: 263 TKIDMVPD--DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTS 320
Query: 213 AKTGVGINKLLENISLQAEILELKAPVTTPAKGV----IIESRLDKGKGPVATVLIQSGT 268
+ TG G++ L E L L +G I + G G V + ++SG
Sbjct: 321 SVTGEGLDLLDEFFLL------LPKRRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGI 374
Query: 269 LRCSDIVVAG 278
L D V+ G
Sbjct: 375 LHVGDTVLLG 384
|
Length = 527 |
| >gnl|CDD|139879 PRK13817, PRK13817, ribosome-binding factor A; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (133), Expect = 4e-09
Identities = 32/106 (30%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 540 ERLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNI 599
+R R+ + I + ++E++ ++++ ++ I++T V I+ D AK+F++ ++ + K +
Sbjct: 3 QRQQRVADLIHQQLAELLKKEVRDSRLSKISLTAVSISPDLKQAKVFYSLL-ENQNEKEV 61
Query: 600 LDNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAMMISKLID 645
L+KA Y+R L++ + +P L F YD SIE A IS LI+
Sbjct: 62 QKALNKATGYLRHLLAQATVLRYVPKLEFVYDESIERAHRISLLIE 107
|
Length = 119 |
| >gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 5e-09
Identities = 45/134 (33%), Positives = 58/134 (43%), Gaps = 20/134 (14%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGIT--IFSKNCSIEYN 983
I+ HVDHGKTTL+D + RK Q GIT I + EY
Sbjct: 248 TILGHVDHGKTTLLDKI-------RKTQIAQKEA---------GGITQKIGAYEVEFEYK 291
Query: 984 GTRINII--DTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
I+ DTPGH F R ++ D +L+I A +G PQT I
Sbjct: 292 DENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPII 351
Query: 1042 VVVNKIDRSNARPE 1055
V +NKID++NA E
Sbjct: 352 VAINKIDKANANTE 365
|
Length = 742 |
| >gnl|CDD|211860 TIGR03680, eif2g_arch, translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 5e-09
Identities = 63/228 (27%), Positives = 92/228 (40%), Gaps = 52/228 (22%)
Query: 927 IIAHVDHGKTTLIDHL-----LRQSGTFRKNQNI-----NARIMDSNEIEKERGITIFSK 976
++ HVDHGKTTL L S ++ +I +A I E + T
Sbjct: 9 MVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPV 68
Query: 977 --NCSIEYNGTR-INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTRFVTRK 1032
NC E R ++ +D PGH + +++D LL+I A E P PQTR
Sbjct: 69 CPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMA 128
Query: 1033 ALKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATE--EQL----------DFPV 1079
+G K IV+V NKID L K A E E++ + P+
Sbjct: 129 LEIIGIKNIVIVQNKID---------------LVSKEKALENYEEIKEFVKGTIAENAPI 173
Query: 1080 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQII 1127
I SALH N+ L EAI K++P + + + P + +
Sbjct: 174 IPVSALHN----------ANIDALLEAIEKFIPTPERDLDKPPLMYVA 211
|
This model represents the archaeal translation initiation factor 2 subunit gamma and is found in all known archaea. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Length = 406 |
| >gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 6e-09
Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 39/168 (23%)
Query: 72 VTIMGHVDHGKTSLLDYI--------RKTNVVFSEAG-------------GITQHIGAYN 110
+ ++GH GKT+L + + R V E G ++
Sbjct: 2 IALVGHSGSGKTTLAEALLYATGAIDRLGRV---EDGNTVSDYDPEEKKRKMSIETSVAP 58
Query: 111 VVTNHGSITFLDTPG-----HEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAK 165
+ N I +DTPG E +A+R D ++VV A GV T +
Sbjct: 59 LEWNGHKINLIDTPGYADFVGETLSALR-----AVDAALIVVEAQSGVEVGTEKVWEFLD 113
Query: 166 ISGVPLIVAINKIDKLDINLDRIKQDL---ISEQVIPEEY--GGASPF 208
+ +P I+ INK+D+ + D+ L V+P + G F
Sbjct: 114 DAKLPRIIFINKMDRARADFDKTLAALREAFGRPVVPIQLPIGEGDEF 161
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains only bacterial members. Length = 268 |
| >gnl|CDD|235349 PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 8e-09
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 10/77 (12%)
Query: 122 DTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKIS---GVP-LIVAINK 177
DTPGHE +T A GA D+ +L++ A GV+ QTR H+ I+ G+ L+VA+NK
Sbjct: 113 DTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRR---HSFIATLLGIKHLVVAVNK 169
Query: 178 IDKLDIN---LDRIKQD 191
+D +D + +RI++D
Sbjct: 170 MDLVDYSEEVFERIRED 186
|
Length = 474 |
| >gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 1e-08
Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRK-----NQNINARIMDSNEIEKERGITIFSKNCSI 980
+++ HVDHGKTTL+D + R S ++ Q+I A + + IE G K I
Sbjct: 8 SVLGHVDHGKTTLLDKI-RGSAVAKREAGGITQHIGATEIPMDVIEGICGD--LLKKFKI 64
Query: 981 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTR--KALKLGF 1038
+ IDTPGH F +R ++ D +L++D EG PQT+ + K F
Sbjct: 65 RLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPF 124
Query: 1039 KPIVVVNKIDRSN 1051
+V NKIDR
Sbjct: 125 --VVAANKIDRIP 135
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; the alignment generated by This model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region [Protein synthesis, Translation factors]. Length = 590 |
| >gnl|CDD|225448 COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-08
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 29/122 (23%)
Query: 122 DTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKIS---GVP-LIVAINK 177
DTPGHE +T A GA D+ +L+V A GV+ QTR H+ I+ G+ ++VA+NK
Sbjct: 92 DTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRR---HSFIASLLGIRHVVVAVNK 148
Query: 178 IDKLDINLDRIKQDLISEQVIPEEYGGASP--------FISISAKTGVGINKLLENISLQ 229
+D +D + + + I +Y + FI ISA G +N+ +
Sbjct: 149 MDLVDYSEEVFEA-------IVADYLAFAAQLGLKDVRFIPISALLG-------DNVVSK 194
Query: 230 AE 231
+E
Sbjct: 195 SE 196
|
Length = 431 |
| >gnl|CDD|239671 cd03700, eEF2_snRNP_like_II, EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-08
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 1136 GKIGIGRILSGRIKSLQDVVIMN-----GPDDKPNKAKINQIRVFKGLDRVLVNEALSGD 1190
G I GR+ SG I+ Q V ++ ++ +K I ++ + G R V+E +G+
Sbjct: 16 GFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGN 75
Query: 1191 IVLITGIEEICIGSTICD 1208
IVLI G++++ G+T
Sbjct: 76 IVLIVGLDQLKSGTTATI 93
|
During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. Length = 93 |
| >gnl|CDD|235195 PRK04004, PRK04004, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 3e-08
Identities = 47/150 (31%), Positives = 68/150 (45%), Gaps = 41/150 (27%)
Query: 923 IKSAIIA---HVDHGKTTLIDHLLRQSGTFRK-----NQNINARIMDSNEIEKERGITIF 974
++ I+ HVDHGKTTL+D +R + K Q+I A + + IEK G
Sbjct: 4 LRQPIVVVLGHVDHGKTTLLDK-IRGTAVAAKEAGGITQHIGATEVPIDVIEKIAG---- 58
Query: 975 SKNCSIEYNGTRINI-----IDTPGHADF------GGEVERILSMVDNVLLLIDAVEGPM 1023
+ ++ I IDTPGH F GG ++ D +L++D EG
Sbjct: 59 ---PLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGG------ALADIAILVVDINEGFQ 109
Query: 1024 PQTRFVTRKALKL--GFK-P-IVVVNKIDR 1049
PQ T +A+ + K P +V NKIDR
Sbjct: 110 PQ----TIEAINILKRRKTPFVVAANKIDR 135
|
Length = 586 |
| >gnl|CDD|206676 cd01889, SelB_euk, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 29/139 (20%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITI---FS-------- 975
++ HVD GKT+L L + T D N +ERGIT+ FS
Sbjct: 5 LLGHVDSGKTSLAKALSEIAST---------AAFDKNPQSQERGITLDLGFSSFEVDKPK 55
Query: 976 ---KNCSIEYNGTRINIIDTPGHADFGGEVERILS---MVDNVLLLIDAVEGPMPQTRFV 1029
N + + +I ++D PGHA + I+ ++D +LL++DA +G QT
Sbjct: 56 HLEDNENPQIENYQITLVDCPGHASL---IRTIIGGAQIIDLMLLVVDAKKGIQTQTAEC 112
Query: 1030 TRKALKLGFKPIVVVNKID 1048
L IVV+NKID
Sbjct: 113 LVIGELLCKPLIVVLNKID 131
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains eukaryotic SelBs and some from archaea. Length = 192 |
| >gnl|CDD|213679 TIGR02034, CysN, sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-08
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 10/77 (12%)
Query: 122 DTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKIS---GVP-LIVAINK 177
DTPGHE +T A GA D+ VL+V A GV+ QTR H+ I+ G+ +++A+NK
Sbjct: 86 DTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR---HSYIASLLGIRHVVLAVNK 142
Query: 178 IDKLDIN---LDRIKQD 191
+D +D + + IK+D
Sbjct: 143 MDLVDYDEEVFENIKKD 159
|
Metabolic assimilation of sulfur from inorganic sulfate, requires sulfate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulfates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulfation of sulfate with ATP by sulfate adenylyltransferase (ATP sulfurylase) to produce 5'-phosphosulfate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS). In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase) [Central intermediary metabolism, Sulfur metabolism]. Length = 406 |
| >gnl|CDD|238652 cd01342, Translation_Factor_II_like, Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-08
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 474 GLAEIRQVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEV 533
A + +V +A + G +++ K+R+ + G++ SLKRFK V E
Sbjct: 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGV-KGKVKSLKRFKGEVDEA 59
Query: 534 KAGFEC 539
AG
Sbjct: 60 VAGDIV 65
|
Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits. Length = 83 |
| >gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 3e-08
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
Query: 118 ITFLDTPG-HEAFTA-----MRA--RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGV 169
I F+DTPG H+ A +A K D+V+ VV AD+ + P + K
Sbjct: 55 IIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKT 114
Query: 170 PLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
P+I+ +NKID + D+ + + E++ E + + ISA G +++LL+ I
Sbjct: 115 PVILVLNKIDLVK---DKEELLPLLEEL--SELMDFAEIVPISALKGDNVDELLDVI 166
|
Length = 292 |
| >gnl|CDD|206675 cd01888, eIF2_gamma, Gamma subunit of initiation factor 2 (eIF2 gamma) | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 55/238 (23%), Positives = 80/238 (33%), Gaps = 101/238 (42%)
Query: 928 IAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITI--------FSK--- 976
I HV HGKTTL+ + ++ ++ E +R ITI K
Sbjct: 6 IGHVAHGKTTLV-------------KALSGVWTVRHKEELKRNITIKLGYANAKIYKCPN 52
Query: 977 ----NCSIEYNGTR------------INIIDTPGHADFGGEVERIL--------SMVDNV 1012
++ +D PGH IL +++D
Sbjct: 53 CGCPRPYDTPECECPGCGGETKLVRHVSFVDCPGH--------EILMATMLSGAAVMDGA 104
Query: 1013 LLLIDAVEG-PMPQTR--FVTRKALK-LGFKPIVVV-NKID---RSNARPEWVVDATFDL 1064
LLLI A E P PQT AL+ +G K I+++ NKID A +
Sbjct: 105 LLLIAANEPCPQPQTSEHLA---ALEIMGLKHIIILQNKIDLVKEEQALENY-------- 153
Query: 1065 FDKLCATEEQLDF---------PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113
E+ +F P+I SA Y N+ L E I+K +P
Sbjct: 154 -------EQIKEFVKGTIAENAPIIPISAQLKY----------NIDVLCEYIVKKIPT 194
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the selenocysteine-specific elongation factor from eubacteria. The translational factor components of the ternary complex, IF2 in eubacteria and eIF2 in eukaryotes are not the same protein (despite their unfortunately similar names). Both factors are GTPases; however, eubacterial IF-2 is a single polypeptide, while eIF2 is heterotrimeric. eIF2-gamma is a member of the same family as eubacterial IF2, but the two proteins are only distantly related. This family includes translation initiation, elongation, and release factors. Length = 197 |
| >gnl|CDD|217388 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2 | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 5e-08
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 1136 GKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT 1195
G + GR+ SG +K VVI P+ K ++ + +F G R V A +G I+
Sbjct: 1 GTVATGRVESGTLKKGDKVVIG--PNGTGKKGRVTSLEMFHGDLREAVAGANAGIILAGI 58
Query: 1196 GIEEICIGSTIC 1207
G+++I G T+
Sbjct: 59 GLKDIKRGDTLT 70
|
Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to pfam03143, and in fact has weak sequence matches to this domain. Length = 70 |
| >gnl|CDD|239755 cd04088, EFG_mtEFG_II, EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 6e-08
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 1134 YLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL 1193
++GK+ R+ SG +K+ + N K K ++ ++ G + V EA +GDI
Sbjct: 13 FVGKLSFVRVYSGTLKA--GSTLYNSTKGK--KERVGRLLRMHGKKQEEVEEAGAGDIGA 68
Query: 1194 ITGIEEICIGSTICD 1208
+ G+++ G T+CD
Sbjct: 69 VAGLKDTATGDTLCD 83
|
During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. mtEFG1 and mtEFG2 show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. Length = 83 |
| >gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 7e-08
Identities = 54/264 (20%), Positives = 107/264 (40%), Gaps = 66/264 (25%)
Query: 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD---------NSNNPLQLQI- 1126
FPV+ SA + N+ + L +A++ Y+P D ++ ++ +
Sbjct: 254 FPVLCGSA---FKNKGVQL-------LLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKAS 303
Query: 1127 ---------ISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKG 1177
+ ++G++ R+ SG +KS V N +K K ++ ++
Sbjct: 304 DDEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYV--KNSRKNK--KERVGRLVKMHA 359
Query: 1178 LDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLA 1237
+R + E +GDI G+++ G T+CDP L + EP +++
Sbjct: 360 NNREEIKEVRAGDICAAIGLKDTTTGDTLCDPKIDVILERMEFPEPVISLAV-------- 411
Query: 1238 GREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEV-----------SGRGELHLT 1286
+ K + D E +G+ + + +D + +G GELHL
Sbjct: 412 ----------EPKTKADQE---KMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLD 458
Query: 1287 ILIENMRRE-GYELSVSRPRVIFK 1309
I+++ M+RE E +V P+V ++
Sbjct: 459 IIVDRMKREFKVEANVGAPQVAYR 482
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G [Protein synthesis, Translation factors]. Length = 689 |
| >gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 7e-08
Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
Query: 116 GSITFLDTPGHE---AFTAMR-ARGAKV---TDIVVLVVAADDGVMPQTREAIAHAKISG 168
G + +DT G + +R + +V TD+ +LVV A G E I K
Sbjct: 55 GPVVLIDTAGLDDEGELGELRVEKTREVLDKTDLALLVVDAGVGPGEYELELIEELKERK 114
Query: 169 VPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISL 228
+P IV INKID + + + K + P I +SA TG GI++L E I
Sbjct: 115 IPYIVVINKIDLGEESAELEKLEKKFGL----------PPIFVSALTGEGIDELKEAI-- 162
Query: 229 QAEILELKAPVTTPAKGVI 247
E+L T ++
Sbjct: 163 -IELLPEDFEEPTIVGDLV 180
|
This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391 |
| >gnl|CDD|211345 cd02868, PseudoU_synth_hTruB2_like, Pseudouridine synthase, humanTRUB2_like | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 54/229 (23%), Positives = 85/229 (37%), Gaps = 24/229 (10%)
Query: 664 GVLLLDKPYGLSSNNALKKI-----KYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSN 718
G+ + KP G+ + I KY K + LD F++G+L L K +
Sbjct: 1 GLFAVYKPPGVHWKHVRDTIESNLLKYFPEDKVLVGVHRLDAFSSGVLVLGVNHGNKLLS 60
Query: 719 YLSEAD--KYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPP 776
+L + Y LG TE G++I+ + E IE++L Q
Sbjct: 61 HLYSNHPTRVYTIRGLLGKATENFFHTGRVIEKTTYDHITREKIERLLAVIQSGHQQ--- 117
Query: 777 MYSALKYKGIPL-----YKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGT- 830
A + + + A G+ IY I ++++ P TL + C T
Sbjct: 118 --KAFELCSVDDQSQQAAELAARGLIRPADKSPPIIYGIRLLEFRPPEFTLEVQCINETQ 175
Query: 831 -YIRVLSEDIGKMLGCGAHLKYLRRI-----GIDKLTLDKCLNIDTIIK 873
Y+R L +IG L A +RR +D L K N+ II
Sbjct: 176 EYLRKLIHEIGLELRSSAVCTQVRRTRDGPFTVDDALLRKQWNLQNIIS 224
|
This group consists of eukaryotic pseudouridine synthases similar to human TruB pseudouridine synthase homolog 2 (TRUB2). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Length = 226 |
| >gnl|CDD|206726 cd04163, Era, E | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 1e-07
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 13/117 (11%)
Query: 118 ITFLDTPG-HEAFTAMR------ARGA-KVTDIVVLVVAADDGVMPQTREAIAHAKISGV 169
I F+DTPG H+ + A A K D+V+ VV A + + + K S
Sbjct: 53 IIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEWIGEGDEFILELLKKSKT 112
Query: 170 PLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
P+I+ +NKID + D+ + E++ +E + ISA G +++LLE I
Sbjct: 113 PVILVLNKIDLVK---DKEDLLPLLEKL--KELHPFAEIFPISALKGENVDELLEYI 164
|
coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168 |
| >gnl|CDD|182508 PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-07
Identities = 41/118 (34%), Positives = 54/118 (45%), Gaps = 43/118 (36%)
Query: 927 IIA---HVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY- 982
IIA HVDHGKTTL+ Q+ T +NA D EK+RG+TI + Y
Sbjct: 2 IIATAGHVDHGKTTLL-----QAIT-----GVNA---DRLPEEKKRGMTI-----DLGYA 43
Query: 983 -----NGTRINIIDTPGHADF--------GGEVERILSMVDNVLLLIDAVEGPMPQTR 1027
+G + ID PGH F GG +D+ LL++ +G M QTR
Sbjct: 44 YWPQPDGRVLGFIDVPGHEKFLSNMLAGVGG--------IDHALLVVACDDGVMAQTR 93
|
Length = 614 |
| >gnl|CDD|235194 PRK04000, PRK04000, translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-07
Identities = 64/229 (27%), Positives = 92/229 (40%), Gaps = 90/229 (39%)
Query: 930 HVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITI--------FSK--NC- 978
HVDHGKTTL+ L +G + D + E +RGITI K +C
Sbjct: 17 HVDHGKTTLVQAL---TGVW----------TDRHSEELKRGITIRLGYADATIRKCPDCE 63
Query: 979 ---------SIEYNGT------RINIIDTPGHADFGGEV--ERILS---MVDNVLLLIDA 1018
G+ R++ +D PGH E +LS ++D +L+I A
Sbjct: 64 EPEAYTTEPKCPNCGSETELLRRVSFVDAPGH-----ETLMATMLSGAALMDGAILVIAA 118
Query: 1019 VEG-PMPQTR--FVTRKALK-LGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEE 1073
E P PQT+ + AL +G K IV+V NKID +V ++ E
Sbjct: 119 NEPCPQPQTKEHLM---ALDIIGIKNIVIVQNKID--------LVSK-----ERALENYE 162
Query: 1074 QL----------DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112
Q+ + P+I SALH N+ L EAI + +P
Sbjct: 163 QIKEFVKGTVAENAPIIPVSALHKV----------NIDALIEAIEEEIP 201
|
Length = 411 |
| >gnl|CDD|218250 pfam04760, IF2_N, Translation initiation factor IF-2, N-terminal region | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 3e-07
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 1 MSVKSSVVIKNLMKLGQMVTINQVLDQETAMILVEEMGH 39
+ V S +IK L KLG M T N LD+ETA +L EE G
Sbjct: 13 LGVSSKELIKKLFKLGIMKTHNSTLDEETAELLAEEFGV 51
|
This conserved feature at the N-terminus of bacterial translation initiation factor IF2 has recently had its structure solved. It shows structural similarity to the tRNA anticodon Stem Contact Fold domains of the methionyl-tRNA and glutaminyl-tRNA synthetases, and a similar fold is also found in the B5 domain of the phenylalanine-tRNA synthetase. Length = 52 |
| >gnl|CDD|238652 cd01342, Translation_Factor_II_like, Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 4e-07
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 243 AKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSI 302
+ ++ + DKG+G VAT ++SGTL+ D V G G ++ + K++
Sbjct: 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKV----KSLKRFK--- 53
Query: 303 PVEIQGLTKVPFSGEELFVILNEKKAREIG 332
G +G+ + ++L +K +IG
Sbjct: 54 -----GEVDEAVAGDIVGIVLKDKDDIKIG 78
|
Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits. Length = 83 |
| >gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 4e-07
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 21/171 (12%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTN--VVFSEAGGITQHIGAYNVVTNHG-SITFLDTPG--- 125
+ I+G + GK+SLL+ + +V AG T G T +DT G
Sbjct: 5 IAIIGRPNVGKSSLLNALLGEERVIVSDIAG--TTRDSIDVPFEYDGQKYTLIDTAGIRK 62
Query: 126 -------HEAFTAMRARGA-KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINK 177
E ++ +R A + D+V+LV+ A +G+ Q G LI+ +NK
Sbjct: 63 KGKVTEGIEKYSVLRTLKAIERADVVLLVLDASEGITEQDLRIAGLILEEGKALIIVVNK 122
Query: 178 IDKLDINLDRIKQ--DLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
D ++ + +K+ + ++ +Y +P + ISA TG G++KL + I
Sbjct: 123 WDLVEKDEKTMKEFEKELRRKLPFLDY---APIVFISALTGQGVDKLFDAI 170
|
This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174 |
| >gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 9e-07
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 122 DTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKIS---GVPLIV-AINK 177
DTPGHE +T GA D+ +++V A GV+ QTR H+ I+ G+ +V A+NK
Sbjct: 110 DTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR---HSFIASLLGIRHVVLAVNK 166
Query: 178 IDKLDIN---LDRIKQD 191
+D +D + D I D
Sbjct: 167 MDLVDYDQEVFDEIVAD 183
|
Length = 632 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-06
Identities = 41/191 (21%), Positives = 81/191 (42%), Gaps = 29/191 (15%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTN--VVFSEAG----GITQHIGAYNVVTNHGSITFLDTPG 125
+ I+G + GK+SL++ I +V AG I + +DT G
Sbjct: 181 IAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEF-----ERDGRKYVLIDTAG 235
Query: 126 ----------HEAFTAMRARGA-KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVA 174
E ++ R A + D+V+LV+ A +G+ Q + +G +++
Sbjct: 236 IRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIV 295
Query: 175 INKIDKLDINLDRIKQDLISEQVIPEEYG--GASPFISISAKTGVGINKLLENISLQAEI 232
+NK D ++ + +++ ++ + + +P + ISA TG G++KL E I E
Sbjct: 296 VNKWDLVEEDEATMEE---FKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYEC 352
Query: 233 LELKAPVTTPA 243
+ ++T
Sbjct: 353 ATRR--ISTSL 361
|
Length = 444 |
| >gnl|CDD|206673 cd01886, EF-G, Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 2e-06
Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 18/139 (12%)
Query: 74 IMGHVDHGKTSL----LDYIRKTNVV-----------FSEAG---GITQHIGAYNVVTNH 115
I+ H+D GKT+ L Y + + + + E GIT A
Sbjct: 4 IIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDWMEQERERGITIQSAATTCFWKD 63
Query: 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAI 175
I +DTPGH FT R +V D V V A GV PQT A GVP I +
Sbjct: 64 HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVQPQTETVWRQADRYGVPRIAFV 123
Query: 176 NKIDKLDINLDRIKQDLIS 194
NK+D+ + R+ + +
Sbjct: 124 NKMDRTGADFYRVVEQIRE 142
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains both eukaryotic and bacterial members. Length = 270 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 2e-06
Identities = 39/160 (24%), Positives = 62/160 (38%), Gaps = 35/160 (21%)
Query: 980 IEYNGTRINIIDTPGHADFGGE--------VERILSMVDNVLLLIDAVEGPMPQTRFVTR 1031
E+ G +IDT G + E + D +L ++D EG P+ + +
Sbjct: 42 AEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAK 101
Query: 1032 KALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP-VIYTSALHGYAN 1090
K G I+V NKID + + V A F L F I SA HG
Sbjct: 102 WLRKSGKPVILVANKID--GKKED-AVAAEF----------YSLGFGEPIPISAEHGR-- 146
Query: 1091 ENSKARQGNMIPLFEAILKYVP---VHKDNSNNPLQLQII 1127
+ L +AIL+ +P ++ + P+++ II
Sbjct: 147 --------GIGDLLDAILELLPEEEEEEEEEDGPIKIAII 178
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|185474 PTZ00141, PTZ00141, elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-06
Identities = 43/133 (32%), Positives = 56/133 (42%), Gaps = 21/133 (15%)
Query: 101 GITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMP----- 155
GIT I + T T +D PGH F G D+ +LVVA+ G
Sbjct: 70 GITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISK 129
Query: 156 --QTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVI---------PEEYG 203
QTRE A GV +IV INK+D +N + + D I ++V PE+
Sbjct: 130 DGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKV- 188
Query: 204 GASPFISISAKTG 216
PFI IS G
Sbjct: 189 ---PFIPISGWQG 198
|
Length = 446 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 3e-06
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 21/119 (17%)
Query: 118 ITFLDTPGHEAF------TAMRA---RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISG 168
+DT G + +R + D+++ VV +G+ P E + S
Sbjct: 53 FILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSK 112
Query: 169 VPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYG-GASPFISISAKTGVGINKLLENI 226
P+I+ +NKID L +E++ E Y G + ISA+ G GI LL+ +
Sbjct: 113 KPVILVVNKIDNLK-----------AEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAV 160
|
Length = 444 |
| >gnl|CDD|240362 PTZ00327, PTZ00327, eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-06
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 41/182 (22%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHAKISGVP-LIVAI 175
++F+D PGH+ A GA V D +L++AA++ PQT E +A +I + +I+
Sbjct: 119 VSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQ 178
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEY-----------GGASPFISISAKTGVGINKLLE 224
NKI DL+ E ++Y +P I ISA+ I+ +LE
Sbjct: 179 NKI------------DLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLE 226
Query: 225 NISLQAEILELKAPV---TTPAKGVIIES--------RLDKGKGPVATVLIQSGTLRCSD 273
I Q I P T+P + ++I S ++ KG VA I G L+ D
Sbjct: 227 YICTQIPI-----PKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGD 281
Query: 274 IV 275
+
Sbjct: 282 EI 283
|
Length = 460 |
| >gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 5e-06
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 19/107 (17%)
Query: 1009 VDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 1068
VD VL ++DA E P F+ K K+ I+V+NKID + E L L
Sbjct: 85 VDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEE--------LLPLL 136
Query: 1069 CATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114
E +DF ++ SAL G N+ L + I KY+P
Sbjct: 137 EELSELMDFAEIVPISALKGD----------NVDELLDVIAKYLPEG 173
|
Length = 292 |
| >gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 5e-06
Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 37/181 (20%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 982
IK AII + GK++L++ LL + R++ S+ G T S + EY
Sbjct: 3 IKIAIIGRPNVGKSSLLNALLGEE-----------RVIVSDI----AGTTRDSIDVPFEY 47
Query: 983 NGTRINIIDTPG-----HADFGGE------VERILSMVDNVLLLIDAVEGPMPQTRFVTR 1031
+G + +IDT G G E + + D VLL++DA EG Q +
Sbjct: 48 DGQKYTLIDTAGIRKKGKVTEGIEKYSVLRTLKAIERADVVLLVLDASEGITEQDLRIAG 107
Query: 1032 KALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF----PVIYTSALHG 1087
L+ G I+VVNK D + T F+K +L F P+++ SAL G
Sbjct: 108 LILEEGKALIIVVNKWDLVEKDEK-----TMKEFEKE--LRRKLPFLDYAPIVFISALTG 160
Query: 1088 Y 1088
Sbjct: 161 Q 161
|
This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174 |
| >gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 5e-06
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPE 200
D+++ VV +G+ P E + + S P+I+ +NKID + E+ E
Sbjct: 78 DVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKIDNIK-----------EEEEAAE 126
Query: 201 EYG-GASPFISISAKTGVGINKLLENI 226
Y G I ISA+ G GI LL+ I
Sbjct: 127 FYSLGFGEPIPISAEHGRGIGDLLDAI 153
|
This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 8e-06
Identities = 61/231 (26%), Positives = 92/231 (39%), Gaps = 49/231 (21%)
Query: 894 GIIYLSDLLSKRFLHGQNLFLSDENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQ 953
GI L D + + L +E IK AII + GK++LI+ +L +
Sbjct: 152 GIGDLLDAVLE-LLPPDEEE-EEEEETDPIKIAIIGRPNVGKSSLINAILGEE------- 202
Query: 954 NINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPG---HADFGGEVE------- 1003
R++ S+ G T S + E +G + +IDT G VE
Sbjct: 203 ----RVIVSDI----AGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVART 254
Query: 1004 -RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATF 1062
+ + D VLL+IDA EG Q + + G ++VVNK D +AT
Sbjct: 255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEED-----EATM 309
Query: 1063 DLFDKLCATEEQLDF----PVIYTSALHGYANENSKARQGNMIPLFEAILK 1109
+ F K +L F P+++ SAL G + LFEAI +
Sbjct: 310 EEFKKK--LRRKLPFLDFAPIVFISALTGQ----------GLDKLFEAIKE 348
|
Length = 444 |
| >gnl|CDD|206732 cd04169, RF3, Release Factor 3 (RF3) protein involved in the terminal step of translocation in bacteria | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINK 177
I LDTPGHE F+ R D V+V+ A GV PQTR+ ++ G+P+I INK
Sbjct: 73 INLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINK 132
Query: 178 IDK-----LDINLDRIKQDL 192
+D+ L++ LD I+ +L
Sbjct: 133 LDREGRDPLEL-LDEIENEL 151
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. Length = 268 |
| >gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 2e-05
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 118 ITFLDTPG-HEAFTAM------RARGA-KVTDIVVLVVAADDGVMPQTREAIAHAKISGV 169
I F+DTPG H+ A+ AR A K D+++ VV AD+G P + K +
Sbjct: 56 IIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKT 115
Query: 170 PLIVAINKIDKL--DINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
P+I+ +NKIDK+ L ++ L ++ + ISA G ++ LLE I
Sbjct: 116 PVILVVNKIDKVKPKTVLLKLIAFL-------KKLLPFKEIVPISALKGDNVDTLLEII 167
|
Length = 298 |
| >gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 20/109 (18%)
Query: 1002 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDAT 1061
V RI+ D VL ++DA + + ++R + R AL+LG K I+V+NK D P V++
Sbjct: 5 VRRIIKEADVVLEVVDARDPELTRSRKLERMALELGKKLIIVLNKADLV---PREVLEKW 61
Query: 1062 FDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110
++F E PV+Y SA + R G I L I +
Sbjct: 62 KEVF-------ESEGLPVVYVSA---------RERLGTRI-LRRTIKEL 93
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157 |
| >gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-05
Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 69 APIVTIMGHVDHGKTSLLDYI-RKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG-- 125
V ++G + GK+SLL+ + + V ++ G T+ V + F+DT G
Sbjct: 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIK 509
Query: 126 --------HEAFTAMRARGA-KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAIN 176
E ++++R + A + +++ + + A + Q + ++ A +G L++ N
Sbjct: 510 RRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFN 569
Query: 177 KIDKLDINLDRIKQDLISEQVIPEEYGGA--SPFISISAKTGVGINKL 222
K D +D R Q L E++ E+ + +++SAKTG N+L
Sbjct: 570 KWDLMD-EFRR--QRL--ERLWKTEFDRVTWARRVNLSAKTGWHTNRL 612
|
Length = 712 |
| >gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 3e-05
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 19/121 (15%)
Query: 989 IIDTPGHADFG--GE--VER---ILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
+IDT G D G GE VE+ +L D LL++DA GP + + + I
Sbjct: 59 LIDTAGLDDEGELGELRVEKTREVLDKTDLALLVVDAGVGPGEYELELIEELKERKIPYI 118
Query: 1042 VVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMI 1101
VV+NKID E E++ P I+ SAL G + K ++
Sbjct: 119 VVINKIDLGEESAELEKL------------EKKFGLPPIFVSALTGEGIDELKEAIIELL 166
Query: 1102 P 1102
P
Sbjct: 167 P 167
|
This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 3e-05
Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 22/162 (13%)
Query: 81 GKTSLLDYIRKTN--VVFSEAGGITQHIGAYNVVTNHG-SITFLDTPG----------HE 127
GK++L++ + +V AG T +G T +DT G E
Sbjct: 184 GKSTLVNALLGEERVIVSDIAG--TTRDSIDIPFERNGKKYTLIDTAGIRRKGKVTEGVE 241
Query: 128 AFTAMRARGA-KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN-- 184
++ +R A + D+V+LV+ A +G+ Q A +G L++ +NK D +
Sbjct: 242 KYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLALEAGKALVIVVNKWDLVKDEKT 301
Query: 185 LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ K++ + ++ ++ +P + ISA TG G++KLL+ I
Sbjct: 302 REEFKKE-LRRKLPFLDF---APIVFISALTGQGVDKLLDAI 339
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 3e-05
Identities = 30/117 (25%), Positives = 42/117 (35%), Gaps = 22/117 (18%)
Query: 980 IEYNGTRINIIDTPGHADFGGE--------VERILSMVDNVLLLIDAVEGPMPQTRFVTR 1031
E+ G +IDT G E + D +L ++D EG P + +
Sbjct: 40 AEWGGREFILIDTGGIEPDDEGISKEIREQAEIAIEEADVILFVVDGREGLTPADEEIAK 99
Query: 1032 KALKLGFKPIVVVNKIDRSNARPEWVVDATFDL-FDKLCATEEQLDFPVIYTSALHG 1087
K I+VVNKID N + E + L F + I SA HG
Sbjct: 100 YLRKSKKPVILVVNKID--NIKEEEEAAEFYSLGFGE-----------PIPISAEHG 143
|
This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157 |
| >gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 38/197 (19%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
A++ GK+TL++ LL + E+ + + Y G
Sbjct: 4 AVVGEFSAGKSTLLNALLGE------------------EVLPTGVTPTTAVITVLRY-GL 44
Query: 986 R--INIIDTPG-------HADFGGEVERILSMVDNVLLLIDAVEGPMPQT--RFVTRKAL 1034
+ ++DTPG H + E L D V+ ++ A + P+ ++ F+
Sbjct: 45 LKGVVLVDTPGLNSTIEHHTE---ITESFLPRADAVIFVLSA-DQPLTESEREFLKEILK 100
Query: 1035 KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTS---ALHGYANE 1091
G K V+NKID + E + + + + S AL
Sbjct: 101 WSGKKIFFVLNKIDLL-SEEELEEVLEYSREELGVLELGGGEPRIFPVSAKEALEARLQG 159
Query: 1092 NSKARQGNMIPLFEAIL 1108
+ + + + E L
Sbjct: 160 DEELLEQSGFEELEEHL 176
|
The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180 |
| >gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 3e-05
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 16/86 (18%)
Query: 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPE 200
D+V+LV+ A + + + E + ++ P+IV +NK D L E + E
Sbjct: 296 DLVLLVLDASEPLTEEDDEILE--ELKDKPVIVVLNKAD------------LTGEIDLEE 341
Query: 201 EYGGASPFISISAKTGVGINKLLENI 226
E G P I ISAKTG GI++L E I
Sbjct: 342 ENG--KPVIRISAKTGEGIDELREAI 365
|
Length = 449 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 3e-05
Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 18/174 (10%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF--LDTPGHEAFTAMRARGAK 138
GKT+LL+ + I A + +I DT G E + ++R +
Sbjct: 17 GKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYR 76
Query: 139 VTDIVVLVVAAD-----DGVMPQTREAIAHAKISGVPLIVAINKID---------KLDIN 184
+ +++V + D + + E + VP+++ NKID ++
Sbjct: 77 GANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQ 136
Query: 185 LDRIKQDLISEQVIPEEYGGASPFISISAK--TGVGINKLLENISLQAEILELK 236
L+R L+ + SAK TG +N+L + + + K
Sbjct: 137 LNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEIEK 190
|
Length = 219 |
| >gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-05
Identities = 45/195 (23%), Positives = 86/195 (44%), Gaps = 36/195 (18%)
Query: 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-----VFSEAGGITQHIGAYNVVTNHGSITFL 121
P+V ++G+ + GK++L + + +V +F+ T+ I + + +
Sbjct: 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRI----ELGDGRKVLLT 245
Query: 122 DTPG------HEAFTAMRARGAKVT--DIVVLVV-AADDGV---MPQTREAIAHAKISGV 169
DT G H A ++ +V D+++ VV A+D + + + +A +
Sbjct: 246 DTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEI 305
Query: 170 PLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229
P+I+ +NKID L+ E+++ E G+ + ISAKTG G++ L E I
Sbjct: 306 PIILVLNKIDLLE-----------DEEILAELERGSPNPVFISAKTGEGLDLLRERIIEL 354
Query: 230 A----EILELKAPVT 240
+ L+ P T
Sbjct: 355 LSGLRTEVTLELPYT 369
|
Length = 411 |
| >gnl|CDD|206666 cd01878, HflX, HflX GTPase family | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 3e-05
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 141 DIVVLVV-AADDGV---MPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQ 196
D+++ VV A+D + E + +P+I+ +NKID LD E+
Sbjct: 122 DLLLHVVDASDPDREEQIETVEEVLKELGADDIPIILVLNKIDLLD-----------DEE 170
Query: 197 VIPEEYGGASPFISISAKTGVGINKLLENI 226
+ G + ISAKTG G++ L E I
Sbjct: 171 LEERLRAGRPDAVFISAKTGEGLDLLKEAI 200
|
HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. Length = 204 |
| >gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 47.7 bits (115), Expect = 4e-05
Identities = 58/205 (28%), Positives = 85/205 (41%), Gaps = 55/205 (26%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 982
IK AII + GK++LI+ LL + R++ S+ G T S + E
Sbjct: 174 IKIAIIGRPNVGKSSLINALLGEE-----------RVIVSDI----AGTTRDSIDTPFER 218
Query: 983 NGTRINIIDTPG-------HADFGGEVE--------RILSMVDNVLLLIDAVEGPMPQTR 1027
+G + +IDT G VE + + D VLL+IDA EG Q
Sbjct: 219 DGQKYTLIDTAGIRRKGKVTEG----VEKYSVIRTLKAIERADVVLLVIDATEGITEQDL 274
Query: 1028 FVTRKALKLGFKPIV-VVNKIDRSNARPEWVVDATFDLFDKLCATE-EQLDF-PVIYTSA 1084
+ AL+ G + +V VVNK D V + T + F K LD+ P+++ SA
Sbjct: 275 RIAGLALEAG-RALVIVVNKWDL-------VDEKTMEEFKKELRRRLPFLDYAPIVFISA 326
Query: 1085 LHGYANENSKARQGNMIPLFEAILK 1109
L G + L EAI +
Sbjct: 327 LTGQ----------GVDKLLEAIDE 341
|
Length = 435 |
| >gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 4e-05
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 15/87 (17%)
Query: 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPE 200
D+V+LVV D + + P+IV +NK D L+S+
Sbjct: 84 DLVLLVV--DASEGLDEEDLEILELPAKKPVIVVLNKSD------------LLSDAEGIS 129
Query: 201 EYGGASPFISISAKTGVGINKLLENIS 227
E G P I+ISAKTG GI++L E +
Sbjct: 130 ELNG-KPIIAISAKTGEGIDELKEALL 155
|
TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159 |
| >gnl|CDD|206726 cd04163, Era, E | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 5e-05
Identities = 45/165 (27%), Positives = 61/165 (36%), Gaps = 36/165 (21%)
Query: 934 GKTTLIDHLLRQ--SGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIID 991
GK+TL++ L+ Q S K Q RI RGI +I +D
Sbjct: 15 GKSTLLNALVGQKISIVSPKPQTTRNRI---------RGIYTDDD--------AQIIFVD 57
Query: 992 TPG-HADFGG-------EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
TPG H L VD VL ++DA E F+ K I+V
Sbjct: 58 TPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEWIGEGDEFILELLKKSKTPVILV 117
Query: 1044 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-PVIYTSALHG 1087
+NKID + + L +KL +E F + SAL G
Sbjct: 118 LNKIDLVKDKEDL-----LPLLEKL---KELHPFAEIFPISALKG 154
|
coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 5e-05
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPE 200
D+++ VV +G+ P+ E + SG P+I+ NKID + V E
Sbjct: 80 DVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK-----------EDAVAAE 128
Query: 201 EYG-GASPFISISAKTGVGINKLLENI 226
Y G I ISA+ G GI LL+ I
Sbjct: 129 FYSLGFGEPIPISAEHGRGIGDLLDAI 155
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 5e-05
Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 51/204 (25%)
Query: 53 LLNEYNKNITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTN--VVFSEAGGITQHIGAYN 110
+L E + + + I+G + GK+SL++ + +V AG T + +
Sbjct: 157 ILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAG-TT--RDSID 213
Query: 111 VVTNHG--SITFLDTPGHEAFTAMRARGAKVT------------------DIVVLVVAAD 150
T +DT G +R +G KVT D+V+LV+ A
Sbjct: 214 TPFERDGQKYTLIDTAG------IRRKG-KVTEGVEKYSVIRTLKAIERADVVLLVIDAT 266
Query: 151 DGVMPQTREAIAHAKI------SGVPLIVAINKIDKLDIN-LDRIKQDLISE-QVIPEEY 202
+G+ Q +I +G L++ +NK D +D ++ K++L +
Sbjct: 267 EGITEQ------DLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDY-- 318
Query: 203 GGASPFISISAKTGVGINKLLENI 226
+P + ISA TG G++KLLE I
Sbjct: 319 ---APIVFISALTGQGVDKLLEAI 339
|
Length = 435 |
| >gnl|CDD|237185 PRK12739, PRK12739, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 6e-05
Identities = 44/132 (33%), Positives = 55/132 (41%), Gaps = 18/132 (13%)
Query: 74 IMGHVDHGKTS----LLDY---IRKTNVVFSEAG-----------GITQHIGAYNVVTNH 115
IM H+D GKT+ +L Y K V A GIT A
Sbjct: 13 IMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG 72
Query: 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAI 175
I +DTPGH FT R +V D V V A GV PQ+ A GVP IV +
Sbjct: 73 HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFV 132
Query: 176 NKIDKLDINLDR 187
NK+D++ + R
Sbjct: 133 NKMDRIGADFFR 144
|
Length = 691 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 6e-05
Identities = 55/187 (29%), Positives = 77/187 (41%), Gaps = 52/187 (27%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQ--------SGTFRKNQNINARIMDSNEIEKERGITIF 974
IK AII + GK+TL++ LL + +GT R DS +I
Sbjct: 173 IKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTR----------DSIDIP-------- 214
Query: 975 SKNCSIEYNGTRINIIDTPG-----HADFGGE------VERILSMVDNVLLLIDAVEGPM 1023
E NG + +IDT G G E + + D VLL++DA EG
Sbjct: 215 -----FERNGKKYTLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGIT 269
Query: 1024 PQTRFVTRKALKLGFKPIVVVNKID--RSNARPEWVVDATFDLFDKLCATEEQLDF-PVI 1080
Q + AL+ G ++VVNK D + E +L KL LDF P++
Sbjct: 270 EQDLRIAGLALEAGKALVIVVNKWDLVKDEKTREEFKK---ELRRKL----PFLDFAPIV 322
Query: 1081 YTSALHG 1087
+ SAL G
Sbjct: 323 FISALTG 329
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|226593 COG4108, PrfC, Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 8e-05
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINK 177
+ LDTPGHE F+ R D V+V+ A G+ PQT + ++ +P+ INK
Sbjct: 83 VNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINK 142
Query: 178 IDK-----LDINLDRIKQDL 192
+D+ L++ LD I+++L
Sbjct: 143 LDREGRDPLEL-LDEIEEEL 161
|
Length = 528 |
| >gnl|CDD|239682 cd03711, Tet_C, Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O) | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 9e-05
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 1317 EPYENLFVDIE-EINQ---GIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQN 1372
EPY E E+ Q G M L G ++ +I + V LE IP +Q+
Sbjct: 1 EPYL----RFELEVPQDALGRAMSDLAKMGATFEDPQIKG-DEVTLEGTIPVATSQDYQS 55
Query: 1373 EFITLTRGTGLISHVFEEYAP 1393
E + T G G++ F+ Y P
Sbjct: 56 ELPSYTHGEGVLETEFKGYRP 76
|
This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA. Length = 78 |
| >gnl|CDD|240409 PTZ00416, PTZ00416, elongation factor 2; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-04
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 34/139 (24%)
Query: 73 TIMGHVDHGKTSLLD-YIRKTNVVFSEAGG---------------IT----------QHI 106
+++ HVDHGK++L D + K ++ S+ G IT +H
Sbjct: 23 SVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHD 82
Query: 107 GAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQT----REAIA 162
I +D+PGH F++ +VTD ++VV +GV QT R+A+
Sbjct: 83 LEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQ 142
Query: 163 HAKISGVPLIVAINKIDKL 181
+I V + INK+D+
Sbjct: 143 E-RIRPV---LFINKVDRA 157
|
Length = 836 |
| >gnl|CDD|129594 TIGR00503, prfC, peptide chain release factor 3 | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-04
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINK 177
+ LDTPGHE F+ R D ++V+ A GV +TR+ + ++ P+ +NK
Sbjct: 82 VNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNK 141
Query: 178 IDKLDIN-----LDRIKQDL 192
+D+ DI LD ++ +L
Sbjct: 142 LDR-DIRDPLELLDEVENEL 160
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus [Protein synthesis, Translation factors]. Length = 527 |
| >gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-04
Identities = 66/258 (25%), Positives = 109/258 (42%), Gaps = 49/258 (18%)
Query: 20 TINQVLDQETAMI-LVEEMGHVAHASK-LNDPESFLLNEYNKNITAESLVRAP------- 70
++ LD +I LVE+ + + E + L+E ++++ S A
Sbjct: 217 DFDETLD---LLIGLVEDAIEEQEYDQYAANLEGYELDEGDEDLLEGSGFVAGDEKAGPK 273
Query: 71 ---IVTIMGHVDHGKTSLLDYI--RKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG 125
+V I+G + GK++L++ I R+ VV + G+T+ +Y+ +DT G
Sbjct: 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVV-EDTPGVTRDRVSYDAEWAGTDFKLVDTGG 332
Query: 126 HE-------AFTAMRARGA-KVTDIVVLVVAADDGVMPQTREAIAHA-KISGVPLIVAIN 176
E + A +A+ A + D VV VV G + T E I + +G P+++A+N
Sbjct: 333 WEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVG-LTSTDERIVRMLRRAGKPVVLAVN 391
Query: 177 KIDKLDINLDRIKQDLISEQVIPE--EYGGASPFISISAKTGVGINKLLENISLQAEILE 234
KID D SE E + G P+ ISA G G+ LL+ E L+
Sbjct: 392 KID-----------DQASEYDAAEFWKLGLGEPY-PISAMHGRGVGDLLD------EALD 433
Query: 235 LKAPVTTPAKGVIIESRL 252
V G + S L
Sbjct: 434 -SLKVAEKTSGFLTPSGL 450
|
Length = 712 |
| >gnl|CDD|206728 cd04165, GTPBP1_like, GTP binding protein 1 (GTPBP1)-like family includes GTPBP2 | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 40/159 (25%), Positives = 60/159 (37%), Gaps = 52/159 (32%)
Query: 72 VTIMGHVDHGKTSL--------LDYIR-----------------KTNVV------FSEAG 100
V ++G+VD GK++L LD R +T+ V F G
Sbjct: 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNDILGFDSDG 61
Query: 101 GITQHIGAYNVVTNHGS-------------ITFLDTPGHEAF--TAMRARGAKVTDIVVL 145
+ N NH +TF+D GHE + T + D +L
Sbjct: 62 EVV------NYPDNHLGELDVEICEKSSKVVTFIDLAGHERYLKTTVFGMTGYAPDYAML 115
Query: 146 VVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN 184
VV A+ G++ T+E + A VP+ V + KID N
Sbjct: 116 VVGANAGIIGMTKEHLGLALALKVPVFVVVTKIDMTPAN 154
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and survival. This fusion product may contribute to the onset of GBM. Length = 224 |
| >gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-04
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 132 MRARGA-KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQ 190
RA+ A + D+V+ V+ A + + I P+IV +NK D
Sbjct: 288 ERAKKAIEEADLVLFVLDASQPLDKEDLALIELLP-KKKPIIVVLNKAD----------- 335
Query: 191 DLISEQVIPE-EYGGASPFISISAKTGVGINKLLENI 226
L+S+ + + ISISAKTG G++ L E I
Sbjct: 336 -LVSKIELESEKLANGDAIISISAKTGEGLDALREAI 371
|
Length = 454 |
| >gnl|CDD|237185 PRK12739, PRK12739, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 3e-04
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 33/139 (23%)
Query: 1183 VNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGK 1242
+ E +GDI G+++ G T+CD P L + EP I+ V P
Sbjct: 364 IKEVYAGDIAAAVGLKDTTTGDTLCDEKAPIILESMEFPEPV--ISLAV--EP------- 412
Query: 1243 FITTRQIKNRLDHEIKNNIGL----------RVTQNKHD-DSIYEVSGRGELHLTILIEN 1291
K + D + K + L RV ++ +I +SG GELHL I+++
Sbjct: 413 -------KTKADQD-KMGLALQKLAEEDPTFRVETDEETGQTI--ISGMGELHLDIIVDR 462
Query: 1292 MRRE-GYELSVSRPRVIFK 1309
M+RE E +V P+V ++
Sbjct: 463 MKREFKVEANVGAPQVAYR 481
|
Length = 691 |
| >gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 3e-04
Identities = 49/173 (28%), Positives = 67/173 (38%), Gaps = 36/173 (20%)
Query: 926 AIIAHVDHGKTTLIDHLLRQ--SGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 983
AII + GK+TL++ L+ Q S K Q RI RGI I
Sbjct: 10 AIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRI---------RGIVTTDNAQII--- 57
Query: 984 GTRINIIDTPG----HADFG----GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK 1035
+DTPG G L VD +L ++DA EG P F+ + K
Sbjct: 58 -----FVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKK 112
Query: 1036 LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-PVIYTSALHG 1087
I+VVNKID+ V L + ++ L F ++ SAL G
Sbjct: 113 TKTPVILVVNKIDK--------VKPKTVLLKLIAFLKKLLPFKEIVPISALKG 157
|
Length = 298 |
| >gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 81 GKTSLLDYI--RKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG---HEAFTAMRAR 135
GK+SL++ + RK S+ G TQ I +NV +D PG + +R +
Sbjct: 11 GKSSLINALTNRKKLARTSKTPGRTQLINFFNVG---DKFRLVDLPGYGYAKVSKEVREK 67
Query: 136 GAKVTD----------IVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL 185
K+ + VVL++ A G P E + + G+P ++ + K DKL +
Sbjct: 68 WGKLIEEYLENRENLKGVVLLIDARHGPTPIDLEMLEFLEELGIPFLIVLTKADKLKKS- 126
Query: 186 DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
+ K ++ + + P I S+K G GI++L I+
Sbjct: 127 ELAKVLKKIKEEL-NLFNILPPVILFSSKKGTGIDELRALIA 167
|
The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170 |
| >gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADD----GVMPQTREAIAHAKIS-GVPLI 172
+ LDT G E + A+R + + +LV + D + + RE I K VPL+
Sbjct: 50 LNILDTAGQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLL 109
Query: 173 VAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221
+ NK D L+ D+ + + + E++G ++ SAKT ++K
Sbjct: 110 LVGNKCD-LE---DKRQVSVEEAANLAEQWG--VNYVETSAKTRANVDK 152
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|239661 cd03690, Tet_II, Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O) | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 4e-04
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 1142 RILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC 1201
R+ SG ++ L+D V +N + K KI ++RVF + V + +GDI ++TG++ +
Sbjct: 24 RLYSGTLR-LRDSVRVNREE----KIKITELRVFNNGEVVTADTVTAGDIAILTGLKGLR 78
Query: 1202 IGSTI 1206
+G +
Sbjct: 79 VGDVL 83
|
This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA. Length = 85 |
| >gnl|CDD|234569 PRK00007, PRK00007, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 5e-04
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQT----REAIAHAKISGVPLIV 173
I +DTPGH FT R +V D V V A GV PQ+ R+A + VP I
Sbjct: 77 INIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY----KVPRIA 132
Query: 174 AINKIDKLDINLDRIKQDLI 193
+NK+D+ + R+ + +
Sbjct: 133 FVNKMDRTGADFYRVVEQIK 152
|
Length = 693 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 7e-04
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 979 SIEYNGTRINIIDTPGHADFGGE---------VERILSMVDNVLLLIDAVEGPMPQTRFV 1029
E+ G +IDT G D + + D +L ++D EG P +
Sbjct: 45 DAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEI 104
Query: 1030 TRKALKLGFKPIVVVNKID 1048
+ + I+VVNKID
Sbjct: 105 AKILRRSKKPVILVVNKID 123
|
Length = 444 |
| >gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 7e-04
Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 34/159 (21%)
Query: 980 IEYNGTRINIIDTPG----HADFGGEV----ERILSMVDNVLLLIDAVEGPMPQTRFVTR 1031
E+ G +IDT G F ++ E + D +L ++D G P + +
Sbjct: 44 AEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAK 103
Query: 1032 KALKLGFKP-IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYAN 1090
K KP I+VVNK+D + ++ F L E SA HG
Sbjct: 104 ILRKSN-KPVILVVNKVDGPDEE-----ADAYE-FYSLGLGE------PYPISAEHGR-- 148
Query: 1091 ENSKARQGNMIPLFEAILKYVPVHK--DNSNNPLQLQII 1127
+ L +AIL+ +P + D + P+++ II
Sbjct: 149 --------GIGDLLDAILEELPEEEEEDEEDEPIKIAII 179
|
Length = 435 |
| >gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 36/169 (21%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF----LDTPGHE 127
+ ++G GK++L IR + F E T +Y T+ LDT G E
Sbjct: 2 LVVLGAGGVGKSALT--IRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQE 58
Query: 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIA--HAKISG------VPLIVAINKID 179
F+AMR + + D +LV + ++ E I +I VP+++ NK
Sbjct: 59 EFSAMRDQYIRNGDGFILVYSITS---RESFEEIKNIREQILRVKDKEDVPIVLVGNKC- 114
Query: 180 KLDINLDRIKQDLISEQVIPEEYGGA------SPFISISAKTGVGINKL 222
DL +E+ + E G A PF+ SAKT + I++L
Sbjct: 115 -----------DLENERQVSTEEGEALAEEWGCPFLETSAKTNINIDEL 152
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160 |
| >gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 0.001
Identities = 49/198 (24%), Positives = 73/198 (36%), Gaps = 52/198 (26%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT----------NHGSITFLDTPGHEAFT 130
GKT+L F+ G Q +G + VT I +D PG + T
Sbjct: 15 GKTTL----------FNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLT 64
Query: 131 AMRARGAKVT---------DIVVLVVAAD--DGVMP---QTREAIAHAKISGVPLIVAIN 176
A + KV D++V VV A + + Q E G+P+I+A+N
Sbjct: 65 A-YSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLEL-------GIPMILALN 116
Query: 177 KIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELK 236
ID+ RI + +S+ G P + AK G G+ +L I AE K
Sbjct: 117 MIDEAKKRGIRIDIEKLSK-----LLG--VPVVPTVAKRGEGLEELKRAIIELAES---K 166
Query: 237 APVTTPAKGVIIESRLDK 254
G IE + +
Sbjct: 167 TTPREVDYGEEIEEEIKE 184
|
Length = 653 |
| >gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 27/165 (16%)
Query: 81 GKTSLLDYI--RKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGH----------EA 128
GK+SL++ + +K S+ G TQ I + V + +D PG+ E
Sbjct: 36 GKSSLINALTNQKNLARTSKTPGRTQLINFFEVD---DELRLVDLPGYGYAKVPKEVKEK 92
Query: 129 FTAM-------RARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL 181
+ + RA VVL++ A RE I G+P+IV + K DKL
Sbjct: 93 WKKLIEEYLEKRAN----LKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKL 148
Query: 182 DINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ +R KQ + + + + S+ GI++L I
Sbjct: 149 KKS-ERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKI 192
|
Length = 200 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 45/194 (23%), Positives = 70/194 (36%), Gaps = 57/194 (29%)
Query: 934 GKTTLIDHLLRQ--------SGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
GK++L++ LL Q GT R + + E+ +
Sbjct: 9 GKSSLLNALLGQNVGIVSPIPGTTR---DPVRKEW---ELLPLGPVV------------- 49
Query: 986 RINIIDTPGHADFGGE----VERILSM---VDNVLLLIDAVEGPMPQTRFVTRKALKLGF 1038
+IDTPG + GG VE + D VLL++D+ P+ + + +
Sbjct: 50 ---LIDTPGLDEEGGLGRERVEEARQVADRADLVLLVVDSDLTPVEEEAKLGLLRERG-- 104
Query: 1039 KPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQ 1097
KP+++V NKID E KL D PVI SAL G
Sbjct: 105 KPVLLVLNKIDLVPESEE----EELLRERKLELL---PDLPVIAVSALPG---------- 147
Query: 1098 GNMIPLFEAILKYV 1111
+ L + I + +
Sbjct: 148 EGIDELRKKIAELL 161
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 0.002
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPE 200
D+++ VV G+ P E + S P+I+ +NK+D D E E
Sbjct: 82 DVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDE-----------EADAYE 130
Query: 201 EYG-GASPFISISAKTGVGINKLLE 224
Y G ISA+ G GI LL+
Sbjct: 131 FYSLGLGEPYPISAEHGRGIGDLLD 155
|
Length = 435 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.002
Identities = 40/170 (23%), Positives = 64/170 (37%), Gaps = 46/170 (27%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGITQHIGA----YNVVTNHGSITFL--DTPGHEAFTAMRA 134
GKTSLL +R + FSE T IG + + + DT G E F ++ +
Sbjct: 12 GKTSLL--LRFVDNKFSENYKST--IGVDFKSKTIEVDGKKVKLQIWDTAGQERFRSITS 67
Query: 135 ---RGAKVTDIVVLVVAADDGVMPQT--------REAIAHAKISGVPLIVAINKIDKLDI 183
RGA +LV + ++ E +A +P+I+ NK D
Sbjct: 68 SYYRGA---HGAILVYDVTN---RESFENLDKWLNELKEYAP-PNIPIILVGNKSD---- 116
Query: 184 NLDRIKQDLISEQVIPEEYG------GASPFISISAKTGVGINKLLENIS 227
L E+ + E F SAKTG +++ E+++
Sbjct: 117 --------LEDERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLA 158
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 17/69 (24%)
Query: 168 GVPLIVAINKID-----KLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222
G+P++VA+N ID + I+LD++ + L P + SA+ G GI++L
Sbjct: 102 GLPVVVALNMIDEAEKRGIKIDLDKLSELL------------GVPVVPTSARKGEGIDEL 149
Query: 223 LENISLQAE 231
L+ I+ AE
Sbjct: 150 LDAIAKLAE 158
|
Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159 |
| >gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 39/121 (32%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGIT---QHIGAYNVVTNHGSITFLDTPGHEA 128
+ MG GKT+L+ R F T H Y V +I LDT G +
Sbjct: 2 LVFMGAAGVGKTALIQ--RFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYS 59
Query: 129 FTAMRARGAKVTDIVVLVVAADDGVMPQT-------REAIAHAK-ISGVPLIVAINKIDK 180
F AMR + D LV + DD P++ RE I K VP++V NKID
Sbjct: 60 FPAMRKLSIQNGDAFALVYSVDD---PESFEEVKRLREEILEVKEDKFVPIVVVGNKIDS 116
Query: 181 L 181
L
Sbjct: 117 L 117
|
Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197 |
| >gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 29/170 (17%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTN-VVFSEAGGITQHIGAYNVVTNHGSIT--FLDTPG--- 125
V ++G + GK+SLL+ + V + G T + + + G T F+DT G
Sbjct: 214 VALVGKPNVGKSSLLNKLAGEERSVVDDVAGTT--VDPVDSLIELGGKTWRFVDTAGLRR 271
Query: 126 -------HEAFTAMRARGA-KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINK 177
HE + ++R A + ++ V+++ A + + Q + ++ +G L++A NK
Sbjct: 272 RVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNK 331
Query: 178 IDKLD----INLDR-IKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222
D +D L+R I ++L P ++ISAKTG ++KL
Sbjct: 332 WDLVDEDRRYYLEREIDRELAQVPWAPR--------VNISAKTGRAVDKL 373
|
Length = 472 |
| >gnl|CDD|234569 PRK00007, PRK00007, elongation factor G; Reviewed | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 0.003
Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 47/190 (24%)
Query: 1134 YLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL 1193
++GK+ R+ SG ++S V +N K K +I +I R + E +GDI
Sbjct: 322 FVGKLTFFRVYSGVLESGSYV--LNSTKGK--KERIGRILQMHANKREEIKEVRAGDIAA 377
Query: 1194 ITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRL 1253
G+++ G T+CD P L + EP I+ V P K +
Sbjct: 378 AVGLKDTTTGDTLCDEKNPIILESMEFPEP--VISVAV--EP--------------KTKA 419
Query: 1254 DHEIKNNIGL----------RVTQNKHDDSIYEVSGR------GELHLTILIENMRRE-G 1296
D E K I L RV+ + E +G+ GELHL I+++ M+RE
Sbjct: 420 DQE-KMGIALQKLAEEDPSFRVSTD-------EETGQTIIAGMGELHLDIIVDRMKREFK 471
Query: 1297 YELSVSRPRV 1306
E +V +P+V
Sbjct: 472 VEANVGKPQV 481
|
Length = 693 |
| >gnl|CDD|217388 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2 | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.003
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 257 GPVATVLIQSGTLRCSDIVVAGASY----GRIRSMLNENGKN---ILEAGPSIPVEIQGL 309
G VAT ++SGTL+ D VV G + GR+ S+ +G + A I + GL
Sbjct: 1 GTVATGRVESGTLKKGDKVVIGPNGTGKKGRVTSLEMFHGDLREAVAGANAGIILAGIGL 60
Query: 310 TKV 312
+
Sbjct: 61 KDI 63
|
Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to pfam03143, and in fact has weak sequence matches to this domain. Length = 70 |
| >gnl|CDD|239757 cd04090, eEF2_II_snRNP, Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.003
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 1141 GRILSGRIKSLQDVVIMN---GPDDKPN--KAKINQIRVFKGLDRVLVNEALSGDIVLIT 1195
GRI SG IK Q V ++ DD+ + I ++ + G ++ VNEA +G+ VLI
Sbjct: 21 GRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80
Query: 1196 GIEEICI-GSTICD 1208
GI+ + +TI
Sbjct: 81 GIDSSIVKTATITS 94
|
This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome. Length = 94 |
| >gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 13/128 (10%)
Query: 63 AESLVRAPIVTIMGHVDHGKTSLLDYI--RKTNVVFSEAGGITQHIGAYNVVTNHGSITF 120
A P+V ++G + GK++L++ I R+ VV + G+T+ +Y+ N T
Sbjct: 32 AAEGGPLPVVAVVGRPNVGKSTLVNRILGRREAVV-EDVPGVTRDRVSYDAEWNGRRFTV 90
Query: 121 LDTPGHE-------AFTAMRARGAKVT-DIVVLVVAADDGVMPQTREAIAHA-KISGVPL 171
+DT G E A A +A A T D V+ VV A G T EA+A + SG P+
Sbjct: 91 VDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGAT-ATDEAVARVLRRSGKPV 149
Query: 172 IVAINKID 179
I+A NK+D
Sbjct: 150 ILAANKVD 157
|
Length = 472 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.004
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 18/93 (19%)
Query: 141 DIVVLVVAADDGVMPQTREA-----IAHAKISGVPLIVAINKIDKLDINLDRIKQDLISE 195
D V++V + + P + A+ SG+ ++ +NK D +D D ++L+
Sbjct: 4 DQVLIVFSLKE---PFFNLRLLDRYLVAAEASGIEPVIVLNKADLVD---DEELEELL-- 55
Query: 196 QVIPEEYGGAS-PFISISAKTGVGINKLLENIS 227
E Y P +++SAKTG G+++L E +
Sbjct: 56 ----EIYEKLGYPVLAVSAKTGEGLDELRELLK 84
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1527 | |||
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 100.0 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 100.0 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 100.0 | |
| KOG0462|consensus | 650 | 100.0 | ||
| KOG1145|consensus | 683 | 100.0 | ||
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 100.0 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 100.0 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 100.0 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 100.0 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 100.0 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 100.0 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 100.0 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 100.0 | |
| KOG0465|consensus | 721 | 100.0 | ||
| PRK00007 | 693 | elongation factor G; Reviewed | 100.0 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 100.0 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 100.0 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 100.0 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 100.0 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 100.0 | |
| PRK04642 | 300 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 100.0 | |
| PRK01851 | 303 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK05033 | 312 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK00130 | 290 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK02755 | 295 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK02484 | 294 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK01550 | 304 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK05389 | 305 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK01528 | 292 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK14123 | 305 | tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK14124 | 308 | tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK14846 | 345 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK03287 | 298 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| cd02573 | 277 | PseudoU_synth_EcTruB PseudoU_synth_EcTruB: Pseudou | 100.0 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 100.0 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 100.0 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 100.0 | |
| PRK00020 | 244 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 100.0 | |
| PRK14122 | 312 | tRNA pseudouridine synthase B; Provisional | 100.0 | |
| TIGR00431 | 209 | TruB tRNA pseudouridine 55 synthase. TruB, the tRN | 100.0 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 100.0 | |
| PRK00989 | 230 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| PRK04099 | 273 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| cd00506 | 210 | PseudoU_synth_TruB_like PseudoU_synth_TruB: Pseudo | 100.0 | |
| PRK02193 | 279 | truB tRNA pseudouridine synthase B; Provisional | 100.0 | |
| KOG0464|consensus | 753 | 100.0 | ||
| cd02867 | 312 | PseudoU_synth_TruB_4 PseudoU_synth_TruB_4: Pseudou | 100.0 | |
| COG0130 | 271 | TruB Pseudouridine synthase [Translation, ribosoma | 100.0 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 100.0 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 100.0 | |
| cd02868 | 226 | PseudoU_synth_hTruB2_like PseudoU_synth_ hTRUB2_Li | 100.0 | |
| KOG0469|consensus | 842 | 100.0 | ||
| KOG1144|consensus | 1064 | 100.0 | ||
| PRK04270 | 300 | H/ACA RNA-protein complex component Cbf5p; Reviewe | 100.0 | |
| TIGR00425 | 322 | CBF5 rRNA pseudouridine synthase, putative. This f | 100.0 | |
| cd02572 | 182 | PseudoU_synth_hDyskerin PseudoU_synth_hDyskerin_Li | 100.0 | |
| PF01509 | 149 | TruB_N: TruB family pseudouridylate synthase (N te | 100.0 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 100.0 | |
| KOG0468|consensus | 971 | 100.0 | ||
| KOG0467|consensus | 887 | 100.0 | ||
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 100.0 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 100.0 | |
| CHL00071 | 409 | tufA elongation factor Tu | 100.0 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 100.0 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 100.0 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 100.0 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 100.0 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 100.0 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 100.0 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 100.0 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 100.0 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 100.0 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 100.0 | |
| KOG0460|consensus | 449 | 100.0 | ||
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 100.0 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 100.0 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 100.0 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 100.0 | |
| KOG2559|consensus | 318 | 100.0 | ||
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 100.0 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.98 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.97 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.97 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.97 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.97 | |
| KOG0458|consensus | 603 | 99.97 | ||
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.97 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.97 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.97 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.96 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.96 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.96 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.96 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.95 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.95 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.95 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.95 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.95 | |
| KOG1145|consensus | 683 | 99.95 | ||
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.95 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.95 | |
| KOG0462|consensus | 650 | 99.94 | ||
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.94 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.94 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.94 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.94 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.94 | |
| TIGR00082 | 114 | rbfA ribosome-binding factor A. Associates with fr | 99.94 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.94 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.94 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.94 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.94 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.94 | |
| PRK13818 | 121 | ribosome-binding factor A; Provisional | 99.94 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.94 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.94 | |
| KOG0459|consensus | 501 | 99.94 | ||
| PRK13815 | 122 | ribosome-binding factor A; Provisional | 99.94 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.94 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.93 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.93 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.93 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.93 | |
| COG0858 | 118 | RbfA Ribosome-binding factor A [Translation, ribos | 99.93 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.93 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.93 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.93 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.93 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.93 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.93 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.93 | |
| PRK13817 | 119 | ribosome-binding factor A; Provisional | 99.93 | |
| PRK13816 | 131 | ribosome-binding factor A; Provisional | 99.92 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.92 | |
| KOG0461|consensus | 522 | 99.92 | ||
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.92 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.92 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.91 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.91 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.91 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.91 | |
| PRK00521 | 120 | rbfA ribosome-binding factor A; Validated | 99.91 | |
| PF11987 | 108 | IF-2: Translation-initiation factor 2; InterPro: I | 99.91 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.91 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.91 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.91 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.91 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.91 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.9 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.9 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.9 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.9 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.9 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.9 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.9 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.89 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.89 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.88 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.87 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.87 | |
| KOG0460|consensus | 449 | 99.87 | ||
| PF02033 | 104 | RBFA: Ribosome-binding factor A; InterPro: IPR0002 | 99.87 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.87 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.86 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.86 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.85 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.85 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.85 | |
| KOG0461|consensus | 522 | 99.85 | ||
| KOG0084|consensus | 205 | 99.84 | ||
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.83 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.83 | |
| KOG0465|consensus | 721 | 99.83 | ||
| KOG2529|consensus | 395 | 99.82 | ||
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.82 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.82 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.82 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.82 | |
| KOG0463|consensus | 641 | 99.81 | ||
| KOG0094|consensus | 221 | 99.81 | ||
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.81 | |
| KOG0458|consensus | 603 | 99.8 | ||
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.79 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.79 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.79 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.79 | |
| KOG0092|consensus | 200 | 99.79 | ||
| KOG0394|consensus | 210 | 99.79 | ||
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.79 | |
| KOG0078|consensus | 207 | 99.78 | ||
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.78 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.78 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.77 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.77 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.77 | |
| KOG0098|consensus | 216 | 99.77 | ||
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.77 | |
| cd03709 | 80 | lepA_C lepA_C: This family represents the C-termin | 99.76 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.76 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.76 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.76 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.76 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.76 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.76 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.76 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.76 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.76 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.75 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.75 | |
| KOG0095|consensus | 213 | 99.75 | ||
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.75 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.75 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.75 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.75 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.75 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.75 | |
| KOG1143|consensus | 591 | 99.75 | ||
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.75 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.75 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.75 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.75 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.75 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.74 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.74 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.74 | |
| cd03710 | 79 | BipA_TypA_C BipA_TypA_C: a C-terminal portion of B | 99.74 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.74 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.74 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.74 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.74 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.74 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.74 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.74 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.74 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.74 | |
| PF00679 | 89 | EFG_C: Elongation factor G C-terminus; InterPro: I | 99.74 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.74 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.74 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.74 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.74 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.74 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.73 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.73 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.73 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.73 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.73 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.73 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.73 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.73 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.73 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.73 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.73 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.73 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.73 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.73 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.73 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.73 | |
| KOG0464|consensus | 753 | 99.73 | ||
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.72 | |
| KOG0466|consensus | 466 | 99.72 | ||
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.72 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.72 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.72 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.72 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.72 | |
| KOG0087|consensus | 222 | 99.72 | ||
| KOG0079|consensus | 198 | 99.72 | ||
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.72 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.72 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.72 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.72 | |
| cd03711 | 78 | Tet_C Tet_C: C-terminus of ribosomal protection pr | 99.72 | |
| smart00838 | 85 | EFG_C Elongation factor G C-terminus. This domain | 99.72 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.72 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.72 | |
| KOG1144|consensus | 1064 | 99.72 | ||
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.72 | |
| KOG0080|consensus | 209 | 99.72 | ||
| cd04097 | 78 | mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elo | 99.72 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.72 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.72 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.72 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.72 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.71 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.71 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.71 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.71 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.71 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.71 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.71 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.71 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.71 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.71 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.71 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.71 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.71 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.71 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.71 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.71 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.71 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.71 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.7 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.7 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.7 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.7 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.7 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.7 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.69 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.69 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.69 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.69 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.69 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.69 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.69 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.69 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.69 | |
| KOG0093|consensus | 193 | 99.69 | ||
| cd04096 | 80 | eEF2_snRNP_like_C eEF2_snRNP_like_C: this family r | 99.69 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.69 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.69 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.69 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.68 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.68 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.68 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.68 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.68 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.68 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.68 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.68 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.68 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.68 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.68 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.68 | |
| KOG0086|consensus | 214 | 99.68 | ||
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.68 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.67 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.67 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.67 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.67 | |
| cd03713 | 78 | EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C- | 99.67 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.67 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.67 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.67 | |
| cd04098 | 80 | eEF2_C_snRNP eEF2_C_snRNP: This family includes a | 99.66 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.66 | |
| cd03702 | 95 | IF2_mtIF2_II This family represents the domain II | 99.66 | |
| cd01514 | 79 | Elongation_Factor_C Elongation factor G C-terminus | 99.66 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.65 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.65 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.65 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.65 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.65 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.65 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.65 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.65 | |
| KOG0463|consensus | 641 | 99.65 | ||
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.64 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.64 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.64 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.64 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.63 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.63 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.63 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.62 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.62 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.62 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.62 | |
| KOG0088|consensus | 218 | 99.62 | ||
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.62 | |
| KOG1143|consensus | 591 | 99.62 | ||
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.61 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.61 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.61 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.6 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.6 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.6 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.6 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.6 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.6 | |
| cd03690 | 85 | Tet_II Tet_II: This subfamily represents domain II | 99.6 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.6 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.59 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.59 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.59 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.59 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.59 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.59 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.59 | |
| KOG0083|consensus | 192 | 99.59 | ||
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.59 | |
| KOG1423|consensus | 379 | 99.59 | ||
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.59 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.58 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.58 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.58 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.58 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.58 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.58 | |
| cd03701 | 95 | IF2_IF5B_II IF2_IF5B_II: This family represents th | 99.58 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.58 | |
| cd03692 | 84 | mtIF2_IVc mtIF2_IVc: this family represents the C2 | 99.58 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.57 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.57 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.57 | |
| KOG0091|consensus | 213 | 99.57 | ||
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.56 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.56 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.56 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.55 | |
| cd04092 | 83 | mtEFG2_II_like mtEFG2_C: C-terminus of mitochondri | 99.54 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.54 | |
| KOG1191|consensus | 531 | 99.54 | ||
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.54 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.54 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.54 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.54 | |
| KOG0459|consensus | 501 | 99.54 | ||
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.53 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.53 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.53 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.53 | |
| KOG0097|consensus | 215 | 99.53 | ||
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.53 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.53 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.53 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.53 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.52 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.52 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.52 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.52 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.52 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.52 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.52 | |
| KOG0466|consensus | 466 | 99.52 | ||
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.52 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.52 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.52 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.51 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.51 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.51 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.51 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.51 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.51 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.51 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.51 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.5 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.5 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.5 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.5 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.5 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.5 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.5 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.5 | |
| cd03691 | 86 | BipA_TypA_II BipA_TypA_II: domain II of BipA (also | 99.5 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.5 | |
| cd04088 | 83 | EFG_mtEFG_II EFG_mtEFG_II: this subfamily represen | 99.5 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.5 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.5 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.5 | |
| KOG0075|consensus | 186 | 99.5 | ||
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.49 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.49 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.49 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.49 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.49 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.49 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.49 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.49 | |
| cd03689 | 85 | RF3_II RF3_II: this subfamily represents the domai | 99.49 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.48 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.48 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.48 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.48 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.48 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.48 | |
| KOG0081|consensus | 219 | 99.48 | ||
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.48 | |
| KOG0395|consensus | 196 | 99.48 | ||
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.47 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.47 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.47 | |
| KOG0073|consensus | 185 | 99.47 | ||
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.46 | |
| KOG1423|consensus | 379 | 99.46 | ||
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.46 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.46 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.46 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.46 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.46 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.46 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.46 | |
| cd04091 | 81 | mtEFG1_II_like mtEFG1_C: C-terminus of mitochondri | 99.46 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.46 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.45 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.45 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.45 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.45 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.45 |
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-174 Score=1465.55 Aligned_cols=600 Identities=59% Similarity=0.987 Sum_probs=592.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
..+||||||+|+|||||||+++||+|+|+++..+.+.+++||++++|+||||||.++++.+.|++++|||+|||||+||+
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG 82 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG 82 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
+|++|.|+|+|+|+|+|||.+|++|||++++++|++.|+++|||+||+|+++|++++++++++++|.++++.++|++||+
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPi 162 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPI 162 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecC
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNG 1159 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~ 1159 (1527)
+|+||+.|++..+......++.+||++|++++|+|..+.++||+|+|+.++|++|+||+++|||++|++++||.|.++..
T Consensus 163 vYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~ 242 (603)
T COG1217 163 VYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKS 242 (603)
T ss_pred EEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcC
Confidence 99999999999988888889999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCCCCCCccCCCceeEEEEecCCCCCCC
Q psy1758 1160 PDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGR 1239 (1527)
Q Consensus 1160 ~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~ 1239 (1527)
+|+....||++++.|.|.+|.++++|.|||||||+|++++.+|||+|+++++++||.+++++||++|.|.+|+|||+|+
T Consensus 243 -~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~igdTi~d~~~~~aLp~l~iDePTlsMtf~vN~SPfAG~ 321 (603)
T COG1217 243 -DGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTICDPDNPEALPALSVDEPTLSMTFSVNDSPFAGK 321 (603)
T ss_pred -CCcEEeeEEEeeeeccceeeeecccccccCEEEEcCcccccccccccCCCCccCCCCcccCCCceEEEEEecCCCCCCc
Confidence 7888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhcCcEEEEecCeeeEEEecceEeeee
Q psy1758 1240 EGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPY 1319 (1527)
Q Consensus 1240 e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrreg~ev~vs~P~V~yre~~g~llEP~ 1319 (1527)
|||++|++++++||.+|++.|+||+|+++++++. |.|+|||||||+||+|+|||||||++||+|+|+|||+||+++|||
T Consensus 322 EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~-f~VsGRGELhLsILiE~MRREGfEl~VsrP~Vi~keidG~~~EP~ 400 (603)
T COG1217 322 EGKFVTSRQIRDRLNKELETNVALRVEETESPDA-FEVSGRGELHLSILIENMRREGFELQVSRPEVIIKEIDGVKCEPF 400 (603)
T ss_pred CCceeeHHHHHHHHHHHhhhceeEEEeecCCCCe-EEEeccceeehHHHHHHhhhcceEEEecCceEEEEecCCcCcCcc
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecccccc
Q psy1758 1320 ENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSK 1399 (1527)
Q Consensus 1320 ~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~ 1399 (1527)
+.++|+||+||+|.||+.|+.|||+|.+|.+.++||+||+|.+|+|+|+||+++|+|+|+|+|+|+|.|++|+|+.
T Consensus 401 E~v~iDv~ee~~G~Vie~lg~RKgem~~M~~~g~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~~---- 476 (603)
T COG1217 401 EEVTIDVPEEHQGAVIEKLGERKGEMKDMAPDGKGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPVK---- 476 (603)
T ss_pred eeEEecCchhhhhHHHHHHhhhhHhHhhcccCCCCeEEEEEEccCcceeccchheeeccccceeeeeccccccccc----
Confidence 9999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred ccccccccceeecCCCchhHHHHHHHHhhcCcccccCccccccceeecccCCCCceeeecccccccccccccCCCcceee
Q psy1758 1400 YDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQL 1479 (1527)
Q Consensus 1400 ~~i~~~~~g~li~~~~g~~~~~~l~~~~~rG~~fv~~~~~vy~gm~~g~~~~~~d~~~n~~~~k~~~~~r~~~~~~~~~~ 1479 (1527)
|+|..|.||+|||+++|+|++|||+++|+||++||.||++||+|||||||||+|||+|||||+||||||||||+|++++|
T Consensus 477 g~i~~R~nGvLiS~~~G~a~~yal~~lqdRG~~Fi~pG~~vYeGmiiG~hsR~nDL~VN~~k~K~LTN~Rasg~Dea~~L 556 (603)
T COG1217 477 GEIGGRHNGVLISNETGKAVAYALFNLQDRGKLFIEPGTKVYEGMIIGEHSRDNDLTVNVLKGKKLTNMRASGKDEAVTL 556 (603)
T ss_pred ccccccccceEEEcCCCcchHhhhhhHHhcCceeecCCCceeeeeEEeeecCccCceeccccccccccccccCCccceEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCHHHHHhcccCCeeEEecCCceeeecccCChHHHHhhhcc
Q psy1758 1480 ISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKKKLHK 1525 (1527)
Q Consensus 1480 ~~~~~~~~e~~~~~~~~de~~e~tp~~~r~rk~~~~~~~~~~~~~~ 1525 (1527)
+||+.||||+|||||+|||||||||+||||||++|++++|||+.|+
T Consensus 557 ~~p~~mtLE~Ale~i~dDElvEVTP~sIRlRK~~L~~n~Rkr~~k~ 602 (603)
T COG1217 557 TPPIRMTLERALEFIADDELVEVTPESIRLRKKILNENERKRAEKR 602 (603)
T ss_pred cCcccccHHHHHhhcCCCceEEecchHeehhhhhcChhhhhhhhcc
Confidence 9999999999999999999999999999999999999999998774
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-143 Score=1341.88 Aligned_cols=594 Identities=57% Similarity=0.961 Sum_probs=574.7
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
+|||||+||+|||||||+++|++++|.+.+.+.+++++||++++|++||+|+.++..++.|+++++||||||||.||.++
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGE 80 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHH
Confidence 69999999999999999999999999999888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEEE
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIY 1081 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~ 1081 (1527)
++++++++|+++|||||.+|+++||+++|..+.+.++|+|+|+||+|+++++++++.+++.++|..++..++++.+|+++
T Consensus 81 v~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~ 160 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVY 160 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEe
Confidence 99999999999999999999999999999999999999999999999998899999999999998887777778899999
Q ss_pred eccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCC
Q psy1758 1082 TSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPD 1161 (1527)
Q Consensus 1082 ~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~ 1161 (1527)
+||++|++..+......|+.+||+.|++++|+|..+.++||+++|+++++++|.|++++|||++|+|++||.|.+.+. +
T Consensus 161 ~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~-~ 239 (594)
T TIGR01394 161 ASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKR-D 239 (594)
T ss_pred chhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecC-C
Confidence 999999876655555678999999999999999888899999999999999999999999999999999999999877 4
Q ss_pred CCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCCCCCCccCCCceeEEEEecCCCCCCCCC
Q psy1758 1162 DKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREG 1241 (1527)
Q Consensus 1162 g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~ 1241 (1527)
++....+|++|+.+.|.++.++++|.|||||+++|++++.+|||||+++++.+||++++++|+++|+|.||++|++|+|+
T Consensus 240 ~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~~~e~ 319 (594)
T TIGR01394 240 GTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEVPEALPTITVDEPTLSMTFSVNDSPLAGKEG 319 (594)
T ss_pred CceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCcccCCCCEEeCCCccccCCCCCCCCCeEEEEEEecCCCcccccc
Confidence 44345799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhcCcEEEEecCeeeEEEecceEeeeeEE
Q psy1758 1242 KFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYEN 1321 (1527)
Q Consensus 1242 ~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrreg~ev~vs~P~V~yre~~g~llEP~~~ 1321 (1527)
|++|+++|++||.||+++||||+|++++++++ |+|+|||||||+|++|+|||||+|+++++|+|+|||++|++||||++
T Consensus 320 k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~-~~v~g~GelHL~il~e~lrreg~e~~~~~P~V~yrei~g~llEPi~~ 398 (594)
T TIGR01394 320 KKVTSRHIRDRLMRELETNVALRVEDTESADK-FEVSGRGELHLSILIETMRREGFELQVGRPQVIYKEIDGKKLEPIEE 398 (594)
T ss_pred hhhhHHHHHHHHHHhhccCCeEEEEEecCCCe-EEEEEECHHHHHHHHHHHhccCceEEEeCCEEEEEeCCCeEECCEEE
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecccccccc
Q psy1758 1322 LFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYD 1401 (1527)
Q Consensus 1322 ~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~ 1401 (1527)
++|+||+||+|+||++|++|||+|++|++.++++++|+|.+|+|||+||+++|+|+|+|+|+|+++|+||+|++ |+
T Consensus 399 ~~i~vp~e~~G~v~~~l~~RrG~~~~~~~~~~~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~----~~ 474 (594)
T TIGR01394 399 LTIDVPEEHVGAVIEKLGKRKGEMVDMEPSGNGRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWK----GE 474 (594)
T ss_pred EEEEechHHHHHHHHHHHHhCCEEeccEECCCCEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeCC----Cc
Confidence 99999999999999999999999999999767899999999999999999999999999999999999999998 99
Q ss_pred ccccccceeecCCCchhHHHHHHHHhhcCcccccCccccccceeecccCCCCceeeecccccccccccccCCCcceeecC
Q psy1758 1402 LGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLIS 1481 (1527)
Q Consensus 1402 i~~~~~g~li~~~~g~~~~~~l~~~~~rG~~fv~~~~~vy~gm~~g~~~~~~d~~~n~~~~k~~~~~r~~~~~~~~~~~~ 1481 (1527)
+..|.||+|||+++|++|+|||+++|+||+|||.||++||+|||||||+|+|||+|||||+||||||||||+|++++|+|
T Consensus 475 i~~~~~g~~~~~~~g~~~~~~~~~~~~rg~~f~~~~~~vy~g~i~g~~~~~~d~~~n~~~~k~~~n~r~~~~~~~~~~~~ 554 (594)
T TIGR01394 475 IETRRNGSLVSMEDGTATAYALWNLQERGVMFVSPGTEVYEGMIIGEHSRENDLDVNPCKAKKLTNVRSSGKDEAVKLTP 554 (594)
T ss_pred CCCCCceeEEECCCCcChHhhhhchhhcccEEeCCCCceeCceEEEeecCcCCcEEecccccccccccccCCCcceeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCHHHHHhcccCCeeEEecCCceeeecccCChHHHHh
Q psy1758 1482 PIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKK 1521 (1527)
Q Consensus 1482 ~~~~~~e~~~~~~~~de~~e~tp~~~r~rk~~~~~~~~~~ 1521 (1527)
||.||||+|||||+|||||||||++|||||++|++++|||
T Consensus 555 ~~~~~le~~~~~~~~de~~evtp~~~r~rk~~l~~~~r~~ 594 (594)
T TIGR01394 555 PRKLSLEQALEYIEDDELVEVTPKSIRLRKRVLDPNERKR 594 (594)
T ss_pred CccCCHHHHHhhccCCeEEEECchHeEEehhhCCHhhcCC
Confidence 9999999999999999999999999999999999999975
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-141 Score=1323.99 Aligned_cols=601 Identities=56% Similarity=0.937 Sum_probs=577.4
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
+++|||+|+||+|||||||+++|++++|.+.+...+.+++||+++.|+++|+|+.++...+.|+++++||||||||.+|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 57899999999999999999999999999988777778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
+++.++++.+|++|||||+.+|+++||+++|..+.+.++|.|+|+||+|++++++++++++++++|..++....+.++|+
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PV 162 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPI 162 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999977766666788999
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecC
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNG 1159 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~ 1159 (1527)
+++||++|++..+......|+.+||++|++++|+|..+.++||+++||++++++|.|++++|||++|+|++||.|.+.+.
T Consensus 163 i~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~ 242 (607)
T PRK10218 163 VYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDS 242 (607)
T ss_pred EEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecC
Confidence 99999999976655555568999999999999999888899999999999999999999999999999999999999866
Q ss_pred CCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCCCCCCccCCCceeEEEEecCCCCCCC
Q psy1758 1160 PDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGR 1239 (1527)
Q Consensus 1160 ~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~ 1239 (1527)
+++...+||++|+.+.|.++.++++|.|||||+++|++++.+|||||+++++.++|++++++|+++|+|.+|+|||+|+
T Consensus 243 -~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~~~l~~~~~~~P~~~~~~~~~~sp~~g~ 321 (607)
T PRK10218 243 -EGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGK 321 (607)
T ss_pred -CCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECccccccCcEEecCCCcccCCCCCCCCCeEEEEEEeCCCccccc
Confidence 3433458999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhcCcEEEEecCeeeEEEecceEeeee
Q psy1758 1240 EGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPY 1319 (1527)
Q Consensus 1240 e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrreg~ev~vs~P~V~yre~~g~llEP~ 1319 (1527)
++|++|+++++++|.+|+++||||+|++++++++ |+|+|||||||+|++|+|||||+|+++++|+|+|||++|++||||
T Consensus 322 e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~-~~v~g~GelHL~il~e~lrreg~e~~~~~P~V~yret~g~klEPi 400 (607)
T PRK10218 322 EGKFVTSRQILDRLNKELVHNVALRVEETEDADA-FRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPY 400 (607)
T ss_pred hhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCe-EEEEEEcHHHHHHHHHHHHhCCceEEEeCCEEEEEEECCEEeCCe
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecccccc
Q psy1758 1320 ENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSK 1399 (1527)
Q Consensus 1320 ~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~ 1399 (1527)
++++|+||+||+|+||++|++|||+|++|++.++++++|+|.+|+|||+||+++|+|+|+|+|+|++.|+||+|++ .
T Consensus 401 ~~v~i~vP~e~~G~V~~~l~~RrG~~~~m~~~~~~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~---~ 477 (607)
T PRK10218 401 ENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVR---P 477 (607)
T ss_pred EEEEEEechhhHHHHHHHHHhcCCEEeccEECCCCEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccCCC---C
Confidence 9999999999999999999999999999998766899999999999999999999999999999999999999998 5
Q ss_pred ccccccccceeecCCCchhHHHHHHHHhhcCcccccCccccccceeecccCCCCceeeecccccccccccccCCCcceee
Q psy1758 1400 YDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQL 1479 (1527)
Q Consensus 1400 ~~i~~~~~g~li~~~~g~~~~~~l~~~~~rG~~fv~~~~~vy~gm~~g~~~~~~d~~~n~~~~k~~~~~r~~~~~~~~~~ 1479 (1527)
|++..|++|+|||++.|++|+|||+++|+||+|||.||++||+|||||||+|+|||+|||||+||||||||+|+|++++|
T Consensus 478 g~~~~~~~g~~~~~~~g~~~~~~l~~~~~rg~~f~~~~~~vy~gmivg~~~~~~d~~vn~~~~k~~tn~r~~~~~~~~~l 557 (607)
T PRK10218 478 GEVGQRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVL 557 (607)
T ss_pred CCCCCccceEEEECCCCcCHHHhhhhhhhccceeecCCCcEecceEEeeecCcCCceeccccccccccccccCCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCHHHHHhcccCCeeEEecCCceeeecccCChHHHHhhhcc
Q psy1758 1480 ISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKKKLHK 1525 (1527)
Q Consensus 1480 ~~~~~~~~e~~~~~~~~de~~e~tp~~~r~rk~~~~~~~~~~~~~~ 1525 (1527)
+|||.||||+|||||+|||||||||++|||||++|++++|||++|.
T Consensus 558 ~~~~~~~le~~~~~~~~de~~evtp~~~r~rk~~l~~~~r~~~~~~ 603 (607)
T PRK10218 558 VPPIRMTLEQALEFIDDDELVEVTPTSIRIRKRHLTENDRRRANRA 603 (607)
T ss_pred cCCccCCHHHHHhhccCCeEEEECchHeEEeehhCCHhHHHHhhhc
Confidence 9999999999999999999999999999999999999999998764
|
|
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-104 Score=912.28 Aligned_cols=560 Identities=31% Similarity=0.411 Sum_probs=512.4
Q ss_pred cccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC---eEEEEEeC
Q psy1758 916 DENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG---TRINIIDT 992 (1527)
Q Consensus 916 q~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~---~~iniiDT 992 (1527)
..|.+++||++||+|+|||||||+++||..+|.+.+.. -.+++||+.++||||||||.++++++.|++ |.+|||||
T Consensus 54 ~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~-~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDT 132 (650)
T KOG0462|consen 54 LDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNI-GQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDT 132 (650)
T ss_pred cCchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCC-chhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecC
Confidence 44568999999999999999999999999999776543 356899999999999999999999999998 99999999
Q ss_pred CCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 993 PGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 993 PGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
|||.||++||.|.+.+||||||||||.+|+++||.+.+.+|.+.|+.+|.|+||+|++.++++++..+++++|....+
T Consensus 133 PGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~-- 210 (650)
T KOG0462|consen 133 PGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPA-- 210 (650)
T ss_pred CCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCcc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999854333
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQ 1152 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd 1152 (1527)
+++++||++|+ |++.+|++|++++|+|....++||+|++|++|||.|.|+|+++||.+|.+++||
T Consensus 211 -----~~i~vSAK~G~----------~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGd 275 (650)
T KOG0462|consen 211 -----EVIYVSAKTGL----------NVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGD 275 (650)
T ss_pred -----ceEEEEeccCc----------cHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCC
Confidence 58999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEec-ceecccCCeeeCCCCCCCCCCCccCCCceeEEEEe
Q psy1758 1153 DVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITG-IEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMV 1231 (1527)
Q Consensus 1153 ~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~g-l~~~~iGdTi~~~~~~~~l~~~~~~~P~l~~~~~~ 1231 (1527)
.|..+.+ ++.+..++-.++.+..-...+++...+|+|++..+ ++++.+||||++.....++|.++-.+|+.+|+| +
T Consensus 276 kV~~~~t--~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~~~v~tl~~~~~~~pMvF-v 352 (650)
T KOG0462|consen 276 KVQSAAT--GKSYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVTKAVETLPGFEPTKPMVF-V 352 (650)
T ss_pred EEEEeec--CcceEeEEeEEeccCceeeeeecccccceeEecccccccccccceeeecccCcccCcCCCCCCCcceEE-e
Confidence 9999987 55566677777666665556666677778887766 889999999999886666777777779999999 8
Q ss_pred cCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCC--CCeEEEEecchhHHHHHHHHHHhc-CcEEEEecCeeeE
Q psy1758 1232 NNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHD--DSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIF 1308 (1527)
Q Consensus 1232 ~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~--~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs~P~V~y 1308 (1527)
+.+|++|+| +..++++++|+..||.++.+..+.+. ++||+|+|+|+|||+|++|||+|| |+|+.+++|+|+|
T Consensus 353 g~fP~dgsd-----~~~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Eyg~elivt~PtV~Y 427 (650)
T KOG0462|consen 353 GLFPLDGSD-----YETLRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREYGAELIVTPPTVPY 427 (650)
T ss_pred ccccCccch-----hhhHHHHHHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhcCceeeecCCcceE
Confidence 999999987 46778999999999999999998654 899999999999999999999999 9999999999999
Q ss_pred EEe--cc------------------eEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhc
Q psy1758 1309 KTL--NG------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLI 1368 (1527)
Q Consensus 1309 re~--~g------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~ 1368 (1527)
|-. +| ..||||+.++|.+|+||+|.||++|+.|||++.+|.+.++.++.|.|.+|+|||+
T Consensus 428 r~~~~~~~~~~i~np~~fp~~~~v~~~lEP~v~~tii~P~Ey~G~Vi~Lc~~rRgeq~dm~~i~~nr~~lky~lPl~elv 507 (650)
T KOG0462|consen 428 RVVYSNGDEILISNPALFPDPSDVKEFLEPYVEATIITPDEYVGAVIELCSERRGEQKDMTYIDGNRVMLKYQLPLRELV 507 (650)
T ss_pred EEEecCCceeeecChhhCCCcccchhhcCceEEEEEECcHHHHHHHHHHHHHhhhheecceeccCCeEEEEEecChHHHH
Confidence 974 22 4699999999999999999999999999999999999977899999999999999
Q ss_pred C-hHHHHccccceeEEEEeEecceeeccccccccccccccceeecCCCchhHHHHHHHHhhcCcccccCccccccceeec
Q psy1758 1369 G-FQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIG 1447 (1527)
Q Consensus 1369 g-~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~~~~~g~li~~~~g~~~~~~l~~~~~rG~~fv~~~~~vy~gm~~g 1447 (1527)
| |+..|+|.|+|||+|+|+|++|++ +++.+..-+++.++.++.+|.+.+..+++||+.||.++-+.|++|++|
T Consensus 508 ~df~~~lks~tsGyAs~dye~~gY~~------sdLvkldil~n~~~vd~l~tivh~~~a~~rGr~~v~klk~~ip~Q~~e 581 (650)
T KOG0462|consen 508 GDFFDRLKSLTSGYASFDYEDAGYQA------SDLVKLDILLNGKMVDGLSTIVHLSKAESRGREFVQKLKDLIPRQIFE 581 (650)
T ss_pred HHHHHHHhccccceeEEeeccccccc------ccceEEEeeccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhcchhhhh
Confidence 8 999999999999999999999996 668877666666666666666666689999999999999999999999
Q ss_pred ccCCCCceeeecccccccccccccCCCcceeecCCcccCHHHHHhcccCCeeEEecCCceeeec
Q psy1758 1448 IHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRK 1511 (1527)
Q Consensus 1448 ~~~~~~d~~~n~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~de~~e~tp~~~r~rk 1511 (1527)
.|.++-|..-|+||++-. +..+|...+|-+|..++++.+|+|..+|++.|+||.+||++|
T Consensus 582 v~iqa~igsk~iare~i~----a~rKdv~akl~ggdv~r~~klL~~q~egkk~mk~vgnI~ipk 641 (650)
T KOG0462|consen 582 VHIQACIGSKNIARETIS----AYRKDVLAKLYGGDVTRLKKLLKKQAEGKKRMKTVGNIRIPK 641 (650)
T ss_pred hhhhhhcccchhhHHHHH----HhccceeeEecCCchhhHHHHHHhhhcCceeeeccccEecCH
Confidence 999999999999999877 899999999999999999999999999999999999999998
|
|
| >KOG1145|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-98 Score=866.40 Aligned_cols=558 Identities=42% Similarity=0.651 Sum_probs=486.2
Q ss_pred CCCHHHHHHHHHhCCCccCc---cccCCHHHHHHHHHhcCCceeecCCCCch-hhhh----hhcccCcccccccCCCEEE
Q psy1758 2 SVKSSVVIKNLMKLGQMVTI---NQVLDQETAMILVEEMGHVAHASKLNDPE-SFLL----NEYNKNITAESLVRAPIVT 73 (1527)
Q Consensus 2 ~~~~~~~i~~l~~~g~~~~~---~~~l~~~~~~~~a~~~g~~~~~~~~~~~~-~~~~----~~l~~~~~~~~~~r~~~V~ 73 (1527)
+....++.+.|...|...++ ...+|.-.+..+++.++............ .+.. ...++.+.....+|||+|+
T Consensus 78 ~~~~~~v~e~l~sv~~a~~~~~~~~~ld~~~I~ev~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~a~p~~l~~RpPVVT 157 (683)
T KOG1145|consen 78 KCSVDEVQEALLSVGFAYNLAIADSNLDTKGILEVVELILMKYRFVLLPAETSVEEKAADVAPQPEADPKLLEPRPPVVT 157 (683)
T ss_pred cCCHHHHHHHHHhccccccccccccccchHHHHHHHHHHhhccccccCChhhhhhhhhhhcccCCccCHhhcCCCCCeEE
Confidence 45667888899888884332 34566555555544444332211111111 0111 1112334556778999999
Q ss_pred EEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC-CeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC
Q psy1758 74 IMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN-HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG 152 (1527)
Q Consensus 74 IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~-~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g 152 (1527)
||||++||||||+++|++..++..+.+||||+++++.+... |..++|+|||||+.|..||.|+++.+|+++||++++||
T Consensus 158 iMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDG 237 (683)
T KOG1145|consen 158 IMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDG 237 (683)
T ss_pred EeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCC
Confidence 99999999999999999999999999999999999998875 45899999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHHHHH
Q psy1758 153 VMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEI 232 (1527)
Q Consensus 153 ~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~ 232 (1527)
+++||.+.+.+++..++|+|+++||||+++++++++.+++..++...+++|++++++++||++|.|++.|.+++..+++.
T Consensus 238 VmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~ 317 (683)
T KOG1145|consen 238 VMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEV 317 (683)
T ss_pred ccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceeeeEeEeeccCCceeeecCCCcceEecCCCCC
Q psy1758 233 LELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEIQGLTKV 312 (1527)
Q Consensus 233 ~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~ 312 (1527)
+++++.+..|++++|+|+..++++|.++|++|++|||+.|+.+++|.+++|||.|++++|+.+.+|.||+|+.|.||+++
T Consensus 318 mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~G~~w~KVr~l~D~nGk~i~~A~Ps~pv~V~Gwkdl 397 (683)
T KOG1145|consen 318 MDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVAGKSWCKVRALFDHNGKPIDEATPSQPVEVLGWKDL 397 (683)
T ss_pred hhcccCCCCCceEEEEEeeecCCccceeEEEEeccccccccEEEEechhhhhhhhhhcCCCCccccCCCCceEeecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEeCChhHHHHHHHHhhhchHHHHH------HHHhhhhh-hhHHH------------hhcc-ccceeEeEEEE
Q psy1758 313 PFSGEELFVILNEKKAREIGLFRQGKFRDVKL------SKQKLHKT-ENMFN------------DINK-EKVKNLLIIIK 372 (1527)
Q Consensus 313 ~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~------------~~~~-~~~~~~~~iiK 372 (1527)
|.+||.++.+++|++|+++.+.|+...+.++. .+.+.... +.+.+ ++.. ...+.+|+|||
T Consensus 398 P~aGD~vleVeSe~~Ar~~~~~R~~~~~~Ek~~~~~e~~~~~~~~~~~~~~a~r~~~~~~~~~~~v~~~~~~~~~niIiK 477 (683)
T KOG1145|consen 398 PIAGDEVLEVESEDRARKVLSKRKDESEQEKISRDLEDIEEQREEAAEALLAKREEGENIGRKTRVELHEQNPLFNIIIK 477 (683)
T ss_pred CCCCceEEEEecHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhccccceecccccCCcceEEEEE
Confidence 99999999999999999999988754333221 11111110 11110 0111 12255999999
Q ss_pred eccCCcHHHHHHHHHhcCCCceeeeEEeeccCcCChhhHHHHHhcCCEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHH
Q psy1758 373 TDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADASTRKLAQINNINIRYHNIIYNI 452 (1527)
Q Consensus 373 ad~~Gs~eAi~~~l~~~~~~~v~i~iv~~~vG~it~~Dv~~A~~~~a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l 452 (1527)
+|++||+||+.++|+.|++++|++++++++||+||++|+++|+++.|+|+||||+.++..+++|++.||+|+.|||||+|
T Consensus 478 ~DV~GS~EAv~d~L~tl~~~~v~l~~v~~gVG~vtesDlelA~~~daiI~~FnV~~~~~~~~~a~~~gVkI~~~nVIY~L 557 (683)
T KOG1145|consen 478 CDVQGSAEAVLDALSTLNSEQVKLNVVHSGVGPVTESDLELAQASDAIIYGFNVKASPSVKQLAAAKGVKIRLYNVIYRL 557 (683)
T ss_pred ecccchHHHHHHHHhhcCCCceEEEEEEeccCCCCcchhHHHHhcCcEEEEEecCCChHHHHHHhccCceEeehhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeeeeeEeEEEeEEEEcCC---CCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccc
Q psy1758 453 IKEIKSEITNLIPLEKKENLLGLAEIRQVILVNK---VSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDN 529 (1527)
Q Consensus 453 ~~~~~~~~~~~l~~~~~e~~~g~a~v~~vF~~~k---~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~ 529 (1527)
|||+++.|.+.|||..++.++|+|+|++.|.++. +-.||||+|.+|.+++++.+|+.|||++||+|.|.||||.|+|
T Consensus 558 ieDv~~~ls~rlp~v~e~~vvGea~Vl~~F~i~~~rkr~~VAGC~V~~G~~~K~~~~rlvR~g~vV~~G~l~SlKh~Ked 637 (683)
T KOG1145|consen 558 IEDVRELLSERLPPVEEQEVVGEAEVLATFDIREKRKRVPVAGCRVNNGVIKKSCKIRLVRNGKVVFEGELDSLKHLKED 637 (683)
T ss_pred HHHHHHHHHhhCCCceEEeeccceeeeeeEeeccccccccccceEeecceEeecceEEEEeCCcEEEEechhHHhhhhhh
Confidence 9999999999999999999999999999999863 2359999999999999999999999999999999999999999
Q ss_pred cceeecCccccccchhhh-hhhhhhHHhhhhh
Q psy1758 530 VKEVKAGFECERLSRIEN-QIQRDISEIIAFD 560 (1527)
Q Consensus 530 V~ev~~G~ecgr~~r~~~-~i~~~Iseii~~e 560 (1527)
|++|++|.|||+.++.++ +|+.. +.+.+++
T Consensus 638 V~~vkkg~ECGl~~~d~~~~f~~G-D~i~~ye 668 (683)
T KOG1145|consen 638 VTEVKKGHECGLTFDDGNEDFKEG-DKIQCYE 668 (683)
T ss_pred hhhhcCCCeeeeEeccCCcCCCcC-CEEEEee
Confidence 999999999999999998 77764 5444444
|
|
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-94 Score=916.35 Aligned_cols=542 Identities=59% Similarity=0.904 Sum_probs=505.6
Q ss_pred CCCCHHHHHHHHHhCCCccCccccCCHHHHHHHHHhcCCceeecCCCCchhhhhhhcccCcccccccCCCEEEEEecCCC
Q psy1758 1 MSVKSSVVIKNLMKLGQMVTINQVLDQETAMILVEEMGHVAHASKLNDPESFLLNEYNKNITAESLVRAPIVTIMGHVDH 80 (1527)
Q Consensus 1 ~~~~~~~~i~~l~~~g~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~V~IvG~~~~ 80 (1527)
|++++.+||+.||.+|+++++||.||.+.++++|++||+........+ .....+...|+|+|+++||+||
T Consensus 232 ~~~~~~~ii~~l~~~g~~~~~n~~l~~~~~~~i~~e~g~~~~~~~~~~----------~~~~~~~~~R~pvV~ImGhvd~ 301 (787)
T PRK05306 232 MAVKAAEVIKKLFKLGVMATINQSLDQETAELLAEEFGHEVKLVSLLE----------DDDEEDLVPRPPVVTIMGHVDH 301 (787)
T ss_pred HCCCHHHHHHHHHHcCCeecCCCccCHHHHHHHHHHcCCEEEEccccc----------cccccccccCCCEEEEECCCCC
Confidence 789999999999999999999999999999999999999876543322 1123356789999999999999
Q ss_pred ChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHH
Q psy1758 81 GKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREA 160 (1527)
Q Consensus 81 GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~ 160 (1527)
|||||+++|+...+..++.+|+|++++.+.+.+++..++|||||||++|..++.++++.+|++|||||+++++.+||.++
T Consensus 302 GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~ 381 (787)
T PRK05306 302 GKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEA 381 (787)
T ss_pred CHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHH
Confidence 99999999999988888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCCC
Q psy1758 161 IAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVT 240 (1527)
Q Consensus 161 i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~ 240 (1527)
|.++...++|+|||+||+|+...+.+.+..++.......+.|++.++++++||++|.||++|+++|....+..+++.+++
T Consensus 382 i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~~e~~~l~~~~~ 461 (787)
T PRK05306 382 INHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQAEVLELKANPD 461 (787)
T ss_pred HHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhhhhhhhcccCCC
Confidence 99999999999999999999877777776666666666677887889999999999999999999988776667777788
Q ss_pred CCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceeeeEeEeeccCCceeeecCCCcceEecCCCCCCCCCCeEE
Q psy1758 241 TPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELF 320 (1527)
Q Consensus 241 ~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~ 320 (1527)
.|+.+.|++++.+++.|++++++|++|+|++||.|++|+.+++|++|+..++..+.+|+||++|.|.||+.+|.+||.|+
T Consensus 462 ~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g~~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~ 541 (787)
T PRK05306 462 RPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGTTYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGVPQAGDEFV 541 (787)
T ss_pred CCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEEEECCcEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEe
Q psy1758 321 VILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIH 400 (1527)
Q Consensus 321 ~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~ 400 (1527)
++.++++|++++.+|+...++..+.+.....+++++..+.++..+.+++|||||++||+|||.++|.+|++++++++|++
T Consensus 542 ~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i~~ 621 (787)
T PRK05306 542 VVEDEKKAREIAEYRQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNIIH 621 (787)
T ss_pred EcCCHHHHHHHHHHHHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEEEe
Confidence 99999999999999988776666655556678888877777777889999999999999999999999999999999999
Q ss_pred eccCcCChhhHHHHHhcCCEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHHHHHHHHHHhccCCcceeeeeeEeEEEeE
Q psy1758 401 NAVGNINESDINLAIASKAIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGLAEIRQ 480 (1527)
Q Consensus 401 ~~vG~it~~Dv~~A~~~~a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~l~~~~~e~~~g~a~v~~ 480 (1527)
++||+||++||.+|++++|+||||||++++.++++|++.||+|++|||||+|+|+++++|+++|+|+++|+++|+|+|++
T Consensus 622 ~~vG~it~~Dv~la~~~~a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d~~~~~~~~~l~~~~~e~~~g~a~v~~ 701 (787)
T PRK05306 622 SGVGAITESDVTLAAASNAIIIGFNVRPDAKARKLAEQEGVDIRYYSIIYDLIDDVKAAMSGMLEPEYEEEIIGQAEVRE 701 (787)
T ss_pred eccCCCCHHHHHHHHhcCCEEEEEcCCCCHHHHHHHHHcCCEEEEeChHHHHHHHHHHHHhhccCchhheeeeeeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccccchhhhhhhhh
Q psy1758 481 VILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLSRIENQIQRD 552 (1527)
Q Consensus 481 vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~r~~~~i~~~ 552 (1527)
+|++++.|+||||+|++|+|++|+.+||+|||++||+|+|.||||+|+||+||++|+|||+.+..|++|+..
T Consensus 702 vF~~~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~~d~~~g 773 (787)
T PRK05306 702 VFKVSKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLENYNDIKEG 773 (787)
T ss_pred EEecCCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEeeccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999873
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-94 Score=894.25 Aligned_cols=550 Identities=55% Similarity=0.840 Sum_probs=500.9
Q ss_pred CCCCHHHHHHHHHhCCCccCccccCCHHHHHHHHHhcCCceeecCCCCchhhhhhhcccCcccccccCCCEEEEEecCCC
Q psy1758 1 MSVKSSVVIKNLMKLGQMVTINQVLDQETAMILVEEMGHVAHASKLNDPESFLLNEYNKNITAESLVRAPIVTIMGHVDH 80 (1527)
Q Consensus 1 ~~~~~~~~i~~l~~~g~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~V~IvG~~~~ 80 (1527)
|++++.+|++.|+.+|+++++||.||.+.++++|++||+........+.... .. ..+........|+|+|+++||+||
T Consensus 21 ~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~r~p~V~I~Ghvd~ 98 (587)
T TIGR00487 21 MNIKVSDIIKKLMLLGVMVTINQVLDKETAELVAEEFGVKVEVRVTLEETEA-EE-QDEDSGDLLVERPPVVTIMGHVDH 98 (587)
T ss_pred HCcCHHHHHHHHHHCCCEecCCcCcCHHHHHHHHHHhCCceEEeccchhhhh-hc-cccccccccccCCCEEEEECCCCC
Confidence 7899999999999999999999999999999999999987654322221111 11 112223456789999999999999
Q ss_pred ChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe-EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHH
Q psy1758 81 GKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG-SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTRE 159 (1527)
Q Consensus 81 GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~-~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e 159 (1527)
|||||+++|++..+...+.+|+|+++..+.+.+++. .++|||||||++|..++.++++.+|++++|+|++++..+|+.+
T Consensus 99 GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e 178 (587)
T TIGR00487 99 GKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIE 178 (587)
T ss_pred CHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHH
Confidence 999999999999988888899999999999988665 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCC
Q psy1758 160 AIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPV 239 (1527)
Q Consensus 160 ~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~ 239 (1527)
++..+...++|+++++||+|+.+.+.++....+...+.....|++..+++++||++|.|+++|+++|..+.+...++.++
T Consensus 179 ~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~~~~~~~l~~~~ 258 (587)
T TIGR00487 179 AISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILLQSEVEELKANP 258 (587)
T ss_pred HHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhhhhhhccccCCC
Confidence 99999999999999999999987776666666655555566677778999999999999999999998777666667777
Q ss_pred CCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceeeeEeEeeccCCceeeecCCCcceEecCCCCCCCCCCeE
Q psy1758 240 TTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEEL 319 (1527)
Q Consensus 240 ~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~ 319 (1527)
+.|+++.|++++.+++.|++++++|++|+|++||.|++|+.++|||+|+..+++.+++|.||+++.|.||+.+|.+||.|
T Consensus 259 ~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~~~~~kVr~l~~~~g~~v~~a~~g~~v~i~Gl~~~p~aGd~~ 338 (587)
T TIGR00487 259 NGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVGAAYGRVRAMIDENGKSVKEAGPSKPVEILGLSDVPAAGDEF 338 (587)
T ss_pred CCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEECCCccEEEEEECCCCCCCCEECCCCEEEEeCCCCCCCCCCEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEE
Q psy1758 320 FVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVI 399 (1527)
Q Consensus 320 ~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv 399 (1527)
+++.++++|++++++|+.+.++..+.+.....++++...+.++..+.+++|||||++||+|||.++|+++++++++++|+
T Consensus 339 ~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~ 418 (587)
T TIGR00487 339 IVFKDEKDARLVAEKRAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVI 418 (587)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHHhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEE
Confidence 99999999999999998766555444433456777777777777889999999999999999999999999999999999
Q ss_pred eeccCcCChhhHHHHHhcCCEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHHHHHHHHHHhccCCcceeeeeeEeEEEe
Q psy1758 400 HNAVGNINESDINLAIASKAIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGLAEIR 479 (1527)
Q Consensus 400 ~~~vG~it~~Dv~~A~~~~a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~l~~~~~e~~~g~a~v~ 479 (1527)
+++||+||++||++|++++|+||||||+++++++++|++.||+|++|||||||+|+++++|+++++|+++|+++|+|+|+
T Consensus 419 ~~~vG~i~~~Dv~~a~~~~a~i~~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d~~~~~~~~~~~~~~~~~~~g~a~v~ 498 (587)
T TIGR00487 419 HSGVGGITETDISLASASNAIIIGFNVRPDATAKNVAEAENVDIRYYSVIYKLIDEIRAAMKGMLDPEYEEEIIGQAEVR 498 (587)
T ss_pred EeecCCCchhhHHHHHhcCCEEEEEecCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhccCcceeeEeeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccccchhhhhhhhh
Q psy1758 480 QVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLSRIENQIQRD 552 (1527)
Q Consensus 480 ~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~r~~~~i~~~ 552 (1527)
++|+++|.|+||||+|++|++++|+++||+|||++||.|+|.||||+|+||+||++|+|||+.++.|++|+..
T Consensus 499 ~vf~~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~~~~~~g 571 (587)
T TIGR00487 499 QVFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKNYNDIKEG 571 (587)
T ss_pred EEEecCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEeccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998874
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-93 Score=844.04 Aligned_cols=487 Identities=54% Similarity=0.860 Sum_probs=467.0
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC---CeEEEEEeCCChhhHHHHHHhhccccCE
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN---HGSITFLDTPGHEAFTAMRARGAKVTDI 142 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~---~~~i~~iDTPG~e~f~~~~~~~~~~aD~ 142 (1527)
..|+|.|++|||++||||||++.++++++...+.+||||+++.+.+.++ ...++|+|||||+.|..||.|+++.+|+
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI 81 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI 81 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence 3689999999999999999999999999999999999999999999985 4689999999999999999999999999
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 143 VVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 143 ~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
++||+|++||++|||.|.+.+++..++|+||++||+|++++++++...++.+.++.++.|++.+.++++||++|+|+++|
T Consensus 82 aILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eL 161 (509)
T COG0532 82 AILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDEL 161 (509)
T ss_pred EEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceeeeEeEeeccCCceeeecCCCc
Q psy1758 223 LENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSI 302 (1527)
Q Consensus 223 ~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~kVr~i~~~~g~~v~~a~~~~ 302 (1527)
++.+..+++..+++..++.++.+.++++..++|.|++++++|++|||++||.+++|..+++|+.|.+..+++++.++|+.
T Consensus 162 L~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~g~~~g~I~t~v~~~~~~i~~a~ps~ 241 (509)
T COG0532 162 LELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAGGEYGRVRTMVDDLGKPIKEAGPSK 241 (509)
T ss_pred HHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEecCCEEEEccCCCceEEeehhcCCCccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhc-cccceeEeEEEEeccCCcHHH
Q psy1758 303 PVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDIN-KEKVKNLLIIIKTDVYGSREV 381 (1527)
Q Consensus 303 ~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iiKad~~Gs~eA 381 (1527)
++.+.|++++|.+|+.+.++.+++.|++++..|....++..........+++++.++. +.+.+.+|+|+|||++||+||
T Consensus 242 ~v~i~g~~evp~Ag~~~~v~~~e~~A~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~viiKaDt~GSlEA 321 (509)
T COG0532 242 PVEILGLSEVPAAGDVFIVVKDEKKARAIAELRVVLLREAELASKKKGELEELIAEIKIRGELKELNVILKADTQGSLEA 321 (509)
T ss_pred CeEEeccccccccCceEEecCChHHHhhhhhHhhhhhhhhhhhhHHHHHHHHHHHhhhccCCcceecEEEEEcccchHHH
Confidence 9999999999999999999999999999999987653333333444567777777765 556889999999999999999
Q ss_pred HHHHHHhcCCCceeeeEEeeccCcCChhhHHHHHhcCCEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHHHHHHHHHHh
Q psy1758 382 LTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEIT 461 (1527)
Q Consensus 382 i~~~l~~~~~~~v~i~iv~~~vG~it~~Dv~~A~~~~a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~ 461 (1527)
|.++|.++..++++++|++++||+||++||.+|++++|+||||||+++++++++|++.+|+|++|||||||+|+++++|+
T Consensus 322 L~~~L~~~~~~~v~~~i~~~~VG~ite~DV~lA~as~avIigFnV~~~~~a~~~ae~~~V~I~~~~iIY~lied~~~~~~ 401 (509)
T COG0532 322 LKGSLKKLGVDEVKVRIIHAGVGGITESDVMLAAASDAVIIGFNVRVDPEARRLAESEGVKIRYYDVIYKLIEDVEAAMK 401 (509)
T ss_pred HHHHHHhcCCCceEEEEEEeecCCCChhhHHHHHhcCCEEEEEecCCCHHHHHHHHhcCCcEEEcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceeeeeeEeEEEeEEEEcCCCCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccc
Q psy1758 462 NLIPLEKKENLLGLAEIRQVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECER 541 (1527)
Q Consensus 462 ~~l~~~~~e~~~g~a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr 541 (1527)
++|+|+++|.+.|.|+++++|.+++.|.||||+|++|++++|+++|++|||.+||+|+|.||||+|+||+||++|+|||+
T Consensus 402 g~l~p~~~e~~~g~~~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI 481 (509)
T COG0532 402 GMLEPEKKERVIGLAEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGI 481 (509)
T ss_pred hccchhhhhhcccceEEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhh
Q psy1758 542 LSRIENQIQRD 552 (1527)
Q Consensus 542 ~~r~~~~i~~~ 552 (1527)
.++++++++..
T Consensus 482 ~i~~~~di~~g 492 (509)
T COG0532 482 AIENYRDIKEG 492 (509)
T ss_pred EecCcccCCCC
Confidence 99999888863
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-92 Score=886.36 Aligned_cols=548 Identities=41% Similarity=0.628 Sum_probs=491.9
Q ss_pred CCCCHHHHHHHHHhCCCccCccccCCHHHHHHHHHhcCCceeecCCCCchhhhhhh-cccCcccccccCCCEEEEEecCC
Q psy1758 1 MSVKSSVVIKNLMKLGQMVTINQVLDQETAMILVEEMGHVAHASKLNDPESFLLNE-YNKNITAESLVRAPIVTIMGHVD 79 (1527)
Q Consensus 1 ~~~~~~~~i~~l~~~g~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~r~~~V~IvG~~~ 79 (1527)
|++++.+||+.||++|+++++||.||.+.++.+|.+||+........+........ ..+....+...|+|+|+++||+|
T Consensus 175 ~~~~~~~ii~~l~~~g~~~~~n~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~p~V~IvGhvd 254 (742)
T CHL00189 175 LCIPETEIIKSLFLKGISVTVNQIIDISIISQVADDFGINIISEEKNNINEKTSNLDNTSAFTENSINRPPIVTILGHVD 254 (742)
T ss_pred HCcCHHHHHHHHHHcCcCccCCCccCHHHHHHHHHHcCCeEEEeccchhhhhhhcccccccchhhhcccCCEEEEECCCC
Confidence 78999999999999999999999999999999999999987654333222211111 01111334678999999999999
Q ss_pred CChhHHHHHHHccccccccCCceeEEEEEEEEEeC----CeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcH
Q psy1758 80 HGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN----HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMP 155 (1527)
Q Consensus 80 ~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~----~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~ 155 (1527)
||||||+++|+...+..++.+|+|+++..+.+.+. +..++|||||||+.|..++.++++.+|++|||||++++..+
T Consensus 255 vGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~ 334 (742)
T CHL00189 255 HGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKP 334 (742)
T ss_pred CCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCCh
Confidence 99999999999998888888999999888776653 47899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhh
Q psy1758 156 QTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILEL 235 (1527)
Q Consensus 156 qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~ 235 (1527)
|+.+++..+...++|+|+|+||+|+...+..++...+......++.|++.+|++++||++|.|+++|++.|..+++...+
T Consensus 335 QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~e~~~l 414 (742)
T CHL00189 335 QTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLAEIEDL 414 (742)
T ss_pred hhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhhhhhcc
Confidence 99999999999999999999999998766666666665555555667777899999999999999999999887766666
Q ss_pred cCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceeeeEeEeeccCCceeeecCCCcceEecCCCCCCCC
Q psy1758 236 KAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEIQGLTKVPFS 315 (1527)
Q Consensus 236 ~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~ 315 (1527)
+..+..|+.++++++..+++.|++++++|++|+|++||.|++|+.+++|++|++.++.++.+|.||++|.|.||.+.|.+
T Consensus 415 k~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv~g~~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~~~~ 494 (742)
T CHL00189 415 KADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGDIIVIGTSYAKIRGMINSLGNKINLATPSSVVEIWGLSSVPAT 494 (742)
T ss_pred cCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEecCCEEEECCcceEEEEEEcCCCcCccEEcCCCceEecCcccCCCC
Confidence 77777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCcee
Q psy1758 316 GEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVK 395 (1527)
Q Consensus 316 G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~ 395 (1527)
||.|+++.+++.|++++..|+.+.+. .......++++...+.++..+.+++|||||++||+|||.++|.++++++|+
T Consensus 495 Gd~l~v~~~e~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~v~ 571 (742)
T CHL00189 495 GEHFQVFNSEKEAKLKIIKNKENNKK---DTTKRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKKVQ 571 (742)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHHH---hhhcccchHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCcEE
Confidence 99999999999999999877653211 111233455666666677788999999999999999999999999999999
Q ss_pred eeEEeeccCcCChhhHHHHHhcCCEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHHHHHHHHHHhccCCcceeeeeeEe
Q psy1758 396 IQVIHNAVGNINESDINLAIASKAIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGL 475 (1527)
Q Consensus 396 i~iv~~~vG~it~~Dv~~A~~~~a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~l~~~~~e~~~g~ 475 (1527)
++|++++||+||++||.+|++++|+||||||+++++++++|++.||+|++|+|||+|+|+++++|+++|+|+++|+++|+
T Consensus 572 i~i~~~~vG~it~~Dv~lA~~~~a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~lid~~~~~~~~~l~~~~~~~~~g~ 651 (742)
T CHL00189 572 LNILYASLGEVTETDVEFASTTNAEILAFNTNLAPGAKKAARKLNIIIKEYQVIYDLLEYIEALMEDLLDPEYKKVPIGE 651 (742)
T ss_pred EEEEEeecCCCCHHHHHHHHhcCCEEEEeeCCCCHHHHHHHHHcCCEEEEeChHHHHHHHHHHHHhhccCceeeeeecee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeEEEEcCCCCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccccchhhhhhhhh
Q psy1758 476 AEIRQVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLSRIENQIQRD 552 (1527)
Q Consensus 476 a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~r~~~~i~~~ 552 (1527)
|+|+++|++++ |+||||+|++|++++|+++||+|+|++||+|+|.||||+|+||+||++|+|||+.+..|++|+..
T Consensus 652 a~v~~vF~~~k-~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~~~d~~~g 727 (742)
T CHL00189 652 AEVKTVFPLAK-RFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEEFQLWQSG 727 (742)
T ss_pred EEeeEEEecCC-CEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeCCCCCCcC
Confidence 99999999998 89999999999999999999999999999999999999999999999999999999999999874
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-85 Score=747.23 Aligned_cols=486 Identities=28% Similarity=0.448 Sum_probs=434.8
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC-----eEEEEEe
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-----TRINIID 991 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-----~~iniiD 991 (1527)
.+.+++||++||+|.|||||||.++|+..+|.+..... .++++|++++||||||||.+....+.|+. |.+||||
T Consensus 4 ~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem-~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlID 82 (603)
T COG0481 4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREM-RAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLID 82 (603)
T ss_pred cchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHH-HHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcC
Confidence 35678999999999999999999999999999876543 45899999999999999999999999953 8999999
Q ss_pred CCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc
Q psy1758 992 TPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 992 TPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~ 1071 (1527)
||||.||..||.|+|..|.|+||||||+.|+++||......|.+.++-+|.|+||+|++.|+++.+..++.+.+. +.+.
T Consensus 83 TPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iG-id~~ 161 (603)
T COG0481 83 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIG-IDAS 161 (603)
T ss_pred CCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhC-CCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998763 3332
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccC
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSL 1151 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~G 1151 (1527)
+ .+.+||++|. |++++|++|++.+|+|..+++.|+++++|+.|||+|.|.+++.||+.|++++|
T Consensus 162 d------av~~SAKtG~----------gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~g 225 (603)
T COG0481 162 D------AVLVSAKTGI----------GIEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKG 225 (603)
T ss_pred h------heeEecccCC----------CHHHHHHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCC
Confidence 2 6889999998 99999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEE-Eecce---ecccCCeeeCCCCC--CCCCCCccCCCce
Q psy1758 1152 QDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL-ITGIE---EICIGSTICDPSKP--NGLPMLNIDEPTL 1225 (1527)
Q Consensus 1152 d~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIva-i~gl~---~~~iGdTi~~~~~~--~~l~~~~~~~P~l 1225 (1527)
|+|.++.+ | .+..|.++-.| .++..+.+++.|||++- ++|++ ++++||||+...+| +|||+++-..|
T Consensus 226 dki~~m~t--g--~~y~V~evGvf-tP~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~LpGfk~~~P-- 298 (603)
T COG0481 226 DKIRMMST--G--KEYEVDEVGIF-TPKMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLPGFKEVKP-- 298 (603)
T ss_pred CEEEEEec--C--CEEEEEEEeec-cCCccccccccCCceeEEEEeeeecccCcccceEeccCCCccccCCCCCcCCc--
Confidence 99999987 4 34567777655 47889999999999984 45654 68899999966555 78999985444
Q ss_pred eEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCC--CCeEEEEecchhHHHHHHHHHHhc-CcEEEEe
Q psy1758 1226 TINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHD--DSIYEVSGRGELHLTILIENMRRE-GYELSVS 1302 (1527)
Q Consensus 1226 ~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~--~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs 1302 (1527)
|+|.. -.|..+. +++.|+++|.|+..+|.||.+|++.+. |.||+|+++|.|||+|++|||+|| ++++..+
T Consensus 299 -~Vf~G-lyPid~~-----dye~LrdAleKL~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf~ldlI~T 371 (603)
T COG0481 299 -MVFAG-LYPVDSD-----DYEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITT 371 (603)
T ss_pred -eEEEe-ecccChh-----HHHHHHHHHHhcccccceeeeccccchhccCceeehhhhHHHHHHHHHHHHHhhCcceEec
Confidence 55542 2343333 479999999999999999999998554 999999999999999999999987 9999999
Q ss_pred cCeeeEEE--ecc------------------eEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEe
Q psy1758 1303 RPRVIFKT--LNG------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRI 1362 (1527)
Q Consensus 1303 ~P~V~yre--~~g------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~v 1362 (1527)
.|+|+|+- ++| .+.|||.+++|.+|+||+|.||++|+.+||.+.+|++.+..|+.|.|++
T Consensus 372 aPsV~Y~v~~~~g~~~~i~NPs~~P~~~~I~~i~EP~v~~~ii~P~eylG~vm~Lcq~kRG~~~~m~yl~~~rv~l~Y~l 451 (603)
T COG0481 372 APSVVYKVELTDGEEIEVDNPSDLPDPNKIEEIEEPYVKATIITPQEYLGNVMELCQEKRGIQIDMEYLDQNRVMLTYEL 451 (603)
T ss_pred CCceEEEEEEcCCcEEEecChHhCCChhhhheeeCceeEEEEeCcHHHHHHHHHHHHHhcCceecceEecCceEEEEEec
Confidence 99999997 344 6899999999999999999999999999999999999987899999999
Q ss_pred chhhhc-ChHHHHccccceeEEEEeEecceeeccccccccccccccceeecCCCchhHHHHHHH--HhhcCcccccCccc
Q psy1758 1363 PSRGLI-GFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLWK--LQDRGRLFINHNDL 1439 (1527)
Q Consensus 1363 P~~~l~-g~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~~~~~g~li~~~~g~~~~~~l~~--~~~rG~~fv~~~~~ 1439 (1527)
|++|++ +|++.|+|.|+|||+|+|+|.+|++.+ +. +..+|+|.+..+|+|+.+|+ ++.||+.+|..-.+
T Consensus 452 Pl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~~~------lV--K~dIlvNge~VDALs~ivHrd~A~~rgr~~~~KlKe 523 (603)
T COG0481 452 PLAEIVFDFFDKLKSISKGYASFDYEFIGYRESD------LV--KVDILVNGEKVDALSFIVHRDNAYERGRELVEKLKE 523 (603)
T ss_pred chHHHHHHHhHhhhccccceeeeccccccccccc------eE--EEEEEecCccccceeeeechhHHHHHHHHHHHHHHh
Confidence 999955 899999999999999999999999965 55 77999999999999999994 99999999987766
Q ss_pred ccc
Q psy1758 1440 VYE 1442 (1527)
Q Consensus 1440 vy~ 1442 (1527)
+-.
T Consensus 524 lIP 526 (603)
T COG0481 524 LIP 526 (603)
T ss_pred hcc
Confidence 543
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-80 Score=779.64 Aligned_cols=482 Identities=27% Similarity=0.432 Sum_probs=432.5
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec-----CeEEEEEeCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-----GTRINIIDTP 993 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-----~~~iniiDTP 993 (1527)
.+++|||+|+||+|||||||+++|++.+|.+.+.+. ..+++|+.++|++||+|+.++...+.|+ ++.+||||||
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~-~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTP 82 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREM-KAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTP 82 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCccccc-ccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECC
Confidence 467999999999999999999999999998876543 5689999999999999999999999886 6899999999
Q ss_pred CCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 994 GHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 994 Gh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
||.||..++.++++.+|++|||||+++|++.||..+|..+...++|.|+|+||+|+++++++.+.+++.+.+. ..
T Consensus 83 Gh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg---~~-- 157 (600)
T PRK05433 83 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIG---ID-- 157 (600)
T ss_pred CcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhC---CC--
Confidence 9999999999999999999999999999999999999999889999999999999988777666666655431 11
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCE
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQD 1153 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~ 1153 (1527)
..+++++||++|+ |+++|+++|.+.+|+|..+.++||+++||++++|+|.|++++|||++|+|++||.
T Consensus 158 --~~~vi~iSAktG~----------GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~ 225 (600)
T PRK05433 158 --ASDAVLVSAKTGI----------GIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDK 225 (600)
T ss_pred --cceEEEEecCCCC----------CHHHHHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCE
Confidence 1248999999998 9999999999999999988999999999999999999999999999999999999
Q ss_pred EEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe-c---ceecccCCeeeCCCCC--CCCCCCccCCCceeE
Q psy1758 1154 VVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT-G---IEEICIGSTICDPSKP--NGLPMLNIDEPTLTI 1227 (1527)
Q Consensus 1154 v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~-g---l~~~~iGdTi~~~~~~--~~l~~~~~~~P~l~~ 1227 (1527)
|.++++ + ...+|.+|+.+. +++.++++|.||||+++. | ++++++||||++.+++ .++|+++.++|++++
T Consensus 226 i~~~~~--~--~~~~V~~i~~~~-~~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~v~~ 300 (600)
T PRK05433 226 IKMMST--G--KEYEVDEVGVFT-PKMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPAEEPLPGFKEVKPMVFA 300 (600)
T ss_pred EEEecC--C--ceEEEEEeeccC-CCceECcEEcCCCEEEEecccccccccCCCCEEECCCCccccCCCCCCCCCcEEEE
Confidence 999877 3 357899998654 589999999999998774 4 4678899999998877 589999999999999
Q ss_pred EEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCC--CCCeEEEEecchhHHHHHHHHHHhc-CcEEEEecC
Q psy1758 1228 NFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKH--DDSIYEVSGRGELHLTILIENMRRE-GYELSVSRP 1304 (1527)
Q Consensus 1228 ~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~--~~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs~P 1304 (1527)
.+.|.+. . +.++|+++|.|+.+|||||+++.+.+ .+.||+|+|||+|||+|++|||+|| |+|+.+++|
T Consensus 301 ~i~p~~~----~-----d~~kL~~aL~kL~~eD~sl~~~~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~~~~v~~~~P 371 (600)
T PRK05433 301 GLYPVDS----D-----DYEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAP 371 (600)
T ss_pred EEEECCc----c-----CHHHHHHHHHHHHHhCCeEEEEecCCcceecceEeecHHHHHHHHHHHHHHHhhCceEEEecC
Confidence 9987653 1 35899999999999999999985422 2568999999999999999999987 999999999
Q ss_pred eeeEEEe--cc------------------eEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEech
Q psy1758 1305 RVIFKTL--NG------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPS 1364 (1527)
Q Consensus 1305 ~V~yre~--~g------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~ 1364 (1527)
+|+|||+ +| .+||||++++|.+|++|+|+||++|++|||++++|++.+ +++.|+|++|+
T Consensus 372 ~V~Yreti~~g~~~~~~~p~~~pds~~~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~-~~~~i~~~~Pl 450 (600)
T PRK05433 372 SVVYEVTLTDGEVIEVDNPSKLPDPGKIEEIEEPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLG-NRVELTYELPL 450 (600)
T ss_pred EEEEEEEEeCCcEEEEECcccCCCccccceEECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEecC-CeEEEEEEech
Confidence 9999995 55 899999999999999999999999999999999999975 68999999999
Q ss_pred hhh-cChHHHHccccceeEEEEeEecceeeccccccccccccccceeecCCCchhHHHHHHH--HhhcCcccccCccccc
Q psy1758 1365 RGL-IGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLWK--LQDRGRLFINHNDLVY 1441 (1527)
Q Consensus 1365 ~~l-~g~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~~~~~g~li~~~~g~~~~~~l~~--~~~rG~~fv~~~~~vy 1441 (1527)
+|| ++|+++|+|+|+|+|+|+|+|+||+|.+ +. +-.+||+.+..+|+++.+|. ++.+|+.+|..-.++-
T Consensus 451 ~e~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~~------~~--~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~i 522 (600)
T PRK05433 451 AEIVFDFFDRLKSVSRGYASLDYEFIGYRESD------LV--KLDILINGEPVDALSFIVHRDKAYERGRALVEKLKELI 522 (600)
T ss_pred HHhhhhHHHHhHhhcCCEEEEEEEECCccccc------EE--EEEEEECCcccceeEEeeeHHHHHHHHHHHHHHHHhhC
Confidence 999 8999999999999999999999999976 55 77999999999999999994 8899999888765543
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-80 Score=776.00 Aligned_cols=481 Identities=28% Similarity=0.441 Sum_probs=429.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--C---eEEEEEeCCCC
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--G---TRINIIDTPGH 995 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~---~~iniiDTPGh 995 (1527)
++|||+|+||+|||||||+++|++.+|.+.+.. ...+++|+.++|++||+|+.++...+.|. + +.++|||||||
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~-~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~ 80 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISERE-MREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 80 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCcccc-ccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCc
Confidence 589999999999999999999999998887643 34688999999999999999999999885 3 78999999999
Q ss_pred CCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 996 ADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 996 ~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.+|..++.++++.||++|||+|+++|++.||..+|..+...++|.++|+||+|+++++.+++.+++.+.+. ..
T Consensus 81 ~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg---~~---- 153 (595)
T TIGR01393 81 VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIG---LD---- 153 (595)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhC---CC----
Confidence 99999999999999999999999999999999999988889999999999999987776666666655432 11
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEE
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVV 1155 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~ 1155 (1527)
..+++++||++|. |+++|+++|.+.+|+|..++++||+++||++++|+|.|++++|||++|+|++||.|.
T Consensus 154 ~~~vi~vSAktG~----------GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~ 223 (595)
T TIGR01393 154 ASEAILASAKTGI----------GIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIR 223 (595)
T ss_pred cceEEEeeccCCC----------CHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEE
Confidence 0148999999998 999999999999999998999999999999999999999999999999999999999
Q ss_pred EecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe-c---ceecccCCeeeCCCCC--CCCCCCccCCCceeEEE
Q psy1758 1156 IMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT-G---IEEICIGSTICDPSKP--NGLPMLNIDEPTLTINF 1229 (1527)
Q Consensus 1156 ~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~-g---l~~~~iGdTi~~~~~~--~~l~~~~~~~P~l~~~~ 1229 (1527)
++++ | ...+|.+|+.+.+ +..++++|.||||+++. | ++++.+|||||+.+++ .++|+++.++|++.+.+
T Consensus 224 ~~~~--~--~~~~v~~i~~~~~-~~~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~v~~~i 298 (595)
T TIGR01393 224 FMST--G--KEYEVDEVGVFTP-KLTKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPAKEPLPGFKEVKPMVFAGL 298 (595)
T ss_pred EecC--C--CeeEEeEEEEecC-CceECCEEcCCCEEEEeccccccCccCCCCEEECCCCccccCCCCCcCCCcEEEEEE
Confidence 9877 3 3578999996654 45899999999998764 4 4678899999998876 48999999999999999
Q ss_pred EecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCC--CCCeEEEEecchhHHHHHHHHHHhc-CcEEEEecCee
Q psy1758 1230 MVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKH--DDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRV 1306 (1527)
Q Consensus 1230 ~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~--~~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs~P~V 1306 (1527)
.|.+. . ++++|.++|.||.++||||+++++.+ .+.||+|+|||+|||+|++|||+|| |+|+.+++|+|
T Consensus 299 ~p~~~----~-----d~~kL~~aL~kL~~eD~sl~~~~e~~~~l~~g~r~g~lG~lHlei~~erL~re~~~~v~~~~P~V 369 (595)
T TIGR01393 299 YPIDT----E-----DYEDLRDALEKLKLNDASLTYEPESSPALGFGFRCGFLGLLHMEIIQERLEREFNLDLITTAPSV 369 (595)
T ss_pred EECCc----c-----cHHHHHHHHHHHhccCCeEEEEecCCcccccccEEeeeeHHHHHHHHHHHHHHhCCeeEEecCEE
Confidence 87653 1 46899999999999999999987432 2568999999999999999999987 99999999999
Q ss_pred eEEEe--cce------------------EeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhh
Q psy1758 1307 IFKTL--NGE------------------LYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRG 1366 (1527)
Q Consensus 1307 ~yre~--~g~------------------llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~ 1366 (1527)
+|||+ +|+ +||||++++|.+|++|+|+||++|++|||++++|++.+++++.|+|++|++|
T Consensus 370 ~Yreti~~g~~~~~~~p~~~p~~~~~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~~~~~i~~~~Plae 449 (595)
T TIGR01393 370 IYRVYLTNGEVIEVDNPSDLPDPGKIEHVEEPYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDPNRVELIYEMPLAE 449 (595)
T ss_pred EEEEEecCCcEEEEECcccCCCcccccceeCCeEEEEEEccHHHHHHHHHHHHHcCCEEeCcEEcCCCeEEEEEEeccch
Confidence 99995 554 9999999999999999999999999999999999997656899999999999
Q ss_pred h-cChHHHHccccceeEEEEeEecceeeccccccccccccccceeecCCCchhHHHHHH--HHhhcCcccccCccccc
Q psy1758 1367 L-IGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLW--KLQDRGRLFINHNDLVY 1441 (1527)
Q Consensus 1367 l-~g~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~~~~~g~li~~~~g~~~~~~l~--~~~~rG~~fv~~~~~vy 1441 (1527)
+ ++|+++|+|+|+|+|+|+|+|+||+|.+ +. +..+|||.+..+|+|+.+| +++.+|+.+|..-.++-
T Consensus 450 ~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~~------~~--~~~~~~n~~~~d~l~~~~~~~~~~~~~~~~~~~l~~~i 519 (595)
T TIGR01393 450 IVYDFFDKLKSISRGYASFDYELIGYRPSD------LV--KLDILINGEPVDALSFIVHRDKAYSRGREICEKLKELI 519 (595)
T ss_pred hhhchhHHhhhhcCCEEEEEEEECCccccc------eE--EEEEEECCcccceeEEeeeHHHHHHHHHHHHHHHHhhC
Confidence 6 8999999999999999999999999966 55 7799999999999999999 48899999988766543
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-79 Score=762.78 Aligned_cols=453 Identities=31% Similarity=0.507 Sum_probs=411.0
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccc--eecchhhhhcccceeEeeeeEEEEecC-eEEEEEeCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA--RIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGH 995 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~--~~~D~~~~E~erGiTi~~~~~~~~~~~-~~iniiDTPGh 995 (1527)
.+++|||+|+||+|||||||+++||+.+|.+.+.+.+.+ ++||+++.|++|||||.++..++.|++ ++|||||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 578999999999999999999999999999999877764 699999999999999999999999996 99999999999
Q ss_pred CCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh-------
Q psy1758 996 ADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL------- 1068 (1527)
Q Consensus 996 ~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l------- 1068 (1527)
.||..|++|+|+.+|+||+||||.+|+++||+.+|++|.++++|+++|+||||+..+++..+.+++++.|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~~p 166 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPVQLP 166 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceeeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998877431
Q ss_pred -ccccccc------------------------------------------------------------------------
Q psy1758 1069 -CATEEQL------------------------------------------------------------------------ 1075 (1527)
Q Consensus 1069 -~~~~~~~------------------------------------------------------------------------ 1075 (1527)
+..+.-.
T Consensus 167 Ig~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~~ 246 (697)
T COG0480 167 IGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRKG 246 (697)
T ss_pred ccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHHh
Confidence 0000000
Q ss_pred -----CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC--------------------CCCCCceeEEEeee
Q psy1758 1076 -----DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD--------------------NSNNPLQLQIISLE 1130 (1527)
Q Consensus 1076 -----~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~--------------------~~~~p~~~~V~~~~ 1130 (1527)
-+|+++.||..+ .|+++||+++++++|+|.. +.++||.+++||+.
T Consensus 247 ~~~~~~~pvl~gsa~kn----------~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~ 316 (697)
T COG0480 247 TIAGKIVPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIM 316 (697)
T ss_pred hhccceeeEEeeecccC----------CcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeE
Confidence 023333333333 4899999999999999931 34799999999999
Q ss_pred ccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCC
Q psy1758 1131 YSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPS 1210 (1527)
Q Consensus 1131 ~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~ 1210 (1527)
+|++.|+++|+|||||+|++||.|++... ..++||.+|+.++|.++.+++++.||||+++.|++++.+|||+|+..
T Consensus 317 ~d~~~g~l~~~RvysGtl~~G~~v~n~~~----~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~~tGdTl~~~~ 392 (697)
T COG0480 317 TDPFVGKLTFVRVYSGTLKSGSEVLNSTK----GKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDATTGDTLCDEN 392 (697)
T ss_pred ecCCCCeEEEEEEeccEEcCCCEEEeCCC----CccEEEEEEEEccCCceeecccccCccEEEEEcccccccCCeeecCC
Confidence 99999999999999999999999988654 35689999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHH
Q psy1758 1211 KPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIE 1290 (1527)
Q Consensus 1211 ~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e 1290 (1527)
.+..++.+.+++|++++++.|.+. . +.+||.++|.+++++||+++++.++++++ .+++|||||||+|+++
T Consensus 393 ~~v~~~~~~~pePVi~vavepk~~----~-----d~~Kl~~aL~~l~~eDPt~~v~~d~Etge-~iIsGmGELHLei~~d 462 (697)
T COG0480 393 KPVILESMEFPEPVISVAVEPKTK----A-----DQEKLSEALNKLAEEDPTFRVETDEETGE-TIISGMGELHLEIIVD 462 (697)
T ss_pred CccccccccCCCceEEEEEeECCh----h-----hHHHHHHHHHHHHhhCCceEEEEcCCccc-EEEEecchhhHHHHHH
Confidence 667889999999999999998653 1 35899999999999999999999999999 9999999999999999
Q ss_pred HHHhc-CcEEEEecCeeeEEEe--------------------------------c-------------------------
Q psy1758 1291 NMRRE-GYELSVSRPRVIFKTL--------------------------------N------------------------- 1312 (1527)
Q Consensus 1291 ~lrre-g~ev~vs~P~V~yre~--------------------------------~------------------------- 1312 (1527)
+|+|+ |+|+.+++|+|+|||+ +
T Consensus 463 rl~~~~~Vev~~~~PqV~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~~~~f~~~i~~g~~P~~yi~~ve~ 542 (697)
T COG0480 463 RLKREFGVEVEVGKPQVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGSGFEFVDKIVGGVVPKEYIPAVEK 542 (697)
T ss_pred HHHhhcCceEEecCCeeEEEEeecccccceeeeeeccCCCCcccEEEEEEEeCCCCcceEEEeecccCcCchhhhHHHHH
Confidence 99976 9999999999999996 0
Q ss_pred --------c----------------------------------------------eEeeeeEEEEEEecCcchHHHHHHH
Q psy1758 1313 --------G----------------------------------------------ELYEPYENLFVDIEEINQGIIMQKL 1338 (1527)
Q Consensus 1313 --------g----------------------------------------------~llEP~~~~~i~vp~e~~G~v~~~l 1338 (1527)
| ++|||+++|+|.+|+||+|+||++|
T Consensus 543 G~~~a~~~GpLag~pv~dvkv~L~dgs~h~vdss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l 622 (697)
T COG0480 543 GFREALKSGPLAGYPVVDVKVTLLDGSYHEVDSSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDL 622 (697)
T ss_pred HHHHHHhcCCCCCCceEeeEEEEEcCccccCCCCHHHHHHHHHHHHHHHHhhCCceEecceEEEEEEcchhhhchhHHhh
Confidence 0 5999999999999999999999999
Q ss_pred hccCCeEeeeeec-CCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1339 NYRGGDLKNIEIN-EKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1339 ~~rrG~~~~~~~~-~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
++|||++++|+.. ++++..+++.+|++|++||.++|||.|+|+|.|+++|+||++++
T Consensus 623 ~~rRG~I~~~~~~~~~~~~~i~A~vPl~Emfgya~dLRs~T~Gra~~~m~f~~y~~vp 680 (697)
T COG0480 623 NSRRGQILGMEQRPGGGLDVIKAEVPLAEMFGYATDLRSATQGRASFSMEFDHYEEVP 680 (697)
T ss_pred hhcceEEeceeeccCCceEEEEEEechHHhccchhhhHhhcCCceeEEEEecccEeCC
Confidence 9999999999997 45789999999999999999999999999999999999999998
|
|
| >KOG0465|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-78 Score=703.57 Aligned_cols=453 Identities=29% Similarity=0.483 Sum_probs=411.8
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccc--eecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCC
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA--RIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPG 994 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~--~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPG 994 (1527)
.+.+++|||+|++|.|+|||||.+++|+.+|.+...+.+.. ..||+++.||+|||||.+..+.+.|+++.||||||||
T Consensus 34 ~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPG 113 (721)
T KOG0465|consen 34 IPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPG 113 (721)
T ss_pred CchhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCC
Confidence 34568999999999999999999999999998887766654 7999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhh-------
Q psy1758 995 HADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDK------- 1067 (1527)
Q Consensus 995 h~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~------- 1067 (1527)
|.||.-||+|+|+..|++|+|+||..|+++||..+|+++.++++|.|.|+||||+.++++..+++++...+..
T Consensus 114 HvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqi 193 (721)
T KOG0465|consen 114 HVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQI 193 (721)
T ss_pred ceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876521
Q ss_pred -----------------------------------------------------hccccccc-------------------
Q psy1758 1068 -----------------------------------------------------LCATEEQL------------------- 1075 (1527)
Q Consensus 1068 -----------------------------------------------------l~~~~~~~------------------- 1075 (1527)
+...++++
T Consensus 194 Pig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aI 273 (721)
T KOG0465|consen 194 PIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAI 273 (721)
T ss_pred cccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHH
Confidence 00000000
Q ss_pred --------CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC--------------------CCC-CCceeEE
Q psy1758 1076 --------DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD--------------------NSN-NPLQLQI 1126 (1527)
Q Consensus 1076 --------~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~--------------------~~~-~p~~~~V 1126 (1527)
-.||+++||+.+. |+++|||++++++|+|.. ..+ .||.++.
T Consensus 274 Rr~Ti~r~fvPVl~GSAlKNk----------GVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LA 343 (721)
T KOG0465|consen 274 RRATIKRSFVPVLCGSALKNK----------GVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALA 343 (721)
T ss_pred HHHHhhcceeeEEechhhccc----------CcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeE
Confidence 1588999999887 999999999999999941 122 3999999
Q ss_pred EeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCee
Q psy1758 1127 ISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTI 1206 (1527)
Q Consensus 1127 ~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi 1206 (1527)
||+..++| |.+.|.|||+|+|++||.|++.++ | ++.|+.+|..++....++++++.|||||++.|+ ++..|||+
T Consensus 344 FKle~g~f-GqLTyvRvYqG~L~kG~~iyN~rt--g--KKvrv~RL~rmHa~~medV~~v~AG~I~alfGi-dcasGDTf 417 (721)
T KOG0465|consen 344 FKLEEGRF-GQLTYVRVYQGTLSKGDTIYNVRT--G--KKVRVGRLVRMHANDMEDVNEVLAGDICALFGI-DCASGDTF 417 (721)
T ss_pred EEeeecCc-cceEEEEEeeeeecCCcEEEecCC--C--ceeEhHHHhHhcccccchhhhhhccceeeeecc-ccccCcee
Confidence 99999999 999999999999999999999877 3 568999999999999999999999999999999 89999999
Q ss_pred eCC-CCCCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHH
Q psy1758 1207 CDP-SKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHL 1285 (1527)
Q Consensus 1207 ~~~-~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL 1285 (1527)
++. .....+..+.+|+|++++++.|++. + +.+++.++|.|...|||+++|..+.+.+| .+++|||||||
T Consensus 418 td~~~~~~~m~si~vPePVis~aikP~~k----~-----d~~~fskaL~rf~~EDPtFrv~~d~E~kq-TvIsGMGELHL 487 (721)
T KOG0465|consen 418 TDKQNLALSMESIHIPEPVISVAIKPVNK----K-----DADNFSKALNRFTKEDPTFRVSLDPEMKQ-TVISGMGELHL 487 (721)
T ss_pred ccCccccceeeeeecCCCeeEEEeccccc----c-----cHHHHHHHHHhhcccCCceEEEecccccc-chhhccchhhH
Confidence 998 5667788999999999999998663 2 34688999999999999999999999999 99999999999
Q ss_pred HHHHHHHHhc-CcEEEEecCeeeEEEe-----------------------------------------------------
Q psy1758 1286 TILIENMRRE-GYELSVSRPRVIFKTL----------------------------------------------------- 1311 (1527)
Q Consensus 1286 ~vl~e~lrre-g~ev~vs~P~V~yre~----------------------------------------------------- 1311 (1527)
+|..|||+|| |+++.+++|+|.|||+
T Consensus 488 EIy~eRl~rEy~~~~~~Gkp~VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~~~~g~~~P~~ 567 (721)
T KOG0465|consen 488 EIYVERLVREYKVDAELGKPQVAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSDEIVGGNVPKQ 567 (721)
T ss_pred HHHHHHHHHHhCCccccCCceeeehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCCceEEEEecccCCCCchh
Confidence 9999999998 9999999999999995
Q ss_pred -------------------------------cc-----------------------------eEeeeeEEEEEEecCcch
Q psy1758 1312 -------------------------------NG-----------------------------ELYEPYENLFVDIEEINQ 1331 (1527)
Q Consensus 1312 -------------------------------~g-----------------------------~llEP~~~~~i~vp~e~~ 1331 (1527)
|| .+|||||.|+|.+|+||+
T Consensus 568 f~pa~ekg~~e~~~~G~L~ghpl~~~r~~l~Dga~h~vds~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~Efq 647 (721)
T KOG0465|consen 568 FIPAVEKGFEEIVAKGPLIGHPLSNLRIVLQDGAHHPVDSSELAFMKATRNAFREAFKRAPPRILEPIMNVEVTTPEEFQ 647 (721)
T ss_pred HHHHHHHHHHHHHhcCCccCCcccceEEEEecCCcCcccccHHHHHHHHHHHHHHHHHhCCcceeecceeeEEecchhhh
Confidence 00 589999999999999999
Q ss_pred HHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeeccc
Q psy1758 1332 GIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYN 1396 (1527)
Q Consensus 1332 G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~~ 1396 (1527)
|.|+.+|++|+|.|.+.+.. +++-.|.+++|+++|+||.++|+|+|+|.|.|+|+|++|+|+.+
T Consensus 648 G~Vi~~L~kR~a~I~~~d~~-~~~~ti~A~VPL~~mfgYss~LRslTqGkgeftMEys~y~p~~~ 711 (721)
T KOG0465|consen 648 GTVIGDLNKRKAQITGIDSS-EDYKTIKAEVPLNEMFGYSSELRSLTQGKGEFTMEYSRYSPVPP 711 (721)
T ss_pred hhhhhhhhhcccEEecccCC-CceEEEEecccHHHHhhhhhhhhhhhcCcceEEEeecccCCCch
Confidence 99999999999999999874 58999999999999999999999999999999999999999983
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-73 Score=734.80 Aligned_cols=453 Identities=29% Similarity=0.447 Sum_probs=408.7
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCccccccccc--ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCC
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH 995 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh 995 (1527)
+.+++|||+|+||+|||||||+++|++.+|.+.+.+.+. .+++|+.+.|++||+|+++....+.|+++++||+|||||
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~ 85 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGH 85 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCc
Confidence 467899999999999999999999999999877655554 489999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcc-----
Q psy1758 996 ADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA----- 1070 (1527)
Q Consensus 996 ~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~----- 1070 (1527)
.||..++.++++.+|++|+||||.+|+++||+.+|..+.+.++|+|+|+||+|+.++++.++++++++.+.....
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ip 165 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLP 165 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEec
Confidence 999999999999999999999999999999999999999999999999999999988888888888765533100
Q ss_pred -----------------------c---------------------------------c----------------------
Q psy1758 1071 -----------------------T---------------------------------E---------------------- 1072 (1527)
Q Consensus 1071 -----------------------~---------------------------------~---------------------- 1072 (1527)
. +
T Consensus 166 isa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~~l 245 (693)
T PRK00007 166 IGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKAAL 245 (693)
T ss_pred CccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHHHH
Confidence 0 0
Q ss_pred -----cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC--------------------CCCCCceeEEE
Q psy1758 1073 -----EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD--------------------NSNNPLQLQII 1127 (1527)
Q Consensus 1073 -----~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~--------------------~~~~p~~~~V~ 1127 (1527)
...-+|++++||+++. |+++||++|++++|+|.. ++++||+++||
T Consensus 246 ~~~~~~~~~~Pv~~gSa~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Vf 315 (693)
T PRK00007 246 RKATIANEIVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAF 315 (693)
T ss_pred HHHHhcCcEEEEEecccccCc----------CHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEE
Confidence 0012678888888887 999999999999999852 34679999999
Q ss_pred eeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeee
Q psy1758 1128 SLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTIC 1207 (1527)
Q Consensus 1128 ~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~ 1207 (1527)
|+.+|++.|+++|+||+||+|++||.|++..+ ...++|.+|+.+.|.++.++++|.|||||+++|++++.+||||+
T Consensus 316 K~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~----~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdtL~ 391 (693)
T PRK00007 316 KIMTDPFVGKLTFFRVYSGVLESGSYVLNSTK----GKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDTTTGDTLC 391 (693)
T ss_pred EeeecCCCCcEEEEEEeeeEEcCCCEEEeCCC----CceeEeceeEEeccCCcccccccCCCcEEEEeCCccCCcCCEee
Confidence 99999999999999999999999999987644 23578999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHH
Q psy1758 1208 DPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTI 1287 (1527)
Q Consensus 1208 ~~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~v 1287 (1527)
+.+.+..++++++++|++++++.|.+. . +..+|.++|.++.++||+|+|..++++++ +.++|+|||||+|
T Consensus 392 ~~~~~~~l~~~~~~~Pv~~~aIep~~~---~------d~~kL~~aL~~L~~eDpsl~v~~~~etge-~~l~g~GelHLei 461 (693)
T PRK00007 392 DEKNPIILESMEFPEPVISVAVEPKTK---A------DQEKMGIALQKLAEEDPSFRVSTDEETGQ-TIIAGMGELHLDI 461 (693)
T ss_pred CCCCccccCCCCCCCceEEEEEEECCc---c------cHHHHHHHHHHHHHhCCeEEEEEcCCCCC-EEEEEecHHhHHH
Confidence 887777788888899999999998764 1 24799999999999999999999999999 9999999999999
Q ss_pred HHHHHHhc-CcEEEEecCeeeEEEe-------c-----------------------------------------------
Q psy1758 1288 LIENMRRE-GYELSVSRPRVIFKTL-------N----------------------------------------------- 1312 (1527)
Q Consensus 1288 l~e~lrre-g~ev~vs~P~V~yre~-------~----------------------------------------------- 1312 (1527)
++++|+++ |+|+.+++|+|+|||+ .
T Consensus 462 ~~~rL~~~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~~~~~~f~~~i~~g~~~~~~~~a 541 (693)
T PRK00007 462 IVDRMKREFKVEANVGKPQVAYRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEPGKGYEFVNKIVGGVIPKEYIPA 541 (693)
T ss_pred HHHHHHHHhCCeeEecCCEEEEeecccCccccCcccccccCCCCceEEEEEEEEeCCCCCCcEEeecccCCcCcHHHHHH
Confidence 99999875 9999999999999994 0
Q ss_pred -----------c----------------------------------------------eEeeeeEEEEEEecCcchHHHH
Q psy1758 1313 -----------G----------------------------------------------ELYEPYENLFVDIEEINQGIIM 1335 (1527)
Q Consensus 1313 -----------g----------------------------------------------~llEP~~~~~i~vp~e~~G~v~ 1335 (1527)
| .+||||++++|.+|++|+|+||
T Consensus 542 v~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~~~~ds~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~ 621 (693)
T PRK00007 542 VDKGIQEAMESGVLAGYPVVDVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEEYMGDVI 621 (693)
T ss_pred HHHHHHHHHhcCCcCCCceeeEEEEEEecccCCCCCcHHHHHHHHHHHHHHHHHHCCCEEecCcEEEEEEechhhhhhHH
Confidence 0 5899999999999999999999
Q ss_pred HHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1336 QKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1336 ~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
++|++|||++.+|++. ++++.|++.+|++|++||.++|+++|+|+|+|++.|+||++++
T Consensus 622 ~~L~~RRg~i~~~~~~-~~~~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~ 680 (693)
T PRK00007 622 GDLNSRRGQIEGMEDR-GGAKVIRAEVPLSEMFGYATDLRSMTQGRATYSMEFDHYEEVP 680 (693)
T ss_pred HHHHhCCCeEeccccc-CCcEEEEEEcCHHHhhccHHHHHhhcCCceEEEEEeceeeECC
Confidence 9999999999999875 4578999999999999999999999999999999999999997
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-71 Score=695.49 Aligned_cols=451 Identities=33% Similarity=0.511 Sum_probs=383.9
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC------e------------EEEEEeCCChh
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH------G------------SITFLDTPGHE 127 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~------~------------~i~~iDTPG~e 127 (1527)
..|+|.|+++||+|||||||+++|++..+...+.+++|++++...+.+.. . .++|||||||+
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 46899999999999999999999998887778888999998876554321 0 27899999999
Q ss_pred hHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCc-chh--------------HH-----
Q psy1758 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLD-INL--------------DR----- 187 (1527)
Q Consensus 128 ~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~-~~~--------------~~----- 187 (1527)
+|..++.++++.+|++++|+|++++..+++.+++..+...++|+++|+||+|+.. +.. ..
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f 162 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQEL 162 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999889999999999999852 110 00
Q ss_pred ------HHHHHhhhccccc------ccCCCCcEEEeeccCCCChhHHHHHHHHHHH--H-HhhcCCCCCCCceEEEEEee
Q psy1758 188 ------IKQDLISEQVIPE------EYGGASPFISISAKTGVGINKLLENISLQAE--I-LELKAPVTTPAKGVIIESRL 252 (1527)
Q Consensus 188 ------~~~~l~~~~~~~~------~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~--~-~~~~~~~~~p~~~~v~~~~~ 252 (1527)
....+...+...+ ++++.++++++||++|+|+++|++.+....+ + .++..+.+.|+++.|++++.
T Consensus 163 ~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~~ 242 (586)
T PRK04004 163 EEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGPGKGTVLEVKE 242 (586)
T ss_pred HHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEEEE
Confidence 1112232333322 4567789999999999999999999875432 2 24556677899999999999
Q ss_pred cCCCceEEEEEeeccEEEeccEEEecceee----eEeEeecc-----------CCceeeecCCCcceEec--CCCCCCCC
Q psy1758 253 DKGKGPVATVLIQSGTLRCSDIVVAGASYG----RIRSMLNE-----------NGKNILEAGPSIPVEIQ--GLTKVPFS 315 (1527)
Q Consensus 253 ~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~----kVr~i~~~-----------~g~~v~~a~~~~~v~I~--gl~~~~~~ 315 (1527)
+++.|++++++|.+|+|++||.|++++.++ +||+|... .++.++++.|+.++.|. ||..+ .+
T Consensus 243 ~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~-~~ 321 (586)
T PRK04004 243 ERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDA-LA 321 (586)
T ss_pred eCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCcccc-CC
Confidence 999999999999999999999999988865 99999886 45788999999999886 99988 99
Q ss_pred CCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCcee
Q psy1758 316 GEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVK 395 (1527)
Q Consensus 316 G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~ 395 (1527)
|+.|+++.++ +++++...++ ++ ++++. -..+.+++|||||++||+|||.++|.++ +
T Consensus 322 g~~~~v~~~~-~~~~~~~~~~---~~----------~~~~~-----~~~~~~~vivkad~~Gs~EAi~~~l~~~-----~ 377 (586)
T PRK04004 322 GSPLRVVRDE-DVEEVKEEVE---EE----------IEEIR-----IETDEEGVVVKADTLGSLEALVNELREE-----G 377 (586)
T ss_pred CCeEEEeCcH-HHHHHHHHHH---HH----------HHhcc-----ccccccCEEEEeCCccHHHHHHHHHHhC-----C
Confidence 9999999884 3433322111 00 11111 1246789999999999999999999986 7
Q ss_pred eeEEeeccCcCChhhHHHHHhc------CCEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHHHHHHHHHHhccCCccee
Q psy1758 396 IQVIHNAVGNINESDINLAIAS------KAIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKK 469 (1527)
Q Consensus 396 i~iv~~~vG~it~~Dv~~A~~~------~a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~l~~~~~ 469 (1527)
++|++++||+||++||.+|+++ +|+||||||+++++++++|+++||+|++|+|||||+|+++++|+++++|.++
T Consensus 378 i~i~~~~vG~it~~Dv~lA~~~~~~~~~~a~Il~FnV~~~~~a~~~A~~~~V~I~~~~iIY~lid~~~~~~~~~~~~~~~ 457 (586)
T PRK04004 378 IPIRKADVGDISKRDVIEASTVAEKDPLYGVILAFNVKVLPDAEEEAEKSDVKIFTGDVIYQLIEDYEKWVKEQKEAEKE 457 (586)
T ss_pred CCEEEeccCCCCHHHHHHHHhhhccCCCceEEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhhhcchhh
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999999988755
Q ss_pred ---eeeeEeEEEe----EEEEcCCCCeEEEEEEeeeEEeeCCeEEEee-CCeEEEEEEeceecccccccceeecCccccc
Q psy1758 470 ---ENLLGLAEIR----QVILVNKVSKIAGCYILEGLIRRDSKIRILR-NKNIIWTGELDSLKRFKDNVKEVKAGFECER 541 (1527)
Q Consensus 470 ---e~~~g~a~v~----~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R-~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr 541 (1527)
++++|+|+|+ ++|+.++ +.||||+|++|++++|++ |+| +|+. .|+|.||||+|+||+||++|+|||+
T Consensus 458 ~~~~~~~g~a~v~il~~~vf~~~~-~~IaGc~V~~G~i~~~~~--v~r~~g~~--iG~i~Slk~~k~~V~ev~~G~Ecgi 532 (586)
T PRK04004 458 KILEKIVRPAKIRILPGYVFRQSD-PAIVGVEVLGGTIKPGVP--LIKEDGKR--VGTIKQIQDQGENVKEAKAGMEVAI 532 (586)
T ss_pred hhhheeeceEEEEEccceeEecCC-CeEEEEEEEeCEEecCCE--EEEECCEE--EEEEehhhccCCcccEeCCCCEEEE
Confidence 5899999999 8999888 799999999999999995 889 8864 5999999999999999999999999
Q ss_pred cchhh
Q psy1758 542 LSRIE 546 (1527)
Q Consensus 542 ~~r~~ 546 (1527)
.+..+
T Consensus 533 ~i~~~ 537 (586)
T PRK04004 533 SIDGP 537 (586)
T ss_pred EEecc
Confidence 99877
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-71 Score=719.25 Aligned_cols=454 Identities=29% Similarity=0.455 Sum_probs=410.0
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccc--eecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCC
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA--RIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPG 994 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~--~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPG 994 (1527)
++++++|||+|+||+|||||||+++|++.+|.+.+.+.+.+ +++|+.+.|++||+|+++....+.|++++++||||||
T Consensus 5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG 84 (689)
T TIGR00484 5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPG 84 (689)
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCC
Confidence 45678999999999999999999999999998876655543 8999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcc----
Q psy1758 995 HADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA---- 1070 (1527)
Q Consensus 995 h~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~---- 1070 (1527)
|.+|..++.++++.+|++|+|||+.+|+..||+.+|..+...++|+++|+||+|+..++++.+++++.+.+.....
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~i 164 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQL 164 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEe
Confidence 9999999999999999999999999999999999999999999999999999999988888888888775432000
Q ss_pred ---------------------------------------------------------cc--------------c------
Q psy1758 1071 ---------------------------------------------------------TE--------------E------ 1073 (1527)
Q Consensus 1071 ---------------------------------------------------------~~--------------~------ 1073 (1527)
.+ +
T Consensus 165 pis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l 244 (689)
T TIGR00484 165 PIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNAI 244 (689)
T ss_pred ccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHH
Confidence 00 0
Q ss_pred ------ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC-------------------CCCCCceeEEEe
Q psy1758 1074 ------QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD-------------------NSNNPLQLQIIS 1128 (1527)
Q Consensus 1074 ------~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~-------------------~~~~p~~~~V~~ 1128 (1527)
..-+|++++||+++. |+++||++|+.++|+|.. ++++||+++|||
T Consensus 245 ~~~~~~~~~~PV~~gSa~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK 314 (689)
T TIGR00484 245 RKGVLNCEFFPVLCGSAFKNK----------GVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFK 314 (689)
T ss_pred HHHHhcCCEEEEEeccccCCc----------cHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEE
Confidence 011678888888887 999999999999999852 346799999999
Q ss_pred eeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeC
Q psy1758 1129 LEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICD 1208 (1527)
Q Consensus 1129 ~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~ 1208 (1527)
+.+|++.|+++++|||||+|+.||.|++... ...++|.+|+.+.|.++.++++|.|||||++.|++++.+||||++
T Consensus 315 ~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~----~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~ 390 (689)
T TIGR00484 315 VATDPFVGQLTFVRVYSGVLKSGSYVKNSRK----NKKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDTTTGDTLCD 390 (689)
T ss_pred eeecCCCCeEEEEEEEEeEEcCCCEEEeCCC----CceEEecceEEeecCCcccccccCCCCEEEEcCCCCCCCCCEEeC
Confidence 9999999999999999999999999997654 235789999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHH
Q psy1758 1209 PSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTIL 1288 (1527)
Q Consensus 1209 ~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl 1288 (1527)
.+.+..++++++++|++++++.|+++. +..+|.++|.++.++||+|+|..++++|+ +.|+|+|||||+|+
T Consensus 391 ~~~~~~~~~~~~~~Pvl~~~i~p~~~~---------d~~kL~~aL~~L~~eDpsl~v~~~~etge-~il~g~GelHLei~ 460 (689)
T TIGR00484 391 PKIDVILERMEFPEPVISLAVEPKTKA---------DQEKMGIALGKLAEEDPTFRTFTDPETGQ-TIIAGMGELHLDII 460 (689)
T ss_pred CCCccccCCCCCCCceEEEEEEECCcc---------cHHHHHHHHHHHHHhCCEEEEEECCCCCC-EEEEEeeHHHHHHH
Confidence 887778888888999999999987642 35799999999999999999999999999 99999999999999
Q ss_pred HHHHHhc-CcEEEEecCeeeEEEe-------c------------------------------------------------
Q psy1758 1289 IENMRRE-GYELSVSRPRVIFKTL-------N------------------------------------------------ 1312 (1527)
Q Consensus 1289 ~e~lrre-g~ev~vs~P~V~yre~-------~------------------------------------------------ 1312 (1527)
+++|+++ |+|+.+++|+|+|||+ .
T Consensus 461 ~~~L~~~~~vev~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~~~g~~~~~~i~~g~~~~~~~~av~ 540 (689)
T TIGR00484 461 VDRMKREFKVEANVGAPQVAYRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEPKGYEFVNEIKGGVIPREYIPAVD 540 (689)
T ss_pred HHHHHHHhCCeeEecCCEEEEeecccCccccccccccccCCCCceEEEEEEEEECCCCCcEEEEeccCCcCCHHHHHHHH
Confidence 9999975 9999999999999994 0
Q ss_pred ---------c----------------------------------------------eEeeeeEEEEEEecCcchHHHHHH
Q psy1758 1313 ---------G----------------------------------------------ELYEPYENLFVDIEEINQGIIMQK 1337 (1527)
Q Consensus 1313 ---------g----------------------------------------------~llEP~~~~~i~vp~e~~G~v~~~ 1337 (1527)
| .+||||++++|.+|++|+|+||++
T Consensus 541 ~g~~~a~~~GpL~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~ 620 (689)
T TIGR00484 541 KGLQEAMESGPLAGYPVVDIKATLFDGSYHDVDSSEMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGD 620 (689)
T ss_pred HHHHHHHhcCCcCCCceeeEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEecHHHhHhHHHH
Confidence 0 389999999999999999999999
Q ss_pred HhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1338 LNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1338 l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|++|||++.+|+..+ ++.+|++.+|++|++||.++|+++|+|+|+|++.|+||++++
T Consensus 621 L~~rrg~i~~~~~~~-~~~~I~a~vP~~e~~g~~~~Lrs~T~G~~~~~~~f~~y~~v~ 677 (689)
T TIGR00484 621 LSSRRGIIEGMEARG-NVQKIKAEVPLSEMFGYATDLRSFTQGRGTYSMEFLHYGEVP 677 (689)
T ss_pred HHhcCCeEecccccC-CcEEEEEEeCHHHHhChHHHHHHhcCCceEEEEEeccceeCC
Confidence 999999999998754 689999999999999999999999999999999999999997
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-71 Score=686.24 Aligned_cols=448 Identities=32% Similarity=0.516 Sum_probs=377.8
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC------------------eEEEEEeCCChhh
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH------------------GSITFLDTPGHEA 128 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~------------------~~i~~iDTPG~e~ 128 (1527)
.|+|.|+++||+|||||||+++|++..+...+.+++|++++...+.++. ..++|||||||+.
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 4889999999999999999999999988888888899988877665431 1388999999999
Q ss_pred HHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch---------------hHHHH----
Q psy1758 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN---------------LDRIK---- 189 (1527)
Q Consensus 129 f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~---------------~~~~~---- 189 (1527)
|..++.++++.+|++++|+|++++..+++.+++..+...++|+++|+||+|+...- ...+.
T Consensus 82 f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~ 161 (590)
T TIGR00491 82 FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLD 161 (590)
T ss_pred HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999888899999999999996410 01111
Q ss_pred -------HHHhhhccccc------ccCCCCcEEEeeccCCCChhHHHHHHHHHHHH---HhhcCCCCCCCceEEEEEeec
Q psy1758 190 -------QDLISEQVIPE------EYGGASPFISISAKTGVGINKLLENISLQAEI---LELKAPVTTPAKGVIIESRLD 253 (1527)
Q Consensus 190 -------~~l~~~~~~~~------~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~---~~~~~~~~~p~~~~v~~~~~~ 253 (1527)
.++.+.+...+ +|++.++++++||++|+|+++|+++|..+... ..++.+.+.|+++.|++++.+
T Consensus 162 ~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~ 241 (590)
T TIGR00491 162 TKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKEE 241 (590)
T ss_pred HHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEEc
Confidence 12233333332 46778899999999999999999999765432 345667788999999999999
Q ss_pred CCCceEEEEEeeccEEEeccEEEeccee----eeEeEeeccCC-----------ceeeecCCC--cceEecCCCCCCCCC
Q psy1758 254 KGKGPVATVLIQSGTLRCSDIVVAGASY----GRIRSMLNENG-----------KNILEAGPS--IPVEIQGLTKVPFSG 316 (1527)
Q Consensus 254 ~~~G~v~~~~v~~G~l~~gd~vv~g~~~----~kVr~i~~~~g-----------~~v~~a~~~--~~v~I~gl~~~~~~G 316 (1527)
+|.|++++++|++|+|++||.|++|+.+ ++||+|++.++ ..++++.|+ .++.+.||.. +.+|
T Consensus 242 ~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~-~~aG 320 (590)
T TIGR00491 242 TGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDD-VMAG 320 (590)
T ss_pred CCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCC-CCCC
Confidence 9999999999999999999999999886 59999998763 456676655 4556678887 5899
Q ss_pred CeEEEeCChh--HHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCce
Q psy1758 317 EELFVILNEK--KAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKV 394 (1527)
Q Consensus 317 ~~~~~~~~e~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v 394 (1527)
+.|.++++++ ++++.+ .++ . +.. .+ +.+.+++|||||++||+|||.++|.++
T Consensus 321 ~~~~~~~~e~~~~~~~~~------~~~-----~-----~~~--~~---~~~~~~vivkad~~Gs~EAl~~~l~~~----- 374 (590)
T TIGR00491 321 SPIRVVTDEEIEKVKEEI------LKE-----V-----EEI--KI---DTDEEGVVVKADTLGSLEALVNELRDM----- 374 (590)
T ss_pred CEEEEcCcHHHHHHHHHH------HHH-----h-----hhc--cc---ccccccEEEEecCcchHHHHHHHHHhC-----
Confidence 9998887664 222111 000 0 000 01 245689999999999999999999987
Q ss_pred eeeEEeeccCcCChhhHHHHHhcC------CEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHHHHHHHHHHhccCCcce
Q psy1758 395 KIQVIHNAVGNINESDINLAIASK------AIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEK 468 (1527)
Q Consensus 395 ~i~iv~~~vG~it~~Dv~~A~~~~------a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~l~~~~ 468 (1527)
+++|++++||+||++||.+|++++ |+||||||+++++++++|+++||+|++|||||||+|+++++|+++++|++
T Consensus 375 ~i~i~~~~vG~it~~Dv~~A~~~~~~~~~~a~Il~Fnv~~~~~a~~~A~~~~v~i~~~~iIY~l~d~~~~~~~~~~~~~~ 454 (590)
T TIGR00491 375 GVPIKKADIGDVSKRDVVEAGIAKQEDRVYGAIIAFNVKVLPGAEQELKKYDIKLFSDNIIYRLMEEFEEWIEGIEEEKK 454 (590)
T ss_pred CCcEEEecCCCCcHhHHHHHhhcccCCCCceEEEEecCCCCHHHHHHHHHcCCEEEEeCcHHHHHHHHHHHHHhhhcchh
Confidence 489999999999999999999986 99999999999999999999999999999999999999999999999987
Q ss_pred e---eeeeEeEEEe----EEEEcCCCCeEEEEEEeeeEEeeCCeEEEee-CCeEEEEEEeceecccccccceeecCcccc
Q psy1758 469 K---ENLLGLAEIR----QVILVNKVSKIAGCYILEGLIRRDSKIRILR-NKNIIWTGELDSLKRFKDNVKEVKAGFECE 540 (1527)
Q Consensus 469 ~---e~~~g~a~v~----~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R-~~~~i~~g~i~Slk~~k~~V~ev~~G~ecg 540 (1527)
+ +.++|+|+|+ ++|+.++ +.||||+|++|+|++|++ |+| +++++ |+|.||||+|+||+||++|+|||
T Consensus 455 ~~~~~~~~~~a~v~il~~~vf~~~~-~~i~G~~V~~G~i~~~~~--v~r~~~~~i--G~i~slk~~k~~V~ev~~G~Ecg 529 (590)
T TIGR00491 455 RKWMEAIIKPAKIRLIPKLVFRQSK-PAIVGVEVLTGVIRQGYP--LMKDDGETV--GTVRSMQDKGENVKSASAGQEVA 529 (590)
T ss_pred hhhcceeEEEEEEEEeeheeeeCCC-CeEEEEEEecCEEecCCe--EEecCCEEE--EEEchhcccCccccEECCCCEEE
Confidence 6 7899999999 8999888 799999999999999986 678 46554 99999999999999999999999
Q ss_pred ccchhh
Q psy1758 541 RLSRIE 546 (1527)
Q Consensus 541 r~~r~~ 546 (1527)
+.+..+
T Consensus 530 i~i~~~ 535 (590)
T TIGR00491 530 IAIKDV 535 (590)
T ss_pred EEEeCc
Confidence 999764
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-71 Score=716.84 Aligned_cols=453 Identities=30% Similarity=0.455 Sum_probs=409.6
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCccccccccc--ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCC
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH 995 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh 995 (1527)
+.+++|||+|+||+|||||||+++|++.+|.+.+.+.+. .+++|+.+.|++||+|+++....+.|+++++++||||||
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~ 83 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGH 83 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCH
Confidence 467899999999999999999999999988876655444 489999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhc------
Q psy1758 996 ADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC------ 1069 (1527)
Q Consensus 996 ~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~------ 1069 (1527)
.+|..++.++++.+|++|+||||.+|++.||+.+|..+.+.++|.|+|+||||+.+++.+..++++++.+....
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~~iP 163 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQLP 163 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEec
Confidence 99999999999999999999999999999999999999999999999999999998888888888877653200
Q ss_pred ----------------------cc---------------------------------cc---------------------
Q psy1758 1070 ----------------------AT---------------------------------EE--------------------- 1073 (1527)
Q Consensus 1070 ----------------------~~---------------------------------~~--------------------- 1073 (1527)
.. ++
T Consensus 164 is~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l 243 (691)
T PRK12739 164 IGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAAI 243 (691)
T ss_pred ccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHHH
Confidence 00 00
Q ss_pred ------ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC-------------------CCCCCceeEEEe
Q psy1758 1074 ------QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD-------------------NSNNPLQLQIIS 1128 (1527)
Q Consensus 1074 ------~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~-------------------~~~~p~~~~V~~ 1128 (1527)
..-+|++++||.++. |+++||++|++++|+|.. ++++||.++|||
T Consensus 244 ~~~~~~~~~~Pv~~gSa~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK 313 (691)
T PRK12739 244 RKATINMEFFPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFK 313 (691)
T ss_pred HHHHHcCCEEEEEeccccCCc----------cHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEE
Confidence 001588999999988 999999999999999842 457899999999
Q ss_pred eeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeC
Q psy1758 1129 LEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICD 1208 (1527)
Q Consensus 1129 ~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~ 1208 (1527)
+.+|++.|+++|+|||||+|++||.|++..+ + ..++|.+|+.+.|.++.+++++.|||||+|.|++++.+||||++
T Consensus 314 ~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~--~--~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~ 389 (691)
T PRK12739 314 IMTDPFVGRLTFFRVYSGVLESGSYVLNTTK--G--KKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDTTTGDTLCD 389 (691)
T ss_pred eeeCCCCCeEEEEEEeeeEEcCCCEEEeCCC--C--ceEEecceEEEecCCcccccccCCCCEEEEeCCCcccCCCEEeC
Confidence 9999999999999999999999999987654 2 35789999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHH
Q psy1758 1209 PSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTIL 1288 (1527)
Q Consensus 1209 ~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl 1288 (1527)
.+.+..++++.+++|++.+++.|.+. . +..+|.++|.++.++||+|+|++++++++ +.++|+|||||+|+
T Consensus 390 ~~~~~~l~~~~~~~Pv~~~aiep~~~----~-----d~~kL~~aL~~L~~eDpsl~v~~~~etge-~il~g~GelHLei~ 459 (691)
T PRK12739 390 EKAPIILESMEFPEPVISLAVEPKTK----A-----DQDKMGLALQKLAEEDPTFRVETDEETGQ-TIISGMGELHLDII 459 (691)
T ss_pred CCCccccCCCCCCCceEEEEEEECCc----c-----cHHHHHHHHHHHHHhCCeEEEEEcCCCCC-EEEEEecHHHHHHH
Confidence 87777788888899999999998753 1 35799999999999999999999999999 99999999999999
Q ss_pred HHHHHhc-CcEEEEecCeeeEEEe-------c------------------------------------------------
Q psy1758 1289 IENMRRE-GYELSVSRPRVIFKTL-------N------------------------------------------------ 1312 (1527)
Q Consensus 1289 ~e~lrre-g~ev~vs~P~V~yre~-------~------------------------------------------------ 1312 (1527)
+++|+++ |+|+.+++|+|+|||+ .
T Consensus 460 ~~rL~~~f~vev~~s~p~V~yrEti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~~~~~~~~~~~i~~g~~~~~~~~av 539 (691)
T PRK12739 460 VDRMKREFKVEANVGAPQVAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEGKGFEFVNKIVGGVIPKEYIPAV 539 (691)
T ss_pred HHHHHHHhCCeeEecCCEEEEeeccCCcccccceeccccCCCCceeEEEEEEEECCCCCCcEEEEeccCCcCcHHHHHHH
Confidence 9999865 9999999999999994 0
Q ss_pred ----------c----------------------------------------------eEeeeeEEEEEEecCcchHHHHH
Q psy1758 1313 ----------G----------------------------------------------ELYEPYENLFVDIEEINQGIIMQ 1336 (1527)
Q Consensus 1313 ----------g----------------------------------------------~llEP~~~~~i~vp~e~~G~v~~ 1336 (1527)
| .+||||++++|.||++|+|+||+
T Consensus 540 ~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~ 619 (691)
T PRK12739 540 EKGLEEAMKNGVLAGYPMVDVKATLYDGSYHDVDSSELAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIG 619 (691)
T ss_pred HHHHHHHHhcCCcCCCceeeEEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEEchHhhhhHHH
Confidence 0 58999999999999999999999
Q ss_pred HHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1337 KLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1337 ~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
+|++|||++++++..+ ++..|++.+|++|++||.++|+++|+|+|+|++.|+||++++
T Consensus 620 ~L~~RRg~i~~~~~~~-~~~~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~ 677 (691)
T PRK12739 620 DLNRRRGQIQGMEARG-GAQIVKAFVPLSEMFGYATDLRSATQGRATFSMEFDHYEEVP 677 (691)
T ss_pred HHHhcCCeEECccccC-CcEEEEEEeCHHHhhccHHHHHhhccCceEEEEEeccceECC
Confidence 9999999999999864 678899999999999999999999999999999999999997
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-70 Score=709.95 Aligned_cols=463 Identities=29% Similarity=0.469 Sum_probs=401.0
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe----cCeEEEEEeCC
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY----NGTRINIIDTP 993 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~----~~~~iniiDTP 993 (1527)
+.+++|||+|+||+|||||||+++|++.+|.+.+......++||+.+.|++||+|+.++..++.| +++++||+|||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 95 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP 95 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence 35789999999999999999999999999988775444468899999999999999999998888 47899999999
Q ss_pred CCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhh------
Q psy1758 994 GHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDK------ 1067 (1527)
Q Consensus 994 Gh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~------ 1067 (1527)
||.||..++.++++.+|++|+|||+.+|+++||+.+|+.+.+.++|+|+|+||||+..+++....+++++.|..
T Consensus 96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~ 175 (731)
T PRK07560 96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVN 175 (731)
T ss_pred CccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999876654444444433321
Q ss_pred -----hcccc-------cccCCcEEEeccccCCcCCCcc--cc------------c----------CCChhHHHHHHhhc
Q psy1758 1068 -----LCATE-------EQLDFPVIYTSALHGYANENSK--AR------------Q----------GNMIPLFEAILKYV 1111 (1527)
Q Consensus 1068 -----l~~~~-------~~~~~pvi~~SA~~g~~~~~~~--~~------------~----------~gi~~Ll~~i~~~l 1111 (1527)
+.... ...+-.++++||+.+|+..... .. . .=++.||++|++++
T Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~l 255 (731)
T PRK07560 176 KLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHL 255 (731)
T ss_pred HHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhC
Confidence 11110 0112357889999998432000 00 0 00127999999999
Q ss_pred CCCCC-------------------------CCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCc
Q psy1758 1112 PVHKD-------------------------NSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNK 1166 (1527)
Q Consensus 1112 p~p~~-------------------------~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~ 1166 (1527)
|+|.. ++++||.++|||+.+|++.|+++++||+||+|++||.|++.+. ...
T Consensus 256 PsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~----~~~ 331 (731)
T PRK07560 256 PNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGA----KKK 331 (731)
T ss_pred CChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCC----CCc
Confidence 99952 4467999999999999999999999999999999999999866 235
Q ss_pred ceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCCCCCC-ccCCCceeEEEEecCCCCCCCCCcccc
Q psy1758 1167 AKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPML-NIDEPTLTINFMVNNSPLAGREGKFIT 1245 (1527)
Q Consensus 1167 ~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~-~~~~P~l~~~~~~~~~p~~g~e~~~~~ 1245 (1527)
.+|.+|+.++|.+..++++|.|||||+++|++++.+||||++.....+++++ .+++|++++++.|.+. . +
T Consensus 332 ~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~GdtL~~~~~~~~~~~~~~~p~Pv~~~aI~p~~~----~-----d 402 (731)
T PRK07560 332 NRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDARAGETVVSVEDMTPFESLKHISEPVVTVAIEAKNP----K-----D 402 (731)
T ss_pred eEeheehhhhcCCCceeeeECCCCEEEEEcccccccCCEEeCCCccccccccccCCCCeEEEEEEECCH----H-----H
Confidence 7899999999999999999999999999999999999999988777778776 4789999999998653 1 3
Q ss_pred HHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHh-cCcEEEEecCeeeEEEe-------------
Q psy1758 1246 TRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRR-EGYELSVSRPRVIFKTL------------- 1311 (1527)
Q Consensus 1246 ~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrr-eg~ev~vs~P~V~yre~------------- 1311 (1527)
.++|.++|.++.++||+|+|+.++++++ ++++|+|||||+|+++||++ +|+++.+++|+|+|||+
T Consensus 403 ~~kL~~aL~~L~~eDPsl~v~~~~etge-~~l~g~GElHLei~~~rL~~~~~vev~~~~p~V~yrETI~~~~~~~~~~~~ 481 (731)
T PRK07560 403 LPKLIEVLRQLAKEDPTLVVKINEETGE-HLLSGMGELHLEVITYRIKRDYGIEVVTSEPIVVYRETVRGKSQVVEGKSP 481 (731)
T ss_pred HHHHHHHHHHHHhhCCcEEEEEcCCCCC-eEEEcCCHHHHHHHHHHHHHHhCCceEecCCEEEEEEecccCccceEEECC
Confidence 5899999999999999999999999999 99999999999999999975 69999999999999986
Q ss_pred ----------------c-------------------------------------------c-------------------
Q psy1758 1312 ----------------N-------------------------------------------G------------------- 1313 (1527)
Q Consensus 1312 ----------------~-------------------------------------------g------------------- 1313 (1527)
. |
T Consensus 482 ~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~i~~~~~~~~f~~~~~gg~~~~~~~~a 561 (731)
T PRK07560 482 NKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEAKILREKLIEAGMDKDEAKRVWAIYNGNVFIDMTKGIQYLNEVMEL 561 (731)
T ss_pred CCceEEEEEEEECCHHHHHHHhcCCcccccchHHHHHHHHhhhhcCCchhhhhceeeccCCeEEEECCCCccCHHHHHHH
Confidence 1 2
Q ss_pred ------------------------------------------------------------eEeeeeEEEEEEecCcchHH
Q psy1758 1314 ------------------------------------------------------------ELYEPYENLFVDIEEINQGI 1333 (1527)
Q Consensus 1314 ------------------------------------------------------------~llEP~~~~~i~vp~e~~G~ 1333 (1527)
.+||||++++|.+|++|+|+
T Consensus 562 v~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~g~ 641 (731)
T PRK07560 562 IIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAMLTAKPTLLEPIQKVDINVPQDYMGA 641 (731)
T ss_pred HHHHHHHHHhcCCccCCceeeEEEEEEEeeecccccccccchHHHHHHHHHHHHHHhCCCEEeecEEEEEEEecHHHhhH
Confidence 48999999999999999999
Q ss_pred HHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1334 IMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1334 v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
||.+|++|||++++|+.. +++..|++.+|+++++||.++|+++|+|+|+|++.|+||++++
T Consensus 642 v~~~L~~rrg~i~~~~~~-~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 702 (731)
T PRK07560 642 VTREIQGRRGKILDMEQE-GDMAIIEAEAPVAEMFGFAGEIRSATEGRALWSTEFAGFEPVP 702 (731)
T ss_pred HHHHHHhcCCeeeeeecC-CCcEEEEEEEehHHhcCCchHHHhhCcCCceEEEEeccceeCC
Confidence 999999999999999874 4678999999999999999999999999999999999999997
|
|
| >PRK04642 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-72 Score=631.82 Aligned_cols=255 Identities=42% Similarity=0.675 Sum_probs=243.5
Q ss_pred cceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccC
Q psy1758 660 NIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTET 739 (1527)
Q Consensus 660 ~~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt 739 (1527)
+.|||||+||||.||||||||+++||+|+.+||||+|||||+||||||||+|+|||+++|++..+|+|+++++||.+|||
T Consensus 7 ~~m~Gil~i~KP~G~TS~dvv~~vrr~~~~kKvGH~GTLDP~AtGvL~v~~G~aTkl~~~l~~~~K~Y~a~~~lG~~TdT 86 (300)
T PRK04642 7 RRLDGILLLDKPAGLSSNNALQAARRLLRAEKGGHTGSLDPLATGLLPLCFGEATKIAGLLLGSAKAYDAEIVLGVTTDT 86 (300)
T ss_pred CCcCeEEEEecCCCCCHHHHHHHHHHHhCCCcccCCCccCCcCeeeEEEEEChhhhhhHHhcCCCcEEEEEEEECccccC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCe
Q psy1758 740 GDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPY 819 (1527)
Q Consensus 740 ~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~ 819 (1527)
+|++|+|+++.++.+++.++++++|++|.|+++|+||+|||+|+||+|||+|||+|++|++++|+|+||++++++|+.|.
T Consensus 87 ~D~~G~v~~~~~~~~~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkrlY~lAR~G~~ve~~~R~v~I~~~~ll~~~~~~ 166 (300)
T PRK04642 87 DDADGQVLRERPVPDLSAAALQAALAPLIGRIRQRAPIYSALKQGGEPLYAKARRGEVIEAPVREVEVHAIEVLGYAAPR 166 (300)
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHCCCcEEEeCCchHeEeECCeeHHHHHhCCCccccCcEEEEEEEEEEEEEeCCE
Confidence 99999999998887889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhh--ccccCcccccccccceee
Q psy1758 820 LTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYER--ISSLIPIDILLSSFGIIY 897 (1527)
Q Consensus 820 ~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~--~~~L~pie~~L~~lP~i~ 897 (1527)
+.|+|+|||||||||||+|||.+|||+|||+.||||++|+|++++|++++++.+...... .+.|+|++.++.++|.+.
T Consensus 167 ~~~~v~cskGTYIRSL~~Dig~~Lg~~a~m~~L~Rt~~G~f~~~~a~~l~~l~~~~~~~~~~~~~l~p~~~~l~~lp~v~ 246 (300)
T PRK04642 167 LRLRVTCGSGTYIRSLARDLGEVLGCGAHIAALRRLWVEPFRAPQMITLEALEAALEAGAEADTLLLPLAAGLADFPRIE 246 (300)
T ss_pred EEEEEEeCCCcCHHHHHHHHHHHhCCCEEEEEeEeeEECCcchHHCccHHHHHHhHhcccchhhcccCHHHHHhhCCEEE
Confidence 999999999999999999999999999999999999999999999999999976432211 246999999999999999
Q ss_pred ecccccceeccCccccc
Q psy1758 898 LSDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 898 l~d~~~~~i~nG~~i~l 914 (1527)
++++.+..+.||+.+..
T Consensus 247 l~~~~~~~i~~G~~i~~ 263 (300)
T PRK04642 247 LDATLAARFRMGQRLRD 263 (300)
T ss_pred eCHHHHHHHHCcCccCC
Confidence 99999999999998853
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-69 Score=700.28 Aligned_cols=455 Identities=30% Similarity=0.512 Sum_probs=411.3
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCccccccccc--ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCC
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPG 994 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPG 994 (1527)
++++++|||+|+||+|||||||+++|++.+|.+.+.+.++ .+.+|+.+.|++||+|+.++...+.|++++++||||||
T Consensus 3 ~~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG 82 (687)
T PRK13351 3 MPLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPG 82 (687)
T ss_pred CccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCC
Confidence 3567899999999999999999999999988877665554 36899999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcc----
Q psy1758 995 HADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA---- 1070 (1527)
Q Consensus 995 h~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~---- 1070 (1527)
|.||..++.++++.+|++++|+|+++|+..|+..+|..+...++|+++|+||+|+.++++.++++++++.|.....
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 162 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQL 162 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999998876532100
Q ss_pred ----------------------------c---------------------------------------cc----------
Q psy1758 1071 ----------------------------T---------------------------------------EE---------- 1073 (1527)
Q Consensus 1071 ----------------------------~---------------------------------------~~---------- 1073 (1527)
. ..
T Consensus 163 P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~ 242 (687)
T PRK13351 163 PIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAP 242 (687)
T ss_pred ccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHH
Confidence 0 00
Q ss_pred -------ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC------------------CCCCCceeEEEe
Q psy1758 1074 -------QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD------------------NSNNPLQLQIIS 1128 (1527)
Q Consensus 1074 -------~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~------------------~~~~p~~~~V~~ 1128 (1527)
..-+|++++||++|. |++.||++|+.++|+|.. ++++|+.++|||
T Consensus 243 ~~~~~~~~~~~PV~~gSA~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK 312 (687)
T PRK13351 243 LREGTRSGHLVPVLFGSALKNI----------GIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFK 312 (687)
T ss_pred HHHHHHhCCEEEEEecccCcCc----------cHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEE
Confidence 012789999999998 999999999999999952 457899999999
Q ss_pred eeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeC
Q psy1758 1129 LEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICD 1208 (1527)
Q Consensus 1129 ~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~ 1208 (1527)
+.++++.|+++++||+||+|++||+|++.++ ...++|.+|+.+.|.++.++++|.||||+++.|++++.+||||++
T Consensus 313 ~~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~----~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~ 388 (687)
T PRK13351 313 VQYDPYAGKLTYLRVYSGTLRAGSQLYNGTG----GKREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKELETGDTLHD 388 (687)
T ss_pred eeecCCCceEEEEEEeEEEEcCCCEEEeCCC----CCceEeeeEEEEccCCeeECCccCCCCEEEEECcccCccCCEEeC
Confidence 9999999999999999999999999999765 235789999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHH
Q psy1758 1209 PSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTIL 1288 (1527)
Q Consensus 1209 ~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl 1288 (1527)
...+.+++++..++|++++++.|.+. . +..+|.++|.++.++||+|+|+.++++++ +.++|+|||||+|+
T Consensus 389 ~~~~~~~~~~~~~~pv~~~~Iep~~~----~-----d~~kL~~aL~~L~~eDpsl~v~~~~etge-~ii~g~GelHLei~ 458 (687)
T PRK13351 389 SADPVLLELLTFPEPVVSLAVEPERR----G-----DEQKLAEALEKLVWEDPSLRVEEDEETGQ-TILSGMGELHLEVA 458 (687)
T ss_pred CCCccccCCCCCCCccEEEEEEECCc----c-----cHHHHHHHHHHHHHhCCeEEEEECCCCCC-EEEEEecHHHHHHH
Confidence 87666777888899999999998653 1 35799999999999999999999999999 99999999999999
Q ss_pred HHHHHhc-CcEEEEecCeeeEEEe--c-----------------------------------------------------
Q psy1758 1289 IENMRRE-GYELSVSRPRVIFKTL--N----------------------------------------------------- 1312 (1527)
Q Consensus 1289 ~e~lrre-g~ev~vs~P~V~yre~--~----------------------------------------------------- 1312 (1527)
++||+++ |+|+.+++|+|+|||+ .
T Consensus 459 ~~rL~~~~~vev~~~~p~V~y~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~~~g~~~~~~~~~~~~~~~~~~ai 538 (687)
T PRK13351 459 LERLRREFKLEVNTGKPQVAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERGAGFIFVSKVVGGAIPEELIPAV 538 (687)
T ss_pred HHHHHHHhCCceEecCCeEEEEeeccccccccceeeeccCCCceEEEEEEEEEECCCCCCcEEeecccCCcCCHHHHHHH
Confidence 9999975 9999999999999995 0
Q ss_pred ----------c----------------------------------------------eEeeeeEEEEEEecCcchHHHHH
Q psy1758 1313 ----------G----------------------------------------------ELYEPYENLFVDIEEINQGIIMQ 1336 (1527)
Q Consensus 1313 ----------g----------------------------------------------~llEP~~~~~i~vp~e~~G~v~~ 1336 (1527)
| .+||||++++|.+|++|+|+||+
T Consensus 539 ~~g~~~a~~~GpL~~~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~ 618 (687)
T PRK13351 539 EKGIREALASGPLAGYPVTDLRVTVLDGKYHPVDSSESAFKAAARKAFLEAFRKANPVLLEPIMELEITVPTEHVGDVLG 618 (687)
T ss_pred HHHHHHHHhcCCCCCCceeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEechHhhhhHHH
Confidence 1 58999999999999999999999
Q ss_pred HHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1337 KLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1337 ~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
+|++|||++++++..+++...|++.+|++|++||.++|+++|+|+|+|+++|+||++++
T Consensus 619 ~l~~rrg~i~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~a~~~~~f~~y~~v~ 677 (687)
T PRK13351 619 DLSQRRGRIEGTEPRGDGEVLVKAEAPLAELFGYATRLRSMTKGRGSFTMEFSHFDPVP 677 (687)
T ss_pred HHHhCCcEEeceecCCCcEEEEEEEECHHHhhChHHHHHhhcCCceEEEEEeccceeCC
Confidence 99999999999998654555599999999999999999999999999999999999997
|
|
| >PRK01851 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-72 Score=631.34 Aligned_cols=256 Identities=53% Similarity=0.852 Sum_probs=243.4
Q ss_pred cccceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccc
Q psy1758 658 NKNIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITT 737 (1527)
Q Consensus 658 ~~~~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~t 737 (1527)
..+.|||||+||||.||||||||+++||+|+.+|+||+|||||+||||||||+|+|||+++|++..+|+|+++++||.+|
T Consensus 11 ~~~~~~Gil~i~KP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~l~~~~K~Y~~~~~lG~~T 90 (303)
T PRK01851 11 PRRPVDGVLLLDKPLGLSSNDALQRAKRLLRAKKAGHTGTLDPLATGLLPLCFGEATKFSQDLLDADKTYEATLRLGVRT 90 (303)
T ss_pred CCCCCCeEEEEeCCCCCCHHHHHHHHHHHhCcccCCCCCCCCCCCceEEEEEECHHHhhhHHhcccCeEEEEEEEECCcc
Confidence 33458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC
Q psy1758 738 ETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI 817 (1527)
Q Consensus 738 dt~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~ 817 (1527)
||+|++|+|++++++. ++.++++++|++|+|+++|+||+|||+|+||+|||+|||+|++|++++|+|+||++++++|+.
T Consensus 91 dT~D~~G~v~~~~~~~-~t~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~R~v~I~~i~ll~~~~ 169 (303)
T PRK01851 91 STGDAEGEVLATRPVD-CDPAALEAALARFTGEIRQVPPMYSALKKDGKPLYEYARAGITVEREARDVTIHALDLLACDL 169 (303)
T ss_pred CCCCCCCCEEeecCCC-CCHHHHHHHHHhccCeeeeeCCchheEeeCCeeHHHHHhCCCccccCCcceEEEEEEEEEEeC
Confidence 9999999999998876 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccccceee
Q psy1758 818 PYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIY 897 (1527)
Q Consensus 818 ~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~lP~i~ 897 (1527)
|.++|+|+||+||||||||||||.+|||+|||+.|||+++|+|++++|++++++.+.......+.|+|++.++.++|.+.
T Consensus 170 ~~~~~~v~cskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~~~~a~~l~~l~~~~~~~~~~~l~p~~~~l~~lp~v~ 249 (303)
T PRK01851 170 PDVTIRVTCSKGTYIRTLAEDIGEALGCGAHLTALRRTGVGGLTLEQAVTLEALEAADEAERDALLAPVDALLSTFPRVT 249 (303)
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCCchHHcCCHHHHHhchhhhhhhhcCCHHHHHhhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999976432222346899999999999999
Q ss_pred ecccccceeccCccccc
Q psy1758 898 LSDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 898 l~d~~~~~i~nG~~i~l 914 (1527)
++++....+.||+.+..
T Consensus 250 l~~~~~~~i~~G~~i~~ 266 (303)
T PRK01851 250 LDADAAGRFLHGQRLRL 266 (303)
T ss_pred eCHHHHHHHHCcCcccc
Confidence 99999999999999864
|
|
| >PRK05033 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-71 Score=628.41 Aligned_cols=254 Identities=46% Similarity=0.789 Sum_probs=242.6
Q ss_pred cceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccC
Q psy1758 660 NIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTET 739 (1527)
Q Consensus 660 ~~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt 739 (1527)
+.|||||+||||.||||||||+++|++++.+||||+|||||+||||||||+|+|||+++|++..+|+|+++++||.+|||
T Consensus 7 ~~~~Gil~i~KP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~~~~~~K~Y~a~~~lG~~TdT 86 (312)
T PRK05033 7 RDINGVLLLDKPQGMSSNDALQKVKRLFNANKAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVTARLGQRTDT 86 (312)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHhCCCCCCCCCcCCCcCeeEEEEEECHHhhhhHHhcCCCcEEEEEEEECCcccC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCe
Q psy1758 740 GDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPY 819 (1527)
Q Consensus 740 ~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~ 819 (1527)
+|++|+|++++++ ++|.++++++|++|+|+++|+||+|||+|+||+|||+|||+|++|++++|.|+||+|++++|+.|.
T Consensus 87 ~D~~G~v~~~~~~-~~t~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~~~ 165 (312)
T PRK05033 87 SDADGEVVEERPV-TLSAEQLEAALEKFRGDIEQVPSMYSALKYQGQPLYEYARQGIEVEREARPITIYELELIRFEGDE 165 (312)
T ss_pred CCCCCCEEEeecC-CCCHHHHHHHHHHCcCcEEEeCChhHeEeeCCeEHHHHHhCCcccccCceeEEEEEEEEeeEeCCE
Confidence 9999999999887 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhh---------hc-cccCccccc
Q psy1758 820 LTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYE---------RI-SSLIPIDIL 889 (1527)
Q Consensus 820 ~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~---------~~-~~L~pie~~ 889 (1527)
++|+|+||+||||||||||||.+|||+|||++|||+++|+|++++|++++++.+....+ .+ ..|+|++.+
T Consensus 166 ~~~~v~cs~GTYIRsL~~Dig~~Lg~~a~~~~LrRt~~G~f~~~~a~~l~~l~~~~~~~~~~~~~~~~~l~~~llp~~~~ 245 (312)
T PRK05033 166 LELEVHCSKGTYIRTLVDDLGEKLGCGAHVIYLRRTQVAPYPLERMVTLEQLEALVEQAEQQEIPPAELLDPLLLPMDSA 245 (312)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCcccccccCHHHHHHhhhhhccccccchhhHhhhhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999997643221 12 369999999
Q ss_pred ccccceeeecccccceeccCccccc
Q psy1758 890 LSSFGIIYLSDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 890 L~~lP~i~l~d~~~~~i~nG~~i~l 914 (1527)
+.++|.+.++++.+..+.||+.+..
T Consensus 246 l~~lp~v~l~~~~~~~i~~G~~i~~ 270 (312)
T PRK05033 246 VSDLPEVNLPEESAYYFKQGQPVRV 270 (312)
T ss_pred HhhCCeEEECHHHHHHHHCcCcccc
Confidence 9999999999999999999999865
|
|
| >PRK00130 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-71 Score=627.65 Aligned_cols=250 Identities=40% Similarity=0.689 Sum_probs=241.6
Q ss_pred eeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCC
Q psy1758 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 741 (1527)
Q Consensus 662 ~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d 741 (1527)
|||||+||||.||||||||+++||+|+.+|+||+|||||+||||||+|+|+|||+++|++..+|+|+++++||.+|||+|
T Consensus 1 m~Gil~i~KP~G~tS~dvv~~vrr~~~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~l~~~~K~Y~a~~~lG~~TdT~D 80 (290)
T PRK00130 1 MDGILNILKPPGMTSFDVVRKIRKIAKIKKVGHTGTLDPLASGVLPVCLGKATKIVDYLMEGKKTYRAEIKLGVETDTYD 80 (290)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCeeEEEEEEChhhhhHHHhccCCcEEEEEEEECCcccCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeEE
Q psy1758 742 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLT 821 (1527)
Q Consensus 742 ~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~~ 821 (1527)
++|+|++++++.|++.++++++|++|+|+++|+||+|||+|+||||||+|||+|++|++++|+|+||++++++|+.|.++
T Consensus 81 ~~G~i~~~~~~~~~t~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~l~~~~~~~~~ 160 (290)
T PRK00130 81 REGEILKEKEVSHLTEEEIREAILSFQGEIDQVPPMYSALKINGKKLYELARQGIEVEREARKITIYDIEILEIDLPYVI 160 (290)
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHccCeEEEECChHHeEecCCHhHHHHHHCCCccccCceEEEEEEEEEEEEeCCeEE
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccccceeeeccc
Q psy1758 822 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLSDL 901 (1527)
Q Consensus 822 ~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~lP~i~l~d~ 901 (1527)
|+|+||+||||||||||||.+|||+|||++|||+++|+|++++|++++++.+.. ....|+|++.++.++|.+.++++
T Consensus 161 ~~v~cskGTYIRsL~~Dig~~Lg~~a~~~~LrRt~~G~f~~~~a~~l~~l~~~~---~~~~l~p~~~~l~~lp~v~l~~~ 237 (290)
T PRK00130 161 FDVKCSKGTYIRSLCFDIGEKLNCGAYMWNLIRTETGPFNIENSITLEDLNEEN---IEDYIIPIDKALKHYPKVSLDEK 237 (290)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCCCHHHcCCHHHHhhhh---hhhhccCHHHHHhhCCEEEECHH
Confidence 999999999999999999999999999999999999999999999999996531 22468999999999999999999
Q ss_pred ccceeccCccccc
Q psy1758 902 LSKRFLHGQNLFL 914 (1527)
Q Consensus 902 ~~~~i~nG~~i~l 914 (1527)
.+..+.||+++..
T Consensus 238 ~~~~i~~G~~i~~ 250 (290)
T PRK00130 238 FEKLLLNGVKIKD 250 (290)
T ss_pred HHHHHHCcCcccc
Confidence 9999999999864
|
|
| >PRK02755 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-71 Score=626.14 Aligned_cols=251 Identities=38% Similarity=0.626 Sum_probs=239.8
Q ss_pred eeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCC
Q psy1758 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 741 (1527)
Q Consensus 662 ~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d 741 (1527)
|||||+||||.||||||||+++||+++.+|+||+|||||+||||||+|+|+|||+++|++. +|+|+++++||.+|||+|
T Consensus 2 m~Gil~i~KP~G~TS~dvv~~vrr~~~~kKvGH~GTLDP~AtGvL~i~vG~aTkl~~~l~~-~K~Y~a~~~lG~~TdT~D 80 (295)
T PRK02755 2 MFGFLNLDKPAGLTSHDCVARLRRLLRLKRVGHGGTLDPAATGVLPIALGKATRLLPYLPG-EKTYRGTIRFGVRTSTDD 80 (295)
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHhCCCccccCCCCCCcCeeEEEEEEChhhhhHHHhCC-CcEEEEEEEECCcccCCC
Confidence 7999999999999999999999999999999999999999999999999999999999997 999999999999999999
Q ss_pred CcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC---C
Q psy1758 742 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI---P 818 (1527)
Q Consensus 742 ~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~---~ 818 (1527)
.+|+|++++++.+++.++++++|++|+|+++|+||+|||+|+||+|||+|||+|++|++++|+++||++++++|+. |
T Consensus 81 ~~G~v~~~~~~~~~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~G~r~Y~lAR~G~~ve~~~r~v~I~~~~l~~~~~~~~~ 160 (295)
T PRK02755 81 LQGEILSSQPWPHLSLAEIETALPQFRGKIEQRPPQYSAIQVDGERLYALARRGETMELPARTVTIFRLQLLDWRPGDQP 160 (295)
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHhccCeEEEeCChhheEeeCCHhHHHHHHCCCccccCceEEEEEEEEEEEEcCCCCc
Confidence 9999999999989999999999999999999999999999999999999999999999999999999999999975 8
Q ss_pred eEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccccceeee
Q psy1758 819 YLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYL 898 (1527)
Q Consensus 819 ~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~lP~i~l 898 (1527)
.++|+|+|||||||||||||||.+|||+|||+.|||+++|+|++++|++++++.+..... ...|+|++.++.++|.+.+
T Consensus 161 ~~~~~v~cskGTYIRsL~~DiG~~Lg~~a~m~~LrRt~~G~f~~~~a~~l~~l~~~~~~~-~~~llp~~~~l~~lp~v~l 239 (295)
T PRK02755 161 ELDLEIHCGAGTYIRSLARDLGAVLGTGGTLAALRRTQSLGFHLAQSLPLPELENQLQAG-TFPLLPPDLALQHLPRVQL 239 (295)
T ss_pred eEEEEEEECCCcCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHcCCHHHHHhhhhcc-cceecCHHHHHccCCEEEE
Confidence 999999999999999999999999999999999999999999999999999996542211 1258999999999999999
Q ss_pred cccccceeccCccccc
Q psy1758 899 SDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 899 ~d~~~~~i~nG~~i~l 914 (1527)
+++.+..+.||+.+..
T Consensus 240 ~~~~~~~l~~G~~i~~ 255 (295)
T PRK02755 240 SAEEAQRWCCGQRIPL 255 (295)
T ss_pred CHHHHHHHHCcCcccc
Confidence 9999999999998854
|
|
| >PRK02484 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-71 Score=627.26 Aligned_cols=254 Identities=35% Similarity=0.619 Sum_probs=241.1
Q ss_pred ceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCC
Q psy1758 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 740 (1527)
Q Consensus 661 ~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~ 740 (1527)
+|||||+||||.||||||||+++||+++.+||||+|||||+||||||+|+|+|||+++|++..+|+|+++++||.+|||+
T Consensus 1 ~m~Gil~i~KP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~vG~aTkl~~~l~~~~K~Y~a~~~lG~~TdT~ 80 (294)
T PRK02484 1 MINGIINLKKEAGMTSHDAVFKLRKILQTKKIGHGGTLDPDVVGVLPIAVGKATRLIEYMTEAGKVYEGEITLGYSTTTE 80 (294)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHhCCCccccCCCCCCCCeeEEEEEEChhhhhhHHhccCCcEEEEEEEECCcccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEeecCCCC-CCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEE---Ee
Q psy1758 741 DIEGKIIDFNKNIP-NSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIID---YT 816 (1527)
Q Consensus 741 d~~g~v~~~~~~~~-~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~---~~ 816 (1527)
|++|+|++++++.+ ++.++++++|++|+|+++|+||+|||+|+||||||+|||+|++|++++|+|+||++++++ |+
T Consensus 81 D~~G~vi~~~~~~~~~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~l~~~~~~~ 160 (294)
T PRK02484 81 DASGEVVAETPLTQPLTEEEVDQAMTSFTGKITQIPPMYSAVKVNGKKLYEYARAGEEVERPKRQVTIYQFERTSPLSFD 160 (294)
T ss_pred CCCCCEEEeccCCCCCCHHHHHHHHHhccCeEEEeCChhHeEeeCCHhHHHHHHCCCccccCceEEEEEEEEEecccccc
Confidence 99999999999876 899999999999999999999999999999999999999999999999999999999984 62
Q ss_pred ---CCeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCccccccccc
Q psy1758 817 ---IPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSF 893 (1527)
Q Consensus 817 ---~~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~l 893 (1527)
.|.++|+|+||+||||||||||||.+|||+|||++|||+++|+|++++|++++++.+....+.++.|+|++.++.++
T Consensus 161 ~~~~~~~~~~v~cskGTYIRsL~~DiG~~Lg~~a~~~~L~Rt~~G~f~l~~a~~l~~l~~~~~~~~l~~l~p~~~~l~~l 240 (294)
T PRK02484 161 EDGLCRFSFRVACSKGTYVRTLAVDLGEKLGYAAHMSFLTRTASAGLTLEQAVTLEEIAEKVEAGELSFLQPIEYGVADL 240 (294)
T ss_pred ccCCceEEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHcCCHHHHHhhhhccchheecCHHHHHccC
Confidence 48999999999999999999999999999999999999999999999999999997643222234799999999999
Q ss_pred ceeeecccccceeccCccccc
Q psy1758 894 GIIYLSDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 894 P~i~l~d~~~~~i~nG~~i~l 914 (1527)
|.+.++++....+.||+.+..
T Consensus 241 p~v~l~~~~~~~i~~G~~i~~ 261 (294)
T PRK02484 241 PKVDLTPEQFTEVSFGRFISL 261 (294)
T ss_pred CeEEeCHHHHHHHHCcCcccc
Confidence 999999999999999999865
|
|
| >PRK01550 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-70 Score=625.96 Aligned_cols=253 Identities=39% Similarity=0.659 Sum_probs=240.2
Q ss_pred eeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCC
Q psy1758 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 741 (1527)
Q Consensus 662 ~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d 741 (1527)
|||||+||||+||||||||+++||+++.+|+||+|||||+||||||||+|+|||+++|++..+|+|+++++||.+|||+|
T Consensus 1 m~Gil~i~KP~G~TS~dvv~~vrr~~~~kKvGH~GTLDP~AtGvL~i~vG~aTkl~~~l~~~~K~Y~a~~~lG~~TdT~D 80 (304)
T PRK01550 1 MNGVLLLHKPRGMTSHDCVFKLRKILRTKKVGHTGTLDPEVSGVLPICVGRATKIAEYLTDEGKTYEGEVTLGFSTTTED 80 (304)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCCCcccCCCCCCcCeeEEEEEEChhhhhhHHhcCCCcEEEEEEEECCcccCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEeecCCCC-CCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEE-----
Q psy1758 742 IEGKIIDFNKNIP-NSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDY----- 815 (1527)
Q Consensus 742 ~~g~v~~~~~~~~-~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~----- 815 (1527)
++|+|++++++.+ ++.++++++|++|+|+++|+||+|||+|+||+|||+|||+|++|++++|+|+||+++++++
T Consensus 81 ~~G~v~~~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAvKv~Gkr~YelAR~G~~ve~~~r~v~I~~i~ll~~~~~~~ 160 (304)
T PRK01550 81 ADGEVVETKPVDRPITREEIEAALASLTGTIEQIPPMYSAVKVNGKKLYEYARAGIEVERPVRQITIHEFVLLDSREDFE 160 (304)
T ss_pred CCCCEEeeccCCCCCCHHHHHHHHHhccceEEEeCChhHeEecCCHhHHHHHHCCCccccCCcceEEEEEEEEeeccccc
Confidence 9999999988875 8999999999999999999999999999999999999999999999999999999999974
Q ss_pred -eCCeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhc-cccCccccccccc
Q psy1758 816 -TIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERI-SSLIPIDILLSSF 893 (1527)
Q Consensus 816 -~~~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~-~~L~pie~~L~~l 893 (1527)
+.|.+.|+|+|||||||||||||||.+|||+|||++|||+++|+|++++|++++++.+......+ +.|+|++.++.++
T Consensus 161 ~~~~~~~~~v~cskGTYIRsL~~Dig~~Lg~~a~~~~L~Rt~~G~f~~~~a~~le~l~~~~~~~~l~~~l~p~~~~l~~l 240 (304)
T PRK01550 161 GETQSFRFRVTCSKGTYVRTLAVMIGEKLGYPAHMSHLVRTASGGFTLEDCLTFEEIEENVQAGTVESILYPIDRALSHL 240 (304)
T ss_pred cCCceEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCCCHHHcCCHHHHHhhhhccchhhhcCCHHHHHhhC
Confidence 24899999999999999999999999999999999999999999999999999999764332223 3699999999999
Q ss_pred ceeeecccccceeccCccccc
Q psy1758 894 GIIYLSDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 894 P~i~l~d~~~~~i~nG~~i~l 914 (1527)
|.+.++++.+..+.||+.+..
T Consensus 241 p~v~l~~~~~~~i~~G~~i~~ 261 (304)
T PRK01550 241 PKLVIDEKQAEKVKNGAFLKN 261 (304)
T ss_pred CEEEECHHHHHHHHCcCcccc
Confidence 999999999999999998864
|
|
| >PRK05389 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-70 Score=624.63 Aligned_cols=255 Identities=33% Similarity=0.616 Sum_probs=241.9
Q ss_pred ccceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECcccc
Q psy1758 659 KNIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTE 738 (1527)
Q Consensus 659 ~~~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~td 738 (1527)
.+.|||||+||||.||||||||+++||.|+.+|+||+|||||+||||||||+|+|||+++|++..+|+|+++++||.+||
T Consensus 9 ~~~~~Gil~i~KP~G~TS~dvv~~vrk~~~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~l~~~~K~Y~a~~~lG~~Td 88 (305)
T PRK05389 9 GRPISGWLILDKPAGMTSTEAVSKVKWLFDAQKAGHAGTLDPLASGVLPIALGEATKTVPYVMDGTKRYRFTVAWGEERD 88 (305)
T ss_pred CCCCCeEEEEeCCCCCCHHHHHHHHHHHhcccccCCcccCCCCCceEEEEEEChhhhhhHHhccCCcEEEEEEEECCccc
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEE-eC
Q psy1758 739 TGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDY-TI 817 (1527)
Q Consensus 739 t~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~-~~ 817 (1527)
|+|++|+|++++++ +++.++++++|++|+|+++|+||+|||+|+||+|||+|||+|++|++++|+|+||++++++| +.
T Consensus 89 T~D~~G~v~~~~~~-~~~~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~~ 167 (305)
T PRK05389 89 TDDLEGEVTATSDV-RPTDEEIRAALPAFTGEIMQVPPQFSAIKIDGERAYDLAREGETVELPARPVEIDRLTLVERPDA 167 (305)
T ss_pred CCCCCCCEEEecCC-CCCHHHHHHHHHhccceEEEeCCchheEEECCHhHHHHHHCCCccccCceEEEEEEEEEEEecCC
Confidence 99999999998775 48999999999999999999999999999999999999999999999999999999999999 57
Q ss_pred CeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhc-cccCccccccccccee
Q psy1758 818 PYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERI-SSLIPIDILLSSFGII 896 (1527)
Q Consensus 818 ~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~-~~L~pie~~L~~lP~i 896 (1527)
|.++|+|+||+||||||||||||.+|||+|||++|||+++|+|++++|++++++.+....+.+ ..|+|++.++.++|.+
T Consensus 168 ~~~~~~v~cskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~~~~a~~l~~l~~~~~~~~~~~~l~p~~~~l~~lp~v 247 (305)
T PRK05389 168 DHAVFEVECGKGTYVRSLARDLGRALGCYGHIAALRRTRVGPFTEEDAITLEKLEALARFAALDALLLPVETALDDLPAL 247 (305)
T ss_pred CeEEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEEEeEEECCCcHHHccCHHHHHhcccccchhhhcCCHHHHHccCCEE
Confidence 999999999999999999999999999999999999999999999999999999764332222 3699999999999999
Q ss_pred eecccccceeccCccccc
Q psy1758 897 YLSDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 897 ~l~d~~~~~i~nG~~i~l 914 (1527)
.++++.+..+.||+.+..
T Consensus 248 ~l~~~~~~~l~~G~~i~~ 265 (305)
T PRK05389 248 ALTDEQAARLRQGNPVLL 265 (305)
T ss_pred EeCHHHHHHHHCcCcccc
Confidence 999999999999999865
|
|
| >PRK01528 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-70 Score=618.54 Aligned_cols=252 Identities=33% Similarity=0.479 Sum_probs=239.1
Q ss_pred eeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCC
Q psy1758 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 741 (1527)
Q Consensus 662 ~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d 741 (1527)
-||||+||||.||||||||+++||+|+.+|+||+|||||+||||||||+|+|||+++|+++.+|+|+++++||.+|||+|
T Consensus 2 ~~GiL~i~KP~G~TS~dvv~~vrk~~~~kKvGH~GTLDP~AtGvL~v~vG~aTKl~~~l~~~~K~Y~~~~~lG~~TdT~D 81 (292)
T PRK01528 2 SNYWLNIYKPRGISSAKLVSIVKKILGKVKIGHAGTLDVEAEGVLPLAVGEATKLVQLLIDAKKTYIFTVKFGKQTDSGD 81 (292)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHcCCCccCcCccCCCcCceEEEEEEChHhhhhHHHhcCCceEEEEEEECCcccCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC--Ce
Q psy1758 742 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI--PY 819 (1527)
Q Consensus 742 ~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~--~~ 819 (1527)
++|+|++++++. ++.++++++|++|+|+++|+||+|||+|+||+|||+|||+|++|++++|+|+||++++++|+. |.
T Consensus 82 ~~G~v~~~~~~~-~~~e~l~~~l~~f~G~i~Q~PP~ySAvKv~G~raYelAR~G~~vel~~r~v~I~~i~ll~~~~~~~~ 160 (292)
T PRK01528 82 YAGKVIATKDYI-PSKEEAYAVCSKFIGNITQIPPAFSALKVNGVRAYKLAREGKEVELKPRNITIYDLKCLNFDEKNAT 160 (292)
T ss_pred CCCCEEEecCCC-CCHHHHHHHHHhccceEEeeCChhHeEEECCHhHHHHHhCCcccccCceeEEEEEEEEEEEcCCCcE
Confidence 999999998876 599999999999999999999999999999999999999999999999999999999999986 68
Q ss_pred EEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccccceeeec
Q psy1758 820 LTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLS 899 (1527)
Q Consensus 820 ~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~lP~i~l~ 899 (1527)
+.|+|+||+||||||||||||.+|||+|||+.|||+++|+|++++|++++++.+.......+.|+|++.++.++|.+.++
T Consensus 161 ~~~~v~cskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~~~~a~~l~~l~~~~~~~l~~~llp~~~~l~~lp~i~l~ 240 (292)
T PRK01528 161 ATYYTECSKGTYIRTLAEDLALSLQSLGFVIELRRTQVGIFKEENAIRIKSSDAITKNSLEEKSIKIEAILDDILVLDAT 240 (292)
T ss_pred EEEEEEECCCccHHHHHHHHHHHHCCceEEeEEEeEEECCccHHHcCCHHHHHhhhhhhhhhccCCHHHHHhhCCeEEeC
Confidence 99999999999999999999999999999999999999999999999999997543221123699999999999999999
Q ss_pred ccccceeccCccccc
Q psy1758 900 DLLSKRFLHGQNLFL 914 (1527)
Q Consensus 900 d~~~~~i~nG~~i~l 914 (1527)
++....+.||+.+..
T Consensus 241 ~~~~~~~~~G~~i~~ 255 (292)
T PRK01528 241 DEQAQKIKYGQKCLF 255 (292)
T ss_pred HHHHHHHHCcCcccc
Confidence 999999999998854
|
|
| >PRK14123 tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-70 Score=623.76 Aligned_cols=254 Identities=37% Similarity=0.615 Sum_probs=239.2
Q ss_pred ceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCC
Q psy1758 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 740 (1527)
Q Consensus 661 ~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~ 740 (1527)
+|||||+||||.||||||||+++||+|+.+|+||+|||||+||||||+|+|+|||+++|++..+|+|+++++||.+|||+
T Consensus 1 ~m~Gil~i~KP~G~TS~dvv~~vrr~~~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~l~~~~K~Y~~~~~lG~~TdT~ 80 (305)
T PRK14123 1 MYNGILPVYKERGLTSHDVVFKLRKILKTKKIGHTGTLDPEVAGVLPVCIGNATRVSDYVMDMGKAYEATVSIGRSTTTE 80 (305)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHhCCCccccCcCCCCcCeeEEEEEEChhhhhHHHhcCCCcEEEEEEEECCcccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEeecCCC--CCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEE---E
Q psy1758 741 DIEGKIIDFNKNI--PNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIID---Y 815 (1527)
Q Consensus 741 d~~g~v~~~~~~~--~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~---~ 815 (1527)
|++|+|++++++. |++.++++++|++|+|+++|+||+|||+|+||||||+|||+|++||+++|+|+||+|++++ |
T Consensus 81 D~~G~vi~~~~~~~~~~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~~~~~~~~ 160 (305)
T PRK14123 81 DQTGDTLETKGVHSADFNKDDIDRLLEQFKGIIEQIPPMYSSVKVNGKKLYEYARNNETVERPKRKVNIKDIGRISELDF 160 (305)
T ss_pred CCCCCEEEeccCCcCCCCHHHHHHHHHhccCceeecCChhheEeeCCHhHHHHHhCCCcccCCceEEEEEEEEEeecccc
Confidence 9999999998874 6899999999999999999999999999999999999999999999999999999999884 6
Q ss_pred eC--CeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhc-cccCcccccccc
Q psy1758 816 TI--PYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERI-SSLIPIDILLSS 892 (1527)
Q Consensus 816 ~~--~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~-~~L~pie~~L~~ 892 (1527)
+. |.|+|+|+||+||||||||||||.+|||+|||++|||+++|+|++++|++++++.+....+.+ +.|+|++.++.+
T Consensus 161 ~~~~~~~~~~v~cskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~l~~a~~l~~l~~~~~~~~l~~~l~p~~~~l~~ 240 (305)
T PRK14123 161 KENECHFKIRVICGKGTYIRTLATDIGVKLGFPAHMSKLTRIESGGFVLKDSLTLEQIKELHEQDSLQNKLFPLEYGLKG 240 (305)
T ss_pred cCCCceEEEEEEeCCCcCHHHHHHHHHHHHCCCEEEEEEEeEEECCCchHHcCCHHHHHhhhcccchhhccCCHHHHHhh
Confidence 54 799999999999999999999999999999999999999999999999999999764322223 469999999999
Q ss_pred cceeeecccc-cceeccCccccc
Q psy1758 893 FGIIYLSDLL-SKRFLHGQNLFL 914 (1527)
Q Consensus 893 lP~i~l~d~~-~~~i~nG~~i~l 914 (1527)
+|.+.++++. ...+.||+.+..
T Consensus 241 lp~v~l~~~~~~~~i~~G~~i~~ 263 (305)
T PRK14123 241 LPSIKIKDSHIKKRILNGQKFNK 263 (305)
T ss_pred CCEEEECHHHHHHHHHCcCcccc
Confidence 9999999985 689999998854
|
|
| >PRK14124 tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-70 Score=622.37 Aligned_cols=249 Identities=36% Similarity=0.601 Sum_probs=239.7
Q ss_pred ceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCC
Q psy1758 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 740 (1527)
Q Consensus 661 ~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~ 740 (1527)
+|||||+||||+|||||||++|+||+|+.+|+||+|||||+||||||+|+|+|||+++|++..+|+|+++++||.+|||+
T Consensus 1 ~m~Gil~i~KP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~l~~~~K~Y~a~~~lG~~TdT~ 80 (308)
T PRK14124 1 MKHGFLVAYKPKGPTSHDVVDEVRKKLKTRKVGHAGTLDPFATGVLIVGVNKATRLLEYLKNEKKVYYVKMRLGLITETF 80 (308)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCCccCcCcCCCCCCcEEEEEEEChHHhhhHHHhcCCceEEEEEEeCccccCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeE
Q psy1758 741 DIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYL 820 (1527)
Q Consensus 741 d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~ 820 (1527)
|++|+|++++++ +++.++++++|++|+|+++|+||+|||+|+||+|||+|||+|++||+++|+|+||+|++++|+.|.+
T Consensus 81 D~~G~vi~~~~~-~~~~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~~~~ 159 (308)
T PRK14124 81 DITGEVVEEREC-NVTEEEIREAIFSFVGEYKQVPPAYSAKKYKGERLYKLAREGKIINLPPKEVKIYEIWDISIEGPDV 159 (308)
T ss_pred CCCCCEEEecCC-CCCHHHHHHHHHhCcCeEEEeCCchHeEEECChhHHHHHhCCCccccCceeeEEEEEEEEEEeCCeE
Confidence 999999999887 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccccceeeecc
Q psy1758 821 TLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLSD 900 (1527)
Q Consensus 821 ~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~lP~i~l~d 900 (1527)
+|+|+||+||||||||||||.+|||+|||++|||+++|+|++++|++++++... .....++|++.++. +|.+.+++
T Consensus 160 ~~~v~cskGTYIRsL~~DiG~~Lg~~a~m~~LrRt~~G~f~l~~a~~l~~l~~~---~~~~~llp~~~~l~-lp~v~l~~ 235 (308)
T PRK14124 160 SFRVEVSPGTYIRSLCMDIGYKLGCGATAVELVRLSVGKFSIEDSINVFEVSPE---EIENRIIPMEEILD-LPKVVIHQ 235 (308)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHccCHHHhhhh---hhhhhcCCHHHHhC-CceEEeCH
Confidence 999999999999999999999999999999999999999999999999998542 22356999999998 99999999
Q ss_pred cccceeccCccccc
Q psy1758 901 LLSKRFLHGQNLFL 914 (1527)
Q Consensus 901 ~~~~~i~nG~~i~l 914 (1527)
+....+.||+.+..
T Consensus 236 ~~~~~i~~G~~i~~ 249 (308)
T PRK14124 236 ESTEKILNGSQIYL 249 (308)
T ss_pred HHHHHHHCCCcccc
Confidence 99999999998865
|
|
| >PRK14846 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-70 Score=614.95 Aligned_cols=253 Identities=32% Similarity=0.480 Sum_probs=240.2
Q ss_pred eeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCC
Q psy1758 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 741 (1527)
Q Consensus 662 ~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d 741 (1527)
-||||+||||.||||||||+++||+++.+||||+|||||+||||||||+|+|||+++|++..+|+|+++++||.+|||+|
T Consensus 2 ~nGiL~idKP~G~TS~dvv~~vrk~l~~kKVGH~GTLDP~AtGVL~i~vG~aTKl~~~l~~~~K~Y~a~~~lG~~TDT~D 81 (345)
T PRK14846 2 SNYWLNIYKPRGISSAQLVSIVKKILGKTKIGHAGTLDVEAEGILPFAVGEATKLIHLLIDARKTYIFTVKFGMQTNSGD 81 (345)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCCCcCCcCccCCCcCceEEEEEEChhhhhhHHHhcCCceEEEEEEECCccCCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC--Ce
Q psy1758 742 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI--PY 819 (1527)
Q Consensus 742 ~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~--~~ 819 (1527)
++|+|+++.+.. ++.++++++|++|+|+++|+||+|||+|+||+|||+|||+|++|++++|+|+||++++++|+. |.
T Consensus 82 ~eG~ii~~~~~~-~~~e~l~~~L~~f~G~i~Q~PP~ySAvKv~GkraYelARkG~~Vel~~R~V~I~~i~ll~f~~~~~~ 160 (345)
T PRK14846 82 CAGKVIATKDCI-PSQEEAYAVCSKFIGNVTQIPPAFSALKVNGVRAYKLAREGKKVELKPRNITIYDLKCLNFDEKNAT 160 (345)
T ss_pred CCCCEEEecCCC-CCHHHHHHHHHhCcceEEeeCChhheEeECChhHHHHHhCCCccccCceeEEEEEEEEEEEcCCCcE
Confidence 999999988765 689999999999999999999999999999999999999999999999999999999999976 67
Q ss_pred EEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccccceeeec
Q psy1758 820 LTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLS 899 (1527)
Q Consensus 820 ~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~lP~i~l~ 899 (1527)
+.|+|+||+||||||||||||.+|||+|||+.|||+++|+|++++|++++++.+.......+.|+|++.++.++|.+.++
T Consensus 161 ~~~~v~CSkGTYIRSLa~DIG~~Lg~~A~l~~LrRtr~G~F~l~~ai~le~L~~~~~~~l~~~llpie~~l~~lp~v~l~ 240 (345)
T PRK14846 161 ATYYTECSKGTYIRTLAEDLALSLQSLGFVIELRRTQVGIFKEENAIRIKSPDEITKNALEEKSIKIEAILDDILVLDAT 240 (345)
T ss_pred EEEEEEECCCCcHHHHHHHHHHHHCCCEEEeEEEeEEECCCcHHHcCCHHHHHhhhhcchhhccCCHHHHHhhCCeEEeC
Confidence 99999999999999999999999999999999999999999999999999997653321223699999999999999999
Q ss_pred ccccceeccCcccccc
Q psy1758 900 DLLSKRFLHGQNLFLS 915 (1527)
Q Consensus 900 d~~~~~i~nG~~i~ls 915 (1527)
++....+.||+++..+
T Consensus 241 ~~~~~~i~nG~~i~~~ 256 (345)
T PRK14846 241 DSQAQQIKYGQKCLFN 256 (345)
T ss_pred HHHHHHHHCcCEEeec
Confidence 9999999999999876
|
|
| >PRK03287 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-70 Score=614.75 Aligned_cols=249 Identities=32% Similarity=0.503 Sum_probs=239.0
Q ss_pred ceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCC
Q psy1758 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 740 (1527)
Q Consensus 661 ~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~ 740 (1527)
.+||||+||||.||||||||+++||+|+.+|+||+|||||+||||||+|+|+|||+++|+++.+|+|+++++||.+|||+
T Consensus 7 ~~~Gil~i~KP~G~TS~dvv~~vrr~~~~kKvGH~GTLDP~AtGvL~i~vG~aTKl~~~l~~~~K~Y~a~~~lG~~TdT~ 86 (298)
T PRK03287 7 TGSGLVVVDKPAGMTSHDVVARCRRLFGTRKVGHAGTLDPMATGVLVLGVERATKLLGHLTLTDKSYTATIRLGQATTTD 86 (298)
T ss_pred CcCeEEEEeCCCCCCHHHHHHHHHHHhCCCCCCcCccCCCcceeEEEEEeChhhhhhHHHhcCCcEEEEEEEeCccccCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC---
Q psy1758 741 DIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI--- 817 (1527)
Q Consensus 741 d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~--- 817 (1527)
|++|+|++++++.++|.+++++++++|+|+++|+||+|||+|+||||||+|||+|++|++++|+|+||++++++|+.
T Consensus 87 D~~G~v~~~~~~~~it~~~i~~~l~~f~G~i~Q~PP~ySAvKv~Gkr~YelAR~G~~ve~~~R~v~I~~~~l~~~~~~~~ 166 (298)
T PRK03287 87 DAEGEVLASADASAVTDEAIAAAVAALTGEIMQVPSAVSAIKVDGKRAYARVRAGEEVELPARPVTVSRFEVLAVRRDGD 166 (298)
T ss_pred CCCCCEEeecCCCCCCHHHHHHHHHhCcCeEEEeCChhHeEEECCHHHHHHHhCCCccccCcEEEEeeeeEEEEEecCCC
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999965
Q ss_pred -CeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccc-cccccce
Q psy1758 818 -PYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDI-LLSSFGI 895 (1527)
Q Consensus 818 -~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~-~L~~lP~ 895 (1527)
+.++|+|+|||||||||||||||.+|||+|||++|||+++|+|++++|++++++.+.. ..++|++. ++.++|.
T Consensus 167 ~~~~~~~v~cskGTYIRSL~~Dig~~Lg~~a~~~~LrRt~~G~f~l~~a~~l~~l~~~~-----~~l~p~~~~~l~~lp~ 241 (298)
T PRK03287 167 FIDLDVEVDCSSGTYIRALARDLGAALGVGGHLTALRRTRVGPFTLDQARTLDELAEEP-----ALSLSLDEAAARSFPR 241 (298)
T ss_pred ccEEEEEEEECCCcCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHccCHHHHHhhh-----hhcCCHHHHHHccCCe
Confidence 3789999999999999999999999999999999999999999999999999996532 26899987 7889999
Q ss_pred eeecccccceeccCccccc
Q psy1758 896 IYLSDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 896 i~l~d~~~~~i~nG~~i~l 914 (1527)
+.++++....+.||+.+..
T Consensus 242 v~l~~~~~~~i~~G~~i~~ 260 (298)
T PRK03287 242 RDLTAAEAEALSHGRRLEP 260 (298)
T ss_pred EEeCHHHHHHHHCcCcccc
Confidence 9999999999999998864
|
|
| >cd02573 PseudoU_synth_EcTruB PseudoU_synth_EcTruB: Pseudouridine synthase, Escherichia coli TruB like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-69 Score=611.91 Aligned_cols=252 Identities=45% Similarity=0.736 Sum_probs=241.6
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCCCc
Q psy1758 664 GVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIE 743 (1527)
Q Consensus 664 G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d~~ 743 (1527)
|||+||||+||||||||+++||+|+.+|+||+|||||+||||||+|+|+|||+++|++..+|+|+++++||.+|||+|++
T Consensus 1 Gil~i~KP~G~tS~~vv~~vr~~~~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~l~~~~K~Y~~~~~~G~~TdT~D~~ 80 (277)
T cd02573 1 GILLLDKPAGLTSHDVVQKVRRLLGTKKVGHTGTLDPLATGVLPIALGEATKLSQYLLDADKTYRATVRLGEATDTDDAE 80 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCcCccCCCCCCCCcCeEEEEEEEChHHhhHHHhcCCCcEEEEEEEECCcccCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC--CeEE
Q psy1758 744 GKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI--PYLT 821 (1527)
Q Consensus 744 g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~--~~~~ 821 (1527)
|+|++++++.+++.++++++|++|+|+++|+||+|||+|+||+|||+|||+|++|++++|+++||++++++|+. |.++
T Consensus 81 G~v~~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAvkv~G~raYelAR~G~~ve~~~r~v~I~~i~ll~~~~~~~~~~ 160 (277)
T cd02573 81 GEIIETSPPPRLTEEEIEAALKAFTGEIEQVPPMYSAVKVNGKRLYELARAGEEVERPPRKVTIYSLELLSFDPENPEAD 160 (277)
T ss_pred CCEEEecCCCCCCHHHHHHHHHHccCcEEeeCChhHeEeeCCccHHHHHhCCCccccCCeeEEEEEEEEEEecCCCCeEE
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999988 9999
Q ss_pred EEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccccceeeeccc
Q psy1758 822 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLSDL 901 (1527)
Q Consensus 822 ~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~lP~i~l~d~ 901 (1527)
|+|+||+||||||||||||.+|||+|||++|||+++|+|++++|++++++.+.........++|++.++.++|.+.++++
T Consensus 161 ~~v~cs~GTYIRsL~~Dig~~Lg~~a~~~~L~Rt~~G~f~~~~a~~l~~l~~~~~~~l~~~l~p~~~~l~~~p~v~l~~~ 240 (277)
T cd02573 161 FEVECSKGTYIRSLARDLGKALGCGAHLSALRRTRSGPFTLEDAITLEELEALPEEGLDELLLPIDAALSHLPKVELDEE 240 (277)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCeEEEEEEEEEECCccHHHccCHHHHHhhhhcccccccCCHHHHHhhCCEEEeCHH
Confidence 99999999999999999999999999999999999999999999999999765332222369999999999999999999
Q ss_pred ccceeccCcccccc
Q psy1758 902 LSKRFLHGQNLFLS 915 (1527)
Q Consensus 902 ~~~~i~nG~~i~ls 915 (1527)
..+.+.||+.+...
T Consensus 241 ~~~~i~~G~~i~~~ 254 (277)
T cd02573 241 EAKRLRNGQKISLP 254 (277)
T ss_pred HHHHHHCcCccccC
Confidence 99999999999653
|
This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruB and M. tuberculosis TruB make psi55 in the T loop of tRNAs. Psi55 is nearly universally conserved. E. coli TruB is not inhibited by RNA containing 5-fluorouridine. |
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-67 Score=680.19 Aligned_cols=463 Identities=31% Similarity=0.499 Sum_probs=399.5
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEE----EEecCeEEEEEeCC
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCS----IEYNGTRINIIDTP 993 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~----~~~~~~~iniiDTP 993 (1527)
+.+.+|||+|+||+|||||||+++|++.+|.+.+......+++|+.+.|++||+|+.+...+ ++|+++++||||||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP 94 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP 94 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence 34678999999999999999999999999988775444457899999999999999987665 67789999999999
Q ss_pred CCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhc----
Q psy1758 994 GHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC---- 1069 (1527)
Q Consensus 994 Gh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~---- 1069 (1527)
||.+|..++.++++.+|++|+|+|+.+|+..||+.+|+.+...++|+++|+||+|+..+++....+++++.|...-
T Consensus 95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~ 174 (720)
T TIGR00490 95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITEVN 174 (720)
T ss_pred CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998888777777777664310
Q ss_pred ----c--cc--------cccCCcEEEeccccCCcCC---------Cccc--------ccCC-------ChhHHHHHHhhc
Q psy1758 1070 ----A--TE--------EQLDFPVIYTSALHGYANE---------NSKA--------RQGN-------MIPLFEAILKYV 1111 (1527)
Q Consensus 1070 ----~--~~--------~~~~~pvi~~SA~~g~~~~---------~~~~--------~~~g-------i~~Ll~~i~~~l 1111 (1527)
. .+ ...+.++.++|++.+|+.. +.++ ...+ +++||++|++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~~~Lld~i~~~l 254 (720)
T TIGR00490 175 KLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDMVIRHL 254 (720)
T ss_pred hhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHhC
Confidence 0 00 0012234566777775320 0000 0112 467899999999
Q ss_pred CCCCC-------------------------CCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCc
Q psy1758 1112 PVHKD-------------------------NSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNK 1166 (1527)
Q Consensus 1112 p~p~~-------------------------~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~ 1166 (1527)
|+|.. ++++||.++|||+.++++.|+++++||+||+|++||.|++.++ ...
T Consensus 255 PsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~----~~~ 330 (720)
T TIGR00490 255 PSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDR----KAK 330 (720)
T ss_pred CChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCC----CCe
Confidence 99941 3367999999999999999999999999999999999999866 245
Q ss_pred ceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCC-CCCCCC-ccCCCceeEEEEecCCCCCCCCCccc
Q psy1758 1167 AKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKP-NGLPML-NIDEPTLTINFMVNNSPLAGREGKFI 1244 (1527)
Q Consensus 1167 ~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~-~~l~~~-~~~~P~l~~~~~~~~~p~~g~e~~~~ 1244 (1527)
.+|.+|+.++|.+..++++|.|||||+++|++++.+|||||+++.+ .+++++ .+++|++++++.|.+..
T Consensus 331 ~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~--------- 401 (720)
T TIGR00490 331 ARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDAVAGETICTTVENITPFESIKHISEPVVTVAIEAKNTK--------- 401 (720)
T ss_pred eEeeEEEEeccCCccCccEECCCCEEEEECccccccCceeecCCcccccCcccccCCCceEEEEEEECCHH---------
Confidence 8999999999999999999999999999999999999999987644 345655 47899999999986531
Q ss_pred cHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhc-CcEEEEecCeeeEEEe------------
Q psy1758 1245 TTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFKTL------------ 1311 (1527)
Q Consensus 1245 ~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs~P~V~yre~------------ 1311 (1527)
+..+|.++|.++.++||+|+|+.++++++ ++++|+|||||+|++++|+++ |+|+.+++|+|+|||+
T Consensus 402 d~~kL~~aL~~L~~eDPsl~v~~d~etge-~il~g~GElHLei~~~rL~~~~~vev~~~~P~V~YrETi~~~~~~~~~~~ 480 (720)
T TIGR00490 402 DLPKLIEVLRQVAKEDPTVHVEINEETGE-HLISGMGELHLEIIVEKIREDYGLDVETSPPIVVYRETVTGTSPVVEGKS 480 (720)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEECCCCCC-eEEEEccceeHHHHHHHHHHHhCCceeecCCEEEEEEeccccccceEEEc
Confidence 35799999999999999999999999999 999999999999999999875 9999999999999996
Q ss_pred ----------------c-----------------------------------------c---------------------
Q psy1758 1312 ----------------N-----------------------------------------G--------------------- 1313 (1527)
Q Consensus 1312 ----------------~-----------------------------------------g--------------------- 1313 (1527)
. +
T Consensus 481 ~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~gg~i~~~~~~av 560 (720)
T TIGR00490 481 PNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRLLIEAGMDSEEAARVEEYYEGNLFINMTRGIQYLDETKELI 560 (720)
T ss_pred CCCcEEEEEEEEECCcchhhhhhcccccccccchHHHHHHHHhcCCchhhhcCEEEecCCeEEEECCCCCCCHHHHHHHH
Confidence 1 1
Q ss_pred -----------------------------------------------------------eEeeeeEEEEEEecCcchHHH
Q psy1758 1314 -----------------------------------------------------------ELYEPYENLFVDIEEINQGII 1334 (1527)
Q Consensus 1314 -----------------------------------------------------------~llEP~~~~~i~vp~e~~G~v 1334 (1527)
++|||||+++|.+|++|+|+|
T Consensus 561 ~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~~ei~~p~~~~g~v 640 (720)
T TIGR00490 561 LEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGPAQVIPAVRSGIFAAMMQAKPVLLEPYQKVFINVPQDMMGAA 640 (720)
T ss_pred HHHHHHHHHcCCcCCCcccceEEEEEeeccccccccCccchHHHHHHHHHHHHHHhCCCeEecceEEEEEEccHHHHhHH
Confidence 599999999999999999999
Q ss_pred HHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1335 MQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1335 ~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|.+|++|||++++|+.. ++...|++.+|++|++||.++|+++|+|.|+|+++|+||++++
T Consensus 641 ~~~L~~RRg~i~~~~~~-~~~~~I~A~vP~~e~fgy~~~Lrs~T~G~a~~~~~f~~y~~vp 700 (720)
T TIGR00490 641 TREIQNRRGQILEMKQE-GDMVTIIAKAPVAEMFGFAGAIRGATSGRCLWSTEHAGFELVP 700 (720)
T ss_pred HHHHhhCCceeeeeccC-CCcEEEEEEEehHHhcCCcHHHHhhCCCCceEEEEecccccCC
Confidence 99999999999999864 4578999999999999999999999999999999999999997
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-67 Score=678.42 Aligned_cols=443 Identities=29% Similarity=0.477 Sum_probs=401.9
Q ss_pred EeecCCCCCcHHhHHhhccCcccccccccc--eecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHHHH
Q psy1758 928 IAHVDHGKTTLIDHLLRQSGTFRKNQNINA--RIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERI 1005 (1527)
Q Consensus 928 iGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~--~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~~~ 1005 (1527)
+||+|||||||+++|++.+|.+.+.+.++. +++|+.+.|++||+|+..+...+.|+++.++|||||||.+|..++.++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999999998877655543 799999999999999999999999999999999999999999999999
Q ss_pred HHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhc----------------
Q psy1758 1006 LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC---------------- 1069 (1527)
Q Consensus 1006 l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~---------------- 1069 (1527)
++.+|++++|+|++++...++..+|..+...++|.++|+||+|+..++..++++++.+.+....
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~~ 160 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTGV 160 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCceEE
Confidence 9999999999999999999999999999999999999999999998888778888877543100
Q ss_pred ------------------------------------------ccc---------------------------cccCCcEE
Q psy1758 1070 ------------------------------------------ATE---------------------------EQLDFPVI 1080 (1527)
Q Consensus 1070 ------------------------------------------~~~---------------------------~~~~~pvi 1080 (1527)
..+ ...-+|++
T Consensus 161 id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~Pv~ 240 (668)
T PRK12740 161 VDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIVPVF 240 (668)
T ss_pred EECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 000 00137899
Q ss_pred EeccccCCcCCCcccccCCChhHHHHHHhhcCCCC-----------------CCCCCCceeEEEeeeccccCceEEEEEe
Q psy1758 1081 YTSALHGYANENSKARQGNMIPLFEAILKYVPVHK-----------------DNSNNPLQLQIISLEYSSYLGKIGIGRI 1143 (1527)
Q Consensus 1081 ~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~-----------------~~~~~p~~~~V~~~~~d~~~G~v~~grV 1143 (1527)
++||++|. |+++||++|+.++|+|. +++++|+.++||++.++++.|+++++||
T Consensus 241 ~gSA~~~~----------Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV 310 (668)
T PRK12740 241 CGSALKNK----------GVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRV 310 (668)
T ss_pred eccccCCc----------cHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEE
Confidence 99999998 99999999999999995 2567899999999999999999999999
Q ss_pred ecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCCCCCCccCCC
Q psy1758 1144 LSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEP 1223 (1527)
Q Consensus 1144 ~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~~~~~P 1223 (1527)
++|+|++||+|++.++ ....+|.+|+.++|.++.++++|.||||++++|++++.+||||++...+.+++++++++|
T Consensus 311 ~sG~L~~g~~v~~~~~----~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~~~~~~~~P 386 (668)
T PRK12740 311 YSGTLKKGDTLYNSGT----GKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLCDKGDPILLEPMEFPEP 386 (668)
T ss_pred eeeEEcCCCEEEeCCC----CCcEEecceeeecCCCccccCccCCCCEEEEeccCccCCCCEEeCCCCccccCCCCCCCc
Confidence 9999999999998765 235789999999999999999999999999999999999999998877778888888999
Q ss_pred ceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhc-CcEEEEe
Q psy1758 1224 TLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVS 1302 (1527)
Q Consensus 1224 ~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs 1302 (1527)
++++.+.|++. . +..+|.++|.++.++||+|+|+.++++++ +.++|+|||||+|++++|+++ |+|+.++
T Consensus 387 ~~~~~i~p~~~----~-----d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge-~~l~g~GelhLei~~~~L~~~~~~~v~~~ 456 (668)
T PRK12740 387 VISLAIEPKDK----G-----DEEKLSEALGKLAEEDPTLRVERDEETGQ-TILSGMGELHLDVALERLKREYGVEVETG 456 (668)
T ss_pred ceEEEEEECCc----c-----hHHHHHHHHHHHHHhCCeEEEEECCCCCC-EEEEEecHHHHHHHHHHHHHHhCceeEec
Confidence 99999998753 1 35899999999999999999999989999 999999999999999999976 9999999
Q ss_pred cCeeeEEEe--c---------------------------------------------------------------c----
Q psy1758 1303 RPRVIFKTL--N---------------------------------------------------------------G---- 1313 (1527)
Q Consensus 1303 ~P~V~yre~--~---------------------------------------------------------------g---- 1313 (1527)
+|+|+|||+ . |
T Consensus 457 ~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~ep~~~~~~~~f~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g 536 (668)
T PRK12740 457 PPQVPYRETIRKKAEGHGRHKKQSGGHGQFGDVWLEVEPLPRGEGFEFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAG 536 (668)
T ss_pred CCeeEEeeccCCCccccceeccccCCCCceEEEEEEEEECCCCCceEEeecccCCCccHHHHHHHHHHHHHHHhcCCcCC
Confidence 999999994 0 2
Q ss_pred ------------------------------------------eEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeec
Q psy1758 1314 ------------------------------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEIN 1351 (1527)
Q Consensus 1314 ------------------------------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~ 1351 (1527)
.+||||++++|.+|++|+|.||++|++|||++++++..
T Consensus 537 ~p~~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~ 616 (668)
T PRK12740 537 YPVVDVKVTLTDGSYHSVDSSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESR 616 (668)
T ss_pred CceeeEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCCCeEeccccC
Confidence 48999999999999999999999999999999999876
Q ss_pred CCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1352 EKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1352 ~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
+++ ++|++.+|+++++||.++|+++|+|+|+|++.|+||+++.
T Consensus 617 ~~~-~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~~~ 659 (668)
T PRK12740 617 GGG-DVVRAEVPLAEMFGYATDLRSLTQGRGSFSMEFSHYEEVP 659 (668)
T ss_pred CCC-EEEEEEcCHHHhhchHHHHHHhcCCeEEEEEEecccccCC
Confidence 544 8999999999999999999999999999999999999997
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-66 Score=665.48 Aligned_cols=436 Identities=32% Similarity=0.462 Sum_probs=375.5
Q ss_pred hhHHHHHHHccccccccCCceeEEEEEEEEEeCCe------------------EEEEEeCCChhhHHHHHHhhccccCEE
Q psy1758 82 KTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG------------------SITFLDTPGHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 82 KTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~------------------~i~~iDTPG~e~f~~~~~~~~~~aD~~ 143 (1527)
||||+++|++.+++..+.+||||+++++.+.++.. .++|||||||+.|..++.++++.+|++
T Consensus 474 KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDiv 553 (1049)
T PRK14845 474 NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLA 553 (1049)
T ss_pred cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEE
Confidence 99999999999999999999999999998887531 289999999999999999999999999
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCc-chh--------------HHHHHH-----------Hhhhcc
Q psy1758 144 VLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLD-INL--------------DRIKQD-----------LISEQV 197 (1527)
Q Consensus 144 IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~-~~~--------------~~~~~~-----------l~~~~~ 197 (1527)
++|+|+++++.+|+.+++..+...++|+++|+||+|+.. ++. .+..++ +.+.+.
T Consensus 554 lLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~ 633 (1049)
T PRK14845 554 VLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGF 633 (1049)
T ss_pred EEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCc
Confidence 999999999999999999999999999999999999963 220 111111 122222
Q ss_pred cc------cccCCCCcEEEeeccCCCChhHHHHHHHHHHHH---HhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccE
Q psy1758 198 IP------EEYGGASPFISISAKTGVGINKLLENISLQAEI---LELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGT 268 (1527)
Q Consensus 198 ~~------~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~---~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~ 268 (1527)
.. ++|++.++++++||++|+||++|++.|..+++. ..++.+.+.|+++.|++++.++|.|++++++|++|+
T Consensus 634 ~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~vvt~iv~~G~ 713 (1049)
T PRK14845 634 DADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTTIDAIIYDGT 713 (1049)
T ss_pred chhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEecCceeEEEEEEEcCE
Confidence 22 356788999999999999999999998765542 235566778999999999999999999999999999
Q ss_pred EEeccEEEecce----eeeEeEeecc-----------CCceeeecCCCcceEec--CCCCCCCCCCeEEEeCChhHHHHH
Q psy1758 269 LRCSDIVVAGAS----YGRIRSMLNE-----------NGKNILEAGPSIPVEIQ--GLTKVPFSGEELFVILNEKKAREI 331 (1527)
Q Consensus 269 l~~gd~vv~g~~----~~kVr~i~~~-----------~g~~v~~a~~~~~v~I~--gl~~~~~~G~~~~~~~~e~~a~~~ 331 (1527)
|++||.|++|+. ++|||+|++. +++.++++.|+.+|.|. ||..+ .||+.|+++.+++++++.
T Consensus 714 Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~-~aG~~~~v~~~e~~~~~~ 792 (1049)
T PRK14845 714 LRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEV-LAGSPIRIVPTKEKIEKA 792 (1049)
T ss_pred EecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCcccc-CCCCeEEEeCCHHHHHHH
Confidence 999999999987 8999999853 24678999999999996 88887 999999999999988764
Q ss_pred HHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEeeccCcCChhhH
Q psy1758 332 GLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDI 411 (1527)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~~~vG~it~~Dv 411 (1527)
.+.... .+++.. -..+.+++|||||++||+|||.++|.++ +++|++++||+||++||
T Consensus 793 ~~~~~~-------------~~~~~~-----~~~~~~~vivKaDt~GSlEAl~~~L~~~-----~i~i~~~~vG~it~~DV 849 (1049)
T PRK14845 793 KEEVMK-------------EVEEAK-----IETDKEGILIKADTLGSLEALANELRKA-----GIPIKKAEVGDITKKDV 849 (1049)
T ss_pred HHHHHH-------------HHhhhc-----cCcceeeEEEEecccchHHHHHHHHHhC-----CCCEEEeeCCCCCHHHH
Confidence 211110 011110 1346799999999999999999999987 58999999999999999
Q ss_pred HHHHh------cCCEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHHHHHHHHHHhccCCcceee---eeeEeEEEe---
Q psy1758 412 NLAIA------SKAIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKE---NLLGLAEIR--- 479 (1527)
Q Consensus 412 ~~A~~------~~a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~l~~~~~e---~~~g~a~v~--- 479 (1527)
.+|++ ++|+||||||++++++++.|++.||+|++|||||||+|+++++|+++++|.+++ .++|+|+|+
T Consensus 850 ~~A~~~~~~~~~~a~Il~FnV~v~~~a~~~A~~~~V~I~~~~IIY~Lid~~~~~~~~~~~~~~~~~~~~~~~p~~v~ilp 929 (1049)
T PRK14845 850 IEALSYKQENPLYGVILGFNVKVLPEAQEEAEKYGVKIFVDNIIYKLVEDYTEWVKEEEEKKKRELFEKLIKPGIIRLLP 929 (1049)
T ss_pred HHHHhhhccCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhhhchhhhhhhhcccCceEEEecc
Confidence 99999 589999999999999999999999999999999999999999999999998654 689999999
Q ss_pred -EEEEcCCCCeEEEEEEeeeEEeeCCeEEEee-CCeEEEEEEeceecccccccceeecCccccccchhh
Q psy1758 480 -QVILVNKVSKIAGCYILEGLIRRDSKIRILR-NKNIIWTGELDSLKRFKDNVKEVKAGFECERLSRIE 546 (1527)
Q Consensus 480 -~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R-~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~r~~ 546 (1527)
++|+.++ +.||||+|++|++++|+ +|+| +|.++ |+|.||||+|++|+||++|+|||+.+..+
T Consensus 930 ~~vF~~~~-~~IaG~~V~~G~i~~~~--~l~r~~~~~i--G~i~Slk~~k~~V~ev~~G~ecgI~i~~~ 993 (1049)
T PRK14845 930 DCIFRRSN-PAIVGVEVLEGTLRVGV--TLIKEDGMKV--GTVRSIKDRGENVKEAKAGKAVAIAIEGA 993 (1049)
T ss_pred ceEEeCCC-CeEEEEEEeeCEEecCc--EEEecCCEEE--EEEchHhccCccccEeCCCCEEEEEEecc
Confidence 9999888 79999999999999997 5788 55544 99999999999999999999999999763
|
|
| >PRK00020 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-68 Score=583.08 Aligned_cols=215 Identities=46% Similarity=0.777 Sum_probs=209.8
Q ss_pred cceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccC
Q psy1758 660 NIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTET 739 (1527)
Q Consensus 660 ~~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt 739 (1527)
+.|||||+||||.|||||||++++||.++.+||||+|||||+||||||||+|++||+++|+++.+|+|+++++||.+|||
T Consensus 7 ~~~~Gil~vdKP~G~TS~dvv~~vkr~~~~kKvGH~GTLDP~AtGvLiv~iG~aTKl~~~l~~~~K~Y~a~~~lG~~TdT 86 (244)
T PRK00020 7 LALDGVLLLDKPVGLSSNHALQRAKRTVDAAKAGHTGTLDPFATGLLVCCMGRATKISGRMLEADKTYQATLQFGEETDS 86 (244)
T ss_pred CCCCeEEEEecCCCCCHHHHHHHHHHHhCCCCCCcCCcCCCcCeeEEEEEECHHhhhhHHhccCCcEEEEEEEeCCcccC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccEEeecCC--CCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC
Q psy1758 740 GDIEGKIIDFNKN--IPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI 817 (1527)
Q Consensus 740 ~d~~g~v~~~~~~--~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~ 817 (1527)
+|++|+|++++++ .|+|.++++++|++|+|+++|+||+|||+|+||+|||+|||+|++||+++|+|+||++++++|+.
T Consensus 87 ~D~~G~v~~~~~~~~~~it~e~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~ 166 (244)
T PRK00020 87 GDLTGHIVARAPDGFAGVEEAALRDVLSRFVGTIEQIPPMYSALKRDGKPLYEYARAGIELDRPPRQVTIRHIELLSFSG 166 (244)
T ss_pred CCCCCcEEEeccCccCCCCHHHHHHHHHhccCeEEEeCChhheEEECCeEHHHHHhCCcccccCCeeEEEEEEEEEEEeC
Confidence 9999999999874 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhh
Q psy1758 818 PYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKY 874 (1527)
Q Consensus 818 ~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~ 874 (1527)
|.++|+|+||+||||||||||||.+|||+|||++|||+++|+|++++|++++++..+
T Consensus 167 ~~~~~~v~cSkGTYIRSL~~DiG~~Lg~~a~l~~LrRt~~G~f~l~~a~~l~~l~~~ 223 (244)
T PRK00020 167 MQAQIDVACSKGTYIRTLAQDIGRALGCHAHLAALRRTHVGPFSLDRAVTLEALQAM 223 (244)
T ss_pred CEEEEEEEECCCcCHHHHHHHHHHHHCCCEEEEEEEeeEECCCChHHcCCHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999654
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-66 Score=676.55 Aligned_cols=467 Identities=26% Similarity=0.401 Sum_probs=393.1
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--------------
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-------------- 983 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-------------- 983 (1527)
+++++|||||+||+|||||||+++|++.+|.+.+......+++|+.+.|++||+|+.+...++.|.
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 467899999999999999999999999999888765555678999999999999999999999984
Q ss_pred --CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCC-------C---
Q psy1758 984 --GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS-------N--- 1051 (1527)
Q Consensus 984 --~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~-------~--- 1051 (1527)
++.+||||||||.||.+++.++++.+|++|+||||.+|++.||+.+|+.+.+.++|+|+|+||||++ .
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~~~ 174 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 174 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999998 3
Q ss_pred -CChhhhHHHHHHHHhhhccc---cc---ccCCcEEEeccccCCcC----------------------------------
Q psy1758 1052 -ARPEWVVDATFDLFDKLCAT---EE---QLDFPVIYTSALHGYAN---------------------------------- 1090 (1527)
Q Consensus 1052 -a~~~~v~~~~~~~~~~l~~~---~~---~~~~pvi~~SA~~g~~~---------------------------------- 1090 (1527)
+++..++++++..+...... .. +..--++++|+..||+.
T Consensus 175 ~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~~ 254 (843)
T PLN00116 175 YQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 254 (843)
T ss_pred HHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCCC
Confidence 56777888887332222110 00 00111344444333210
Q ss_pred -----CC----------------c------------cc------cc--------------------------CCChhHHH
Q psy1758 1091 -----EN----------------S------------KA------RQ--------------------------GNMIPLFE 1105 (1527)
Q Consensus 1091 -----~~----------------~------------~~------~~--------------------------~gi~~Ll~ 1105 (1527)
.+ . ++ .. .|.+.||+
T Consensus 255 ~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~~s~~Lld 334 (843)
T PLN00116 255 KKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLPASDALLE 334 (843)
T ss_pred ceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcCChHHHHH
Confidence 00 0 00 00 13378999
Q ss_pred HHHhhcCCCCC-------------------------CCCCCceeEEEeeeccccCce-EEEEEeecCccccCCEEEEecC
Q psy1758 1106 AILKYVPVHKD-------------------------NSNNPLQLQIISLEYSSYLGK-IGIGRILSGRIKSLQDVVIMNG 1159 (1527)
Q Consensus 1106 ~i~~~lp~p~~-------------------------~~~~p~~~~V~~~~~d~~~G~-v~~grV~sG~lk~Gd~v~~~~~ 1159 (1527)
.+++++|+|.. ++++|+.++|||+.++++.|+ ++|+|||||+|+.||.|++++.
T Consensus 335 ~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~~~ 414 (843)
T PLN00116 335 MIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIMGP 414 (843)
T ss_pred HHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEeCC
Confidence 99999999941 235799999999999999898 9999999999999999987644
Q ss_pred CC--CCc---CcceeeeEEEeecCceeEeeeeecCCEEEEecceeccc-CCeeeCCC--CCCCCCCCccC-CCceeEEEE
Q psy1758 1160 PD--DKP---NKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICI-GSTICDPS--KPNGLPMLNID-EPTLTINFM 1230 (1527)
Q Consensus 1160 ~~--g~~---~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~i-GdTi~~~~--~~~~l~~~~~~-~P~l~~~~~ 1230 (1527)
+. ++. +.++|.+|+.++|.++.++++|.|||||++.|+++..+ |||||+.. .+.+++++.++ +|++++++.
T Consensus 415 n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~~~~~~~Pv~~~aIe 494 (843)
T PLN00116 415 NYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKAMKFSVSPVVRVAVQ 494 (843)
T ss_pred CCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCccccccccCCCceEEEEEE
Confidence 21 111 11588999999999999999999999999999988655 99999876 56677888888 999999999
Q ss_pred ecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHH-hc--CcEEEEecCeee
Q psy1758 1231 VNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMR-RE--GYELSVSRPRVI 1307 (1527)
Q Consensus 1231 ~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lr-re--g~ev~vs~P~V~ 1307 (1527)
|.+. . +.++|.++|.++.++||+|++.. +++|| ++++|||||||+|++++|+ ++ |+|+.+++|+|+
T Consensus 495 P~~~----~-----d~~kL~~aL~~L~~eDPsl~v~~-~etge-~il~g~GElHLEi~~~rL~~~f~~~vev~~s~p~V~ 563 (843)
T PLN00116 495 CKNA----S-----DLPKLVEGLKRLAKSDPMVQCTI-EESGE-HIIAGAGELHLEICLKDLQDDFMGGAEIKVSDPVVS 563 (843)
T ss_pred ECCh----h-----hHHHHHHHHHHHHHhCCCeEEEE-cCCCC-EEEEEccHHHHHHHHHHHHHHhhCCCcEEEcCCeEE
Confidence 8653 1 35799999999999999999965 78999 9999999999999999998 47 999999999999
Q ss_pred EEEe-----------------------------c---------------------------------------------c
Q psy1758 1308 FKTL-----------------------------N---------------------------------------------G 1313 (1527)
Q Consensus 1308 yre~-----------------------------~---------------------------------------------g 1313 (1527)
|||+ + |
T Consensus 564 yrETI~~~~~~~~~~~~~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~gp~~~~ 643 (843)
T PLN00116 564 FRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGPETTG 643 (843)
T ss_pred EEecccccccCcEEEecCCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeeecCCCCC
Confidence 9985 2 0
Q ss_pred --------------------------------------------------------------------------------
Q psy1758 1314 -------------------------------------------------------------------------------- 1313 (1527)
Q Consensus 1314 -------------------------------------------------------------------------------- 1313 (1527)
T Consensus 644 ~~~~~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~Al~~a~p 723 (843)
T PLN00116 644 PNMVVDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYASQLTAKP 723 (843)
T ss_pred ceEEEECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHHHHhCCC
Confidence
Q ss_pred eEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCC-cEEEEEEEechhhhcChHHHHccccceeEEEEeEeccee
Q psy1758 1314 ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEK-ERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYA 1392 (1527)
Q Consensus 1314 ~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~-~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~ 1392 (1527)
.+||||++++|.+|++|+|+||++|++|||.+++++..++ +..+|++.+|++|++||.++|+++|+|+|+|+++|+||+
T Consensus 724 ~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~~f~~y~ 803 (843)
T PLN00116 724 RLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWD 803 (843)
T ss_pred EEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEEEeceeE
Confidence 4899999999999999999999999999999999988544 347899999999999999999999999999999999999
Q ss_pred ecc
Q psy1758 1393 PFY 1395 (1527)
Q Consensus 1393 ~~~ 1395 (1527)
+++
T Consensus 804 ~v~ 806 (843)
T PLN00116 804 MMS 806 (843)
T ss_pred ECC
Confidence 998
|
|
| >PRK14122 tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-68 Score=604.12 Aligned_cols=242 Identities=33% Similarity=0.523 Sum_probs=233.4
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCCCcc
Q psy1758 665 VLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEG 744 (1527)
Q Consensus 665 ~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d~~g 744 (1527)
||+||||.||||||||+++||+++.+|+||+|||||+||||||||+|+|||+++|++..+|+|+++++||.+|||+|++|
T Consensus 3 il~idKP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~aTKl~~~l~~~~K~Y~a~~~lG~~TdT~D~eG 82 (312)
T PRK14122 3 VYAVDKPLGLTSHDVVNRARRALGTRRVGHTGTLDPLATGVLVLCTDDSTKLVPFLSAEDKEYLAWVSFGATTPTLDAEG 82 (312)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcCeeeEEEEEChhhhhhHHhcCCCceEEEEEEECCcCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC-------
Q psy1758 745 KIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI------- 817 (1527)
Q Consensus 745 ~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~------- 817 (1527)
+|++++++.|++.++|+++|++|+|+++|+||+|||+|+||||||+|||+|++|++++|+|+||++++++|+.
T Consensus 83 ~i~~~~~~~~~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~vel~~R~v~I~~i~ll~~~~~~~~~~~ 162 (312)
T PRK14122 83 PISEEAPVSPLDEKDLEAALPGFLGLTEQVPPQYSAIKVGGVRAYEAARAGGALELPARPVVYHELELLAFEPSVAPIPR 162 (312)
T ss_pred CEEEecCCCCCCHHHHHHHHHhCcCeEEEeCChHHeEEECCeEHHHHHhCCCccccCCeeEEEEEEEEEEeccccccccc
Confidence 9999999989999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ---------------------------CeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhH
Q psy1758 818 ---------------------------PYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDT 870 (1527)
Q Consensus 818 ---------------------------~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~ 870 (1527)
|.+.|+++||+||||||||||||.+|||+|||++|||+++|+|+++||+++++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~cSkGTYIRSLa~DiG~~Lg~~a~m~~LrRt~~G~f~l~~a~~l~~ 242 (312)
T PRK14122 163 PIAPSAEGWTPDPRGRPVTLPEPLGEYPTALLRLVVGSGTYVRSFARDLGAALGVPAHLSGLVRTRVGRYGLEDAVSLED 242 (312)
T ss_pred ccccccccccccccccccccccccccCceEEEEEEeCCCcCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHcCCHHH
Confidence 67999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhccccCcccccccccceeeecccccceeccCccccc
Q psy1758 871 IIKYSEYERISSLIPIDILLSSFGIIYLSDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 871 l~~~~~~~~~~~L~pie~~L~~lP~i~l~d~~~~~i~nG~~i~l 914 (1527)
+.+. .++|++.++ ++|.+.++++....+.||+.+..
T Consensus 243 l~~~-------~~~p~~~~l-~lp~v~l~~~~~~~i~~G~~i~~ 278 (312)
T PRK14122 243 LAEA-------PGIPELDAL-DFPRVELSHAEARRVRQGKPPAI 278 (312)
T ss_pred Hhhh-------hcCCHHHHc-CCCeEEcCHHHHHHHHCcCcccC
Confidence 9542 368888887 89999999999999999998854
|
|
| >TIGR00431 TruB tRNA pseudouridine 55 synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-68 Score=571.40 Aligned_cols=209 Identities=51% Similarity=0.868 Sum_probs=204.9
Q ss_pred eeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCC
Q psy1758 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 741 (1527)
Q Consensus 662 ~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d 741 (1527)
|||||+||||.|||||||++++||.|+.+||||+|||||+||||||+|+|+|||+++|++..+|+|+++++||.+|||+|
T Consensus 1 ~~G~l~v~KP~g~tS~~vv~~vkk~~~~kKvGH~GTLDP~AsGvLiv~vG~~Tkl~~~~~~~~K~Y~~~~~~G~~TdT~D 80 (209)
T TIGR00431 1 INGVLLLDKPQGMTSFDALAKVRRLLNVKKVGHTGTLDPFATGVLPILVGKATKLSPYLTDLDKEYRAEIRLGVRTDTLD 80 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCcCceEEEEEEChHhhhhHHHcCCCCeEEEEEEECCcCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeEE
Q psy1758 742 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLT 821 (1527)
Q Consensus 742 ~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~~ 821 (1527)
++|+|++++++. ++.++|++++++|+|+++|+||+|||+|+||+|||+|||+|+++|+++|+++||++++++|+.|.++
T Consensus 81 ~~G~i~~~~~~~-~~~~~l~~~l~~f~G~~~Q~PP~ySA~Kv~G~raYelAR~g~~v~~~~r~v~I~~i~ll~~~~~~~~ 159 (209)
T TIGR00431 81 PDGQIVETRPVN-PTTEDVEAALPTFRGEIEQIPPMYSALKVNGKRLYEYARQGIEVERKARPVTVYDLQFLKYEGPELT 159 (209)
T ss_pred CCCCEEEecCCC-CCHHHHHHHHHHccCcEEEECChhhEEeeCCHhHHHHHHCCCccccCcceeEEEEEEEEEEcCCcEE
Confidence 999999998876 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHH
Q psy1758 822 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTI 871 (1527)
Q Consensus 822 ~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l 871 (1527)
|+|+||+||||||||||||.+|||+|||++|||+++|+|++++|++++++
T Consensus 160 ~~v~cs~GTYIRsL~~Dig~~L~~~a~l~~L~Rt~~G~f~~~~a~~l~~l 209 (209)
T TIGR00431 160 LEVHCSKGTYIRTLARDLGEKLGCGAYVSHLRRTAVGDFPLDQSVTLEEL 209 (209)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHcCChhhC
Confidence 99999999999999999999999999999999999999999999999874
|
TruB, the tRNA pseudouridine 55 synthase, converts uracil to pseudouridine in the T loop (not the anticodon loop - beware mis-annotation in Swiss-Prot) of most tRNAs of all three domains of life. This model is built on a seed alignment of bacterial proteins only. Saccharomyces cerevisiae protein YNL292w (Pus4) has been shown to be the pseudouridine 55 synthase of both cytosolic and mitochondrial compartments, active at no other position on tRNA and the only enzyme active at that position in the species. A distinct yeast protein YLR175w, (centromere/microtubule-binding protein CBF5) is an rRNA pseudouridine synthase, and the archaeal set is much more similar to CBF5 than to Pus4. It is unclear whether the archaeal proteins found by this model are tRNA pseudouridine 55 synthases like TruB, rRNA pseudouridine synthases like CBF5, or (as suggested by the absence of paralogs in the Archaea) both. CBF5 likely has additional, eukaryotic-specific |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-65 Score=667.09 Aligned_cols=466 Identities=26% Similarity=0.379 Sum_probs=393.4
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec----------CeEE
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN----------GTRI 987 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~----------~~~i 987 (1527)
+++++|||+|+||+|||||||+++|++.+|.+.+......+++|+.+.|++||+|+.++...+.|. ++.+
T Consensus 15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i 94 (836)
T PTZ00416 15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLI 94 (836)
T ss_pred CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEE
Confidence 357899999999999999999999999999887654444578999999999999999998888886 7889
Q ss_pred EEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCC----C-------CChhh
Q psy1758 988 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS----N-------ARPEW 1056 (1527)
Q Consensus 988 niiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~----~-------a~~~~ 1056 (1527)
||+|||||.||.+++.++++.+|+||+||||.+|+++||+.+|+.+.+.++|.|+|+||||+. + +++..
T Consensus 95 ~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~~~~~~ 174 (836)
T PTZ00416 95 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIYQNFVK 174 (836)
T ss_pred EEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 4 67788
Q ss_pred hHHHHHHHHhhhcccc------cccCCcEEEeccccCCcC---------------------------------------C
Q psy1758 1057 VVDATFDLFDKLCATE------EQLDFPVIYTSALHGYAN---------------------------------------E 1091 (1527)
Q Consensus 1057 v~~~~~~~~~~l~~~~------~~~~~pvi~~SA~~g~~~---------------------------------------~ 1091 (1527)
++++++..+....... .+...-+.+.|+..||+- .
T Consensus 175 ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~~~~~~~~ 254 (836)
T PTZ00416 175 TIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKTKKWIKD 254 (836)
T ss_pred HHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCCCCEEEec
Confidence 8888887665321100 011111333444422210 0
Q ss_pred -------------------------------Ccccc----c------------C---------------CChhHHHHHHh
Q psy1758 1092 -------------------------------NSKAR----Q------------G---------------NMIPLFEAILK 1109 (1527)
Q Consensus 1092 -------------------------------~~~~~----~------------~---------------gi~~Ll~~i~~ 1109 (1527)
+.+.. . . -++.||++|++
T Consensus 255 ~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~~~~~Pv~~~Lld~i~~ 334 (836)
T PTZ00416 255 ETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVMQKWLPAADTLLEMIVD 334 (836)
T ss_pred cCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHHHHHhchHHHHHHHHHH
Confidence 00000 0 0 01678999999
Q ss_pred hcCCCCC-------------------------CCCCCceeEEEeeeccccCce-EEEEEeecCccccCCEEEEecCCCCC
Q psy1758 1110 YVPVHKD-------------------------NSNNPLQLQIISLEYSSYLGK-IGIGRILSGRIKSLQDVVIMNGPDDK 1163 (1527)
Q Consensus 1110 ~lp~p~~-------------------------~~~~p~~~~V~~~~~d~~~G~-v~~grV~sG~lk~Gd~v~~~~~~~g~ 1163 (1527)
++|+|.. ++++|+.++|||+.++++.|+ ++|+|||||+|+.||.|++.+.+...
T Consensus 335 ~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v~~~~~~~ 414 (836)
T PTZ00416 335 HLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGPNYVP 414 (836)
T ss_pred hCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEEeCCCCCC
Confidence 9999941 235699999999999999999 89999999999999999976552111
Q ss_pred cCcc-----eeeeEEEeecCceeEeeeeecCCEEEEeccee--cccCCeeeCCCCCCCCCCCccC-CCceeEEEEecCCC
Q psy1758 1164 PNKA-----KINQIRVFKGLDRVLVNEALSGDIVLITGIEE--ICIGSTICDPSKPNGLPMLNID-EPTLTINFMVNNSP 1235 (1527)
Q Consensus 1164 ~~~~-----kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~--~~iGdTi~~~~~~~~l~~~~~~-~P~l~~~~~~~~~p 1235 (1527)
..++ +|++|+.++|.+..++++|.|||||+|.|+++ ..+| ||++...+.+++++.++ +|++.+++.|.+.
T Consensus 415 ~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tg-TL~~~~~~~~l~~i~~~~~Pv~~vaIep~~~- 492 (836)
T PTZ00416 415 GKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSG-TITTSETAHNIRDMKYSVSPVVRVAVEPKNP- 492 (836)
T ss_pred CCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecce-eecCCCCcccccccccCCCCeEEEEEEECCH-
Confidence 1122 59999999999999999999999999999988 7899 99988777777777775 8999999998653
Q ss_pred CCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHh-c-CcEEEEecCeeeEEEe--
Q psy1758 1236 LAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRR-E-GYELSVSRPRVIFKTL-- 1311 (1527)
Q Consensus 1236 ~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrr-e-g~ev~vs~P~V~yre~-- 1311 (1527)
. +.++|.++|.++.++||+|++.. +++|| ++++|||||||++++++|++ + |+|+.+++|+|+|||+
T Consensus 493 ---~-----d~~kL~~aL~~L~~eDPsl~~~~-~etgE-~il~g~GElHLei~l~~L~~~f~~vev~~s~P~V~yrETI~ 562 (836)
T PTZ00416 493 ---K-----DLPKLVEGLKRLAKSDPLVVCTT-EESGE-HIVAGCGELHVEICLKDLEDDYANIDIIVSDPVVSYRETVT 562 (836)
T ss_pred ---H-----HHHHHHHHHHHHHhhCCceEEEE-cCCCC-eEEEeCcHhHHHHHHHHHHHHhcCcceEecCCEEEEEEEec
Confidence 1 35799999999999999999976 78999 99999999999999999985 5 9999999999999996
Q ss_pred ---------------------------c----------------------------------------------------
Q psy1758 1312 ---------------------------N---------------------------------------------------- 1312 (1527)
Q Consensus 1312 ---------------------------~---------------------------------------------------- 1312 (1527)
+
T Consensus 563 ~~s~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~g~nil~~ 642 (836)
T PTZ00416 563 EESSQTCLSKSPNKHNRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFGPENKGPNVLVD 642 (836)
T ss_pred ccccceEEEECCCCCeeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeeccCCCCCCcEEEe
Confidence 1
Q ss_pred ---c----------------------------------------------------------------------eEeeee
Q psy1758 1313 ---G----------------------------------------------------------------------ELYEPY 1319 (1527)
Q Consensus 1313 ---g----------------------------------------------------------------------~llEP~ 1319 (1527)
+ .+||||
T Consensus 643 ~~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~~~a~p~LlEPi 722 (836)
T PTZ00416 643 VTKGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACELTASPRLLEPM 722 (836)
T ss_pred cCCcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHHhhCCCEEEeee
Confidence 1 489999
Q ss_pred EEEEEEecCcchHHHHHHHhccCCeEeeeeecCCc-EEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1320 ENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKE-RVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1320 ~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~-~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
+.++|.+|++|+|+||++|++|||+++++++.+++ ..+|++.+|++|++||.++|+++|+|+|+|++.|+||++++
T Consensus 723 ~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~~F~~y~~vp 799 (836)
T PTZ00416 723 FLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQCVFDHWQVVP 799 (836)
T ss_pred EEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEEEeccEEECC
Confidence 99999999999999999999999999999886444 48999999999999999999999999999999999999998
|
|
| >PRK00989 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-67 Score=569.29 Aligned_cols=212 Identities=39% Similarity=0.722 Sum_probs=206.9
Q ss_pred cceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecc-cccccccccCCCcEEEEEEEECcccc
Q psy1758 660 NIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGE-ATKFSNYLSEADKYYEAIIHLGITTE 738 (1527)
Q Consensus 660 ~~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~-~tk~~~~~~~~~K~Y~~~~~~G~~td 738 (1527)
..+||||+||||.|||||||++|+||+++.+||||+|||||+||||||||+|+ +||+++|+++.+|+|+++++||.+||
T Consensus 6 ~~~~G~l~i~KP~g~TS~dvv~~ikk~~~~kKvGH~GTLDP~AtGvLiv~vG~~aTkl~~~~~~~~K~Y~~~~~~G~~Td 85 (230)
T PRK00989 6 ESKEGILLVDKPQGRTSFSLIRSLTKLIGVKKIGHAGTLDPFATGVMVMLIGRKFTRLSDILLFEDKEYAAVAHLGTTTD 85 (230)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHHHhCCCcCCcCccCCCCCeeEEEEEECCchhhhHHHhcCCCcEEEEEEEECCccc
Confidence 37899999999999999999999999999999999999999999999999999 79999999999999999999999999
Q ss_pred CCCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCC
Q psy1758 739 TGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIP 818 (1527)
Q Consensus 739 t~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~ 818 (1527)
|+|.+|+|+++.+ .+++.++++++|++|+|.++|+||+|||+|+||+|||+|||+|++||+++|.|+|| +++++|+.|
T Consensus 86 T~D~~G~vi~~~~-~~~~~~~i~~~l~~f~G~~~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~i~-~~ll~~~~p 163 (230)
T PRK00989 86 SYDCDGKIVGRSK-KIPTLEEVLSAASYFQGEIQQVPPMFSAKKVQGKKLYEYARQGLSIERRPSTVQVH-LQLTKYEYP 163 (230)
T ss_pred CCCCCCcEEEecC-CCCCHHHHHHHHHhCcceEEeeCChhHeEEECCHhHHHHHhCCCccccCcEEEEEE-EEEEEeeCC
Confidence 9999999999987 46899999999999999999999999999999999999999999999999999999 999999999
Q ss_pred eEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHh
Q psy1758 819 YLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIK 873 (1527)
Q Consensus 819 ~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~ 873 (1527)
.++|+|+||+||||||||||||.+|||+|||+.|||+++|+|++++|++++++..
T Consensus 164 ~~~~~v~cs~GTYIRSL~~DiG~~Lg~~a~~~~LrRt~~G~f~l~~a~~l~~l~~ 218 (230)
T PRK00989 164 LLHFVVQCSKGTYIRSIAHELGNMLGCGAYLEELRRLRSGSFSIDQCIDGNLLDE 218 (230)
T ss_pred eEEEEEEEcCCCcHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHcCCHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999854
|
|
| >PRK04099 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-67 Score=583.47 Aligned_cols=235 Identities=34% Similarity=0.568 Sum_probs=225.1
Q ss_pred eeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCC
Q psy1758 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 741 (1527)
Q Consensus 662 ~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d 741 (1527)
|||||++|||+|||||+||+|+||.++.+|+||+|||||+||||||||+|+|||+++|++..+|+|+++++||.+|||+|
T Consensus 1 mngil~vdKP~g~tS~~vv~~ikk~~~~kKvGH~GTLDP~AtGvLiv~iG~aTKl~~~l~~~~K~Y~a~~~lG~~TdT~D 80 (273)
T PRK04099 1 MNRLFVANKPAGMSSNAFLSRLKRKYGVKKAGFSGTLDPFAKGVLIVAFGQYTKLFRFLKKTPKTYRATLWLGASSPSLD 80 (273)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCCCccccCccCCCCCeeEEEEEEChHhhhHHHhccCCceEEEEEEECCcccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeEE
Q psy1758 742 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLT 821 (1527)
Q Consensus 742 ~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~~ 821 (1527)
.+| |++.+++.+++.++|+++|++|+|+++|+||+|||+|+||||||+|||+|++|++++|+++||++++++|+.|.++
T Consensus 81 ~e~-i~~~~~~~~~~~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~~~ll~~~~p~~~ 159 (273)
T PRK04099 81 IEN-IESIQIIKPFDKDLIEKILKSLQGEISYTPPKFSAKKINGKRAYELARKGEEFELKPITMEIFDCKLLSYNHPFLT 159 (273)
T ss_pred Ccc-eEEeccCCCCCHHHHHHHHHhCcceEEEeCChhhEEeeCCHhHHHHHhCCcccccCceeEEEEEEEEEEEeCCEEE
Confidence 998 8888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccccceeeeccc
Q psy1758 822 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLSDL 901 (1527)
Q Consensus 822 ~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~lP~i~l~d~ 901 (1527)
|+|+||+||||||||+|||.+|||+|||++|||+++|+|+++++.. |.|++. + ++|.+.+.+
T Consensus 160 f~v~cs~GTYIRSL~~Dig~~Lg~~a~m~~LrRt~~G~f~~~~~~~---------------l~pl~~-l-~l~~~~~~~- 221 (273)
T PRK04099 160 FEITVSEGAYIRSLGELIAKKLGVNGTLSSLERLSEGKFVYENEKA---------------LNPLEY-L-NLPQNFYLG- 221 (273)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEeEEECCCcHHHCee---------------cCChhh-c-ccceEechh-
Confidence 9999999999999999999999999999999999999998877542 667766 3 899999998
Q ss_pred ccceeccCcccccc
Q psy1758 902 LSKRFLHGQNLFLS 915 (1527)
Q Consensus 902 ~~~~i~nG~~i~ls 915 (1527)
....+.+|+++.+.
T Consensus 222 ~~~~i~~G~ki~~~ 235 (273)
T PRK04099 222 DKNNLELGKKLFVE 235 (273)
T ss_pred HHHHHhCCCeeccC
Confidence 88999999998764
|
|
| >cd00506 PseudoU_synth_TruB_like PseudoU_synth_TruB: Pseudouridine synthase, TruB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-66 Score=564.22 Aligned_cols=208 Identities=38% Similarity=0.609 Sum_probs=204.6
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCCCc
Q psy1758 664 GVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIE 743 (1527)
Q Consensus 664 G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d~~ 743 (1527)
|||+||||.|||||||++++|+.|+.+||||+|||||+||||||+|+|+|||+++|++..+|+|+++++||.+|||+|++
T Consensus 1 Gil~i~KP~g~tS~~vv~~ik~~~~~kKvGH~GTLDP~AsGvLiv~vG~aTkl~~~~~~~~K~Y~~~~~lG~~TdT~D~~ 80 (210)
T cd00506 1 GLFAVDKPQGPSSHDVVDTIRRIFLAEKVGHGGTLDPFATGVLVVGIGKATKLLKHLLAATKDYTAIGRLGQATDTFDAT 80 (210)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCccccCCCCcCCCcCeeEEEEEECHHHhhhHHHhcCCceEEEEEEECCcCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC--CeEE
Q psy1758 744 GKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI--PYLT 821 (1527)
Q Consensus 744 g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~--~~~~ 821 (1527)
|+|++++++.|+|.++|++++++|+|+++|+||+|||+|+||||||||||+|++||+++|+++||++++++|+. |.+.
T Consensus 81 G~v~~~~~~~~it~e~l~~~l~~f~G~i~Q~pP~ySAvKv~G~raYelAR~G~~v~~~~r~v~I~~i~ll~~~~~~~~~~ 160 (210)
T cd00506 81 GQVIEETPYDHITHEQLERALETLTGDIQQVPPLYSAVKRQGQRAYELARRGLLVPDEARPPTIYELLCIRFNPPHFLLE 160 (210)
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHCCCeEEEeCCchheEEECCHhHHHHHHCCCccccCcEeEEEEEEEEEEEcCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987 5899
Q ss_pred EEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHH
Q psy1758 822 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTI 871 (1527)
Q Consensus 822 ~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l 871 (1527)
|+++||+||||||||||||.+|||+|||++|||+++|+|++++|++++++
T Consensus 161 ~~v~cs~GTYIRsL~~Dig~~Lg~~a~l~~L~R~~~G~f~~~~a~~l~~l 210 (210)
T cd00506 161 VEVVCETGTYIRTLIHDLGLELGVGAHVTELRRTRVGPFKVENAVTLHHL 210 (210)
T ss_pred EEEEECCCcCHHHHHHHHHHHhCCcEEEEEEEEEEECCCchhhccchhhC
Confidence 99999999999999999999999999999999999999999999998764
|
This group consists of eukaryotic, bacterial and archeal pseudouridine synthases similar to Escherichia coli TruB, Saccharomyces cerevisiae Pus4, M. tuberculosis TruB, S. cerevisiae Cbf5 and human dyskerin. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruB, M. tuberculosis TruB and S. cerevisiae Pus4, make psi55 in the T loop of tRNAs. Pus4 catalyses the formation of psi55 in both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. Mutations in human dysker |
| >PRK02193 truB tRNA pseudouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=582.50 Aligned_cols=234 Identities=38% Similarity=0.535 Sum_probs=222.5
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCCCcc
Q psy1758 665 VLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEG 744 (1527)
Q Consensus 665 ~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d~~g 744 (1527)
||++|||.||||||||+++||.++.+|+||+|||||+||||||+|+|+|||+++|+++.+|+|+++++||.+|||+|++|
T Consensus 2 il~i~KP~G~tS~dvv~~vrr~~~~kKvGH~GTLDP~AtGvL~v~vG~aTkl~~~l~~~~K~Y~a~~~lG~~TdT~D~~G 81 (279)
T PRK02193 2 IKLLYKPKGISSFKFIKNFAKTNNIKKIGHTGTLDPLASGLLLVATDEDTKLIDYLDQKDKTYIAKIKFGFISTTYDSEG 81 (279)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccCccCCCcCeeEEEEEEChhhhhhHHhccCCcEEEEEEEeCCcccCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCC--eEEE
Q psy1758 745 KIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIP--YLTL 822 (1527)
Q Consensus 745 ~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~--~~~~ 822 (1527)
+|+++.++.+++.+++++++++|+|+++|+||+|||+|+||+|||+|||+|++|++++|+|+||++++++|+.| .+.|
T Consensus 82 ~i~~~~~~~~~~~~~l~~~l~~f~G~i~Q~PP~ySAvKv~GkraYelAR~G~~ve~~~r~v~I~~i~ll~~~~~~~~~~~ 161 (279)
T PRK02193 82 QIINVSQNIKVTKENLEEALNNLVGSQKQVPPVFSAKKVNGKRAYDLARQGKQIELKPIEIKISKIELLNFDEKLQNCVF 161 (279)
T ss_pred CEEeecCCCCCCHHHHHHHHHhCcCeEEEeCChHHeEeeCCHhHHHHHhCCceeccCCeeEEEEEEEEEEEcCCCceEEE
Confidence 99998888889999999999999999999999999999999999999999999999999999999999999875 8999
Q ss_pred EEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccccceeeecccc
Q psy1758 823 RIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLSDLL 902 (1527)
Q Consensus 823 ~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~lP~i~l~d~~ 902 (1527)
+|+||+||||||||||||.+|||+|||++|||+++|+|++++ +.. .++|++ +.++|.+.++++.
T Consensus 162 ~v~cskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~~~~------l~~--------~l~p~~--~~~lp~v~l~~~~ 225 (279)
T PRK02193 162 MWVVSRGTYIRSLIHDLGKMLKTGAYMSDLERTKIGNLDKNF------LNQ--------SLNPLD--LIDLEQVKLDKEE 225 (279)
T ss_pred EEEECCCcCHHHHHHHHHHHHCCCEEEEEEEeEEECCcCHHH------HHh--------hcChhh--HhhCCeEEeCHHH
Confidence 999999999999999999999999999999999999998766 211 367775 4489999999999
Q ss_pred cceeccCccccc
Q psy1758 903 SKRFLHGQNLFL 914 (1527)
Q Consensus 903 ~~~i~nG~~i~l 914 (1527)
...+.||+.+..
T Consensus 226 ~~~i~nG~~i~~ 237 (279)
T PRK02193 226 LELLLQGKKISF 237 (279)
T ss_pred HHHHHCcCcccc
Confidence 999999999854
|
|
| >KOG0464|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=544.05 Aligned_cols=465 Identities=25% Similarity=0.386 Sum_probs=403.5
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccc--eecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCC
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA--RIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPG 994 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~--~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPG 994 (1527)
.+..++|||+|++|+|+||||..+++++.+|.+...+.+++ ++.|....|||||||+.+....|+|+|+++|+|||||
T Consensus 32 p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpg 111 (753)
T KOG0464|consen 32 PAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPG 111 (753)
T ss_pred CchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCC
Confidence 34578999999999999999999999999999998888765 7999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhh-------
Q psy1758 995 HADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDK------- 1067 (1527)
Q Consensus 995 h~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~------- 1067 (1527)
|.||.-+++|.++..|+++.|+||+.|+++||..+|+++.++++|.+.|+||||+..++++..++.+++.+..
T Consensus 112 hvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~l 191 (753)
T KOG0464|consen 112 HVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQL 191 (753)
T ss_pred cceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999988875521
Q ss_pred ---------------------hc---c---ccc-----------------------------------------------
Q psy1758 1068 ---------------------LC---A---TEE----------------------------------------------- 1073 (1527)
Q Consensus 1068 ---------------------l~---~---~~~----------------------------------------------- 1073 (1527)
++ . .+.
T Consensus 192 pi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~ 271 (753)
T KOG0464|consen 192 PIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENF 271 (753)
T ss_pred cccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccc
Confidence 00 0 000
Q ss_pred ------------------ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCC-------CCCCceeEEEe
Q psy1758 1074 ------------------QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN-------SNNPLQLQIIS 1128 (1527)
Q Consensus 1074 ------------------~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~-------~~~p~~~~V~~ 1128 (1527)
+...|+.+.||.++. |+++|++++.-++|+|... ....++++.|+
T Consensus 272 d~i~a~elksai~~lt~aq~a~~i~cgsaiknk----------giqplldavtmylpspeernyeflqwykddlcalafk 341 (753)
T KOG0464|consen 272 DKIDAEELKSAIHELTCAQKAAPILCGSAIKNK----------GIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALAFK 341 (753)
T ss_pred cccCHHHHHHHHHHHhhhhhhcceehhhhhccc----------CccchhhhhhhccCChhhcchHHHhhhhhhHHHHhhh
Confidence 001466677777665 9999999999999999642 23568899999
Q ss_pred eeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeC
Q psy1758 1129 LEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICD 1208 (1527)
Q Consensus 1129 ~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~ 1208 (1527)
+.+|...|.++|.|||+|+++..-.|.+.+. .-.+.+.+++.....+..+++++.||+|...+|++...+|||+..
T Consensus 342 vlhdkqrg~l~fmriysgsi~~~~ai~nin~----~~se~~~kl~~pfade~~~i~qlsagnialt~glk~tatgdtiva 417 (753)
T KOG0464|consen 342 VLHDKQRGPLSFMRIYSGSIHNNLAIFNING----MCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHTATGDTIVA 417 (753)
T ss_pred hhcccccCceeEEEEecccccCceeeeeccc----ccccchHhhhccchhhhhhhhhcccccEEEEecceeeccCCeEEe
Confidence 9999999999999999999999999988754 345789999999999999999999999999999999999999965
Q ss_pred CCC------------------------CCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceE
Q psy1758 1209 PSK------------------------PNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLR 1264 (1527)
Q Consensus 1209 ~~~------------------------~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~ 1264 (1527)
... ..-+.++++|+|++.+.+.|..- .+ ..++..+|+-+..+||||+
T Consensus 418 skasa~aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~---~k------~~d~ehale~lqredpslk 488 (753)
T KOG0464|consen 418 SKASAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSL---RK------LNDFEHALECLQREDPSLK 488 (753)
T ss_pred cchhHHHHHHHhhccchhhccCCccccceeeecccCCCceEEEeccCccc---cc------chhHHHHHHHHhccCCcee
Confidence 421 12467899999999999986321 11 2456677777888899999
Q ss_pred EEecCCCCCeEEEEecchhHHHHHHHHHHhc-CcEEEEecCeeeEEEe------------c-------------------
Q psy1758 1265 VTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFKTL------------N------------------- 1312 (1527)
Q Consensus 1265 v~~~~~~~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs~P~V~yre~------------~------------------- 1312 (1527)
+..++++|+ .++.||||||++++.+|++|+ |+++-+++-+|.|||. +
T Consensus 489 ir~d~dsgq-til~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~ 567 (753)
T KOG0464|consen 489 IRFDPDSGQ-TILCGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEE 567 (753)
T ss_pred EEecCCCCc-eEEeccchhhHHHHHHHHHhhcCchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeecc
Confidence 999999999 999999999999999999987 9999999999999984 0
Q ss_pred ----------------------------------------c---------------------------------------
Q psy1758 1313 ----------------------------------------G--------------------------------------- 1313 (1527)
Q Consensus 1313 ----------------------------------------g--------------------------------------- 1313 (1527)
|
T Consensus 568 tqa~ip~kkiefe~~es~n~~~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~n~alisac~qkcvqe 647 (753)
T KOG0464|consen 568 TQAHIPFKKIEFELAESANEGLLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKINPALISACAQKCVQE 647 (753)
T ss_pred ccccccceeEEeeccccccchhhhhHHHHHHhhHHHHHhcCCccCCchhheeEeeEEEEecCCcCCHHHHHHHHHHHHHH
Confidence 0
Q ss_pred -------eEeeeeEEEEEEecC-cchHHHHHHHhccCCeEeeeeecCCcEE-EEEEEechhhhcChHHHHccccceeEEE
Q psy1758 1314 -------ELYEPYENLFVDIEE-INQGIIMQKLNYRGGDLKNIEINEKERV-RLEYRIPSRGLIGFQNEFITLTRGTGLI 1384 (1527)
Q Consensus 1314 -------~llEP~~~~~i~vp~-e~~G~v~~~l~~rrG~~~~~~~~~~~~~-~l~~~vP~~~l~g~~~~l~s~T~G~g~~ 1384 (1527)
+++||.|+++|++-. +|...|+.+|.+|||.+...+...+..+ ++-+.+|++|+.||+..|+++|+|.|.|
T Consensus 648 alkkad~~l~eplm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~~~s~~lrtltsg~a~~ 727 (753)
T KOG0464|consen 648 ALKKADKQLLEPLMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIEGLSKTLRTLTSGFADF 727 (753)
T ss_pred HHhhhhHHHhhhhhheEEEEecCCCccHHHHHHHHhhccchhcccccccchheeeEeeeHHHhhcHHHHHHHHhcccceE
Confidence 589999999999987 9999999999999999999987644443 6999999999999999999999999999
Q ss_pred EeEecceeecccccccccccc
Q psy1758 1385 SHVFEEYAPFYNKSKYDLGKR 1405 (1527)
Q Consensus 1385 ~~~f~~Y~~~~~~~~~~i~~~ 1405 (1527)
..+|.+|+.+.++++-++-++
T Consensus 728 ale~~~yqamn~~dk~~il~k 748 (753)
T KOG0464|consen 728 ALEFRGYQAMNEHDKMEILKK 748 (753)
T ss_pred EEEecchhhcChHHHHHHHHh
Confidence 999999999876555555433
|
|
| >cd02867 PseudoU_synth_TruB_4 PseudoU_synth_TruB_4: Pseudouridine synthase homolog 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-61 Score=546.12 Aligned_cols=201 Identities=34% Similarity=0.480 Sum_probs=196.2
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHhcc-----------------------------ccccccCCCCCCCeEEEEEEecccc
Q psy1758 664 GVLLLDKPYGLSSNNALKKIKYLLNA-----------------------------KKVGYTGTLDPFATGLLPLCFGEAT 714 (1527)
Q Consensus 664 G~~~v~Kp~g~ts~~~~~~~~~~~~~-----------------------------~kvgh~gtLdp~a~Gvl~~~~g~~t 714 (1527)
|||+||||+|||||+|++++|++|+. +||||+|||||+||||||||+|+||
T Consensus 1 Gil~i~KP~G~TS~~vv~~lk~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KiGH~GTLDPlAsGVLvvgvG~aT 80 (312)
T cd02867 1 GVFAINKPSGITSAQVLNDLKPLFLNSALFKDKIQRAVAKRGKKARRRKGRKRSKLKIGHGGTLDPLATGVLVVGVGAGT 80 (312)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHhcccccccchhhhhhhhhhhhhhhhccccccccccccccccCCccceeEEEEECcHH
Confidence 89999999999999999999999985 7999999999999999999999999
Q ss_pred cccccccCCCcEEEEEEEECccccCCCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhc
Q psy1758 715 KFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARS 794 (1527)
Q Consensus 715 k~~~~~~~~~K~Y~~~~~~G~~tdt~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~ 794 (1527)
|+++|++..+|+|+++++||.+|||+|++|+|++++++.|+|.++|+++|++|+|+++|+||+|||+|+||||||||||+
T Consensus 81 K~l~~~l~~~K~Y~~~~~lG~~TdT~D~eG~Ii~~~~~~~it~e~i~~~l~~F~G~i~Q~PP~ySAvKv~GkrlYeyAR~ 160 (312)
T cd02867 81 KQLQDYLSCSKTYEATGLFGASTTTYDREGKILKKKPYSHITREDIEEVLAKFRGDIKQVPPLYSALKMDGKRLYEYARE 160 (312)
T ss_pred HHHHHHhcCCceEEEEEEeCCcccCCCCCCCEEEecCCCCCCHHHHHHHHHhcceeeeeeCcchheeeeCCHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccc--ceeEEEEEEEEEEEe--CCeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCcccccc
Q psy1758 795 GITIKRK--LRYIKIYKITIIDYT--IPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDK 864 (1527)
Q Consensus 795 g~~~~~~--~r~~~i~~~~~~~~~--~~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~ 864 (1527)
|+++|++ +|.|+||++++++|+ .|.++|+|+||+||||||||||||.+|||+|||+.|||+++|+|++++
T Consensus 161 G~~v~~~~~~R~V~I~~~~l~~~~~~~~~~~~~v~cskGTYIRsL~~Dig~~Lg~~a~~~~L~Rt~~g~f~~~~ 234 (312)
T cd02867 161 GKPLPRPIERRQVVVSELLVKDWIEPGPLFTRTVEEEGKQYERSVVKMLGKELKTFAEVTELTATAEGDPVEEV 234 (312)
T ss_pred CccccCCCCCceEEEEEEEEEeccCCCCeEEEEEEeCCcCCHHHHHHHHHHHhCCCeEEEEEEeeeecCccccc
Confidence 9999987 999999999999987 589999999999999999999999999999999999999999998864
|
This group consists of Eukaryotic TruB proteins similar to Saccharomyces cerevisiae Pus4. S. cerevisiae Pus4, makes psi55 in the T loop of both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). |
| >COG0130 TruB Pseudouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-58 Score=514.46 Aligned_cols=224 Identities=40% Similarity=0.679 Sum_probs=212.1
Q ss_pred ccccccee---eEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEE
Q psy1758 656 KKNKNIIH---GVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIH 732 (1527)
Q Consensus 656 ~~~~~~~~---G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~ 732 (1527)
++.++.++ ||+++|||.|||||||++|+||+|+.+|+||+|||||+||||||+|+|+|||+++||+..+|+|+++++
T Consensus 5 ~~~~~~i~~~~Gil~ldKP~G~tS~~~v~~vkkil~~~K~GH~GTLDP~atGvLpi~ig~aTKl~~~l~~~~K~Y~a~~~ 84 (271)
T COG0130 5 YPEKRPIEIYIGVINLDKPPGPTSHEVVAWVKRILGVEKAGHGGTLDPLATGVLPICLGEATKLVQYLLDADKEYVATVR 84 (271)
T ss_pred CccccccccccceEEeeCCCCCCHHHHHHHHHHHhCccccccccccCCcccceEEEEechhHhHHHHHhhCCcEEEEEEE
Confidence 45566778 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECccccCCCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEE
Q psy1758 733 LGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITI 812 (1527)
Q Consensus 733 ~G~~tdt~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~ 812 (1527)
||.+|| +.++|++++++|+|+|+|+||+|||+| .++++ |.|+||++++
T Consensus 85 lG~~t~-----------------~~e~i~~~l~~F~G~I~Q~PP~~SAvK-------------~~v~~--R~V~i~~l~~ 132 (271)
T COG0130 85 LGDQTD-----------------SEEEVRAALEAFTGEIYQIPPMFSAVK-------------REVER--RKITIYDLLE 132 (271)
T ss_pred eCCcCC-----------------CHHHHHHHHHhcceeeEecCCchhhcc-------------ceEee--EEEEEEEeee
Confidence 999998 789999999999999999999999999 66776 9999999999
Q ss_pred EEEeCCeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccc
Q psy1758 813 IDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSS 892 (1527)
Q Consensus 813 ~~~~~~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~ 892 (1527)
++++.|.+.|+|+||+|||||+||+|||..|||+|||+.||||++|+|+++++++++++..+........++|++.++.+
T Consensus 133 ~~~~~~~~~~~v~CskGTYIRtL~~DlG~~LG~gahm~~LrRt~~g~f~~~~~~~l~~l~~~~~~~~~~~~~p~e~~l~~ 212 (271)
T COG0130 133 LDFDRNLVTLRVECSKGTYIRTLARDLGEALGCGAHMSELRRTRVGPFSEEDAVTLELLDELDAESLLRLLLPLESALSD 212 (271)
T ss_pred ccCCCceEEEEEEEecCcCHHHHHHHHHHHHCCccchhhhccccccccccccccchhhHHHHHhhhhhccccchhHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999776543334567999999999
Q ss_pred cceeeecccccceeccCcc
Q psy1758 893 FGIIYLSDLLSKRFLHGQN 911 (1527)
Q Consensus 893 lP~i~l~d~~~~~i~nG~~ 911 (1527)
+|++.++++....+.+|++
T Consensus 213 lpk~~i~~~~~~~i~~G~~ 231 (271)
T COG0130 213 LPRLVLKDSAANAIKYGAK 231 (271)
T ss_pred CCcEecCHHHHHHHHcCCc
Confidence 9999999999999999998
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=547.37 Aligned_cols=366 Identities=24% Similarity=0.344 Sum_probs=326.3
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccc------eecchhhhhcccceeEeeeeEEEEecCeEEEEEeC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA------RIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDT 992 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~------~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDT 992 (1527)
..++|||+|+||+|||||||+++|++.+|.+.+.+.+.. ..+|+++.|++||+|+.++...+.|+++++|+|||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 357899999999999999999999999998887776541 45899999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh----
Q psy1758 993 PGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL---- 1068 (1527)
Q Consensus 993 PGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l---- 1068 (1527)
|||.||..++.++++.+|++|+|||+++|+.+||+.+|+.+...++|+++|+||+|+.++++.++++++++.|..-
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~ 166 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAPI 166 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCCeeE
Confidence 9999999999999999999999999999999999999999999999999999999999999888888887765310
Q ss_pred -------------------------c-------------cccc---------c---------------------------
Q psy1758 1069 -------------------------C-------------ATEE---------Q--------------------------- 1074 (1527)
Q Consensus 1069 -------------------------~-------------~~~~---------~--------------------------- 1074 (1527)
. ..++ .
T Consensus 167 ~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~ 246 (526)
T PRK00741 167 TWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLAG 246 (526)
T ss_pred EeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhcC
Confidence 0 0000 0
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCC---------CCCCceeEEEeeec---cccCceEEEEE
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN---------SNNPLQLQIISLEY---SSYLGKIGIGR 1142 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~---------~~~p~~~~V~~~~~---d~~~G~v~~gr 1142 (1527)
.-+||+++||++++ |+.+||++|++++|+|... .+.||.++|||+.+ +++.|+++|+|
T Consensus 247 ~~~PV~~GSA~~n~----------Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvR 316 (526)
T PRK00741 247 ELTPVFFGSALNNF----------GVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVR 316 (526)
T ss_pred CeEEEEEeecccCc----------CHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEE
Confidence 01799999999999 9999999999999999532 24679999999984 56999999999
Q ss_pred eecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCCCCCCccCC
Q psy1758 1143 ILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 1222 (1527)
Q Consensus 1143 V~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~~~~~ 1222 (1527)
|+||+++.||.|++.++ | +++|+++++.+.|.++.++++|.|||||++.|++++++|||||+.+ +..+++++.++
T Consensus 317 V~sG~l~~g~~v~~~~~--~--k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~GDTL~~~~-~~~~~~i~~~~ 391 (526)
T PRK00741 317 VCSGKFEKGMKVRHVRT--G--KDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGDTFTQGE-KLKFTGIPNFA 391 (526)
T ss_pred EeccEECCCCEEEeccC--C--ceEEecceEEEecCCceECceeCCCCEEEEECCCCCccCCCccCCC-ccccCCCCCCC
Confidence 99999999999998766 3 4689999999999999999999999999999999999999999876 66788888999
Q ss_pred CceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhc-CcEEEE
Q psy1758 1223 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSV 1301 (1527)
Q Consensus 1223 P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrre-g~ev~v 1301 (1527)
|++++++.|.+. + +..||.++|.++.+|| ++++.+++++++ ++|+|+|+|||+|+++||+++ |+++.+
T Consensus 392 P~~~~~v~p~~~---~------d~~kl~~aL~~L~eED-~l~~~~~~~t~e-~il~g~G~lhleV~~~RL~~ey~v~v~~ 460 (526)
T PRK00741 392 PELFRRVRLKNP---L------KQKQLQKGLVQLSEEG-AVQVFRPLDNND-LILGAVGQLQFEVVAHRLKNEYNVEAIY 460 (526)
T ss_pred ccEEEEEEECCc---h------hHHHHHHHHHHHhhcC-CeEEEECCCCCC-EEEEEEeHHHHHHHHHHHHHHhCCEEEE
Confidence 999999998654 2 3479999999999999 599999999999 999999999999999999865 999999
Q ss_pred ecCeeeEEE
Q psy1758 1302 SRPRVIFKT 1310 (1527)
Q Consensus 1302 s~P~V~yre 1310 (1527)
++|+|++-.
T Consensus 461 ~~~~v~~~r 469 (526)
T PRK00741 461 EPVGVATAR 469 (526)
T ss_pred ecCCccEEE
Confidence 999999854
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-55 Score=541.33 Aligned_cols=364 Identities=22% Similarity=0.307 Sum_probs=325.2
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCccccccccc------ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN------ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDT 992 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~------~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDT 992 (1527)
..++|||+|+||+|||||||+++|++.+|.+.+.+.++ .+++|+++.|++||+|+.++...++|+++++|||||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 36789999999999999999999999999887766654 368999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh----
Q psy1758 993 PGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL---- 1068 (1527)
Q Consensus 993 PGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l---- 1068 (1527)
|||.+|..++.++++.+|++|+|||++.|+..||+.+|+.+...++|+++|+||+|+..++++++++++++.+...
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~~~~ 167 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAPI 167 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCCccE
Confidence 9999999999999999999999999999999999999999999999999999999999888888888888766320
Q ss_pred -------------------------c---c--c--------cc---------------------------c---------
Q psy1758 1069 -------------------------C---A--T--------EE---------------------------Q--------- 1074 (1527)
Q Consensus 1069 -------------------------~---~--~--------~~---------------------------~--------- 1074 (1527)
. . . .. .
T Consensus 168 ~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~ 247 (527)
T TIGR00503 168 TWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFHGG 247 (527)
T ss_pred EEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHHhcC
Confidence 0 0 0 00 0
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCC---------CCCCceeEEEeeec--c-ccCceEEEEE
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN---------SNNPLQLQIISLEY--S-SYLGKIGIGR 1142 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~---------~~~p~~~~V~~~~~--d-~~~G~v~~gr 1142 (1527)
.-+||+++||+++. |+++||+.+++++|+|... .++||.++|||+.+ | ++.||++|+|
T Consensus 248 ~~~PV~~GSA~~n~----------Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf~R 317 (527)
T TIGR00503 248 EMTPVFFGTALGNF----------GVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAFMR 317 (527)
T ss_pred CeeEEEEeecccCc----------cHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEEEE
Confidence 01688999999998 9999999999999999642 25789999999988 7 5999999999
Q ss_pred eecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCCCCCCccCC
Q psy1758 1143 ILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 1222 (1527)
Q Consensus 1143 V~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~~~~~ 1222 (1527)
|+||+++.|++|++.++ | +++|+++++.+.|.++.++++|.|||||++.|++++++|||||+.+ +..+++++.++
T Consensus 318 V~sG~l~~g~~v~~~~~--~--k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GDtl~~~~-~~~~~~i~~~~ 392 (527)
T TIGR00503 318 VVSGKYEKGMKLKHVRT--G--KDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDTFTQGE-KIKFTGIPNFA 392 (527)
T ss_pred EeeeEEcCCCEEEecCC--C--CcEEecchhhhhcCCceEcceeCCCCEEEEECCCCcccCCEecCCC-ceeecCCCCCC
Confidence 99999999999998766 3 4689999999999999999999999999999999999999999844 56778888899
Q ss_pred CceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHh-cCcEEEE
Q psy1758 1223 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRR-EGYELSV 1301 (1527)
Q Consensus 1223 P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrr-eg~ev~v 1301 (1527)
|.+++++.+.+. + +..||.++|.++.+||| +++.+++++++ ++|+|+|+|||+|+++||++ +|+++.+
T Consensus 393 P~~~~~v~~~~~---~------d~~kl~~aL~~L~eED~-l~v~~~~~t~e-~il~g~GelhleV~~~RL~~ey~v~v~~ 461 (527)
T TIGR00503 393 PELFRRIRLKDP---L------KQKQLLKGLVQLSEEGA-VQVFRPLDNND-LIVGAVGVLQFDVVVYRLKEEYNVEARY 461 (527)
T ss_pred cceEEEEEECCh---h------hHHHHHHHHHHHHhhCC-eEEEEcCCCCC-EEEEEEeHHHHHHHHHHHHHHhCCeEEE
Confidence 999999998653 2 35799999999999998 99999999999 99999999999999999986 5999999
Q ss_pred ecCeeeE
Q psy1758 1302 SRPRVIF 1308 (1527)
Q Consensus 1302 s~P~V~y 1308 (1527)
++|+|+.
T Consensus 462 ~~~~v~~ 468 (527)
T TIGR00503 462 EPVNVAT 468 (527)
T ss_pred eCCCceE
Confidence 9999987
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >cd02868 PseudoU_synth_hTruB2_like PseudoU_synth_ hTRUB2_Like: Pseudouridine synthase, humanTRUB2_like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=491.46 Aligned_cols=209 Identities=23% Similarity=0.274 Sum_probs=202.2
Q ss_pred eEEEEeCCCCCCHHHHHHHHHH----Hhcccccccc-CCCCCCCeEEEEEEecccccccccccC--CCcEEEEEEEECcc
Q psy1758 664 GVLLLDKPYGLSSNNALKKIKY----LLNAKKVGYT-GTLDPFATGLLPLCFGEATKFSNYLSE--ADKYYEAIIHLGIT 736 (1527)
Q Consensus 664 G~~~v~Kp~g~ts~~~~~~~~~----~~~~~kvgh~-gtLdp~a~Gvl~~~~g~~tk~~~~~~~--~~K~Y~~~~~~G~~ 736 (1527)
|+|+||||+||||+++++.+++ .++.+|+||+ |||||+|||||++|+|++||++++++. ++|+|+++++||.+
T Consensus 1 GilvvnKP~Gi~s~~~~~~~~~~l~~~~~~~k~~~~vhrLD~~aSGvl~~a~~~~tkl~~~~~~~~~~K~Y~~~~~lg~~ 80 (226)
T cd02868 1 GLFAVYKPPGVHWKHVRDTIESNLLKYFPEDKVLVGVHRLDAFSSGVLVLGVNHGNKLLSHLYSNHPTRVYTIRGLLGKA 80 (226)
T ss_pred CEEEEEcCCCCChhHHHHHHHHHHHHHccccceeeEccccCCCCceEEEEEeChhHhHHHHHHhcCCCeEEEEEEEEccc
Confidence 8999999999999999998776 4577899999 999999999999999999999999996 47999999999999
Q ss_pred ccCCCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEe
Q psy1758 737 TETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYT 816 (1527)
Q Consensus 737 tdt~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~ 816 (1527)
|||+|++|+|++++++.|++.++|+++|++|+|.++|.||.|||+|+||+|||+|||+|+++|+++|+|+||++++++|+
T Consensus 81 TdT~D~~G~v~~~~~~~~it~~~i~~~l~~f~g~~~q~~p~~sa~kv~GkraYelAR~G~~ve~~~r~v~I~~i~l~~~~ 160 (226)
T cd02868 81 TENFFHTGRVIEKTTYDHITREKIERLLAVIQSGHQQKAFELCSVDDQSQQAAELAARGLIRPADKSPPIIYGIRLLEFR 160 (226)
T ss_pred cCCCCCCCCEEEecCCCCCCHHHHHHHHHHhhCCceEECCceEEEeeCCHHHHHHHHCCCccCCCCcceEEEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEecccc--cHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHH
Q psy1758 817 IPYLTLRIHCSKGT--YIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTII 872 (1527)
Q Consensus 817 ~~~~~~~v~cs~gt--Yirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~ 872 (1527)
.|.|+|+|+||+|| ||||||+|||.+|||+|||++|||+++|+|++++|++++++.
T Consensus 161 ~p~~~~~v~cskGT~~YIRsL~~Dig~~Lg~~a~~~~L~R~~~G~f~~~~a~~~~~~~ 218 (226)
T cd02868 161 PPEFTLEVQCINETQEYLRKLIHEIGLELRSSAVCTQVRRTRDGPFTVDDALLRKQWN 218 (226)
T ss_pred CCeEEEEEEEECCCHHHHHHHHHHHHHHhCCcEEEEEEEeeEECCCCHHHcccHHHcC
Confidence 99999999999999 999999999999999999999999999999999999998874
|
This group consists of eukaryotic pseudouridine synthases similar to human TruB pseudouridine synthase homolog 2 (TRUB2). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). |
| >KOG0469|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-55 Score=495.69 Aligned_cols=466 Identities=26% Similarity=0.392 Sum_probs=383.6
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe----------------
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY---------------- 982 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~---------------- 982 (1527)
..++||+.+|+|+|||||||.+.|...+|.+......+.++||+...|+||||||.+...++.+
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 4689999999999999999999999999999877777789999999999999999999888755
Q ss_pred cCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHH
Q psy1758 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATF 1062 (1527)
Q Consensus 983 ~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~ 1062 (1527)
++..|||||.|||.||+.|+..+|+..|++++|||+.+|+..||+.++++|....+.+++|+||+|+.--..+--.+++.
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~EeLy 175 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQEELY 175 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999984222222223333
Q ss_pred HHHhh----hc-------c---ccccc---CCcEEEeccccCCcC--------------------------C---Cccc-
Q psy1758 1063 DLFDK----LC-------A---TEEQL---DFPVIYTSALHGYAN--------------------------E---NSKA- 1095 (1527)
Q Consensus 1063 ~~~~~----l~-------~---~~~~~---~~pvi~~SA~~g~~~--------------------------~---~~~~- 1095 (1527)
+.|.. .. . ...++ .-.+-++|+++||+- + +...
T Consensus 176 qtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~~ktk 255 (842)
T KOG0469|consen 176 QTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFNPKTK 255 (842)
T ss_pred HHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccccCccCC
Confidence 33321 11 0 00111 113678899999861 0 0000
Q ss_pred --------------------------------------------------------c-c--------------CCChhHH
Q psy1758 1096 --------------------------------------------------------R-Q--------------GNMIPLF 1104 (1527)
Q Consensus 1096 --------------------------------------------------------~-~--------------~gi~~Ll 1104 (1527)
. . ..-+.||
T Consensus 256 k~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wLPAadall 335 (842)
T KOG0469|consen 256 KWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWLPAADALL 335 (842)
T ss_pred cccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHhcchHHHHH
Confidence 0 0 1115788
Q ss_pred HHHHhhcCCCC-------------------------CCCCCCceeEEEeeeccccCce-EEEEEeecCccccCCEEEEec
Q psy1758 1105 EAILKYVPVHK-------------------------DNSNNPLQLQIISLEYSSYLGK-IGIGRILSGRIKSLQDVVIMN 1158 (1527)
Q Consensus 1105 ~~i~~~lp~p~-------------------------~~~~~p~~~~V~~~~~d~~~G~-v~~grV~sG~lk~Gd~v~~~~ 1158 (1527)
+.|.-++|+|. ||+++|+.|+|+++......|| .+|||||||++..|+.+.+..
T Consensus 336 emIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~KvRiqg 415 (842)
T KOG0469|consen 336 EMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLKVRIQG 415 (842)
T ss_pred HHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeeecceeccCcEEEEeC
Confidence 88888999983 5789999999999988877887 689999999999999999987
Q ss_pred CC--CCCcCc---ceeeeEEEeecCceeEeeeeecCCEEEEecceecc-cCCeeeCCCCCCCCCCCccC-CCceeEEEEe
Q psy1758 1159 GP--DDKPNK---AKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC-IGSTICDPSKPNGLPMLNID-EPTLTINFMV 1231 (1527)
Q Consensus 1159 ~~--~g~~~~---~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~-iGdTi~~~~~~~~l~~~~~~-~P~l~~~~~~ 1231 (1527)
++ .|++.. ..|.....++|...++++...||+|+++.|+++.- .+-||+..+....+..+++. .|++.+++++
T Consensus 416 PnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~AHNmrvMKFSVSPVV~VAVe~ 495 (842)
T KOG0469|consen 416 PNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEAAHNMRVMKFSVSPVVRVAVEA 495 (842)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehhhhccceEEEeeccceEEEEEec
Confidence 64 233222 12333345789999999999999999999999854 47788887766666655555 5999999987
Q ss_pred cCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhc--CcEEEEecCeeeEE
Q psy1758 1232 NNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE--GYELSVSRPRVIFK 1309 (1527)
Q Consensus 1232 ~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrre--g~ev~vs~P~V~yr 1309 (1527)
.+. -+.+||-+.|.|++.+||...+..++ .|+ .++.|-|||||||++..|+.. ++.+..|+|-|.||
T Consensus 496 Knp---------~DLpKLvEGLkrLakSDP~v~~~~~e-sGe-hiiAgaGeLHLEICLkDLeedhA~iPlk~sdPvVsYr 564 (842)
T KOG0469|consen 496 KNP---------ADLPKLVEGLKRLAKSDPMVQCIIEE-SGE-HIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYR 564 (842)
T ss_pred CCh---------hhhHHHHHHHHHHhccCCeEEEEecc-CCc-eEEeccchhhHHHHHhhHhhcccCCceecCCCeeeee
Confidence 653 14689999999999999999998874 578 899999999999999999854 99999999999999
Q ss_pred Ee------------------------------------------------------------------------c-----
Q psy1758 1310 TL------------------------------------------------------------------------N----- 1312 (1527)
Q Consensus 1310 e~------------------------------------------------------------------------~----- 1312 (1527)
|+ +
T Consensus 565 Etvs~~ss~~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCfgPd~tg~N 644 (842)
T KOG0469|consen 565 ETVSEESSQTCLSKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCFGPDGTGPN 644 (842)
T ss_pred cccccccchhhhccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhheeeEeCCCCCCCc
Confidence 95 0
Q ss_pred -----------------------------c------------------------------------------------eE
Q psy1758 1313 -----------------------------G------------------------------------------------EL 1315 (1527)
Q Consensus 1313 -----------------------------g------------------------------------------------~l 1315 (1527)
| .+
T Consensus 645 ll~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~~l~A~P~l 724 (842)
T KOG0469|consen 645 LLVDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYASVLTAGPIL 724 (842)
T ss_pred EEEecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHHHHHHHhcCcee
Confidence 0 58
Q ss_pred eeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeec-CCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeec
Q psy1758 1316 YEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEIN-EKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPF 1394 (1527)
Q Consensus 1316 lEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~-~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~ 1394 (1527)
+||++.++|++|+.++|.|.+-|+++||.+.+.++. ++....+++.+|+.|.+||..+|+|.|+|+|.-++.|+||++.
T Consensus 725 ~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAfpq~vFdHws~l 804 (842)
T KOG0469|consen 725 QEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQMVFDHWSIL 804 (842)
T ss_pred cCceEEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccchhhhcccCCccccceeeeccccC
Confidence 999999999999999999999999999999998876 4557889999999999999999999999999999999999998
Q ss_pred c
Q psy1758 1395 Y 1395 (1527)
Q Consensus 1395 ~ 1395 (1527)
+
T Consensus 805 p 805 (842)
T KOG0469|consen 805 P 805 (842)
T ss_pred C
Confidence 8
|
|
| >KOG1144|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-53 Score=499.40 Aligned_cols=486 Identities=28% Similarity=0.420 Sum_probs=388.0
Q ss_pred ccccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC------------------eEEEEEeCCC
Q psy1758 64 ESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH------------------GSITFLDTPG 125 (1527)
Q Consensus 64 ~~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~------------------~~i~~iDTPG 125 (1527)
....|.|.+||+||+++|||-|++.+++.+++.++.+|||+.++...+...+ -.+.+|||||
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg 549 (1064)
T KOG1144|consen 470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG 549 (1064)
T ss_pred chhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC
Confidence 3457899999999999999999999999999999999999999987765431 1378899999
Q ss_pred hhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCc-------chh-------------
Q psy1758 126 HEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLD-------INL------------- 185 (1527)
Q Consensus 126 ~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~-------~~~------------- 185 (1527)
||.|.+++.++.+.||++|||+|+.+|+.+||++.++.++..+.|+||++||+|+.. ++.
T Consensus 550 hEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~ 629 (1064)
T KOG1144|consen 550 HESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN 629 (1064)
T ss_pred chhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999863 110
Q ss_pred ------HHHHHHHhhhccc------ccccCCCCcEEEeeccCCCChhHHHHHHHHHHHH-HhhcCCCCCCCceEEEEEee
Q psy1758 186 ------DRIKQDLISEQVI------PEEYGGASPFISISAKTGVGINKLLENISLQAEI-LELKAPVTTPAKGVIIESRL 252 (1527)
Q Consensus 186 ------~~~~~~l~~~~~~------~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~-~~~~~~~~~p~~~~v~~~~~ 252 (1527)
..+..++.++++. ..+.+..+.++|+||.+|+||.+|+-+|+.+... +..+..--...++.|+++..
T Consensus 630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~cTVlEVKv 709 (1064)
T KOG1144|consen 630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQCTVLEVKV 709 (1064)
T ss_pred HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhheeeEEEEEEe
Confidence 0111122222221 1223456789999999999999999999876543 22222233457899999999
Q ss_pred cCCCceEEEEEeeccEEEeccEEEe----cceeeeEeEeeccCC----------ceeeecCCCcceEe--cCCCCCCCCC
Q psy1758 253 DKGKGPVATVLIQSGTLRCSDIVVA----GASYGRIRSMLNENG----------KNILEAGPSIPVEI--QGLTKVPFSG 316 (1527)
Q Consensus 253 ~~~~G~v~~~~v~~G~l~~gd~vv~----g~~~~kVr~i~~~~g----------~~v~~a~~~~~v~I--~gl~~~~~~G 316 (1527)
..|.|+...+++.+|.|+.||.|++ |+....||.++..+- ...+++.+.+.+.| .+|.+. .+|
T Consensus 710 ieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEka-iaG 788 (1064)
T KOG1144|consen 710 IEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKA-IAG 788 (1064)
T ss_pred ecCCCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHH-hcC
Confidence 9999999999999999999998865 455567777765432 11233444444444 455554 799
Q ss_pred CeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceee
Q psy1758 317 EELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKI 396 (1527)
Q Consensus 317 ~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i 396 (1527)
..++++.-+++..++.. .-...+++.++.+.. ..-++.|.|.+.||+|||+++|.. ++|
T Consensus 789 ~~l~VvgpeDd~e~lk~-------------~~m~dl~~~l~~Id~---sgeGv~vqastlgslealleflk~-----~kI 847 (1064)
T KOG1144|consen 789 TRLLVVGPEDDIEELKE-------------EAMEDLESVLSRIDK---SGEGVYVQASTLGSLEALLEFLKT-----VKI 847 (1064)
T ss_pred CeeEEeCCcccHHHHHH-------------HHHHHHHHHHHHhhc---cCCceEEEecccchHHHHHHHHhh-----cCc
Confidence 99999976665544421 112345556665543 335789999999999999999987 499
Q ss_pred eEEeeccCcCChhhHHHHHhc------CCEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHHHHHHHHHHhccCCcceee
Q psy1758 397 QVIHNAVGNINESDINLAIAS------KAIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKE 470 (1527)
Q Consensus 397 ~iv~~~vG~it~~Dv~~A~~~------~a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~l~~~~~e 470 (1527)
+|...++|||.+.||+.|++. .|+||||.|++..+++++|.+.||+|++.+|||||||.+..+.+..++...++
T Consensus 848 Pv~gi~IGPVhKKDvmka~~MlEk~kEyA~iLaFDVkv~~eA~e~Ad~~gVkIF~adiIYhLfD~f~~y~e~~ke~kkke 927 (1064)
T KOG1144|consen 848 PVSGIGIGPVHKKDVMKASVMLEKKKEYATILAFDVKVEREARELADEMGVKIFCADIIYHLFDAFTKYIEEIKEEKKKE 927 (1064)
T ss_pred ccccccccccchHHHHHHHHHHhhccceeEEEEEeeEeeHHHHHHHHhhCceeeehhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999985 69999999999999999999999999999999999999999999888766555
Q ss_pred ---eeeEeEEEe----EEEEcCCCCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccccc
Q psy1758 471 ---NLLGLAEIR----QVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLS 543 (1527)
Q Consensus 471 ---~~~g~a~v~----~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~ 543 (1527)
.-+.++.++ ++|+ ++.+.|.|+.|..|.+++|+++||.. .+.|+-|+|.||.++++.|.++++|+|+++.+
T Consensus 928 ~~~~AvFPc~L~ilpn~ifN-~RdPiv~GV~V~~GilkiGTPiCv~~-r~~~~lG~v~Sie~Nh~~vd~akkGqeVaiKi 1005 (1064)
T KOG1144|consen 928 SADEAVFPCVLQILPNCIFN-KRDPIVLGVDVEEGILKIGTPICVPK-REFIDLGRVASIENNHKPVDYAKKGQEVAIKI 1005 (1064)
T ss_pred ccCceeeeeehhhhhHhhcc-CCCCeEEEEEeecCeeecCCceEEec-cceeeeeeeeeecccCcccchhhcCCeEEEEE
Confidence 455666554 4777 66679999999999999999999996 66889999999999999999999999999998
Q ss_pred hhhhhhhhhhHHhhhhhccCcceeeeEEEEE
Q psy1758 544 RIENQIQRDISEIIAFDIQNPIINIITITEV 574 (1527)
Q Consensus 544 r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V 574 (1527)
...+.-.+ .....||+..|+..+.||-.++
T Consensus 1006 e~~~~e~~-~mfGRHf~~~D~LyS~isR~SI 1035 (1064)
T KOG1144|consen 1006 EASNGEEQ-KMFGRHFDMEDILYSHISRRSI 1035 (1064)
T ss_pred ecCCCCCc-chhhcccCccchHHHHhhHhhH
Confidence 76544333 4667789999998777664443
|
|
| >PRK04270 H/ACA RNA-protein complex component Cbf5p; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-54 Score=498.51 Aligned_cols=230 Identities=34% Similarity=0.530 Sum_probs=210.9
Q ss_pred cccccccccccceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEE
Q psy1758 650 CMQFHIKKNKNIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEA 729 (1527)
Q Consensus 650 ~~~~~~~~~~~~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~ 729 (1527)
+|+...+--...++|||+||||.||||||||+++||+|+.+|+||+|||||+||||||+|+|+|||+++|+++.+|+|++
T Consensus 9 ~~~~~~~~~~~~~~g~l~i~Kp~g~tS~~~v~~~r~~~~~kkvGH~GTLDp~A~GvL~v~~g~atk~~~~~~~~~K~Y~~ 88 (300)
T PRK04270 9 CPPEKRPIEELIKFGVVNLDKPPGPTSHEVAAWVRDILGVEKAGHGGTLDPKVTGVLPVALGKATKVVQALLESGKEYVC 88 (300)
T ss_pred CCcccCCHHHhcCCCEEEEECCCCCCHHHHHHHHHHHhccccccCCCCCCCcCeEEEEEEEChHhhhhHHhccCCcEEEE
Confidence 45544444445799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECccccCCCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEE
Q psy1758 730 IIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYK 809 (1527)
Q Consensus 730 ~~~~G~~tdt~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~ 809 (1527)
+++||. ++|.++++++|++|+|++.|+||+|||+| +++|+++||+
T Consensus 89 ~~~~g~------------------~~~~~~~~~~l~~~~g~i~Q~pP~~SA~k-----------------~~~r~v~I~~ 133 (300)
T PRK04270 89 VMHLHG------------------DVPEEDIRKVFKEFTGEIYQKPPLKSAVK-----------------RRLRVRTIYE 133 (300)
T ss_pred EEEECC------------------CCCHHHHHHHHHHCCCcEEeECCHHHhcc-----------------CCceEEEEEE
Confidence 999994 37899999999999999999999999998 4699999999
Q ss_pred EEEEEEeCCeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhh----hhh---h-cc
Q psy1758 810 ITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYS----EYE---R-IS 881 (1527)
Q Consensus 810 ~~~~~~~~~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~----~~~---~-~~ 881 (1527)
+++++|+.|.++|+|+||+||||||||||||.+|||+|||++||||++|+|++++|++++++.+.. ... . ..
T Consensus 134 i~~~~~~~~~~~~~v~cs~GtYIRsl~~dig~~Lg~~a~~~~L~R~~~g~f~~~~a~~l~~l~~~~~~~~~~~d~~~l~~ 213 (300)
T PRK04270 134 LEILEIDGRDVLFRVRCESGTYIRKLCHDIGLALGTGAHMQELRRTRTGPFTEEDLVTLQDLADAYYFWKEDGDEEELRR 213 (300)
T ss_pred EEEEEecCCEEEEEEEECCceEHHHHHHHHHHHHCCCeEEEEEEeEEECCCCcchhcCHHHHHHhhhhhhcccchhhHHh
Confidence 999999999999999999999999999999999999999999999999999999999999997642 111 1 23
Q ss_pred ccCcccccccccceeeecccccceeccCccccc
Q psy1758 882 SLIPIDILLSSFGIIYLSDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 882 ~L~pie~~L~~lP~i~l~d~~~~~i~nG~~i~l 914 (1527)
.|+|++.++.++|.+.+++.....+.||+.+..
T Consensus 214 ~LlPle~aL~~LP~V~Lde~aa~~I~nG~~L~~ 246 (300)
T PRK04270 214 VILPMEYALSHLPKIIIKDSAVDAIAHGAPLYA 246 (300)
T ss_pred hcCCHHHHhhhCCceEECHHHHHHHHcCCcccc
Confidence 699999999999999999999999999998865
|
|
| >TIGR00425 CBF5 rRNA pseudouridine synthase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-54 Score=496.27 Aligned_cols=219 Identities=34% Similarity=0.538 Sum_probs=204.3
Q ss_pred eeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCC
Q psy1758 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 741 (1527)
Q Consensus 662 ~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d 741 (1527)
.+|||+||||.||||||||+++||+|+.+||||+|||||+||||||||+|+|||+++|++..+|+|+++++||.
T Consensus 33 ~~G~l~i~KP~g~tS~~~v~~vr~~~~~kkvGH~GTLDP~A~GvL~v~~G~aTkl~~~~~~~~K~Y~~~v~lG~------ 106 (322)
T TIGR00425 33 SYGVVNLDKPSGPSSHEVVAWVRRILNVEKTGHGGTLDPKVTGVLPVCIERATRLVKSLQEAPKEYVCLMRLHR------ 106 (322)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHhcccccCCCCCCCCCCceEEEEEEChHhhccHHhccCCCEEEEEEEECC------
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999993
Q ss_pred CcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeEE
Q psy1758 742 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLT 821 (1527)
Q Consensus 742 ~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~~ 821 (1527)
+++.++|+++|++|+|+++|+||+|||+| +++|.++||++++++|+.|.++
T Consensus 107 ------------~~~~~~l~~~l~~f~g~i~Q~pP~~SA~k-----------------~~~r~v~I~~~~l~~~~~~~~~ 157 (322)
T TIGR00425 107 ------------DAKEEDILRVLKEFTGRIFQRPPLKSAVK-----------------RQLRVRTIYESELLEKDGKDVL 157 (322)
T ss_pred ------------CCCHHHHHHHHHHcCCcEEeeCChheEEe-----------------ccCeEEEEEEEEEEEecCCeEE
Confidence 26889999999999999999999999998 3589999999999999999999
Q ss_pred EEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhh----hhh----hccccCccccccccc
Q psy1758 822 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYS----EYE----RISSLIPIDILLSSF 893 (1527)
Q Consensus 822 ~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~----~~~----~~~~L~pie~~L~~l 893 (1527)
|+|+||+||||||||+|||.+|||+|||+.|||+++|+|++++|++++++.+.. ... ..+.|+|++.++.++
T Consensus 158 ~~v~cskGTYIRsL~~Dig~~Lg~~a~~~~L~R~~~g~f~~~~a~~l~~l~~~~~~~~~~~~~~~l~~~l~p~~~~l~~l 237 (322)
T TIGR00425 158 FRVSCEAGTYIRKLCVDIGEALGTGAHMQELRRTRSGCFGEDDMVTLHDLLDAYVFWKEDGDESYLRRVIKPMEYALRHL 237 (322)
T ss_pred EEEEeCCCcChHHHHHHHHHHHCCCEEEEEeEeEEECCccccccccHHHHHHhhhhhhcccchhhHhhhcCCHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999997542 111 123699999999999
Q ss_pred ceeeecccccceeccCcccccc
Q psy1758 894 GIIYLSDLLSKRFLHGQNLFLS 915 (1527)
Q Consensus 894 P~i~l~d~~~~~i~nG~~i~ls 915 (1527)
|.+.+++.....+.||+.+...
T Consensus 238 P~V~Vd~~~a~~I~NG~~I~~p 259 (322)
T TIGR00425 238 KRVVVKDSAVDAICHGADLMVR 259 (322)
T ss_pred CceEeCHHHHHHHHCCCccccc
Confidence 9999999999999999988653
|
This family, found in archaea and eukaryotes, includes the only archaeal proteins markedly similar to bacterial TruB, the tRNA pseudouridine 55 synthase. However, among two related yeast proteins, the archaeal set matches yeast YLR175w far better than YNL292w. The first, termed centromere/microtubule binding protein 5 (CBF5), is an apparent rRNA pseudouridine synthase, while the second is the exclusive tRNA pseudouridine 55 synthase for both cytosolic and mitochondrial compartments. It is unclear whether archaeal proteins found by this model modify tRNA, rRNA, or both. |
| >cd02572 PseudoU_synth_hDyskerin PseudoU_synth_hDyskerin_Like: Pseudouridine synthase, human dyskerin like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=447.29 Aligned_cols=176 Identities=38% Similarity=0.633 Sum_probs=170.4
Q ss_pred eeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCCC
Q psy1758 663 HGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDI 742 (1527)
Q Consensus 663 ~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d~ 742 (1527)
||||+||||.|||||||++++||.++.+||||+|||||+||||||+|+|++||+++|++..+|+|+++++||..
T Consensus 2 ~g~l~i~Kp~g~tS~~~v~~~k~~~~~kkvGH~GTLDp~A~GvLiv~~g~~Tk~~~~~~~~~K~Y~a~v~~g~~------ 75 (182)
T cd02572 2 YGVINLDKPSGPSSHEVVAWIKRILGVEKTGHSGTLDPKVTGCLPVCIDRATRLVKSQQEAGKEYVCVMRLHDD------ 75 (182)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhCCCccCcCCCCCCcCeeEEEEEECHHhhhhHHHhCCCCEEEEEEEECCc------
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred cccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC--CeE
Q psy1758 743 EGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI--PYL 820 (1527)
Q Consensus 743 ~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~--~~~ 820 (1527)
++.++|++++++|+|+++|+||+|||+| +++|+++||++++++|+. |.+
T Consensus 76 ------------it~e~l~~~l~~f~G~i~Q~pP~~SA~K-----------------~~~R~v~I~~i~l~~~~~~~~~~ 126 (182)
T cd02572 76 ------------VDEEKVRRVLEEFTGAIFQRPPLISAVK-----------------RQLRVRTIYESKLLEYDGERRLV 126 (182)
T ss_pred ------------CCHHHHHHHHHHCCCcEEeeCCHhheec-----------------CCceEEEEEEEEEEEEcCCCcEE
Confidence 6899999999999999999999999998 368999999999999988 999
Q ss_pred EEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCcc-ccccccChhHHHh
Q psy1758 821 TLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKL-TLDKCLNIDTIIK 873 (1527)
Q Consensus 821 ~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f-~~~~a~~l~~l~~ 873 (1527)
+|+|+||+||||||||+|||.+|||+|||++|||+++|+| ++++|++++++.+
T Consensus 127 ~~~v~cs~GTYIRsL~~dlg~~Lg~~a~l~~L~R~~~G~f~~~~~~~~~~~~~~ 180 (182)
T cd02572 127 LFRVSCEAGTYIRTLCVHIGLLLGVGAHMQELRRTRSGPFSEEDNMVTLHDVLD 180 (182)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHCCCeEEEEEEeEEEcCcCchhccccHHHHHh
Confidence 9999999999999999999999999999999999999999 9999999999954
|
This group consists of eukaryotic and archeal pseudouridine synthases similar to human dyskerin, Saccharomyces cerevisiae Cbf5, and Drosophila melanogaster Mfl (minifly protein). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactor is required. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. D. melanogaster mfl hosts in its fourth intron, a box H/AC snoRNA gene. In addition dyskerin is likely to have a structural role in the telomerase complex. Mutations in human dyskerin cause X-linked dyskeratosis congenitas. Mutations in Drosophila Mfl r |
| >PF01509 TruB_N: TruB family pseudouridylate synthase (N terminal domain); InterPro: IPR002501 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-49 Score=406.27 Aligned_cols=149 Identities=45% Similarity=0.750 Sum_probs=138.9
Q ss_pred HHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCCCcccEEeecCCCCCCHHHHHHH
Q psy1758 684 KYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKI 763 (1527)
Q Consensus 684 ~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d~~g~v~~~~~~~~~~~~~~~~~ 763 (1527)
||+++.+||||+|||||+||||||+|+|+|||+++||+..+|+|+++++||.+|||+|++|+|++++++.|++.++|+++
T Consensus 1 r~~~~~~KvGH~GTLDP~AsGvL~v~vg~~Tkl~~~l~~~~K~Y~~~~~lG~~TdT~D~~G~v~~~~~~~~it~e~l~~~ 80 (149)
T PF01509_consen 1 RRILGIKKVGHGGTLDPFASGVLVVGVGKATKLLSYLQNSDKEYVATIRLGVETDTYDIEGEVTETKPYDHITEEDLEKV 80 (149)
T ss_dssp HHHTTBSSEEESS-SSTT-EEEEEEEEGGGGGGHHHHTTSEEEEEEEEEESSEETTSBTTSSEEEE---TT--HHHHHHH
T ss_pred CcccCcceeccccccCCcceEEEEEEECCcchHHHHhhccCCEEEEEEEEEEEeCCcceeeeEEEeeccccCCHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeEEEEEEecccccH
Q psy1758 764 LINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYI 832 (1527)
Q Consensus 764 l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~~~~v~cs~gtYi 832 (1527)
|++|+|+++|.||+|||+|+||||||+|||+|+++|+++|+|+||+|++++|+.|.|+|+|+||+||||
T Consensus 81 l~~f~G~~~Q~pP~ySAvki~G~raY~lAR~G~~v~~~~r~v~I~~i~l~~~~~~~~~~~v~cs~GTYi 149 (149)
T PF01509_consen 81 LAKFQGEIEQVPPMYSAVKINGKRAYELARKGEEVELPPRPVTIYSIELLSFNPPEFTFEVHCSKGTYI 149 (149)
T ss_dssp HHHTSEEEEES-SSSSSSECTTCEHHHHHHTTSSTSSS-EEEEEEEEEEEEEETTEEEEEEEECTTTTH
T ss_pred HHhCcCCEeeeCchheeEcCCCccHHHHHHCCCccCCCCeeEEEEEEEEEEEcCCeEEEEEEEcCcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999997
|
Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. This entry represents pseudouridine synthase TruB, as well as Cbf5p that modifies rRNA [].; GO: 0006396 RNA processing; PDB: 1SGV_B 2AUS_C 3UAI_A 3U28_A 2RFK_A 3LWV_A 3HJY_A 3HAX_A 3LWO_A 3HAY_A .... |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-47 Score=429.11 Aligned_cols=362 Identities=24% Similarity=0.351 Sum_probs=310.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccc------eecchhhhhcccceeEeeeeEEEEecCeEEEEEeCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA------RIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTP 993 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~------~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTP 993 (1527)
.+.|++|||.|||+|||||.+.||...|+|...+.+.. ...|+++.|++|||++.++...|+|+++.+||+|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 56789999999999999999999998888877766653 578999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh-----
Q psy1758 994 GHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL----- 1068 (1527)
Q Consensus 994 Gh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l----- 1068 (1527)
||.||+..+.|.|..+|.||.|+||..|+.+||+.+++.|+..++|++-||||+|++..+|-+.++++.+.+.--
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pit 169 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPIT 169 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceeccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998876200
Q ss_pred -------------------------ccc-------------c------------cc-----------------------c
Q psy1758 1069 -------------------------CAT-------------E------------EQ-----------------------L 1075 (1527)
Q Consensus 1069 -------------------------~~~-------------~------------~~-----------------------~ 1075 (1527)
+.. . ++ -
T Consensus 170 WPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G~ 249 (528)
T COG4108 170 WPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAGE 249 (528)
T ss_pred ccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcCC
Confidence 000 0 00 0
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC---------CCCCCceeEEEeeecc---ccCceEEEEEe
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD---------NSNNPLQLQIISLEYS---SYLGKIGIGRI 1143 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~---------~~~~p~~~~V~~~~~d---~~~G~v~~grV 1143 (1527)
-.||+++||+.+. |++.+|++++++.|+|.. ..+..|.++|||+..+ .+..|++|.||
T Consensus 250 ~TPVFFGSAl~NF----------GV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv 319 (528)
T COG4108 250 LTPVFFGSALGNF----------GVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRV 319 (528)
T ss_pred ccceEehhhhhcc----------CHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEe
Confidence 1589999999998 999999999999999963 2345699999998764 47889999999
Q ss_pred ecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCCCCCCccCCC
Q psy1758 1144 LSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEP 1223 (1527)
Q Consensus 1144 ~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~~~~~P 1223 (1527)
.||....|+.+...++ | +..+++.-..|++.+|..+++|.|||||++..-..++||||++..+ ...+++++...|
T Consensus 320 ~SGkferGMkv~h~rt--G--K~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~~IGDT~t~Ge-~l~f~giP~FaP 394 (528)
T COG4108 320 CSGKFERGMKVTHVRT--G--KDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTFTEGE-KLKFTGIPNFAP 394 (528)
T ss_pred ccccccCCceeeeeec--C--CceEecchHhhhhhhhhhhhhccCCCeEeccCCCceeecceeecCc-eeeecCCCCCCH
Confidence 9999999999999888 4 4678999999999999999999999999998877899999999874 445566665668
Q ss_pred ceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhc-CcEEEEe
Q psy1758 1224 TLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVS 1302 (1527)
Q Consensus 1224 ~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs 1302 (1527)
-+.+.+...+. +...++.++|.++++|- ++++-....... .+++..|.||.+|+.+||+.| |+|+.+.
T Consensus 395 E~frrvr~kd~---------~K~Kql~Kgl~QL~eEG-avQ~f~p~~~~d-~IlGAVG~LQFeV~~~RL~~EY~ve~~~e 463 (528)
T COG4108 395 ELFRRVRLKDP---------LKQKQLKKGLEQLAEEG-AVQVFKPLDGND-LILGAVGQLQFEVVQARLKNEYNVEAVFE 463 (528)
T ss_pred HHHHHHhcCCh---------HHHHHHHHHHHHHhhcC-eeEEEecCCCCC-ceEEeeeeeehHHHHHHHHhhhCCeEEEe
Confidence 88888876542 24578999999999885 677777666677 999999999999999999976 9988876
Q ss_pred cCeee
Q psy1758 1303 RPRVI 1307 (1527)
Q Consensus 1303 ~P~V~ 1307 (1527)
+-.+.
T Consensus 464 ~~~~~ 468 (528)
T COG4108 464 PVNFS 468 (528)
T ss_pred eccce
Confidence 54433
|
|
| >KOG0468|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=405.09 Aligned_cols=467 Identities=24% Similarity=0.330 Sum_probs=365.6
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCc-ccccccccceecchhhhhcccceeEeeeeEEEEe-----cCeEEEEEe
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGT-FRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-----NGTRINIID 991 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~-~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-----~~~~iniiD 991 (1527)
.+..+|||+++||-.||||+|++.|..++.. +.+.....-++.|....|++||.+|.+....+.. +.+.+||+|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 4678999999999999999999999998763 2222222338999999999999999999888765 357899999
Q ss_pred CCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCC-------CC----hhhhHHH
Q psy1758 992 TPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN-------AR----PEWVVDA 1060 (1527)
Q Consensus 992 TPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~-------a~----~~~v~~~ 1060 (1527)
||||.+|..|+.++++.+|+|+||||+.+|++-+|+.+++.+-+..+|+.+|+||+|+.- .+ ...++++
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii~~ 283 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHIIDE 283 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999731 11 1223333
Q ss_pred HHHHHhhhccccc----ccCCcEEEeccccCCcC---------------CCc----------------------------
Q psy1758 1061 TFDLFDKLCATEE----QLDFPVIYTSALHGYAN---------------ENS---------------------------- 1093 (1527)
Q Consensus 1061 ~~~~~~~l~~~~~----~~~~pvi~~SA~~g~~~---------------~~~---------------------------- 1093 (1527)
+..++......+. ++.--+++.|.+-|++- .+.
T Consensus 284 iN~~is~~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~kk~~~~~ 363 (971)
T KOG0468|consen 284 INNLISTFSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKKPPDGS 363 (971)
T ss_pred hcchhhhcccccccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccccccccccCCCCCc
Confidence 3332222222111 11123566666666420 000
Q ss_pred -----------------------------------------ccccCCChh---------------HHHHHHhhcCCCC--
Q psy1758 1094 -----------------------------------------KARQGNMIP---------------LFEAILKYVPVHK-- 1115 (1527)
Q Consensus 1094 -----------------------------------------~~~~~gi~~---------------Ll~~i~~~lp~p~-- 1115 (1527)
++...++.+ +.+++.+++|+|.
T Consensus 364 ~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~lvc~~ffg~~sgfvd~~v~hi~sP~e~ 443 (971)
T KOG0468|consen 364 GSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRLVCKSFFGIESGFVDMPVEHIPSPREN 443 (971)
T ss_pred ccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHHHHHHHhccchhhhhHhhHhhcCChhhh
Confidence 000112233 4456678888884
Q ss_pred -----------------------CCCCCCceeEEEeeec-cccCceEEEEEeecCccccCCEEEEecCCC-----CCcCc
Q psy1758 1116 -----------------------DNSNNPLQLQIISLEY-SSYLGKIGIGRILSGRIKSLQDVVIMNGPD-----DKPNK 1166 (1527)
Q Consensus 1116 -----------------------~~~~~p~~~~V~~~~~-d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~-----g~~~~ 1166 (1527)
+++++|+.+.+++++. ++..--.++|||+||+++.|+.|.+...+. +....
T Consensus 444 a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vlgeny~leDEeD~~~ 523 (971)
T KOG0468|consen 444 AARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLGENYSLEDEEDMVI 523 (971)
T ss_pred hccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecceeecceeeEeeccccCCCccccee
Confidence 3567999999999875 444556789999999999999999986641 11122
Q ss_pred ceeeeEEEeecCceeEeeeeecCCEEEEecceecc-cCCeeeCCCCCC---CCCCCc-cCCCceeEEEEecCCCCCCCCC
Q psy1758 1167 AKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC-IGSTICDPSKPN---GLPMLN-IDEPTLTINFMVNNSPLAGREG 1241 (1527)
Q Consensus 1167 ~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~-iGdTi~~~~~~~---~l~~~~-~~~P~l~~~~~~~~~p~~g~e~ 1241 (1527)
..|+++..+.+..+.+++.|.||.+|.|.|++... ..-||++.+..+ -++++. +.+|++.+++. |+...|
T Consensus 524 ~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t~~VvKiave----P~nPsE- 598 (971)
T KOG0468|consen 524 CEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKVAVE----PLNPSE- 598 (971)
T ss_pred eeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchhcCCcceEEEEec----cCChhh-
Confidence 56899999999999999999999999999998643 478888765443 344443 45788777775 444555
Q ss_pred ccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhc--CcEEEEecCeeeEEEe--------
Q psy1758 1242 KFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE--GYELSVSRPRVIFKTL-------- 1311 (1527)
Q Consensus 1242 ~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrre--g~ev~vs~P~V~yre~-------- 1311 (1527)
.+||.++|.+....-|.+...- +++|+ ..+.|-|||.|+.++..||.- .+|+.|+.|-|.|-|+
T Consensus 599 ----LPKmldgLrKinKsYPl~~tkV-EESGE-HvilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~Et~vetssik 672 (971)
T KOG0468|consen 599 ----LPKMLDGLRKINKSYPLVITKV-EESGE-HVILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFCETVVETSSIK 672 (971)
T ss_pred ----hhHHHHHHHhhcccCCcEEEeh-hhcCc-eEEecCchhhHHHHHHHHHHHHhhhceeecCceeEEEEeeecccchh
Confidence 4899999999999998775444 46788 899999999999999999963 8999999999999985
Q ss_pred ----------------------------c--------------------------------------c------------
Q psy1758 1312 ----------------------------N--------------------------------------G------------ 1313 (1527)
Q Consensus 1312 ----------------------------~--------------------------------------g------------ 1313 (1527)
+ |
T Consensus 673 cfaetpnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~GpNiL~dDTLp~e 752 (971)
T KOG0468|consen 673 CFAETPNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNILLDDTLPTE 752 (971)
T ss_pred hhccCCCccCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCCCCCCCceeecCcCcch
Confidence 0 0
Q ss_pred ------------------------------------------------------------------------eEeeeeEE
Q psy1758 1314 ------------------------------------------------------------------------ELYEPYEN 1321 (1527)
Q Consensus 1314 ------------------------------------------------------------------------~llEP~~~ 1321 (1527)
.++||||.
T Consensus 753 vdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~YsafL~AtPrLmEP~Y~ 832 (971)
T KOG0468|consen 753 VDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPVYL 832 (971)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHHHHHHhhchhhcCceEE
Confidence 48999999
Q ss_pred EEEEecCcchHHHHHHHhccCCeEeeeeec-CCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1322 LFVDIEEINQGIIMQKLNYRGGDLKNIEIN-EKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1322 ~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~-~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|+|.+|.+.+..|.+.|++|||++..-.+. +.....+.+.+|+-+.+||-++||..|+|+|.+.+.|+||++++
T Consensus 833 VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C~~vF~HW~~VP 907 (971)
T KOG0468|consen 833 VEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFCLSVFDHWRIVP 907 (971)
T ss_pred EEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCcccceeeeccchhHHHHhhhhcccCC
Confidence 999999999999999999999999887665 33467899999999999999999999999999999999999998
|
|
| >KOG0467|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=413.47 Aligned_cols=467 Identities=25% Similarity=0.357 Sum_probs=368.6
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCC
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA 996 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~ 996 (1527)
.+...+|||++++|+|||||||++.|+...|.+...-...-++||+.+.|+.||||+.++..+...+++.+|+||+|||.
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 34678999999999999999999999999998887655566999999999999999999999988899999999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCC----CCChhhhH-------HHHHHHH
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS----NARPEWVV-------DATFDLF 1065 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~----~a~~~~v~-------~~~~~~~ 1065 (1527)
||.+++.++.+.+|+++++||+.+|+.+||..+++++-..|+.+++|+||||+. ...+.+.. +++....
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~vn~~i 163 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQVNGVI 163 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHHhhhHH
Confidence 999999999999999999999999999999999999999999999999999963 22333332 3332222
Q ss_pred hh-------hcccc----------cccCCcEEEeccccCCcCC-----------------------------Cccc----
Q psy1758 1066 DK-------LCATE----------EQLDFPVIYTSALHGYANE-----------------------------NSKA---- 1095 (1527)
Q Consensus 1066 ~~-------l~~~~----------~~~~~pvi~~SA~~g~~~~-----------------------------~~~~---- 1095 (1527)
.. +.... .+-+--++++||..||+.- +...
T Consensus 164 ~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lwgd~y~~~ktk~I~ 243 (887)
T KOG0467|consen 164 GQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLWGDRYIDPKTKRIC 243 (887)
T ss_pred HHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhhhhccceeecchhhhhh
Confidence 21 11111 1112348999999998610 0000
Q ss_pred -------c--------------------cC-------------CC-------hhHHHH---------------HHhhcCC
Q psy1758 1096 -------R--------------------QG-------------NM-------IPLFEA---------------ILKYVPV 1113 (1527)
Q Consensus 1096 -------~--------------------~~-------------gi-------~~Ll~~---------------i~~~lp~ 1113 (1527)
. .. |+ ..+++. .+.++|.
T Consensus 244 ~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~~im~~wLPls~avll~a~~~lp~ 323 (887)
T KOG0467|consen 244 EGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLDAIMSTWLPLSDAVLLTVVYKLPD 323 (887)
T ss_pred cccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHHHHHHHHHHhhcccccchHHHHHHhcCC
Confidence 0 00 00 112222 2234454
Q ss_pred CC----------------------------CCCCCCceeEEEeeeccc-----cCceEEEEEeecCccccCCEEEEecCC
Q psy1758 1114 HK----------------------------DNSNNPLQLQIISLEYSS-----YLGKIGIGRILSGRIKSLQDVVIMNGP 1160 (1527)
Q Consensus 1114 p~----------------------------~~~~~p~~~~V~~~~~d~-----~~G~v~~grV~sG~lk~Gd~v~~~~~~ 1160 (1527)
|- ++.++|..++|.++..-+ ..--++++|||||+++.||.+++...
T Consensus 324 pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~~ari~sgTlr~g~~v~v~~p- 402 (887)
T KOG0467|consen 324 PIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLAFARIFSGTLRVGQVVYVLGP- 402 (887)
T ss_pred HHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhheeeeeeccCceeeccEeeecCC-
Confidence 41 235678888888865443 22247999999999999999999866
Q ss_pred CCC----cCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCC-CCCCccCCCceeEEEEecCCC
Q psy1758 1161 DDK----PNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNG-LPMLNIDEPTLTINFMVNNSP 1235 (1527)
Q Consensus 1161 ~g~----~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~-l~~~~~~~P~l~~~~~~~~~p 1235 (1527)
++. ....+|.++|.++|...++.+++.+|++++|.|-+-+--.-|+|+.....| ++...-..|.+.|++.+.+ |
T Consensus 403 d~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g~~~vlks~TL~s~~~~~p~~~~~f~~tp~vrvaiep~~-p 481 (887)
T KOG0467|consen 403 DPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGGAGIVLKSATLCSKVPCGPNLVVNFQITPIVRVAIEPDD-P 481 (887)
T ss_pred CCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecccceEeccceecccCCCcceeeeeeeeeeEEEEEeecCC-h
Confidence 332 234689999999999999999999999999998333445788888643322 2312223688999987543 2
Q ss_pred CCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHh-cCcEEEEecCeeeEEEec--
Q psy1758 1236 LAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRR-EGYELSVSRPRVIFKTLN-- 1312 (1527)
Q Consensus 1236 ~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrr-eg~ev~vs~P~V~yre~~-- 1312 (1527)
+ ..++|.+.|.-+...||++++..+ +.++ +.+..-||+||+-++..|+. .++++.+++|.|+||||-
T Consensus 482 ---~-----em~~L~~glkll~~adp~v~i~v~-~~gE-hvl~~aGevhlerc~kDL~efa~i~i~vSeP~vpfrET~~e 551 (887)
T KOG0467|consen 482 ---D-----EMDKLVEGLKLLNQADPFVKIRVE-ENGE-HVLVTAGEVHLERCLKDLKEFAKIEISVSEPLVPFRETIIE 551 (887)
T ss_pred ---H-----HhHHHHHHHHhhcccchhhHHHHh-hccc-eeeeeccHHHHHHHHHHHhhhhceEEEecCCccchhhhccc
Confidence 2 357899999999999999998776 5688 89999999999999999987 499999999999999850
Q ss_pred --------------------------------------------------------------------------------
Q psy1758 1313 -------------------------------------------------------------------------------- 1312 (1527)
Q Consensus 1313 -------------------------------------------------------------------------------- 1312 (1527)
T Consensus 552 ~s~l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k~~~~e~ls~~~s~~~~ 631 (887)
T KOG0467|consen 552 DSDLLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQKGSFEENLSLLISLERL 631 (887)
T ss_pred cchhhhhhhcCcccccccccceeEEeeecccccceeccccccchhccchhccccccccccccccccccccccHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy1758 1313 -------------------------------------------------------------------------------- 1312 (1527)
Q Consensus 1313 -------------------------------------------------------------------------------- 1312 (1527)
T Consensus 632 ~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfql~~~sGPlc~Ep~~g~~~~~ 711 (887)
T KOG0467|consen 632 YEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQLATSSGPLCNEPMQGICFVL 711 (887)
T ss_pred hhccccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHHHHHHHhhhHhhhhccCcccccCcccEEEEe
Confidence
Q ss_pred ---------------c-------------------eEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeec-CCcEEE
Q psy1758 1313 ---------------G-------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEIN-EKERVR 1357 (1527)
Q Consensus 1313 ---------------g-------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~-~~~~~~ 1357 (1527)
| .+..|||.+.|.+-.|+.|+|+.-|++|+|++++-+.. +.+...
T Consensus 712 es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkVLsEem~EgT~~F~ 791 (887)
T KOG0467|consen 712 ESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKVLSEEMKEGTGFFI 791 (887)
T ss_pred eccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhcchhhhhhhhCCCCcEE
Confidence 0 37889999999999999999999999999999976654 567889
Q ss_pred EEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1358 LEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1358 l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
+++.+|+.|-+||..++|-.|+|.|+..+.|+||+-.+
T Consensus 792 V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId 829 (887)
T KOG0467|consen 792 VTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVID 829 (887)
T ss_pred EEEEeeeeccccHHHHHhhccccccchhhhccccEEec
Confidence 99999999999999999999999999999999999876
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=355.84 Aligned_cols=283 Identities=29% Similarity=0.358 Sum_probs=240.1
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccc---------------cccccceecchhhhhcccceeEeeeeEEEEecCe
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRK---------------NQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~---------------~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~ 985 (1527)
...|++++||+|||||||+.+|+++.|.+++ ..+.-+|+||+.+.|||||+|++.+...|+.+.+
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 4569999999999999999999999998874 1123359999999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC-------CChhHHHHHHHHHHcCCccE-EEEeccCCCCCC---h
Q psy1758 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-------PMPQTRFVTRKALKLGFKPI-VVVNKIDRSNAR---P 1054 (1527)
Q Consensus 986 ~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G-------~~~qt~~~~~~~~~~glp~I-vviNKiD~~~a~---~ 1054 (1527)
.++|+|||||.||..+|..+.++||++||||||..| +..||++|+-+++.+|+..+ |++||||..+++ +
T Consensus 86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf 165 (428)
T COG5256 86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERF 165 (428)
T ss_pred eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHH
Confidence 999999999999999999999999999999999998 88999999999999999875 559999999875 5
Q ss_pred hhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCc--ccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeecc
Q psy1758 1055 EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENS--KARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYS 1132 (1527)
Q Consensus 1055 ~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~--~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d 1132 (1527)
+++.+++..++..++.... ++|++++||.+|.+.... ..++..-..||++|- .+..|....+.||++.|.+++.-
T Consensus 166 ~ei~~~v~~l~k~~G~~~~--~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p~~~~d~Plr~pI~~v~~i 242 (428)
T COG5256 166 EEIVSEVSKLLKMVGYNPK--DVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPERPLDKPLRLPIQDVYSI 242 (428)
T ss_pred HHHHHHHHHHHHHcCCCcc--CCeEEecccccCCcccccCcCCcCccCChHHHHHh-ccCCCCCCCCCCeEeEeeeEEEe
Confidence 6777777775555555443 688999999999743221 123445567888885 88888888999999999999988
Q ss_pred ccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEE--Eecc--eecccCCeeeC
Q psy1758 1133 SYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL--ITGI--EEICIGSTICD 1208 (1527)
Q Consensus 1133 ~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIva--i~gl--~~~~iGdTi~~ 1208 (1527)
...|.+..|||.+|.|++||.|++.+. + ....|+++... ..+++.|.|||.|. +.|+ +|++.||.+++
T Consensus 243 ~~~gtv~vGrVEsG~i~~g~~v~~~p~--~--~~~evksie~~----~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~ 314 (428)
T COG5256 243 SGIGTVPVGRVESGVIKPGQKVTFMPA--G--VVGEVKSIEMH----HEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGH 314 (428)
T ss_pred cCCceEEEEEEeeeeeccCCEEEEecC--c--ceEEEeeeeec----ccccccCCCCCeEEEEecCCchhccCCccEecc
Confidence 889999999999999999999999987 2 45678887655 57899999999995 4565 46999999999
Q ss_pred CCCCCC
Q psy1758 1209 PSKPNG 1214 (1527)
Q Consensus 1209 ~~~~~~ 1214 (1527)
+++|..
T Consensus 315 ~~n~~t 320 (428)
T COG5256 315 SDNPPT 320 (428)
T ss_pred CCCCcc
Confidence 888744
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=370.06 Aligned_cols=283 Identities=28% Similarity=0.411 Sum_probs=230.3
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
....+||+++||+|||||||+++|++..+...+......+.+|.++.|++||+|+++....+.+++++++|||||||.+|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 34568999999999999999999996543321111112247999999999999999998888888999999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCCCCC--hhhhHHHHHHHHhhhccccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
..++.++++.+|+++||||+.+|+++||++++..+..+|+|. |+|+||+|+.+.. .+.+.+++.+.+...+... -
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~--~ 166 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPG--D 166 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCc--C
Confidence 999999999999999999999999999999999999999995 6789999986421 2233445666554443321 1
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEE
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVV 1155 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~ 1155 (1527)
.+|++++||++|....+ ....++..|++.+.+++|.|..+.++||+|+|++++++++.|.+++|||.+|+|++||+|+
T Consensus 167 ~~~ii~vSa~~g~~~~~--~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~ 244 (394)
T PRK12736 167 DIPVIRGSALKALEGDP--KWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVE 244 (394)
T ss_pred CccEEEeeccccccCCC--cchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEE
Confidence 46899999999842211 1113678999999999998888888999999999999999999999999999999999999
Q ss_pred EecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecce--ecccCCeeeCCCC
Q psy1758 1156 IMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGIE--EICIGSTICDPSK 1211 (1527)
Q Consensus 1156 ~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~iGdTi~~~~~ 1211 (1527)
+++. +.....+|.+|+.+ +.++++|.|||+|++ .|++ ++..||+||+++.
T Consensus 245 i~p~--~~~~~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~~ 298 (394)
T PRK12736 245 IVGI--KETQKTVVTGVEMF----RKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPGS 298 (394)
T ss_pred EecC--CCCeEEEEEEEEEC----CEEccEECCCCEEEEEECCCcHHhCCcceEEecCCC
Confidence 9876 22345789998765 468999999999965 6764 6889999998763
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=370.02 Aligned_cols=285 Identities=27% Similarity=0.378 Sum_probs=233.8
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
....+||+++||+|||||||+++|++..+.+..........+|..+.|++||+|+++....+.+++.+++|+|||||.+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 34568999999999999999999999877665333323357899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCc-cEEEEeccCCCCCC--hhhhHHHHHHHHhhhccccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
..++.+++..+|++++||||.+|+++||++++..+..+++| .|+|+||+|+.+.. .+...+++...+...+... -
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~--~ 166 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPG--D 166 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCC--C
Confidence 99999999999999999999999999999999999999999 55789999997532 2334456666555443322 2
Q ss_pred CCcEEEeccccCCcCCCccc-------c-cCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCc
Q psy1758 1076 DFPVIYTSALHGYANENSKA-------R-QGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGR 1147 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~-------~-~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~ 1147 (1527)
.+|++++||++|++..+... . ..++..|+++|.+.+|+|..+.+.||+|+|++++++++.|++++|||++|+
T Consensus 167 ~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~ 246 (409)
T CHL00071 167 DIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRIERGT 246 (409)
T ss_pred cceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCE
Confidence 47999999999975322111 0 114678999999989988888889999999999999999999999999999
Q ss_pred cccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe--cce--ecccCCeeeCCCC
Q psy1758 1148 IKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GIE--EICIGSTICDPSK 1211 (1527)
Q Consensus 1148 lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~--gl~--~~~iGdTi~~~~~ 1211 (1527)
+++||.|.+++.+ .....+|.+|+.+. .++++|.|||+|+++ +++ ++..||+|++++.
T Consensus 247 l~~Gd~v~i~p~~--~~~~~~VksI~~~~----~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~~ 308 (409)
T CHL00071 247 VKVGDTVEIVGLR--ETKTTTVTGLEMFQ----KTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPGT 308 (409)
T ss_pred EeeCCEEEEeeCC--CCcEEEEEEEEEcC----cCCCEECCCceeEEEEcCCCHHHcCCeEEEecCCC
Confidence 9999999987651 12457899987653 478999999999654 654 6889999998763
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=371.88 Aligned_cols=280 Identities=27% Similarity=0.338 Sum_probs=232.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccc--c-------------ccceecchhhhhcccceeEeeeeEEEEecC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQ--N-------------INARIMDSNEIEKERGITIFSKNCSIEYNG 984 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~--~-------------~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 984 (1527)
...+||+++||+|||||||+++|++.+|.+.+.+ . ..+++||..+.|++||+|++.....++|++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 3458999999999999999999999998776543 1 114789999999999999999999999999
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCC-------hhHHHHHHHHHHcCCcc-EEEEeccCCC-----C
Q psy1758 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPM-------PQTRFVTRKALKLGFKP-IVVVNKIDRS-----N 1051 (1527)
Q Consensus 985 ~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~-------~qt~~~~~~~~~~glp~-IvviNKiD~~-----~ 1051 (1527)
+.++|+|||||.||..++..+++.+|++||||||.+|.+ +||+++|..+..+|+|. |+|+||||+. .
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~ 164 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhH
Confidence 999999999999999999999999999999999999843 79999999999999986 6679999987 3
Q ss_pred CChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCCCCCCCCCceeEEEee
Q psy1758 1052 ARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISL 1129 (1527)
Q Consensus 1052 a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~ 1129 (1527)
++++++.+++++.+...+... ..+|++++||++|.+..+... .+..-..|+++| +.+++|..+.+.||+++|.++
T Consensus 165 ~~~~~i~~ei~~~l~~~g~~~--~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l-~~i~~p~~~~~~plr~~I~~v 241 (447)
T PLN00043 165 ARYDEIVKEVSSYLKKVGYNP--DKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEAL-DQINEPKRPSDKPLRLPLQDV 241 (447)
T ss_pred HHHHHHHHHHHHHHHHcCCCc--ccceEEEEeccccccccccccCCcccchHHHHHHH-hhcCCCccccCCCcEEEEEEE
Confidence 456777888888777665432 246899999999974332111 111113577777 457778777889999999999
Q ss_pred eccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecc--eecccCCe
Q psy1758 1130 EYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI--EEICIGST 1205 (1527)
Q Consensus 1130 ~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~iGdT 1205 (1527)
+..++.|+++.|||.+|+|++||.|.+.|. + ...+|.+|..+ ..++++|.|||.|++ .++ .++..|+.
T Consensus 242 ~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~--~--~~~~VksI~~~----~~~v~~a~aGd~v~i~l~~~~~~~i~rG~v 313 (447)
T PLN00043 242 YKIGGIGTVPVGRVETGVIKPGMVVTFGPT--G--LTTEVKSVEMH----HESLQEALPGDNVGFNVKNVAVKDLKRGYV 313 (447)
T ss_pred EEeCCcEEEEEEEEECCEEeeCCEEEEcCC--C--CEEEEEEEEEC----CeEeCEecCCCeEEEEECCCCHhhCCCccE
Confidence 999999999999999999999999999876 3 35789888765 478999999999976 455 46888999
Q ss_pred eeCCC
Q psy1758 1206 ICDPS 1210 (1527)
Q Consensus 1206 i~~~~ 1210 (1527)
||+..
T Consensus 314 l~~~~ 318 (447)
T PLN00043 314 ASNSK 318 (447)
T ss_pred EccCC
Confidence 99864
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=370.07 Aligned_cols=279 Identities=26% Similarity=0.328 Sum_probs=231.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccc---------------cccceecchhhhhcccceeEeeeeEEEEecCe
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERGITIFSKNCSIEYNGT 985 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~---------------~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~ 985 (1527)
...||+++||+|||||||+++|++.+|.+.+.+ +..++++|..+.|++||+|++.....++|+++
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 457999999999999999999999988876533 11136899999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCC-------hhHHHHHHHHHHcCCcc-EEEEeccCCCC-----C
Q psy1758 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPM-------PQTRFVTRKALKLGFKP-IVVVNKIDRSN-----A 1052 (1527)
Q Consensus 986 ~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~-------~qt~~~~~~~~~~glp~-IvviNKiD~~~-----a 1052 (1527)
.++|+|||||.+|..++.++++.+|++||||||.+|++ +||+++|..+..+|+|. |||+||||++. +
T Consensus 86 ~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~ 165 (446)
T PTZ00141 86 YFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQE 165 (446)
T ss_pred EEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhHH
Confidence 99999999999999999999999999999999999984 79999999999999997 57899999643 4
Q ss_pred ChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeee
Q psy1758 1053 RPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLE 1130 (1527)
Q Consensus 1053 ~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~ 1130 (1527)
+++++.+++.+.|..++... ..+|++++||++|.+..+... .+..-..|+++| +.+++|..+.+.||+++|.+++
T Consensus 166 ~~~~i~~~i~~~l~~~g~~~--~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l-~~~~~~~~~~~~p~r~~I~~v~ 242 (446)
T PTZ00141 166 RYDEIKKEVSAYLKKVGYNP--EKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEAL-DTLEPPKRPVDKPLRLPLQDVY 242 (446)
T ss_pred HHHHHHHHHHHHHHhcCCCc--ccceEEEeecccCCCcccCCCCCcccchHHHHHHH-hCCCCCCcCCCCCeEEEEEEEE
Confidence 57778888888776655432 258999999999974322111 111113588887 4566677777899999999999
Q ss_pred ccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe--cc--eecccCCee
Q psy1758 1131 YSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GI--EEICIGSTI 1206 (1527)
Q Consensus 1131 ~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~--gl--~~~~iGdTi 1206 (1527)
..++.|+++.|+|.+|+|++||+|.++|. + ...+|.+|..+. .++++|.|||.|++. ++ .++..||+|
T Consensus 243 ~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~--~--~~~~VksI~~~~----~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl 314 (446)
T PTZ00141 243 KIGGIGTVPVGRVETGILKPGMVVTFAPS--G--VTTEVKSVEMHH----EQLAEAVPGDNVGFNVKNVSVKDIKRGYVA 314 (446)
T ss_pred ecCCceEEEEEEEEcceEecCCEEEEccC--C--cEEEEEEEEecC----cccCEECCCCEEEEEECCCCHHHcCCceEE
Confidence 99999999999999999999999999976 3 457888887663 689999999999764 54 358889999
Q ss_pred eCCC
Q psy1758 1207 CDPS 1210 (1527)
Q Consensus 1207 ~~~~ 1210 (1527)
|+++
T Consensus 315 ~~~~ 318 (446)
T PTZ00141 315 SDSK 318 (446)
T ss_pred ecCC
Confidence 9864
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=365.13 Aligned_cols=281 Identities=28% Similarity=0.386 Sum_probs=227.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
+..+||+++||+|||||||+++|++......+......+.||..+.|++||+|++.....+++++++++|||||||.+|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 45689999999999999999999865322211111123579999999999999999999888889999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccE-EEEeccCCCCCC--hhhhHHHHHHHHhhhcccccccC
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI-VVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~I-vviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
.++.+++..+|+++|||||.+|+++||++++..+..+++|.+ +|+||||+.+.. .+.+.+++.+.+...+.. ...
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~--~~~ 167 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP--GDD 167 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC--ccC
Confidence 999999999999999999999999999999999999999987 579999986532 222334555555443321 124
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEE
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVI 1156 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~ 1156 (1527)
+|++++||++|....+ ....++..|++++.+.+|+|..+.++||+++|++++++++.|.+++|||.+|+|++||.|.+
T Consensus 168 ~~ii~vSa~~g~~g~~--~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i 245 (394)
T TIGR00485 168 TPIIRGSALKALEGDA--EWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEI 245 (394)
T ss_pred ccEEECccccccccCC--chhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEE
Confidence 7999999999863222 11225678999998888888888889999999999999999999999999999999999999
Q ss_pred ecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecc--eecccCCeeeCCC
Q psy1758 1157 MNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI--EEICIGSTICDPS 1210 (1527)
Q Consensus 1157 ~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~iGdTi~~~~ 1210 (1527)
++. ++....+|.+|+.+ +.++++|.|||+|++ .|+ +++..||+||+++
T Consensus 246 ~p~--~~~~~~~VksI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~ 297 (394)
T TIGR00485 246 VGL--KDTRKTTVTGVEMF----RKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPG 297 (394)
T ss_pred ecC--CCCcEEEEEEEEEC----CeEEEEECCCCEEEEEeCCccHHHCCccEEEecCC
Confidence 875 12245789998865 468899999999966 666 4688999999974
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=362.27 Aligned_cols=284 Identities=27% Similarity=0.393 Sum_probs=230.4
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....||+++||+|||||||+++|++......+......+.+|..+.|++||+|++.....+.+++.+++|+|||||.+|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 45689999999999999999999975432221111122578999999999999999999998899999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccE-EEEeccCCCCCC--hhhhHHHHHHHHhhhcccccccC
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI-VVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~I-vviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
.++.+++..+|+++|||||.+|+++||++++..+...++|.+ +|+||+|+.+.. .+.+.+++...+...+... ..
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~--~~ 167 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG--DD 167 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCc--Cc
Confidence 999999999999999999999999999999999999999987 479999996421 2333345555554433211 24
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEE
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVI 1156 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~ 1156 (1527)
+|++++||++|++.........++..|+++|.+.+|+|..+.++||+++|.++++.++.|.++.|||.+|+|++||+|.+
T Consensus 168 ~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i 247 (396)
T PRK12735 168 TPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVEI 247 (396)
T ss_pred eeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEEEE
Confidence 78999999999753211111236789999999999988888889999999999999999999999999999999999999
Q ss_pred ecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecc--eecccCCeeeCCCC
Q psy1758 1157 MNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI--EEICIGSTICDPSK 1211 (1527)
Q Consensus 1157 ~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~iGdTi~~~~~ 1211 (1527)
+|. +.....+|.+|+.+ +.++++|.|||+|++ .|+ +++..|++||+++.
T Consensus 248 ~p~--~~~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~~ 300 (396)
T PRK12735 248 VGI--KETQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGS 300 (396)
T ss_pred ecC--CCCeEEEEEEEEEC----CeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCCC
Confidence 976 22345788888764 478999999999977 566 46889999999753
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=359.42 Aligned_cols=283 Identities=28% Similarity=0.392 Sum_probs=230.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
...+||+++||+|||||||+++|++.............+.||..+.|++||+|+++....+.+++++++|+|||||.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 45689999999999999999999975322111111122478999999999999999998888899999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccE-EEEeccCCCCCC--hhhhHHHHHHHHhhhcccccccC
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI-VVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~I-vviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
.++.+++..+|++++||||.+|+++||++++..+...++|.+ +++||+|+.+.. ++.+.+++...+..++.. .-.
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~--~~~ 167 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP--GDD 167 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC--ccC
Confidence 999999999999999999999999999999999999999986 579999996421 233445666666544432 125
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEE
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVI 1156 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~ 1156 (1527)
.|++++||++|+..........|+..|+++|.+.+|+|....++||+|+|.++++.++.|.++.|+|.+|++++||+|.+
T Consensus 168 ~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i 247 (396)
T PRK00049 168 TPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI 247 (396)
T ss_pred CcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEEEE
Confidence 78999999998642111111236789999999999988888889999999999999999999999999999999999999
Q ss_pred ecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecc--eecccCCeeeCCC
Q psy1758 1157 MNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI--EEICIGSTICDPS 1210 (1527)
Q Consensus 1157 ~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~iGdTi~~~~ 1210 (1527)
++.+ .....+|.+|..+ +.++++|.|||.|++ .|+ +++..|++||+++
T Consensus 248 ~p~~--~~~~~~VksI~~~----~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~ 299 (396)
T PRK00049 248 VGIR--DTQKTTVTGVEMF----RKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPG 299 (396)
T ss_pred eecC--CCceEEEEEEEEC----CcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCC
Confidence 8762 1345789988765 368999999999976 666 4688999999975
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=363.49 Aligned_cols=285 Identities=26% Similarity=0.380 Sum_probs=233.7
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
....+||+++||+|||||||+++|++..+.+..........+|..+.|++||+|++.....+++++++++|||||||.+|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 45679999999999999999999999877665433222357899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCCCCC--hhhhHHHHHHHHhhhccccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
..++.++++.+|+++|||||.+|+++||+++|..+..+|+|. |+|+||||+.+.. ++.+.+++...+...+.. ..
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~--~~ 235 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP--GD 235 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC--cC
Confidence 999999999999999999999999999999999999999994 6789999996521 333444566655544322 13
Q ss_pred CCcEEEeccccCCcCCCcc---c----cc-CCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCc
Q psy1758 1076 DFPVIYTSALHGYANENSK---A----RQ-GNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGR 1147 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~---~----~~-~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~ 1147 (1527)
.+|++++||.+|+...... . .+ .++..|++.|.+..|.|..+.+.||+++|.++++.++.|.++.|+|.+|+
T Consensus 236 ~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~ 315 (478)
T PLN03126 236 DIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGT 315 (478)
T ss_pred cceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeCCceEEEEEEEEcCe
Confidence 5799999999996322000 0 00 13567999998888778777889999999999999999999999999999
Q ss_pred cccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecce--ecccCCeeeCCCC
Q psy1758 1148 IKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGIE--EICIGSTICDPSK 1211 (1527)
Q Consensus 1148 lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~iGdTi~~~~~ 1211 (1527)
|++||.|.++|. +.....+|.+|+.+ +.++++|.|||.|++ .|++ ++..|++||+++.
T Consensus 316 i~~Gd~v~i~p~--~~~~~~~VksI~~~----~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~~ 377 (478)
T PLN03126 316 VKVGETVDIVGL--RETRSTTVTGVEMF----QKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGS 377 (478)
T ss_pred EecCCEEEEecC--CCceEEEEEEEEEC----CeECCEEeCCceeeeeccCCcHHHcCCccEEecCCC
Confidence 999999999876 33345788888765 368999999999976 5654 5888999999753
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=357.03 Aligned_cols=286 Identities=27% Similarity=0.394 Sum_probs=226.7
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
....+||+++||+|||||||+++|++......+........+|..+.|++||+|+++....+++++++++|+|||||.+|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 45678999999999999999999974321111111111126899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCCCCC--hhhhHHHHHHHHhhhccccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
..++.+++..+|+++|||||.+|+++||++++..+...++|. |+++||+|+.+.. .+.+.+++.+.+..++.. ..
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~--~~ 215 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP--GD 215 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC--CC
Confidence 999999999999999999999999999999999999999996 6789999996421 122223444444333321 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEE
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVV 1155 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~ 1155 (1527)
.+|++++||+++....+......++..|++++.+.+|.|..+.++||+|+|.++++.++.|.++.|+|.+|+|++||.|.
T Consensus 216 ~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~ 295 (447)
T PLN03127 216 EIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVE 295 (447)
T ss_pred cceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEE
Confidence 47899999986543333222233578999999999998888888999999999999999999999999999999999999
Q ss_pred EecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecce--ecccCCeeeCCC
Q psy1758 1156 IMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGIE--EICIGSTICDPS 1210 (1527)
Q Consensus 1156 ~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~iGdTi~~~~ 1210 (1527)
+++.+.+.....+|.+|..+. .++++|.|||.|++ .|++ ++..||+||++.
T Consensus 296 i~p~~~~g~~~~~VksI~~~~----~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~~ 350 (447)
T PLN03127 296 IVGLRPGGPLKTTVTGVEMFK----KILDQGQAGDNVGLLLRGLKREDVQRGQVICKPG 350 (447)
T ss_pred EcccCCCCcEEEEEEEEEEEC----cEeCEEcCCCEEEEEeCCCCHHHCCCccEEecCC
Confidence 986521113457899998763 57899999999976 5664 688999999874
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=353.00 Aligned_cols=278 Identities=24% Similarity=0.282 Sum_probs=217.9
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCccccc------------c-----cccceecchhhhhcccceeEeeeeEEEEecCeE
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKN------------Q-----NINARIMDSNEIEKERGITIFSKNCSIEYNGTR 986 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~------------~-----~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~ 986 (1527)
+|+++||+|||||||+++||+.+|.+.+. + +..+|+||..+.|++||+|++.....+.|++++
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 79999999999999999999999987652 1 122579999999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCCCCChhhhHHHHHHHH
Q psy1758 987 INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNARPEWVVDATFDLF 1065 (1527)
Q Consensus 987 iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~~a~~~~v~~~~~~~~ 1065 (1527)
++|||||||.+|..++..++..+|++||||||.+|+++||++++..+..+++|. |+|+||||+.+++ ++.++++.+.+
T Consensus 82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~-~~~~~~i~~~~ 160 (406)
T TIGR02034 82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD-EEVFENIKKDY 160 (406)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccch-HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999875 6689999997654 23344444433
Q ss_pred hhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEe
Q psy1758 1066 DKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRI 1143 (1527)
Q Consensus 1066 ~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV 1143 (1527)
..+........+|++++||++|.+..+... .+.....|++.+ +.++.|....+.||+++|..++...+.+.-..|+|
T Consensus 161 ~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L-~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v 239 (406)
T TIGR02034 161 LAFAEQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEIL-ETVEVERDAQDLPLRFPVQYVNRPNLDFRGYAGTI 239 (406)
T ss_pred HHHHHHcCCCCccEEEeecccCCCCcccccCCCccchhHHHHHH-HhcCCCCCcCCCCcccceEEEeecCCCcEEEEEEE
Confidence 222111111246899999999974332111 111123466665 55677777778999999988764333233367999
Q ss_pred ecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEec--ceecccCCeeeCCCC
Q psy1758 1144 LSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITG--IEEICIGSTICDPSK 1211 (1527)
Q Consensus 1144 ~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~g--l~~~~iGdTi~~~~~ 1211 (1527)
.+|+|++||+|.++|. + ...+|.+|+.+. .++++|.|||.|++.. .+++..||+||+++.
T Consensus 240 ~~G~l~~gd~v~i~P~--~--~~~~VksI~~~~----~~~~~a~~G~~v~l~l~~~~~i~rG~vl~~~~~ 301 (406)
T TIGR02034 240 ASGSVHVGDEVVVLPS--G--RSSRVARIVTFD----GDLEQARAGQAVTLTLDDEIDISRGDLLAAADS 301 (406)
T ss_pred ecceeecCCEEEEeCC--C--cEEEEEEEEECC----cccCEeCCCCEEEEEECCccccCCccEEEcCCC
Confidence 9999999999999986 3 457899998663 4789999999998764 346888999999865
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=357.05 Aligned_cols=281 Identities=29% Similarity=0.374 Sum_probs=229.5
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCccccc------------cc---ccceecchhhhhcccceeEeeeeEEEEecC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKN------------QN---INARIMDSNEIEKERGITIFSKNCSIEYNG 984 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~------------~~---~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 984 (1527)
....||+++||+|||||||+++|++..|.+... +. ..+++||..+.|++||+|++.....+++++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 456899999999999999999999998887643 21 124789999999999999999999999999
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCC--CCChhHHHHHHHHHHcCCc-cEEEEeccCCCCCC---hhhhH
Q psy1758 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVE--GPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR---PEWVV 1058 (1527)
Q Consensus 985 ~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~--G~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~---~~~v~ 1058 (1527)
++++|||||||.+|..++.++++.+|++|+|||+++ ++.+|++.++..+..+++| +++|+||+|+.+.+ ++...
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 163 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVK 163 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999999975 67899999997643 23445
Q ss_pred HHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCc
Q psy1758 1059 DATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLG 1136 (1527)
Q Consensus 1059 ~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G 1136 (1527)
+++.+.+...+... ..+|++++||++|.+..+... .+.....|+++| +.+|+|..+.+.||+++|.++++.++.|
T Consensus 164 ~~i~~~l~~~g~~~--~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l-~~~~~~~~~~~~p~r~~i~~~~~~~g~G 240 (425)
T PRK12317 164 EEVSKLLKMVGYKP--DDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEAL-DNLKPPEKPTDKPLRIPIQDVYSISGVG 240 (425)
T ss_pred HHHHHHHHhhCCCc--CcceEEEeecccCCCccccccCCCcccHHHHHHHH-hcCCCCccccCCCcEEEEEEEEeeCCCe
Confidence 56655554433221 136899999999984332211 111123578876 5678887778899999999999999999
Q ss_pred eEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecce--ecccCCeeeCCCC
Q psy1758 1137 KIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGIE--EICIGSTICDPSK 1211 (1527)
Q Consensus 1137 ~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~iGdTi~~~~~ 1211 (1527)
+++.|+|.+|+|++||.|.++|. + ...+|.+|..+ ..+++.|.|||.|++ .+++ ++..||+||++++
T Consensus 241 ~vv~G~v~~G~v~~Gd~v~i~P~--~--~~~~VksI~~~----~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~~ 311 (425)
T PRK12317 241 TVPVGRVETGVLKVGDKVVFMPA--G--VVGEVKSIEMH----HEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPDN 311 (425)
T ss_pred EEEEEEEeeccEecCCEEEECCC--C--CeEEEEEEEEC----CcccCEECCCCeEEEEECCCCHHHccCccEecCCCC
Confidence 99999999999999999999987 2 35789998765 368999999999976 4553 6788999998754
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=315.31 Aligned_cols=285 Identities=27% Similarity=0.383 Sum_probs=228.6
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
...-||+.|||+|||||||+.+++.............-.-.|..+.|++|||||..+...++..++.+-.+|+|||+||.
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 34579999999999999999999754221111111111234788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccE-EEEeccCCCCC-C-hhhhHHHHHHHHhhhcccccccC
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI-VVVNKIDRSNA-R-PEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~I-vviNKiD~~~a-~-~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
.+|..+..+.|++||||+|++|++|||++|+.++++.|+|.| +|+||+|+.+. + .+.+..++++++...+.. ..+
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~--gd~ 167 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP--GDD 167 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC--CCC
Confidence 999999999999999999999999999999999999999875 56899999763 2 456677788888765543 235
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEE
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVI 1156 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~ 1156 (1527)
.|++..||+........ ....+.+|++++-+++|.|..+.+.||.|+|-+++.-...|.+++|||.+|+|++|+.+.+
T Consensus 168 ~Pii~gSal~ale~~~~--~~~~i~eLm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~evei 245 (394)
T COG0050 168 TPIIRGSALKALEGDAK--WEAKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEI 245 (394)
T ss_pred cceeechhhhhhcCCcc--hHHHHHHHHHHHHhcCCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEE
Confidence 79999999865321111 1224679999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecc--eecccCCeeeCCCCCCC
Q psy1758 1157 MNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI--EEICIGSTICDPSKPNG 1214 (1527)
Q Consensus 1157 ~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~iGdTi~~~~~~~~ 1214 (1527)
..- ....+..++.+..| +...+++.|||-|.+ .|. +++..|..|+.+..-.|
T Consensus 246 vG~--~~~~kttvtgvemf----rk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpgsi~p 301 (394)
T COG0050 246 VGI--KETQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGSIKP 301 (394)
T ss_pred ecc--cccceeEEEhHHHH----HHHHhccccCCCcceEEEeccccceecceEeecCCcccc
Confidence 755 22334556665555 467899999999854 554 47888999998865433
|
|
| >KOG0460|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=323.85 Aligned_cols=290 Identities=27% Similarity=0.359 Sum_probs=234.0
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
..-||+-|||+|||||||..+++.--.......+..-.-.|..++|+.|||||.+....++...+.+--+|+|||+||.+
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK 132 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK 132 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence 34699999999999999999997641111000011112348899999999999998887777889999999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccE-EEEeccCCC-CCC-hhhhHHHHHHHHhhhcccccccCC
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI-VVVNKIDRS-NAR-PEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~I-vviNKiD~~-~a~-~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
+|..+.++.|++||||.|++|+||||++|+-+|++-|++.| ||+||.|.. +++ .+-+.-++++++.+.+... -+.
T Consensus 133 NMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G--d~~ 210 (449)
T KOG0460|consen 133 NMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG--DNT 210 (449)
T ss_pred HhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC--CCC
Confidence 99999999999999999999999999999999999999986 559999997 333 3455567788877666443 357
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEe
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 1157 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~ 1157 (1527)
|++..||+.-....+.+--...+..|++++-+++|.|..+.+.||.+.|-+++..++.|.++.||+.+|+|++||++.+.
T Consensus 211 PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eiv 290 (449)
T KOG0460|consen 211 PVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIV 290 (449)
T ss_pred CeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeecccccCCEEEEe
Confidence 99999998764332332222246789999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEE--Eecce--ecccCCeeeCCCCCCCCCCC
Q psy1758 1158 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL--ITGIE--EICIGSTICDPSKPNGLPML 1218 (1527)
Q Consensus 1158 ~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIva--i~gl~--~~~iGdTi~~~~~~~~l~~~ 1218 (1527)
.. ++..+..|+.|..|. ..+++|.|||-+. +.|++ +++.|..+|.+....+...+
T Consensus 291 G~--~~~lkttvtgiemF~----K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGsvk~~~k~ 349 (449)
T KOG0460|consen 291 GH--NKTLKTTVTGIEMFR----KSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGSVKPHNKF 349 (449)
T ss_pred cc--CcceeeEeehHHHHH----HHHHhcccccceehhhhcCCHHHHhcccEEecCCccccccee
Confidence 65 444567788887774 6799999999985 36664 78999999998875554333
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=347.52 Aligned_cols=283 Identities=24% Similarity=0.292 Sum_probs=220.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccc------------cccc-----cceecchhhhhcccceeEeeeeEEEEe
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRK------------NQNI-----NARIMDSNEIEKERGITIFSKNCSIEY 982 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~------------~~~~-----~~~~~D~~~~E~erGiTi~~~~~~~~~ 982 (1527)
....||+|+||+|||||||+++||+.+|.+.+ .+.. ..|+||..+.|++||+|++.....+.|
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 34579999999999999999999999988765 2221 247999999999999999999999999
Q ss_pred cCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCc-cEEEEeccCCCCCChhhhHHHH
Q psy1758 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNARPEWVVDAT 1061 (1527)
Q Consensus 983 ~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~~~~v~~~~ 1061 (1527)
++++++|||||||.+|..++..++..+|+++|||||.+|+++||++++..+..++++ .|+|+||||+.+++ ++.++++
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~-~~~~~~i 183 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYS-EEVFERI 183 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccch-hHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999975 56789999997654 2333444
Q ss_pred HHHHhhhccccc-ccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceE
Q psy1758 1062 FDLFDKLCATEE-QLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKI 1138 (1527)
Q Consensus 1062 ~~~~~~l~~~~~-~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v 1138 (1527)
.+.+..+..... ....|++++||++|.+..+... .+.....|++ +++.+|+|..+.+.||+++|..++...+..+.
T Consensus 184 ~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~-~L~~i~~~~~~~~~p~r~~I~~v~~~~~~~~g 262 (474)
T PRK05124 184 REDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLE-VLETVDIQRVVDAQPFRFPVQYVNRPNLDFRG 262 (474)
T ss_pred HHHHHHHHHhcCCCCCceEEEEEeecCCCcccccccccccchhhHHH-HHhhcCCCCCCCCCCceeeEEEEEecCCcccc
Confidence 433322111100 1246899999999985433211 1111235666 45778888777889999999887654332233
Q ss_pred EEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEec--ceecccCCeeeCCCCC
Q psy1758 1139 GIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITG--IEEICIGSTICDPSKP 1212 (1527)
Q Consensus 1139 ~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~g--l~~~~iGdTi~~~~~~ 1212 (1527)
..|+|.+|+|++||+|.++|. + ...+|.+|+.+. .++++|.|||.|++.. ..++..||+||+++.+
T Consensus 263 ~~G~V~sG~l~~Gd~v~i~P~--~--~~~~VksI~~~~----~~v~~A~aG~~V~l~L~~~~~i~rG~VL~~~~~~ 330 (474)
T PRK05124 263 YAGTLASGVVKVGDRVKVLPS--G--KESNVARIVTFD----GDLEEAFAGEAITLVLEDEIDISRGDLLVAADEA 330 (474)
T ss_pred eEEEEEeEEEecCCEEEEecC--C--ceEEEEEEEEcC----ccccCcCCCCEEEEEeCCccccCCccEEECCCCC
Confidence 579999999999999999987 3 457899998664 3689999999998764 3468889999997643
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=345.57 Aligned_cols=281 Identities=27% Similarity=0.364 Sum_probs=226.8
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccc---------------cccceecchhhhhcccceeEeeeeEEEEecC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERGITIFSKNCSIEYNG 984 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~---------------~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 984 (1527)
...+||+++||+|||||||+++|++.+|.+.+.. +...+++|..+.|++||+|++.....+.+++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 4568999999999999999999999888765321 1124689999999999999999999999999
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC---CChhHHHHHHHHHHcCCc-cEEEEeccCCCCCCh---hhh
Q psy1758 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG---PMPQTRFVTRKALKLGFK-PIVVVNKIDRSNARP---EWV 1057 (1527)
Q Consensus 985 ~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G---~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~~---~~v 1057 (1527)
+.++|||||||.+|...+..+++.+|+++||||++++ ..+|+..++..+...+++ +|+|+||+|+.+.+. +..
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~ 164 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAI 164 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHH
Confidence 9999999999999999999999999999999999999 888999988888888865 667899999975433 334
Q ss_pred HHHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccC
Q psy1758 1058 VDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYL 1135 (1527)
Q Consensus 1058 ~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~ 1135 (1527)
.+++.+.+...+.. ...+|++++||++|.+..+... .+.....|+++| +.+++|..+.+.||+++|.++++.++.
T Consensus 165 ~~ei~~~~~~~g~~--~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l-~~~~~~~~~~~~p~r~~i~~v~~~~g~ 241 (426)
T TIGR00483 165 KKEVSNLIKKVGYN--PDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEAL-DALEPPEKPTDKPLRIPIQDVYSITGV 241 (426)
T ss_pred HHHHHHHHHHcCCC--cccceEEEeeccccccccccccCCccccchHHHHHH-hcCCCCCCccCCCcEEEEEEEEecCCC
Confidence 45555555443321 1246899999999984332111 111123688888 457777777889999999999999999
Q ss_pred ceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecc--eecccCCeeeCCCC
Q psy1758 1136 GKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI--EEICIGSTICDPSK 1211 (1527)
Q Consensus 1136 G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~iGdTi~~~~~ 1211 (1527)
|+++.|+|.+|+|++||.|.+.|. + ...+|.+|+.+. .++++|.|||+|++ .++ +++..||+|++++.
T Consensus 242 G~vv~G~v~~G~i~~gd~v~i~P~--~--~~~~VksI~~~~----~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~ 313 (426)
T TIGR00483 242 GTVPVGRVETGVLKPGDKVVFEPA--G--VSGEVKSIEMHH----EQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDN 313 (426)
T ss_pred eEEEEEEEccceeecCCEEEECCC--C--cEEEEEEEEECC----cccCEEcCCCEEEEEECCCChhhcccceEEecCCC
Confidence 999999999999999999999876 3 457899988663 57899999999976 555 36889999998754
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=352.76 Aligned_cols=426 Identities=22% Similarity=0.267 Sum_probs=304.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+.++|+|+||+|||||||+++|.... +. ....+|+|.......+.|+++.++|||||||.+|.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~--v~--------------~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~ 351 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTN--VA--------------AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT 351 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC--cc--------------ccccCceeeeccEEEEEECCEEEEEEECCCCccch
Confidence 355799999999999999999996421 11 11247899998888999999999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
..+.++++.+|++|||||+.+|+++||.++|..+...++|+|||+||||+++++++.+..++... .+.......++|+
T Consensus 352 ~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~--~~~~e~~g~~vp~ 429 (787)
T PRK05306 352 AMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEY--GLVPEEWGGDTIF 429 (787)
T ss_pred hHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHh--cccHHHhCCCceE
Confidence 99999999999999999999999999999999999999999999999999888777776665431 1111112234789
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhhc--CCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEe
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKYV--PVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 1157 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l--p~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~ 1157 (1527)
+++||++|. |+++|+++|.... ..+..+++.|++++|+++..+++.|.+++++|++|+|++||.|.+.
T Consensus 430 vpvSAktG~----------GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g 499 (787)
T PRK05306 430 VPVSAKTGE----------GIDELLEAILLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAG 499 (787)
T ss_pred EEEeCCCCC----------CchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEEEEC
Confidence 999999998 9999999987432 2345567889999999999999999999999999999999999874
Q ss_pred cCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceec-ccCCeeeCCCCC------------------------
Q psy1758 1158 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEI-CIGSTICDPSKP------------------------ 1212 (1527)
Q Consensus 1158 ~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~-~iGdTi~~~~~~------------------------ 1212 (1527)
+ +.++|+.+.+.+..++++|.|||+|.|.|++++ .+||||+...+.
T Consensus 500 ~---------~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~ 570 (787)
T PRK05306 500 T---------TYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIAEYRQEKAREKKLARQQR 570 (787)
T ss_pred C---------cEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 2 245555666666678999999999999999998 899999843221
Q ss_pred CCCCCC--ccCCC---ceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCC-------------CCCe
Q psy1758 1213 NGLPML--NIDEP---TLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKH-------------DDSI 1274 (1527)
Q Consensus 1213 ~~l~~~--~~~~P---~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~-------------~~~g 1274 (1527)
..|..+ .+.++ .+.+.+.+... | +.+.|.+.|.++..+++.++|-...- ++.
T Consensus 571 ~~l~~~~~~~~~~~~~~~~~iikad~~------G---s~eai~~~l~~l~~~~v~~~i~~~~vG~it~~Dv~la~~~~a- 640 (787)
T PRK05306 571 VSLENLFEQMKEGEVKELNLIIKADVQ------G---SVEALKDSLEKLSTDEVKVNIIHSGVGAITESDVTLAAASNA- 640 (787)
T ss_pred cCHHHhhhhhhcCCceEEEEEEEeCCc------c---hHHHHHHHHHhhcccCCceEEEeeccCCCCHHHHHHHHhcCC-
Confidence 112222 11122 46777765432 3 45789999999999999999866411 133
Q ss_pred EEEEecchhHHHHHHHHHHhcCcEEEEecCeeeEEEec------ceEeeeeEEEEEEecCcchHHHHHHHh-ccCCeEee
Q psy1758 1275 YEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLN------GELYEPYENLFVDIEEINQGIIMQKLN-YRGGDLKN 1347 (1527)
Q Consensus 1275 ~~v~g~GelhL~vl~e~lrreg~ev~vs~P~V~yre~~------g~llEP~~~~~i~vp~e~~G~v~~~l~-~rrG~~~~ 1347 (1527)
+++++-=.. -.-+.+..+++|+++... .|+|+-.+ ..+|+|.+.-.+.-+.+.. +... ++.|.+-+
T Consensus 641 ~ii~Fnv~~-~~~~~~~a~~~~v~i~~~--~iIY~l~d~~~~~~~~~l~~~~~e~~~g~a~v~----~vF~~~k~~~iaG 713 (787)
T PRK05306 641 IIIGFNVRP-DAKARKLAEQEGVDIRYY--SIIYDLIDDVKAAMSGMLEPEYEEEIIGQAEVR----EVFKVSKVGTIAG 713 (787)
T ss_pred EEEEEcCCC-CHHHHHHHHHcCCEEEEe--ChHHHHHHHHHHHHhhccCchhheeeeeeEEEE----EEEecCCCCeEEE
Confidence 555443222 222334445678877666 67887542 1356676443332221111 1111 22355555
Q ss_pred eeecCC-----cEEE------EEEEechhhhcChHHHHccccceeEEEEeEecceeecccccccccc
Q psy1758 1348 IEINEK-----ERVR------LEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLG 1403 (1527)
Q Consensus 1348 ~~~~~~-----~~~~------l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~ 1403 (1527)
..-..| ..++ +.|.-....|-.|..+......|+ -+-..|.+|..+. .||+.
T Consensus 714 c~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~-ecgi~~~~~~d~~---~gD~i 776 (787)
T PRK05306 714 CMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGY-ECGIGLENYNDIK---EGDII 776 (787)
T ss_pred EEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCC-EEEEEeeccccCC---CCCEE
Confidence 543211 1111 235556777778888888888888 5666777776666 46665
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=338.74 Aligned_cols=260 Identities=24% Similarity=0.296 Sum_probs=211.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe---------------c--
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY---------------N-- 983 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~---------------~-- 983 (1527)
...||+++||+|||||||+.+|+... .|..+.|++||+|++.....+.+ .
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~-------------~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~ 99 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVK-------------TVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSS 99 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCC-------------cccchhhHHhCCchhccccccccccCcccCCcccccccCCC
Confidence 34689999999999999999998441 26778999999999887775521 1
Q ss_pred ----------------CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC-CChhHHHHHHHHHHcCCcc-EEEEe
Q psy1758 984 ----------------GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTRFVTRKALKLGFKP-IVVVN 1045 (1527)
Q Consensus 984 ----------------~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G-~~~qt~~~~~~~~~~glp~-IvviN 1045 (1527)
.+.++|||||||.+|..++.++++.+|+++|||||.+| +++||++++..+..++++. |+|+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlN 179 (460)
T PTZ00327 100 KPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQN 179 (460)
T ss_pred cccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEe
Confidence 24799999999999999999999999999999999997 8999999999999999975 67899
Q ss_pred ccCCCCC-ChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCcee
Q psy1758 1046 KIDRSNA-RPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQL 1124 (1527)
Q Consensus 1046 KiD~~~a-~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~ 1124 (1527)
|||+.+. ..++..+++++.+.... ...+|++++||++|. |++.|++.|.+.+|.|..+.+.||++
T Consensus 180 KiDlv~~~~~~~~~~ei~~~l~~~~----~~~~~iipVSA~~G~----------nI~~Ll~~L~~~lp~~~r~~~~p~r~ 245 (460)
T PTZ00327 180 KIDLVKEAQAQDQYEEIRNFVKGTI----ADNAPIIPISAQLKY----------NIDVVLEYICTQIPIPKRDLTSPPRM 245 (460)
T ss_pred cccccCHHHHHHHHHHHHHHHHhhc----cCCCeEEEeeCCCCC----------CHHHHHHHHHhhCCCCCCCCCCCcEE
Confidence 9999742 23445556655543321 235799999999998 99999999998999998888899999
Q ss_pred EEEeee--------ccccCceEEEEEeecCccccCCEEEEecCC-----CCCc----CcceeeeEEEeecCceeEeeeee
Q psy1758 1125 QIISLE--------YSSYLGKIGIGRILSGRIKSLQDVVIMNGP-----DDKP----NKAKINQIRVFKGLDRVLVNEAL 1187 (1527)
Q Consensus 1125 ~V~~~~--------~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~-----~g~~----~~~kV~~i~~~~g~~~~~v~~a~ 1187 (1527)
+|..++ ++++.|.++.|+|.+|++++||+|.+.|.+ +|+. ...+|.+|+.+ ..++++|.
T Consensus 246 ~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~----~~~v~~a~ 321 (460)
T PTZ00327 246 IVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAE----NNELQYAV 321 (460)
T ss_pred EEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEEC----CeECCEEc
Confidence 998665 345689999999999999999999999862 1211 23588888764 47899999
Q ss_pred cCCEEEEe-----cc--eecccCCeeeCCCC
Q psy1758 1188 SGDIVLIT-----GI--EEICIGSTICDPSK 1211 (1527)
Q Consensus 1188 AGdIvai~-----gl--~~~~iGdTi~~~~~ 1211 (1527)
|||.|+|. ++ +++..|+.|++++.
T Consensus 322 aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~ 352 (460)
T PTZ00327 322 PGGLIGVGTTIDPTLTRADRLVGQVLGYPGK 352 (460)
T ss_pred CCCEEEEEeccCCCcchhhcccccEEEcCCC
Confidence 99999885 33 25678999998754
|
|
| >KOG2559|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=298.32 Aligned_cols=198 Identities=24% Similarity=0.275 Sum_probs=187.0
Q ss_pred cccceeeEEEEeCCCCCCHHHHHHHHHHHhcc------------------------------------------------
Q psy1758 658 NKNIIHGVLLLDKPYGLSSNNALKKIKYLLNA------------------------------------------------ 689 (1527)
Q Consensus 658 ~~~~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~------------------------------------------------ 689 (1527)
-|+ |+|++|||||+||.|.-+++.|.+.+..
T Consensus 6 i~k-l~Gvl~VYKpsGik~khlr~~i~~~i~k~~~~~~~~s~~q~~~~~~g~~eg~e~~~~~~~~~sV~~~~nhPlv~g~ 84 (318)
T KOG2559|consen 6 IWK-LSGVLCVYKPSGIKSKHLRKLITRKIAKSVSDIESTSRIQLPLISIGVIEGHEKSLVVVGRNSVADYRNHPLVSGR 84 (318)
T ss_pred hhh-hcceeEEecCCCccHHHHHHHHHHHHHhhhcccCCCcccccceEeecccccccceeeeecccchhhhccCCcccCc
Confidence 366 8999999999999999999998776632
Q ss_pred ----ccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCCCcccEEeecCCCCCCHHHHHHHHH
Q psy1758 690 ----KKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILI 765 (1527)
Q Consensus 690 ----~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d~~g~v~~~~~~~~~~~~~~~~~l~ 765 (1527)
.+|+-...||-.|||||++|+|.++++++ ++.+|.+|+.|-++|.+++..+++|+|++.|+++|+
T Consensus 85 s~~~~~V~v~h~l~~~~sgvl~~gVghgc~~i~-----------~~mlg~aT~~~r~Dgri~~~~n~dhVs~~ri~~vla 153 (318)
T KOG2559|consen 85 SIRQEDVQVVHVLPLATSGVLLFGVGHGCESIP-----------ELMLGSATNVYRIDGRIKKSENIDHVSKHRIEKVLA 153 (318)
T ss_pred chhhcceeeEEeecccccceEEEecCcchhhhh-----------hhhhccchhccCccceEeeecccchhhHHHHHHHHH
Confidence 35777778999999999999999999988 677999999999999999999999999999999999
Q ss_pred hccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeEEEEEEecccc--cHHHHHHHHHHHh
Q psy1758 766 NFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGT--YIRVLSEDIGKML 843 (1527)
Q Consensus 766 ~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~~~~v~cs~gt--Yirsl~~dig~~l 843 (1527)
.++|+++...++||+++++.++||||||+|..++..+.+..||+|+|++|..|.|+++++|+..| |+|.|+|+||..|
T Consensus 154 ~lq~shq~a~f~~~nvDl~tqEAyElA~RGl~Rp~~~s~~ivygI~l~~F~~P~F~le~qc~~Etqe~Lr~LVh~igl~L 233 (318)
T KOG2559|consen 154 RLQSSHQSASFRHANVDLETQEAYELARRGLPRPQLPSSQIVYGIDLNWFRSPKFSLETQCSGETQEMLRQLVHHIGLNL 233 (318)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHccCCCcCCCCCceEEEEeeeeecCCccEEEEeeccccHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CChhhhHHHhhcccCccccccccC
Q psy1758 844 GCGAHLKYLRRIGIDKLTLDKCLN 867 (1527)
Q Consensus 844 ~~~a~~~~LrR~~~g~f~~~~a~~ 867 (1527)
++.|+|++|||++.|+|++++|+-
T Consensus 234 ~T~a~c~qlrr~r~g~F~~d~aLL 257 (318)
T KOG2559|consen 234 GTEATCIQLRRQRFGPFGSDNALL 257 (318)
T ss_pred cceeeeeeeeeeccCCCCccHHHH
Confidence 999999999999999999998753
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=304.60 Aligned_cols=305 Identities=27% Similarity=0.323 Sum_probs=234.2
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCccccc------------ccc-----cceecchhhhhcccceeEeeeeEEEEec
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKN------------QNI-----NARIMDSNEIEKERGITIFSKNCSIEYN 983 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~------------~~~-----~~~~~D~~~~E~erGiTi~~~~~~~~~~ 983 (1527)
...++.-+|++|.|||||+++||+.+..+... +.. -+.++|-.+.|||.||||+..+..|...
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 45689999999999999999999986554321 111 1257899999999999999999999999
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEE-EeccCCCCCChhhhHHHHH
Q psy1758 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV-VNKIDRSNARPEWVVDATF 1062 (1527)
Q Consensus 984 ~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~Ivv-iNKiD~~~a~~~~v~~~~~ 1062 (1527)
.+++.|.|||||+.|..+|..+.+.||.+|++|||..|+.+||++|...+..+|++++|+ +||||+.+.+ ++..+++.
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~-e~~F~~I~ 163 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYS-EEVFEAIV 163 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccC-HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998765 9999998875 45666666
Q ss_pred HHHhhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEE
Q psy1758 1063 DLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGI 1140 (1527)
Q Consensus 1063 ~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~ 1140 (1527)
..|..+.....--..-++++||+.|.+.....+ ++..-..||+.+ +.+.........||+++|..+.....--|-..
T Consensus 164 ~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~L-E~v~i~~~~~~~~~RfPVQ~V~Rp~~dfRGya 242 (431)
T COG2895 164 ADYLAFAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEIL-ETVEIADDRSAKAFRFPVQYVNRPNLDFRGYA 242 (431)
T ss_pred HHHHHHHHHcCCCcceEEechhccCCcccccccCCCcccCccHHHHH-hhccccccccccceeeceEEecCCCCcccccc
Confidence 655444332222223589999999974322211 122224566665 56655555667899999998876543345577
Q ss_pred EEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEeccee--cccCCeeeCCCCCCCCCCC
Q psy1758 1141 GRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEE--ICIGSTICDPSKPNGLPML 1218 (1527)
Q Consensus 1141 grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~--~~iGdTi~~~~~~~~l~~~ 1218 (1527)
|+|.+|++++||+|.++|+ | ...+|++|..|.| +.++|.||+-|.+.--++ +..||.|++.+.+.. +.
T Consensus 243 GtiasG~v~~Gd~vvvlPs--G--~~s~V~~Ivt~dg----~~~~A~aG~aVtl~L~deidisRGd~i~~~~~~~~-~~- 312 (431)
T COG2895 243 GTIASGSVKVGDEVVVLPS--G--KTSRVKRIVTFDG----ELAQASAGEAVTLVLADEIDISRGDLIVAADAPPA-VA- 312 (431)
T ss_pred eeeeccceecCCeEEEccC--C--CeeeEEEEeccCC----chhhccCCceEEEEEcceeecccCcEEEccCCCcc-hh-
Confidence 9999999999999999988 4 4678999999987 688999999998876665 455999999877643 22
Q ss_pred ccCCCceeEEEEecCCCCCCC
Q psy1758 1219 NIDEPTLTINFMVNNSPLAGR 1239 (1527)
Q Consensus 1219 ~~~~P~l~~~~~~~~~p~~g~ 1239 (1527)
......++|.......+|+
T Consensus 313 --~~f~A~vvWm~~~pl~pGr 331 (431)
T COG2895 313 --DAFDADVVWMDEEPLLPGR 331 (431)
T ss_pred --hhcceeEEEecCCCCCCCc
Confidence 2233556666555444554
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-31 Score=329.43 Aligned_cols=425 Identities=22% Similarity=0.244 Sum_probs=297.1
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCe-EEEEEeCCCCCCch
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT-RINIIDTPGHADFG 999 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~-~iniiDTPGh~df~ 999 (1527)
+.++|+|+||+|||||||+++|.... +. ....+|+|.+.....+.|++. .++|||||||.+|.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~--v~--------------~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~ 149 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTK--VA--------------QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT 149 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCC--cc--------------cccCCceeecceEEEEEECCCcEEEEEECCCCcchh
Confidence 44689999999999999999996431 11 112368998888888888655 99999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
..+.++++.+|+++||||+.+|+++||.+++..+...++|+++++||+|+++++++++.+++.+. . +....+..+.|+
T Consensus 150 ~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~-g-~~~~~~~~~~~~ 227 (587)
T TIGR00487 150 SMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEY-G-LVPEDWGGDTIF 227 (587)
T ss_pred hHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHh-h-hhHHhcCCCceE
Confidence 99999999999999999999999999999999999999999999999999887776666555431 0 111111224689
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhh--cCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEe
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKY--VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 1157 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~--lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~ 1157 (1527)
+++||++|. |+++|++++... ++.+..+++.|+++.|+++.++++.|.+++++|++|+|++||.|.+.
T Consensus 228 v~iSAktGe----------GI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~ 297 (587)
T TIGR00487 228 VPVSALTGD----------GIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVG 297 (587)
T ss_pred EEEECCCCC----------ChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEEC
Confidence 999999998 999999998643 44455567799999999999999999999999999999999999886
Q ss_pred cCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceec-ccCCeeeCCCCC------------------------
Q psy1758 1158 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEI-CIGSTICDPSKP------------------------ 1212 (1527)
Q Consensus 1158 ~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~-~iGdTi~~~~~~------------------------ 1212 (1527)
+. ..||..|+...| ..+++|.||++|.+.|++++ ..||+++-.++.
T Consensus 298 ~~------~~kVr~l~~~~g---~~v~~a~~g~~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~ 368 (587)
T TIGR00487 298 AA------YGRVRAMIDENG---KSVKEAGPSKPVEILGLSDVPAAGDEFIVFKDEKDARLVAEKRAGKLRQKALSRSVK 368 (587)
T ss_pred CC------ccEEEEEECCCC---CCCCEECCCCEEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 54 357887776554 47899999999999999987 789999732111
Q ss_pred CCCCCCc-----cCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCC-------------CCCe
Q psy1758 1213 NGLPMLN-----IDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKH-------------DDSI 1274 (1527)
Q Consensus 1213 ~~l~~~~-----~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~-------------~~~g 1274 (1527)
..+..+. -..|.+.+.+.+.+. | +.+.|.+.|.++..+++++++-...- .+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~viikad~~------G---s~eal~~~l~~~~~~~~~~~v~~~~vG~i~~~Dv~~a~~~~a- 438 (587)
T TIGR00487 369 VTLDNLFEQIKEGELKELNIILKADVQ------G---SLEAIKNSLEKLNNEEVKVKVIHSGVGGITETDISLASASNA- 438 (587)
T ss_pred cchhHhhhhhhccCCceEEEEEEeCCc------c---hHHHHHHHHHhhcccCCeEEEEEeecCCCchhhHHHHHhcCC-
Confidence 1111111 123777888876442 3 45789999999999999998876411 123
Q ss_pred EEEEecchhHHHHHHHHHHhcCcEEEEecCeeeEEEec------ceEeeeeEEEEEEecCcchHHHHHHHh-ccCCeEee
Q psy1758 1275 YEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLN------GELYEPYENLFVDIEEINQGIIMQKLN-YRGGDLKN 1347 (1527)
Q Consensus 1275 ~~v~g~GelhL~vl~e~lrreg~ev~vs~P~V~yre~~------g~llEP~~~~~i~vp~e~~G~v~~~l~-~rrG~~~~ 1347 (1527)
+++++-=... .-..+..+++|+++... .|+|+-.+ ..+|+|...-.+.-+.+.. .-.. ++.|.+.+
T Consensus 439 ~i~~Fnv~~~-~~~~~~a~~~~v~i~~~--~iIY~l~d~~~~~~~~~~~~~~~~~~~g~a~v~----~vf~~~~~~~iaG 511 (587)
T TIGR00487 439 IIIGFNVRPD-ATAKNVAEAENVDIRYY--SVIYKLIDEIRAAMKGMLDPEYEEEIIGQAEVR----QVFNVPKIGNIAG 511 (587)
T ss_pred EEEEEecCCC-HHHHHHHHHcCCeEEEe--ChHHHHHHHHHHHHHhccCcceeeEeeeeEEEE----EEEecCCCCEEEE
Confidence 4444322222 22233345668877666 77886432 1356665443332222211 0111 23355555
Q ss_pred eeecCC-----cEEE------EEEEechhhhcChHHHHccccceeEEEEeEecceeecccccccccc
Q psy1758 1348 IEINEK-----ERVR------LEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLG 1403 (1527)
Q Consensus 1348 ~~~~~~-----~~~~------l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~ 1403 (1527)
..-..| ..++ +.|......|-.+..+.....+|+ -+-..+.+|..++ .||+.
T Consensus 512 ~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~-ecgi~~~~~~~~~---~gD~i 574 (587)
T TIGR00487 512 CYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGY-ECGIGIKNYNDIK---EGDII 574 (587)
T ss_pred EEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCC-EEEEEEeccccCC---CCCEE
Confidence 543211 1121 225556666667777777777777 4555566665555 35554
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=339.66 Aligned_cols=279 Identities=24% Similarity=0.275 Sum_probs=217.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCccccc------------ccc-----cceecchhhhhcccceeEeeeeEEEEec
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKN------------QNI-----NARIMDSNEIEKERGITIFSKNCSIEYN 983 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~------------~~~-----~~~~~D~~~~E~erGiTi~~~~~~~~~~ 983 (1527)
...||+|+||+|||||||+++|++.+|.+... +.+ ..+++|..+.|++||+|++.....+.++
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 34579999999999999999999998877621 221 1378999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCc-cEEEEeccCCCCCCh---hhhHH
Q psy1758 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNARP---EWVVD 1059 (1527)
Q Consensus 984 ~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~~---~~v~~ 1059 (1527)
+.+++|||||||.+|...+..++..+|+++|||||.+|+++||++++..+..+++| .|+|+||+|+.+.+. +++.+
T Consensus 103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~ 182 (632)
T PRK05506 103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVA 182 (632)
T ss_pred CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999975 567899999975332 23333
Q ss_pred HHHHHHhhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCce
Q psy1758 1060 ATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGK 1137 (1527)
Q Consensus 1060 ~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~ 1137 (1527)
++.+.+..++. -+.|++++||++|.+..+... .+.....|++.| +.++.|....+.||+++|..++...+.++
T Consensus 183 ~i~~~~~~~~~----~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l-~~~~~~~~~~~~p~r~~i~~v~~~~~~~~ 257 (632)
T PRK05506 183 DYRAFAAKLGL----HDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHL-ETVEIASDRNLKDFRFPVQYVNRPNLDFR 257 (632)
T ss_pred HHHHHHHHcCC----CCccEEEEecccCCCccccccCCCcccHhHHHHHH-hcCCCCCCcCCCCceeeEEEEEecCCCce
Confidence 44333333322 235799999999984332211 111123566665 55676666678999999998765433333
Q ss_pred EEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecc--eecccCCeeeCCCCC
Q psy1758 1138 IGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGI--EEICIGSTICDPSKP 1212 (1527)
Q Consensus 1138 v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl--~~~~iGdTi~~~~~~ 1212 (1527)
...|+|.+|+|++||+|.++|. + ...+|.+|+.+. .++++|.|||.|++..- .++..|++||+++++
T Consensus 258 g~~G~v~~G~l~~gd~v~i~P~--~--~~~~VksI~~~~----~~~~~a~aG~~v~i~l~~~~~i~rG~vL~~~~~~ 326 (632)
T PRK05506 258 GFAGTVASGVVRPGDEVVVLPS--G--KTSRVKRIVTPD----GDLDEAFAGQAVTLTLADEIDISRGDMLARADNR 326 (632)
T ss_pred EEEEEEecceeecCCEEEEcCC--C--ceEEEEEEEECC----ceeCEEcCCCeEEEEecCccccCCccEEecCCCC
Confidence 3679999999999999999976 3 457899998664 46899999999987643 467889999998653
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-31 Score=332.78 Aligned_cols=251 Identities=24% Similarity=0.278 Sum_probs=210.7
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe-cCeEEEEEeCCCCCCchHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~iniiDTPGh~df~~ev 1002 (1527)
.|+++||+|||||||+++|+.. .+|..+.|++||+|++.....+.. ++..++|||||||.+|..++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~-------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m 68 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV-------------NADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNM 68 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-------------CCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHH
Confidence 4899999999999999999643 147778899999999998877766 46789999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCCCC-ChhhhHHHHHHHHhhhcccccccCCcEE
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNA-RPEWVVDATFDLFDKLCATEEQLDFPVI 1080 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~~a-~~~~v~~~~~~~~~~l~~~~~~~~~pvi 1080 (1527)
.+++..+|+++||||+.+|+++||++++..+...++|. |||+||+|+.+. ..+.+.+++.+.+...+.. ..|++
T Consensus 69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~----~~~ii 144 (614)
T PRK10512 69 LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFA----EAKLF 144 (614)
T ss_pred HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCC----CCcEE
Confidence 99999999999999999999999999999999999996 689999999653 2344555665554333211 35899
Q ss_pred EeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCC
Q psy1758 1081 YTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGP 1160 (1527)
Q Consensus 1081 ~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~ 1160 (1527)
++||++|+ |++.|++.|.+. +.|..+.++||+++|..++..++.|.++.|+|.+|+|++||+|.+.+.
T Consensus 145 ~VSA~tG~----------gI~~L~~~L~~~-~~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~- 212 (614)
T PRK10512 145 VTAATEGR----------GIDALREHLLQL-PEREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGV- 212 (614)
T ss_pred EEeCCCCC----------CCHHHHHHHHHh-hccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCC-
Confidence 99999998 999999999765 555555789999999999999999999999999999999999999876
Q ss_pred CCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ec-ce--ecccCCeeeCCC
Q psy1758 1161 DDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TG-IE--EICIGSTICDPS 1210 (1527)
Q Consensus 1161 ~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~g-l~--~~~iGdTi~~~~ 1210 (1527)
+ ...+|.+|+.+ ..++++|.|||.|++ .| ++ ++..||++|++.
T Consensus 213 -~--~~~~VrsIq~~----~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~ 260 (614)
T PRK10512 213 -N--KPMRVRGLHAQ----NQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA 260 (614)
T ss_pred -C--CcEEEEEEecC----CcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC
Confidence 2 35688888765 368999999999977 44 43 688999999863
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=317.48 Aligned_cols=262 Identities=26% Similarity=0.316 Sum_probs=209.9
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec----------------
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---------------- 983 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---------------- 983 (1527)
....||+++||+|||||||+++|.. ..+|..+.|++||+|+......+.|.
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~-------------~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTG-------------VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPK 73 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhC-------------eecccCHhHHhcCcEEEecccccccccccccCcccccccccc
Confidence 3457999999999999999999942 13688999999999999876554442
Q ss_pred ----------CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHHcCCc-cEEEEeccCCCC
Q psy1758 984 ----------GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKLGFK-PIVVVNKIDRSN 1051 (1527)
Q Consensus 984 ----------~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~~glp-~IvviNKiD~~~ 1051 (1527)
.++++|||||||.+|..++.+++..+|++++|||+++|. .+||..++..+...+++ .++|+||+|+.+
T Consensus 74 ~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 74 CPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVS 153 (411)
T ss_pred ccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecccc
Confidence 268999999999999999999999999999999999997 89999999998888875 688899999975
Q ss_pred CCh-hhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeee
Q psy1758 1052 ARP-EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLE 1130 (1527)
Q Consensus 1052 a~~-~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~ 1130 (1527)
.+. ....+++...+... ....+|++++||++|. |++.|++.|.+.+|.|..+.+.||+++|.+++
T Consensus 154 ~~~~~~~~~~i~~~l~~~----~~~~~~ii~vSA~~g~----------gI~~L~~~L~~~l~~~~~~~~~~~r~~I~~~f 219 (411)
T PRK04000 154 KERALENYEQIKEFVKGT----VAENAPIIPVSALHKV----------NIDALIEAIEEEIPTPERDLDKPPRMYVARSF 219 (411)
T ss_pred chhHHHHHHHHHHHhccc----cCCCCeEEEEECCCCc----------CHHHHHHHHHHhCCCCCCCCCCCceEEEEeee
Confidence 321 12233444332211 1124689999999998 99999999999999888778899999999877
Q ss_pred --------ccccCceEEEEEeecCccccCCEEEEecCCC----CC----cCcceeeeEEEeecCceeEeeeeecCCEEEE
Q psy1758 1131 --------YSSYLGKIGIGRILSGRIKSLQDVVIMNGPD----DK----PNKAKINQIRVFKGLDRVLVNEALSGDIVLI 1194 (1527)
Q Consensus 1131 --------~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~----g~----~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai 1194 (1527)
++++.|.++.|||.+|+|++||.|.++|.+. |. ....+|.+|..+ ..++++|.|||.|++
T Consensus 220 ~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~----~~~~~~a~~G~~v~i 295 (411)
T PRK04000 220 DVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAG----GEKVEEARPGGLVGV 295 (411)
T ss_pred eecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEEC----CEECCEEcCCCEEEE
Confidence 3456788999999999999999999997621 10 123578888765 378999999999987
Q ss_pred e-----cc--eecccCCeeeCCCCC
Q psy1758 1195 T-----GI--EEICIGSTICDPSKP 1212 (1527)
Q Consensus 1195 ~-----gl--~~~~iGdTi~~~~~~ 1212 (1527)
+ ++ .++..||.||+++.+
T Consensus 296 ~l~~~~~i~~~~i~~G~vl~~~~~~ 320 (411)
T PRK04000 296 GTKLDPSLTKADALAGSVAGKPGTL 320 (411)
T ss_pred EeccCCCCCHHHccCccEEEcCCCC
Confidence 5 33 357789999998654
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=316.17 Aligned_cols=259 Identities=27% Similarity=0.347 Sum_probs=208.2
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe-------------------
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY------------------- 982 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~------------------- 982 (1527)
..||+++||+|||||||+++|... .+|..+.|++||+|+......+.+
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~-------------~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCP 70 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCe-------------ecccCHhHHHcCceeEecccccccccccccCcccccccccccc
Confidence 468999999999999999999532 358889999999999987655432
Q ss_pred -------cCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHHcCCc-cEEEEeccCCCCCC
Q psy1758 983 -------NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR 1053 (1527)
Q Consensus 983 -------~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~ 1053 (1527)
.++.++|||||||.+|..++.++++.+|+++|||||++|. ++||++++..+..++++ .++|+||+|+.+.+
T Consensus 71 ~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~ 150 (406)
T TIGR03680 71 NCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKE 150 (406)
T ss_pred ccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHH
Confidence 1468999999999999999999999999999999999998 89999999999888876 67889999997542
Q ss_pred h-hhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeec-
Q psy1758 1054 P-EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEY- 1131 (1527)
Q Consensus 1054 ~-~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~- 1131 (1527)
. .+..+++.+.+... ....+|++++||++|. |++.|+++|...+|.|..+.+.||+++|+.+++
T Consensus 151 ~~~~~~~~i~~~l~~~----~~~~~~ii~vSA~~g~----------gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v 216 (406)
T TIGR03680 151 KALENYEEIKEFVKGT----VAENAPIIPVSALHNA----------NIDALLEAIEKFIPTPERDLDKPPLMYVARSFDV 216 (406)
T ss_pred HHHHHHHHHHhhhhhc----ccCCCeEEEEECCCCC----------ChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEee
Confidence 1 22234444333211 1225789999999998 999999999998998887888999999998773
Q ss_pred -------cccCceEEEEEeecCccccCCEEEEecCC----CCC----cCcceeeeEEEeecCceeEeeeeecCCEEEEe-
Q psy1758 1132 -------SSYLGKIGIGRILSGRIKSLQDVVIMNGP----DDK----PNKAKINQIRVFKGLDRVLVNEALSGDIVLIT- 1195 (1527)
Q Consensus 1132 -------d~~~G~v~~grV~sG~lk~Gd~v~~~~~~----~g~----~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~- 1195 (1527)
++++|.++.|+|.+|+|++||.|.++|.+ +|. ....+|.+|..+ ..++++|.|||.|++.
T Consensus 217 ~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~----~~~~~~a~~G~~v~i~l 292 (406)
T TIGR03680 217 NKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAG----GYKVEEARPGGLVGVGT 292 (406)
T ss_pred cCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEEC----CEECCEEcCCCEEEEee
Confidence 45578899999999999999999999762 110 123578888765 3789999999999874
Q ss_pred ----cc--eecccCCeeeCCCC
Q psy1758 1196 ----GI--EEICIGSTICDPSK 1211 (1527)
Q Consensus 1196 ----gl--~~~~iGdTi~~~~~ 1211 (1527)
++ .++..||.+|+++.
T Consensus 293 ~~~~~i~~~dv~~G~vl~~~~~ 314 (406)
T TIGR03680 293 KLDPALTKADALAGQVVGKPGT 314 (406)
T ss_pred ccCCCCCHHHcccccEEEcCCC
Confidence 33 35677999999764
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >KOG0458|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=303.08 Aligned_cols=279 Identities=26% Similarity=0.281 Sum_probs=227.4
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccc---------------cccccceecchhhhhcccceeEeeeeEEEEec
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRK---------------NQNINARIMDSNEIEKERGITIFSKNCSIEYN 983 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~---------------~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~ 983 (1527)
+....+.+++||+|+|||||.++||+.-|.+.. ..+..+|+||....||+||+|++.+...|+.+
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 446789999999999999999999998777652 22445699999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCC-------hhHHHHHHHHHHcCCccE-EEEeccCCCCCC--
Q psy1758 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPM-------PQTRFVTRKALKLGFKPI-VVVNKIDRSNAR-- 1053 (1527)
Q Consensus 984 ~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~-------~qt~~~~~~~~~~glp~I-vviNKiD~~~a~-- 1053 (1527)
.+.+.|+|+|||.||..+|..+...||.++|||||+.|.+ .||++|...+..+|+..+ |++||||..+++
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~ 333 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQD 333 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHH
Confidence 9999999999999999999999999999999999997654 499999999999998875 559999999885
Q ss_pred -hhhhHHHHHHHHhh-hcccccccCCcEEEeccccCCcCCC-----cccccCCChhHHHHHHhhcCCCCCCCCCCceeEE
Q psy1758 1054 -PEWVVDATFDLFDK-LCATEEQLDFPVIYTSALHGYANEN-----SKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQI 1126 (1527)
Q Consensus 1054 -~~~v~~~~~~~~~~-l~~~~~~~~~pvi~~SA~~g~~~~~-----~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V 1126 (1527)
++++...+...+.+ .+..+ -++.++++|+++|.+-.. ....+..-..||+.|-. +..|....+.||++.|
T Consensus 334 RF~eIk~~l~~fL~~~~gf~e--s~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~~~~kPl~ltI 410 (603)
T KOG0458|consen 334 RFEEIKNKLSSFLKESCGFKE--SSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPERPIDKPLRLTI 410 (603)
T ss_pred HHHHHHHHHHHHHHHhcCccc--CCcceEecccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCCCcccCCeEEEh
Confidence 55555555555522 22222 245689999999974211 11123444578998866 7777777888999999
Q ss_pred EeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecce--eccc
Q psy1758 1127 ISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGIE--EICI 1202 (1527)
Q Consensus 1127 ~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~i 1202 (1527)
.++...+..|..++|||.+|.|++||.|+++++ .....|..|..- ..+...|.|||-|.+ .|+. .+.+
T Consensus 411 sdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s----~e~~~vk~l~~~----~~~~~~a~AGD~Vsl~L~~i~~n~v~~ 482 (603)
T KOG0458|consen 411 SDIYPLPSSGVSISGKIESGYIQPGQKLYIMTS----REDATVKGLTSN----DEPKTWAVAGDNVSLKLPGILPNLVQV 482 (603)
T ss_pred hheeecCCCeeEEEEEEeccccccCCEEEEecC----cceEEEEeeecC----CCcceeEeeCCEEEEecCccChhhccc
Confidence 999999999999999999999999999999977 245678877544 357889999999976 4543 5788
Q ss_pred CCeeeC
Q psy1758 1203 GSTICD 1208 (1527)
Q Consensus 1203 GdTi~~ 1208 (1527)
||++|.
T Consensus 483 g~i~~~ 488 (603)
T KOG0458|consen 483 GDIADS 488 (603)
T ss_pred ceeeec
Confidence 999994
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-29 Score=291.63 Aligned_cols=150 Identities=25% Similarity=0.410 Sum_probs=125.1
Q ss_pred CEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChh-----hHH----HHHHhhccc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE-----AFT----AMRARGAKV 139 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e-----~f~----~~~~~~~~~ 139 (1527)
|.|+|+|.||||||||+|+|++... .++..||+|+|..+....|.+.++.++||+|-+ .+. .....++..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999885 889999999999999999999999999999943 233 333456789
Q ss_pred cCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 140 TDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 140 aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
||++|||+|+..|+.+++.+....++..+.|+|+|+||+|-... +....+... -+.-..+++||.+|.|+
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~--e~~~~efys--------lG~g~~~~ISA~Hg~Gi 153 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA--EELAYEFYS--------LGFGEPVPISAEHGRGI 153 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh--hhhHHHHHh--------cCCCCceEeehhhccCH
Confidence 99999999999999999999999999888999999999997531 111111111 12347899999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
.+|++.+...
T Consensus 154 ~dLld~v~~~ 163 (444)
T COG1160 154 GDLLDAVLEL 163 (444)
T ss_pred HHHHHHHHhh
Confidence 9999999744
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=324.98 Aligned_cols=426 Identities=20% Similarity=0.205 Sum_probs=281.5
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec----CeEEEEEeCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN----GTRINIIDTPGH 995 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~----~~~iniiDTPGh 995 (1527)
.+.++|+|+||+|||||||+++|+...... +..+|+|.......+.|. ++.++|||||||
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~----------------~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh 305 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ----------------KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH 305 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc----------------ccCCccccccceEEEEEEecCCceEEEEEECCcH
Confidence 466899999999999999999997653221 223688877666666653 589999999999
Q ss_pred CCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 996 ADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 996 ~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.+|...+.++++.+|++||||||.+|+++||.++|..+...++|+|+|+||+|+++++.+.+.+++... .+.......
T Consensus 306 e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~--~ll~e~~g~ 383 (742)
T CHL00189 306 EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKY--NLIPEKWGG 383 (742)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHh--ccchHhhCC
Confidence 999999999999999999999999999999999999999999999999999999887766555554331 000111112
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC--CCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCE
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP--VHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQD 1153 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp--~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~ 1153 (1527)
.+|++++||++|. |+++|++++..... .+..+++.|+.+.|+++..|++.|.+++++|++|+|++||.
T Consensus 384 ~vpvv~VSAktG~----------GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~ 453 (742)
T CHL00189 384 DTPMIPISASQGT----------NIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGDI 453 (742)
T ss_pred CceEEEEECCCCC----------CHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEecCCE
Confidence 4789999999998 99999999977542 34456678999999999999999999999999999999999
Q ss_pred EEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecc-eecccCCeeeCCCCCC---------------CC-C
Q psy1758 1154 VVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGI-EEICIGSTICDPSKPN---------------GL-P 1216 (1527)
Q Consensus 1154 v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl-~~~~iGdTi~~~~~~~---------------~l-~ 1216 (1527)
|.+.+. .++|+.+.+....++++|.|||+|+|.|+ +...+||++.-.++.. .. .
T Consensus 454 vv~g~~---------~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~~~~Gd~l~v~~~e~~a~~~~~~~~~~~~~~~~~ 524 (742)
T CHL00189 454 IVIGTS---------YAKIRGMINSLGNKINLATPSSVVEIWGLSSVPATGEHFQVFNSEKEAKLKIIKNKENNKKDTTK 524 (742)
T ss_pred EEECCc---------ceEEEEEEcCCCcCccEEcCCCceEecCcccCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhhhc
Confidence 987543 23444555566678999999999999999 4567899996432210 00 0
Q ss_pred CCc----------cCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCC-------------CCC
Q psy1758 1217 MLN----------IDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKH-------------DDS 1273 (1527)
Q Consensus 1217 ~~~----------~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~-------------~~~ 1273 (1527)
.+. -..+.+.+.+.... .| +.+.|.+.|.++....+.++|-...- ++.
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~iiKad~------~G---s~EAi~~~l~~~~~~~v~i~i~~~~vG~it~~Dv~lA~~~~a 595 (742)
T CHL00189 525 RITLSTTKTINKKDNKKQINLIIKTDT------QG---SIEAIINSISQIPQKKVQLNILYASLGEVTETDVEFASTTNA 595 (742)
T ss_pred ccchHHHHHHhhhcCCceeeEEEEeCC------cc---hHHHHHHHHHhcCCCcEEEEEEEeecCCCCHHHHHHHHhcCC
Confidence 000 01245555665432 23 45677788877754445555544311 122
Q ss_pred eEEEEecchhHHHHHHHHHHhcCcEEEEecCeeeEEEec------ceEeeeeEEEEEEecCcchHHHHHHHhccCCeEee
Q psy1758 1274 IYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLN------GELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKN 1347 (1527)
Q Consensus 1274 g~~v~g~GelhL~vl~e~lrreg~ev~vs~P~V~yre~~------g~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~ 1347 (1527)
+++++ +---..-..+..+++|+++... .|+|+-.+ ..+|+|.+.-.+.-..+ |.......+|.+.+
T Consensus 596 -~ii~F-nv~~~~~~~~~a~~~~v~i~~~--~iIY~lid~~~~~~~~~l~~~~~~~~~g~a~----v~~vF~~~k~~iaG 667 (742)
T CHL00189 596 -EILAF-NTNLAPGAKKAARKLNIIIKEY--QVIYDLLEYIEALMEDLLDPEYKKVPIGEAE----VKTVFPLAKRFVAG 667 (742)
T ss_pred -EEEEe-eCCCCHHHHHHHHHcCCEEEEe--ChHHHHHHHHHHHHhhccCceeeeeeceeEE----eeEEEecCCCEEEE
Confidence 33332 2211122223334567766555 67776432 13556654322110000 11111112355665
Q ss_pred eeecC-----CcEEE------EEEEechhhhcChHHHHccccceeEEEEeEecceeecccccccccc
Q psy1758 1348 IEINE-----KERVR------LEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLG 1403 (1527)
Q Consensus 1348 ~~~~~-----~~~~~------l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~ 1403 (1527)
..-.. +..++ +.|......|-.|..+.....+|+= +-..+.+|..+. .||+.
T Consensus 668 c~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~e-cgi~i~~~~d~~---~gD~i 730 (742)
T CHL00189 668 CRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNE-CGIFIEEFQLWQ---SGDKI 730 (742)
T ss_pred EEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCE-EEEEeeCCCCCC---cCCEE
Confidence 54321 11222 2355566677778888888877752 333445555554 36654
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=319.22 Aligned_cols=252 Identities=26% Similarity=0.283 Sum_probs=208.4
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++||+|||||||+++|+... +|..+.|+++|+|++.....+.++++.++|||||||.+|...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~-------------~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~ 68 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIA-------------ADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAI 68 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc-------------CcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHH
Confidence 79999999999999999997431 36677899999999999999999999999999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCc-cEEEEeccCCCCCC-hhhhHHHHHHHHhhhcccccccCCcEEE
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR-PEWVVDATFDLFDKLCATEEQLDFPVIY 1081 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~-~~~v~~~~~~~~~~l~~~~~~~~~pvi~ 1081 (1527)
.++..+|++++|||+++|+++||.+++..+...++| .|+|+||+|+.+.+ .+.+.+++.+.+...+.. ..+|+++
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~---~~~~ii~ 145 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFL---KNAKIFK 145 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCC---CCCcEEE
Confidence 999999999999999999999999999999999999 89999999997533 223344555444332211 1468999
Q ss_pred eccccCCcCCCcccccCCChhHHHHHHhhcCCCC-CCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCC
Q psy1758 1082 TSALHGYANENSKARQGNMIPLFEAILKYVPVHK-DNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGP 1160 (1527)
Q Consensus 1082 ~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~-~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~ 1160 (1527)
+||++|. |++++++.+.+.++... ...++||+++|..++..++.|.++.|+|.+|++++||+|.++|.
T Consensus 146 vSA~tG~----------GI~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~- 214 (581)
T TIGR00475 146 TSAKTGQ----------GIGELKKELKNLLESLDIKRIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPI- 214 (581)
T ss_pred EeCCCCC----------CchhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCC-
Confidence 9999998 88888888766554321 12578999999999999999999999999999999999999987
Q ss_pred CCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecce--ecccCCeeeCC
Q psy1758 1161 DDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGIE--EICIGSTICDP 1209 (1527)
Q Consensus 1161 ~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~iGdTi~~~ 1209 (1527)
+ ...+|.+|+.+ ..++++|.|||.|++ .|++ ++..|..++++
T Consensus 215 -~--~~~~Vr~iq~~----~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~ 260 (581)
T TIGR00475 215 -N--HEVRVKAIQAQ----NQDVEIAYAGQRIALNLMDVEPESLKRGLLILTP 260 (581)
T ss_pred -C--ceEEEeEEEEC----CccCCEEECCCEEEEEeCCCCHHHcCCceEEcCC
Confidence 2 45789999765 367999999999976 4553 57789666543
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=282.69 Aligned_cols=190 Identities=42% Similarity=0.605 Sum_probs=160.3
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec----------CeEEEEEeC
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN----------GTRINIIDT 992 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~----------~~~iniiDT 992 (1527)
|||||+||+|||||||+++|++.+|.+.+......++||+.+.|++||+|+.++..++.|. ++.++||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 7999999999999999999999999877665555689999999999999999998888886 789999999
Q ss_pred CCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCC----CCChhhhHHHHHHHHhhh
Q psy1758 993 PGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS----NARPEWVVDATFDLFDKL 1068 (1527)
Q Consensus 993 PGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~----~a~~~~v~~~~~~~~~~l 1068 (1527)
|||.+|..++.++++.+|++++|||+.+|+..||+.+++.+...++|+++|+||+|+. ..++++....+.+++.++
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~~ 160 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLARIIEQV 160 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 234555555555544433
Q ss_pred cc-------------cccccCC-c----EEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1069 CA-------------TEEQLDF-P----VIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1069 ~~-------------~~~~~~~-p----vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.. .+++..+ | |+++||+.||+. +.. .-..+.++|+.|++++|+|
T Consensus 161 n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f-~~~-~f~~~~~~~~~~~~~~~~p 222 (222)
T cd01885 161 NAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGF-TII-KFARIYAVLEMVVKHLPSP 222 (222)
T ss_pred hHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEe-ccc-cccchHHHHHHHHhhCCCC
Confidence 22 1123345 7 999999999975 332 2346789999999999987
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-27 Score=290.42 Aligned_cols=149 Identities=24% Similarity=0.360 Sum_probs=120.3
Q ss_pred CEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhh--------HHHHHHhhcccc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA--------FTAMRARGAKVT 140 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~--------f~~~~~~~~~~a 140 (1527)
++|+++|++|||||||+++|.+... .....+++|++.....+.+++..+.+|||||++. +......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 6899999999999999999998775 4677889999999988999999999999999887 333445677899
Q ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 141 D~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|++++|+|+.++......+....++..+.|+++|+||+|+.+.. ....+.. .+ +...++++||++|.|++
T Consensus 82 d~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~--~~~~~~~-------~l-g~~~~~~iSa~~g~gv~ 151 (435)
T PRK00093 82 DVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE--ADAYEFY-------SL-GLGEPYPISAEHGRGIG 151 (435)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch--hhHHHHH-------hc-CCCCCEEEEeeCCCCHH
Confidence 99999999999888877777788888899999999999975411 1111111 11 12247899999999999
Q ss_pred HHHHHHHH
Q psy1758 221 KLLENISL 228 (1527)
Q Consensus 221 eL~~~l~~ 228 (1527)
++++.+..
T Consensus 152 ~l~~~I~~ 159 (435)
T PRK00093 152 DLLDAILE 159 (435)
T ss_pred HHHHHHHh
Confidence 99998863
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=283.91 Aligned_cols=250 Identities=28% Similarity=0.345 Sum_probs=215.4
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
.|+..||+|||||||+.++.+. ..|..+.|++||+|++....++...++.+.|||+|||+||...+.
T Consensus 2 ii~t~GhidHgkT~L~~altg~-------------~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~mi 68 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGG-------------VTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLL 68 (447)
T ss_pred eEEEeeeeeccchhhhhhhccc-------------ccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHH
Confidence 5889999999999999999643 238889999999999999999999999999999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEEEe
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYT 1082 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~ 1082 (1527)
.++...|.++||||+.+|+++||.+++..+..+|++. ++|+||+|+.+. +++.+.+.+.+..+. -.+.|++.+
T Consensus 69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~--~r~e~~i~~Il~~l~----l~~~~i~~~ 142 (447)
T COG3276 69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE--ARIEQKIKQILADLS----LANAKIFKT 142 (447)
T ss_pred hhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH--HHHHHHHHHHHhhcc----ccccccccc
Confidence 9999999999999999999999999999999999999 889999999652 223333333333322 224578999
Q ss_pred ccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCC
Q psy1758 1083 SALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD 1162 (1527)
Q Consensus 1083 SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g 1162 (1527)
|+.+|. |+++|-+.|.+....+..+.+.||+++|...+...+.|.|+.|.++||++++||++++.|.
T Consensus 143 s~~~g~----------GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~--- 209 (447)
T COG3276 143 SAKTGR----------GIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPI--- 209 (447)
T ss_pred ccccCC----------CHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecC---
Confidence 999998 9999999998776556778899999999999999999999999999999999999999987
Q ss_pred CcCcceeeeEEEeecCceeEeeeeecCCEEEEe--cc--eecccCCeeeCCC
Q psy1758 1163 KPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GI--EEICIGSTICDPS 1210 (1527)
Q Consensus 1163 ~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~--gl--~~~~iGdTi~~~~ 1210 (1527)
.+..+|.+|+.++ +++++|.||+.|+++ |. +++..||.|.+++
T Consensus 210 -~k~v~VRsIq~~d----~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~ 256 (447)
T COG3276 210 -NKEVRVRSIQAHD----VDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPE 256 (447)
T ss_pred -CCeEEEEeeeecC----cchhhccccceeeeecCCCCHHHhhcccEeccCC
Confidence 3568899998765 689999999999764 54 3677899998765
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=275.31 Aligned_cols=182 Identities=36% Similarity=0.466 Sum_probs=158.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCccccccccc--ceecchhhhhcccceeEeeeeEEEE--ecCeEEEEEeCCCCC
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIE--YNGTRINIIDTPGHA 996 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~--~~~~~iniiDTPGh~ 996 (1527)
++|||+++||+|||||||+++|++..+.+.+.+... .+.+|..+.|+++|+|+......+. ++++.++|+|||||.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 579999999999999999999999988776654332 3578999999999999999999999 999999999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHH-hhhccccccc
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLF-DKLCATEEQL 1075 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~-~~l~~~~~~~ 1075 (1527)
+|..++.++++.+|++|+||||.+|+.+||++++..+..+++|+|+|+||||+...++++..+++...| ....... ..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~-~~ 160 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG-EE 160 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT-TS
T ss_pred ceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc-cc
Confidence 999999999999999999999999999999999999999999999999999999777777888887554 2222211 13
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
.+|++++||++|+ |++.|++++.+++|+
T Consensus 161 ~~~vi~~Sa~~g~----------gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 161 IVPVIPISALTGD----------GIDELLEALVELLPS 188 (188)
T ss_dssp TEEEEEEBTTTTB----------THHHHHHHHHHHS--
T ss_pred cceEEEEecCCCC----------CHHHHHHHHHHhCcC
Confidence 5799999999999 999999999999985
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-27 Score=295.78 Aligned_cols=250 Identities=28% Similarity=0.373 Sum_probs=204.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccc--cc--------------cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHH
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTN--VV--------------FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMR 133 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~--~~--------------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~ 133 (1527)
.+|+|+||+|||||||+++|.... +. .....|+|+......+.|++.+++|||||||++|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 369999999999999999997632 11 12345899999999999999999999999999999999
Q ss_pred HhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc--ccccCCCCcEEEe
Q psy1758 134 ARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI--PEEYGGASPFISI 211 (1527)
Q Consensus 134 ~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~--~~~~~~~~~v~~i 211 (1527)
.++++.+|++++|+|+.+|..+|+..+|..+...++|+|+|+||+|+.+++..++..++...... .......+|++++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~ 161 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYA 161 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEec
Confidence 99999999999999999999999999999999999999999999999876555544433222110 0011123689999
Q ss_pred eccCCC----------ChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecce-
Q psy1758 212 SAKTGV----------GINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGAS- 280 (1527)
Q Consensus 212 SAktg~----------gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~- 280 (1527)
||++|. |++.||+.+... ...+..+.+.|+.++|++...+++.|++++++|.+|+|++||.|.+.+.
T Consensus 162 SA~~g~~~~~~~~~~~gi~~Lld~Iv~~--lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~ 239 (594)
T TIGR01394 162 SGRAGWASLDLDDPSDNMAPLFDAIVRH--VPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRD 239 (594)
T ss_pred hhhcCcccccCcccccCHHHHHHHHHHh--CCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecCC
Confidence 999996 799999998744 2223334578999999999999999999999999999999999988654
Q ss_pred ----eeeEeEeeccCC---ceeeecCCCcceEecCCCCCCCCCCeEEEe
Q psy1758 281 ----YGRIRSMLNENG---KNILEAGPSIPVEIQGLTKVPFSGEELFVI 322 (1527)
Q Consensus 281 ----~~kVr~i~~~~g---~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~ 322 (1527)
..+|++++...| .++.+|.+|+.+.+.|++++ ..||++...
T Consensus 240 ~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i-~~Gdtl~~~ 287 (594)
T TIGR01394 240 GTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDI-NIGETIADP 287 (594)
T ss_pred CceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCccc-CCCCEEeCC
Confidence 368888887654 67899999999999999876 789988643
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-28 Score=276.60 Aligned_cols=143 Identities=42% Similarity=0.551 Sum_probs=134.7
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCccccccccc--ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
||+|+||+|||||||+++|++.+|.+.+.+.+. .+++|+.+.|++||+|+++...++.|+++++++||||||.+|..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 799999999999999999999999887766655 479999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHh
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFD 1066 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~ 1066 (1527)
+.++++.+|++|+||||.+|+++||+.+|+.+.+.++|+++|+||+|+.+++++.+++++++.+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~ 145 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLG 145 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998888888888887763
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-27 Score=294.39 Aligned_cols=235 Identities=28% Similarity=0.365 Sum_probs=192.9
Q ss_pred CEEEEEecCCCChhHHHHHHHcc---ccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKT---NVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~---~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+|+++||+|||||||+++|++. .+.....+|+|+++....+.+++..++|||||||++|..++..++..+|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 36999999999999999999963 344556689999999988999889999999999999999999999999999999
Q ss_pred EeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 147 VAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 147 vda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
+|++++.++|+.+++..+...++| +|+|+||+|+.+.+.. ....++... .....+...++++++||++|.|++++++
T Consensus 81 VDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~-l~~~~~~~~~~ii~vSA~tG~GI~eL~~ 159 (581)
T TIGR00475 81 VDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQI-LNSYIFLKNAKIFKTSAKTGQGIGELKK 159 (581)
T ss_pred EECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHH-HHHhCCCCCCcEEEEeCCCCCCchhHHH
Confidence 999999999999999999889999 9999999999764321 111122111 0001111247999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCc
Q psy1758 225 NISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSI 302 (1527)
Q Consensus 225 ~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~ 302 (1527)
.+....+..+.. ..+.|++..|.+++..+|.|+|++|++.+|++++||.+.++| ...+|++|+. +++++.+|.||+
T Consensus 160 ~L~~l~~~~~~~-~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~-~~~~v~~a~aG~ 237 (581)
T TIGR00475 160 ELKNLLESLDIK-RIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQA-QNQDVEIAYAGQ 237 (581)
T ss_pred HHHHHHHhCCCc-CcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCCCceEEEeEEEE-CCccCCEEECCC
Confidence 997655433322 246789999999999999999999999999999999999976 4589999965 567899999998
Q ss_pred ceEec
Q psy1758 303 PVEIQ 307 (1527)
Q Consensus 303 ~v~I~ 307 (1527)
.+.|.
T Consensus 238 rval~ 242 (581)
T TIGR00475 238 RIALN 242 (581)
T ss_pred EEEEE
Confidence 88774
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-27 Score=263.49 Aligned_cols=279 Identities=24% Similarity=0.339 Sum_probs=232.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec----------------
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---------------- 983 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---------------- 983 (1527)
....+|+..||+|||||||+.+|. +|......-....++|....|-+||.|-+.+..-+-++
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~Lv--tG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLV--TGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEE--ecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 455789999999999999999997 55555544444568899999999999988777766552
Q ss_pred -------CeEEEEEeCCCCCCchHHHHHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCC-CC
Q psy1758 984 -------GTRINIIDTPGHADFGGEVERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN-AR 1053 (1527)
Q Consensus 984 -------~~~iniiDTPGh~df~~ev~~~l--~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~-a~ 1053 (1527)
+..+.|+||-||+.+...+.++| +..|..+|+|.|.+|++-.|++|+..+..+++|+||+++|+|+.. .+
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr 272 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDR 272 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHHH
Confidence 35688999999999999999998 789999999999999999999999999999999999999999854 45
Q ss_pred hhhhHHHHHHHHhhhcc------------------cccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC-
Q psy1758 1054 PEWVVDATFDLFDKLCA------------------TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH- 1114 (1527)
Q Consensus 1054 ~~~v~~~~~~~~~~l~~------------------~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p- 1114 (1527)
...+.+++..++.-.+. ...+.-.|++++|+.+|. |+ ++|+.+...+|..
T Consensus 273 ~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~----------Gl-dlL~e~f~~Lp~rr 341 (527)
T COG5258 273 FQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGE----------GL-DLLDEFFLLLPKRR 341 (527)
T ss_pred HHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCc----------cH-HHHHHHHHhCCccc
Confidence 77888888877743211 011123799999999998 77 6777777888877
Q ss_pred CCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEE-
Q psy1758 1115 KDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL- 1193 (1527)
Q Consensus 1115 ~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIva- 1193 (1527)
..+.++||.|+|.+++...++|.++.|.|.+|.+..||++++.|-.+|+..+.+|++|... +..+++|.||+|+.
T Consensus 342 ~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh----~~rvdsa~aG~iig~ 417 (527)
T COG5258 342 RWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMH----HYRVDSAKAGSIIGI 417 (527)
T ss_pred ccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEe----eEEeccccCCcEEEE
Confidence 4477899999999999999999999999999999999999999887888888899998755 47899999999985
Q ss_pred -Eecce--ecccCCeeeCCCCCCCC
Q psy1758 1194 -ITGIE--EICIGSTICDPSKPNGL 1215 (1527)
Q Consensus 1194 -i~gl~--~~~iGdTi~~~~~~~~l 1215 (1527)
+.|++ .+..|..++....|.+.
T Consensus 418 Al~gv~~e~lerGMVl~~~~~pkaV 442 (527)
T COG5258 418 ALKGVEKEELERGMVLSAGADPKAV 442 (527)
T ss_pred EecccCHHHHhcceEecCCCCchhh
Confidence 56775 48889999876455443
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-27 Score=268.58 Aligned_cols=181 Identities=43% Similarity=0.618 Sum_probs=163.2
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccc--eecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA--RIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~--~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
||+|+||+|+|||||+++|++.+|.+.+.+.+.. +++|+.+.|++||+|+......+.|+++++++||||||.+|..+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 7999999999999999999999999887766554 78899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh-------------
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL------------- 1068 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l------------- 1068 (1527)
+.++++.+|++++|+|+.+|+..|++.+|+.+.+.++|.++|+||+|+.+++++++++++++.|..-
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~ 160 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNI 160 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEeeee
Confidence 9999999999999999999999999999999999999999999999999999999999998877420
Q ss_pred --------------ccccc----------cc-----------------CCcEEEeccccCCcCCCcccccCCChhHHHHH
Q psy1758 1069 --------------CATEE----------QL-----------------DFPVIYTSALHGYANENSKARQGNMIPLFEAI 1107 (1527)
Q Consensus 1069 --------------~~~~~----------~~-----------------~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i 1107 (1527)
...++ .+ -+||+++||.++. |+.+||+.+
T Consensus 161 ~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~----------Gv~~ll~~~ 230 (237)
T cd04168 161 CETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGI----------GIEELLEGI 230 (237)
T ss_pred eeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCc----------CHHHHHHHH
Confidence 00000 00 1799999999998 999999999
Q ss_pred HhhcCCC
Q psy1758 1108 LKYVPVH 1114 (1527)
Q Consensus 1108 ~~~lp~p 1114 (1527)
.+++|+|
T Consensus 231 ~~~~p~~ 237 (237)
T cd04168 231 TKLFPTS 237 (237)
T ss_pred HHhcCCC
Confidence 9999987
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >KOG1145|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-27 Score=273.12 Aligned_cols=251 Identities=29% Similarity=0.349 Sum_probs=205.1
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe-cCeEEEEEeCCCCCCch
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHADFG 999 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~iniiDTPGh~df~ 999 (1527)
+.+-|.|+||+|||||||+++|-+.+-+-... -|||-......+.. +|.+++|+|||||+-|.
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~----------------GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~ 215 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEA----------------GGITQHIGAFTVTLPSGKSITFLDTPGHAAFS 215 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhc----------------CCccceeceEEEecCCCCEEEEecCCcHHHHH
Confidence 56789999999999999999996543222111 35664443333322 68999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
..-.|+...+|.++|||.|.+|+++||.+.+..|+..++|+||.+||+|+++++++.+..++... .+...+..-++++
T Consensus 216 aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~--gi~~E~~GGdVQv 293 (683)
T KOG1145|consen 216 AMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQ--GIVVEDLGGDVQV 293 (683)
T ss_pred HHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHc--CccHHHcCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999988887542 1122222335789
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhh--cCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEe
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKY--VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 1157 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~--lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~ 1157 (1527)
+++||++|. |++.|.+++.-. +-.-..++.+|+.+.|.....|+.+|.++..-|-.|||++|+-+...
T Consensus 294 ipiSAl~g~----------nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~G 363 (683)
T KOG1145|consen 294 IPISALTGE----------NLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVAG 363 (683)
T ss_pred EEeecccCC----------ChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEeccccccccEEEEe
Confidence 999999998 898888877543 22334567899999999999999999999999999999999988764
Q ss_pred cCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceeccc-CCeeeC
Q psy1758 1158 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICI-GSTICD 1208 (1527)
Q Consensus 1158 ~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~i-GdTi~~ 1208 (1527)
.+ -.||..|+-..| .++++|.||.-+-|.|.+++.+ ||-+-.
T Consensus 364 ~~------w~KVr~l~D~nG---k~i~~A~Ps~pv~V~GwkdlP~aGD~vle 406 (683)
T KOG1145|consen 364 KS------WCKVRALFDHNG---KPIDEATPSQPVEVLGWKDLPIAGDEVLE 406 (683)
T ss_pred ch------hhhhhhhhhcCC---CCccccCCCCceEeecccCCCCCCceEEE
Confidence 22 368988887776 5899999999999999998765 888743
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-26 Score=287.98 Aligned_cols=244 Identities=30% Similarity=0.417 Sum_probs=194.6
Q ss_pred EEEEEecCCCChhHHHHHHHccc---cccccCCceeEEEEEEEEEe-CCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTN---VVFSEAGGITQHIGAYNVVT-NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~---~~~~~~~giT~~~~~~~~~~-~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.|+++||+|||||||+++|++.. +......|+|++.+...+.. ++..++|||||||++|...+..++..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 68999999999999999998643 44455679999998877765 456799999999999999999999999999999
Q ss_pred EeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcch-hHHHHHHHhhhcccccccC-CCCcEEEeeccCCCChhHHH
Q psy1758 147 VAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYG-GASPFISISAKTGVGINKLL 223 (1527)
Q Consensus 147 vda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~-~~~~v~~iSAktg~gI~eL~ 223 (1527)
+|+++++++|+.+++..+...++| +|||+||+|+.+.+ ......++... ....+ ...|+|++||++|.|+++|+
T Consensus 82 Vda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~---l~~~~~~~~~ii~VSA~tG~gI~~L~ 158 (614)
T PRK10512 82 VACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAV---LREYGFAEAKLFVTAATEGRGIDALR 158 (614)
T ss_pred EECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHH---HHhcCCCCCcEEEEeCCCCCCCHHHH
Confidence 999999999999999999888988 57999999997532 22222222211 11111 24689999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCC
Q psy1758 224 ENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPS 301 (1527)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~ 301 (1527)
+.|.... ....+.+.|++..|.+++..+|.|+|+++++.+|+|++||.|.+.+ ...+|++|+.+ ++++.+|.||
T Consensus 159 ~~L~~~~---~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~-~~~v~~a~aG 234 (614)
T PRK10512 159 EHLLQLP---EREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRGLHAQ-NQPTEQAQAG 234 (614)
T ss_pred HHHHHhh---ccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCCCCcEEEEEEecC-CcCCCEEeCC
Confidence 9996432 2223356789999999999999999999999999999999998754 35799999654 5689999999
Q ss_pred cceEe--cC-CCC-CCCCCCeEEE
Q psy1758 302 IPVEI--QG-LTK-VPFSGEELFV 321 (1527)
Q Consensus 302 ~~v~I--~g-l~~-~~~~G~~~~~ 321 (1527)
+.+.+ .| ++. -..+|+++..
T Consensus 235 ~rval~l~g~~~~~~i~rGdvl~~ 258 (614)
T PRK10512 235 QRIALNIAGDAEKEQINRGDWLLA 258 (614)
T ss_pred CeEEEEecCCCChhhCCCcCEEeC
Confidence 88766 44 432 2378998763
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-27 Score=258.95 Aligned_cols=190 Identities=28% Similarity=0.386 Sum_probs=152.4
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.||+++||+|||||||+++|++.+....+......+.+|..+.|++||+|+++....+++++++++++|||||.+|..++
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~ 82 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNM 82 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHH
Confidence 58999999999999999999987432221111123578999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCc-cEEEEeccCCCCCC--hhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
.+++..+|++++||||.+|+.+||++++..+.+.++| .|+|+||||+.... .+.+.+++...+..++... -++|+
T Consensus 83 ~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~--~~v~i 160 (195)
T cd01884 83 ITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG--DNTPI 160 (195)
T ss_pred HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc--cCCeE
Confidence 9999999999999999999999999999999999998 56889999996321 2345556777666555432 25799
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
+++||++|.+..+......++..|+++|....|+|
T Consensus 161 ipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~~~~~ 195 (195)
T cd01884 161 VRGSALKALEGDDPNKWVKKILELLDALDSYIPTP 195 (195)
T ss_pred EEeeCccccCCCCCCcchhcHhHHHHHHHhCCCCC
Confidence 99999999854321111124679999998787765
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=271.11 Aligned_cols=249 Identities=27% Similarity=0.365 Sum_probs=212.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc---------------ccccCCceeEEEEEEEEEeCC---eEEEEEeCCChhhH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV---------------VFSEAGGITQHIGAYNVVTNH---GSITFLDTPGHEAF 129 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~---------------~~~~~~giT~~~~~~~~~~~~---~~i~~iDTPG~e~f 129 (1527)
+-.+++|+.|++||||||.++|..... ......|||+......+.|.+ +.+++||||||.+|
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 456899999999999999999854321 233557999999998888887 78999999999999
Q ss_pred HHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEE
Q psy1758 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFI 209 (1527)
Q Consensus 130 ~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 209 (1527)
.....+.+..||+++||+||.+|++.||...+..+...+..+|.|+||+|++.++++++..++.+....+. .+++
T Consensus 139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~-----~~~i 213 (650)
T KOG0462|consen 139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPP-----AEVI 213 (650)
T ss_pred cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc-----cceE
Confidence 99999999999999999999999999999999999999999999999999999999999888876554432 3799
Q ss_pred EeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc---ee-eeEe
Q psy1758 210 SISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA---SY-GRIR 285 (1527)
Q Consensus 210 ~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~---~~-~kVr 285 (1527)
.+|||+|.|+++++++|+.. +++++...+.|++++++++++|.++|.+++++|.+|.+++||.|.+-. .+ .++-
T Consensus 214 ~vSAK~G~~v~~lL~AII~r--VPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~v 291 (650)
T KOG0462|consen 214 YVSAKTGLNVEELLEAIIRR--VPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVV 291 (650)
T ss_pred EEEeccCccHHHHHHHHHhh--CCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEe
Confidence 99999999999999999854 566667788999999999999999999999999999999999987633 33 4666
Q ss_pred EeeccCCceeeecCCCcceEec-CCCCCC--CCCCeEEEeC
Q psy1758 286 SMLNENGKNILEAGPSIPVEIQ-GLTKVP--FSGEELFVIL 323 (1527)
Q Consensus 286 ~i~~~~g~~v~~a~~~~~v~I~-gl~~~~--~~G~~~~~~~ 323 (1527)
.+...+...+.+..+|+++.|. +++.+. .-||.++..+
T Consensus 292 gvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~ 332 (650)
T KOG0462|consen 292 GVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKS 332 (650)
T ss_pred EEeccCceeeeeecccccceeEecccccccccccceeeecc
Confidence 6778888888888888888664 455443 5688777554
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-26 Score=285.62 Aligned_cols=250 Identities=26% Similarity=0.285 Sum_probs=203.5
Q ss_pred CCEEEEEecCCCChhHHHHHHHccc--cc--------------cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHH
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTN--VV--------------FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAM 132 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~--~~--------------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~ 132 (1527)
-.+|+|+||+|||||||+++|.... +. .....|+|+......+.+++.+++|||||||++|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 3579999999999999999998632 21 1234689999999999999999999999999999999
Q ss_pred HHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc--ccccCCCCcEEE
Q psy1758 133 RARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI--PEEYGGASPFIS 210 (1527)
Q Consensus 133 ~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~--~~~~~~~~~v~~ 210 (1527)
+.++++.+|++++|+|+.++...|+..++..+...++|.++|+||+|+..++......++...... .......+|+++
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~ 164 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVY 164 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEE
Confidence 999999999999999999999999999999999999999999999999887766665554433211 111123479999
Q ss_pred eeccCCC----------ChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecce
Q psy1758 211 ISAKTGV----------GINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGAS 280 (1527)
Q Consensus 211 iSAktg~----------gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~ 280 (1527)
+||++|. |+..|++.|... ++.+..+.+.|+.++|+++..+++.|++++++|.+|+|+.||.|++.+.
T Consensus 165 ~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~--iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~ 242 (607)
T PRK10218 165 ASALNGIAGLDHEDMAEDMTPLYQAIVDH--VPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDS 242 (607)
T ss_pred eEhhcCcccCCccccccchHHHHHHHHHh--CCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecC
Confidence 9999998 588888887643 2222234577899999999999999999999999999999999987433
Q ss_pred -----eeeEeEeeccC---CceeeecCCCcceEecCCCCCCCCCCeEEE
Q psy1758 281 -----YGRIRSMLNEN---GKNILEAGPSIPVEIQGLTKVPFSGEELFV 321 (1527)
Q Consensus 281 -----~~kVr~i~~~~---g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~ 321 (1527)
..||.+++... ..++.+|.+|+.+.|+|+++. ..||.+..
T Consensus 243 ~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~-~~GdTl~~ 290 (607)
T PRK10218 243 EGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGEL-NISDTVCD 290 (607)
T ss_pred CCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECcccc-ccCcEEec
Confidence 36777776544 467889999999999999876 78988753
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-27 Score=268.61 Aligned_cols=145 Identities=37% Similarity=0.519 Sum_probs=135.1
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCccccccccc------ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCC
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN------ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPG 994 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~------~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPG 994 (1527)
++|||+|+||+|+|||||+++|++.+|.+.+.+.+. .+++|+.+.|++||+|+......++|++++++||||||
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG 80 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPG 80 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCC
Confidence 369999999999999999999999999988877653 36899999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHH
Q psy1758 995 HADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLF 1065 (1527)
Q Consensus 995 h~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~ 1065 (1527)
|.+|..++.++++.+|++|+|+|++.|+..|+..+|+.+...++|+++|+||+|+.++++.++++++++.|
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l 151 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEEL 151 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988877888887765
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-26 Score=274.87 Aligned_cols=251 Identities=27% Similarity=0.309 Sum_probs=194.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc----------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV----------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~----------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~ 130 (1527)
....+|+++||+|||||||+++|++... ......|+|++.....+.+++..++|||||||++|.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 3457899999999999999999975311 122357999999888888888899999999999999
Q ss_pred HHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchh-HH-HHHHHhhhccccccc-CCCC
Q psy1758 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINL-DR-IKQDLISEQVIPEEY-GGAS 206 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~-~~-~~~~l~~~~~~~~~~-~~~~ 206 (1527)
..+.++++.+|++++|+|+++|+.+|+.+++..+...++| +|+|+||+|+.+.+. .+ ...++.... ....+ ...+
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l-~~~~~~~~~~ 168 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELL-SEYDFPGDDI 168 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHH-HHhCCCcCCc
Confidence 9999999999999999999999999999999999999999 688999999974221 11 111222111 01111 1347
Q ss_pred cEEEeeccCCC--------ChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEec
Q psy1758 207 PFISISAKTGV--------GINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAG 278 (1527)
Q Consensus 207 ~v~~iSAktg~--------gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g 278 (1527)
|++++||++|. ++++|++.+.... .....+.+.|++..|.+++..++.|+|++++|.+|+|++||.|++.
T Consensus 169 ~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l--p~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~ 246 (394)
T PRK12736 169 PVIRGSALKALEGDPKWEDAIMELMDAVDEYI--PTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVEIV 246 (394)
T ss_pred cEEEeeccccccCCCcchhhHHHHHHHHHHhC--CCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEEEe
Confidence 99999999983 5677777775331 2233345678999999999999999999999999999999999874
Q ss_pred c----eeeeEeEeeccCCceeeecCCCcceEe--cCCCCC-CCCCCeEEE
Q psy1758 279 A----SYGRIRSMLNENGKNILEAGPSIPVEI--QGLTKV-PFSGEELFV 321 (1527)
Q Consensus 279 ~----~~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~-~~~G~~~~~ 321 (1527)
+ ...+|++|+. +++.+.+|.||+.+.+ .|++.- -.+|+++..
T Consensus 247 p~~~~~~~~V~sI~~-~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~ 295 (394)
T PRK12736 247 GIKETQKTVVTGVEM-FRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAK 295 (394)
T ss_pred cCCCCeEEEEEEEEE-CCEEccEECCCCEEEEEECCCcHHhCCcceEEec
Confidence 3 3579999976 4678999999998855 666432 268887754
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-25 Score=279.04 Aligned_cols=296 Identities=25% Similarity=0.287 Sum_probs=222.5
Q ss_pred CEEEEEecCCCChhHHHHHHHccccc---------------cccCCceeEEEEEEEEEeC---C--eEEEEEeCCChhhH
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVV---------------FSEAGGITQHIGAYNVVTN---H--GSITFLDTPGHEAF 129 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~---------------~~~~~giT~~~~~~~~~~~---~--~~i~~iDTPG~e~f 129 (1527)
.+|+++||+|||||||+++|...... .....|+|++.....+.|. + ..++|||||||++|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 47999999999999999999764211 1123588888877776663 2 57999999999999
Q ss_pred HHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEE
Q psy1758 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFI 209 (1527)
Q Consensus 130 ~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 209 (1527)
..++.++++.||++|+|+|++++...++.+.|..+...++|+++|+||+|+.+.+......++..... + ...+++
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg----~-~~~~vi 158 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIG----L-DASEAI 158 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhC----C-CcceEE
Confidence 99999999999999999999999999999988888788999999999999976544433333322211 0 112589
Q ss_pred EeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecce--eeeEeEe
Q psy1758 210 SISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRSM 287 (1527)
Q Consensus 210 ~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~i 287 (1527)
++||++|.|+++|+++|... ...+..+.+.|++++|++++.+++.|.+++++|.+|+|+.||.|.+.++ ..+|..+
T Consensus 159 ~vSAktG~GI~~Lle~I~~~--lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i 236 (595)
T TIGR01393 159 LASAKTGIGIEEILEAIVKR--VPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEV 236 (595)
T ss_pred EeeccCCCCHHHHHHHHHHh--CCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCCCeeEEeEE
Confidence 99999999999999999754 2333445678999999999999999999999999999999999977543 4577777
Q ss_pred eccCC--ceeeecCCCcceEe-cCCCCCC--CCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccc
Q psy1758 288 LNENG--KNILEAGPSIPVEI-QGLTKVP--FSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKE 362 (1527)
Q Consensus 288 ~~~~g--~~v~~a~~~~~v~I-~gl~~~~--~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (1527)
....+ .++.++.+|+.+.+ .|++++. ..||++....+. +.+ .+.. . +.
T Consensus 237 ~~~~~~~~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~--~~~--------------------~l~~----~-~~ 289 (595)
T TIGR01393 237 GVFTPKLTKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNP--AKE--------------------PLPG----F-KE 289 (595)
T ss_pred EEecCCceECCEEcCCCEEEEeccccccCccCCCCEEECCCCc--ccc--------------------CCCC----C-cC
Confidence 54333 56788999997766 4665533 689988643221 000 0000 0 01
Q ss_pred cceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEE
Q psy1758 363 KVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVI 399 (1527)
Q Consensus 363 ~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv 399 (1527)
..+.+..-+.+...+..+.|.++|.++..+...+.+-
T Consensus 290 ~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~ 326 (595)
T TIGR01393 290 VKPMVFAGLYPIDTEDYEDLRDALEKLKLNDASLTYE 326 (595)
T ss_pred CCcEEEEEEEECCcccHHHHHHHHHHHhccCCeEEEE
Confidence 1244566788888899999999999998777777663
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-26 Score=259.35 Aligned_cols=248 Identities=30% Similarity=0.386 Sum_probs=207.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccccc----------------cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHH
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVV----------------FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMR 133 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~----------------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~ 133 (1527)
.+|+|+.|++||||||++.|...+.. .....|||+-.....+.|++.+|+++|||||.+|....
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 47999999999999999999765421 22345999988888999999999999999999999999
Q ss_pred HhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc--ccccCCCCcEEEe
Q psy1758 134 ARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI--PEEYGGASPFISI 211 (1527)
Q Consensus 134 ~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~--~~~~~~~~~v~~i 211 (1527)
.|.++-.|+++|++||.+|.+|||+-.++.+...+.+.|||+||+|++++.++.+..+....... .....-.+|++..
T Consensus 86 ERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYA 165 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYA 165 (603)
T ss_pred hhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEe
Confidence 99999999999999999999999999999999999999999999999999888877665432211 1111124799999
Q ss_pred eccCCC----------ChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEe----
Q psy1758 212 SAKTGV----------GINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVA---- 277 (1527)
Q Consensus 212 SAktg~----------gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~---- 277 (1527)
||+.|. ++..||+.|... .+.+..+.+.|++.++..--++.+.|++..++|.+|++++|+.+..
T Consensus 166 S~~~G~a~~~~~~~~~~m~pLfe~I~~h--vp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~ 243 (603)
T COG1217 166 SARNGTASLDPEDEADDMAPLFETILDH--VPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSD 243 (603)
T ss_pred eccCceeccCccccccchhHHHHHHHHh--CCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcCC
Confidence 999884 788899998754 3455566788999999998999999999999999999999999865
Q ss_pred c-ceeeeEeEeeccCC---ceeeecCCCcceEecCCCCCCCCCCeEE
Q psy1758 278 G-ASYGRIRSMLNENG---KNILEAGPSIPVEIQGLTKVPFSGEELF 320 (1527)
Q Consensus 278 g-~~~~kVr~i~~~~g---~~v~~a~~~~~v~I~gl~~~~~~G~~~~ 320 (1527)
| ...+||..++...| .++.+|.+|+.|+|+|+.++ .-||.+.
T Consensus 244 g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~-~igdTi~ 289 (603)
T COG1217 244 GTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDI-NIGDTIC 289 (603)
T ss_pred CcEEeeEEEeeeeccceeeeecccccccCEEEEcCcccc-ccccccc
Confidence 2 24689999988887 45789999999999999876 4555444
|
|
| >TIGR00082 rbfA ribosome-binding factor A | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-27 Score=231.67 Aligned_cols=112 Identities=31% Similarity=0.583 Sum_probs=106.7
Q ss_pred cccccchhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecCChhhHHHHHHHHHHhhHHHHHHHhcc
Q psy1758 538 ECERLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLSKK 617 (1527)
Q Consensus 538 ecgr~~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~~~~~~~~~~~~l~~~~g~ir~~l~~~ 617 (1527)
+..|..|+++.++++|+++++++++||++++||||+|++|+||++|+||||++|++..+++++++|++++||||+.||++
T Consensus 2 ~~~R~~Rv~~~i~~eis~il~~~i~dp~~~~vtVt~V~lS~Dl~~AkVyvs~~~~~~~~~~~l~~L~~~~g~iR~~l~k~ 81 (114)
T TIGR00082 2 ASYRKERVESDIIREINRILIREIKDPRVGMLTVTKVEVSKDLQHAKVFVDCYGDEEAIDRVVKALNKAKGFIRSLLGQA 81 (114)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEeEEEECCCCCEEEEEEEECCChhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 44578899999999999999999999999999999999999999999999999987777899999999999999999999
Q ss_pred cccccCCeEEEEeccchhhHHHHHHHHhhccc
Q psy1758 618 LHIHTLPILNFFYDNSIENAMMISKLIDGIKY 649 (1527)
Q Consensus 618 l~lr~~P~l~F~~D~s~~~~~~i~~ll~~i~~ 649 (1527)
|+||++|+|+|+||+|+|++.+|++||+++++
T Consensus 82 l~lR~~P~L~F~~D~s~e~~~~i~~ll~~i~~ 113 (114)
T TIGR00082 82 MRLRKTPELHFVKDNSLDKGMRIENLINSLKK 113 (114)
T ss_pred CCceECCEEEEEecCcHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999864
|
Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'terminal helix region of 16S rRNA. Mutants lacking rbfA have a cold-sensitive phenotype. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-26 Score=251.01 Aligned_cols=194 Identities=65% Similarity=1.030 Sum_probs=173.9
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
.+|||+++|++|+|||||+++|++.++.+.....+..+++|..+.|+++|+|+..+...+.++++++++||||||.+|..
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 80 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGG 80 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHH
Confidence 37999999999999999999999887777766666678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEE
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVI 1080 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi 1080 (1527)
.+..+++.+|++++|+|+++++.+++..++..+...++|+++|+||+|+...+.+...+++.+.+..++....+.++|++
T Consensus 81 ~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 160 (194)
T cd01891 81 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVL 160 (194)
T ss_pred HHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEE
Confidence 99999999999999999999999999888888888899999999999998777777788888877666555556678999
Q ss_pred EeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1081 YTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1081 ~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
++||++|++..+......++.+|++.|.+++|.|
T Consensus 161 ~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (194)
T cd01891 161 YASAKNGWASLNLEDPSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred EeehhccccccccccchhhHHHHHHHHHhcCCCC
Confidence 9999999987777777789999999999999987
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=270.05 Aligned_cols=251 Identities=28% Similarity=0.323 Sum_probs=193.6
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcc-------cc---------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKT-------NV---------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~-------~~---------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~ 130 (1527)
....+|+++||+|||||||+++|++. .+ ......|+|++.....+.+++.+++|+|||||++|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 34578999999999999999999752 11 122357999999888888888899999999999999
Q ss_pred HHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEEcccCCcchh--HHHHHHHhhhccccccc-CCCC
Q psy1758 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLI-VAINKIDKLDINL--DRIKQDLISEQVIPEEY-GGAS 206 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiI-vviNKiDl~~~~~--~~~~~~l~~~~~~~~~~-~~~~ 206 (1527)
..+.+++..+|++++|+|+.++...|+.+++..+...++|.+ +|+||+|+.+... +....++..... ...+ +..+
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~-~~~~~~~~~ 168 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS-KYDFPGDDT 168 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH-HcCCCcCce
Confidence 999999999999999999999999999999999999999955 6899999974211 111112211111 1111 1347
Q ss_pred cEEEeeccCCC----------ChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEE
Q psy1758 207 PFISISAKTGV----------GINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVV 276 (1527)
Q Consensus 207 ~v~~iSAktg~----------gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv 276 (1527)
+++++||++|. ++.+|++.|.... .......+.|++..|.+++..++.|+|++++|.+|+|++||.|.
T Consensus 169 ~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~--~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~ 246 (396)
T PRK12735 169 PIIRGSALKALEGDDDEEWEAKILELMDAVDSYI--PEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVE 246 (396)
T ss_pred eEEecchhccccCCCCCcccccHHHHHHHHHhcC--CCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEEE
Confidence 99999999995 6777888775431 12233456789999999999999999999999999999999998
Q ss_pred ecc----eeeeEeEeeccCCceeeecCCCcceEe--cCCCCCC-CCCCeEEE
Q psy1758 277 AGA----SYGRIRSMLNENGKNILEAGPSIPVEI--QGLTKVP-FSGEELFV 321 (1527)
Q Consensus 277 ~g~----~~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~~-~~G~~~~~ 321 (1527)
+.+ ...+|++|.. +++.+.+|.||+.+.+ .|++.-. .+|+++..
T Consensus 247 i~p~~~~~~~~VksI~~-~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~ 297 (396)
T PRK12735 247 IVGIKETQKTTVTGVEM-FRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAK 297 (396)
T ss_pred EecCCCCeEEEEEEEEE-CCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEc
Confidence 754 3578999975 4678999999998777 5554322 68887764
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.8e-26 Score=247.94 Aligned_cols=256 Identities=27% Similarity=0.355 Sum_probs=197.3
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe------------------c
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY------------------N 983 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~------------------~ 983 (1527)
-.||+.+||+|||||||+.+|..- -.|.+..|-+|||||...++.... .
T Consensus 10 ~vNIG~vGHVdHGKtTlv~AlsGv-------------wT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~ 76 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALSGV-------------WTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCP 76 (415)
T ss_pred ceEeeeeeecccchhhheehhhce-------------eeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCC
Confidence 469999999999999999999543 127888999999999877654322 0
Q ss_pred --------CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC-CChhHHHHHHHHHHcCCccEEE-EeccCCCCCC
Q psy1758 984 --------GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTRFVTRKALKLGFKPIVV-VNKIDRSNAR 1053 (1527)
Q Consensus 984 --------~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G-~~~qt~~~~~~~~~~glp~Ivv-iNKiD~~~a~ 1053 (1527)
-+++.|+|.|||.-+...|.++....|+|||||+|++. ++|||++|+..+.-.|++.|++ -||+|+..
T Consensus 77 ~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~-- 154 (415)
T COG5257 77 NCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS-- 154 (415)
T ss_pred CCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceec--
Confidence 14789999999999999999999999999999999986 8999999999999999887655 69999965
Q ss_pred hhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeec--
Q psy1758 1054 PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEY-- 1131 (1527)
Q Consensus 1054 ~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~-- 1131 (1527)
.++.++.-++....+. ....-+.|++++||..+. |++.|+++|.+++|.|..|.+.|++|+|...+-
T Consensus 155 ~E~AlE~y~qIk~Fvk-Gt~Ae~aPIIPiSA~~~~----------NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFDVN 223 (415)
T COG5257 155 RERALENYEQIKEFVK-GTVAENAPIIPISAQHKA----------NIDALIEAIEKYIPTPERDLDKPPRMYVARSFDVN 223 (415)
T ss_pred HHHHHHHHHHHHHHhc-ccccCCCceeeehhhhcc----------CHHHHHHHHHHhCCCCccCCCCCceEEEEeecccC
Confidence 3444444333322222 223345799999999998 999999999999999999999999999977553
Q ss_pred ------cccCceEEEEEeecCccccCCEEEEecCC----CCC----cCcceeeeEEEeecCceeEeeeeecCCEEEE-ec
Q psy1758 1132 ------SSYLGKIGIGRILSGRIKSLQDVVIMNGP----DDK----PNKAKINQIRVFKGLDRVLVNEALSGDIVLI-TG 1196 (1527)
Q Consensus 1132 ------d~~~G~v~~grV~sG~lk~Gd~v~~~~~~----~g~----~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai-~g 1196 (1527)
+...|-+.-|.+.+|.++.||++.+.|.- +|+ ....+|.+|+ . ...++++|.+|-.++| ++
T Consensus 224 kPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~---a-g~~~~~ea~PGGLvgvGT~ 299 (415)
T COG5257 224 KPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQ---A-GGEDVEEARPGGLVGVGTK 299 (415)
T ss_pred CCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEE---e-CCeeeeeccCCceEEEecc
Confidence 34578889999999999999999986541 121 1112455443 1 2468999999999987 56
Q ss_pred cee-cccCCeee
Q psy1758 1197 IEE-ICIGSTIC 1207 (1527)
Q Consensus 1197 l~~-~~iGdTi~ 1207 (1527)
++- +..+|-|+
T Consensus 300 lDP~ltKaD~L~ 311 (415)
T COG5257 300 LDPTLTKADALV 311 (415)
T ss_pred cCcchhhhhhhc
Confidence 652 33355543
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=270.38 Aligned_cols=254 Identities=26% Similarity=0.276 Sum_probs=189.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc----------------cccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN----------------VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~----------------~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~ 130 (1527)
.+..+|+++||+|||||||+++|.+.. .......|+|++.....+..++.+++|||||||++|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 345789999999999999999997320 1223347999999888888888899999999999999
Q ss_pred HHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEEcccCCcchh--HHHHHHHhhhcccccccCCCCc
Q psy1758 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLI-VAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASP 207 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiI-vviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~ 207 (1527)
..+.+++..+|++++|+|+++|..+|+.+++..+...++|.+ +|+||+|+.+... +....++..........+..+|
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 169 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTP 169 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCcc
Confidence 999999999999999999999999999999999999999965 6899999975321 1111122111111100113479
Q ss_pred EEEeeccCCC-ChhHHHHHHHHHHH----HH-hhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--
Q psy1758 208 FISISAKTGV-GINKLLENISLQAE----IL-ELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA-- 279 (1527)
Q Consensus 208 v~~iSAktg~-gI~eL~~~l~~~~~----~~-~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~-- 279 (1527)
++++||++|. |..++.+.+....+ .. ....+.+.|++..|.+++..++.|+|++++|.+|+|++||.|.+.+
T Consensus 170 ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~ 249 (394)
T TIGR00485 170 IIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLK 249 (394)
T ss_pred EEECccccccccCCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCC
Confidence 9999999985 44433332221111 11 1223356789999999999999999999999999999999998743
Q ss_pred --eeeeEeEeeccCCceeeecCCCcceEe--cCCCCC-CCCCCeEEE
Q psy1758 280 --SYGRIRSMLNENGKNILEAGPSIPVEI--QGLTKV-PFSGEELFV 321 (1527)
Q Consensus 280 --~~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~-~~~G~~~~~ 321 (1527)
...+|++|+.+ ++++.+|.+|+.+.+ .|++.. -.+|+++..
T Consensus 250 ~~~~~~VksI~~~-~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~ 295 (394)
T TIGR00485 250 DTRKTTVTGVEMF-RKELDEGRAGDNVGLLLRGIKREEIERGMVLAK 295 (394)
T ss_pred CCcEEEEEEEEEC-CeEEEEECCCCEEEEEeCCccHHHCCccEEEec
Confidence 35789999764 578999999998865 565432 267887753
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-26 Score=262.03 Aligned_cols=247 Identities=28% Similarity=0.356 Sum_probs=194.3
Q ss_pred CCEEEEEecCCCChhHHHHHHHcccc---------------ccccCCceeEEEEEEEEEeCC-----eEEEEEeCCChhh
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNV---------------VFSEAGGITQHIGAYNVVTNH-----GSITFLDTPGHEA 128 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~---------------~~~~~~giT~~~~~~~~~~~~-----~~i~~iDTPG~e~ 128 (1527)
-.+.+|+.|.+||||||.++|..... ......|||+......+.+.. +.++|+|||||.+
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD 88 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 88 (603)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccc
Confidence 34689999999999999999965322 234557999998888776643 5789999999999
Q ss_pred HHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcE
Q psy1758 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPF 208 (1527)
Q Consensus 129 f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v 208 (1527)
|.....|++..|.+++||+||+.|+..||......+...+..+|-|+||+||+.++++++.+++........ ...
T Consensus 89 FsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~-----~da 163 (603)
T COG0481 89 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA-----SDA 163 (603)
T ss_pred eEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc-----chh
Confidence 999999999999999999999999999999999999999999999999999999999999988765543322 357
Q ss_pred EEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEe---cceeeeEe
Q psy1758 209 ISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVA---GASYGRIR 285 (1527)
Q Consensus 209 ~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~---g~~~~kVr 285 (1527)
+.+|||+|.||++++++|+.. +++++.+.+.|.+++++++++|..+|.|+.++|.+|++++||.+.+ |..+ .|.
T Consensus 164 v~~SAKtG~gI~~iLe~Iv~~--iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y-~V~ 240 (603)
T COG0481 164 VLVSAKTGIGIEDVLEAIVEK--IPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEY-EVD 240 (603)
T ss_pred eeEecccCCCHHHHHHHHHhh--CCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEEecCCEE-EEE
Confidence 889999999999999999844 5666677889999999999999999999999999999999996644 1111 111
Q ss_pred --EeeccCCceeeecCCCcceE-ecCCCCCC--CCCCeEEEeC
Q psy1758 286 --SMLNENGKNILEAGPSIPVE-IQGLTKVP--FSGEELFVIL 323 (1527)
Q Consensus 286 --~i~~~~g~~v~~a~~~~~v~-I~gl~~~~--~~G~~~~~~~ 323 (1527)
.++...........+|+.+- ++|++++. ..||.+...+
T Consensus 241 evGvftP~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~ 283 (603)
T COG0481 241 EVGIFTPKMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLAS 283 (603)
T ss_pred EEeeccCCccccccccCCceeEEEEeeeecccCcccceEeccC
Confidence 12233334444555565543 34555543 4566555333
|
|
| >PRK13818 ribosome-binding factor A; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=231.24 Aligned_cols=112 Identities=33% Similarity=0.532 Sum_probs=104.3
Q ss_pred ccchhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecCCh-hhHHHHHHHHHHhhHHHHHHHhcccc
Q psy1758 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKD-ISIKNILDNLSKAKNYIRFKLSKKLH 619 (1527)
Q Consensus 541 r~~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~~~-~~~~~~~~~l~~~~g~ir~~l~~~l~ 619 (1527)
|..|++++|+++|+.+++++++||++++||||+|+||+||++|+||||++|++ ..+++++++|++|+||||+.||++|+
T Consensus 4 R~~Rv~~~i~reis~ii~~ei~Dprl~~vtVt~V~lS~Dl~~AkVyvs~~~~~~~~~~~~~~~L~~a~g~iR~~la~~l~ 83 (121)
T PRK13818 4 RIGRVEGEILRELTKILRKNIRDPRLSDVTITAVECTNDLSYATVYYSLLTEDEAKEKEVQEGLEKAKGMMRHLLGQTLT 83 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCCcCceEEeEEEECCCCCEEEEEEEeCCCchhHHHHHHHHHHHhHHHHHHHHHhhCC
Confidence 66789999999999999999999999999999999999999999999999844 34567999999999999999999999
Q ss_pred cccCCeEEEEeccchhhHHHHHHHHhhcccccc
Q psy1758 620 IHTLPILNFFYDNSIENAMMISKLIDGIKYCMQ 652 (1527)
Q Consensus 620 lr~~P~l~F~~D~s~~~~~~i~~ll~~i~~~~~ 652 (1527)
||++|+|+|+||+|+|++.+|++||++++.+.+
T Consensus 84 lR~~P~L~F~~D~s~e~~~~I~~Ll~~i~~~~~ 116 (121)
T PRK13818 84 VYKVPELIFKRDNSVAYGSKIDRLIAEVKKQDQ 116 (121)
T ss_pred CeECCEEEEEeCCChHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999976533
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=267.34 Aligned_cols=252 Identities=27% Similarity=0.314 Sum_probs=204.2
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec---CeEEEEEeCCCCCCc
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---GTRINIIDTPGHADF 998 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---~~~iniiDTPGh~df 998 (1527)
.+-|+|+||+|||||||++.+-..+-... -.-|||-....+.+.++ ...+.|+|||||+-|
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~----------------EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAF 68 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAG----------------EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAF 68 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccc----------------cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHH
Confidence 35799999999999999999954321111 12478888888888884 468999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
...-.|+.+.+|.|+||||+.+|++|||.+.++.++..+.|++|++||||+++++++.+..++.+. .+....+.-+..
T Consensus 69 t~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~--gl~~E~~gg~v~ 146 (509)
T COG0532 69 TAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY--GLVPEEWGGDVI 146 (509)
T ss_pred HHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc--CCCHhhcCCceE
Confidence 999999999999999999999999999999999999999999999999999999999888887663 333344445578
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhc--CCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEE
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYV--PVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVI 1156 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l--p~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~ 1156 (1527)
++++||++|. |+++||+.+.-.. -.-..+++.|....|....-+.+.|.++..-|++|+|++||.|.+
T Consensus 147 ~VpvSA~tg~----------Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~ 216 (509)
T COG0532 147 FVPVSAKTGE----------GIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVA 216 (509)
T ss_pred EEEeeccCCC----------CHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEecCCEEEE
Confidence 9999999999 9999999886432 133456788999999999999999999999999999999999998
Q ss_pred ecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecc-cCCeeeCCC
Q psy1758 1157 MNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC-IGSTICDPS 1210 (1527)
Q Consensus 1157 ~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~-iGdTi~~~~ 1210 (1527)
... ..+|..++.-.| .++..+.++--+.+.|++++. .||.....+
T Consensus 217 g~~------~g~I~t~v~~~~---~~i~~a~ps~~v~i~g~~evp~Ag~~~~v~~ 262 (509)
T COG0532 217 GGE------YGRVRTMVDDLG---KPIKEAGPSKPVEILGLSEVPAAGDVFIVVK 262 (509)
T ss_pred ccC------CCceEEeehhcC---CCccccCCCCCeEEeccccccccCceEEecC
Confidence 655 245666554443 567778877777788887755 366665433
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=276.70 Aligned_cols=252 Identities=30% Similarity=0.403 Sum_probs=190.8
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-------------------------------ccccCCceeEEEEEEEEEeCCe
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-------------------------------VFSEAGGITQHIGAYNVVTNHG 116 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-------------------------------~~~~~~giT~~~~~~~~~~~~~ 116 (1527)
...+|+++||+|||||||+++|..... .....+|+|++.....+++++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 346799999999999999999974321 1122579999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCC--CCcHHHHHHHHHHHHcCC-CEEEEEEcccCCcchhHH---HHH
Q psy1758 117 SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADD--GVMPQTREAIAHAKISGV-PLIVAINKIDKLDINLDR---IKQ 190 (1527)
Q Consensus 117 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~--g~~~qt~e~i~~~~~~~v-piIvviNKiDl~~~~~~~---~~~ 190 (1527)
+++|||||||++|...+..+++.+|++++|+|+++ +...++.+++..+...++ |+++|+||+|+.+.+.+. ...
T Consensus 85 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~ 164 (425)
T PRK12317 85 YFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVKE 164 (425)
T ss_pred EEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHHH
Confidence 99999999999999888888999999999999999 889999999988888887 489999999997633222 122
Q ss_pred HHhhhcccccccC-CCCcEEEeeccCCCChhHHHHHH--------HHH-HHHHhhcCCCCCCCceEEEEEeecCCCceEE
Q psy1758 191 DLISEQVIPEEYG-GASPFISISAKTGVGINKLLENI--------SLQ-AEILELKAPVTTPAKGVIIESRLDKGKGPVA 260 (1527)
Q Consensus 191 ~l~~~~~~~~~~~-~~~~v~~iSAktg~gI~eL~~~l--------~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~ 260 (1527)
++..... ...+. ..++++++||++|.|++++.+.+ ... ..+.....+.+.|++..|.+++..++.|+|+
T Consensus 165 ~i~~~l~-~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~~~~g~G~vv 243 (425)
T PRK12317 165 EVSKLLK-MVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVYSISGVGTVP 243 (425)
T ss_pred HHHHHHH-hhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhcCCCCccccCCCcEEEEEEEEeeCCCeEEE
Confidence 2211110 00111 23689999999999999854322 111 1111222334678999999999999999999
Q ss_pred EEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEec--CCCCCC-CCCCeEEE
Q psy1758 261 TVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEIQ--GLTKVP-FSGEELFV 321 (1527)
Q Consensus 261 ~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I~--gl~~~~-~~G~~~~~ 321 (1527)
+++|.+|+|++||.|.+++ ...+|++|..+ ++.+..|.||+.+.+. +++... .+|+++..
T Consensus 244 ~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~-~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~ 308 (425)
T PRK12317 244 VGRVETGVLKVGDKVVFMPAGVVGEVKSIEMH-HEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGH 308 (425)
T ss_pred EEEEeeccEecCCEEEECCCCCeEEEEEEEEC-CcccCEECCCCeEEEEECCCCHHHccCccEecC
Confidence 9999999999999999865 45799999765 5679999999988663 443211 57887653
|
|
| >KOG0459|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-26 Score=257.96 Aligned_cols=284 Identities=25% Similarity=0.322 Sum_probs=226.2
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCcccccc---------------cccceecchhhhhcccceeEeeeeEEEEe
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERGITIFSKNCSIEY 982 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~---------------~~~~~~~D~~~~E~erGiTi~~~~~~~~~ 982 (1527)
++....|+.++||+|+||||+-+.+++++|.+.+.. .-.+|+||++..||++|-|+....+.|+.
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 346778999999999999999999999988776321 12248999999999999999999999999
Q ss_pred cCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCCh-------hHHHHHHHHHHcCCccE-EEEeccCCCCC--
Q psy1758 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP-------QTRFVTRKALKLGFKPI-VVVNKIDRSNA-- 1052 (1527)
Q Consensus 983 ~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~-------qt~~~~~~~~~~glp~I-vviNKiD~~~a-- 1052 (1527)
...+++|.|+|||..|..+|..++++||.++||++|..|.+. ||+++..+++..|+..+ +++||||-+..
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 999999999999999999999999999999999999876543 99999999999998875 56899998754
Q ss_pred ---ChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcc---cccCCChhHHHHHHhhcCCCCCCCCCCceeEE
Q psy1758 1053 ---RPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSK---ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQI 1126 (1527)
Q Consensus 1053 ---~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~---~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V 1126 (1527)
++++..+.+...+..++.... -+.-.+++|+.+|....+.. -.+.-...+|..+.+ +|.+..+.++||++.|
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~-~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~-l~~~~R~~~GP~~~pI 312 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPK-PDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDE-LPHLERILNGPIRCPV 312 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCC-CCceeeecccccccchhhcccccCCcccCCccceehhc-cCcccccCCCCEEeeh
Confidence 345555555555554443322 23447889999997433222 122223345666644 8888889999999999
Q ss_pred EeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEE--Eecce--eccc
Q psy1758 1127 ISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL--ITGIE--EICI 1202 (1527)
Q Consensus 1127 ~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIva--i~gl~--~~~i 1202 (1527)
.+-+.| .|++.+|+|.||++++||++.++|. .....|.+|+.- .++++.+.+||.+- +.|++ ++..
T Consensus 313 ~~Kykd--mGTvv~GKvEsGsi~kg~~lvvMPn----k~~veV~~I~~d----dvE~~~~~pGenvk~rlkgieeedi~~ 382 (501)
T KOG0459|consen 313 ANKYKD--MGTVVGGKVESGSIKKGQQLVVMPN----KTNVEVLGIYSD----DVETDRVAPGENVKLRLKGIEEEDISP 382 (501)
T ss_pred hhhccc--cceEEEEEecccceecCCeEEEccC----CcceEEEEEecc----cceeeeccCCcceEEEecccchhhccC
Confidence 877665 5899999999999999999999987 345677777643 57899999999985 56875 6888
Q ss_pred CCeeeCCCCCC
Q psy1758 1203 GSTICDPSKPN 1213 (1527)
Q Consensus 1203 GdTi~~~~~~~ 1213 (1527)
|-.||++.++.
T Consensus 383 GfiL~~~~n~~ 393 (501)
T KOG0459|consen 383 GFILCSPNNPC 393 (501)
T ss_pred ceEEecCCCcc
Confidence 99999998864
|
|
| >PRK13815 ribosome-binding factor A; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=230.84 Aligned_cols=110 Identities=33% Similarity=0.452 Sum_probs=105.6
Q ss_pred ccchhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecCChhhHHHHHHHHHHhhHHHHHHHhccccc
Q psy1758 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLSKKLHI 620 (1527)
Q Consensus 541 r~~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~~~~~~~~~~~~l~~~~g~ir~~l~~~l~l 620 (1527)
|..|+++.|+++|+++++++++||++.+||||+|+||+||++|+||||+++++..+++++++|++|+||||+.||++|+|
T Consensus 4 R~~Rv~~~Ir~eis~il~~~i~dprl~~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L~~a~g~iR~~l~~~l~l 83 (122)
T PRK13815 4 RSEKVAEAIHELISGLLVKGLKDPRIGFVTITGVKVTDDLHLATIYFTVIGDDEAKKSTEAGLNSARGFIRKELGKVLRM 83 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCCCCceEEeEEEECCCCCEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 67789999999999999999999999999999999999999999999999877777889999999999999999999999
Q ss_pred ccCCeEEEEeccchhhHHHHHHHHhhcccc
Q psy1758 621 HTLPILNFFYDNSIENAMMISKLIDGIKYC 650 (1527)
Q Consensus 621 r~~P~l~F~~D~s~~~~~~i~~ll~~i~~~ 650 (1527)
|++|+|+|+||+|+|++.+|++||++++.+
T Consensus 84 R~~PeL~F~~D~s~e~~~~I~~lL~~i~~~ 113 (122)
T PRK13815 84 RYAPELIFKYDESQEYGNRIDSLLKEIGTE 113 (122)
T ss_pred eECCEEEEEECCChHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999865
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=271.41 Aligned_cols=248 Identities=27% Similarity=0.330 Sum_probs=192.8
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-------------------------------ccccCCceeEEEEEEEEEeCCe
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-------------------------------VFSEAGGITQHIGAYNVVTNHG 116 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-------------------------------~~~~~~giT~~~~~~~~~~~~~ 116 (1527)
...+|+++||+|+|||||+.+|..... ......|+|++.....+.+++.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 346799999999999999998864210 1223469999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCC-------cHHHHHHHHHHHHcCCC-EEEEEEcccCCc--ch--
Q psy1758 117 SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-------MPQTREAIAHAKISGVP-LIVAINKIDKLD--IN-- 184 (1527)
Q Consensus 117 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-------~~qt~e~i~~~~~~~vp-iIvviNKiDl~~--~~-- 184 (1527)
.++|+|||||++|...+..+++.+|++++|+|+++|+ ..||.+++..+...++| +|+|+||+|+.. .+
T Consensus 86 ~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~ 165 (446)
T PTZ00141 86 YFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQE 165 (446)
T ss_pred EEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhHH
Confidence 9999999999999999999999999999999999987 47999999999999998 679999999542 22
Q ss_pred -hHHHHHHHhhhcccccccC-CCCcEEEeeccCCCChhH------------HHHHHHHHHHHHhhcCCCCCCCceEEEEE
Q psy1758 185 -LDRIKQDLISEQVIPEEYG-GASPFISISAKTGVGINK------------LLENISLQAEILELKAPVTTPAKGVIIES 250 (1527)
Q Consensus 185 -~~~~~~~l~~~~~~~~~~~-~~~~v~~iSAktg~gI~e------------L~~~l~~~~~~~~~~~~~~~p~~~~v~~~ 250 (1527)
.+++..++...... ..+. ..+|++++||.+|.|+.+ |++.|.. +.....+.+.|++..|.++
T Consensus 166 ~~~~i~~~i~~~l~~-~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~---~~~~~~~~~~p~r~~I~~v 241 (446)
T PTZ00141 166 RYDEIKKEVSAYLKK-VGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDT---LEPPKRPVDKPLRLPLQDV 241 (446)
T ss_pred HHHHHHHHHHHHHHh-cCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhC---CCCCCcCCCCCeEEEEEEE
Confidence 23333333322111 1111 247999999999999974 5555532 1222334567899999999
Q ss_pred eecCCCceEEEEEeeccEEEeccEEEecce--eeeEeEeeccCCceeeecCCCcceEecCCCCCC----CCCCeEEE
Q psy1758 251 RLDKGKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRSMLNENGKNILEAGPSIPVEIQGLTKVP----FSGEELFV 321 (1527)
Q Consensus 251 ~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~----~~G~~~~~ 321 (1527)
+..++.|++++++|.+|+|++||.|++.+. ..+|++|..+ +..+.+|.+|+.+.+. |+.+. .+|+++..
T Consensus 242 ~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~-~~~~~~a~aG~~v~i~-L~~i~~~~v~rG~vl~~ 316 (446)
T PTZ00141 242 YKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMH-HEQLAEAVPGDNVGFN-VKNVSVKDIKRGYVASD 316 (446)
T ss_pred EecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEec-CcccCEECCCCEEEEE-ECCCCHHHcCCceEEec
Confidence 999999999999999999999999998764 5799999765 4678999999888774 33321 57887764
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-25 Score=269.77 Aligned_cols=247 Identities=25% Similarity=0.306 Sum_probs=190.7
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-------------------------------ccccCCceeEEEEEEEEEeCCe
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-------------------------------VFSEAGGITQHIGAYNVVTNHG 116 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-------------------------------~~~~~~giT~~~~~~~~~~~~~ 116 (1527)
...+|+++||+|+|||||+.+|..... ......|+|++.....+.++++
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 346799999999999999998853210 1122359999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCC-EEEEEEcccCCcc-----
Q psy1758 117 SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVM-------PQTREAIAHAKISGVP-LIVAINKIDKLDI----- 183 (1527)
Q Consensus 117 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~-------~qt~e~i~~~~~~~vp-iIvviNKiDl~~~----- 183 (1527)
.++|+|||||++|...+..+++.+|++|+|+|+++|.. .|+.+++..+...++| +|+|+||+|+.+.
T Consensus 86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~ 165 (447)
T PLN00043 86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKA 165 (447)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHH
Confidence 99999999999999999999999999999999999743 7999999999999996 7889999998732
Q ss_pred hhHHHHHHHhhhcccccccC---CCCcEEEeeccCCCChhH------------HHHHHHHHHHHHhhcCCCCCCCceEEE
Q psy1758 184 NLDRIKQDLISEQVIPEEYG---GASPFISISAKTGVGINK------------LLENISLQAEILELKAPVTTPAKGVII 248 (1527)
Q Consensus 184 ~~~~~~~~l~~~~~~~~~~~---~~~~v~~iSAktg~gI~e------------L~~~l~~~~~~~~~~~~~~~p~~~~v~ 248 (1527)
..++...++... ....+ ..++++++||++|+|+.+ |++.|. .+.....+.+.|++..|.
T Consensus 166 ~~~~i~~ei~~~---l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~---~i~~p~~~~~~plr~~I~ 239 (447)
T PLN00043 166 RYDEIVKEVSSY---LKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALD---QINEPKRPSDKPLRLPLQ 239 (447)
T ss_pred HHHHHHHHHHHH---HHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHh---hcCCCccccCCCcEEEEE
Confidence 122223332221 11111 246899999999999864 444442 122333445779999999
Q ss_pred EEeecCCCceEEEEEeeccEEEeccEEEecce--eeeEeEeeccCCceeeecCCCcceEec--CCCCC-CCCCCeEEE
Q psy1758 249 ESRLDKGKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRSMLNENGKNILEAGPSIPVEIQ--GLTKV-PFSGEELFV 321 (1527)
Q Consensus 249 ~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~i~~~~g~~v~~a~~~~~v~I~--gl~~~-~~~G~~~~~ 321 (1527)
+++..++.|+|++++|.+|+|++||.|++++. ..+|++|..+ +..+.+|.||+.+.+. ++... -.+|+++.-
T Consensus 240 ~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~-~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~ 316 (447)
T PLN00043 240 DVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMH-HESLQEALPGDNVGFNVKNVAVKDLKRGYVASN 316 (447)
T ss_pred EEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEEC-CeEeCEecCCCeEEEEECCCCHhhCCCccEEcc
Confidence 99999999999999999999999999999875 5799999764 5689999999877664 33221 268887653
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-25 Score=268.84 Aligned_cols=252 Identities=29% Similarity=0.319 Sum_probs=192.6
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcc------c----------cccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKT------N----------VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~------~----------~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~ 130 (1527)
....+|+++||+|||||||+++|.+. . ......+|+|++.....+++++.+++|+|||||.+|.
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV 138 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence 45578999999999999999999632 1 1123347999999999999988999999999999999
Q ss_pred HHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchh--HHHHHHHhhhccccccc-CCCC
Q psy1758 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINL--DRIKQDLISEQVIPEEY-GGAS 206 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~-~~~~ 206 (1527)
..+..++..+|++++|+|++++..+|+.+++..+...++| +|+++||+|+.+.+. +....++..... ...+ ...+
T Consensus 139 ~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~-~~~~~~~~v 217 (447)
T PLN03127 139 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLS-FYKFPGDEI 217 (447)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH-HhCCCCCcc
Confidence 9999999999999999999999999999999999999999 578999999975221 111112211111 1112 2357
Q ss_pred cEEEeecc---CCCC-------hhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEE
Q psy1758 207 PFISISAK---TGVG-------INKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVV 276 (1527)
Q Consensus 207 ~v~~iSAk---tg~g-------I~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv 276 (1527)
|++++||. +|.| +.+|++.+.... .......+.|++..|.+++..++.|+|++++|.+|++++||.|.
T Consensus 218 piip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l--p~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~ 295 (447)
T PLN03127 218 PIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI--PEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVE 295 (447)
T ss_pred eEEEeccceeecCCCcccccchHHHHHHHHHHhC--CCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEE
Confidence 99999886 4555 667777775331 12333456789999999999999999999999999999999996
Q ss_pred ec------ceeeeEeEeeccCCceeeecCCCcceEe--cCCCCCC-CCCCeEEEe
Q psy1758 277 AG------ASYGRIRSMLNENGKNILEAGPSIPVEI--QGLTKVP-FSGEELFVI 322 (1527)
Q Consensus 277 ~g------~~~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~~-~~G~~~~~~ 322 (1527)
+. ....+|++|..+ ++.+.+|.+|+.+.+ .|++... .+|+++...
T Consensus 296 i~p~~~~g~~~~~VksI~~~-~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~ 349 (447)
T PLN03127 296 IVGLRPGGPLKTTVTGVEMF-KKILDQGQAGDNVGLLLRGLKREDVQRGQVICKP 349 (447)
T ss_pred EcccCCCCcEEEEEEEEEEE-CcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecC
Confidence 53 245799999765 457889999987766 5554322 689887643
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-25 Score=269.57 Aligned_cols=251 Identities=27% Similarity=0.314 Sum_probs=192.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc----------------cccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN----------------VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~----------------~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~ 130 (1527)
....+|+++||+|||||||+++|.... .......|+|++.....+.+++.+++|||||||++|.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 345689999999999999999998521 1224447999999998898999999999999999999
Q ss_pred HHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcch--hHHHHHHHhhhccccccc-CCCC
Q psy1758 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDIN--LDRIKQDLISEQVIPEEY-GGAS 206 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~--~~~~~~~l~~~~~~~~~~-~~~~ 206 (1527)
..+..++..+|++++|+|+.+|..+|+.+++..+...++| +|+++||+|+.+.+ .+....++.... ....| ...+
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l-~~~g~~~~~~ 237 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELL-SSYEFPGDDI 237 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHH-HhcCCCcCcc
Confidence 9999999999999999999999999999999999999999 78899999997522 111111222111 11111 1357
Q ss_pred cEEEeeccCCCCh------------------hHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccE
Q psy1758 207 PFISISAKTGVGI------------------NKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGT 268 (1527)
Q Consensus 207 ~v~~iSAktg~gI------------------~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~ 268 (1527)
|++++||.+|.++ ..|++.|... ...+..+.+.|++..|.+++..++.|+|++++|.+|+
T Consensus 238 ~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~--~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~ 315 (478)
T PLN03126 238 PIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSY--IPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGT 315 (478)
T ss_pred eEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHh--CCCCCCccccceeeEEEEEEEeCCceEEEEEEEEcCe
Confidence 9999999998543 3344444321 1112233567899999999999999999999999999
Q ss_pred EEeccEEEecce----eeeEeEeeccCCceeeecCCCcceEe--cCCCCCC-CCCCeEEE
Q psy1758 269 LRCSDIVVAGAS----YGRIRSMLNENGKNILEAGPSIPVEI--QGLTKVP-FSGEELFV 321 (1527)
Q Consensus 269 l~~gd~vv~g~~----~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~~-~~G~~~~~ 321 (1527)
|++||.|.+++. ..+|++|+.+ +.++.+|.||+.+.+ .|++... .+|+++..
T Consensus 316 i~~Gd~v~i~p~~~~~~~~VksI~~~-~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~ 374 (478)
T PLN03126 316 VKVGETVDIVGLRETRSTTVTGVEMF-QKILDEALAGDNVGLLLRGIQKADIQRGMVLAK 374 (478)
T ss_pred EecCCEEEEecCCCceEEEEEEEEEC-CeECCEEeCCceeeeeccCCcHHHcCCccEEec
Confidence 999999998653 4789999765 568899999988777 4554322 68887764
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-25 Score=268.35 Aligned_cols=250 Identities=29% Similarity=0.332 Sum_probs=190.8
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc----------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV----------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~----------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~ 131 (1527)
...+|+++||+|||||||+++|++... .....+|+|++.....+.+++.+++|+|||||.+|..
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~ 90 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVK 90 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHH
Confidence 446899999999999999999986421 2233479999998888888888999999999999999
Q ss_pred HHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchh--HHHHHHHhhhccccccc-CCCCc
Q psy1758 132 MRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINL--DRIKQDLISEQVIPEEY-GGASP 207 (1527)
Q Consensus 132 ~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~-~~~~~ 207 (1527)
.+.+++..+|++++|+|+.+++.+|+.+++..+...++| +|+|+||+|+.+.+. +....++..... ...+ ...+|
T Consensus 91 ~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~ 169 (409)
T CHL00071 91 NMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLS-KYDFPGDDIP 169 (409)
T ss_pred HHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHH-HhCCCCCcce
Confidence 999999999999999999999999999999999999999 778999999975321 111112221111 1111 12479
Q ss_pred EEEeeccCCCCh------------------hHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEE
Q psy1758 208 FISISAKTGVGI------------------NKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTL 269 (1527)
Q Consensus 208 v~~iSAktg~gI------------------~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l 269 (1527)
++++||.+|.|+ ..|++.|... ......+.+.|++..|.+++..++.|+|++++|.+|++
T Consensus 170 ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~--~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l 247 (409)
T CHL00071 170 IVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSY--IPTPERDTDKPFLMAIEDVFSITGRGTVATGRIERGTV 247 (409)
T ss_pred EEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhh--CCCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCEE
Confidence 999999999743 4455554322 11122345678999999999999999999999999999
Q ss_pred EeccEEEe-c---ceeeeEeEeeccCCceeeecCCCcceEec--CCCCC-CCCCCeEEE
Q psy1758 270 RCSDIVVA-G---ASYGRIRSMLNENGKNILEAGPSIPVEIQ--GLTKV-PFSGEELFV 321 (1527)
Q Consensus 270 ~~gd~vv~-g---~~~~kVr~i~~~~g~~v~~a~~~~~v~I~--gl~~~-~~~G~~~~~ 321 (1527)
++||.|.+ + ....+|++|+.+ ++++.+|.||+.+.+. |++.. -.+|+++..
T Consensus 248 ~~Gd~v~i~p~~~~~~~~VksI~~~-~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~ 305 (409)
T CHL00071 248 KVGDTVEIVGLRETKTTTVTGLEMF-QKTLDEGLAGDNVGILLRGIQKEDIERGMVLAK 305 (409)
T ss_pred eeCCEEEEeeCCCCcEEEEEEEEEc-CcCCCEECCCceeEEEEcCCCHHHcCCeEEEec
Confidence 99999975 2 235799999765 4578999999888554 55432 268887753
|
|
| >COG0858 RbfA Ribosome-binding factor A [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-26 Score=226.46 Aligned_cols=111 Identities=37% Similarity=0.645 Sum_probs=105.5
Q ss_pred ccchhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecC-ChhhHHHHHHHHHHhhHHHHHHHhcccc
Q psy1758 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFN-KDISIKNILDNLSKAKNYIRFKLSKKLH 619 (1527)
Q Consensus 541 r~~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~-~~~~~~~~~~~l~~~~g~ir~~l~~~l~ 619 (1527)
|..|..++++++|+++++++++||++++++||+|+||+||+||+||||++| .+.+.++++++|++|+||||+.|+++++
T Consensus 6 R~~rv~e~i~~~l~~il~~eikDprl~~~~Vt~V~vS~Dl~~A~Vyvt~l~~~~~~~~~~~~~L~~A~g~ir~~l~~~~~ 85 (118)
T COG0858 6 RAKRVAEQIQKELAEILQREIKDPRLGLVTVTDVEVSKDLSHAKVYVTVLGDEESSKAEILAALNKAKGFIRSELGKRLR 85 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCcCceEEEEEEEcCCCceEEEEEEecCCchhhHHHHHHHHHHhHHHHHHHHHHhCC
Confidence 778999999999999999999999999999999999999999999999999 5557889999999999999999999999
Q ss_pred cccCCeEEEEeccchhhHHHHHHHHhhccccc
Q psy1758 620 IHTLPILNFFYDNSIENAMMISKLIDGIKYCM 651 (1527)
Q Consensus 620 lr~~P~l~F~~D~s~~~~~~i~~ll~~i~~~~ 651 (1527)
||++|+|+|+||+|++++.+|++||++++...
T Consensus 86 lr~~PeL~F~~D~s~~~~~ki~~Ll~~l~~~~ 117 (118)
T COG0858 86 LRKTPELHFVYDDSIENGNKIDALLNDLKKAD 117 (118)
T ss_pred eEeCCeEEEEeCcccchHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999987653
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-25 Score=270.96 Aligned_cols=247 Identities=30% Similarity=0.421 Sum_probs=189.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-------------------------------ccccCCceeEEEEEEEEEeCCe
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-------------------------------VFSEAGGITQHIGAYNVVTNHG 116 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-------------------------------~~~~~~giT~~~~~~~~~~~~~ 116 (1527)
...+|+++||+|||||||+++|..... ......|+|++.....+.+++.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 446899999999999999999975211 1122459999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC---CcHHHHHHHHHHHHcCC-CEEEEEEcccCCcchhHHH---H
Q psy1758 117 SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG---VMPQTREAIAHAKISGV-PLIVAINKIDKLDINLDRI---K 189 (1527)
Q Consensus 117 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g---~~~qt~e~i~~~~~~~v-piIvviNKiDl~~~~~~~~---~ 189 (1527)
.++|||||||++|...+..+++.+|++++|+|++++ ...++.+++..+...+. |+|+|+||+|+.+.+.+.. .
T Consensus 86 ~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~ 165 (426)
T TIGR00483 86 EVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIK 165 (426)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHH
Confidence 999999999999999999999999999999999998 77888888777776665 5889999999975433222 2
Q ss_pred HHHhhhcccccccC---CCCcEEEeeccCCCChhH------------HHHHHHHHHHHHhhcCCCCCCCceEEEEEeecC
Q psy1758 190 QDLISEQVIPEEYG---GASPFISISAKTGVGINK------------LLENISLQAEILELKAPVTTPAKGVIIESRLDK 254 (1527)
Q Consensus 190 ~~l~~~~~~~~~~~---~~~~v~~iSAktg~gI~e------------L~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~ 254 (1527)
.++... ...++ ..++++++||++|.|+++ |++.|.. ......+.+.|++..|.+++..+
T Consensus 166 ~ei~~~---~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~---~~~~~~~~~~p~r~~i~~v~~~~ 239 (426)
T TIGR00483 166 KEVSNL---IKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA---LEPPEKPTDKPLRIPIQDVYSIT 239 (426)
T ss_pred HHHHHH---HHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhc---CCCCCCccCCCcEEEEEEEEecC
Confidence 222111 11111 246899999999999987 4444421 22222334678999999999999
Q ss_pred CCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEe--cCCCCCC-CCCCeEEE
Q psy1758 255 GKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEI--QGLTKVP-FSGEELFV 321 (1527)
Q Consensus 255 ~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~~-~~G~~~~~ 321 (1527)
+.|+|++++|.+|+|++||.|++++ ...+|++|+.+ +..+.+|.||+.+.+ .+++... .+|+++..
T Consensus 240 g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~-~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~ 310 (426)
T TIGR00483 240 GVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMH-HEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGH 310 (426)
T ss_pred CCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEEC-CcccCEEcCCCEEEEEECCCChhhcccceEEec
Confidence 9999999999999999999999865 45799999755 467899999998877 4443222 57887653
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-25 Score=268.87 Aligned_cols=249 Identities=27% Similarity=0.349 Sum_probs=190.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc---ccccCCceeEEEEEEEEE---------------eC---------------
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV---VFSEAGGITQHIGAYNVV---------------TN--------------- 114 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~---~~~~~~giT~~~~~~~~~---------------~~--------------- 114 (1527)
...+|+++||++||||||+.+|++... ......|+|++++..... +.
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 446899999999999999999997543 455567999888776441 11
Q ss_pred ---CeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC-CcHHHHHHHHHHHHcCCC-EEEEEEcccCCcch-hHHH
Q psy1758 115 ---HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG-VMPQTREAIAHAKISGVP-LIVAINKIDKLDIN-LDRI 188 (1527)
Q Consensus 115 ---~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g-~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~-~~~~ 188 (1527)
...++|+|||||++|...+..++..+|++++|+|++++ +++||.+++..+...+++ +|+|+||+|+.+.+ ..+.
T Consensus 113 ~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~ 192 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQ 192 (460)
T ss_pred ccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHH
Confidence 13689999999999999999999999999999999996 799999999988888886 88999999997532 2222
Q ss_pred HHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecC--------CCceEE
Q psy1758 189 KQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDK--------GKGPVA 260 (1527)
Q Consensus 189 ~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~--------~~G~v~ 260 (1527)
..++.... ...+...++++++||++|.|++.|++.|... ......+.+.|++..|.+++..+ +.|+|+
T Consensus 193 ~~ei~~~l--~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~--lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv 268 (460)
T PTZ00327 193 YEEIRNFV--KGTIADNAPIIPISAQLKYNIDVVLEYICTQ--IPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVA 268 (460)
T ss_pred HHHHHHHH--HhhccCCCeEEEeeCCCCCCHHHHHHHHHhh--CCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEEE
Confidence 22222211 1112345799999999999999999999742 22223345678888888887554 379999
Q ss_pred EEEeeccEEEeccEEEecce---------------eeeEeEeeccCCceeeecCCCcceEec-----CCCCCC-CCCCeE
Q psy1758 261 TVLIQSGTLRCSDIVVAGAS---------------YGRIRSMLNENGKNILEAGPSIPVEIQ-----GLTKVP-FSGEEL 319 (1527)
Q Consensus 261 ~~~v~~G~l~~gd~vv~g~~---------------~~kVr~i~~~~g~~v~~a~~~~~v~I~-----gl~~~~-~~G~~~ 319 (1527)
+++|.+|++++||.|.+++. ..+|++|+. +++++.+|.||+.+.|. ++.+-. .+|+++
T Consensus 269 ~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~-~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl 347 (460)
T PTZ00327 269 GGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFA-ENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVL 347 (460)
T ss_pred EEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEE-CCeECCEEcCCCEEEEEeccCCCcchhhcccccEE
Confidence 99999999999999998763 369999975 56789999999988885 222211 478876
Q ss_pred EE
Q psy1758 320 FV 321 (1527)
Q Consensus 320 ~~ 321 (1527)
..
T Consensus 348 ~~ 349 (460)
T PTZ00327 348 GY 349 (460)
T ss_pred Ec
Confidence 64
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=274.84 Aligned_cols=296 Identities=25% Similarity=0.286 Sum_probs=217.9
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccc---------------cccCCceeEEEEEEEEEeC-----CeEEEEEeCCChhh
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVV---------------FSEAGGITQHIGAYNVVTN-----HGSITFLDTPGHEA 128 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~---------------~~~~~giT~~~~~~~~~~~-----~~~i~~iDTPG~e~ 128 (1527)
-.+|+|+||+|||||||+++|...... .....|+|+......+.|. +..++|||||||++
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 357999999999999999999763211 1234588887777666664 46899999999999
Q ss_pred HHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcE
Q psy1758 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPF 208 (1527)
Q Consensus 129 f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v 208 (1527)
|...+.++++.+|++|+|+|+++++..++.+.|..+...++|+++|+||+|+..++......++...... ...++
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~-----~~~~v 161 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGI-----DASDA 161 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCC-----CcceE
Confidence 9999999999999999999999999999999998888889999999999999765554443333322110 11258
Q ss_pred EEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecce--eeeEeE
Q psy1758 209 ISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRS 286 (1527)
Q Consensus 209 ~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~ 286 (1527)
+++||++|.|+++|+++|.... ..+..+.+.|+.++|++++.+++.|.+++++|.+|+|+.||.|.+.++ ..+|.+
T Consensus 162 i~iSAktG~GI~~Ll~~I~~~l--p~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~ 239 (600)
T PRK05433 162 VLVSAKTGIGIEEVLEAIVERI--PPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDE 239 (600)
T ss_pred EEEecCCCCCHHHHHHHHHHhC--ccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCCceEEEEE
Confidence 9999999999999999997542 333345678899999999999999999999999999999999987543 356777
Q ss_pred eecc--CCceeeecCCCcceEec-CCCCCC--CCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhcc
Q psy1758 287 MLNE--NGKNILEAGPSIPVEIQ-GLTKVP--FSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINK 361 (1527)
Q Consensus 287 i~~~--~g~~v~~a~~~~~v~I~-gl~~~~--~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1527)
+... +..++.++.+|+.+.+. |++++. ..||++....+.. .. .+.. + +
T Consensus 240 i~~~~~~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~--~~--------------------~l~~----~-~ 292 (600)
T PRK05433 240 VGVFTPKMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPA--EE--------------------PLPG----F-K 292 (600)
T ss_pred eeccCCCceECcEEcCCCEEEEecccccccccCCCCEEECCCCcc--cc--------------------CCCC----C-C
Confidence 7543 44678899999987774 665432 6899886443210 00 0000 0 0
Q ss_pred ccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeE
Q psy1758 362 EKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQV 398 (1527)
Q Consensus 362 ~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~i 398 (1527)
...+.+..-+.+...+..+.|.++|.++..+...+.+
T Consensus 293 ~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~ 329 (600)
T PRK05433 293 EVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTY 329 (600)
T ss_pred CCCcEEEEEEEECCccCHHHHHHHHHHHHHhCCeEEE
Confidence 1123344456666677777788888777655555554
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-25 Score=278.94 Aligned_cols=272 Identities=22% Similarity=0.235 Sum_probs=185.1
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCccccccccc----ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN----ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD 997 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~----~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d 997 (1527)
.+.|+|+||+|||||||+++|.+........+... ....+....+...|.+.......+.+. .++|||||||.+
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~iDTPG~e~ 83 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIP--GLLFIDTPGHEA 83 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccC--CEEEEECCChHH
Confidence 35799999999999999999975532222211111 111111112222222221101111122 279999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCC-CCCh--------------hhhH----
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS-NARP--------------EWVV---- 1058 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~-~a~~--------------~~v~---- 1058 (1527)
|...+.++++.+|+++||+|+++|+++||..++..+...++|+++|+||+|+. .+.. ..+.
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~ 163 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELE 163 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999985 2210 1111
Q ss_pred ---HHHHHHHhhhcccc--------cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHh----hcCCC-CCCCCCCc
Q psy1758 1059 ---DATFDLFDKLCATE--------EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK----YVPVH-KDNSNNPL 1122 (1527)
Q Consensus 1059 ---~~~~~~~~~l~~~~--------~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~----~lp~p-~~~~~~p~ 1122 (1527)
.++...+...+-.. ...++|++++||++|. |+++|++.+.. +++.+ ..+.+.|+
T Consensus 164 ~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGe----------Gi~dLl~~i~~~~~~~l~~~l~~~~~~~~ 233 (586)
T PRK04004 164 EKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGE----------GIPDLLMVLAGLAQRYLEERLKIDVEGPG 233 (586)
T ss_pred HHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCC----------ChHHHHHHHHHHHHHHHHHhhccCCCCCe
Confidence 11212222222111 1235789999999998 99999888764 34433 34567899
Q ss_pred eeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeec--------CceeEeeeeecCCEEEE
Q psy1758 1123 QLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKG--------LDRVLVNEALSGDIVLI 1194 (1527)
Q Consensus 1123 ~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g--------~~~~~v~~a~AGdIvai 1194 (1527)
++.|+++..+++.|.+++|+|.+|+|++||.|.+.+. .| ....+|..|....+ .....+++|.|..-|-+
T Consensus 234 ~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~-~~-~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i 311 (586)
T PRK04004 234 KGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGK-DG-PIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKI 311 (586)
T ss_pred EEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcC-CC-cceEEEEEEecCcchhhccccccccccccccCCCCceEE
Confidence 9999999999999999999999999999999988766 22 23468888876631 12345566666554444
Q ss_pred --ecceecccCCeee
Q psy1758 1195 --TGIEEICIGSTIC 1207 (1527)
Q Consensus 1195 --~gl~~~~iGdTi~ 1207 (1527)
.|++++..||.+.
T Consensus 312 ~~~gl~~~~~g~~~~ 326 (586)
T PRK04004 312 SAPDLEDALAGSPLR 326 (586)
T ss_pred EeCCccccCCCCeEE
Confidence 3777666676653
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=263.52 Aligned_cols=251 Identities=27% Similarity=0.312 Sum_probs=193.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc----------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV----------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~----------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~ 130 (1527)
....+|+++||+|||||||+++|++... .....+|+|++.....+.+++.+++|+|||||.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 3456899999999999999999976211 122357999999988888888899999999999999
Q ss_pred HHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEEcccCCcchh--HHHHHHHhhhccccccc-CCCC
Q psy1758 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLI-VAINKIDKLDINL--DRIKQDLISEQVIPEEY-GGAS 206 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiI-vviNKiDl~~~~~--~~~~~~l~~~~~~~~~~-~~~~ 206 (1527)
..+..++..+|++++|+|+.++..+|+.+++..+...++|.+ +++||+|+.+... +....++..... ...+ ...+
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~ 168 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS-KYDFPGDDT 168 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH-hcCCCccCC
Confidence 999999999999999999999999999999999999999975 6899999975211 111122221111 1111 2357
Q ss_pred cEEEeeccCCC----------ChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEE
Q psy1758 207 PFISISAKTGV----------GINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVV 276 (1527)
Q Consensus 207 ~v~~iSAktg~----------gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv 276 (1527)
|++++||++|. |+..|++.|.... .......+.|++..|.+++..++.|+|++++|.+|++++||.++
T Consensus 169 ~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~--~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~ 246 (396)
T PRK00049 169 PIIRGSALKALEGDDDEEWEKKILELMDAVDSYI--PTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVE 246 (396)
T ss_pred cEEEeecccccCCCCcccccccHHHHHHHHHhcC--CCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEEE
Confidence 99999999975 4667777775321 12233456799999999999999999999999999999999997
Q ss_pred ecc----eeeeEeEeeccCCceeeecCCCcceEe--cCCCCCC-CCCCeEEE
Q psy1758 277 AGA----SYGRIRSMLNENGKNILEAGPSIPVEI--QGLTKVP-FSGEELFV 321 (1527)
Q Consensus 277 ~g~----~~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~~-~~G~~~~~ 321 (1527)
+.+ ...+|++|..+ ++.+.+|.+|+.+.+ .|++... .+|+++..
T Consensus 247 i~p~~~~~~~~VksI~~~-~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~ 297 (396)
T PRK00049 247 IVGIRDTQKTTVTGVEMF-RKLLDEGQAGDNVGALLRGIKREDVERGQVLAK 297 (396)
T ss_pred EeecCCCceEEEEEEEEC-CcEeCEEcCCCEEEEEeCCCCHHHCCcceEEec
Confidence 743 45789999754 568999999998777 5553322 57887764
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=265.33 Aligned_cols=146 Identities=25% Similarity=0.403 Sum_probs=120.2
Q ss_pred EEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCCh--------hhHHHHHHhhccccC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGH--------EAFTAMRARGAKVTD 141 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~--------e~f~~~~~~~~~~aD 141 (1527)
+|+++|++|||||||+|+|.+... ..+..+|+|++.....+.+++..+.+|||||+ +.+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 489999999999999999998774 56778899999999999999999999999995 566677778889999
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 142 IVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 142 ~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
++++|+|+.++......+.+..++..+.|+++|+||+|+...... ..+.. .+ +..+++++||++|.|+++
T Consensus 81 ~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~--~~~~~-------~l-g~~~~~~vSa~~g~gv~~ 150 (429)
T TIGR03594 81 VILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV--AAEFY-------SL-GFGEPIPISAEHGRGIGD 150 (429)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc--HHHHH-------hc-CCCCeEEEeCCcCCChHH
Confidence 999999999999998888888888889999999999998653211 11111 11 223688899999999888
Q ss_pred HHHHH
Q psy1758 222 LLENI 226 (1527)
Q Consensus 222 L~~~l 226 (1527)
+++.+
T Consensus 151 ll~~i 155 (429)
T TIGR03594 151 LLDAI 155 (429)
T ss_pred HHHHH
Confidence 87755
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=250.01 Aligned_cols=253 Identities=27% Similarity=0.361 Sum_probs=200.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-------------------------------ccccCCceeEEEEEEEEEeCCe
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-------------------------------VFSEAGGITQHIGAYNVVTNHG 116 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-------------------------------~~~~~~giT~~~~~~~~~~~~~ 116 (1527)
...+++++||++||||||+.+|..... ......|+|.+.....++.+..
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 346899999999999999998854321 1123359999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC-------CcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHHH
Q psy1758 117 SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG-------VMPQTREAIAHAKISGVP-LIVAINKIDKLDINLDRI 188 (1527)
Q Consensus 117 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g-------~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~~ 188 (1527)
.++++|||||.+|.+.+..++++||++|||+|+.++ ...||++++..++..++. +||++||||+.+++.++.
T Consensus 86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf 165 (428)
T COG5256 86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERF 165 (428)
T ss_pred eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHH
Confidence 999999999999999999999999999999999997 889999999999999997 999999999998876665
Q ss_pred HHHHhhhccccc--ccC-CCCcEEEeeccCCCChhHHH------------HHHHHHHHHHhhcCCCCCCCceEEEEEeec
Q psy1758 189 KQDLISEQVIPE--EYG-GASPFISISAKTGVGINKLL------------ENISLQAEILELKAPVTTPAKGVIIESRLD 253 (1527)
Q Consensus 189 ~~~l~~~~~~~~--~~~-~~~~v~~iSAktg~gI~eL~------------~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~ 253 (1527)
.+-..+.....+ .|. ..++|+|+||.+|+|+.+-- ++|- .......+.+.|++..|.+++..
T Consensus 166 ~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd---~~~~p~~~~d~Plr~pI~~v~~i 242 (428)
T COG5256 166 EEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD---QLEPPERPLDKPLRLPIQDVYSI 242 (428)
T ss_pred HHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccCChHHHHHh---ccCCCCCCCCCCeEeEeeeEEEe
Confidence 443222211222 222 24789999999999987533 3332 22333445788999999999999
Q ss_pred CCCceEEEEEeeccEEEeccEEEecce--eeeEeEeeccCCceeeecCCCcce--EecCCCCCC-CCCCeEEEeCC
Q psy1758 254 KGKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRSMLNENGKNILEAGPSIPV--EIQGLTKVP-FSGEELFVILN 324 (1527)
Q Consensus 254 ~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~i~~~~g~~v~~a~~~~~v--~I~gl~~~~-~~G~~~~~~~~ 324 (1527)
.+.|++..++|.+|.|++||.|++.+. .+.|+++..+ .+++..+.||+-+ .|.|+.+-+ .+||++--..+
T Consensus 243 ~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~-~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n 317 (428)
T COG5256 243 SGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMH-HEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSDN 317 (428)
T ss_pred cCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeec-ccccccCCCCCeEEEEecCCchhccCCccEeccCCC
Confidence 999999999999999999999998665 5799999776 5678888888765 556665533 78997664443
|
|
| >PRK13817 ribosome-binding factor A; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-25 Score=224.39 Aligned_cols=109 Identities=29% Similarity=0.504 Sum_probs=103.4
Q ss_pred ccchhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecCChhhHHHHHHHHHHhhHHHHHHHhccccc
Q psy1758 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLSKKLHI 620 (1527)
Q Consensus 541 r~~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~~~~~~~~~~~~l~~~~g~ir~~l~~~l~l 620 (1527)
|..|+++.++++|+++++++++||++++||||+|+||+||++|+||||+++++ +.++++++|++|+||||+.||++++|
T Consensus 4 R~~Rv~~~I~reis~il~~ei~dp~l~~vtVt~V~vS~Dl~~AkVyvs~~~~~-~~~~~~~~L~~a~g~iR~~l~~~l~l 82 (119)
T PRK13817 4 RQQRVADLIHQQLAELLKKEVRDSRLSKISLTAVSISPDLKQAKVFYSLLENQ-NEKEVQKALNKATGYLRHLLAQATVL 82 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCceEEeEEEECCCCCEEEEEEEECCCc-cHHHHHHHHHHhHHHHHHHHHHhCCC
Confidence 67789999999999999999999999999999999999999999999999764 45788999999999999999999999
Q ss_pred ccCCeEEEEeccchhhHHHHHHHHhhcccc
Q psy1758 621 HTLPILNFFYDNSIENAMMISKLIDGIKYC 650 (1527)
Q Consensus 621 r~~P~l~F~~D~s~~~~~~i~~ll~~i~~~ 650 (1527)
|++|+|+|+||+|+|++.+|++||+++..+
T Consensus 83 R~~PeL~F~~D~s~e~~~~I~~Ll~~l~~~ 112 (119)
T PRK13817 83 RYVPKLEFVYDESIERAHRISLLIERALKK 112 (119)
T ss_pred eECCEEEEEEcCchHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999755
|
|
| >PRK13816 ribosome-binding factor A; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-25 Score=225.61 Aligned_cols=112 Identities=29% Similarity=0.578 Sum_probs=104.0
Q ss_pred ccchhhhhhhhhhHHhhhhhccCcce-eeeEEEEEEEeCCcceEEEEEEecCCh-------hhHHHHHHHHHHhhHHHHH
Q psy1758 541 RLSRIENQIQRDISEIIAFDIQNPII-NIITITEVKITLDYSYAKIFFTTFNKD-------ISIKNILDNLSKAKNYIRF 612 (1527)
Q Consensus 541 r~~r~~~~i~~~Iseii~~ei~d~~~-~~vtvt~V~~s~Dl~~a~vy~s~~~~~-------~~~~~~~~~l~~~~g~ir~ 612 (1527)
|..|+++.|+++|+++++++++||++ .+||||+|+||+||++|+||||+||++ .++++++++|++++||||+
T Consensus 4 R~~Rv~~~Irreis~il~~ei~dprl~~~vtVT~V~vS~DL~~AkVyvs~lg~~~~~~~~~~~~~~~l~~L~~a~g~iR~ 83 (131)
T PRK13816 4 RLKRMADSVQRELSELIRQELKDPRLGGLVTISSVKVSPDLGYADVYVTVMGRELSDDQNEVAHRETLDVLNKASGFLRT 83 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccCCceEEeEEEECCCCCeEEEEEEecCCccccccchhHHHHHHHHHHHHHHHHHH
Confidence 66789999999999999999999999 589999999999999999999999853 3467899999999999999
Q ss_pred HHhcccccccCCeEEEEeccchhhHHHHHHHHhhcccccc
Q psy1758 613 KLSKKLHIHTLPILNFFYDNSIENAMMISKLIDGIKYCMQ 652 (1527)
Q Consensus 613 ~l~~~l~lr~~P~l~F~~D~s~~~~~~i~~ll~~i~~~~~ 652 (1527)
.||++|+||++|+|+|++|+|++++.+|++||+++..+.+
T Consensus 84 ~L~krl~lR~~PeL~F~~D~s~e~~~~I~~Ll~~i~~~~~ 123 (131)
T PRK13816 84 ELSRRIKTRITPRLRFHYDKTNAYGNYMFGLIEKAVQDLP 123 (131)
T ss_pred HHHhhcCCeECCEEEEEECCChhHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999975533
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-24 Score=259.60 Aligned_cols=249 Identities=27% Similarity=0.345 Sum_probs=186.0
Q ss_pred CCEEEEEecCCCChhHHHHHHHcccc---ccccCCceeEEEEEEEEE--------------e------------CCeEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNV---VFSEAGGITQHIGAYNVV--------------T------------NHGSIT 119 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~---~~~~~~giT~~~~~~~~~--------------~------------~~~~i~ 119 (1527)
..+|+++||+|||||||+++|.+... ......|+|.+.....+. . .+..++
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 46799999999999999999976432 223345778777643322 1 135799
Q ss_pred EEeCCChhhHHHHHHhhccccCEEEEEEeCCCCC-cHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhH-HHHHHHhhhc
Q psy1758 120 FLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHAKISGVP-LIVAINKIDKLDINLD-RIKQDLISEQ 196 (1527)
Q Consensus 120 ~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~-~~~~~l~~~~ 196 (1527)
|||||||++|...+..++..+|++++|+|++++. ..|+.+++..+...+++ +++|+||+|+.+.+.. ....++...
T Consensus 84 liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~- 162 (406)
T TIGR03680 84 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEF- 162 (406)
T ss_pred EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhh-
Confidence 9999999999999999999999999999999988 89999999988888764 8999999999763321 111222111
Q ss_pred ccccccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCC--------CceEEEEEeeccE
Q psy1758 197 VIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKG--------KGPVATVLIQSGT 268 (1527)
Q Consensus 197 ~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~--------~G~v~~~~v~~G~ 268 (1527)
....+...++++++||++|.|+++|+++|.... .....+.+.|++..|.+++..++ +|+|++++|.+|+
T Consensus 163 -l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l--~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~ 239 (406)
T TIGR03680 163 -VKGTVAENAPIIPVSALHNANIDALLEAIEKFI--PTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGK 239 (406)
T ss_pred -hhhcccCCCeEEEEECCCCCChHHHHHHHHHhC--CCCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCE
Confidence 111122346899999999999999999997432 22334456789999999886544 6789999999999
Q ss_pred EEeccEEEecce--------------eeeEeEeeccCCceeeecCCCcceEec-----CCCCCC-CCCCeEEEe
Q psy1758 269 LRCSDIVVAGAS--------------YGRIRSMLNENGKNILEAGPSIPVEIQ-----GLTKVP-FSGEELFVI 322 (1527)
Q Consensus 269 l~~gd~vv~g~~--------------~~kVr~i~~~~g~~v~~a~~~~~v~I~-----gl~~~~-~~G~~~~~~ 322 (1527)
|++||.|.++|. ..+|++|+. ++.++.+|.||+.+.+. ++..-. .+|+++...
T Consensus 240 i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~-~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~ 312 (406)
T TIGR03680 240 LKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRA-GGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKP 312 (406)
T ss_pred EeCCCEEEEccCccccccccccccccceEEeEEEE-CCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcC
Confidence 999999999765 258999975 46789999999998874 222211 467766644
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >KOG0461|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-24 Score=240.47 Aligned_cols=246 Identities=25% Similarity=0.290 Sum_probs=200.8
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec---------CeEEEEEeCC
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---------GTRINIIDTP 993 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---------~~~iniiDTP 993 (1527)
.|++|+||+|+|||||..+|...+.+ ...|.++...|||+|.+.....+... ..++.+||+|
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~ST---------aAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCP 78 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGST---------AAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCP 78 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccc---------hhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCC
Confidence 69999999999999999999754221 23588899999999999887766542 3467999999
Q ss_pred CCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-----hhhhHHHHHHHHhhh
Q psy1758 994 GHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-----PEWVVDATFDLFDKL 1068 (1527)
Q Consensus 994 Gh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-----~~~v~~~~~~~~~~l 1068 (1527)
||+.....+..+....|..+||||+..|.++||.+++-....+-.+.+||+||+|....+ .++....++..++
T Consensus 79 GHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe-- 156 (522)
T KOG0461|consen 79 GHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLE-- 156 (522)
T ss_pred CcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999998888888899999999975332 2222222333332
Q ss_pred cccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCcc
Q psy1758 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRI 1148 (1527)
Q Consensus 1069 ~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~l 1148 (1527)
...-.-..|++.+||+.|+- ...++.+|.+.+.+.+-.|..|+++||.|.|..++.-.+.|.+..|.|.+|++
T Consensus 157 -~t~f~g~~PI~~vsa~~G~~------~~~~i~eL~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~ 229 (522)
T KOG0461|consen 157 -STGFDGNSPIVEVSAADGYF------KEEMIQELKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVL 229 (522)
T ss_pred -hcCcCCCCceeEEecCCCcc------chhHHHHHHHHHHHhhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeEE
Confidence 22222346999999999951 12388999999999999999999999999999999999999999999999999
Q ss_pred ccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE
Q psy1758 1149 KSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI 1194 (1527)
Q Consensus 1149 k~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai 1194 (1527)
+.|+.|.+..- + ...||+++.+|. .++.+|.+||..++
T Consensus 230 ~ln~~iE~PAL--~--e~rkVKslqmf~----~~vtsa~~GdR~g~ 267 (522)
T KOG0461|consen 230 RLNTEIEFPAL--N--EKRKVKSLQMFK----QRVTSAAAGDRAGF 267 (522)
T ss_pred ecCcEEeeccc--c--hhhhhhhHHHHh----hhhhhhhcccceee
Confidence 99999998655 2 345788887774 67999999999865
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-24 Score=245.47 Aligned_cols=229 Identities=29% Similarity=0.406 Sum_probs=194.2
Q ss_pred EEEEEecCCCChhHHHHHHHcccc---ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNV---VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~---~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.|+..||.+||||||+.++++... ......|+|+|++.+....+++.+.|+|+|||++|.+.+..++...|.++|||
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 578899999999999999987653 44556799999999999999999999999999999999999999999999999
Q ss_pred eCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHH
Q psy1758 148 AADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLEN 225 (1527)
Q Consensus 148 da~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~ 225 (1527)
|+++|+++||.|++..+...+++ .++|+||+|+.+.. .+....++..... ....++|.+|+++|+||++|.+.
T Consensus 82 ~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~-----l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 82 AADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLS-----LANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred eCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcc-----cccccccccccccCCCHHHHHHH
Confidence 99999999999999999999998 59999999998632 1122222222111 23458899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecce--eeeEeEeeccCCceeeecCCCcc
Q psy1758 226 ISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRSMLNENGKNILEAGPSIP 303 (1527)
Q Consensus 226 l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~i~~~~g~~v~~a~~~~~ 303 (1527)
|....+ +.....+.|++..|...+..+|.|+|+++.+.+|++++||.+++.+. ..+||+|+ .+++++++|.+|+.
T Consensus 157 l~~L~~--~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq-~~d~d~~~a~AG~R 233 (447)
T COG3276 157 LIDLLE--EIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINKEVRVRSIQ-AHDVDVEEAKAGQR 233 (447)
T ss_pred HHHhhh--hhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCCCeEEEEeee-ecCcchhhccccce
Confidence 987665 34456678999999999999999999999999999999999999754 57999995 45568888988888
Q ss_pred eEec
Q psy1758 304 VEIQ 307 (1527)
Q Consensus 304 v~I~ 307 (1527)
|.+.
T Consensus 234 VgLa 237 (447)
T COG3276 234 VGLA 237 (447)
T ss_pred eeee
Confidence 7664
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=256.31 Aligned_cols=248 Identities=23% Similarity=0.270 Sum_probs=181.6
Q ss_pred EEEEEecCCCChhHHHHHHHcccc---------------------------------ccccCCceeEEEEEEEEEeCCeE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNV---------------------------------VFSEAGGITQHIGAYNVVTNHGS 117 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~---------------------------------~~~~~~giT~~~~~~~~~~~~~~ 117 (1527)
+|+++||+|+|||||+++|..... ......|+|++.....+.+++.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 699999999999999999853221 11123588999999999999999
Q ss_pred EEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHHHHHHHhhhc
Q psy1758 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQ 196 (1527)
Q Consensus 118 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~~~~~l~~~~ 196 (1527)
++|||||||++|...+..++..+|++++|+|+.+|+.+|+.+++..+...++| +|+|+||+|+.+.+.+..........
T Consensus 82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~ 161 (406)
T TIGR02034 82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYL 161 (406)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888876 88999999997644322211111111
Q ss_pred ccccccC-CCCcEEEeeccCCCChhHH------------HHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEE
Q psy1758 197 VIPEEYG-GASPFISISAKTGVGINKL------------LENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVL 263 (1527)
Q Consensus 197 ~~~~~~~-~~~~v~~iSAktg~gI~eL------------~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~ 263 (1527)
.....++ ..++++++||++|.|++++ ++.|.. ........+.|++..|...+.....+.-.+++
T Consensus 162 ~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~---~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~ 238 (406)
T TIGR02034 162 AFAEQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILET---VEVERDAQDLPLRFPVQYVNRPNLDFRGYAGT 238 (406)
T ss_pred HHHHHcCCCCccEEEeecccCCCCcccccCCCccchhHHHHHHHh---cCCCCCcCCCCcccceEEEeecCCCcEEEEEE
Confidence 0111111 2468999999999999863 333321 11222234567887777665433322236789
Q ss_pred eeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEecCCCCC-CCCCCeEEEe
Q psy1758 264 IQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEIQGLTKV-PFSGEELFVI 322 (1527)
Q Consensus 264 v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~-~~~G~~~~~~ 322 (1527)
|.+|+|++||.|.+.| ...+|++|+.+ +.++.+|.||+.+.+..-... -.+|+++...
T Consensus 239 v~~G~l~~gd~v~i~P~~~~~~VksI~~~-~~~~~~a~~G~~v~l~l~~~~~i~rG~vl~~~ 299 (406)
T TIGR02034 239 IASGSVHVGDEVVVLPSGRSSRVARIVTF-DGDLEQARAGQAVTLTLDDEIDISRGDLLAAA 299 (406)
T ss_pred EecceeecCCEEEEeCCCcEEEEEEEEEC-CcccCEeCCCCEEEEEECCccccCCccEEEcC
Confidence 9999999999998855 45899999765 457999999999988743222 2678877643
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-23 Score=253.37 Aligned_cols=250 Identities=26% Similarity=0.336 Sum_probs=185.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccc---cccccCCceeEEEEEEEEEeC--------------------------CeEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTN---VVFSEAGGITQHIGAYNVVTN--------------------------HGSI 118 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~---~~~~~~~giT~~~~~~~~~~~--------------------------~~~i 118 (1527)
...+|+++||+|||||||+++|.+.. .......|+|.+.+...+.+. ...+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 45789999999999999999997642 123335688888765332221 2579
Q ss_pred EEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCC-cHHHHHHHHHHHHcCC-CEEEEEEcccCCcchhHH-HHHHHhhh
Q psy1758 119 TFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHAKISGV-PLIVAINKIDKLDINLDR-IKQDLISE 195 (1527)
Q Consensus 119 ~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-~~qt~e~i~~~~~~~v-piIvviNKiDl~~~~~~~-~~~~l~~~ 195 (1527)
+|||||||++|...+..++..+|++++|+|++++. ..++.+++..+...++ |+++|+||+|+.+.+... ....+...
T Consensus 88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~ 167 (411)
T PRK04000 88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEF 167 (411)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999987 7899999888877776 589999999997633211 11111111
Q ss_pred cccccccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecC--------CCceEEEEEeecc
Q psy1758 196 QVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDK--------GKGPVATVLIQSG 267 (1527)
Q Consensus 196 ~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~--------~~G~v~~~~v~~G 267 (1527)
....+....+++++||++|.|+++|++.|.... .....+.+.|++..|.+++..+ +.|+|++++|.+|
T Consensus 168 --l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l--~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G 243 (411)
T PRK04000 168 --VKGTVAENAPIIPVSALHKVNIDALIEAIEEEI--PTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQG 243 (411)
T ss_pred --hccccCCCCeEEEEECCCCcCHHHHHHHHHHhC--CCCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeC
Confidence 001112346899999999999999999996432 2233445778899999988543 4678999999999
Q ss_pred EEEeccEEEecce--------------eeeEeEeeccCCceeeecCCCcceEec-----CCCCC-CCCCCeEEEe
Q psy1758 268 TLRCSDIVVAGAS--------------YGRIRSMLNENGKNILEAGPSIPVEIQ-----GLTKV-PFSGEELFVI 322 (1527)
Q Consensus 268 ~l~~gd~vv~g~~--------------~~kVr~i~~~~g~~v~~a~~~~~v~I~-----gl~~~-~~~G~~~~~~ 322 (1527)
+|++||.|.+.+. ..+|++|... +..+.+|.||+.+.+. ++..- -.+|+++...
T Consensus 244 ~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~-~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~ 317 (411)
T PRK04000 244 VLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAG-GEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKP 317 (411)
T ss_pred EEecCCEEEEcCCcceecccccccccceEEEeEEEEC-CEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcC
Confidence 9999999998764 3589999654 5789999999998775 22111 1468876644
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-24 Score=243.57 Aligned_cols=186 Identities=31% Similarity=0.320 Sum_probs=147.4
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCccccccc--c-------------cceecchhhhhcccceeEeeeeEEEEecCeEEE
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQN--I-------------NARIMDSNEIEKERGITIFSKNCSIEYNGTRIN 988 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~--~-------------~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~in 988 (1527)
||+|+||+|||||||+++|++.+|.+.+.+. + ..+++|..+.|++||+|+++....+.|++++++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 7999999999999999999999998775431 1 124899999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHhcCEEEEEEeCCC-------CCChhHHHHHHHHHHcCC-ccEEEEeccCCCCC-----Chh
Q psy1758 989 IIDTPGHADFGGEVERILSMVDNVLLLIDAVE-------GPMPQTRFVTRKALKLGF-KPIVVVNKIDRSNA-----RPE 1055 (1527)
Q Consensus 989 iiDTPGh~df~~ev~~~l~~aD~ailVVDa~~-------G~~~qt~~~~~~~~~~gl-p~IvviNKiD~~~a-----~~~ 1055 (1527)
+||||||.+|..++.++++.+|++|+|||+++ ++..|+..++..+...++ |+|+|+||+|+..+ +++
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999998 567899999988888885 56779999999742 245
Q ss_pred hhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhc
Q psy1758 1056 WVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1056 ~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~l 1111 (1527)
++.+++...+..++.. ...+|++++||++|.+..+... .+.--..|+++|....
T Consensus 161 ~i~~~l~~~l~~~~~~--~~~~~ii~iSA~tg~gi~~~~~~~~w~~g~~l~~~l~~~~ 216 (219)
T cd01883 161 EIKKELSPFLKKVGYN--PKDVPFIPISGLTGDNLIEKSENMPWYKGPTLLEALDSLE 216 (219)
T ss_pred HHHHHHHHHHHHcCCC--cCCceEEEeecCcCCCCCcCCCCCCCccCCcHHHHHhCCC
Confidence 5566665555444321 1257899999999986443221 1111267888885443
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=257.79 Aligned_cols=302 Identities=21% Similarity=0.267 Sum_probs=223.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc----------------c------cccCCceeEEEEEEEEEeCCeEEEEEeCC
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV----------------V------FSEAGGITQHIGAYNVVTNHGSITFLDTP 124 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~----------------~------~~~~~giT~~~~~~~~~~~~~~i~~iDTP 124 (1527)
.+..+|+|+||+|+|||||+++|..... . .....|+|+......+.+++.++++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3557899999999999999999863111 0 11224777888888899999999999999
Q ss_pred ChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc------
Q psy1758 125 GHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI------ 198 (1527)
Q Consensus 125 G~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~------ 198 (1527)
||++|...+.++++.+|++|+|+|+++++..++...+..+...++|+++++||+|+..++..+...++......
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~~ 167 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAPIT 167 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCCeeEE
Confidence 99999999999999999999999999999999999999999999999999999999876654333322110000
Q ss_pred -------------------------------------c-------------c------------------------ccCC
Q psy1758 199 -------------------------------------P-------------E------------------------EYGG 204 (1527)
Q Consensus 199 -------------------------------------~-------------~------------------------~~~~ 204 (1527)
. + ..+.
T Consensus 168 ~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~~ 247 (526)
T PRK00741 168 WPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLAGE 247 (526)
T ss_pred eccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhcCC
Confidence 0 0 0012
Q ss_pred CCcEEEeeccCCCChhHHHHHHHHHHHHHhhc-------CCCCCCCceEEEEEe---ecCCCceEEEEEeeccEEEeccE
Q psy1758 205 ASPFISISAKTGVGINKLLENISLQAEILELK-------APVTTPAKGVIIESR---LDKGKGPVATVLIQSGTLRCSDI 274 (1527)
Q Consensus 205 ~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~-------~~~~~p~~~~v~~~~---~~~~~G~v~~~~v~~G~l~~gd~ 274 (1527)
.+|+++.||.++.||..|++.+......+... .+.+.++.++|++.. .++..|++++++|.+|+++.|+.
T Consensus 248 ~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvRV~sG~l~~g~~ 327 (526)
T PRK00741 248 LTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVRVCSGKFEKGMK 327 (526)
T ss_pred eEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEEEeccEECCCCE
Confidence 37899999999999999999998654211100 112346889999998 45689999999999999999999
Q ss_pred EEecce--eeeE---eEeeccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhh
Q psy1758 275 VVAGAS--YGRI---RSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKL 349 (1527)
Q Consensus 275 vv~g~~--~~kV---r~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~ 349 (1527)
|....+ ..|+ ..++..+...+.+|.||+.+.+.+++.. ..||.+..-. + + .+
T Consensus 328 v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~-~~GDTL~~~~--~----~-~~--------------- 384 (526)
T PRK00741 328 VRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTI-QIGDTFTQGE--K----L-KF--------------- 384 (526)
T ss_pred EEeccCCceEEecceEEEecCCceECceeCCCCEEEEECCCCC-ccCCCccCCC--c----c-cc---------------
Confidence 976433 2344 4455566677899999999999998876 7999886311 0 0 00
Q ss_pred hhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEe
Q psy1758 350 HKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIH 400 (1527)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~ 400 (1527)
+ .+ ..-...+..-|.+...+..+.+..+|.+|..+. .+++-.
T Consensus 385 ---~----~i-~~~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED-~l~~~~ 426 (526)
T PRK00741 385 ---T----GI-PNFAPELFRRVRLKNPLKQKQLQKGLVQLSEEG-AVQVFR 426 (526)
T ss_pred ---C----CC-CCCCccEEEEEEECCchhHHHHHHHHHHHhhcC-CeEEEE
Confidence 0 00 011244667788888888999999999887665 466644
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=261.36 Aligned_cols=256 Identities=24% Similarity=0.275 Sum_probs=179.7
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe------------------cC
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY------------------NG 984 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~------------------~~ 984 (1527)
+-|+|+||+|||||||+++|++........ .|+|.......+.+ +.
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~----------------ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~ 68 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREA----------------GGITQHIGATEIPMDVIEGICGDLLKKFKIRLKI 68 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccC----------------CceecccCeeEeeecccccccccccccccccccc
Confidence 479999999999999999998653222111 22332222222211 11
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCC-C----------
Q psy1758 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-R---------- 1053 (1527)
Q Consensus 985 ~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a-~---------- 1053 (1527)
..++|||||||.+|...+.++++.+|+++||+|+++|+++||.+++..+...++|.++|+||+|+... .
T Consensus 69 ~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~ 148 (590)
T TIGR00491 69 PGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMES 148 (590)
T ss_pred CcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHH
Confidence 24899999999999999999999999999999999999999999999999999999999999998631 0
Q ss_pred ----hhhhHHHHHHH-------Hhhhccc--------ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhh----
Q psy1758 1054 ----PEWVVDATFDL-------FDKLCAT--------EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY---- 1110 (1527)
Q Consensus 1054 ----~~~v~~~~~~~-------~~~l~~~--------~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~---- 1110 (1527)
.+.+...+.+. +.+.+.. +...++|++++||++|. |+++|++++...
T Consensus 149 sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGe----------GideLl~~l~~l~~~~ 218 (590)
T TIGR00491 149 FSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGE----------GIPELLTMLAGLAQQY 218 (590)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCC----------ChhHHHHHHHHHHHHH
Confidence 01111111111 1111111 11235799999999998 999999888642
Q ss_pred cC-CCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCc--------ee
Q psy1758 1111 VP-VHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLD--------RV 1181 (1527)
Q Consensus 1111 lp-~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~--------~~ 1181 (1527)
++ ....+.++|+++.|..+..+.+.|.++.|.|.+|+|++||.|.+.+. .| +...||..|+...+.+ ..
T Consensus 219 l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~-~~-~i~~kVr~l~~~~~l~e~r~~~~~~~ 296 (590)
T TIGR00491 219 LEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGS-DD-VIVTRVRALLKPRPLEEMRESRKKFQ 296 (590)
T ss_pred hhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccC-CC-cccEEEEEecCCCccccccccccccC
Confidence 32 22345678999999999999999999999999999999999999877 23 3456888887654321 22
Q ss_pred Eeeeeec--CCEEEEecceecccCCee
Q psy1758 1182 LVNEALS--GDIVLITGIEEICIGSTI 1206 (1527)
Q Consensus 1182 ~v~~a~A--GdIvai~gl~~~~iGdTi 1206 (1527)
.++++.| |--+.+.|++++..||.+
T Consensus 297 ~~~~~~~~~~~~v~~~~l~~~~aG~~~ 323 (590)
T TIGR00491 297 KVDEVVAAAGVKIAAPGLDDVMAGSPI 323 (590)
T ss_pred CcceecCCCceeEEecCCCCCCCCCEE
Confidence 3444333 333445566655555554
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >PRK00521 rbfA ribosome-binding factor A; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-24 Score=216.77 Aligned_cols=114 Identities=32% Similarity=0.554 Sum_probs=107.8
Q ss_pred cccccchhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecCChhhHHHHHHHHHHhhHHHHHHHhcc
Q psy1758 538 ECERLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLSKK 617 (1527)
Q Consensus 538 ecgr~~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~~~~~~~~~~~~l~~~~g~ir~~l~~~ 617 (1527)
+..|..|+++.++++|+++++++++||+++.||||+|++|+||++|+||||+++++.+.++++++|++++|+||+.||++
T Consensus 4 ~~~R~~Rv~~~i~~~is~il~~~i~d~~~~~vtIt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L~~~~~~iR~~la~~ 83 (120)
T PRK00521 4 ESQRALRVAEQIQRELAEILQREIKDPRLGMVTVTDVEVSPDLAHAKVYVTVLGDEEDKEEALAALKKAAGFLRSELGKR 83 (120)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEEEECCCCCEEEEEEEECCCchhHHHHHHHHHHhHHHHHHHHHhh
Confidence 34577899999999999999999999999999999999999999999999999877777899999999999999999999
Q ss_pred cccccCCeEEEEeccchhhHHHHHHHHhhccccc
Q psy1758 618 LHIHTLPILNFFYDNSIENAMMISKLIDGIKYCM 651 (1527)
Q Consensus 618 l~lr~~P~l~F~~D~s~~~~~~i~~ll~~i~~~~ 651 (1527)
++||++|+|+|++|+++|++.+|++||++++.+.
T Consensus 84 l~lr~~P~L~F~~D~s~e~~~~i~~lL~~i~~~~ 117 (120)
T PRK00521 84 LRLRYVPELRFVYDESLEYGNRIDELLRKAKKED 117 (120)
T ss_pred CCCccCCEEEEEECCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999997754
|
|
| >PF11987 IF-2: Translation-initiation factor 2; InterPro: IPR023115 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-25 Score=218.20 Aligned_cols=107 Identities=50% Similarity=0.797 Sum_probs=95.3
Q ss_pred hhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEeeccCcCChhhHHHHHhcCCEEEEeCCCCChh
Q psy1758 352 TENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADAS 431 (1527)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~~~vG~it~~Dv~~A~~~~a~Ii~Fnv~~~~~ 431 (1527)
++++++++.+.+.+.+++|||||++||+|||.++|.++++++++++|++++||+||++||.+|++++|+|+||||+++++
T Consensus 2 le~~~~~~~~~~~~~~~iIiKaD~~GslEAi~~~l~~~~~~~v~i~Ii~~~VG~it~sDI~~A~~~~a~Ii~FNv~~~~~ 81 (108)
T PF11987_consen 2 LEELFQEIEEEEIKELNIIIKADVQGSLEAIKNSLEKLSNDEVKIKIIHAGVGPITESDIELASASNAIIIAFNVKVSPD 81 (108)
T ss_dssp HSCCCCCHCC-CSSCCEEEEEESSHHHHHHHHHHHCCTT-SSSCEEESEEEESSBHHHHHHHHHHHC-EEEESSS-B-HH
T ss_pred HHHHHHHHhccCCceeeEEEEECchhhHHHHHHHHHhcccccccccEEEeeCCCCCHHHHHHHHhhCCEEEEeeCCCCHH
Confidence 34445555566788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEeehHHHHHHHHHH
Q psy1758 432 TRKLAQINNINIRYHNIIYNIIKEIKS 458 (1527)
Q Consensus 432 ~~~~a~~~~V~i~~~~iIY~l~~~~~~ 458 (1527)
+++.|++.||+|++|||||+|+||+++
T Consensus 82 ~~~~a~~~~V~I~~~~VIY~L~ddik~ 108 (108)
T PF11987_consen 82 AKDLAKKSGVKIRSHNVIYDLIDDIKK 108 (108)
T ss_dssp HHHCHHSSTSEEEESTTCCHHHHHHHH
T ss_pred HHHHHHHcCCEEEEeCHHHHHHHHhhC
Confidence 999999999999999999999999984
|
IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 kDa that contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this group undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation. The function of IF-2 in facilitating the proper binding of initiator methionyl-tRNA to the ribosomal P site appears to be universally conserved, with an IF-2 homologue (aIF-2) present in archaea bacteria [] Methanopyrus kandleri. This entry represents the domain 3 of IF-2. It consists of a alpha/beta/alpha structure with a core formed by a parallel beta-sheet of 4 strands [].; PDB: 1Z9B_A 1ZO1_I 3IZY_P 1G7R_A 1G7S_A 1G7T_A. |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-23 Score=255.04 Aligned_cols=254 Identities=21% Similarity=0.226 Sum_probs=184.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc---------------------------------cccCCceeEEEEEEEEEe
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV---------------------------------FSEAGGITQHIGAYNVVT 113 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~---------------------------------~~~~~giT~~~~~~~~~~ 113 (1527)
...++|+++||+|+|||||+++|...... .....|+|++.....+.+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 34578999999999999999998643210 111247899999888999
Q ss_pred CCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCC-CEEEEEEcccCCcchhHHH---H
Q psy1758 114 NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGV-PLIVAINKIDKLDINLDRI---K 189 (1527)
Q Consensus 114 ~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~v-piIvviNKiDl~~~~~~~~---~ 189 (1527)
++.+++|||||||++|...+..++..+|++++|+|+++|+.+|+.+++..+...++ |+|+|+||+|+.+.+.... .
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~ 184 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIR 184 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888876 5889999999975443222 1
Q ss_pred HHHhhhcccccccCCCCcEEEeeccCCCChhHHHHH--------HHHHHHHH-hhcCCCCCCCceEEEEEeecCCCceEE
Q psy1758 190 QDLISEQVIPEEYGGASPFISISAKTGVGINKLLEN--------ISLQAEIL-ELKAPVTTPAKGVIIESRLDKGKGPVA 260 (1527)
Q Consensus 190 ~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~--------l~~~~~~~-~~~~~~~~p~~~~v~~~~~~~~~G~v~ 260 (1527)
.++.... ....+....+++++||++|.|++++.+. |....+.. ....+.+.|++..|..++.......-.
T Consensus 185 ~~l~~~~-~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~~~~~~~g~ 263 (474)
T PRK05124 185 EDYLTFA-EQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLETVDIQRVVDAQPFRFPVQYVNRPNLDFRGY 263 (474)
T ss_pred HHHHHHH-HhcCCCCCceEEEEEeecCCCcccccccccccchhhHHHHHhhcCCCCCCCCCCceeeEEEEEecCCcccce
Confidence 2221110 0001112478999999999999875432 22211111 122234568888777765433322225
Q ss_pred EEEeeccEEEeccEEEecce--eeeEeEeeccCCceeeecCCCcceEecCCCCC-CCCCCeEEEe
Q psy1758 261 TVLIQSGTLRCSDIVVAGAS--YGRIRSMLNENGKNILEAGPSIPVEIQGLTKV-PFSGEELFVI 322 (1527)
Q Consensus 261 ~~~v~~G~l~~gd~vv~g~~--~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~-~~~G~~~~~~ 322 (1527)
.|+|.+|+|++||.|++++. ..+|++|+.++ ..+..|.||+.+.+..-... ..+|+++...
T Consensus 264 ~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~-~~v~~A~aG~~V~l~L~~~~~i~rG~VL~~~ 327 (474)
T PRK05124 264 AGTLASGVVKVGDRVKVLPSGKESNVARIVTFD-GDLEEAFAGEAITLVLEDEIDISRGDLLVAA 327 (474)
T ss_pred EEEEEeEEEecCCEEEEecCCceEEEEEEEEcC-ccccCcCCCCEEEEEeCCccccCCccEEECC
Confidence 68999999999999998765 57999998654 47899999999988743222 2689877643
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-23 Score=265.52 Aligned_cols=301 Identities=23% Similarity=0.233 Sum_probs=229.2
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccc------------------cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVV------------------FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~------------------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~ 130 (1527)
-.+|+|+||+|||||||+++|...... .....|+|++.....+.|++.+++|||||||.+|.
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT 89 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence 358999999999999999999642210 11246899999999999999999999999999999
Q ss_pred HHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc------------
Q psy1758 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI------------ 198 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~------------ 198 (1527)
..+.++++.+|++++|+|+.++...++..++..+...++|+++|+||+|+..++.......+......
T Consensus 90 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipis~~ 169 (689)
T TIGR00484 90 VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLPIGAE 169 (689)
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEeccccC
Confidence 99999999999999999999999999999999999999999999999999875544333332211000
Q ss_pred -------------------------------------------------------------------ccc----------
Q psy1758 199 -------------------------------------------------------------------PEE---------- 201 (1527)
Q Consensus 199 -------------------------------------------------------------------~~~---------- 201 (1527)
.++
T Consensus 170 ~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l~~~~~ 249 (689)
T TIGR00484 170 DNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNAIRKGVL 249 (689)
T ss_pred CCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 000
Q ss_pred cCCCCcEEEeeccCCCChhHHHHHHHHHHHHHh-----------------hcCCCCCCCceEEEEEeecCCCceEEEEEe
Q psy1758 202 YGGASPFISISAKTGVGINKLLENISLQAEILE-----------------LKAPVTTPAKGVIIESRLDKGKGPVATVLI 264 (1527)
Q Consensus 202 ~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~-----------------~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v 264 (1527)
.+..+|++..||+++.|++.|++.|......+. ...+++.|+.++|++...+++.|.+++++|
T Consensus 250 ~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~i~~~RV 329 (689)
T TIGR00484 250 NCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVATDPFVGQLTFVRV 329 (689)
T ss_pred cCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEeeecCCCCeEEEEEE
Confidence 023468999999999999999999975431110 011235678899999999999999999999
Q ss_pred eccEEEeccEEEecce--eeeEeEe---eccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhch
Q psy1758 265 QSGTLRCSDIVVAGAS--YGRIRSM---LNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKF 339 (1527)
Q Consensus 265 ~~G~l~~gd~vv~g~~--~~kVr~i---~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~ 339 (1527)
++|+|+.||.|..... ..+|..+ ......++.++.+|+.+.|.|++.. ..||++....+.
T Consensus 330 ~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~gdtl~~~~~~-------------- 394 (689)
T TIGR00484 330 YSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDT-TTGDTLCDPKID-------------- 394 (689)
T ss_pred EEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEcCCCCC-CCCCEEeCCCCc--------------
Confidence 9999999999976432 2344444 4444467899999999999999877 789988522110
Q ss_pred HHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEE
Q psy1758 340 RDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVI 399 (1527)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv 399 (1527)
..+.. + .-....+.+.|.+...+-.+.|.++|.++......++|.
T Consensus 395 ----------~~~~~----~-~~~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~ 439 (689)
T TIGR00484 395 ----------VILER----M-EFPEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTF 439 (689)
T ss_pred ----------cccCC----C-CCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEE
Confidence 00000 1 012356888899999999999999999997776677763
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-24 Score=236.42 Aligned_cols=186 Identities=30% Similarity=0.325 Sum_probs=145.0
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCccccc--cc-------------ccceecchhhhhcccceeEeeeeEEEEecCeEEE
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKN--QN-------------INARIMDSNEIEKERGITIFSKNCSIEYNGTRIN 988 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~--~~-------------~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~in 988 (1527)
||+|+||+|||||||+++|++.++.+... +. ...+++|..+.|++||+|+++....+.|++.+++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999999998887621 11 1247899999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCCCCCh---hhhHHHHHHH
Q psy1758 989 IIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNARP---EWVVDATFDL 1064 (1527)
Q Consensus 989 iiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~~a~~---~~v~~~~~~~ 1064 (1527)
|||||||.+|..++..+++.+|++|+|+|+++|+..|++.++..+...++|. |+|+||+|+.+.+. +.+.+++...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~ 160 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAF 160 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888888775 56899999976432 2344555544
Q ss_pred HhhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCC
Q psy1758 1065 FDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1065 ~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p 1114 (1527)
+..++.. ..|++++||++|.+..+... .+.--..|+++| +.+|+|
T Consensus 161 ~~~~~~~----~~~ii~iSA~~g~ni~~~~~~~~w~~g~~~~~~~-~~~~~~ 207 (208)
T cd04166 161 AAKLGIE----DITFIPISALDGDNVVSRSENMPWYSGPTLLEHL-ETVPIA 207 (208)
T ss_pred HHHcCCC----CceEEEEeCCCCCCCccCCCCCCCCCCCcHHHHH-hcCCCC
Confidence 4444321 24699999999975433211 111114667766 555554
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=263.69 Aligned_cols=303 Identities=23% Similarity=0.241 Sum_probs=230.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc------------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV------------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAF 129 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~------------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f 129 (1527)
+-.+|+|+||+|||||||+++|..... ......|+|++.....+.|.+.+++|+|||||.+|
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 345899999999999999999963211 11135689999999999999999999999999999
Q ss_pred HHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc-----------
Q psy1758 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI----------- 198 (1527)
Q Consensus 130 ~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~----------- 198 (1527)
...+.++++.+|++|+|+|+.+|+..|+..++..+...++|+|+++||+|+.+++.......+......
T Consensus 89 ~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipisa 168 (693)
T PRK00007 89 TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLPIGA 168 (693)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEecCcc
Confidence 999999999999999999999999999999999999999999999999999865544333332111000
Q ss_pred -----------------c----------------------------------------------------c---------
Q psy1758 199 -----------------P----------------------------------------------------E--------- 200 (1527)
Q Consensus 199 -----------------~----------------------------------------------------~--------- 200 (1527)
+ +
T Consensus 169 ~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~~l~~~ 248 (693)
T PRK00007 169 EDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKAALRKA 248 (693)
T ss_pred CCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 0 0
Q ss_pred -ccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHh------------------hcCCCCCCCceEEEEEeecCCCceEEE
Q psy1758 201 -EYGGASPFISISAKTGVGINKLLENISLQAEILE------------------LKAPVTTPAKGVIIESRLDKGKGPVAT 261 (1527)
Q Consensus 201 -~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~------------------~~~~~~~p~~~~v~~~~~~~~~G~v~~ 261 (1527)
..+..+|++..||+++.|++.|++.|......+. ...+++.|+.++|++...++..|.+++
T Consensus 249 ~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~ia~ 328 (693)
T PRK00007 249 TIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPFVGKLTF 328 (693)
T ss_pred HhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeecCCCCcEEE
Confidence 0013568999999999999999999975431110 001235578899999999999999999
Q ss_pred EEeeccEEEeccEEEecc--eeeeEeEee---ccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhh
Q psy1758 262 VLIQSGTLRCSDIVVAGA--SYGRIRSML---NENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQ 336 (1527)
Q Consensus 262 ~~v~~G~l~~gd~vv~g~--~~~kVr~i~---~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~ 336 (1527)
++|++|+|+.||.|.... ...+|..++ .....++.++.+|+.+.|.|++.. ..||.+...+..
T Consensus 329 ~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~GdtL~~~~~~----------- 396 (693)
T PRK00007 329 FRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDT-TTGDTLCDEKNP----------- 396 (693)
T ss_pred EEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEEeCCccC-CcCCEeeCCCCc-----------
Confidence 999999999999997542 234555554 444567899999999999999876 689988522100
Q ss_pred hchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEe
Q psy1758 337 GKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIH 400 (1527)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~ 400 (1527)
..+.. + .-....+.+-|.+...+....|.++|..+..+...++|..
T Consensus 397 -------------~~l~~----~-~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~ 442 (693)
T PRK00007 397 -------------IILES----M-EFPEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVST 442 (693)
T ss_pred -------------cccCC----C-CCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEE
Confidence 00000 0 0123567788999999999999999999977776777743
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=231.07 Aligned_cols=257 Identities=25% Similarity=0.308 Sum_probs=197.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccc---------------------------------cccCCceeEEEEEEEEEeC
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVV---------------------------------FSEAGGITQHIGAYNVVTN 114 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~---------------------------------~~~~~giT~~~~~~~~~~~ 114 (1527)
...+++.+|+++.|||||+.+|..+.-. .....|||+|+.+..+.++
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 4567999999999999999998654211 1122499999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHHHHHHHh
Q psy1758 115 HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLI 193 (1527)
Q Consensus 115 ~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~~~~~l~ 193 (1527)
.+++.+.||||||.|...|..+++.||++|+++||..|+.+||+.|-..+...+++ +++++|||||.+.+.+.+.....
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~ 164 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVA 164 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 89999999999988776655544
Q ss_pred hhcccccccC-CCCcEEEeeccCCCChhHHHHHHHHH-----HHHHh---h-cCCCCCCCceEEEEEee--cCCCceEEE
Q psy1758 194 SEQVIPEEYG-GASPFISISAKTGVGINKLLENISLQ-----AEILE---L-KAPVTTPAKGVIIESRL--DKGKGPVAT 261 (1527)
Q Consensus 194 ~~~~~~~~~~-~~~~v~~iSAktg~gI~eL~~~l~~~-----~~~~~---~-~~~~~~p~~~~v~~~~~--~~~~G~v~~ 261 (1527)
....+..+++ ....++|+||+.|.||-.--+.+-+. .+.++ . ......|++..|.-+.. ...+| ..
T Consensus 165 dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v~i~~~~~~~~~RfPVQ~V~Rp~~dfRG--ya 242 (431)
T COG2895 165 DYLAFAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEILETVEIADDRSAKAFRFPVQYVNRPNLDFRG--YA 242 (431)
T ss_pred HHHHHHHHcCCCcceEEechhccCCcccccccCCCcccCccHHHHHhhccccccccccceeeceEEecCCCCcccc--cc
Confidence 4444444443 33589999999999987544333211 11111 1 11223456665555433 23444 35
Q ss_pred EEeeccEEEeccEEEecce--eeeEeEeeccCCceeeecCCCcceEecCCCCCC-CCCCeEEEeCChhH
Q psy1758 262 VLIQSGTLRCSDIVVAGAS--YGRIRSMLNENGKNILEAGPSIPVEIQGLTKVP-FSGEELFVILNEKK 327 (1527)
Q Consensus 262 ~~v~~G~l~~gd~vv~g~~--~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~-~~G~~~~~~~~e~~ 327 (1527)
+++.+|++++||.|++-|+ ..+|++|..++| +.++|.+|++|.+.--+++. .+||.+....+...
T Consensus 243 GtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg-~~~~A~aG~aVtl~L~deidisRGd~i~~~~~~~~ 310 (431)
T COG2895 243 GTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDG-ELAQASAGEAVTLVLADEIDISRGDLIVAADAPPA 310 (431)
T ss_pred eeeeccceecCCeEEEccCCCeeeEEEEeccCC-chhhccCCceEEEEEcceeecccCcEEEccCCCcc
Confidence 6789999999999988554 579999999887 68999999999998667777 79998887765543
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-23 Score=226.42 Aligned_cols=252 Identities=29% Similarity=0.354 Sum_probs=187.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccc----------------cccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTN----------------VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~----------------~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~ 131 (1527)
.-.+|..+||+|||||||..+++..- .......|||++.....++..++.+-.+|+|||.+|.+
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK 90 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK 90 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH
Confidence 34679999999999999998875321 12334469999999999999999999999999999999
Q ss_pred HHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcc-hhHHH----HHHHhhhcccccccCCC
Q psy1758 132 MRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDI-NLDRI----KQDLISEQVIPEEYGGA 205 (1527)
Q Consensus 132 ~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~-~~~~~----~~~l~~~~~~~~~~~~~ 205 (1527)
++..++.+.|++|||++|+||.+|||++++..++..++| +++++||+|+.+. +..+. ..++.....+ -+..
T Consensus 91 NMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f---~gd~ 167 (394)
T COG0050 91 NMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF---PGDD 167 (394)
T ss_pred HHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC---CCCC
Confidence 999999999999999999999999999999999999998 8899999999872 21111 1122211111 1356
Q ss_pred CcEEEeeccCCC--------ChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEe
Q psy1758 206 SPFISISAKTGV--------GINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVA 277 (1527)
Q Consensus 206 ~~v~~iSAktg~--------gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~ 277 (1527)
.|++..||+.-- .|.+|++++..+ +..+..+.+.|+...|-+++...++|++++++|.+|+|++|+++.+
T Consensus 168 ~Pii~gSal~ale~~~~~~~~i~eLm~avd~y--ip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~evei 245 (394)
T COG0050 168 TPIIRGSALKALEGDAKWEAKIEELMDAVDSY--IPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEI 245 (394)
T ss_pred cceeechhhhhhcCCcchHHHHHHHHHHHHhc--CCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEE
Confidence 799999987532 345666665422 2334455678999999999999999999999999999999999865
Q ss_pred -cce---eeeEeEeeccCC-ceeeecCCCcceEecCCCCCC-CCCCeEEEeCC
Q psy1758 278 -GAS---YGRIRSMLNENG-KNILEAGPSIPVEIQGLTKVP-FSGEELFVILN 324 (1527)
Q Consensus 278 -g~~---~~kVr~i~~~~g-~~v~~a~~~~~v~I~gl~~~~-~~G~~~~~~~~ 324 (1527)
|-. ...+..+..... ..-..|+++..+-+.|.++-. .+|+++..=.+
T Consensus 246 vG~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpgs 298 (394)
T COG0050 246 VGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGS 298 (394)
T ss_pred ecccccceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecceEeecCCc
Confidence 433 223332221111 123457777788888887655 68887765433
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=262.32 Aligned_cols=301 Identities=22% Similarity=0.230 Sum_probs=228.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc------------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV------------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAF 129 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~------------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f 129 (1527)
+-.+|+|+||+|||||||+++|..... ......|+|++.....+.|++.+++|||||||.+|
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 456899999999999999999964211 01135689999999999999999999999999999
Q ss_pred HHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc-----------
Q psy1758 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI----------- 198 (1527)
Q Consensus 130 ~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~----------- 198 (1527)
...+.++++.+|++++|+|+.+++..|+..++..+...++|+|+++||+|+...+......++......
T Consensus 87 ~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~~iPis~ 166 (691)
T PRK12739 87 TIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQLPIGA 166 (691)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEecccc
Confidence 999999999999999999999999999999999999999999999999999865443333322211000
Q ss_pred ------------------cc------------------------------------------------------------
Q psy1758 199 ------------------PE------------------------------------------------------------ 200 (1527)
Q Consensus 199 ------------------~~------------------------------------------------------------ 200 (1527)
..
T Consensus 167 ~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l~~~ 246 (691)
T PRK12739 167 EDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAAIRKA 246 (691)
T ss_pred cccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 00
Q ss_pred -ccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHh-----------------hcCCCCCCCceEEEEEeecCCCceEEEE
Q psy1758 201 -EYGGASPFISISAKTGVGINKLLENISLQAEILE-----------------LKAPVTTPAKGVIIESRLDKGKGPVATV 262 (1527)
Q Consensus 201 -~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~-----------------~~~~~~~p~~~~v~~~~~~~~~G~v~~~ 262 (1527)
..+..+|++..||.++.|++.|++.|......+. ...+++.|+.++|++...+++.|.++++
T Consensus 247 ~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~ 326 (691)
T PRK12739 247 TINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIMTDPFVGRLTFF 326 (691)
T ss_pred HHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEeeeCCCCCeEEEE
Confidence 0012358999999999999999999985431110 0113456788999999999999999999
Q ss_pred EeeccEEEeccEEEecce--eeeE---eEeeccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhh
Q psy1758 263 LIQSGTLRCSDIVVAGAS--YGRI---RSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQG 337 (1527)
Q Consensus 263 ~v~~G~l~~gd~vv~g~~--~~kV---r~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~ 337 (1527)
+|++|+|+.||.|..... ..+| ..+......++.++.+|+.+.|.|++.. ..||.+..-...
T Consensus 327 RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~gdtl~~~~~~------------ 393 (691)
T PRK12739 327 RVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDT-TTGDTLCDEKAP------------ 393 (691)
T ss_pred EEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEeCCCcc-cCCCEEeCCCCc------------
Confidence 999999999999975432 2344 4454555577899999999999999876 889988522110
Q ss_pred chHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeE
Q psy1758 338 KFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQV 398 (1527)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~i 398 (1527)
..+.. +. -....+.+-|.+........+.++|.++......+.|
T Consensus 394 ------------~~l~~----~~-~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v 437 (691)
T PRK12739 394 ------------IILES----ME-FPEPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRV 437 (691)
T ss_pred ------------cccCC----CC-CCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEE
Confidence 00011 10 1135577888899999999999999999766656666
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=253.01 Aligned_cols=301 Identities=21% Similarity=0.265 Sum_probs=220.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc-cc---------------------cccCCceeEEEEEEEEEeCCeEEEEEeCC
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN-VV---------------------FSEAGGITQHIGAYNVVTNHGSITFLDTP 124 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~-~~---------------------~~~~~giT~~~~~~~~~~~~~~i~~iDTP 124 (1527)
.+..+|+|+||+|+|||||+++|.... .. .....|+|.......+.+++.+++|||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 456789999999999999999985311 10 11124788888888899999999999999
Q ss_pred ChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc------
Q psy1758 125 GHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI------ 198 (1527)
Q Consensus 125 G~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~------ 198 (1527)
||.+|.....++++.+|++|+|+|+.+++..++..++..+...++|+++++||+|+...+..+....+......
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~~~~~ 168 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAPIT 168 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCCccEE
Confidence 99999999999999999999999999999999999999888889999999999999765544332222110000
Q ss_pred ----------------------------------------------------------------cc----------ccCC
Q psy1758 199 ----------------------------------------------------------------PE----------EYGG 204 (1527)
Q Consensus 199 ----------------------------------------------------------------~~----------~~~~ 204 (1527)
.+ ..+.
T Consensus 169 ~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~ 248 (527)
T TIGR00503 169 WPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFHGGE 248 (527)
T ss_pred EEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHHhcCC
Confidence 00 0123
Q ss_pred CCcEEEeeccCCCChhHHHHHHHHHHHHHhhc-------CCCCCCCceEEEEEee--c-CCCceEEEEEeeccEEEeccE
Q psy1758 205 ASPFISISAKTGVGINKLLENISLQAEILELK-------APVTTPAKGVIIESRL--D-KGKGPVATVLIQSGTLRCSDI 274 (1527)
Q Consensus 205 ~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~-------~~~~~p~~~~v~~~~~--~-~~~G~v~~~~v~~G~l~~gd~ 274 (1527)
.+|+|+.||.++.||+.|++.+......+... .+.+.++.++|+++.. + +..|++++++|.+|+++.|+.
T Consensus 249 ~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf~RV~sG~l~~g~~ 328 (527)
T TIGR00503 249 MTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMK 328 (527)
T ss_pred eeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEEEEEeeeEEcCCCE
Confidence 46899999999999999999998654211100 1124578999999987 7 589999999999999999999
Q ss_pred EEecce--eeeEeEee---ccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhh
Q psy1758 275 VVAGAS--YGRIRSML---NENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKL 349 (1527)
Q Consensus 275 vv~g~~--~~kVr~i~---~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~ 349 (1527)
|....+ ..|+..++ ..+...+.+|.||+.+.+.+++.. ..||.+.. .. + +. +.
T Consensus 329 v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~-~~GDtl~~-~~-~----~~-~~-------------- 386 (527)
T TIGR00503 329 LKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTI-QIGDTFTQ-GE-K----IK-FT-------------- 386 (527)
T ss_pred EEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEECCCCc-ccCCEecC-CC-c----ee-ec--------------
Confidence 976433 34555554 444567899999999999998776 78998853 11 0 10 00
Q ss_pred hhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEE
Q psy1758 350 HKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVI 399 (1527)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv 399 (1527)
. + ..-.+.+..-|.+...+..+.+..+|.+|..+.. +++-
T Consensus 387 ----~----i-~~~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~ 426 (527)
T TIGR00503 387 ----G----I-PNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVF 426 (527)
T ss_pred ----C----C-CCCCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEE
Confidence 0 0 0112345666777788888888888888865553 5553
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=261.22 Aligned_cols=302 Identities=25% Similarity=0.318 Sum_probs=228.9
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccc------------------cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVV------------------FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAF 129 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~------------------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f 129 (1527)
+-.+|+|+||+|||||||+++|...... .....++|+......+.|++..++|||||||.+|
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 3468999999999999999999753210 0113577888888889999999999999999999
Q ss_pred HHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc-----------
Q psy1758 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI----------- 198 (1527)
Q Consensus 130 ~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~----------- 198 (1527)
..++..+++.+|++++|+|++++...++...|..+...++|+++|+||+|+..++......++......
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~P~~~ 166 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQLPIGS 166 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 999999999999999999999999999999999998899999999999999876654444433211000
Q ss_pred --------------------------------c--------------------------------c--------------
Q psy1758 199 --------------------------------P--------------------------------E-------------- 200 (1527)
Q Consensus 199 --------------------------------~--------------------------------~-------------- 200 (1527)
+ .
T Consensus 167 ~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~~~~ 246 (687)
T PRK13351 167 EDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPLREG 246 (687)
T ss_pred CCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 0 0
Q ss_pred -ccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhh----------------cCCCCCCCceEEEEEeecCCCceEEEEE
Q psy1758 201 -EYGGASPFISISAKTGVGINKLLENISLQAEILEL----------------KAPVTTPAKGVIIESRLDKGKGPVATVL 263 (1527)
Q Consensus 201 -~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~----------------~~~~~~p~~~~v~~~~~~~~~G~v~~~~ 263 (1527)
..+..+|++..||++|.|++.|++.|......+.. ..+++.|+.++|++...+++.|.+++++
T Consensus 247 ~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~R 326 (687)
T PRK13351 247 TRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYAGKLTYLR 326 (687)
T ss_pred HHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEeeecCCCceEEEEE
Confidence 00125689999999999999999999864321110 1133567889999999999999999999
Q ss_pred eeccEEEeccEEEecce--e---eeEeEeeccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhc
Q psy1758 264 IQSGTLRCSDIVVAGAS--Y---GRIRSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGK 338 (1527)
Q Consensus 264 v~~G~l~~gd~vv~g~~--~---~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~ 338 (1527)
|++|+|+.||.|.+... . +++..+......++.++.+|+.+.|.|++.. ..|+.+.......
T Consensus 327 V~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~gdtl~~~~~~~------------ 393 (687)
T PRK13351 327 VYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKEL-ETGDTLHDSADPV------------ 393 (687)
T ss_pred EeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEEECcccC-ccCCEEeCCCCcc------------
Confidence 99999999999987542 2 3555555555678899999999999999877 6799885322100
Q ss_pred hHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEE
Q psy1758 339 FRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVI 399 (1527)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv 399 (1527)
.+.. + ......+.+-|.+......+.|.++|.++..+...+.|-
T Consensus 394 ------------~~~~----~-~~~~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~ 437 (687)
T PRK13351 394 ------------LLEL----L-TFPEPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVE 437 (687)
T ss_pred ------------ccCC----C-CCCCccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEE
Confidence 0000 0 012245777889999999999999999997666566663
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-23 Score=241.06 Aligned_cols=142 Identities=31% Similarity=0.463 Sum_probs=131.7
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCccccccccc--ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
||+|+||+|+|||||+++|++.+|.+.+.+.+. .+++|..+.|++||+|+.+....+.|++++++|||||||.+|..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 699999999999999999999888877665553 367899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHH
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLF 1065 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~ 1065 (1527)
+.++++.+|++++|+|++.|...++..+|+.+...++|.++|+||+|+..+++++.++++++.+
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~ 144 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAF 144 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999888888888887765
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-22 Score=251.45 Aligned_cols=302 Identities=26% Similarity=0.312 Sum_probs=230.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc------------------cccCCceeEEEEEEEEEeCC-eEEEEEeCCChh
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV------------------FSEAGGITQHIGAYNVVTNH-GSITFLDTPGHE 127 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~------------------~~~~~giT~~~~~~~~~~~~-~~i~~iDTPG~e 127 (1527)
.+-.+|+|+||.+||||||.++|...... .....|+|+......+.|.+ ++++|||||||-
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 45678999999999999999998543221 12235999999999999996 999999999999
Q ss_pred hHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhh------------
Q psy1758 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISE------------ 195 (1527)
Q Consensus 128 ~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~------------ 195 (1527)
+|.....++++.+|++|+|+|+.+|+++||...|+++...++|.++++||+|+..++......++...
T Consensus 88 DFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~~pI 167 (697)
T COG0480 88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPVQLPI 167 (697)
T ss_pred ccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceeeeccc
Confidence 99999999999999999999999999999999999999999999999999999875543332222100
Q ss_pred --------------------c----------------------------------ccccc-c------------------
Q psy1758 196 --------------------Q----------------------------------VIPEE-Y------------------ 202 (1527)
Q Consensus 196 --------------------~----------------------------------~~~~~-~------------------ 202 (1527)
. ...+. .
T Consensus 168 g~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~~~ 247 (697)
T COG0480 168 GAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRKGT 247 (697)
T ss_pred cCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHHhh
Confidence 0 00000 0
Q ss_pred --CCCCcEEEeeccCCCChhHHHHHHHHHHHHH-h-----------------hcCCCCCCCceEEEEEeecCCCceEEEE
Q psy1758 203 --GGASPFISISAKTGVGINKLLENISLQAEIL-E-----------------LKAPVTTPAKGVIIESRLDKGKGPVATV 262 (1527)
Q Consensus 203 --~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~-~-----------------~~~~~~~p~~~~v~~~~~~~~~G~v~~~ 262 (1527)
+...|+++.||.++.|++.|++.+......+ + ...+.+.|+.+++++...++..|.++.+
T Consensus 248 ~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~l~~~ 327 (697)
T COG0480 248 IAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGKLTFV 327 (697)
T ss_pred hccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCCCeEEEE
Confidence 1257999999999999999999998543111 0 0223467899999999999999999999
Q ss_pred EeeccEEEeccEEEeccee--eeEeEeec---cCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhh
Q psy1758 263 LIQSGTLRCSDIVVAGASY--GRIRSMLN---ENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQG 337 (1527)
Q Consensus 263 ~v~~G~l~~gd~vv~g~~~--~kVr~i~~---~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~ 337 (1527)
+|++|+|+.|++++++... .||..+.. +...++.++.+|+.+.+.|++.. ..|+.+...+ ...
T Consensus 328 RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~-~tGdTl~~~~-~~v---------- 395 (697)
T COG0480 328 RVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDA-TTGDTLCDEN-KPV---------- 395 (697)
T ss_pred EEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEEccccc-ccCCeeecCC-Ccc----------
Confidence 9999999999999887543 55555544 44467889999999999999987 7999887554 210
Q ss_pred chHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeE
Q psy1758 338 KFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQV 398 (1527)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~i 398 (1527)
.++.+.. ..+.+.+-|.+..-...+.+..+|..+..++..+.+
T Consensus 396 -------------~~~~~~~-----pePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v 438 (697)
T COG0480 396 -------------ILESMEF-----PEPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRV 438 (697)
T ss_pred -------------ccccccC-----CCceEEEEEeECChhhHHHHHHHHHHHHhhCCceEE
Confidence 0111110 124456667777888888888889888665545554
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.5e-23 Score=221.53 Aligned_cols=174 Identities=40% Similarity=0.555 Sum_probs=145.9
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe-----cCeEEEEEeCCCCCC
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-----NGTRINIIDTPGHAD 997 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-----~~~~iniiDTPGh~d 997 (1527)
|||+++||+|+|||||+++|++..+.+.+.+. ...++|..+.|+++|+|+..+...+.| +++.++|||||||.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREM-KEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCC-ceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 79999999999999999999998777665433 346788999999999999988887766 467899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
|...+.++++.+|++|+|+|++++...++...|..+...++|+++|+||+|+.+.+.....+++.+.+ +.. ..
T Consensus 80 ~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~---~~~----~~ 152 (179)
T cd01890 80 FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVL---GLD----PS 152 (179)
T ss_pred hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHh---CCC----cc
Confidence 99999999999999999999999988888888888778899999999999997655444444444322 111 12
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
+++++||++|. |+++|++.+.+.+|+|
T Consensus 153 ~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~ 179 (179)
T cd01890 153 EAILVSAKTGL----------GVEDLLEAIVERIPPP 179 (179)
T ss_pred cEEEeeccCCC----------CHHHHHHHHHhhCCCC
Confidence 48999999998 9999999999999877
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-23 Score=229.03 Aligned_cols=190 Identities=32% Similarity=0.454 Sum_probs=148.3
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccc---cccccceecchhhhhcccceeEeeeeEEEEec-----CeEEEEEeCCC
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRK---NQNINARIMDSNEIEKERGITIFSKNCSIEYN-----GTRINIIDTPG 994 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~---~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-----~~~iniiDTPG 994 (1527)
|||+|+||+|||||||+++|++.++...+ ......+++|..+.|+++|+|+......+.|. .+.+++|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 79999999999999999999998877653 22233468899999999999999998888775 37899999999
Q ss_pred CCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCC-----------ChhhhHHHHHH
Q psy1758 995 HADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-----------RPEWVVDATFD 1063 (1527)
Q Consensus 995 h~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a-----------~~~~v~~~~~~ 1063 (1527)
|.+|...+.+++..+|++|+|+|+.++...++..+++.+...++|.++|+||+|+... ...+.++++..
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~ 160 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNN 160 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999889988888888888999999999998521 12223333333
Q ss_pred HHhhhcccccccCCc----EEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1064 LFDKLCATEEQLDFP----VIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1064 ~~~~l~~~~~~~~~p----vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.+..........-+| +++.||+.||+. +.. .-.++.+|+++|.+++|+|
T Consensus 161 ~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~-~~~-~~~~~~~~~~~~~~~~~~~ 213 (213)
T cd04167 161 IIASFSTTLSFLFSPENGNVCFASSKFGFCF-TLE-SFAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHhcCCCceEeccCCCeEEEEecCCCeEE-ecH-HHHhhhhHHHHHHhhCCCC
Confidence 333333222111244 889999999953 211 1135669999999999987
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-22 Score=255.88 Aligned_cols=250 Identities=22% Similarity=0.270 Sum_probs=180.9
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccc---------------------------------cccCCceeEEEEEEEEEeCC
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVV---------------------------------FSEAGGITQHIGAYNVVTNH 115 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~---------------------------------~~~~~giT~~~~~~~~~~~~ 115 (1527)
..+|+++||+|+|||||+++|...... .....|+|++.....+.+++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 357999999999999999998753211 11125788999988999999
Q ss_pred eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCC-CEEEEEEcccCCcchhHHHHHHHhh
Q psy1758 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGV-PLIVAINKIDKLDINLDRIKQDLIS 194 (1527)
Q Consensus 116 ~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~v-piIvviNKiDl~~~~~~~~~~~l~~ 194 (1527)
.+++|+|||||++|...+..++..+|++++|+|+++|+.+|+.+++..+...++ |+|||+||+|+.+.+.+.......+
T Consensus 104 ~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~ 183 (632)
T PRK05506 104 RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVAD 183 (632)
T ss_pred ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHH
Confidence 999999999999999988899999999999999999999999999998888886 5889999999975333222111111
Q ss_pred hcccccccC-CCCcEEEeeccCCCChhH------------HHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEE
Q psy1758 195 EQVIPEEYG-GASPFISISAKTGVGINK------------LLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVAT 261 (1527)
Q Consensus 195 ~~~~~~~~~-~~~~v~~iSAktg~gI~e------------L~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~ 261 (1527)
.......++ ...+++++||++|.|+++ |++.|.. ........+.|++..|...+.....+.-+.
T Consensus 184 i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~---~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~ 260 (632)
T PRK05506 184 YRAFAAKLGLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLET---VEIASDRNLKDFRFPVQYVNRPNLDFRGFA 260 (632)
T ss_pred HHHHHHHcCCCCccEEEEecccCCCccccccCCCcccHhHHHHHHhc---CCCCCCcCCCCceeeEEEEEecCCCceEEE
Confidence 100011111 246899999999999985 4433321 111122245688877777654322222257
Q ss_pred EEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEecCCCCCC-CCCCeEEEe
Q psy1758 262 VLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEIQGLTKVP-FSGEELFVI 322 (1527)
Q Consensus 262 ~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~-~~G~~~~~~ 322 (1527)
|+|.+|+|++||.|++++ ...+|++|+.+ +..+.+|.||+.+.+..-.... .+|+++...
T Consensus 261 G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~-~~~~~~a~aG~~v~i~l~~~~~i~rG~vL~~~ 323 (632)
T PRK05506 261 GTVASGVVRPGDEVVVLPSGKTSRVKRIVTP-DGDLDEAFAGQAVTLTLADEIDISRGDMLARA 323 (632)
T ss_pred EEEecceeecCCEEEEcCCCceEEEEEEEEC-CceeCEEcCCCeEEEEecCccccCCccEEecC
Confidence 899999999999999865 45799999765 4569999999999887432222 678877643
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=253.62 Aligned_cols=296 Identities=26% Similarity=0.303 Sum_probs=225.8
Q ss_pred EecCCCChhHHHHHHHccccc------------------cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhh
Q psy1758 75 MGHVDHGKTSLLDYIRKTNVV------------------FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARG 136 (1527)
Q Consensus 75 vG~~~~GKTSLl~~L~~~~~~------------------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~ 136 (1527)
+||+|||||||+++|...... .....|+|+......+.+++..++|||||||.+|...+.++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999433211 12236899999999999999999999999999999999999
Q ss_pred ccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc------------------
Q psy1758 137 AKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI------------------ 198 (1527)
Q Consensus 137 ~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~------------------ 198 (1527)
++.+|++++|+|++++...++...+..+...++|+++|+||+|+...+.......+......
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~~ 160 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTGV 160 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCceEE
Confidence 99999999999999999999999999998899999999999999865544443333221000
Q ss_pred ----------------------c-------------------------------------c----------ccCCCCcEE
Q psy1758 199 ----------------------P-------------------------------------E----------EYGGASPFI 209 (1527)
Q Consensus 199 ----------------------~-------------------------------------~----------~~~~~~~v~ 209 (1527)
+ + ..+..+|++
T Consensus 161 id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~Pv~ 240 (668)
T PRK12740 161 VDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIVPVF 240 (668)
T ss_pred EECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 0 0 001346899
Q ss_pred EeeccCCCChhHHHHHHHHHHHHHh---------------hcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccE
Q psy1758 210 SISAKTGVGINKLLENISLQAEILE---------------LKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDI 274 (1527)
Q Consensus 210 ~iSAktg~gI~eL~~~l~~~~~~~~---------------~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~ 274 (1527)
.+||++|.|++.|++.|......+. ...+++.|+.++|++...+++.|.++.++|++|+|++||.
T Consensus 241 ~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~L~~g~~ 320 (668)
T PRK12740 241 CGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSGTLKKGDT 320 (668)
T ss_pred eccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCE
Confidence 9999999999999999975421111 0113356788999999999999999999999999999999
Q ss_pred EEecce-----eeeEeEeeccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhh
Q psy1758 275 VVAGAS-----YGRIRSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKL 349 (1527)
Q Consensus 275 vv~g~~-----~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~ 349 (1527)
|.+++. .++|..+...+..++.++.+|+.+.|.|++.+ ..|+.+.......
T Consensus 321 v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~-~~Gdtl~~~~~~~----------------------- 376 (668)
T PRK12740 321 LYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDA-ATGDTLCDKGDPI----------------------- 376 (668)
T ss_pred EEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEeccCcc-CCCCEEeCCCCcc-----------------------
Confidence 988653 23555555556678999999999999999764 7899885221100
Q ss_pred hhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEe
Q psy1758 350 HKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIH 400 (1527)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~ 400 (1527)
.+.. +. ...+.+.+.|.+...+..+.|.++|.++..+...++|..
T Consensus 377 -~~~~----~~-~~~P~~~~~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v~~ 421 (668)
T PRK12740 377 -LLEP----ME-FPEPVISLAIEPKDKGDEEKLSEALGKLAEEDPTLRVER 421 (668)
T ss_pred -ccCC----CC-CCCcceEEEEEECCcchHHHHHHHHHHHHHhCCeEEEEE
Confidence 0000 11 123568889999999999999999999987776777743
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-22 Score=222.44 Aligned_cols=166 Identities=31% Similarity=0.339 Sum_probs=135.8
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec-------------------
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN------------------- 983 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~------------------- 983 (1527)
+||||+||+|||||||+++|... .+|..+.|.+||+|+......+.|.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~-------------~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV-------------WTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDS 67 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-------------CCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccc
Confidence 48999999999999999999432 2477888999999999988887775
Q ss_pred --------C------eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC-CChhHHHHHHHHHHcCCc-cEEEEecc
Q psy1758 984 --------G------TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTRFVTRKALKLGFK-PIVVVNKI 1047 (1527)
Q Consensus 984 --------~------~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G-~~~qt~~~~~~~~~~glp-~IvviNKi 1047 (1527)
+ ++++|||||||.+|..++.+++..+|++++|+|+.++ +.+|+..++..+...+++ +++|+||+
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 68 PECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred ccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 3 7899999999999999999999999999999999984 778999999888877874 67899999
Q ss_pred CCCCC-ChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCC
Q psy1758 1048 DRSNA-RPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 1115 (1527)
Q Consensus 1048 D~~~a-~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 1115 (1527)
|+.+. ......+++++.+.... ...+|++++||++|. |++.|++.+.+.+|.|+
T Consensus 148 Dl~~~~~~~~~~~~i~~~~~~~~----~~~~~i~~vSA~~g~----------gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 148 DLVKEEQALENYEQIKKFVKGTI----AENAPIIPISAQLKY----------NIDVLLEYIVKKIPTPP 202 (203)
T ss_pred hccCHHHHHHHHHHHHHHHhccc----cCCCcEEEEeCCCCC----------CHHHHHHHHHHhCCCCC
Confidence 99653 22333444444432211 124689999999998 99999999999999875
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-22 Score=219.12 Aligned_cols=173 Identities=27% Similarity=0.290 Sum_probs=141.7
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--------------CeEEEE
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--------------GTRINI 989 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--------------~~~ini 989 (1527)
||+++||+|+|||||+++|+...+ ...+|....|++||+|+.....++.+. ++.+++
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~---------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 72 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIAS---------TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITL 72 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccc---------hhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEE
Confidence 899999999999999999986521 234688889999999999998888876 789999
Q ss_pred EeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCC-ChhhhHHHHHHHHhhh
Q psy1758 990 IDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-RPEWVVDATFDLFDKL 1068 (1527)
Q Consensus 990 iDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a-~~~~v~~~~~~~~~~l 1068 (1527)
||||||.+|...+.+++..+|++++|+|+.+|+..++...+..+...+.|+++|+||+|+... ..+...+++.+.+...
T Consensus 73 ~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~ 152 (192)
T cd01889 73 VDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT 152 (192)
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999989999999999999999999999988777777789999999999999743 2334455555443321
Q ss_pred cccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCC
Q psy1758 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 1115 (1527)
Q Consensus 1069 ~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 1115 (1527)
-.......+|++++||++|. |+++|++.+.+.+|+|.
T Consensus 153 ~~~~~~~~~~vi~iSa~~g~----------gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 153 LEKTRFKNSPIIPVSAKPGG----------GEAELGKDLNNLIVLPL 189 (192)
T ss_pred HHhcCcCCCCEEEEeccCCC----------CHHHHHHHHHhcccccc
Confidence 11011235789999999998 99999999999999874
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >KOG0460|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-22 Score=218.28 Aligned_cols=252 Identities=30% Similarity=0.328 Sum_probs=184.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccc----------------cccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTN----------------VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~----------------~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~ 131 (1527)
...+|.-+||++||||||..+++... .......|||++.....++...+.+--+|+|||.+|.+
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK 132 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK 132 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence 34578999999999999998885421 12334469999998888888888999999999999999
Q ss_pred HHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCc-chhHHHHH-HHhhhcccccccCCCCcE
Q psy1758 132 MRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLD-INLDRIKQ-DLISEQVIPEEYGGASPF 208 (1527)
Q Consensus 132 ~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~-~~~~~~~~-~l~~~~~~~~~~~~~~~v 208 (1527)
++..++.+.|++|||++++||.+|||+|++..++.-+++ +++++||.|+.+ ++.-+..+ ++.+......-.+.++|+
T Consensus 133 NMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~Pv 212 (449)
T KOG0460|consen 133 NMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPV 212 (449)
T ss_pred HhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCe
Confidence 999999999999999999999999999999999999998 899999999984 22211111 111111111112567899
Q ss_pred EEeeccC---C----CC---hhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEe-
Q psy1758 209 ISISAKT---G----VG---INKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVA- 277 (1527)
Q Consensus 209 ~~iSAkt---g----~g---I~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~- 277 (1527)
+..||+. | .| |..|++++-.. +..+....+.|+...|-+.+..+|+|+|+++++.+|+|++||++-+
T Consensus 213 I~GSAL~ALeg~~peig~~aI~kLldavDsy--ip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eiv 290 (449)
T KOG0460|consen 213 IRGSALCALEGRQPEIGLEAIEKLLDAVDSY--IPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIV 290 (449)
T ss_pred eecchhhhhcCCCccccHHHHHHHHHHHhcc--CCCcccccCCCceeehhheeeecCCceEEEEEEeecccccCCEEEEe
Confidence 9998864 3 23 44455544321 3334455678999899999999999999999999999999999855
Q ss_pred ccee---eeEeEeeccCCceeeecCCCcce--EecCCCCCC-CCCCeEEEe
Q psy1758 278 GASY---GRIRSMLNENGKNILEAGPSIPV--EIQGLTKVP-FSGEELFVI 322 (1527)
Q Consensus 278 g~~~---~kVr~i~~~~g~~v~~a~~~~~v--~I~gl~~~~-~~G~~~~~~ 322 (1527)
|... ..|..+. .-++.+++|.+|+-+ -+.|++.-+ .+|.++..-
T Consensus 291 G~~~~lkttvtgie-mF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~p 340 (449)
T KOG0460|consen 291 GHNKTLKTTVTGIE-MFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKP 340 (449)
T ss_pred ccCcceeeEeehHH-HHHHHHHhcccccceehhhhcCCHHHHhcccEEecC
Confidence 4332 3444443 233567777777654 456777554 677766543
|
|
| >PF02033 RBFA: Ribosome-binding factor A; InterPro: IPR000238 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-22 Score=199.69 Aligned_cols=104 Identities=39% Similarity=0.696 Sum_probs=93.3
Q ss_pred ccchhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecCChhhHHHHHHHHHHhhHHHHHHHhccccc
Q psy1758 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLSKKLHI 620 (1527)
Q Consensus 541 r~~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~~~~~~~~~~~~l~~~~g~ir~~l~~~l~l 620 (1527)
|..|.++.+++.|++++..+++||++.++|||+|++|+|+++|+|||++++++.+.++++++|++++||||+.||++|+|
T Consensus 1 R~~Rv~~~i~~~i~~il~~~~~d~~l~~vtIt~V~ls~Dl~~a~Vy~~~~~~~~~~~~~~~~L~~~~~~iR~~l~~~l~l 80 (104)
T PF02033_consen 1 RQQRVESLIQREISEILQREIKDPRLKLVTITRVELSPDLSHAKVYVSILGDEEEQEEVLEALNKAAGFIRHELAKRLNL 80 (104)
T ss_dssp THHHHHHHHHHHHHHHHCTCTSSCGHHCEEEEEEEECTTSSEEEEEEEESSSHHHHHHHHHHHHHTHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHHHHHHHhhccCcCcceEEEEEEEECCCCCEEEEEEEEecCchhHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 45688899999999999999999999999999999999999999999999888888999999999999999999999999
Q ss_pred ccCCeEEEEeccchhhHHHHHHHH
Q psy1758 621 HTLPILNFFYDNSIENAMMISKLI 644 (1527)
Q Consensus 621 r~~P~l~F~~D~s~~~~~~i~~ll 644 (1527)
|++|+|+|++|+++|++.+|++||
T Consensus 81 r~~P~L~F~~D~~~e~~~~i~~ll 104 (104)
T PF02033_consen 81 RRVPELRFVYDDSIEKAARIEKLL 104 (104)
T ss_dssp SSG-EEEEEESTTTSSS------S
T ss_pred CcCCEEEEEECCCHHHHHHHHHhC
Confidence 999999999999999999999986
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosome-binding factor A [] (gene rbfA) is a bacterial protein that associates with free 30S ribosomal subunits. It does not associate with 30S subunits that are part of 70S ribosomes or polysomes. It is essential for efficient processing of 16S rRNA. Ribosome-binding factor A is a protein of from 13 to 15 Kd which is found in most bacteria. A putative chloroplastic form seems to exist in plants.; GO: 0006364 rRNA processing; PDB: 2R1C_A 2DYJ_B 2KZF_A 2E7G_A 1JOS_A 1KKG_A 1PA4_A. |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.87 E-value=8e-22 Score=216.55 Aligned_cols=161 Identities=36% Similarity=0.540 Sum_probs=132.9
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccc------------------cccCCceeEEEEEEEEE--eCCeEEEEEeCCChhh
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVV------------------FSEAGGITQHIGAYNVV--TNHGSITFLDTPGHEA 128 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~------------------~~~~~giT~~~~~~~~~--~~~~~i~~iDTPG~e~ 128 (1527)
-.+|+++||+|||||||+++|...... .....++|.+.....+. +.+..++|+|||||.+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 357999999999999999999754421 12335889999899998 8999999999999999
Q ss_pred HHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccC--CCC
Q psy1758 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYG--GAS 206 (1527)
Q Consensus 129 f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~--~~~ 206 (1527)
|...+.++++.+|++|+|+|+.+|...++.+++..+...++|+|+|+||+|+...+..+...++.........+. ..+
T Consensus 83 f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (188)
T PF00009_consen 83 FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIV 162 (188)
T ss_dssp HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTE
T ss_pred eeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccc
Confidence 999999999999999999999999999999999999999999999999999986555555554443222112222 257
Q ss_pred cEEEeeccCCCChhHHHHHHHHH
Q psy1758 207 PFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 207 ~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
|++++||++|.|+++|++.|...
T Consensus 163 ~vi~~Sa~~g~gi~~Ll~~l~~~ 185 (188)
T PF00009_consen 163 PVIPISALTGDGIDELLEALVEL 185 (188)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHHh
Confidence 99999999999999999999643
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.9e-21 Score=246.77 Aligned_cols=303 Identities=24% Similarity=0.273 Sum_probs=215.5
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccc----------------cccCCceeEEEEEEEEEe----CCeEEEEEeCCChh
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVV----------------FSEAGGITQHIGAYNVVT----NHGSITFLDTPGHE 127 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~----------------~~~~~giT~~~~~~~~~~----~~~~i~~iDTPG~e 127 (1527)
+-.+|+++||+|||||||+++|...... .....|+|++.....+.| .+..++|+|||||.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 4568999999999999999998653211 112247787777655554 46789999999999
Q ss_pred hHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh----HHHHHHHh----------
Q psy1758 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL----DRIKQDLI---------- 193 (1527)
Q Consensus 128 ~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~----~~~~~~l~---------- 193 (1527)
+|...+.++++.+|++|+|+|+.+|+..++..+|..+...+.|+|+++||+|+..++. ......+.
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~~l 178 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKLI 178 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888999999999999874321 11111110
Q ss_pred h-hc--cccccc---CCCCcEEEeeccCCCChh----------------------------------HHHHHHHHHHHHH
Q psy1758 194 S-EQ--VIPEEY---GGASPFISISAKTGVGIN----------------------------------KLLENISLQAEIL 233 (1527)
Q Consensus 194 ~-~~--~~~~~~---~~~~~v~~iSAktg~gI~----------------------------------eL~~~l~~~~~~~ 233 (1527)
. .. .....| .....++..||+.+.++. .|++.|......+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~lPsP 258 (731)
T PRK07560 179 KGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHLPNP 258 (731)
T ss_pred HHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhCCCh
Confidence 0 00 000011 112346778999988876 5666665422111
Q ss_pred h-----------------------hcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEee
Q psy1758 234 E-----------------------LKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSML 288 (1527)
Q Consensus 234 ~-----------------------~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~ 288 (1527)
. ...+++.|+.++|++...+++.|.+++++|++|+|++||.|.+.. ...+|..++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~ 338 (731)
T PRK07560 259 IEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVG 338 (731)
T ss_pred hhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEeheeh
Confidence 0 001234578899999999999999999999999999999997633 345777776
Q ss_pred ccC---CceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccce
Q psy1758 289 NEN---GKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVK 365 (1527)
Q Consensus 289 ~~~---g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (1527)
... ..++.++.+|+.+.|.|++.. ..|+++....... .+.. +.....+
T Consensus 339 ~~~g~~~~~v~~a~AGdIv~i~gl~~~-~~GdtL~~~~~~~------------------------~~~~----~~~~p~P 389 (731)
T PRK07560 339 IYMGPEREEVEEIPAGNIAAVTGLKDA-RAGETVVSVEDMT------------------------PFES----LKHISEP 389 (731)
T ss_pred hhhcCCCceeeeECCCCEEEEEccccc-ccCCEEeCCCccc------------------------cccc----cccCCCC
Confidence 543 467899999999999998766 5799875321100 0000 0011235
Q ss_pred eEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEE
Q psy1758 366 NLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVI 399 (1527)
Q Consensus 366 ~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv 399 (1527)
.+.+-|.+...+..+.|.++|.++..+...+.|-
T Consensus 390 v~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~ 423 (731)
T PRK07560 390 VVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVK 423 (731)
T ss_pred eEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEE
Confidence 6778899999999999999999997666666663
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-21 Score=218.10 Aligned_cols=178 Identities=22% Similarity=0.243 Sum_probs=140.2
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeE------------------------E
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNC------------------------S 979 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~------------------------~ 979 (1527)
+|+++||+++|||||+++|.. +.+..........+|.+..|.++|+|+..... .
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~--~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 78 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ--GELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEI 78 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCcccccccee
Confidence 488999999999999999985 34444333344678999999999999754432 2
Q ss_pred EEecCeEEEEEeCCCCCCchHHHHHHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCC-Chhh
Q psy1758 980 IEYNGTRINIIDTPGHADFGGEVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-RPEW 1056 (1527)
Q Consensus 980 ~~~~~~~iniiDTPGh~df~~ev~~~l~--~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a-~~~~ 1056 (1527)
++..++.++|+|||||.+|..++.+++. .+|++++|||+.+|+.+|++.++..+...++|+++|+||+|+.+. +..+
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~ 158 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQE 158 (224)
T ss_pred eeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHH
Confidence 3345789999999999999999999986 799999999999999999999999999999999999999998654 3556
Q ss_pred hHHHHHHHHhhhccc-------------------ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1057 VVDATFDLFDKLCAT-------------------EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1057 v~~~~~~~~~~l~~~-------------------~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
..+++.+.+...+.. ......|++++||.+|. |++.|+..| ..+|+|
T Consensus 159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~----------Gi~~L~~~L-~~lp~~ 224 (224)
T cd04165 159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGE----------GLDLLHAFL-NLLPLR 224 (224)
T ss_pred HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCcc----------CHHHHHHHH-HhcCCC
Confidence 666666665432211 11123599999999998 997777665 778764
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-20 Score=244.05 Aligned_cols=247 Identities=23% Similarity=0.178 Sum_probs=186.4
Q ss_pred CCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCe------------------EEEEEeCCCCC
Q psy1758 935 KTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT------------------RINIIDTPGHA 996 (1527)
Q Consensus 935 KTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~------------------~iniiDTPGh~ 996 (1527)
||||+++|.+..- ..+...|||.+...+.+.++.. .++|||||||.
T Consensus 474 KTtLLD~iR~t~v----------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe 537 (1049)
T PRK14845 474 NTTLLDKIRKTRV----------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE 537 (1049)
T ss_pred cccHHHHHhCCCc----------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH
Confidence 9999999965411 1233478888887777776521 28999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCC-CCCh--------------hhhHHHH
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS-NARP--------------EWVVDAT 1061 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~-~a~~--------------~~v~~~~ 1061 (1527)
+|.....++++.+|++++|+|+++|+++||..++..+...++|+++|+||+|+. +++. +++.+++
T Consensus 538 ~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el 617 (1049)
T PRK14845 538 AFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTEL 617 (1049)
T ss_pred HHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHH
Confidence 999988888999999999999999999999999999999999999999999985 4331 2233333
Q ss_pred HHH-------Hhhhccc--------ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC-----CCCCCCCCC
Q psy1758 1062 FDL-------FDKLCAT--------EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP-----VHKDNSNNP 1121 (1527)
Q Consensus 1062 ~~~-------~~~l~~~--------~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp-----~p~~~~~~p 1121 (1527)
... |.+.+.. +..-.+|++++||++|. |+++|+++|....+ ....+++.|
T Consensus 618 ~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGe----------GId~Ll~~l~~l~~~~l~~~L~~~~~~~ 687 (1049)
T PRK14845 618 EIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGE----------GIPELLMMVAGLAQKYLEERLKLNVEGY 687 (1049)
T ss_pred HHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCC----------CHHHHHHHHHHhhHHhhhhhhccCCCCc
Confidence 221 1122111 11235799999999998 99999988864432 234456789
Q ss_pred ceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEee--------cCceeEeeeeecCCEEE
Q psy1758 1122 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFK--------GLDRVLVNEALSGDIVL 1193 (1527)
Q Consensus 1122 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~--------g~~~~~v~~a~AGdIva 1193 (1527)
+++.|..++.+++.|.++.|.|.+|+|++||.|.+.+. ++ +...||..|.... +.+...++++.|+.-|-
T Consensus 688 ~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~-~~-~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vk 765 (1049)
T PRK14845 688 AKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGP-DD-VIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVK 765 (1049)
T ss_pred eEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccC-CC-cceEEEEEecCcccccccccccccccccccccCCCceE
Confidence 99999999999999999999999999999999999876 22 3456788776431 11345678888877776
Q ss_pred Ee--cceecccCCeeeCC
Q psy1758 1194 IT--GIEEICIGSTICDP 1209 (1527)
Q Consensus 1194 i~--gl~~~~iGdTi~~~ 1209 (1527)
|+ |++++..||.+.-.
T Consensus 766 i~a~gl~~~~aG~~~~v~ 783 (1049)
T PRK14845 766 IAAPGLEEVLAGSPIRIV 783 (1049)
T ss_pred EecCCccccCCCCeEEEe
Confidence 64 88888778887543
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=200.26 Aligned_cols=161 Identities=63% Similarity=0.917 Sum_probs=133.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC---CeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN---HGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~---~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
|+|+++|++|+|||||+++|....+.....+++|++.....+... +..++||||||++.|..++..++..+|++++|
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v 80 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILV 80 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEE
Confidence 579999999999999999999988877777789998887777775 66899999999999999999999999999999
Q ss_pred EeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccc-cccCCCCcEEEeeccCCCChhHHHHH
Q psy1758 147 VAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIP-EEYGGASPFISISAKTGVGINKLLEN 225 (1527)
Q Consensus 147 vda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~-~~~~~~~~v~~iSAktg~gI~eL~~~ 225 (1527)
+|++++...++.+.+..+...++|+++|+||+|+...+.......+....... +.++..++++++||++|.|+++|+++
T Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T cd01887 81 VAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEA 160 (168)
T ss_pred EECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHH
Confidence 99999888888888888888899999999999997654444433333222111 13444579999999999999999999
Q ss_pred HHHHH
Q psy1758 226 ISLQA 230 (1527)
Q Consensus 226 l~~~~ 230 (1527)
|....
T Consensus 161 l~~~~ 165 (168)
T cd01887 161 ILLLA 165 (168)
T ss_pred HHHhh
Confidence 97654
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-20 Score=206.36 Aligned_cols=236 Identities=28% Similarity=0.371 Sum_probs=181.9
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccc---cccccCCceeEEEEEEEEEeC--------------------C------eEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTN---VVFSEAGGITQHIGAYNVVTN--------------------H------GSI 118 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~---~~~~~~~giT~~~~~~~~~~~--------------------~------~~i 118 (1527)
...+|.++||++||||||..+|++-- +...-..|+|+.+++.....- + +.+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 45689999999999999999998743 333445688888776543210 0 258
Q ss_pred EEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC-CcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHHHHHHHhhhc
Q psy1758 119 TFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG-VMPQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQ 196 (1527)
Q Consensus 119 ~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g-~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~~~~~l~~~~ 196 (1527)
.|+|.||||-....+..++...|+++||++|++. .+|||.|++..+.-.++. +|++-||+|+...+......+.. ..
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qI-k~ 167 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQI-KE 167 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHH-HH
Confidence 8999999999999999999999999999999995 589999999999888886 89999999998743221111111 11
Q ss_pred ccccccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeec--------CCCceEEEEEeeccE
Q psy1758 197 VIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLD--------KGKGPVATVLIQSGT 268 (1527)
Q Consensus 197 ~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~--------~~~G~v~~~~v~~G~ 268 (1527)
+..-.+..+.|++|+||..+.||+.|+++|... +..+..+.+.|+..+|..++.. +-+|.|..+.+.+|.
T Consensus 168 FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~--IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~ 245 (415)
T COG5257 168 FVKGTVAENAPIIPISAQHKANIDALIEAIEKY--IPTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGV 245 (415)
T ss_pred HhcccccCCCceeeehhhhccCHHHHHHHHHHh--CCCCccCCCCCceEEEEeecccCCCCCCHHHccCceecceeeeee
Confidence 222234456799999999999999999999643 4556667788999999998764 457899999999999
Q ss_pred EEeccEEEe--c------------ceeeeEeEeeccCCceeeecCCCcceEec
Q psy1758 269 LRCSDIVVA--G------------ASYGRIRSMLNENGKNILEAGPSIPVEIQ 307 (1527)
Q Consensus 269 l~~gd~vv~--g------------~~~~kVr~i~~~~g~~v~~a~~~~~v~I~ 307 (1527)
+++||++.+ | +.+.+|.++ ...+..+++|.||--+.|.
T Consensus 246 l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl-~ag~~~~~ea~PGGLvgvG 297 (415)
T COG5257 246 LRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSL-QAGGEDVEEARPGGLVGVG 297 (415)
T ss_pred EecCCeEEecCCeEeecCCceEEEEeeEEEEEE-EeCCeeeeeccCCceEEEe
Confidence 999999876 2 113577777 4566789999999776663
|
|
| >KOG0461|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=206.09 Aligned_cols=236 Identities=26% Similarity=0.330 Sum_probs=188.3
Q ss_pred CCEEEEEecCCCChhHHHHHHHccc-------cccccCCceeEEEEEEEEEeCC---------eEEEEEeCCChhhHHHH
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTN-------VVFSEAGGITQHIGAYNVVTNH---------GSITFLDTPGHEAFTAM 132 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~-------~~~~~~~giT~~~~~~~~~~~~---------~~i~~iDTPG~e~f~~~ 132 (1527)
..++.++||+++|||||.++|.... ...+...|+|.|.+...+.... -+++|+|+|||......
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt 86 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT 86 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence 3689999999999999999996532 2455667999999987765432 25799999999999999
Q ss_pred HHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHH-HHH---hhhcccccccCCCCcE
Q psy1758 133 RARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIK-QDL---ISEQVIPEEYGGASPF 208 (1527)
Q Consensus 133 ~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~-~~l---~~~~~~~~~~~~~~~v 208 (1527)
..-+++..|.+++|+|+..|.++|+.|++-.....-...|||+||+|....+..... +.+ .........++++.|+
T Consensus 87 iiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI 166 (522)
T KOG0461|consen 87 IIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPI 166 (522)
T ss_pred HHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCce
Confidence 999999999999999999999999999998877777779999999998764322111 111 1122334456788999
Q ss_pred EEeeccCC----CChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecce--ee
Q psy1758 209 ISISAKTG----VGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGAS--YG 282 (1527)
Q Consensus 209 ~~iSAktg----~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~ 282 (1527)
+++||+.| ++|.+|.+.|... +-.++.+...|+...|...+..+|+|+|.++.+.+|.++.|+.|.+..- .-
T Consensus 167 ~~vsa~~G~~~~~~i~eL~e~l~s~--if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~r 244 (522)
T KOG0461|consen 167 VEVSAADGYFKEEMIQELKEALESR--IFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKR 244 (522)
T ss_pred eEEecCCCccchhHHHHHHHHHHHh--hcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeEEecCcEEeecccchhh
Confidence 99999999 7899988887643 4566778889999999999999999999999999999999999987543 34
Q ss_pred eEeEeeccCCceeeecCCCcceEec
Q psy1758 283 RIRSMLNENGKNILEAGPSIPVEIQ 307 (1527)
Q Consensus 283 kVr~i~~~~g~~v~~a~~~~~v~I~ 307 (1527)
||++|..++. ++.+|.+|+...+.
T Consensus 245 kVKslqmf~~-~vtsa~~GdR~g~c 268 (522)
T KOG0461|consen 245 KVKSLQMFKQ-RVTSAAAGDRAGFC 268 (522)
T ss_pred hhhhHHHHhh-hhhhhhcccceeee
Confidence 8999976664 67777777766553
|
|
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-20 Score=195.91 Aligned_cols=158 Identities=18% Similarity=0.202 Sum_probs=129.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|.++|+.|||||+|+.+|....+..++..+|.+|+....++.++. ++++|||+|||+|..+...+|+.|+++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 45678999999999999999999999999999999999999999999887 7899999999999999999999999999
Q ss_pred EEEeCCCC----CcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCc-EEEeeccCCCCh
Q psy1758 145 LVVAADDG----VMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASP-FISISAKTGVGI 219 (1527)
Q Consensus 145 lVvda~~g----~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~-v~~iSAktg~gI 219 (1527)
+|||.++. ...+|+..+......++|.++|+||+|+.+.......+. .. .... ...| ++++|||++.||
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a--~~--fa~~--~~~~~f~ETSAK~~~NV 160 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEA--QE--FADE--LGIPIFLETSAKDSTNV 160 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHH--HH--HHHh--cCCcceeecccCCccCH
Confidence 99999983 345677666666677899999999999976321111110 00 0111 1235 999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
++.|..|....
T Consensus 161 e~~F~~la~~l 171 (205)
T KOG0084|consen 161 EDAFLTLAKEL 171 (205)
T ss_pred HHHHHHHHHHH
Confidence 99999997543
|
|
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-20 Score=201.37 Aligned_cols=181 Identities=40% Similarity=0.552 Sum_probs=152.7
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
||+++|.+|+|||||+++|+..............+.++....+..+|+|+......+.+.+..+++|||||+.+|...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999886665555555556788888999999999988888899999999999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCC-CChhhhHHHHHHHHhhhccc-------cccc
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN-ARPEWVVDATFDLFDKLCAT-------EEQL 1075 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~-a~~~~v~~~~~~~~~~l~~~-------~~~~ 1075 (1527)
.+++.+|++++|+|+.++...+....+..+...++|+++|+||+|+.. .+.....+++.+.+...+.. ....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGL 160 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCC
Confidence 999999999999999999888888888888888999999999999975 44555666666655443321 0123
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
..|++++||++|+ |++++++.+.+.+|+|
T Consensus 161 ~~~v~~~Sa~~g~----------gi~~l~~~l~~~l~~~ 189 (189)
T cd00881 161 LVPIVPGSALTGI----------GVEELLEAIVEHLPPP 189 (189)
T ss_pred cceEEEEecccCc----------CHHHHHHHHHhhCCCC
Confidence 5789999999998 9999999999999865
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-20 Score=237.93 Aligned_cols=304 Identities=25% Similarity=0.297 Sum_probs=206.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc---------------cc-ccccCCceeEEEEEEE----EEeCCeEEEEEeCCChh
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT---------------NV-VFSEAGGITQHIGAYN----VVTNHGSITFLDTPGHE 127 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~---------------~~-~~~~~~giT~~~~~~~----~~~~~~~i~~iDTPG~e 127 (1527)
+-.+|+++||+|||||||+++|... ++ ......++|++..... +.+.+..++|||||||.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 3468999999999999999998642 11 1122256777655433 56677899999999999
Q ss_pred hHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHH----HHHHhh-------h-
Q psy1758 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRI----KQDLIS-------E- 195 (1527)
Q Consensus 128 ~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~----~~~l~~-------~- 195 (1527)
+|...+..+++.+|++++|+|+.+|+..++.+++..+...++|+++|+||+|+..++.... ...+.. .
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 177 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITEVNKLI 177 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHHHHhhh
Confidence 9999999999999999999999999999999999998888999999999999975432211 111100 0
Q ss_pred -cccccccC-------CCCcEEEeeccCC------------CCh----------------------hHHHHHHHHHHHHH
Q psy1758 196 -QVIPEEYG-------GASPFISISAKTG------------VGI----------------------NKLLENISLQAEIL 233 (1527)
Q Consensus 196 -~~~~~~~~-------~~~~v~~iSAktg------------~gI----------------------~eL~~~l~~~~~~~ 233 (1527)
......+. ...+....|++.+ .+. +.|++.|......+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~~~Lld~i~~~lPsP 257 (720)
T TIGR00490 178 KAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDMVIRHLPSP 257 (720)
T ss_pred hccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHhCCCh
Confidence 00000000 0011222333333 122 23344443211000
Q ss_pred -h----------------------hcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEee
Q psy1758 234 -E----------------------LKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSML 288 (1527)
Q Consensus 234 -~----------------------~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~ 288 (1527)
+ ...+++.|+.+.|++...+++.|.+++++|++|+|++||.|++.+ ...+|+.++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l~ 337 (720)
T TIGR00490 258 IEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVG 337 (720)
T ss_pred hhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEEE
Confidence 0 001224577899999999999999999999999999999997643 356787876
Q ss_pred ccC---CceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccce
Q psy1758 289 NEN---GKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVK 365 (1527)
Q Consensus 289 ~~~---g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (1527)
... ..++.++.+|+.+.|.|+++. ..||.+..-.+. + ..+.. ...-..+
T Consensus 338 ~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~GdtL~~~~~~-----~------------------~~~~~----~~~~~~P 389 (720)
T TIGR00490 338 VYMGPERVEVDEIPAGNIVAVIGLKDA-VAGETICTTVEN-----I------------------TPFES----IKHISEP 389 (720)
T ss_pred EeccCCccCccEECCCCEEEEECcccc-ccCceeecCCcc-----c------------------ccCcc----cccCCCc
Confidence 544 467899999999999999876 589988522110 0 00000 0011235
Q ss_pred eEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEE
Q psy1758 366 NLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVI 399 (1527)
Q Consensus 366 ~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv 399 (1527)
.+.+-|.+...+....+.++|..+..+...+.+-
T Consensus 390 v~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~ 423 (720)
T TIGR00490 390 VVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVE 423 (720)
T ss_pred eEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEE
Confidence 6778899999999999999999997666666663
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >KOG0465|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-20 Score=218.24 Aligned_cols=300 Identities=23% Similarity=0.250 Sum_probs=223.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc------------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV------------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAF 129 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~------------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f 129 (1527)
+-.+|.++.|.++|||||.+++..-.. ......|||+...+..+.|.+.++++||||||.+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 456799999999999999997643211 12233589999999999999999999999999999
Q ss_pred HHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcc------------
Q psy1758 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQV------------ 197 (1527)
Q Consensus 130 ~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~------------ 197 (1527)
.....++++..|++|+|+|+..|++.||...|++++..++|.|.++||+|...+++.+..+.+.....
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiPig~ 197 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIPIGS 197 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEccccc
Confidence 99999999999999999999999999999999999999999999999999987665444332211000
Q ss_pred ------------------------------cc--------------------------------c---------------
Q psy1758 198 ------------------------------IP--------------------------------E--------------- 200 (1527)
Q Consensus 198 ------------------------------~~--------------------------------~--------------- 200 (1527)
++ +
T Consensus 198 e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIRr~T 277 (721)
T KOG0465|consen 198 ESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIRRAT 277 (721)
T ss_pred cccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 00 0
Q ss_pred ccCCCCcEEEeeccCCCChhHHHHHHHHHH----HHHh--hc-------------CCCCCCCceEEEEEeecCCCceEEE
Q psy1758 201 EYGGASPFISISAKTGVGINKLLENISLQA----EILE--LK-------------APVTTPAKGVIIESRLDKGKGPVAT 261 (1527)
Q Consensus 201 ~~~~~~~v~~iSAktg~gI~eL~~~l~~~~----~~~~--~~-------------~~~~~p~~~~v~~~~~~~~~G~v~~ 261 (1527)
-.+.++|+++.||..+.||+.|+++++... +..+ .. .+...|+.++.++...++. |.+.+
T Consensus 278 i~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g~f-GqLTy 356 (721)
T KOG0465|consen 278 IKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLEEGRF-GQLTY 356 (721)
T ss_pred hhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEeeecCc-cceEE
Confidence 002478999999999999999999998542 1100 00 0112288899999998888 99999
Q ss_pred EEeeccEEEeccEEEecceeeeEe-----EeeccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhh
Q psy1758 262 VLIQSGTLRCSDIVVAGASYGRIR-----SMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQ 336 (1527)
Q Consensus 262 ~~v~~G~l~~gd~vv~g~~~~kVr-----~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~ 336 (1527)
++|++|+|+.||.+++..+.-|+| .|+....+++.++.+|+.+.+.|++. ..||.|..-++
T Consensus 357 vRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alfGidc--asGDTftd~~~------------ 422 (721)
T KOG0465|consen 357 VRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALFGIDC--ASGDTFTDKQN------------ 422 (721)
T ss_pred EEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeeeecccc--ccCceeccCcc------------
Confidence 999999999999999876654444 35556668899999999999999954 58997762211
Q ss_pred hchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeE
Q psy1758 337 GKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQV 398 (1527)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~i 398 (1527)
....+++++- ...-+.+-||..+--..++...+|..+..+...+++
T Consensus 423 -----------~~~~m~si~v-----PePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv 468 (721)
T KOG0465|consen 423 -----------LALSMESIHI-----PEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRV 468 (721)
T ss_pred -----------ccceeeeeec-----CCCeeEEEecccccccHHHHHHHHHhhcccCCceEE
Confidence 0111222211 113345557777777777777777777665544444
|
|
| >KOG2529|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.9e-21 Score=217.23 Aligned_cols=221 Identities=29% Similarity=0.430 Sum_probs=188.5
Q ss_pred ceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCC
Q psy1758 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 740 (1527)
Q Consensus 661 ~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~ 740 (1527)
...|+++++||++.+||++++|++++|...|.||.|||||.+||+|++|++++||++.-++...|+|.+.+. .|+++
T Consensus 66 ~~sgv~~i~kpa~pss~e~~swvk~iL~~ek~Gh~gTlDP~vtg~l~v~~~~~tr~~~s~~s~gk~yvg~~~---lt~~v 142 (395)
T KOG2529|consen 66 SRSGVINIDKPANPSSHEVVSWVKNILRVEKTGHSGTLDPEVTGCLIVCIDRATRLLKSQQSAGKEYVGIGK---LTPEV 142 (395)
T ss_pred hhcCceeccCCCCCchHHHHHHHHHHhhHHHhCCCCCCCccccceEEEEeecccccccchhccCcEEEEEEe---cCcch
Confidence 458999999999999999999999999999999999999999999999999999999999999999965554 46655
Q ss_pred CCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEe--CC
Q psy1758 741 DIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYT--IP 818 (1527)
Q Consensus 741 d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~--~~ 818 (1527)
+.. ..+.+.+....|.-.|.||--+| +.+..|...+|+.++++++ .+
T Consensus 143 ~~~--------------~k~~~~~e~l~g~l~~~~pl~~~-----------------~kr~~~v~~~y~s~~ie~d~~~~ 191 (395)
T KOG2529|consen 143 EDA--------------LKLHQKLEHLYGALFQRPPLISA-----------------VKRVLRVRTLYESKIIEYDRDYP 191 (395)
T ss_pred hhh--------------hhhccchhhhhhhhccCCchhhh-----------------ccceeEeechhhhhcccccccch
Confidence 443 44566777788999999999999 5678888889999999876 46
Q ss_pred eEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCcccccc-ccChhHHHhh------hhhh--hccccCccccc
Q psy1758 819 YLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDK-CLNIDTIIKY------SEYE--RISSLIPIDIL 889 (1527)
Q Consensus 819 ~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~-a~~l~~l~~~------~~~~--~~~~L~pie~~ 889 (1527)
...|-+.|..|||+|+++..+|..|+++++|.++||.+.|....++ .+++.+..+. .+.+ ......|++..
T Consensus 192 l~~f~~~~~~~t~~rt~~~~lg~ll~~g~k~~E~~r~r~~~~~E~~~~~t~~d~~~~q~~~d~~~d~~~~r~~~~~les~ 271 (395)
T KOG2529|consen 192 LLRFGVSCEAGTYKRTMCVHLGLLLGFGGKMQELRRVRSGICSEEDDMLTEHDEQDAQFEYDTERDESYLRRVKKPLESL 271 (395)
T ss_pred hccccccccccchHHHHHHhhhhHhhhcchhhhhhhcccccccccccccccccchhhhhhhccccCcceeeeeeeccccc
Confidence 7899999999999999999999999999999999999999998877 6887766432 1122 11346888999
Q ss_pred ccccceeeecccccceeccCcccccc
Q psy1758 890 LSSFGIIYLSDLLSKRFLHGQNLFLS 915 (1527)
Q Consensus 890 L~~lP~i~l~d~~~~~i~nG~~i~ls 915 (1527)
+.....+...+......+.|.++...
T Consensus 272 l~~~~~vv~kd~~v~~~cyg~k~~v~ 297 (395)
T KOG2529|consen 272 LTGYKRVVVKDSTVNAPCYGAKLLVP 297 (395)
T ss_pred cccceeeecccchhcCccccceeeec
Confidence 98999998888888899998887654
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=207.29 Aligned_cols=255 Identities=20% Similarity=0.276 Sum_probs=188.7
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHcccc----------------------ccccCCceeEEEEEEEEEeCCeEEEEEeC
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNV----------------------VFSEAGGITQHIGAYNVVTNHGSITFLDT 123 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~----------------------~~~~~~giT~~~~~~~~~~~~~~i~~iDT 123 (1527)
..|....+|+.||++|||||...|..-.. ......||++..+..+++++++.++++||
T Consensus 9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDT 88 (528)
T COG4108 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDT 88 (528)
T ss_pred HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCC
Confidence 34667899999999999999998742111 11223589999999999999999999999
Q ss_pred CChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc---cc
Q psy1758 124 PGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI---PE 200 (1527)
Q Consensus 124 PG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~---~~ 200 (1527)
|||++|+.-+.|.+..+|.+|.|+|+..|+.+||+.++.-|+..++|++-++||+|....++-+..+++.+...+ +-
T Consensus 89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pi 168 (528)
T COG4108 89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPI 168 (528)
T ss_pred CCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceecc
Confidence 999999999999999999999999999999999999999999999999999999999876554444433211100 00
Q ss_pred c-----------------------------------------------------------------------------cC
Q psy1758 201 E-----------------------------------------------------------------------------YG 203 (1527)
Q Consensus 201 ~-----------------------------------------------------------------------------~~ 203 (1527)
. .|
T Consensus 169 tWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G 248 (528)
T COG4108 169 TWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAG 248 (528)
T ss_pred cccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcC
Confidence 0 02
Q ss_pred CCCcEEEeeccCCCChhHHHHHHHHHHHHHhh-------cCCCCCCCceEEEEEeec---CCCceEEEEEeeccEEEecc
Q psy1758 204 GASPFISISAKTGVGINKLLENISLQAEILEL-------KAPVTTPAKGVIIESRLD---KGKGPVATVLIQSGTLRCSD 273 (1527)
Q Consensus 204 ~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~-------~~~~~~p~~~~v~~~~~~---~~~G~v~~~~v~~G~l~~gd 273 (1527)
...|+|..||.++.||+.+++.++..+..+.. ..+.+..+.|+|++.+.+ +.+-+++..+|-+|....|.
T Consensus 249 ~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~SGkferGM 328 (528)
T COG4108 249 ELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGM 328 (528)
T ss_pred CccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEeccccccCCc
Confidence 35799999999999999999999866532111 122344688999988753 56899999999999999999
Q ss_pred EEEeccee--eeEeE---eeccCCceeeecCCCcceEecCCCCCCCCCCeEEE
Q psy1758 274 IVVAGASY--GRIRS---MLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFV 321 (1527)
Q Consensus 274 ~vv~g~~~--~kVr~---i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~ 321 (1527)
.+.--.+. .++.. .+......+.+|.||+.+.+..-- .-..||.|..
T Consensus 329 kv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG-~~~IGDT~t~ 380 (528)
T COG4108 329 KVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHG-TIQIGDTFTE 380 (528)
T ss_pred eeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCC-ceeecceeec
Confidence 77542221 22222 223334567788888766553211 2256776653
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=212.43 Aligned_cols=225 Identities=23% Similarity=0.331 Sum_probs=167.4
Q ss_pred HHHHHHHHhCCCcc--CccccCCH--HHHHHHHHhcCC-------ceeecCCCCchhhhhhhcc-cCcccccc-cCCCEE
Q psy1758 6 SVVIKNLMKLGQMV--TINQVLDQ--ETAMILVEEMGH-------VAHASKLNDPESFLLNEYN-KNITAESL-VRAPIV 72 (1527)
Q Consensus 6 ~~~i~~l~~~g~~~--~~~~~l~~--~~~~~~a~~~g~-------~~~~~~~~~~~~~~~~~l~-~~~~~~~~-~r~~~V 72 (1527)
.++.++|+..+.++ .+|..-.. +....-.-.+|+ ..|..+..++.+.+...++ +....+.. ..+.+|
T Consensus 102 ~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~iki 181 (444)
T COG1160 102 EEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKI 181 (444)
T ss_pred HHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEE
Confidence 45778888776754 23433222 222222224443 2345566777777777763 22111212 367999
Q ss_pred EEEecCCCChhHHHHHHHccc-cccccCCceeEEEEEEEEEeCCeEEEEEeCCC----------hhhHHHHHH-hhcccc
Q psy1758 73 TIMGHVDHGKTSLLDYIRKTN-VVFSEAGGITQHIGAYNVVTNHGSITFLDTPG----------HEAFTAMRA-RGAKVT 140 (1527)
Q Consensus 73 ~IvG~~~~GKTSLl~~L~~~~-~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG----------~e~f~~~~~-~~~~~a 140 (1527)
+|+|.||+|||||+|+|.+.+ ..++..+|+|+|.....+++++.++.|+||+| +|.|...+. .++..|
T Consensus 182 aiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a 261 (444)
T COG1160 182 AIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERA 261 (444)
T ss_pred EEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhc
Confidence 999999999999999998876 68999999999999999999999999999999 566765554 566899
Q ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch---hHHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN---LDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 141 D~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~---~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
|++++|+|+++++..|+......+...+.++|+|+||||+.+.+ .+.....+... -.+-+..|++.+||++|.
T Consensus 262 ~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~----l~~l~~a~i~~iSA~~~~ 337 (444)
T COG1160 262 DVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRK----LPFLDFAPIVFISALTGQ 337 (444)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHH----hccccCCeEEEEEecCCC
Confidence 99999999999999999999999999999999999999997742 22333333321 223456799999999999
Q ss_pred ChhHHHHHHHHHHHHHh
Q psy1758 218 GINKLLENISLQAEILE 234 (1527)
Q Consensus 218 gI~eL~~~l~~~~~~~~ 234 (1527)
|+.+||+.+....+...
T Consensus 338 ~i~~l~~~i~~~~~~~~ 354 (444)
T COG1160 338 GLDKLFEAIKEIYECAT 354 (444)
T ss_pred ChHHHHHHHHHHHHHhc
Confidence 99999999986554433
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-19 Score=190.88 Aligned_cols=155 Identities=33% Similarity=0.531 Sum_probs=119.4
Q ss_pred EEEEEecCCCChhHHHHHHHccc---cccccCCceeEEEEEEEEEeC-CeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTN---VVFSEAGGITQHIGAYNVVTN-HGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~---~~~~~~~giT~~~~~~~~~~~-~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
+|+++|++|+|||||+++|.+.. +.....+++|++.....+.+. +..+.+|||||+++|...+..+++.+|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 68999999999999999998643 333445678888887777776 77999999999999998888889999999999
Q ss_pred EeCCCCCcHHHHHHHHHHHHcCC-CEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 147 VAADDGVMPQTREAIAHAKISGV-PLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 147 vda~~g~~~qt~e~i~~~~~~~v-piIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
+|++++..+++.+.+..+...+. |+++|+||+|+.+... .....++..... .......+++++||++|.|++++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~l~~ 159 (164)
T cd04171 82 VAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLA--GTFLADAPIFPVSAVTGEGIEELKE 159 (164)
T ss_pred EECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHH--hcCcCCCcEEEEeCCCCcCHHHHHH
Confidence 99999887888777766666666 8999999999976321 111222211110 1001246899999999999999999
Q ss_pred HHH
Q psy1758 225 NIS 227 (1527)
Q Consensus 225 ~l~ 227 (1527)
.+.
T Consensus 160 ~l~ 162 (164)
T cd04171 160 YLD 162 (164)
T ss_pred HHh
Confidence 874
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-19 Score=200.83 Aligned_cols=262 Identities=27% Similarity=0.322 Sum_probs=190.3
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHcccccccc--------------CCceeEEEEEEEEEeCC----------------
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSE--------------AGGITQHIGAYNVVTNH---------------- 115 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~--------------~~giT~~~~~~~~~~~~---------------- 115 (1527)
.+....|+.+||+|||||||+..|..+....+. ..|.|.++....+-+++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 344567999999999999999888654432221 23566666555443332
Q ss_pred -------eEEEEEeCCChhhHHHHHHhhc--cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh-
Q psy1758 116 -------GSITFLDTPGHEAFTAMRARGA--KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL- 185 (1527)
Q Consensus 116 -------~~i~~iDTPG~e~f~~~~~~~~--~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~- 185 (1527)
+-+.|+||-|||.|.....+++ +..|..+||+.|++|++.-|+|++..+...+.|+|++++|+|+.+.+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr~ 273 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDRF 273 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHHHH
Confidence 3478999999999999999988 788999999999999999999999999999999999999999976432
Q ss_pred HHHHHHHh----hhcccc---------------cccC-CCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCce
Q psy1758 186 DRIKQDLI----SEQVIP---------------EEYG-GASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKG 245 (1527)
Q Consensus 186 ~~~~~~l~----~~~~~~---------------~~~~-~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~ 245 (1527)
..+.+++. .....+ ...+ +.+|+|.+|+.||.|++-|.+.+..+..- .......|+..
T Consensus 274 ~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp~r--r~~~d~g~flm 351 (527)
T COG5258 274 QGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLPKR--RRWDDEGPFLM 351 (527)
T ss_pred HHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhCCcc--cccCCCCCeEE
Confidence 12222211 111110 0112 35799999999999999887776533211 02244678999
Q ss_pred EEEEEeecCCCceEEEEEeeccEEEeccEEEecce------eeeEeEeeccCCceeeecCCCcceEe--cCCCCC-CCCC
Q psy1758 246 VIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGAS------YGRIRSMLNENGKNILEAGPSIPVEI--QGLTKV-PFSG 316 (1527)
Q Consensus 246 ~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~------~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~-~~~G 316 (1527)
+|.+.+...|.|+|+.+.|.+|.|+.||.+++||. ..+|++|. .+...+.+|.+|..+.+ .|..+- -..|
T Consensus 352 YId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIe-mh~~rvdsa~aG~iig~Al~gv~~e~lerG 430 (527)
T COG5258 352 YIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIE-MHHYRVDSAKAGSIIGIALKGVEKEELERG 430 (527)
T ss_pred EEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEE-EeeEEeccccCCcEEEEEecccCHHHHhcc
Confidence 99999999999999999999999999999999975 35899995 45567899999876654 455542 1577
Q ss_pred CeEEEeCChhHHHH
Q psy1758 317 EELFVILNEKKARE 330 (1527)
Q Consensus 317 ~~~~~~~~e~~a~~ 330 (1527)
.++..=...+..++
T Consensus 431 MVl~~~~~pkaVre 444 (527)
T COG5258 431 MVLSAGADPKAVRE 444 (527)
T ss_pred eEecCCCCchhhhe
Confidence 65543224444443
|
|
| >KOG0463|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-19 Score=201.21 Aligned_cols=271 Identities=23% Similarity=0.300 Sum_probs=206.2
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeE-------------------EEEec
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNC-------------------SIEYN 983 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~-------------------~~~~~ 983 (1527)
.+||++|.+|+|||||+..|++. .+........+-+-.+..|.|.|-|-...+- +++|-
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHg--eLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHG--ELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred EEEEEEecccCCcceeEeeeeec--ccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 46999999999999999999743 3322211122333456666676666443332 33441
Q ss_pred ------CeEEEEEeCCCCCCchHHHHHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-h
Q psy1758 984 ------GTRINIIDTPGHADFGGEVERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-P 1054 (1527)
Q Consensus 984 ------~~~iniiDTPGh~df~~ev~~~l--~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~ 1054 (1527)
-..|++||.+||+.|...+.-++ .+.|...|+|-|+.|+...|++++.+|+.+.+|+++|++|||...++ .
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANiL 291 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANIL 291 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHHHH
Confidence 24689999999999988877776 77899999999999999999999999999999999999999998776 3
Q ss_pred hhhHHHHHHHHhhhccccc-------------------ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCC
Q psy1758 1055 EWVVDATFDLFDKLCATEE-------------------QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 1115 (1527)
Q Consensus 1055 ~~v~~~~~~~~~~l~~~~~-------------------~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 1115 (1527)
++...-+..++..-++... ..-+|+|.+|..+|. ++ +||..+++.++...
T Consensus 292 qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~----------NL-~LLkmFLNlls~R~ 360 (641)
T KOG0463|consen 292 QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGT----------NL-PLLKMFLNLLSLRR 360 (641)
T ss_pred HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCC----------Ch-HHHHHHHhhcCccc
Confidence 4445555555443222211 123789999999997 65 78888888887543
Q ss_pred -CCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEE-
Q psy1758 1116 -DNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL- 1193 (1527)
Q Consensus 1116 -~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIva- 1193 (1527)
...+.|..++|.++++.|++|.++.|...+|+|+.+|.+.+.|...|......|++|. .+|-++..+..|+...
T Consensus 361 ~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIH----RKRMpV~~VrcGQtASF 436 (641)
T KOG0463|consen 361 QLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIH----RKRMPVGIVRCGQTASF 436 (641)
T ss_pred ccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhh----hccccceEEeccchhhh
Confidence 4677899999999999999999999999999999999999987755655556677663 5678999999999874
Q ss_pred -Eecce--ecccCCeeeCCC
Q psy1758 1194 -ITGIE--EICIGSTICDPS 1210 (1527)
Q Consensus 1194 -i~gl~--~~~iGdTi~~~~ 1210 (1527)
+.+++ +++.|.++.++.
T Consensus 437 ALKKIkr~~vRKGMVmVsp~ 456 (641)
T KOG0463|consen 437 ALKKIKRKDVRKGMVMVSPK 456 (641)
T ss_pred HhhhcchhhhhcceEEecCC
Confidence 44554 677899988764
|
|
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-19 Score=184.72 Aligned_cols=158 Identities=21% Similarity=0.253 Sum_probs=125.3
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEE
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~ 143 (1527)
..+..+|+++|+.+||||||+.++..+.|...+.++|.+|+....+.+.++ ++++|||+|||+|..+...|++.+.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 345589999999999999999999999999999999999999999888876 788999999999999999999999999
Q ss_pred EEEEeCCCC-CcHHHHHHHHHHHH---c-CCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 144 VLVVAADDG-VMPQTREAIAHAKI---S-GVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 144 IlVvda~~g-~~~qt~e~i~~~~~---~-~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
|+|||.++. ...++..++..+.. . ++-+++|+||.||.+...-...+ ......+++ +.|+++||+.|.|
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eE----g~~kAkel~--a~f~etsak~g~N 172 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEE----GERKAKELN--AEFIETSAKAGEN 172 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHH----HHHHHHHhC--cEEEEecccCCCC
Confidence 999999983 34445555554443 3 24588999999998732111111 111122232 4799999999999
Q ss_pred hhHHHHHHHHH
Q psy1758 219 INKLLENISLQ 229 (1527)
Q Consensus 219 I~eL~~~l~~~ 229 (1527)
|.+||..|...
T Consensus 173 Vk~lFrrIaa~ 183 (221)
T KOG0094|consen 173 VKQLFRRIAAA 183 (221)
T ss_pred HHHHHHHHHHh
Confidence 99999998643
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-19 Score=194.94 Aligned_cols=151 Identities=32% Similarity=0.397 Sum_probs=118.6
Q ss_pred CEEEEEecCCCChhHHHHHHHcccc----------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHH
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNV----------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMR 133 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~----------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~ 133 (1527)
.+|+++||+|||||||+++|+.... ......|+|++.....+++++.+++|+|||||.+|...+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~ 82 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNM 82 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHH
Confidence 5799999999999999999975310 122357999999988888888999999999999999999
Q ss_pred HhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEE
Q psy1758 134 ARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 134 ~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
.+++..+|++++|+|+.+++.+++.+++..+...++| +|+|+||+|+..... +....++.............+|+++
T Consensus 83 ~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iip 162 (195)
T cd01884 83 ITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVR 162 (195)
T ss_pred HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEE
Confidence 9999999999999999999999999999999999998 789999999964211 1122222221111000123579999
Q ss_pred eeccCCCChh
Q psy1758 211 ISAKTGVGIN 220 (1527)
Q Consensus 211 iSAktg~gI~ 220 (1527)
+||++|.|+.
T Consensus 163 iSa~~g~n~~ 172 (195)
T cd01884 163 GSALKALEGD 172 (195)
T ss_pred eeCccccCCC
Confidence 9999999864
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >KOG0458|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=206.73 Aligned_cols=251 Identities=24% Similarity=0.285 Sum_probs=188.6
Q ss_pred CCEEEEEecCCCChhHHHHHHHccc----------------------c---------ccccCCceeEEEEEEEEEeCCeE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTN----------------------V---------VFSEAGGITQHIGAYNVVTNHGS 117 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~----------------------~---------~~~~~~giT~~~~~~~~~~~~~~ 117 (1527)
....+++||+++|||||+.+|...- | ......|+|.++....++...+.
T Consensus 177 ~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~~ 256 (603)
T KOG0458|consen 177 HLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSKI 256 (603)
T ss_pred ceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCcee
Confidence 4578999999999999998874321 1 12234599999999999999999
Q ss_pred EEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCC-------cHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHHHH
Q psy1758 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-------MPQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIK 189 (1527)
Q Consensus 118 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-------~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~~~ 189 (1527)
++++|+|||.+|...+..++..||+++||+|++.+. ..||+|+...++.+|+. +||++||+|+.+++.+++.
T Consensus 257 ~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF~ 336 (603)
T KOG0458|consen 257 VTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDRFE 336 (603)
T ss_pred EEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHHHH
Confidence 999999999999999999999999999999999743 46999999999999987 9999999999998877765
Q ss_pred HHHhhhcccc-cc--cC-CCCcEEEeeccCCCChhHH------HHHHH---HHHH---HHhhcCCCCCCCceEEEEEeec
Q psy1758 190 QDLISEQVIP-EE--YG-GASPFISISAKTGVGINKL------LENIS---LQAE---ILELKAPVTTPAKGVIIESRLD 253 (1527)
Q Consensus 190 ~~l~~~~~~~-~~--~~-~~~~v~~iSAktg~gI~eL------~~~l~---~~~~---~~~~~~~~~~p~~~~v~~~~~~ 253 (1527)
........+. +. |. ..+.|+|||+.+|+|+... .+|-- .+.. ......+...|++..|.+.+..
T Consensus 337 eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ltIsdi~~~ 416 (603)
T KOG0458|consen 337 EIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLRLTISDIYPL 416 (603)
T ss_pred HHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCcccCCeEEEhhheeec
Confidence 4332222221 11 21 3468999999999998643 33221 1111 1122334566999999999999
Q ss_pred CCCceEEEEEeeccEEEeccEEEeccee--eeEeEeeccCCceeeecCCCcceEe--cCCC-CCCCCCCeEE
Q psy1758 254 KGKGPVATVLIQSGTLRCSDIVVAGASY--GRIRSMLNENGKNILEAGPSIPVEI--QGLT-KVPFSGEELF 320 (1527)
Q Consensus 254 ~~~G~v~~~~v~~G~l~~gd~vv~g~~~--~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~-~~~~~G~~~~ 320 (1527)
++.|..++|+|.+|.|..||.|++++.+ +.|+.+... ..+...|-+|+-|.+ .|+. ..-..|+++.
T Consensus 417 ~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~-~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~ 487 (603)
T KOG0458|consen 417 PSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSN-DEPKTWAVAGDNVSLKLPGILPNLVQVGDIAD 487 (603)
T ss_pred CCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecC-CCcceeEeeCCEEEEecCccChhhcccceeee
Confidence 9999999999999999999999997764 799999665 345555555655544 4422 2225677554
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=188.59 Aligned_cols=153 Identities=31% Similarity=0.401 Sum_probs=115.5
Q ss_pred EEEEEecCCCChhHHHHHHHccccc---------------cccCCceeEEEEEEEEEe-----CCeEEEEEeCCChhhHH
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVV---------------FSEAGGITQHIGAYNVVT-----NHGSITFLDTPGHEAFT 130 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~---------------~~~~~giT~~~~~~~~~~-----~~~~i~~iDTPG~e~f~ 130 (1527)
+|+++|++|||||||+++|.+.... .....|+|.+.....+.+ .+..++|||||||++|.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 6999999999999999999874211 111235666555444433 34578899999999999
Q ss_pred HHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEE
Q psy1758 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
.++.++++.+|++|+|+|++++...++.+.+..+...++|+++|+||+|+.+.........+..... . ...++++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~----~-~~~~~~~ 156 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLG----L-DPSEAIL 156 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhC----C-CcccEEE
Confidence 9999999999999999999998888888877777778899999999999865433322233322111 1 1135899
Q ss_pred eeccCCCChhHHHHHHHH
Q psy1758 211 ISAKTGVGINKLLENISL 228 (1527)
Q Consensus 211 iSAktg~gI~eL~~~l~~ 228 (1527)
+||++|.|+++|++.|..
T Consensus 157 ~Sa~~g~gi~~l~~~l~~ 174 (179)
T cd01890 157 VSAKTGLGVEDLLEAIVE 174 (179)
T ss_pred eeccCCCCHHHHHHHHHh
Confidence 999999999999999964
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=191.95 Aligned_cols=160 Identities=31% Similarity=0.430 Sum_probs=121.4
Q ss_pred CEEEEEecCCCChhHHHHHHHcc-------ccccccCCceeEEEEEEEEEeC--------------CeEEEEEeCCChhh
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKT-------NVVFSEAGGITQHIGAYNVVTN--------------HGSITFLDTPGHEA 128 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~-------~~~~~~~~giT~~~~~~~~~~~--------------~~~i~~iDTPG~e~ 128 (1527)
.+|+++||+|||||||+++|... .......+|+|++.....+.+. +..++|||||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 36999999999999999999872 2234456688988887766665 56899999999999
Q ss_pred HHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch-hHHHHHHHhhhc--ccccccCCC
Q psy1758 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN-LDRIKQDLISEQ--VIPEEYGGA 205 (1527)
Q Consensus 129 f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~--~~~~~~~~~ 205 (1527)
|......+++.+|++++|+|++++...++.+.+..+...+.|+++++||+|+.... ......++.... .........
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 160 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKN 160 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 88888788889999999999999888888777776666789999999999997432 222222222110 000000124
Q ss_pred CcEEEeeccCCCChhHHHHHHHHH
Q psy1758 206 SPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 206 ~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
++++++||++|.|+++|++.|..+
T Consensus 161 ~~vi~iSa~~g~gi~~L~~~l~~~ 184 (192)
T cd01889 161 SPIIPVSAKPGGGEAELGKDLNNL 184 (192)
T ss_pred CCEEEEeccCCCCHHHHHHHHHhc
Confidence 689999999999999999999754
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=221.03 Aligned_cols=303 Identities=18% Similarity=0.198 Sum_probs=198.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc----------------ccccCCceeEEEEEEEEEeC----------------C
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV----------------VFSEAGGITQHIGAYNVVTN----------------H 115 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~----------------~~~~~~giT~~~~~~~~~~~----------------~ 115 (1527)
+-.+|+|+||+|||||||+++|..... ......|+|.+.....+.|. +
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 345799999999999999999865431 11223477877766666653 5
Q ss_pred eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCC-------c----ch
Q psy1758 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL-------D----IN 184 (1527)
Q Consensus 116 ~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~-------~----~~ 184 (1527)
..++|+|||||.+|...+.++++.+|++|+|+|+.+|+..||..+|+++...++|+|+++||+|+. . ++
T Consensus 98 ~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~~~~~~ 177 (843)
T PLN00116 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 177 (843)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999998 2 34
Q ss_pred hHHHHHHHh--------hhccc--ccccCCCCcEEEeeccCC--------------------------------------
Q psy1758 185 LDRIKQDLI--------SEQVI--PEEYGGASPFISISAKTG-------------------------------------- 216 (1527)
Q Consensus 185 ~~~~~~~l~--------~~~~~--~~~~~~~~~v~~iSAktg-------------------------------------- 216 (1527)
..++..++. ..... ....++ .++..|+..|
T Consensus 178 ~~~vi~~in~~~~~~~~~~~~~~~~~P~~~--nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~~~ 255 (843)
T PLN00116 178 FSRVIENANVIMATYEDPLLGDVQVYPEKG--TVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATK 255 (843)
T ss_pred HHHHHHHHHHHHHhccccccCceEEccCCC--eeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCCCc
Confidence 444444443 10000 000000 1111122111
Q ss_pred --------C-------------ChhHHHHHHHH--------HHHH-----------------------------------
Q psy1758 217 --------V-------------GINKLLENISL--------QAEI----------------------------------- 232 (1527)
Q Consensus 217 --------~-------------gI~eL~~~l~~--------~~~~----------------------------------- 232 (1527)
. -+.+|++.++. ..+.
T Consensus 256 ~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~~s~~Lld~ 335 (843)
T PLN00116 256 KWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLPASDALLEM 335 (843)
T ss_pred eEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcCChHHHHHH
Confidence 0 00011111110 0000
Q ss_pred --HhhcC----------------------------CCCCCCceEEEEEeecCCCce-EEEEEeeccEEEeccEEEe-cce
Q psy1758 233 --LELKA----------------------------PVTTPAKGVIIESRLDKGKGP-VATVLIQSGTLRCSDIVVA-GAS 280 (1527)
Q Consensus 233 --~~~~~----------------------------~~~~p~~~~v~~~~~~~~~G~-v~~~~v~~G~l~~gd~vv~-g~~ 280 (1527)
...+. +++.|..++|++...++..|. +++++|++|+|+.||.|++ |+.
T Consensus 336 i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~~~n 415 (843)
T PLN00116 336 IIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIMGPN 415 (843)
T ss_pred HHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEeCCC
Confidence 00001 112467788999988887787 9999999999999999962 321
Q ss_pred -----e-----eeE---eEeeccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHH
Q psy1758 281 -----Y-----GRI---RSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQ 347 (1527)
Q Consensus 281 -----~-----~kV---r~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~ 347 (1527)
. ++| ..+......++.++.+|+.+.|.|++.....|+.+....+. ..
T Consensus 416 ~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~-~~------------------- 475 (843)
T PLN00116 416 YVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEV-DA------------------- 475 (843)
T ss_pred CCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCccc-CC-------------------
Confidence 1 244 44444445778999999999999998764558877421100 00
Q ss_pred hhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeE
Q psy1758 348 KLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQV 398 (1527)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~i 398 (1527)
..+.. +.-.....+.+-|.+...+..+.+.++|..+..+...+.+
T Consensus 476 --~~l~~----~~~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v 520 (843)
T PLN00116 476 --HPIKA----MKFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQC 520 (843)
T ss_pred --ccccc----cccCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEE
Confidence 00000 0000134577889999999999999999999766655654
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.5e-19 Score=186.72 Aligned_cols=158 Identities=34% Similarity=0.391 Sum_probs=125.3
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec-CeEEEEEeCCCCCCchHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-GTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-~~~iniiDTPGh~df~~ev 1002 (1527)
+|+++|++|+|||||+++|+... .+....+..+|+|+......+.+. ++.+++|||||+.+|...+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~-------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 68 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE-------------TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNM 68 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc-------------cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHH
Confidence 79999999999999999997531 122334566789998888888887 8899999999999999988
Q ss_pred HHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCC-ccEEEEeccCCCCCC-hhhhHHHHHHHHhhhcccccccCCcEE
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF-KPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCATEEQLDFPVI 1080 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~gl-p~IvviNKiD~~~a~-~~~v~~~~~~~~~~l~~~~~~~~~pvi 1080 (1527)
..+++.+|++++|+|+++++.+++...+..+...+. |+++|+||+|+.+.. .....+++.+.+.... ...+|++
T Consensus 69 ~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 144 (164)
T cd04171 69 LAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF----LADAPIF 144 (164)
T ss_pred HhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC----cCCCcEE
Confidence 999999999999999999998999888877777776 889999999997542 2233444444443211 1246899
Q ss_pred EeccccCCcCCCcccccCCChhHHHHHH
Q psy1758 1081 YTSALHGYANENSKARQGNMIPLFEAIL 1108 (1527)
Q Consensus 1081 ~~SA~~g~~~~~~~~~~~gi~~Ll~~i~ 1108 (1527)
++||++|. |++++++.+.
T Consensus 145 ~~Sa~~~~----------~v~~l~~~l~ 162 (164)
T cd04171 145 PVSAVTGE----------GIEELKEYLD 162 (164)
T ss_pred EEeCCCCc----------CHHHHHHHHh
Confidence 99999998 9999998874
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-19 Score=185.71 Aligned_cols=157 Identities=20% Similarity=0.243 Sum_probs=120.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|..+||||||+-++..+.|.....++|...+....+..++. ++.+|||+|+|+|.++...|++.|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35679999999999999999999999998888888888887777777774 6779999999999999999999999999
Q ss_pred EEEeCCCCCc-HHHHHHHHHHHHcCCC---EEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 145 LVVAADDGVM-PQTREAIAHAKISGVP---LIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 145 lVvda~~g~~-~qt~e~i~~~~~~~vp---iIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|||+++.-. .+...++..+....-| +.+|+||+|+.+.......+. ....+ .....||++|||||.||+
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea----~~yAe--~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEA----QAYAE--SQGLLFFETSAKTGENVN 156 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHH----HHHHH--hcCCEEEEEecccccCHH
Confidence 9999998443 2334444555443334 667999999976211111110 00011 123589999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
++|..|...
T Consensus 157 ~if~~Ia~~ 165 (200)
T KOG0092|consen 157 EIFQAIAEK 165 (200)
T ss_pred HHHHHHHHh
Confidence 999999754
|
|
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-19 Score=181.66 Aligned_cols=160 Identities=22% Similarity=0.259 Sum_probs=124.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
...+|.++|++|||||||++++.+..|...+..+|..++....+..+++ .+++|||+|||+|.++....++.||++++
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvl 87 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVL 87 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEE
Confidence 4578999999999999999999999999899999999998888888876 57789999999999999999999999999
Q ss_pred EEeCCCCCcHHHHHHH-----HHHHH---cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 146 VVAADDGVMPQTREAI-----AHAKI---SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 146 Vvda~~g~~~qt~e~i-----~~~~~---~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
|+|+++.-.-...+.| .++.. ..-|+||++||+|+.......+... ....+... .+++|+|++|||.+.
T Consensus 88 vydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~--~Aq~WC~s-~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 88 VYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEK--KAQTWCKS-KGNIPYFETSAKEAT 164 (210)
T ss_pred EeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHH--HHHHHHHh-cCCceeEEecccccc
Confidence 9999984333333333 33321 2468999999999966321111111 11112222 357899999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
||++.|+.+...+
T Consensus 165 NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 165 NVDEAFEEIARRA 177 (210)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999998665
|
|
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-18 Score=190.81 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=116.2
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
.|+++|..|+|||||+.++....+...+.++++.++....+..++. .+.||||||+++|..++..+++.+|++|+|||
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD 81 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD 81 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence 5899999999999999999999988777778887877767777764 67899999999999999999999999999999
Q ss_pred CCCCCcHHH----HHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 149 ADDGVMPQT----REAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 149 a~~g~~~qt----~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
+++....+. .+.+......++|+++|+||+|+..... +....... ..... ...+++++||++|.||+++|+
T Consensus 82 vtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~--v~~~~~~~--~a~~~-~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 82 ITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDRE--ISRQQGEK--FAQQI-TGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccc--cCHHHHHH--HHHhc-CCCEEEEecCCCCCCHHHHHH
Confidence 999543333 3333322234689999999999864211 11111000 01111 125799999999999999999
Q ss_pred HHHHH
Q psy1758 225 NISLQ 229 (1527)
Q Consensus 225 ~l~~~ 229 (1527)
+++..
T Consensus 157 ~l~~~ 161 (202)
T cd04120 157 KLVDD 161 (202)
T ss_pred HHHHH
Confidence 99854
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-18 Score=183.04 Aligned_cols=155 Identities=19% Similarity=0.160 Sum_probs=127.8
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|+++||||+|+.++....|..+...++.+|+....+..++. ++++|||+|||+|..+...|++.|++++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~ 89 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIL 89 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeE
Confidence 45678999999999999999999999999999999999999999998887 6789999999999999999999999999
Q ss_pred EEEeCCCCCc----HHHHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 145 LVVAADDGVM----PQTREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 145 lVvda~~g~~----~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
||||.++... ..|++.+......++|+++|+||+|+..... .+.-+.+ ..++ .++|+++|||+|.|
T Consensus 90 LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~l------A~e~--G~~F~EtSAk~~~N 161 (207)
T KOG0078|consen 90 LVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEAL------AREY--GIKFFETSAKTNFN 161 (207)
T ss_pred EEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHH------HHHh--CCeEEEccccCCCC
Confidence 9999998432 3366666666667899999999999976211 1111112 2223 36899999999999
Q ss_pred hhHHHHHHHHH
Q psy1758 219 INKLLENISLQ 229 (1527)
Q Consensus 219 I~eL~~~l~~~ 229 (1527)
|++.|-.|+..
T Consensus 162 I~eaF~~La~~ 172 (207)
T KOG0078|consen 162 IEEAFLSLARD 172 (207)
T ss_pred HHHHHHHHHHH
Confidence 99999999743
|
|
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-18 Score=189.19 Aligned_cols=156 Identities=32% Similarity=0.390 Sum_probs=119.3
Q ss_pred CEEEEEecCCCChhHHHHHHHc--cccccc--------------cCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHH
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRK--TNVVFS--------------EAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMR 133 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~--~~~~~~--------------~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~ 133 (1527)
.+|+++|++|+|||||+++|.. ..+... ...|+|.+.....+.+++..++|||||||++|..++
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4799999999999999999986 333222 225777777777788888899999999999999999
Q ss_pred HhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhc-cccccc-CCCCcEEEe
Q psy1758 134 ARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQ-VIPEEY-GGASPFISI 211 (1527)
Q Consensus 134 ~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~-~~~~~~-~~~~~v~~i 211 (1527)
..+++.+|++++|+|++++..+++..++..+...++|+++|+||+|+..........++.... .....+ ...++++++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~ 162 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYA 162 (194)
T ss_pred HHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEe
Confidence 999999999999999999888888777777777899999999999997644433333322211 000011 124689999
Q ss_pred eccCCCChhHHHHH
Q psy1758 212 SAKTGVGINKLLEN 225 (1527)
Q Consensus 212 SAktg~gI~eL~~~ 225 (1527)
||++|.|+.++-+.
T Consensus 163 Sa~~g~~~~~~~~~ 176 (194)
T cd01891 163 SAKNGWASLNLEDP 176 (194)
T ss_pred ehhccccccccccc
Confidence 99999988665433
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=182.08 Aligned_cols=147 Identities=21% Similarity=0.322 Sum_probs=112.5
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhh------HHHHHHhhc--cccC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA------FTAMRARGA--KVTD 141 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~------f~~~~~~~~--~~aD 141 (1527)
++|+++|.||+|||||+|+|++.....+..||+|.+.....+.+.+..+.|+||||... -......++ ...|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 47999999999999999999999999999999999999999999999999999999311 122233333 6799
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHH-HHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 142 IVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRI-KQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 142 ~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~-~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
++++|+|++. ..+......++...++|+++|+||+|+.......+ ...+.+ .+ .+|++++||++|.|++
T Consensus 81 ~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~------~L--g~pvi~~sa~~~~g~~ 150 (156)
T PF02421_consen 81 LIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSE------RL--GVPVIPVSARTGEGID 150 (156)
T ss_dssp EEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHH------HH--TS-EEEEBTTTTBTHH
T ss_pred EEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHH------Hh--CCCEEEEEeCCCcCHH
Confidence 9999999997 56667777888899999999999999864321111 111111 11 2699999999999999
Q ss_pred HHHHHH
Q psy1758 221 KLLENI 226 (1527)
Q Consensus 221 eL~~~l 226 (1527)
+|++.|
T Consensus 151 ~L~~~I 156 (156)
T PF02421_consen 151 ELKDAI 156 (156)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-18 Score=192.09 Aligned_cols=151 Identities=30% Similarity=0.445 Sum_probs=116.4
Q ss_pred EEEEEecCCCChhHHHHHHHccccc-c------------------------------ccCCceeEEEEEEEEEeCCeEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVV-F------------------------------SEAGGITQHIGAYNVVTNHGSIT 119 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~-~------------------------------~~~~giT~~~~~~~~~~~~~~i~ 119 (1527)
+|+++||+|+|||||+++|...... . ...+|+|++.....+.+++.+++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 4899999999999999998653321 1 11268999999999999999999
Q ss_pred EEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHH---HHHHHhhh
Q psy1758 120 FLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINLDR---IKQDLISE 195 (1527)
Q Consensus 120 ~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~---~~~~l~~~ 195 (1527)
|||||||++|...+..+++.+|++++|+|++++...++.+.+..+...+.| +|+|+||+|+...+... ...++..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~- 159 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLA- 159 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHH-
Confidence 999999999998888889999999999999999988888888877777765 78899999997533221 1222211
Q ss_pred cccccccC-CCCcEEEeeccCCCChhHHHH
Q psy1758 196 QVIPEEYG-GASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 196 ~~~~~~~~-~~~~v~~iSAktg~gI~eL~~ 224 (1527)
....++ ...+++++||++|.|+++...
T Consensus 160 --~~~~~~~~~~~ii~iSA~~g~ni~~~~~ 187 (208)
T cd04166 160 --FAAKLGIEDITFIPISALDGDNVVSRSE 187 (208)
T ss_pred --HHHHcCCCCceEEEEeCCCCCCCccCCC
Confidence 111122 235799999999999986543
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.2e-18 Score=210.39 Aligned_cols=161 Identities=23% Similarity=0.358 Sum_probs=129.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCC----------hhhHHHHHH-
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPG----------HEAFTAMRA- 134 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG----------~e~f~~~~~- 134 (1527)
...++|+++|++|+|||||+++|.+... ..++.+|+|++.....+.+++..+.|||||| ++.|..++.
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 4578999999999999999999998874 5678899999988888888999999999999 466666654
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHH-HHHHHhhhcccccccCCCCcEEEeec
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR-IKQDLISEQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~~~~v~~iSA 213 (1527)
.+++.+|++++|+|++++...+....+..+...++|+|+|+||+|+.+.+... ....+.. ... ....+|++++||
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~-~l~---~~~~~~~~~~SA 364 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDR-ELA---QVPWAPRVNISA 364 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHH-hcc---cCCCCCEEEEEC
Confidence 45789999999999999999999888888888899999999999997532211 1111111 111 112368999999
Q ss_pred cCCCChhHHHHHHHHHHH
Q psy1758 214 KTGVGINKLLENISLQAE 231 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~~~ 231 (1527)
++|.|++++|+.+....+
T Consensus 365 k~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 365 KTGRAVDKLVPALETALE 382 (472)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999986554
|
|
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=178.66 Aligned_cols=151 Identities=20% Similarity=0.229 Sum_probs=111.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||++++....+.....+.+..++....+..++. .+.+|||||++.|..++..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 47999999999999999999988876665555555544444444544 6889999999999999999999999999999
Q ss_pred eCCCCCcHHHHH-HHHHHHH--cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 148 AADDGVMPQTRE-AIAHAKI--SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 148 da~~g~~~qt~e-~i~~~~~--~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
|+++....+..+ ++..+.. .+.|+++|+||+|+......+ ...+ ...+ .++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~------~~~~--~~~~~~~Sa~~~~gv~~l~~ 151 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQK-KFNF------AEKH--NLPLYYVSAADGTNVVKLFQ 151 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHHH-HHHH------HHHc--CCeEEEEeCCCCCCHHHHHH
Confidence 999855433332 2333333 378999999999985321111 1111 1111 25899999999999999999
Q ss_pred HHHHH
Q psy1758 225 NISLQ 229 (1527)
Q Consensus 225 ~l~~~ 229 (1527)
.+...
T Consensus 152 ~l~~~ 156 (161)
T cd04124 152 DAIKL 156 (161)
T ss_pred HHHHH
Confidence 99754
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-18 Score=178.58 Aligned_cols=155 Identities=18% Similarity=0.161 Sum_probs=124.7
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..++.++|+.|||||+|+.+++...|..-...++.++++...+..+++ ++++|||+|||.|.+.+..+++.|.+++||
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLV 85 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLV 85 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEE
Confidence 368999999999999999999999998888889999999999888887 788999999999999999999999999999
Q ss_pred EeCCCCC----cHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 147 VAADDGV----MPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 147 vda~~g~----~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
||.+... ..+|.+-+++....|..+++++||+||..-. .+..+. -..+.++. ...++++||+++.||++.
T Consensus 86 ydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR--~Vs~EE--GeaFA~eh--gLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 86 YDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR--EVSKEE--GEAFAREH--GLIFMETSAKTAENVEEA 159 (216)
T ss_pred EEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccc--cccHHH--HHHHHHHc--CceeehhhhhhhhhHHHH
Confidence 9999843 4556666666556678899999999996521 111111 11122222 247889999999999999
Q ss_pred HHHHHHH
Q psy1758 223 LENISLQ 229 (1527)
Q Consensus 223 ~~~l~~~ 229 (1527)
|......
T Consensus 160 F~nta~~ 166 (216)
T KOG0098|consen 160 FINTAKE 166 (216)
T ss_pred HHHHHHH
Confidence 9988643
|
|
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.5e-18 Score=179.94 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=114.4
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++|+|||||++++....+.....++++.+.....+.+++. .+.||||||++.|..++...++.+|++++|
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv 82 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIA 82 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 468999999999999999999988776655566656666666666664 789999999999999999999999999999
Q ss_pred EeCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++.... +|...+......++|+++|+||+|+....... ....+.. . .+..+++++||++|.|++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------~-~~~~~~~e~Sa~~~~~v~ 155 (165)
T cd01864 83 YDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAE------K-NGMLAVLETSAKESQNVE 155 (165)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHH------H-cCCcEEEEEECCCCCCHH
Confidence 999985432 23333333334578999999999997532111 1111111 1 122468999999999999
Q ss_pred HHHHHHHH
Q psy1758 221 KLLENISL 228 (1527)
Q Consensus 221 eL~~~l~~ 228 (1527)
++++.+..
T Consensus 156 ~~~~~l~~ 163 (165)
T cd01864 156 EAFLLMAT 163 (165)
T ss_pred HHHHHHHH
Confidence 99999864
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-18 Score=163.36 Aligned_cols=78 Identities=22% Similarity=0.359 Sum_probs=74.7
Q ss_pred eeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhc-ChHHHHccccceeEEEEeEecceeec
Q psy1758 1317 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLI-GFQNEFITLTRGTGLISHVFEEYAPF 1394 (1527)
Q Consensus 1317 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~-g~~~~l~s~T~G~g~~~~~f~~Y~~~ 1394 (1527)
|||++++|.||++|+|+||++|++|||++++|+..++++++|+|.+|+|+++ ||+++|+++|+|+|+|+++|+||+|.
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 8999999999999999999999999999999998655689999999999995 99999999999999999999999985
|
LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage. |
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.6e-17 Score=213.51 Aligned_cols=114 Identities=27% Similarity=0.384 Sum_probs=97.7
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc----------------ccccCCceeEEEEEEEEEeC----------CeEEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV----------------VFSEAGGITQHIGAYNVVTN----------HGSITFL 121 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~----------------~~~~~~giT~~~~~~~~~~~----------~~~i~~i 121 (1527)
+-.+|+++||+|||||||+++|..... ......|+|++.....+.|. +..++|+
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 344899999999999999999975321 11223477887766666665 5679999
Q ss_pred eCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCC
Q psy1758 122 DTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL 181 (1527)
Q Consensus 122 DTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~ 181 (1527)
|||||.+|......+++.+|++|+|+|+.+|+..|+..+|+.+...++|+|+++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 999999999999999999999999999999999999999999999999999999999997
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-18 Score=188.93 Aligned_cols=158 Identities=28% Similarity=0.385 Sum_probs=128.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCC-h-------hhHHHHHHhhc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPG-H-------EAFTAMRARGA 137 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG-~-------e~f~~~~~~~~ 137 (1527)
.+...|+|+|.||+|||||+|+|.+... .++..+.+|++.....++.++.++.|+|||| | +........++
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 4667899999999999999999999986 8899999999999999999999999999999 2 23344455678
Q ss_pred cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 138 KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 138 ~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
..+|++++|+|++++..+.....+..++..+.|+++++||+|+...... ...+.... .....+..++++||++|.
T Consensus 84 ~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~--l~~~~~~~---~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 84 KDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTV--LLKLIAFL---KKLLPFKEIVPISALKGD 158 (298)
T ss_pred ccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHH--HHHHHHHH---HhhCCcceEEEeeccccC
Confidence 9999999999999988888888888888877899999999998774431 11111111 112233489999999999
Q ss_pred ChhHHHHHHHHH
Q psy1758 218 GINKLLENISLQ 229 (1527)
Q Consensus 218 gI~eL~~~l~~~ 229 (1527)
|++.|.+.+...
T Consensus 159 n~~~L~~~i~~~ 170 (298)
T COG1159 159 NVDTLLEIIKEY 170 (298)
T ss_pred CHHHHHHHHHHh
Confidence 999999999643
|
|
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=179.75 Aligned_cols=152 Identities=17% Similarity=0.157 Sum_probs=112.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|....+.....+++..++....+..++. ++.+|||||++.|..++..+++.+|++|+|+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 82 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 82 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 57999999999999999999998887666666555655555555554 6789999999999999999999999999999
Q ss_pred eCCCCCcHHHHHH----HHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQTREA----IAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~qt~e~----i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++....+.... +......+.|+++|+||+|+...... +....+. ..+ ..+++++||++|.|+++
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~e~Sa~~~~~i~e 154 (166)
T cd04122 83 DITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFA------DEN--GLLFLECSAKTGENVED 154 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHH------HHc--CCEEEEEECCCCCCHHH
Confidence 9998443322222 22222346789999999999653211 1111111 111 25899999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|+.++..
T Consensus 155 ~f~~l~~~ 162 (166)
T cd04122 155 AFLETAKK 162 (166)
T ss_pred HHHHHHHH
Confidence 99998743
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=186.03 Aligned_cols=157 Identities=30% Similarity=0.376 Sum_probs=115.8
Q ss_pred CEEEEEecCCCChhHHHHHHHccc---cccccCCceeEEEEEEEEEeC---------------------------C----
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTN---VVFSEAGGITQHIGAYNVVTN---------------------------H---- 115 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~---~~~~~~~giT~~~~~~~~~~~---------------------------~---- 115 (1527)
.+|+++||+|||||||+.+|.... .......++|.......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 369999999999999999997652 123333466666665554442 3
Q ss_pred --eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC-CcHHHHHHHHHHHHcCC-CEEEEEEcccCCcch-hHHHHH
Q psy1758 116 --GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG-VMPQTREAIAHAKISGV-PLIVAINKIDKLDIN-LDRIKQ 190 (1527)
Q Consensus 116 --~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g-~~~qt~e~i~~~~~~~v-piIvviNKiDl~~~~-~~~~~~ 190 (1527)
..++|||||||++|...+..++..+|++++|+|++++ ...++.+.+..+...+. |+++|+||+|+.+.. ......
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYE 160 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHH
Confidence 6799999999999999999999999999999999984 66788888877766666 689999999997532 111222
Q ss_pred HHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHH
Q psy1758 191 DLISEQVIPEEYGGASPFISISAKTGVGINKLLENISL 228 (1527)
Q Consensus 191 ~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~ 228 (1527)
.+.... .......++++++||++|.|+++|++.|..
T Consensus 161 ~i~~~~--~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~ 196 (203)
T cd01888 161 QIKKFV--KGTIAENAPIIPISAQLKYNIDVLLEYIVK 196 (203)
T ss_pred HHHHHH--hccccCCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 221110 000112468999999999999999999964
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.2e-18 Score=190.82 Aligned_cols=151 Identities=32% Similarity=0.395 Sum_probs=114.4
Q ss_pred EEEEEecCCCChhHHHHHHHcccc-------------------------------ccccCCceeEEEEEEEEEeCCeEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNV-------------------------------VFSEAGGITQHIGAYNVVTNHGSIT 119 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~-------------------------------~~~~~~giT~~~~~~~~~~~~~~i~ 119 (1527)
+|+++||+|||||||+++|..... ......|+|++.....+.+++.+++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999998843210 1122469999999999999999999
Q ss_pred EEeCCChhhHHHHHHhhccccCEEEEEEeCCC-------CCcHHHHHHHHHHHHcC-CCEEEEEEcccCCcc--h---hH
Q psy1758 120 FLDTPGHEAFTAMRARGAKVTDIVVLVVAADD-------GVMPQTREAIAHAKISG-VPLIVAINKIDKLDI--N---LD 186 (1527)
Q Consensus 120 ~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~-------g~~~qt~e~i~~~~~~~-vpiIvviNKiDl~~~--~---~~ 186 (1527)
|||||||.+|...+..+++.+|++|+|+|+++ +...++.+++..+...+ .|+++|+||+|+... + ..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999998 45678888887777777 578999999999732 1 22
Q ss_pred HHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+....+.............++++++||++|.|+++
T Consensus 161 ~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 161 EIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 23332221110000011247899999999999973
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=179.63 Aligned_cols=153 Identities=18% Similarity=0.170 Sum_probs=115.1
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++|+|||||++++.+..+...+.++++.+.....+..++. .+.+|||||++.|..++...++.+|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 478999999999999999999999887777777766665555666664 688999999999999999999999999999
Q ss_pred EeCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++.... +|...+......+.|+++|+||+|+.+.... +....+.. .+ .++++++||++|.|++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~~v~ 154 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALAD------EY--GIKFLETSAKANINVE 154 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHH------Hc--CCEEEEEeCCCCCCHH
Confidence 999884432 2222222222346899999999999753211 11111111 11 2589999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
++|+.+...
T Consensus 155 ~~~~~i~~~ 163 (167)
T cd01867 155 EAFFTLAKD 163 (167)
T ss_pred HHHHHHHHH
Confidence 999999754
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-17 Score=180.46 Aligned_cols=154 Identities=14% Similarity=0.154 Sum_probs=115.8
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
...+|+++|..++|||||+.+|....+...+.++++.+.....+..++. .+.||||||++.|..++..+++.+|++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 4478999999999999999999998876666666777776666666664 68899999999999999999999999999
Q ss_pred EEeCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++.... .|.+.+... ..++|+|||+||+|+..... .+..+.+. ... .++++++||++|.||
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~-~~~~piilVGNK~DL~~~~~v~~~~~~~~a------~~~--~~~~~e~SAk~g~~V 155 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEH-APGVPKILVGNRLHLAFKRQVATEQAQAYA------ERN--GMTFFEVSPLCNFNI 155 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccchhccCCCHHHHHHHH------HHc--CCEEEEecCCCCCCH
Confidence 9999984432 233333221 24789999999999964211 11111111 111 258999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
+++|+.+....
T Consensus 156 ~~~F~~l~~~i 166 (189)
T cd04121 156 TESFTELARIV 166 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999998543
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=177.84 Aligned_cols=152 Identities=17% Similarity=0.160 Sum_probs=111.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|.+|+|||||+++|.+..+.....++++.++....+..++ ..+.+|||||+++|..++..+++.+|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 4799999999999999999999988666666666555444444444 37889999999999999999999999999999
Q ss_pred eCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++.... +|.+.+......+.|+++|+||+|+.+.... +....+.. .+ ..+++++||++|.|+++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~gv~~ 153 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLAD------QL--GFEFFEASAKENINVKQ 153 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHH------Hc--CCEEEEEECCCCCCHHH
Confidence 99874322 2222222222246789999999999653221 11111111 11 24799999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|+.+...
T Consensus 154 l~~~l~~~ 161 (165)
T cd01865 154 VFERLVDI 161 (165)
T ss_pred HHHHHHHH
Confidence 99999754
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=189.08 Aligned_cols=159 Identities=30% Similarity=0.404 Sum_probs=128.8
Q ss_pred EEEEEecCCCChhHHHHHHHccccc------------------cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHH
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVV------------------FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAM 132 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~------------------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~ 132 (1527)
+|+++||+|+|||||+++|...... .....++|.+.....+.+++.+++|||||||.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4899999999999999999753211 1223577888888899999999999999999999999
Q ss_pred HHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc--------------
Q psy1758 133 RARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI-------------- 198 (1527)
Q Consensus 133 ~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~-------------- 198 (1527)
+.++++.+|++++|+|+.++...++.+++..+...++|+++++||+|+..++..+...++......
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~ 160 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNI 160 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEeeee
Confidence 999999999999999999999999999999998899999999999999876655544433221000
Q ss_pred -------------------------------c-c----------ccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 199 -------------------------------P-E----------EYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 199 -------------------------------~-~----------~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
. + ..+..+|+++.||.++.|+..|++.+...
T Consensus 161 ~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~ 233 (237)
T cd04168 161 CETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKL 233 (237)
T ss_pred eeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHh
Confidence 0 0 00346799999999999999999999754
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.7e-18 Score=183.15 Aligned_cols=158 Identities=12% Similarity=0.131 Sum_probs=112.8
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|+.++|||||+.+|....+...+.+++..++....+..++. .+.+|||+|++.|..++..+++.+|++++|+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 37999999999999999999999887777777776766556666664 6789999999999999999999999999999
Q ss_pred eCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHh-hhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 148 AADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLI-SEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 148 da~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~-~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
|+++.... +|.+.+........| |+|+||+|+............. ........++ ++++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK--APLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC--CEEEEEeCCCCCCHHHH
Confidence 99984332 233322222223455 6889999996321100000000 1111112222 58999999999999999
Q ss_pred HHHHHHHH
Q psy1758 223 LENISLQA 230 (1527)
Q Consensus 223 ~~~l~~~~ 230 (1527)
|+++....
T Consensus 158 f~~l~~~l 165 (182)
T cd04128 158 FKIVLAKA 165 (182)
T ss_pred HHHHHHHH
Confidence 99997543
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=178.55 Aligned_cols=152 Identities=18% Similarity=0.203 Sum_probs=114.7
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||++++.+..+...+.++++.+.....+..++. ++.+|||||+++|..++..+++.+|++++|+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~ 82 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 82 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEE
Confidence 57999999999999999999998887777777777776666666654 6889999999999999999999999999999
Q ss_pred eCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++.... +|...+......+.|+++|+||+|+....... ....+. ..+ .++++++||++|.|+++
T Consensus 83 d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~~~Sa~~~~~v~~ 154 (166)
T cd01869 83 DVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFA------DEL--GIPFLETSAKNATNVEQ 154 (166)
T ss_pred ECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHH------HHc--CCeEEEEECCCCcCHHH
Confidence 99984322 22222222222468999999999986532111 111111 111 35899999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|+.+...
T Consensus 155 ~~~~i~~~ 162 (166)
T cd01869 155 AFMTMARE 162 (166)
T ss_pred HHHHHHHH
Confidence 99999754
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >KOG0095|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-18 Score=167.08 Aligned_cols=154 Identities=21% Similarity=0.218 Sum_probs=125.5
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
-.+|+++|..|+|||+|+++++.+-|+.+...+|..++-...++.++. ++++|||+|+|+|++....+++.|+++|||
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 368999999999999999999999999998888999988888888775 788999999999999999999999999999
Q ss_pred EeCCC----CCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 147 VAADD----GVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 147 vda~~----g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
+|.+. ...|.|...+......++--|+|+||+|+.+. .++.+++-++.... .+.-|+++||+..+|++.|
T Consensus 87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr--revp~qigeefs~~----qdmyfletsakea~nve~l 160 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR--REVPQQIGEEFSEA----QDMYFLETSAKEADNVEKL 160 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh--hhhhHHHHHHHHHh----hhhhhhhhcccchhhHHHH
Confidence 99987 44678888787777777778999999998652 11222221111100 1235889999999999999
Q ss_pred HHHHHH
Q psy1758 223 LENISL 228 (1527)
Q Consensus 223 ~~~l~~ 228 (1527)
|..++.
T Consensus 161 f~~~a~ 166 (213)
T KOG0095|consen 161 FLDLAC 166 (213)
T ss_pred HHHHHH
Confidence 998863
|
|
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=176.39 Aligned_cols=152 Identities=22% Similarity=0.237 Sum_probs=113.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|.+..+...+.++++.+.....+..++. .++||||||++.|..++..+++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 37999999999999999999999987777777777776666666554 7889999999999999999999999999999
Q ss_pred eCCCCCcH----HHHHHHHHHHH-----cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 148 AADDGVMP----QTREAIAHAKI-----SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 148 da~~g~~~----qt~e~i~~~~~-----~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
|+++.... .|...+..... .+.|+++|+||+|+.+... ......+. ..++ .+++++||++|
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~~--~~~~~~Sa~~~ 152 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA------ESKG--FKYFETSACTG 152 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHH------HHcC--CeEEEEECCCC
Confidence 99984322 22222222211 4689999999999963111 11111111 1122 57999999999
Q ss_pred CChhHHHHHHHHH
Q psy1758 217 VGINKLLENISLQ 229 (1527)
Q Consensus 217 ~gI~eL~~~l~~~ 229 (1527)
.|++++++.|...
T Consensus 153 ~gi~~l~~~l~~~ 165 (168)
T cd04119 153 EGVNEMFQTLFSS 165 (168)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998743
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=180.14 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=109.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
+..+|+++|++|+|||||+++|....+. ...++++.+.. .+...+..+.+|||||++.|..++..+++.+|++|+|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~ 84 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 84 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 4578999999999999999999876653 33444444443 34456778999999999999999999999999999999
Q ss_pred eCCCCC-cHHHHHHHHHHH----HcCCCEEEEEEcccCCcc-hhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGV-MPQTREAIAHAK----ISGVPLIVAINKIDKLDI-NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~-~~qt~e~i~~~~----~~~vpiIvviNKiDl~~~-~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++.. .....+.+.... ..++|+++|+||+|+.+. ..++....+... ......++++++||++|.|+++
T Consensus 85 D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~----~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 85 DSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLT----RIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred eCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCC----ccCCCcEEEEEeeCCCCCChHH
Confidence 999843 222333333221 246899999999998653 222222221111 1111234789999999999999
Q ss_pred HHHHHH
Q psy1758 222 LLENIS 227 (1527)
Q Consensus 222 L~~~l~ 227 (1527)
+|++|.
T Consensus 161 ~~~~l~ 166 (168)
T cd04149 161 GLTWLS 166 (168)
T ss_pred HHHHHh
Confidence 999985
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=178.61 Aligned_cols=161 Identities=34% Similarity=0.396 Sum_probs=124.5
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec---CeEEEEEeCCCCCCchH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---GTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---~~~iniiDTPGh~df~~ 1000 (1527)
.|+|+|++|+|||||+++|+..... ....+++|.......+.+. ++.+++|||||+.+|..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 65 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVA----------------AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN 65 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccc----------------cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHH
Confidence 6999999999999999999754111 1123466766666666664 78999999999999998
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEE
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVI 1080 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi 1080 (1527)
.+..++..+|++++|+|++++...++...+..+...++|+++|+||+|+...+.+.+..++...... ........+|++
T Consensus 66 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 144 (168)
T cd01887 66 MRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQ-GEDEWGGDVQIV 144 (168)
T ss_pred HHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhcc-ccccccCcCcEE
Confidence 8888999999999999999998899988888888899999999999999765544444444332111 000112346899
Q ss_pred EeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1081 YTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1081 ~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
++||++|. |+.+|++++.++.
T Consensus 145 ~~Sa~~~~----------gi~~l~~~l~~~~ 165 (168)
T cd01887 145 PTSAKTGE----------GIDDLLEAILLLA 165 (168)
T ss_pred EeecccCC----------CHHHHHHHHHHhh
Confidence 99999998 9999999997653
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=180.63 Aligned_cols=154 Identities=17% Similarity=0.218 Sum_probs=108.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+.++|+++|++|+|||||+++|.+..+. ...+++. +....+.+++..+.+|||||++.|..++..+++.+|++++|
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLG--FQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWV 88 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccc--cceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 35678999999999999999999877542 2223222 23344556678899999999999999999999999999999
Q ss_pred EeCCCCCc-HHHHHHHH----HHHHcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVM-PQTREAIA----HAKISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~-~qt~e~i~----~~~~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++... ......+. .....+.|+++|+||+|+.+... ++....+ ... ......++++++||++|.|++
T Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~Sa~~g~gi~ 164 (173)
T cd04154 89 VDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREAL-ELD---KISSHHWRIQPCSAVTGEGLL 164 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHh-Ccc---ccCCCceEEEeccCCCCcCHH
Confidence 99998521 11122222 22235789999999999975321 2221111 110 011234689999999999999
Q ss_pred HHHHHHH
Q psy1758 221 KLLENIS 227 (1527)
Q Consensus 221 eL~~~l~ 227 (1527)
++|+++.
T Consensus 165 ~l~~~l~ 171 (173)
T cd04154 165 QGIDWLV 171 (173)
T ss_pred HHHHHHh
Confidence 9999885
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=177.37 Aligned_cols=150 Identities=19% Similarity=0.213 Sum_probs=107.4
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAAD 150 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~ 150 (1527)
+|+++|++|+|||||++++....+. ...+++..+. ..+......+.+|||||++.|..++..+++.+|++|+|+|++
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~--~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~ 78 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 78 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCC
Confidence 6999999999999999999877764 3445444333 334566778999999999999999999999999999999998
Q ss_pred CCC-cHHHHHHHHHHH----HcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 151 DGV-MPQTREAIAHAK----ISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 151 ~g~-~~qt~e~i~~~~----~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
+.. ..+..+.+..+. ..+.|+++++||+|+.+... .+....+. ........+.++++||++|.|++++|+
T Consensus 79 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~----~~~~~~~~~~~~~~Sak~g~gv~~~~~ 154 (159)
T cd04150 79 DRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLG----LHSLRNRNWYIQATCATSGDGLYEGLD 154 (159)
T ss_pred CHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhC----ccccCCCCEEEEEeeCCCCCCHHHHHH
Confidence 732 222333333221 23589999999999965322 22222221 111112234688999999999999999
Q ss_pred HHH
Q psy1758 225 NIS 227 (1527)
Q Consensus 225 ~l~ 227 (1527)
+|.
T Consensus 155 ~l~ 157 (159)
T cd04150 155 WLS 157 (159)
T ss_pred HHh
Confidence 884
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=175.80 Aligned_cols=150 Identities=19% Similarity=0.261 Sum_probs=111.9
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC----CeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN----HGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~----~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
+|+++|++|+|||||++++....+.....++++.++....+... ..++.||||||+++|...+..+++.+|++++|
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v 81 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILV 81 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEE
Confidence 79999999999999999999988876667777777655555554 34789999999999999999999999999999
Q ss_pred EeCCCCCcHHHHHHHHH-H--HHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 147 VAADDGVMPQTREAIAH-A--KISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 147 vda~~g~~~qt~e~i~~-~--~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+|+++....+....|.. + ...++|+++|+||+|+...... .....+. ..+ .++++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~------~~~--~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 82 FSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALA------KRL--QLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHH------HHc--CCeEEEEECCCCCCHHH
Confidence 99998443333222221 1 1247899999999998653211 1111111 111 24899999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+++.|..
T Consensus 154 l~~~l~~ 160 (162)
T cd04106 154 LFEYLAE 160 (162)
T ss_pred HHHHHHH
Confidence 9999863
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >KOG1143|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-17 Score=184.73 Aligned_cols=284 Identities=19% Similarity=0.214 Sum_probs=216.1
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe--------------------
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-------------------- 982 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-------------------- 982 (1527)
.++|++|..|+|||||+..|+.. ..+........-+-.+..|...|-|-..++..+-+
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQg--eLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQG--ELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred EEEEEecCcccCcceeeeeeecc--cccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 37999999999999999999743 33322221223345667777777775544433322
Q ss_pred -cCeEEEEEeCCCCCCchHHHHHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCC-ChhhhH
Q psy1758 983 -NGTRINIIDTPGHADFGGEVERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-RPEWVV 1058 (1527)
Q Consensus 983 -~~~~iniiDTPGh~df~~ev~~~l--~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a-~~~~v~ 1058 (1527)
....+++||.+||..|...+..+| ...|.|+|||+|..|+.-.|++|+.++.++++|.+|+++|||+.+. ..+..+
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~~~~tv 325 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQGLKKTV 325 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccchhHHHHH
Confidence 134689999999999999888887 4579999999999999999999999999999999999999999754 357788
Q ss_pred HHHHHHHhhhcccccc-------------------cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCC--
Q psy1758 1059 DATFDLFDKLCATEEQ-------------------LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN-- 1117 (1527)
Q Consensus 1059 ~~~~~~~~~l~~~~~~-------------------~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~-- 1117 (1527)
.++..++.+.+....+ --.|++.+|..+|. |+ .|+..++..+|+....
T Consensus 326 ~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGe----------gl-~ll~~fLn~Lsp~~~~~e 394 (591)
T KOG1143|consen 326 KDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGE----------GL-RLLRTFLNCLSPAGTAEE 394 (591)
T ss_pred HHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCcc----------ch-hHHHHHHhhcCCcCChHH
Confidence 8888877655433211 12699999999998 76 6777777877654322
Q ss_pred ----CCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEE
Q psy1758 1118 ----SNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL 1193 (1527)
Q Consensus 1118 ----~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIva 1193 (1527)
...|..++|..++..|.+|.++-|-+.+|.++.|+.+.+.|.+||...+.+|.+|.. ++.++.-+.||+-..
T Consensus 395 ~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~R----nr~acrvvraGqaAs 470 (591)
T KOG1143|consen 395 RIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRR----NRQACRVVRAGQAAS 470 (591)
T ss_pred HHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeeec----cccceeeecCcccee
Confidence 246778899999999999999999999999999999999998888877888998864 467888999999887
Q ss_pred Eecce----ecccCCeeeCCCCCCCCCCCccCCCceeEEEEecC
Q psy1758 1194 ITGIE----EICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNN 1233 (1527)
Q Consensus 1194 i~gl~----~~~iGdTi~~~~~~~~l~~~~~~~P~l~~~~~~~~ 1233 (1527)
++--+ .++.|.++...+.. |.+...|.++-
T Consensus 471 lsl~d~D~~~LR~GMVl~~~~~n----------P~~c~~F~A~~ 504 (591)
T KOG1143|consen 471 LSLNDPDGVSLRRGMVLAEIDHN----------PPVCYEFTANL 504 (591)
T ss_pred eeccCCCccchhcceEEeecCCC----------CceEEEEeeee
Confidence 75321 35567777654432 55677776543
|
|
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-17 Score=182.22 Aligned_cols=154 Identities=16% Similarity=0.136 Sum_probs=114.0
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC-C--eEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN-H--GSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~-~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+|+++|++|+|||||+++|....+...+.++++.++....+.++ + ..+.||||||++.|..++..+++.+|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 379999999999999999999988877777777777666566655 3 3688999999999999999999999999999
Q ss_pred EeCCCCCcHHHH----HHHHHH-H---HcCCCEEEEEEcccCCcch--hHHHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 147 VAADDGVMPQTR----EAIAHA-K---ISGVPLIVAINKIDKLDIN--LDRIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 147 vda~~g~~~qt~----e~i~~~-~---~~~vpiIvviNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
+|+++....+.. ..+... . ..++|+++|+||+|+.+.. .......+... . +..+++++||++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~------~-~~~~~~e~Sak~~ 153 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE------N-GFIGWFETSAKEG 153 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHH------c-CCceEEEEeCCCC
Confidence 999984332222 222211 1 2468999999999996311 11111122111 1 1247999999999
Q ss_pred CChhHHHHHHHHHH
Q psy1758 217 VGINKLLENISLQA 230 (1527)
Q Consensus 217 ~gI~eL~~~l~~~~ 230 (1527)
.|++++|++|....
T Consensus 154 ~~v~e~f~~l~~~l 167 (201)
T cd04107 154 INIEEAMRFLVKNI 167 (201)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998543
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-17 Score=190.79 Aligned_cols=117 Identities=32% Similarity=0.382 Sum_probs=103.1
Q ss_pred EEEEEecCCCChhHHHHHHHcccc------------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHH
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNV------------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAM 132 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~------------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~ 132 (1527)
+|+++||+|+|||||+++|..... ......|+|++.....+.|++.+++|||||||.+|...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 489999999999999999864211 12234689999999999999999999999999999999
Q ss_pred HHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHH
Q psy1758 133 RARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR 187 (1527)
Q Consensus 133 ~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~ 187 (1527)
+.++++.+|++++|+|+.+++..++...+..+...++|+++++||+|+.+++.+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~ 135 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFR 135 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999998655433
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=176.10 Aligned_cols=151 Identities=18% Similarity=0.142 Sum_probs=114.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|.+..+.....++.+.+.....+..++. .+.||||||++.|..++...++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 37999999999999999999998887777777776666666666554 6889999999999999999999999999999
Q ss_pred eCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++.... +|.+.+......++|+++|+||+|+...... .....+.. .++ ++++++||++|.|+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~------~~~--~~~~~~Sa~~~~~i~~ 152 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQ------ENG--LLFLETSALTGENVEE 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHH------HcC--CEEEEEECCCCCCHHH
Confidence 99985433 3333333344468899999999999652211 11111111 122 5899999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+|+.++.
T Consensus 153 ~~~~~~~ 159 (161)
T cd04113 153 AFLKCAR 159 (161)
T ss_pred HHHHHHH
Confidence 9999864
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-17 Score=181.91 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=111.8
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|.+|+|||||+.++....+...+.|++..+.. ..+..++ ..+.+|||||+++|..++..+++.+|++|+|+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 57999999999999999999998887677776655543 2345555 36789999999999999999999999999999
Q ss_pred eCCCCCcHHHH-H-HHHHHH--HcCCCEEEEEEcccCCcchhHHHHHHHhhh--ccc-------ccccCCCCcEEEeecc
Q psy1758 148 AADDGVMPQTR-E-AIAHAK--ISGVPLIVAINKIDKLDINLDRIKQDLISE--QVI-------PEEYGGASPFISISAK 214 (1527)
Q Consensus 148 da~~g~~~qt~-e-~i~~~~--~~~vpiIvviNKiDl~~~~~~~~~~~l~~~--~~~-------~~~~~~~~~v~~iSAk 214 (1527)
|+++....+.. + ++..+. ..++|+|+|+||+|+.+... ....+... ... .....+.++++++||+
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~--~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS--TIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChh--hHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 99985433222 1 122222 24789999999999865321 11111100 000 0001223689999999
Q ss_pred CCCChhHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~ 229 (1527)
+|.|++++|+.++.+
T Consensus 159 tg~~v~~~f~~~~~~ 173 (175)
T cd01874 159 TQKGLKNVFDEAILA 173 (175)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999754
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=197.40 Aligned_cols=157 Identities=25% Similarity=0.276 Sum_probs=119.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChh-hH-------HHHHHhhc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE-AF-------TAMRARGA 137 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e-~f-------~~~~~~~~ 137 (1527)
.+..+|+++|++|||||||+|+|.+..+ ..++.+++|++.....+.+++.++.||||||+. .+ ......++
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 4556999999999999999999998876 456677888888777888888999999999973 22 22223457
Q ss_pred cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 138 KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 138 ~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
..||++++|+|+.++.......++..+...+.|.|+|+||+|+.+.........+. ......++|++||++|.
T Consensus 130 ~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~-------~~~~~~~i~~iSAktg~ 202 (339)
T PRK15494 130 HSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLT-------ENHPDSLLFPISALSGK 202 (339)
T ss_pred hhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHH-------hcCCCcEEEEEeccCcc
Confidence 89999999999988776666666666777788989999999996532222222111 11223579999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
|+++|+++|....
T Consensus 203 gv~eL~~~L~~~l 215 (339)
T PRK15494 203 NIDGLLEYITSKA 215 (339)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999997543
|
|
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-17 Score=176.84 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=111.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||++++....+.....+++..++....+..++. .+.+|||||++.|..++...+..+|++|+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 37999999999999999999987776666666655555555554443 6889999999999998888999999999999
Q ss_pred eCCCCCcHHHHHHH-HHHHH--cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 148 AADDGVMPQTREAI-AHAKI--SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 148 da~~g~~~qt~e~i-~~~~~--~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
|+++....+....| ..+.. .++|+++|+||+|+...........+. . ....+++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~------~--~~~~~~~e~Sa~~~~~v~~~f~ 152 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFH------R--KKNLQYYEISAKSNYNFEKPFL 152 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHH------H--HcCCEEEEEeCCCCCChHHHHH
Confidence 99985443332222 22221 279999999999997422111111111 1 1235899999999999999999
Q ss_pred HHHHHH
Q psy1758 225 NISLQA 230 (1527)
Q Consensus 225 ~l~~~~ 230 (1527)
.|....
T Consensus 153 ~l~~~~ 158 (166)
T cd00877 153 WLARKL 158 (166)
T ss_pred HHHHHH
Confidence 998553
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=180.73 Aligned_cols=156 Identities=17% Similarity=0.222 Sum_probs=111.4
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++++|||||+.++....+...+.+++.... ...+..++. ++.||||+|+++|..++..+++.+|++|+|+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 4799999999999999999999998777777665444 233445554 7889999999999999999999999999999
Q ss_pred eCCCCCcHHHH--HHHHHHH--HcCCCEEEEEEcccCCcchhH--------HHHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 148 AADDGVMPQTR--EAIAHAK--ISGVPLIVAINKIDKLDINLD--------RIKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 148 da~~g~~~qt~--e~i~~~~--~~~vpiIvviNKiDl~~~~~~--------~~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
|.++....+.. .++..++ ..++|+++|+||+|+.+.... .+..+.. ......+ +..+++++||++
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~--~~~a~~~-~~~~~~E~SAk~ 157 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQG--EELRKQI-GAAAYIECSSKT 157 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHH--HHHHHHc-CCCEEEECCCCc
Confidence 99985443322 1222222 247899999999999652110 0000000 0011111 223699999999
Q ss_pred CCChhHHHHHHHHH
Q psy1758 216 GVGINKLLENISLQ 229 (1527)
Q Consensus 216 g~gI~eL~~~l~~~ 229 (1527)
|.||+++|+.++..
T Consensus 158 ~~nV~~~F~~~~~~ 171 (176)
T cd04133 158 QQNVKAVFDAAIKV 171 (176)
T ss_pred ccCHHHHHHHHHHH
Confidence 99999999999754
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-17 Score=178.85 Aligned_cols=159 Identities=38% Similarity=0.564 Sum_probs=124.6
Q ss_pred EEEEEecCCCChhHHHHHHHcccccccc----------------CCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHH
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSE----------------AGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRA 134 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~----------------~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~ 134 (1527)
+|+++|.+|+|||||+++|.+....... ..++|.+.....+.+.+..++||||||+.+|...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999887654322 346777777777788888999999999999999999
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCc-chhHHHHHHHhhhccccc---------ccCC
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLD-INLDRIKQDLISEQVIPE---------EYGG 204 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~-~~~~~~~~~l~~~~~~~~---------~~~~ 204 (1527)
.+++.+|++++|+|+.++...+..+.+..+...+.|+++|+||+|+.. .........+........ ....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGL 160 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCC
Confidence 999999999999999998888888888888878999999999999975 222222222222111100 0123
Q ss_pred CCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 205 ASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 205 ~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
..+++++||++|.|++++++.|...
T Consensus 161 ~~~v~~~Sa~~g~gi~~l~~~l~~~ 185 (189)
T cd00881 161 LVPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred cceEEEEecccCcCHHHHHHHHHhh
Confidence 5789999999999999999998643
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2 | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-18 Score=159.08 Aligned_cols=78 Identities=49% Similarity=0.941 Sum_probs=75.5
Q ss_pred eeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeec
Q psy1758 1317 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPF 1394 (1527)
Q Consensus 1317 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~ 1394 (1527)
|||++++|.||++|+|+||++|++|||++.+++..++++++|+|.+|+++++||+++|+++|+|+|+|+++|+||+|+
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 899999999999999999999999999999999875578999999999999999999999999999999999999996
|
A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=177.69 Aligned_cols=152 Identities=22% Similarity=0.241 Sum_probs=107.8
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||++++....+.....+++. +.....+..++. .+.||||||+++|..++..+++.+|++++|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 5899999999999999999998877655544443 333334455554 5778999999999999999999999999999
Q ss_pred eCCCCCcHHH-HHHHHHHH----HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 148 AADDGVMPQT-REAIAHAK----ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 148 da~~g~~~qt-~e~i~~~~----~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
|+++....+. ..++..+. ..++|+++|+||+|+.+........ .. .....++ .+++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~-~~---~~~~~~~--~~~~~~Sa~~~~~v~~l 154 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREE-GQ---ALARQWG--CPFYETSAKSKINVDEV 154 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHH-HH---HHHHHcC--CeEEEecCCCCCCHHHH
Confidence 9998432221 12222222 2468999999999986522111100 00 0111222 68999999999999999
Q ss_pred HHHHHH
Q psy1758 223 LENISL 228 (1527)
Q Consensus 223 ~~~l~~ 228 (1527)
|+++..
T Consensus 155 ~~~l~~ 160 (163)
T cd04136 155 FADLVR 160 (163)
T ss_pred HHHHHH
Confidence 999864
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=175.28 Aligned_cols=150 Identities=23% Similarity=0.282 Sum_probs=107.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|.+..+.....+++.... ...+..++. .+.+|||||++.|..++..+++.+|++++|+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 5799999999999999999998887655555443322 334445554 5778999999999999999999999999999
Q ss_pred eCCCCCcHHHH-HHHHHH----HHcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQTR-EAIAHA----KISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~qt~-e~i~~~----~~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++....+.. .++..+ ...+.|+++|+||+|+...... .....+. ..+ .++++++||++|.|+++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~------~~~--~~~~~~~Sa~~~~gi~~ 152 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA------KSY--GIPYIETSAKTRQGVEE 152 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH------HHh--CCeEEEecCCCCCCHHH
Confidence 99974322221 112222 2347899999999998652211 1111111 111 24899999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+|+++..
T Consensus 153 l~~~l~~ 159 (162)
T cd04138 153 AFYTLVR 159 (162)
T ss_pred HHHHHHH
Confidence 9999864
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.5e-17 Score=175.43 Aligned_cols=151 Identities=19% Similarity=0.162 Sum_probs=112.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||++++.+..+...+.++++.+.....+..++ ..+.+|||||+++|..++..+++.+|++++|+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~ 84 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 84 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999887666666656665555555555 37889999999999999999999999999999
Q ss_pred eCCCCCcHHHHHH-HHHH---HHcCCCEEEEEEcccCCcch---hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 148 AADDGVMPQTREA-IAHA---KISGVPLIVAINKIDKLDIN---LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 148 da~~g~~~qt~e~-i~~~---~~~~vpiIvviNKiDl~~~~---~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|+++....+.... +..+ ...+.|+++|+||+|+.... ..... .+.. .+ ..+++++||++|.|++
T Consensus 85 d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~-~~~~------~~--~~~~~e~Sa~~~~~i~ 155 (168)
T cd01866 85 DITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGE-AFAK------EH--GLIFMETSAKTASNVE 155 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHH-HHHH------Hc--CCEEEEEeCCCCCCHH
Confidence 9997433332222 2222 23478999999999987422 11111 1111 11 2579999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
++|+.+...
T Consensus 156 ~~~~~~~~~ 164 (168)
T cd01866 156 EAFINTAKE 164 (168)
T ss_pred HHHHHHHHH
Confidence 999998754
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-17 Score=202.88 Aligned_cols=221 Identities=22% Similarity=0.311 Sum_probs=151.1
Q ss_pred HHHHHHHhCCCcc--Ccccc--CCHHHHHHHHHhcCCcee-------ecCCCCchhhhhhhcccCcc-cccccCCCEEEE
Q psy1758 7 VVIKNLMKLGQMV--TINQV--LDQETAMILVEEMGHVAH-------ASKLNDPESFLLNEYNKNIT-AESLVRAPIVTI 74 (1527)
Q Consensus 7 ~~i~~l~~~g~~~--~~~~~--l~~~~~~~~a~~~g~~~~-------~~~~~~~~~~~~~~l~~~~~-~~~~~r~~~V~I 74 (1527)
++.+.|...+..+ -.|.. .+.+....-+..+|+... ..++.++.+.+...+..... .......++|++
T Consensus 98 ~i~~~l~~~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~i 177 (429)
T TIGR03594 98 EIAKWLRKSGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAI 177 (429)
T ss_pred HHHHHHHHhCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcccccccccCCceEEEE
Confidence 4677777767642 22332 222222222345555211 12233344444444433221 122345679999
Q ss_pred EecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChh----------hHHHHH-HhhccccCE
Q psy1758 75 MGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE----------AFTAMR-ARGAKVTDI 142 (1527)
Q Consensus 75 vG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e----------~f~~~~-~~~~~~aD~ 142 (1527)
+|++|+|||||+++|.+... ..++.+|+|++.....+.+++..+.+|||||+. .|..++ ..+++.+|+
T Consensus 178 vG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~ 257 (429)
T TIGR03594 178 IGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADV 257 (429)
T ss_pred ECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCE
Confidence 99999999999999998764 567788999999888888888899999999963 333333 357789999
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCc-c-hhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 143 VVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLD-I-NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 143 ~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~-~-~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+|+|++++...++...+..+...++|+++|+||+|+.. . ........+.... .....+|++++||++|.|++
T Consensus 258 ~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~vi~~SA~~g~~v~ 333 (429)
T TIGR03594 258 VLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKL----PFLDFAPIVFISALTGQGVD 333 (429)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhc----ccCCCCceEEEeCCCCCCHH
Confidence 9999999999999999999988888999999999999972 1 1122222222111 11234799999999999999
Q ss_pred HHHHHHHHHHH
Q psy1758 221 KLLENISLQAE 231 (1527)
Q Consensus 221 eL~~~l~~~~~ 231 (1527)
++++.+....+
T Consensus 334 ~l~~~i~~~~~ 344 (429)
T TIGR03594 334 KLLDAIDEVYE 344 (429)
T ss_pred HHHHHHHHHHH
Confidence 99999986544
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-17 Score=177.87 Aligned_cols=156 Identities=19% Similarity=0.259 Sum_probs=107.3
Q ss_pred EEEEEecCCCChhHHHHHHHccccc----cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVV----FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~----~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
+|+++|++|+|||||+++|...... .......|.......+.+++..+.+||||||+.|..++...++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 4899999999999999999764321 111123344444455677788999999999999999999999999999999
Q ss_pred EeCCCCCc-HHHHHHHHHH----HHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 147 VAADDGVM-PQTREAIAHA----KISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 147 vda~~g~~-~qt~e~i~~~----~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+|+++... .+....+..+ ...++|+++++||+|+................. .......++++++||++|.|+++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~g~gv~e 159 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKA-EEIGRRDCLVLPVSALEGTGVRE 159 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhcccc-ccccCCceEEEEeeCCCCcCHHH
Confidence 99987421 1122222222 235799999999999865422222222211111 00111235899999999999999
Q ss_pred HHHHHH
Q psy1758 222 LLENIS 227 (1527)
Q Consensus 222 L~~~l~ 227 (1527)
++++|.
T Consensus 160 ~~~~l~ 165 (167)
T cd04160 160 GIEWLV 165 (167)
T ss_pred HHHHHh
Confidence 999985
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-17 Score=175.89 Aligned_cols=152 Identities=17% Similarity=0.201 Sum_probs=106.2
Q ss_pred EEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAA 149 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda 149 (1527)
+|+++|++|+|||||+++|.+..+ .....+++.... ..+...+.++.+|||||++.|..++..+++.+|++|+|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~ 78 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDS 78 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeC
Confidence 489999999999999999998753 333334333222 33456777899999999999999999999999999999999
Q ss_pred CCCCcHH-HHHHHHHH------HHcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 150 DDGVMPQ-TREAIAHA------KISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 150 ~~g~~~q-t~e~i~~~------~~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
++..... ....+..+ ...++|+++|+||+|+.+... .+....+. . .......++++++||++|.|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~-~---~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 79 SDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLG-L---ENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred CcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhC-C---ccccCceEEEEEeeCCCCCchHH
Confidence 9854321 11122211 124799999999999976432 22221111 1 11011234689999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+|++|..
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999853
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-17 Score=174.58 Aligned_cols=150 Identities=19% Similarity=0.220 Sum_probs=115.6
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
+|+++|++|+|||||++++.+..+...+.++++.+.....+..++. ++.+|||||++.|..++...++.+|++++|+|
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 81 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 81 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 7999999999999999999999988888888998888877777764 68899999999999999999999999999999
Q ss_pred CCCCCcHHHHH-HHHHHH-H--cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 149 ADDGVMPQTRE-AIAHAK-I--SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 149 a~~g~~~qt~e-~i~~~~-~--~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
+++....+... ++..+. . .+.|+++++||+|+..... .+....+.. .. .++++++||++|.|++++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~~v~~l 153 (161)
T cd01861 82 ITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAK------EL--NAMFIETSAKAGHNVKEL 153 (161)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHH------Hh--CCEEEEEeCCCCCCHHHH
Confidence 99854332222 222222 2 2489999999999953211 111111111 11 268999999999999999
Q ss_pred HHHHHH
Q psy1758 223 LENISL 228 (1527)
Q Consensus 223 ~~~l~~ 228 (1527)
++++..
T Consensus 154 ~~~i~~ 159 (161)
T cd01861 154 FRKIAS 159 (161)
T ss_pred HHHHHH
Confidence 999864
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-17 Score=179.96 Aligned_cols=160 Identities=13% Similarity=0.144 Sum_probs=112.4
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|+.++|||||+.++....+...+.+++..+.. ..+..++. .+.+|||||+++|..++..+++.+|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 468999999999999999999998887666666654432 23344554 688899999999999999999999999999
Q ss_pred EeCCCCCcHHHHH-HH-HHHH--HcCCCEEEEEEcccCCcchhH-HHHHHHh-------hhcccccccCCCCcEEEeecc
Q psy1758 147 VAADDGVMPQTRE-AI-AHAK--ISGVPLIVAINKIDKLDINLD-RIKQDLI-------SEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 147 vda~~g~~~qt~e-~i-~~~~--~~~vpiIvviNKiDl~~~~~~-~~~~~l~-------~~~~~~~~~~~~~~v~~iSAk 214 (1527)
||+++....+... .| ..+. ..++|+++|+||+|+.+.... +...... +....... .+.++++++||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~-~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQ-IHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHH-cCCcEEEEeCCC
Confidence 9999844332221 12 1121 247899999999999653211 0000000 00000111 123589999999
Q ss_pred CCCChhHHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQA 230 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~~ 230 (1527)
+|.||+++|+.++...
T Consensus 161 ~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 161 NQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998543
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-17 Score=175.57 Aligned_cols=150 Identities=19% Similarity=0.199 Sum_probs=107.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhh----------HHHHHHhhccc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA----------FTAMRARGAKV 139 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~----------f~~~~~~~~~~ 139 (1527)
|+|+++|++|+|||||+++|.+..+..+..+++|.+.....+.+++.+++||||||+.. +..+. .....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ 79 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAIT-ALAHL 79 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHH-HHHhc
Confidence 57999999999999999999998876666677788777777777788999999999742 11111 11234
Q ss_pred cCEEEEEEeCCCCCc---HHHHHHHHHHHHc--CCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 140 TDIVVLVVAADDGVM---PQTREAIAHAKIS--GVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 140 aD~~IlVvda~~g~~---~qt~e~i~~~~~~--~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
+|++++|+|+++... ....+++..++.. +.|+++|+||+|+............. .. ...+++++||+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~-------~~-~~~~~~~~Sa~ 151 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEE-------EL-EGEEVLKISTL 151 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhh-------hh-ccCceEEEEec
Confidence 689999999987432 2333444445444 78999999999997532211111111 11 23589999999
Q ss_pred CCCChhHHHHHHHH
Q psy1758 215 TGVGINKLLENISL 228 (1527)
Q Consensus 215 tg~gI~eL~~~l~~ 228 (1527)
+|.|++++++++..
T Consensus 152 ~~~gi~~l~~~l~~ 165 (168)
T cd01897 152 TEEGVDEVKNKACE 165 (168)
T ss_pred ccCCHHHHHHHHHH
Confidence 99999999999864
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-18 Score=162.64 Aligned_cols=82 Identities=30% Similarity=0.499 Sum_probs=77.6
Q ss_pred eEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceee
Q psy1758 1314 ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAP 1393 (1527)
Q Consensus 1314 ~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~ 1393 (1527)
++||||++++|.+|++|+|+|+++|++|||++.++...+++++.|+|.+|+++++||+++|++.|+|+|+|++.|+||+|
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~~ 80 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPIGGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYRP 80 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEESTTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhhhhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeEE
Confidence 58999999999999999999999999999999999997668999999999999999999999999999999999999999
Q ss_pred cc
Q psy1758 1394 FY 1395 (1527)
Q Consensus 1394 ~~ 1395 (1527)
+.
T Consensus 81 ~~ 82 (89)
T PF00679_consen 81 VP 82 (89)
T ss_dssp ES
T ss_pred CC
Confidence 98
|
EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y .... |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-17 Score=204.36 Aligned_cols=153 Identities=26% Similarity=0.358 Sum_probs=123.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChh--------hHHHHHHhhc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE--------AFTAMRARGA 137 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e--------~f~~~~~~~~ 137 (1527)
.+.++|+|+|++|||||||+|+|.+... .....+|+|++.....+.+++..+.||||||++ .|...+..++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 3558999999999999999999998764 567888999999999899999999999999975 3555566788
Q ss_pred cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 138 KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 138 ~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+.||++|+|+|++++......+++..+...++|+++|+||+|+....... .+.. ..+- ...+++||++|.
T Consensus 116 ~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~--~~~~-------~~g~-~~~~~iSA~~g~ 185 (472)
T PRK03003 116 RTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEADA--AALW-------SLGL-GEPHPVSALHGR 185 (472)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchhh--HHHH-------hcCC-CCeEEEEcCCCC
Confidence 99999999999999887777777777888899999999999986532111 1110 1111 134799999999
Q ss_pred ChhHHHHHHHHH
Q psy1758 218 GINKLLENISLQ 229 (1527)
Q Consensus 218 gI~eL~~~l~~~ 229 (1527)
|+++|++.|...
T Consensus 186 gi~eL~~~i~~~ 197 (472)
T PRK03003 186 GVGDLLDAVLAA 197 (472)
T ss_pred CcHHHHHHHHhh
Confidence 999999999754
|
|
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-17 Score=174.99 Aligned_cols=151 Identities=15% Similarity=0.187 Sum_probs=114.4
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|.+|+|||||+++|.+..+.....++++.++....+..++. .+.+|||||++.|..++..+++.+|++|+|+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 83 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 83 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEE
Confidence 58999999999999999999998887777777777777777777665 6889999999999999999999999999999
Q ss_pred eCCCCCcHH----HHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQ----TREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~q----t~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++....+ |...+......++|+++|+||+|+..... .+....+.. .+ .++++++||++|.|+++
T Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~~v~~ 155 (165)
T cd01868 84 DITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE------KN--GLSFIETSALDGTNVEE 155 (165)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHH------Hc--CCEEEEEECCCCCCHHH
Confidence 999733222 22222222223689999999999865321 111111111 11 25899999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+++.+..
T Consensus 156 l~~~l~~ 162 (165)
T cd01868 156 AFKQLLT 162 (165)
T ss_pred HHHHHHH
Confidence 9999864
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-17 Score=178.39 Aligned_cols=154 Identities=18% Similarity=0.217 Sum_probs=111.4
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|.+|+|||||++++....+.....+++.... ...+..++. .+.||||||++.|..++..+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 46899999999999999999998888655555554333 233455553 688999999999999999999999999999
Q ss_pred EeCCCCCcHHHHH----HHHHHH-HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 147 VAADDGVMPQTRE----AIAHAK-ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 147 vda~~g~~~qt~e----~i~~~~-~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+|+++....+... .+.... ..++|+++|+||+|+.+........ .. .....+ .++++++||++|.||++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~--~~--~~a~~~--~~~~~e~Sa~~~~~v~~ 154 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEE--GR--NLAREF--NCPFFETSAALRHYIDD 154 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHH--HH--HHHHHh--CCEEEEEecCCCCCHHH
Confidence 9999865443332 233322 2478999999999986421110000 00 011112 35899999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|++|+..
T Consensus 155 ~f~~l~~~ 162 (172)
T cd04141 155 AFHGLVRE 162 (172)
T ss_pred HHHHHHHH
Confidence 99999754
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-17 Score=191.03 Aligned_cols=152 Identities=21% Similarity=0.244 Sum_probs=113.6
Q ss_pred EEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhh--------HHHHHHhhccccC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA--------FTAMRARGAKVTD 141 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~--------f~~~~~~~~~~aD 141 (1527)
+|+++|++|+|||||+|+|.+..+ .++..+++|++........++.++.||||||+.. +......++..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 699999999999999999999886 5678889999876666666777899999999532 1223446678999
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 142 IVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 142 ~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
++++|+|+++....+ ...+..+...+.|+++|+||+|+... .......... .......+++++||++|.|+++
T Consensus 82 vvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~--~~~~~~~~~~----~~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 82 LILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFK--DKLLPLIDKY----AILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred EEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCH--HHHHHHHHHH----HhhcCCCceEEEecCCCCCHHH
Confidence 999999999865544 44455666778999999999999642 1111111111 0111223799999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
|++.|...
T Consensus 155 L~~~l~~~ 162 (270)
T TIGR00436 155 LAAFIEVH 162 (270)
T ss_pred HHHHHHHh
Confidence 99999754
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.6e-17 Score=175.85 Aligned_cols=156 Identities=17% Similarity=0.170 Sum_probs=113.3
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
+|+++|++|+|||||++++....+...+.+++..++....+..++. .+.||||||+++|..++..+++.+|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 6999999999999999999999888777787777766556666654 68899999999999999999999999999999
Q ss_pred CCCCCcHHHH-HHHHHHHH----cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHH
Q psy1758 149 ADDGVMPQTR-EAIAHAKI----SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223 (1527)
Q Consensus 149 a~~g~~~qt~-e~i~~~~~----~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~ 223 (1527)
+++....+.. +++..+.. ...|+++|+||+|+.+............ .....+ ..+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~--~~~~~~--~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAI--KLAAEM--QAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHH--HHHHHc--CCeEEEEECCCCCCHHHHH
Confidence 9873322222 22222222 2356999999999865321111010000 001111 2479999999999999999
Q ss_pred HHHHHHH
Q psy1758 224 ENISLQA 230 (1527)
Q Consensus 224 ~~l~~~~ 230 (1527)
+.|...+
T Consensus 158 ~~l~~~~ 164 (170)
T cd04108 158 FRVAALT 164 (170)
T ss_pred HHHHHHH
Confidence 9998654
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-17 Score=183.67 Aligned_cols=157 Identities=27% Similarity=0.389 Sum_probs=117.2
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccC--------------CceeEEEEE------------------------EEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEA--------------GGITQHIGA------------------------YNVV 112 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~--------------~giT~~~~~------------------------~~~~ 112 (1527)
+|+++|++++|||||+++|....+..+.. .|+|..+.. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 48999999999999999998654422111 233332111 2234
Q ss_pred eCCeEEEEEeCCChhhHHHHHHhhcc--ccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch-hHHHH
Q psy1758 113 TNHGSITFLDTPGHEAFTAMRARGAK--VTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN-LDRIK 189 (1527)
Q Consensus 113 ~~~~~i~~iDTPG~e~f~~~~~~~~~--~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~-~~~~~ 189 (1527)
..++.++|+|||||++|...+.+++. .+|++++|+|++++..+++.+++..+...++|+++|+||+|+.+.+ .....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~ 160 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETL 160 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHH
Confidence 45678999999999999998888875 7999999999999999999999999999999999999999986532 22333
Q ss_pred HHHhhhccc---------------------ccccCCCCcEEEeeccCCCChhHHHHHHH
Q psy1758 190 QDLISEQVI---------------------PEEYGGASPFISISAKTGVGINKLLENIS 227 (1527)
Q Consensus 190 ~~l~~~~~~---------------------~~~~~~~~~v~~iSAktg~gI~eL~~~l~ 227 (1527)
.++...... ...+...+|+|++||.+|+|+++|.+.|.
T Consensus 161 ~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 161 KDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 322221110 01234457999999999999999999885
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-17 Score=176.68 Aligned_cols=153 Identities=18% Similarity=0.180 Sum_probs=112.8
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC------------CeEEEEEeCCChhhHHHHHHhh
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN------------HGSITFLDTPGHEAFTAMRARG 136 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~------------~~~i~~iDTPG~e~f~~~~~~~ 136 (1527)
..+|+++|++|+|||||++++....+.....++++.++....+.+. ...+.||||||++.|..++..+
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 83 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAF 83 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHH
Confidence 4689999999999999999999988877777777666655545443 2478899999999999999999
Q ss_pred ccccCEEEEEEeCCCCCcHHHHH-HHHHHHH----cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEE
Q psy1758 137 AKVTDIVVLVVAADDGVMPQTRE-AIAHAKI----SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFI 209 (1527)
Q Consensus 137 ~~~aD~~IlVvda~~g~~~qt~e-~i~~~~~----~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~ 209 (1527)
++.+|++++|+|+++....+... ++..+.. .+.|+++|+||+|+.+... .+....+.. .+ .++++
T Consensus 84 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~ 155 (180)
T cd04127 84 FRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALAD------KY--GIPYF 155 (180)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHH------Hc--CCeEE
Confidence 99999999999999843322222 1222222 3678999999999965321 111111111 12 25899
Q ss_pred EeeccCCCChhHHHHHHHHH
Q psy1758 210 SISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 210 ~iSAktg~gI~eL~~~l~~~ 229 (1527)
++||++|.|++++|+.|...
T Consensus 156 e~Sak~~~~v~~l~~~l~~~ 175 (180)
T cd04127 156 ETSAATGTNVEKAVERLLDL 175 (180)
T ss_pred EEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999743
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-17 Score=177.33 Aligned_cols=151 Identities=26% Similarity=0.275 Sum_probs=108.2
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|.+|+|||||++++..+.+.....+++.... ...+..++. .+.+|||||++.|..++..+++.+|++++|+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998776555545443332 344555554 5679999999999999999999999999999
Q ss_pred eCCCCCcHH----HHHHHHH-HHHcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 148 AADDGVMPQ----TREAIAH-AKISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 148 da~~g~~~q----t~e~i~~-~~~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|.++....+ |...+.. ....+.|+++|+||+|+....... ....+. ..+ .++++++||++|.|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~~~Sa~~~~~v~ 152 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA------RQW--GCAFLETSAKAKINVN 152 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHH------HHh--CCEEEEeeCCCCCCHH
Confidence 998743222 2222221 123578999999999996532111 111111 112 2589999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
++|+++...
T Consensus 153 ~~~~~l~~~ 161 (164)
T cd04175 153 EIFYDLVRQ 161 (164)
T ss_pred HHHHHHHHH
Confidence 999999743
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-17 Score=177.23 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=111.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
...+|+++|++|+|||||++++..+.+. ...++++.++. .+...+..+.||||||++.|..++..+++.+|++|+|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~ 88 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV 88 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence 3578999999999999999999776663 34455555443 34556778999999999999999999999999999999
Q ss_pred eCCCCC-cHHHHHHHHHHH----HcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGV-MPQTREAIAHAK----ISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~-~~qt~e~i~~~~----~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++.. .....+.+..+. ..++|++||+||+|+.+.. ..++...+. ........+.++++||++|.|+++
T Consensus 89 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~----~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 89 DSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLG----LHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred ECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhC----ccccCCCcEEEEEeeCCCCCCHHH
Confidence 999743 223333443332 2368999999999997532 222222211 111112234678999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|++|...
T Consensus 165 ~~~~l~~~ 172 (175)
T smart00177 165 GLTWLSNN 172 (175)
T ss_pred HHHHHHHH
Confidence 99998644
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=7e-17 Score=177.86 Aligned_cols=153 Identities=19% Similarity=0.220 Sum_probs=111.4
Q ss_pred CEEEEEecCCCChhHHHHHHHcccccc-ccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVF-SEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~-~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+|+++|++|+|||||++++....+.. ...++++.+.....+..++. .++||||||+++|..++..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 379999999999999999999988754 34555555555444555553 788999999999999999999999999999
Q ss_pred EeCCCCCcHH----HHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQ----TREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~q----t~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++....+ |...+......++|+++|+||+|+..... ......+. ..+ .++++++||++|.|++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~------~~~--~~~~~e~Sa~~~~~v~ 152 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLA------KEY--GVPFMETSAKTGLNVE 152 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHH------HHc--CCeEEEEeCCCCCCHH
Confidence 9999843322 22222222234689999999999864211 11111111 112 2589999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
++|+.|....
T Consensus 153 ~l~~~l~~~~ 162 (191)
T cd04112 153 LAFTAVAKEL 162 (191)
T ss_pred HHHHHHHHHH
Confidence 9999998654
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-17 Score=174.83 Aligned_cols=150 Identities=21% Similarity=0.203 Sum_probs=106.3
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAAD 150 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~ 150 (1527)
+|+++|++++|||||+++|....+.. ..+++..+. ..+.+.+..+.||||||++.|..++..+++.+|++++|+|++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~ 77 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDST 77 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECC
Confidence 48999999999999999998776542 334333332 345567788999999999999999999999999999999998
Q ss_pred CCCcH-HHHHHHHH----HHHcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 151 DGVMP-QTREAIAH----AKISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 151 ~g~~~-qt~e~i~~----~~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
+.... ...+.+.. ....+.|+++|+||+|+.+.. ..+....+... .......+++++||++|.|++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~----~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 78 DRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLS----ELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCcc----ccCCCcEEEEEeeccCCCCHHHHHH
Confidence 74221 11222221 222478999999999997543 22222222110 0011224799999999999999999
Q ss_pred HHH
Q psy1758 225 NIS 227 (1527)
Q Consensus 225 ~l~ 227 (1527)
+|.
T Consensus 154 ~l~ 156 (158)
T cd04151 154 WLV 156 (158)
T ss_pred HHh
Confidence 985
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.5e-17 Score=173.58 Aligned_cols=150 Identities=21% Similarity=0.215 Sum_probs=113.4
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
+|+++|++|+|||||++++....+...+.++++.+.....+..++. .+.+|||||++.|..++..+++.+|++++|+|
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYD 81 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEE
Confidence 6999999999999999999999887777777777776666666664 67899999999999999999999999999999
Q ss_pred CCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 149 ADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 149 a~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
+++.... .|.+.+......+.|+++|+||+|+..... .+....+. ..++ ++++++||++|.|++++
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~------~~~~--~~~~e~Sa~~~~~v~~~ 153 (161)
T cd04117 82 ISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLA------KEYG--MDFFETSACTNSNIKES 153 (161)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHH------HHcC--CEEEEEeCCCCCCHHHH
Confidence 9984322 222222222223689999999999865321 11111111 1222 58999999999999999
Q ss_pred HHHHHH
Q psy1758 223 LENISL 228 (1527)
Q Consensus 223 ~~~l~~ 228 (1527)
|++|..
T Consensus 154 f~~l~~ 159 (161)
T cd04117 154 FTRLTE 159 (161)
T ss_pred HHHHHh
Confidence 999963
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-17 Score=177.12 Aligned_cols=156 Identities=15% Similarity=0.170 Sum_probs=111.4
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++++|||||+.++....+...+.|++..+.. ..+..++. .+.+|||+|++.|..++..+++.+|++++|
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilv 83 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 83 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEE
Confidence 468999999999999999999999887776666654443 34455554 688999999999999999999999999999
Q ss_pred EeCCCCCcHH-----HHHHHHHHHHcCCCEEEEEEcccCCcchhH----------HHHHHHhhhcccccccCCCCcEEEe
Q psy1758 147 VAADDGVMPQ-----TREAIAHAKISGVPLIVAINKIDKLDINLD----------RIKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 147 vda~~g~~~q-----t~e~i~~~~~~~vpiIvviNKiDl~~~~~~----------~~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
+|+++....+ |.+.+... ..+.|+++|+||+|+.+.... .+..+. .......+ +..+|+++
T Consensus 84 yDit~~~Sf~~~~~~w~~~i~~~-~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~--~~~~a~~~-~~~~~~E~ 159 (182)
T cd04172 84 FDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQ--GANMAKQI-GAATYIEC 159 (182)
T ss_pred EECCCHHHHHHHHHHHHHHHHHH-CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHH--HHHHHHHc-CCCEEEEC
Confidence 9999854333 22222222 246899999999998542100 000000 00011111 22489999
Q ss_pred eccCCCC-hhHHHHHHHHH
Q psy1758 212 SAKTGVG-INKLLENISLQ 229 (1527)
Q Consensus 212 SAktg~g-I~eL~~~l~~~ 229 (1527)
||++|.| |+++|+.+...
T Consensus 160 SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 160 SALQSENSVRDIFHVATLA 178 (182)
T ss_pred CcCCCCCCHHHHHHHHHHH
Confidence 9999998 99999988753
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-17 Score=175.41 Aligned_cols=150 Identities=22% Similarity=0.284 Sum_probs=107.4
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
+|+++|++|+|||||++++.+..+.....++++ +.....+..++. .+.+|||||+++|..++..+++.+|++++|+|
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 799999999999999999998887655555443 333334444443 67899999999999999999999999999999
Q ss_pred CCCCCcHH----HHHHHHH-HHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 149 ADDGVMPQ----TREAIAH-AKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 149 a~~g~~~q----t~e~i~~-~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+++....+ |.+.+.. ....+.|+++|+||+|+...... .....+. ..+ ..+++++||++|.|+++
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~~~Sa~~~~~i~~ 152 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA------RQW--GCPFLETSAKERVNVDE 152 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH------HHc--CCEEEEeecCCCCCHHH
Confidence 99843221 2222211 12246899999999998653211 1111111 111 25899999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|+.|..+
T Consensus 153 l~~~l~~~ 160 (164)
T smart00173 153 AFYDLVRE 160 (164)
T ss_pred HHHHHHHH
Confidence 99999754
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.7e-17 Score=177.59 Aligned_cols=155 Identities=19% Similarity=0.190 Sum_probs=110.8
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
+..+|+++|..++|||||++++....+. ...|++..+. ..+...+..+.+|||||++.|..++..+++.+|++|+|+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~ 92 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 4478999999999999999999877664 3445555444 345667789999999999999999999999999999999
Q ss_pred eCCCCCc-HHHHHHHHHHH----HcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVM-PQTREAIAHAK----ISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~-~qt~e~i~~~~----~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++... ....+.+.... ..++|++|++||+|+.+.... +....+ .........+.++++||++|+||++
T Consensus 93 D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l----~l~~~~~~~~~~~~~Sa~~g~gv~e 168 (181)
T PLN00223 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL----GLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
T ss_pred eCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHh----CccccCCCceEEEeccCCCCCCHHH
Confidence 9998432 22222332221 246899999999999764321 212111 1111001223577999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|++|...
T Consensus 169 ~~~~l~~~ 176 (181)
T PLN00223 169 GLDWLSNN 176 (181)
T ss_pred HHHHHHHH
Confidence 99999744
|
|
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-17 Score=177.72 Aligned_cols=159 Identities=19% Similarity=0.221 Sum_probs=110.0
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEe---CCeEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT---NHGSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~---~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
...+|+++|++|+|||||++++....+... .++++.+.....+.. .+..+.+|||||++.|..++..+++.+|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 357899999999999999999988776533 444444444444432 3458999999999999999999999999999
Q ss_pred EEEeCCCCCcHHH-H----HHHHHHHHcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 145 LVVAADDGVMPQT-R----EAIAHAKISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 145 lVvda~~g~~~qt-~----e~i~~~~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|+|+++....+. . +........+.|+++|+||+|+.... .+.. ..+....... ....++++++||++|.|
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~SA~~~~g 157 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEV-EKLLALHELS--ASTPWHVQPACAIIGEG 157 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHH-HHHhCccccC--CCCceEEEEeecccCCC
Confidence 9999998422111 1 12222234578999999999986431 2222 2211111100 01125789999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
+++++++|....
T Consensus 158 i~~l~~~l~~~l 169 (183)
T cd04152 158 LQEGLEKLYEMI 169 (183)
T ss_pred HHHHHHHHHHHH
Confidence 999999997543
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-17 Score=175.26 Aligned_cols=151 Identities=21% Similarity=0.224 Sum_probs=107.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||++++.+..+.....++++ +.....+..++. .+.+|||||+++|..++..+++.+|++++|+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc-ceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998876554444443 322333445554 6889999999999999999999999999999
Q ss_pred eCCCCCcH----HHHHHHHH-HHHcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 148 AADDGVMP----QTREAIAH-AKISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 148 da~~g~~~----qt~e~i~~-~~~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|+++.... +|.+.+.. ....+.|+++++||+|+....... ....+. ... .++++++||++|.|++
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~~~Sa~~~~~i~ 153 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELA------RKL--KIPYIETSAKDRLNVD 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHH------HHc--CCcEEEeeCCCCCCHH
Confidence 99984322 22222222 223478999999999986532111 111111 111 2589999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
++|+.|...
T Consensus 154 ~l~~~l~~~ 162 (164)
T cd04145 154 KAFHDLVRV 162 (164)
T ss_pred HHHHHHHHh
Confidence 999999643
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.5e-17 Score=182.47 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=115.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
....+|+++|++|+|||||++++....+...+.+++..++....+..++ ..+.+|||||++.|..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 4567999999999999999999998888766666665555555554443 47889999999999999999999999999
Q ss_pred EEEeCCCCCcHHHHHHH-HHHH--HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 145 LVVAADDGVMPQTREAI-AHAK--ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 145 lVvda~~g~~~qt~e~i-~~~~--~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+|||+++....+....| ..+. ..++|+++|+||+|+...........+. .. ..++++++||++|.||++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~------~~--~~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH------RK--KNLQYYEISAKSNYNFEK 162 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHH------Hh--cCCEEEEcCCCCCCCHHH
Confidence 99999985443332222 2221 3478999999999986422111000111 11 235899999999999999
Q ss_pred HHHHHHHHH
Q psy1758 222 LLENISLQA 230 (1527)
Q Consensus 222 L~~~l~~~~ 230 (1527)
+|++|+...
T Consensus 163 ~f~~l~~~~ 171 (219)
T PLN03071 163 PFLYLARKL 171 (219)
T ss_pred HHHHHHHHH
Confidence 999998543
|
|
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-17 Score=176.36 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=110.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++++|||||++++....+...+.+++..+.. ..+..++. .+.+|||||++.|..++..+++.+|++|+|+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 57999999999999999999999887776676655543 34555554 6789999999999999999999999999999
Q ss_pred eCCCCCcHH-----HHHHHHHHHHcCCCEEEEEEcccCCcchhH----------HHHHHHhhhcccccccCCCCcEEEee
Q psy1758 148 AADDGVMPQ-----TREAIAHAKISGVPLIVAINKIDKLDINLD----------RIKQDLISEQVIPEEYGGASPFISIS 212 (1527)
Q Consensus 148 da~~g~~~q-----t~e~i~~~~~~~vpiIvviNKiDl~~~~~~----------~~~~~l~~~~~~~~~~~~~~~v~~iS 212 (1527)
|.++...-+ |...+... ..+.|+++|+||+|+.+.... .+..+ +.......+ +..+++++|
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~-~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~--e~~~~a~~~-~~~~~~E~S 156 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEF-CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYE--QGCAIAKQL-GAEIYLECS 156 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHH-CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHH--HHHHHHHHh-CCCEEEECc
Confidence 999854333 22222221 247899999999998542100 00000 000011111 223799999
Q ss_pred ccCCCC-hhHHHHHHHHH
Q psy1758 213 AKTGVG-INKLLENISLQ 229 (1527)
Q Consensus 213 Aktg~g-I~eL~~~l~~~ 229 (1527)
|++|+| |+++|+.++..
T Consensus 157 A~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 157 AFTSEKSVRDIFHVATMA 174 (178)
T ss_pred cCcCCcCHHHHHHHHHHH
Confidence 999995 99999998763
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=198.97 Aligned_cols=161 Identities=28% Similarity=0.420 Sum_probs=128.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc-cccccCCceeEEEEEEEEEeCCeEEEEEeCCCh----------hhHHHHH-H
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN-VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGH----------EAFTAMR-A 134 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~-~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~----------e~f~~~~-~ 134 (1527)
...++|+++|++|+|||||+++|.+.. ...++.+|+|++.....+.+++..+.+|||||+ +.|..++ .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 457899999999999999999999766 567888999999988888888899999999994 3444333 3
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeec
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSA 213 (1527)
++++.+|++|+|+|++++...++...+..+...+.|+++|+||+|+.+... ......+.... .....+|++++||
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l----~~~~~~~i~~~SA 326 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRL----PFLDYAPIVFISA 326 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhc----ccccCCCEEEEeC
Confidence 577899999999999999999999999988888999999999999974321 12222222111 1223479999999
Q ss_pred cCCCChhHHHHHHHHHHH
Q psy1758 214 KTGVGINKLLENISLQAE 231 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~~~ 231 (1527)
++|.|++++++.+....+
T Consensus 327 ~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 327 LTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999876543
|
|
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=179.26 Aligned_cols=153 Identities=17% Similarity=0.070 Sum_probs=114.8
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC---eEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH---GSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~---~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+|+++|++|+|||||+++|.+..+...+.++++.++....+..++ ..+.||||||++.|..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 3799999999999999999999988888888888887766666643 4788999999999999999999999999999
Q ss_pred EeCCCCCcHH----HHHHHHHHH---HcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 147 VAADDGVMPQ----TREAIAHAK---ISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 147 vda~~g~~~q----t~e~i~~~~---~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+|+++....+ |...+.... ..++|+++|+||+|+.+.... .....+. ..+ ..+++++||++|.
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~------~~~--~~~~~~iSAktg~ 152 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFA------QAN--GMESCLVSAKTGD 152 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHH------HHc--CCEEEEEECCCCC
Confidence 9999843222 222232221 124679999999999642111 1111111 112 2479999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
|++++|+.|....
T Consensus 153 gv~~lf~~l~~~l 165 (215)
T cd04109 153 RVNLLFQQLAAEL 165 (215)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998553
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >KOG0464|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.8e-18 Score=190.96 Aligned_cols=249 Identities=25% Similarity=0.325 Sum_probs=192.1
Q ss_pred CCEEEEEecCCCChhHHHHHHHcccc------------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNV------------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~------------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~ 130 (1527)
-.+|.|+.|.++||||...++..-.. ......|||+.....+++|.+++++++|||||.+|.
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 34799999999999999998753211 233456999999999999999999999999999999
Q ss_pred HHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhh---------------
Q psy1758 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISE--------------- 195 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~--------------- 195 (1527)
-...+.++..|+++.|+|++.|+.+||...|+++.+.++|-++++||||+..++.+...+.+.+.
T Consensus 117 leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lpi~ea 196 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQLPIGEA 196 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999998765432221111000
Q ss_pred --------------cc--------------------------------------------------ccccc---------
Q psy1758 196 --------------QV--------------------------------------------------IPEEY--------- 202 (1527)
Q Consensus 196 --------------~~--------------------------------------------------~~~~~--------- 202 (1527)
.. +.+++
T Consensus 197 k~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i~a 276 (753)
T KOG0464|consen 197 KGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKIDA 276 (753)
T ss_pred ccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccccCH
Confidence 00 00000
Q ss_pred -------------CCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCC----------CCCCceEEEEEeecCCCceE
Q psy1758 203 -------------GGASPFISISAKTGVGINKLLENISLQAEILELKAPV----------TTPAKGVIIESRLDKGKGPV 259 (1527)
Q Consensus 203 -------------~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~----------~~p~~~~v~~~~~~~~~G~v 259 (1527)
...+|+.+.||.++.||..|++++.-. ++.|. .....++.+++-.++.+|++
T Consensus 277 ~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmy-----lpspeernyeflqwykddlcalafkvlhdkqrg~l 351 (753)
T KOG0464|consen 277 EELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMY-----LPSPEERNYEFLQWYKDDLCALAFKVLHDKQRGPL 351 (753)
T ss_pred HHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhc-----cCChhhcchHHHhhhhhhHHHHhhhhhcccccCce
Confidence 125689999999999999999988522 11111 12345667778889999999
Q ss_pred EEEEeeccEEEeccEEEe--cceeeeEeEeecc---CCceeeecCCCcceEecCCCCCCCCCCeEEEeC
Q psy1758 260 ATVLIQSGTLRCSDIVVA--GASYGRIRSMLNE---NGKNILEAGPSIPVEIQGLTKVPFSGEELFVIL 323 (1527)
Q Consensus 260 ~~~~v~~G~l~~gd~vv~--g~~~~kVr~i~~~---~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~ 323 (1527)
++.++++|+++..-.+.. |.+..++..++.. ....+.+..+|......|++.. ..||.+..-+
T Consensus 352 ~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~glk~t-atgdtivask 419 (753)
T KOG0464|consen 352 SFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHT-ATGDTIVASK 419 (753)
T ss_pred eEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccEEEEecceee-ccCCeEEecc
Confidence 999999999999998864 6777777766543 3345777888888888898875 7899876433
|
|
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.1e-17 Score=174.45 Aligned_cols=153 Identities=21% Similarity=0.214 Sum_probs=106.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEE-EEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGA-YNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~-~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
.+|+++|++|+|||||++++.+..+...+.+++...... .........+.+|||||+++|..++..+++.+|++++|+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 579999999999999999999988765555544322211 1222233478899999999999999999999999999999
Q ss_pred CCCCCcHH----HHHHHHHHHH---cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 149 ADDGVMPQ----TREAIAHAKI---SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 149 a~~g~~~q----t~e~i~~~~~---~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+++....+ +.+.+..... .++|+++|+||+|+............ .....+ .++++++||++|.|+++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~----~~~~~~--~~~~~e~SA~~g~~v~~ 155 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGA----ACATEW--NCAFMETSAKTNHNVQE 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHH----HHHHHh--CCcEEEeecCCCCCHHH
Confidence 99854332 2222332221 46899999999999652111000000 001112 25799999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+|++|..
T Consensus 156 ~f~~l~~ 162 (165)
T cd04140 156 LFQELLN 162 (165)
T ss_pred HHHHHHh
Confidence 9999964
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >KOG0466|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-17 Score=182.89 Aligned_cols=245 Identities=25% Similarity=0.291 Sum_probs=181.6
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe----------------
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY---------------- 982 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~---------------- 982 (1527)
.....||+-+||+-|||||++.++..- - ++ .-.-|-||.|||...++.-..
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv---~--------Tv--rFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s 101 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGV---H--------TV--RFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRS 101 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccc---e--------EE--EehhhhhcceeEEeccccceEEecCCCCCCCcchhhc
Confidence 345579999999999999999998532 1 11 123355677777665543221
Q ss_pred ----------------c-----CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC-CChhHHHHHHHHHHcCCcc
Q psy1758 983 ----------------N-----GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-PMPQTRFVTRKALKLGFKP 1040 (1527)
Q Consensus 983 ----------------~-----~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G-~~~qt~~~~~~~~~~glp~ 1040 (1527)
. -+.+.++|+|||.-+...|..+....|+++|++.+++. ++|||-+|+....-+.++.
T Consensus 102 ~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkh 181 (466)
T KOG0466|consen 102 FGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKH 181 (466)
T ss_pred cCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhce
Confidence 0 14688999999999999999999999999999999986 8999999999988888888
Q ss_pred EEE-EeccCCCCCC-hhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCC
Q psy1758 1041 IVV-VNKIDRSNAR-PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNS 1118 (1527)
Q Consensus 1041 Ivv-iNKiD~~~a~-~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~ 1118 (1527)
|++ -||+|+...+ ..+..+++.... .....-..|++++||.-++ +++.+.++|++.+|.|..|.
T Consensus 182 iiilQNKiDli~e~~A~eq~e~I~kFi----~~t~ae~aPiiPisAQlky----------NId~v~eyivkkIPvPvRdf 247 (466)
T KOG0466|consen 182 IIILQNKIDLIKESQALEQHEQIQKFI----QGTVAEGAPIIPISAQLKY----------NIDVVCEYIVKKIPVPVRDF 247 (466)
T ss_pred EEEEechhhhhhHHHHHHHHHHHHHHH----hccccCCCceeeehhhhcc----------ChHHHHHHHHhcCCCCcccc
Confidence 665 5999996542 122233333222 1222235699999999998 99999999999999999999
Q ss_pred CCCceeEEEeee--------ccccCceEEEEEeecCccccCCEEEEecCC-----CCC----cCcceeeeEEEeecCcee
Q psy1758 1119 NNPLQLQIISLE--------YSSYLGKIGIGRILSGRIKSLQDVVIMNGP-----DDK----PNKAKINQIRVFKGLDRV 1181 (1527)
Q Consensus 1119 ~~p~~~~V~~~~--------~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~-----~g~----~~~~kV~~i~~~~g~~~~ 1181 (1527)
..|.++.|...+ .++..|-++-|.+..|.|+.||.+.+-|.- +|. +.-.+|.++| .++.
T Consensus 248 ~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~----AE~n 323 (466)
T KOG0466|consen 248 TSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLF----AEQN 323 (466)
T ss_pred CCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHH----hhhc
Confidence 999999887644 445678899999999999999999886431 121 0112444444 2456
Q ss_pred EeeeeecCCEEEE
Q psy1758 1182 LVNEALSGDIVLI 1194 (1527)
Q Consensus 1182 ~v~~a~AGdIvai 1194 (1527)
+++.|.+|-.+.+
T Consensus 324 ~L~~AvPGGLIGV 336 (466)
T KOG0466|consen 324 DLQFAVPGGLIGV 336 (466)
T ss_pred cceeecCCceeee
Confidence 7889999998876
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-17 Score=171.38 Aligned_cols=146 Identities=23% Similarity=0.357 Sum_probs=116.2
Q ss_pred EEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH--------HHHhhccccCEE
Q psy1758 73 TIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA--------MRARGAKVTDIV 143 (1527)
Q Consensus 73 ~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~--------~~~~~~~~aD~~ 143 (1527)
+++|++|+|||||+++|.+... ..+..+++|++.......+.+..+.+|||||+..+.. .....++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 5899999999999999998763 4456678888888888888889999999999887543 444667889999
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHH
Q psy1758 144 VLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223 (1527)
Q Consensus 144 IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~ 223 (1527)
++|+|+.++......+.+..+...+.|+++|+||+|+.+.... ...+. .. +..+++++||++|.|+++++
T Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~-------~~-~~~~~~~~Sa~~~~gv~~l~ 150 (157)
T cd01894 81 LFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE--AAEFY-------SL-GFGEPIPISAEHGRGIGDLL 150 (157)
T ss_pred EEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH--HHHHH-------hc-CCCCeEEEecccCCCHHHHH
Confidence 9999999877777777777777788999999999999764332 11111 11 12368999999999999999
Q ss_pred HHHHH
Q psy1758 224 ENISL 228 (1527)
Q Consensus 224 ~~l~~ 228 (1527)
+++..
T Consensus 151 ~~l~~ 155 (157)
T cd01894 151 DAILE 155 (157)
T ss_pred HHHHh
Confidence 99864
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=184.73 Aligned_cols=116 Identities=31% Similarity=0.468 Sum_probs=99.8
Q ss_pred CEEEEEecCCCChhHHHHHHHccccc----------------------cccCCceeEEEEEEEEEeCCeEEEEEeCCChh
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVV----------------------FSEAGGITQHIGAYNVVTNHGSITFLDTPGHE 127 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~----------------------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e 127 (1527)
.+|+++||+|+|||||+++|...... .....+++.......+.+++.+++|||||||+
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 57999999999999999999753211 11123677778888899999999999999999
Q ss_pred hHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh
Q psy1758 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL 185 (1527)
Q Consensus 128 ~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~ 185 (1527)
+|...+..+++.+|++|+|+|+++++..++..++..+...++|+++++||+|+..++.
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~ 140 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDP 140 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCH
Confidence 9999899999999999999999999999998889888888999999999999876554
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-17 Score=178.09 Aligned_cols=154 Identities=21% Similarity=0.247 Sum_probs=109.8
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+.++|+++|++|+|||||++++....+.....+++...+ ...+..++. .+.||||||+++|..++..+++.+|++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 357899999999999999999999887655555444333 233344443 67899999999999999999999999999
Q ss_pred EEeCCCCCcHH----HHHHHHHH-HHcCCCEEEEEEcccCCcchhHHH--HHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 146 VVAADDGVMPQ----TREAIAHA-KISGVPLIVAINKIDKLDINLDRI--KQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 146 Vvda~~g~~~q----t~e~i~~~-~~~~vpiIvviNKiDl~~~~~~~~--~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
|+|+++....+ |.+.+... ...++|+++|+||+|+.+...... ..... ..+ ..+++++||++|.|
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~------~~~--~~~~~e~Sak~~~g 154 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELA------KSF--GIPFLETSAKQRVN 154 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH------HHh--CCEEEEeeCCCCCC
Confidence 99999853222 22222211 224789999999999864321111 11111 111 25899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
|+++|++|+...
T Consensus 155 i~~~~~~l~~~l 166 (189)
T PTZ00369 155 VDEAFYELVREI 166 (189)
T ss_pred HHHHHHHHHHHH
Confidence 999999997543
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.1e-17 Score=178.59 Aligned_cols=159 Identities=18% Similarity=0.198 Sum_probs=112.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+.++|+++|++|+|||||++++.+..+. ...+ |.......+.+++..+.+|||||++.|...+..+++.+|++++|
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~--T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV 93 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVP--TLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFL 93 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCC--ccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 46789999999999999999999887653 2222 33333455667788999999999999999888999999999999
Q ss_pred EeCCCCCc-HHHHHHHHHH----HHcCCCEEEEEEcccCCcc-hhHHHHHHHhhhccc-------ccccCCCCcEEEeec
Q psy1758 147 VAADDGVM-PQTREAIAHA----KISGVPLIVAINKIDKLDI-NLDRIKQDLISEQVI-------PEEYGGASPFISISA 213 (1527)
Q Consensus 147 vda~~g~~-~qt~e~i~~~----~~~~vpiIvviNKiDl~~~-~~~~~~~~l~~~~~~-------~~~~~~~~~v~~iSA 213 (1527)
+|+++... ....+.+..+ ...+.|+++++||+|+... ...+....+...... .+.....++++++||
T Consensus 94 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T cd00879 94 VDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSV 173 (190)
T ss_pred EECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEe
Confidence 99987421 1122222222 2356899999999999653 222222222211110 011223357999999
Q ss_pred cCCCChhHHHHHHHH
Q psy1758 214 KTGVGINKLLENISL 228 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~ 228 (1527)
++|+|++++|++|..
T Consensus 174 ~~~~gv~e~~~~l~~ 188 (190)
T cd00879 174 VKRQGYGEAFRWLSQ 188 (190)
T ss_pred cCCCChHHHHHHHHh
Confidence 999999999999964
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=171.73 Aligned_cols=153 Identities=21% Similarity=0.220 Sum_probs=112.5
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++|+|||||++++....+.....++++.+.....+..++. .+.||||||+++|..++..+++.+|++++|
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 84 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLT 84 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEE
Confidence 368999999999999999999998887666666666665555666554 678899999999999999999999999999
Q ss_pred EeCCCCCcHH----HHHHHHHHH----HcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 147 VAADDGVMPQ----TREAIAHAK----ISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 147 vda~~g~~~q----t~e~i~~~~----~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+|+++....+ |...+.... ..++|+++|+||+|+..... ......+.. .+ +..+++++||++|.
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~-~~~~~~e~Sa~~~~ 157 (170)
T cd04116 85 FAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR------EN-GDYPYFETSAKDAT 157 (170)
T ss_pred EECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH------HC-CCCeEEEEECCCCC
Confidence 9999854322 222222111 24689999999999863211 111111111 11 22479999999999
Q ss_pred ChhHHHHHHHH
Q psy1758 218 GINKLLENISL 228 (1527)
Q Consensus 218 gI~eL~~~l~~ 228 (1527)
|+.++|+.++.
T Consensus 158 ~v~~~~~~~~~ 168 (170)
T cd04116 158 NVAAAFEEAVR 168 (170)
T ss_pred CHHHHHHHHHh
Confidence 99999999864
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >KOG0087|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-17 Score=176.23 Aligned_cols=157 Identities=15% Similarity=0.143 Sum_probs=123.7
Q ss_pred cccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCE
Q psy1758 65 SLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDI 142 (1527)
Q Consensus 65 ~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~ 142 (1527)
......+|+++|++++|||-|+.+++...|.....++|...+....+..+++ +.+||||+|||+|......+++.|.+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 3345678999999999999999999999999999999999999988888887 67899999999999999999999999
Q ss_pred EEEEEeCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcch--hHHHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 143 VVLVVAADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDIN--LDRIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 143 ~IlVvda~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
+++|||.+..... .|...++.-...++++++|+||+||.+.. +.+....+.+ .....++++||..+
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae--------~~~l~f~EtSAl~~ 161 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAE--------KEGLFFLETSALDA 161 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHH--------hcCceEEEeccccc
Confidence 9999999875433 33333333334688999999999996511 1111111111 11247999999999
Q ss_pred CChhHHHHHHHHH
Q psy1758 217 VGINKLLENISLQ 229 (1527)
Q Consensus 217 ~gI~eL~~~l~~~ 229 (1527)
.|+++.|+.+...
T Consensus 162 tNVe~aF~~~l~~ 174 (222)
T KOG0087|consen 162 TNVEKAFERVLTE 174 (222)
T ss_pred ccHHHHHHHHHHH
Confidence 9999999888743
|
|
| >KOG0079|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-17 Score=162.48 Aligned_cols=156 Identities=20% Similarity=0.171 Sum_probs=121.2
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+.+|+|++++|||||+.+++...|..++.-+|..|+....+..+|. ++.||||+|+|.|+.+...+++..+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 34789999999999999999999999999988999999988888775 7889999999999999999999999999999
Q ss_pred eCCCCCcHHHHH-HHHHHH--HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 148 AADDGVMPQTRE-AIAHAK--ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 148 da~~g~~~qt~e-~i~~~~--~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
|++++....... ++..++ ...+|-++|+||.|.++...... ........+....+|++|||...|++..|.
T Consensus 89 DVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t------~dAr~~A~~mgie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDT------EDARAFALQMGIELFETSAKENENVEAMFH 162 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeeh------HHHHHHHHhcCchheehhhhhcccchHHHH
Confidence 999976543322 222222 23578999999999876321100 000011112346899999999999999999
Q ss_pred HHHHHHH
Q psy1758 225 NISLQAE 231 (1527)
Q Consensus 225 ~l~~~~~ 231 (1527)
.|..+..
T Consensus 163 cit~qvl 169 (198)
T KOG0079|consen 163 CITKQVL 169 (198)
T ss_pred HHHHHHH
Confidence 9986643
|
|
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=179.89 Aligned_cols=158 Identities=18% Similarity=0.194 Sum_probs=112.8
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
...+|+++|+++||||||+.+|....|...+.+++..+... .+..++. .+.||||||++.|..++..+++.+|++|+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 45789999999999999999999998877777776655432 3555554 68899999999999999999999999999
Q ss_pred EEeCCCCCcHH-----HHHHHHHHHHcCCCEEEEEEcccCCcchh----------HHHHHHHhhhcccccccCCCCcEEE
Q psy1758 146 VVAADDGVMPQ-----TREAIAHAKISGVPLIVAINKIDKLDINL----------DRIKQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 146 Vvda~~g~~~q-----t~e~i~~~~~~~vpiIvviNKiDl~~~~~----------~~~~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
|||+++....+ |...+... ..+.|+|+|+||+|+..... ..+..+ +...+...++ ..+|++
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~-~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~--e~~~~a~~~~-~~~~~E 166 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDY-CPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYE--QGCALAKQLG-AEVYLE 166 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHh-CCCCCEEEEEECcccccccchhhhhccccCCcCCHH--HHHHHHHHcC-CCEEEE
Confidence 99999854332 22222221 24689999999999854110 000000 0011111222 226999
Q ss_pred eeccCCC-ChhHHHHHHHHHH
Q psy1758 211 ISAKTGV-GINKLLENISLQA 230 (1527)
Q Consensus 211 iSAktg~-gI~eL~~~l~~~~ 230 (1527)
+||++|. ||+++|+.++...
T Consensus 167 tSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred ccCCcCCcCHHHHHHHHHHHH
Confidence 9999998 8999999997543
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-17 Score=180.20 Aligned_cols=159 Identities=21% Similarity=0.263 Sum_probs=111.3
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
+|+++|++|+|||||+++|....+...+.+++..+... .+..++ ..+.||||||++.|..++..+++.+|++|+|+|
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVH-DIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEE-EEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 69999999999999999999988876666655544432 233344 478999999999999999999999999999999
Q ss_pred CCCCCcHHHHH--HHHHHH--HcCCCEEEEEEcccCCcchhHHHH-HHH------hhhcccccccCCCCcEEEeeccCCC
Q psy1758 149 ADDGVMPQTRE--AIAHAK--ISGVPLIVAINKIDKLDINLDRIK-QDL------ISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 149 a~~g~~~qt~e--~i~~~~--~~~vpiIvviNKiDl~~~~~~~~~-~~l------~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+++....+..+ ++..+. ..+.|+++|+||+|+......... ... ...........+.++++++||++|.
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 160 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR 160 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence 99854333221 222222 247899999999999764321110 000 0000000111233689999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
|++++|+++....
T Consensus 161 ~v~e~f~~l~~~~ 173 (189)
T cd04134 161 GVNEAFTEAARVA 173 (189)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998554
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.7e-17 Score=182.91 Aligned_cols=161 Identities=29% Similarity=0.343 Sum_probs=122.7
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC----
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD---- 997 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d---- 997 (1527)
.--|||+|.||+|||||+|+|+++.-. ...+...+|...-.+-+..+++++.++||||...
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~Kis---------------IvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~ 70 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKIS---------------IVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHA 70 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceE---------------eecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchH
Confidence 346999999999999999999987322 2233344555555566677889999999999433
Q ss_pred ----chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 ----FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 ----f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
....+..++..+|.+++||||.+++.+..+++++.+...+.|+|+++||+|+.... ..+..+.+.+.......
T Consensus 71 l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~--~~l~~~~~~~~~~~~f~- 147 (298)
T COG1159 71 LGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPK--TVLLKLIAFLKKLLPFK- 147 (298)
T ss_pred HHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcH--HHHHHHHHHHHhhCCcc-
Confidence 34566677899999999999999999999999999988778999999999986543 21233333222222211
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.++++||++|. |++.|++.+.+++|.-
T Consensus 148 ----~ivpiSA~~g~----------n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 148 ----EIVPISALKGD----------NVDTLLEIIKEYLPEG 174 (298)
T ss_pred ----eEEEeeccccC----------CHHHHHHHHHHhCCCC
Confidence 58999999998 9999999999999863
|
|
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.7e-17 Score=177.78 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=109.5
Q ss_pred EecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC
Q psy1758 75 MGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG 152 (1527)
Q Consensus 75 vG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g 152 (1527)
+|++++|||||+.++....+...+.+++..+.....+..++ ..+.||||||+++|..++..+++.+|++|+|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999998887666666665566555555554 4788999999999999999999999999999999996
Q ss_pred CcHHHHHHH-HHHHH--cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 153 VMPQTREAI-AHAKI--SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 153 ~~~qt~e~i-~~~~~--~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
...+....| ..+.. .++|+++|+||+|+...........+. . ...++++++||++|.||+++|++|+..
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~------~--~~~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFH------R--KKNLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHH------H--HcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 544332222 22322 578999999999985422111001111 1 123689999999999999999999855
Q ss_pred H
Q psy1758 230 A 230 (1527)
Q Consensus 230 ~ 230 (1527)
.
T Consensus 153 i 153 (200)
T smart00176 153 L 153 (200)
T ss_pred H
Confidence 3
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O) | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-17 Score=156.18 Aligned_cols=78 Identities=27% Similarity=0.460 Sum_probs=75.3
Q ss_pred eeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1317 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1317 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|||++++|++|++|+|+|+++|++|||++.+++..+ ++++|++.+|+++++||+++|+++|+|+|+|++.|+||+|++
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKG-DEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecC-CEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 899999999999999999999999999999999864 789999999999999999999999999999999999999975
|
This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA. |
| >smart00838 EFG_C Elongation factor G C-terminus | Back alignment and domain information |
|---|
Probab=99.72 E-value=8e-18 Score=159.74 Aligned_cols=80 Identities=23% Similarity=0.387 Sum_probs=76.9
Q ss_pred EeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeec
Q psy1758 1315 LYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPF 1394 (1527)
Q Consensus 1315 llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~ 1394 (1527)
+||||++++|.+|++|+|.||++|++|||++.+++..+ ++++|+|.+|+++++||+++|+++|+|+|+|+++|+||+|+
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~-~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~~ 79 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRG-GAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEEV 79 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccC-CcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceEC
Confidence 58999999999999999999999999999999999754 68999999999999999999999999999999999999999
Q ss_pred c
Q psy1758 1395 Y 1395 (1527)
Q Consensus 1395 ~ 1395 (1527)
+
T Consensus 80 ~ 80 (85)
T smart00838 80 P 80 (85)
T ss_pred C
Confidence 7
|
This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold. |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.5e-17 Score=180.59 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=108.5
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAA 149 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda 149 (1527)
.+|+++|++|+|||||+++|....+.. ..+++..++ ....+....+.||||||++.|..++..+++.+|++|+|||+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~--~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dv 77 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAF--YLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDV 77 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEE--EEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEEC
Confidence 379999999999999999999988753 344444433 22334556799999999999999999999999999999999
Q ss_pred CCCCcHHHH-HHHHHHH---HcCCCEEEEEEcccCCcchh-----------------HHH----HHHHhhhcc----ccc
Q psy1758 150 DDGVMPQTR-EAIAHAK---ISGVPLIVAINKIDKLDINL-----------------DRI----KQDLISEQV----IPE 200 (1527)
Q Consensus 150 ~~g~~~qt~-e~i~~~~---~~~vpiIvviNKiDl~~~~~-----------------~~~----~~~l~~~~~----~~~ 200 (1527)
++....+.. ..|..+. ..++|+|+|+||+|+.+... ..+ ...+..... ..+
T Consensus 78 t~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~ 157 (220)
T cd04126 78 SNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDE 157 (220)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccc
Confidence 984332222 2222222 34689999999999965110 000 011111100 000
Q ss_pred ccC--CCCcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 201 EYG--GASPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 201 ~~~--~~~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
+.. ..++|+++||++|.||+++|+.++...
T Consensus 158 ~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 158 DLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred cccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 110 125899999999999999999998543
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=169.85 Aligned_cols=152 Identities=18% Similarity=0.197 Sum_probs=115.2
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||++++.+..+.....++++.+.....+.+++. .+.+|||||++.|..++...++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 37999999999999999999998887777777777777667777664 7889999999999999999999999999999
Q ss_pred eCCCCCcHHHHHHH-HHH---HHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQTREAI-AHA---KISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~qt~e~i-~~~---~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++....+....| ..+ ...++|+++|+||+|+..... .+....+. ... .++++++||++|.|+++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~------~~~--~~~~~e~Sa~~~~~i~~ 152 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFA------EEH--GLPFFETSAKTNTNVEE 152 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHH------HHc--CCeEEEEeCCCCCCHHH
Confidence 99984433322222 222 224789999999999865221 11111111 112 25799999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+++.|...
T Consensus 153 l~~~i~~~ 160 (164)
T smart00175 153 AFEELARE 160 (164)
T ss_pred HHHHHHHH
Confidence 99999754
|
Rab GTPases are implicated in vesicle trafficking. |
| >KOG1144|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-17 Score=199.72 Aligned_cols=226 Identities=23% Similarity=0.217 Sum_probs=160.4
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe------------------cC
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY------------------NG 984 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~------------------~~ 984 (1527)
+-+||+||+|.|||-|++.+-...-.... .-|||-....+.|.. +-
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqege----------------aggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kv 539 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGE----------------AGGITQQIGATYFPAENIREKTKELKKDAKKRLKV 539 (1064)
T ss_pred ceEEEeecccccchHHHHHhhcccccccc----------------ccceeeeccccccchHHHHHHHHHHHhhhhhhcCC
Confidence 46899999999999999999653111111 122332222222221 11
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCC-------CCChh--
Q psy1758 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS-------NARPE-- 1055 (1527)
Q Consensus 985 ~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~-------~a~~~-- 1055 (1527)
=-+.+||||||..|...-.|+.+.||.+|||||..+|+.+||.+.+++++..+.|+||.+||+|+. ++...
T Consensus 540 Pg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~ 619 (1064)
T KOG1144|consen 540 PGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEA 619 (1064)
T ss_pred CeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHH
Confidence 247899999999999999999999999999999999999999999999999999999999999984 22211
Q ss_pred ------hhHHHHHHHHhhh-------c--c------cccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1056 ------WVVDATFDLFDKL-------C--A------TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1056 ------~v~~~~~~~~~~l-------~--~------~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.+.+++...+..+ + + .+..--+.++++||.+|. ||.+|+-.|+++....
T Consensus 620 lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGe----------GipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 620 LKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGE----------GIPDLLLLLVQLTQKT 689 (1064)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCC----------CcHHHHHHHHHHHHHH
Confidence 2233333322211 1 0 001112568999999998 9999999888765322
Q ss_pred C---CCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEee
Q psy1758 1115 K---DNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFK 1176 (1527)
Q Consensus 1115 ~---~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~ 1176 (1527)
. -..-..+++.|..+-.-++.|.-.=.-+.+|.|+.||+|.+++. +| +....|..|.+.+
T Consensus 690 m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~-~G-pIvTtIRaLLtP~ 752 (1064)
T KOG1144|consen 690 MVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGL-QG-PIVTTIRALLTPQ 752 (1064)
T ss_pred HHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCC-CC-chhHHHHHhcCCc
Confidence 1 11234678888888888999988888889999999999999977 45 3445566665543
|
|
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.5e-17 Score=174.49 Aligned_cols=153 Identities=20% Similarity=0.228 Sum_probs=107.5
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAAD 150 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~ 150 (1527)
+|+++|++++|||||+++|....+. .+.+++..+. ..+...+..+.+|||||++.|..++..+++.+|++++|+|++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~--~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s 77 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNV--ETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSS 77 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeE--EEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCC
Confidence 4899999999999999999987654 2444443333 346677889999999999999999999999999999999998
Q ss_pred CCC-cHHHHHHHHHHH----HcCCCEEEEEEcccCCcc-hhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 151 DGV-MPQTREAIAHAK----ISGVPLIVAINKIDKLDI-NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 151 ~g~-~~qt~e~i~~~~----~~~vpiIvviNKiDl~~~-~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
+.. .....+.+..+. ..+.|+++|+||+|+... +.++....+ ..... ......+++++||++|.||+++|+
T Consensus 78 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~Sa~~g~gv~~~f~ 154 (169)
T cd04158 78 HRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELL-SLHKL--CCGRSWYIQGCDARSGMGLYEGLD 154 (169)
T ss_pred cHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHh-CCccc--cCCCcEEEEeCcCCCCCCHHHHHH
Confidence 842 122222222222 235799999999999653 222222211 11100 011234688999999999999999
Q ss_pred HHHHH
Q psy1758 225 NISLQ 229 (1527)
Q Consensus 225 ~l~~~ 229 (1527)
+|...
T Consensus 155 ~l~~~ 159 (169)
T cd04158 155 WLSRQ 159 (169)
T ss_pred HHHHH
Confidence 99743
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >KOG0080|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-17 Score=167.01 Aligned_cols=156 Identities=17% Similarity=0.134 Sum_probs=118.5
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
-..+|.++|.+|+|||||+-++....|......+|..|+....+..++. ++.+|||+|||+|+.++..+++.|.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 3478999999999999999999999998877778889998888877765 78899999999999999999999999999
Q ss_pred EEeCCCCCcHHHHHHHH----H-HHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 146 VVAADDGVMPQTREAIA----H-AKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 146 Vvda~~g~~~qt~e~i~----~-~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|||++........+.|. . +...++-.++|+||+|..........+-+. +.. ...+-|+++||++.+|++
T Consensus 90 VYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~k----fAr--~h~~LFiE~SAkt~~~V~ 163 (209)
T KOG0080|consen 90 VYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLK----FAR--KHRCLFIECSAKTRENVQ 163 (209)
T ss_pred EEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHH----HHH--hhCcEEEEcchhhhccHH
Confidence 99999854332223332 1 223355678999999975421111111111 111 123579999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
..|+.+++.
T Consensus 164 ~~FeelveK 172 (209)
T KOG0080|consen 164 CCFEELVEK 172 (209)
T ss_pred HHHHHHHHH
Confidence 999999754
|
|
| >cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-17 Score=155.66 Aligned_cols=78 Identities=29% Similarity=0.494 Sum_probs=75.0
Q ss_pred eeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1317 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1317 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|||++++|.+|++|+|+||++|++|||++.+++..+ ++++|++.+|+++++||+++|+++|+|+|+|+++|+||+|++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~-~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGE-DEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecC-CeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 899999999999999999999999999999999764 789999999999999999999999999999999999999974
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.6e-17 Score=189.83 Aligned_cols=262 Identities=23% Similarity=0.253 Sum_probs=181.1
Q ss_pred EEEEEEEEEEeCCe-E----EEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccc----------cccccChhH
Q psy1758 806 KIYKITIIDYTIPY-L----TLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLT----------LDKCLNIDT 870 (1527)
Q Consensus 806 ~i~~~~~~~~~~~~-~----~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~----------~~~a~~l~~ 870 (1527)
.|.+.-++.|..|+ | .+|++|-.|..+-..+-+.-.++| + |--.=|.|+ |.+|=-+.|
T Consensus 60 ~iDe~lvl~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~G--a-----R~AepGEFs~RAFLNgK~DLtqAEai~d 132 (454)
T COG0486 60 IIDEVLVLYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKLG--A-----RLAEPGEFSKRAFLNGKLDLTQAEAIAD 132 (454)
T ss_pred EeeeeeEEEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHcC--C-----eecCCCcchHHHHhcCCccHHHHHHHHH
Confidence 34455556677773 3 699999999999998888888887 3 334455554 333333334
Q ss_pred HHhhhh-----------------------hhhccccCcccccccccceeeecccccceeccC-cccc----------ccc
Q psy1758 871 IIKYSE-----------------------YERISSLIPIDILLSSFGIIYLSDLLSKRFLHG-QNLF----------LSD 916 (1527)
Q Consensus 871 l~~~~~-----------------------~~~~~~L~pie~~L~~lP~i~l~d~~~~~i~nG-~~i~----------lsq 916 (1527)
|..... ...+..+.-+|..+ +||..++++.....+... +.+. -..
T Consensus 133 LI~A~te~a~r~A~~~l~G~ls~~i~~lr~~li~~~a~vEa~I-Dfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g 211 (454)
T COG0486 133 LIDAKTEQAARIALRQLQGALSQLINELREALLELLAQVEANI-DFPEEDIEELVLEKIREKLEELIAELDELLATAKQG 211 (454)
T ss_pred HHhCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHheEeC-CCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 422110 00112233445455 788775544432222111 0000 012
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCC
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA 996 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~ 996 (1527)
.-..+..+++|+|.||+|||||+|+|++. |...+...+|+|.+.-...+..+|+.+.|+||+|.+
T Consensus 212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~---------------d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiR 276 (454)
T COG0486 212 KILREGLKVVIIGRPNVGKSSLLNALLGR---------------DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIR 276 (454)
T ss_pred hhhhcCceEEEECCCCCcHHHHHHHHhcC---------------CceEecCCCCCccceEEEEEEECCEEEEEEecCCcc
Confidence 23456779999999999999999999977 556667789999999999999999999999999998
Q ss_pred CchHHHHHH--------HHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh
Q psy1758 997 DFGGEVERI--------LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 1068 (1527)
Q Consensus 997 df~~ev~~~--------l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l 1068 (1527)
+-...+++. +..||.+++|+|++++...+....+. +...+.|+++|+||+|+......... +.
T Consensus 277 et~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~--------~~ 347 (454)
T COG0486 277 ETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE--------KL 347 (454)
T ss_pred cCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccchh--------hc
Confidence 877776653 79999999999999986666665555 55668899999999999765421111 01
Q ss_pred cccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1069 ~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
....|++.+||++|. |++.|.++|.+.+..-
T Consensus 348 -----~~~~~~i~iSa~t~~----------Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 348 -----ANGDAIISISAKTGE----------GLDALREAIKQLFGKG 378 (454)
T ss_pred -----cCCCceEEEEecCcc----------CHHHHHHHHHHHHhhc
Confidence 113378999999998 9999999998877644
|
|
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=170.23 Aligned_cols=154 Identities=23% Similarity=0.288 Sum_probs=112.7
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|.+..+.....++++.+.....+.+++. .+.+|||||++.|..++..+++.+|++|+|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 37999999999999999999998876666666666666556666665 5678999999999999999999999999999
Q ss_pred eCCCCCcHHHHHHHH-----HHH---HcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 148 AADDGVMPQTREAIA-----HAK---ISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 148 da~~g~~~qt~e~i~-----~~~---~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
|+++....+....|. .+. ..++|+++|+||+|+..... .+....+.. . .+..+++++||++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~-~~~~~~~~~Sa~~~~ 153 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ------S-NGNIPYFETSAKEAI 153 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH------H-cCCceEEEEECCCCC
Confidence 999854322222221 111 12789999999999974211 111111111 1 123589999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
|++++++++....
T Consensus 154 gv~~l~~~i~~~~ 166 (172)
T cd01862 154 NVEQAFETIARKA 166 (172)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999997543
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=188.16 Aligned_cols=168 Identities=25% Similarity=0.298 Sum_probs=133.8
Q ss_pred hhhhhhcccCcccccccCCCEEEEEecCCCChhHHHHHHHccc-cccccCCceeEEEEEEEEEeCCeEEEEEeCCCh---
Q psy1758 51 SFLLNEYNKNITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTN-VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGH--- 126 (1527)
Q Consensus 51 ~~~~~~l~~~~~~~~~~r~~~V~IvG~~~~GKTSLl~~L~~~~-~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~--- 126 (1527)
..+...+.........+.+.+|+|+|.||+|||||+|+|.+.+ .+++..+|+|+|+....+..+|.++.++||+|-
T Consensus 199 ~~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet 278 (454)
T COG0486 199 AELDELLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRET 278 (454)
T ss_pred HHHHHHHHhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccC
Confidence 3344455566777888999999999999999999999999877 589999999999999999999999999999992
Q ss_pred ----hhHHHHHH-hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccc
Q psy1758 127 ----EAFTAMRA-RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEE 201 (1527)
Q Consensus 127 ----e~f~~~~~-~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~ 201 (1527)
|+..-.+. ..+..||++++|+|++.....+....+. +...+.|+++|.||+|+......... .
T Consensus 279 ~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~-----------~ 346 (454)
T COG0486 279 DDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE-----------K 346 (454)
T ss_pred ccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccchh-----------h
Confidence 33333333 4568999999999999976666666666 45667899999999999874321110 1
Q ss_pred cCCCCcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 202 YGGASPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 202 ~~~~~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
+....+++.+||++|+|++.|.+.|....
T Consensus 347 ~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 347 LANGDAIISISAKTGEGLDALREAIKQLF 375 (454)
T ss_pred ccCCCceEEEEecCccCHHHHHHHHHHHH
Confidence 12234799999999999999999997554
|
|
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.9e-17 Score=176.51 Aligned_cols=152 Identities=24% Similarity=0.280 Sum_probs=107.7
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
+|+++|.+|+|||||+++|....+.....++++... ...+..++. .+.||||||+++|..++..+++.+|++++|+|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 489999999999999999998887655555443332 223445554 58899999999999999999999999999999
Q ss_pred CCCCCcHH----HHHHHHHHHH---cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 149 ADDGVMPQ----TREAIAHAKI---SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 149 a~~g~~~q----t~e~i~~~~~---~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+++..... |...+..... .++|+++|+||+|+.......... . .. ....+ .++++++||++|.|+++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~-~-~~--~~~~~--~~~~~e~SAk~~~~v~~ 153 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEE-G-AA--LARRL--GCEFIEASAKTNVNVER 153 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHH-H-HH--HHHHh--CCEEEEecCCCCCCHHH
Confidence 98854322 2222322222 468999999999986422111100 0 00 11112 24899999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|+.+...
T Consensus 154 l~~~l~~~ 161 (190)
T cd04144 154 AFYTLVRA 161 (190)
T ss_pred HHHHHHHH
Confidence 99999854
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=174.63 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=109.5
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
+..+|+++|++|+|||||++++....+.. ..+++..+. ..+...+..+.+|||||++.|..++..+++.+|++|+|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~--~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~ 92 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV--ETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVV 92 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce--EEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 45789999999999999999998766643 344444333 345567789999999999999999999999999999999
Q ss_pred eCCCCC-cHHHHHHHHHH-H---HcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGV-MPQTREAIAHA-K---ISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~-~~qt~e~i~~~-~---~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++.. .....+.+... . ..++|++||+||+|+.+.. ..++...+. ........++++++||++|.|+++
T Consensus 93 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~----~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 93 DSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLG----LHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred eCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhC----CCcccCCcEEEEeeeCCCCCCHHH
Confidence 998732 12222233322 1 2368999999999986532 222222221 111111234678999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+|++|..
T Consensus 169 ~~~~l~~ 175 (182)
T PTZ00133 169 GLDWLSA 175 (182)
T ss_pred HHHHHHH
Confidence 9999974
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=176.12 Aligned_cols=156 Identities=26% Similarity=0.393 Sum_probs=111.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCC-----------hhhHHHHHHhh
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG-----------HEAFTAMRARG 136 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG-----------~e~f~~~~~~~ 136 (1527)
+.++|+++|++|+|||||+++|.+..+..+..+|+|++..... +. .+++||||| ++.|..++..+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYD--WG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEe--ec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 4578999999999999999999998887777888888765433 33 689999999 57777665544
Q ss_pred c----cccCEEEEEEeCCCCC-----------cHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccc
Q psy1758 137 A----KVTDIVVLVVAADDGV-----------MPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEE 201 (1527)
Q Consensus 137 ~----~~aD~~IlVvda~~g~-----------~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~ 201 (1527)
+ ..+|++++|+|+++.. .+.+.+++..+...++|+++|+||+|+.+.. .+...++.........
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~ 162 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR-DEVLDEIAERLGLYPP 162 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH-HHHHHHHHHHhcCCcc
Confidence 3 4578999999987521 2234556666667799999999999997543 1122222221111001
Q ss_pred cCC-CCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 202 YGG-ASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 202 ~~~-~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
+.. ..+++++||++| |+++++++|...
T Consensus 163 ~~~~~~~~~~~SA~~g-gi~~l~~~l~~~ 190 (201)
T PRK04213 163 WRQWQDIIAPISAKKG-GIEELKEAIRKR 190 (201)
T ss_pred ccccCCcEEEEecccC-CHHHHHHHHHHh
Confidence 110 137899999999 999999999754
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.8e-17 Score=171.94 Aligned_cols=146 Identities=22% Similarity=0.279 Sum_probs=112.5
Q ss_pred EEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH------HHHhhc--cccCEEEE
Q psy1758 74 IMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA------MRARGA--KVTDIVVL 145 (1527)
Q Consensus 74 IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~------~~~~~~--~~aD~~Il 145 (1527)
++|++|+|||||++++.+..+..++.+++|.+.....+.+++..+.||||||++.|.. ++..++ ..+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999998877778889999988888888888999999999987653 344455 48999999
Q ss_pred EEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHH-HHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 146 VVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR-IKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 146 Vvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
|+|+++. .+....+..+...++|+++|+||+|+.+..... ....+.. .+ ..+++++||++|.|++++++
T Consensus 81 v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~------~~--~~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 81 VVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSE------LL--GVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred EeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHH------hh--CCCeEEEEccCCCCHHHHHH
Confidence 9999873 334445555666789999999999997532111 1111111 11 25899999999999999999
Q ss_pred HHHHH
Q psy1758 225 NISLQ 229 (1527)
Q Consensus 225 ~l~~~ 229 (1527)
.+...
T Consensus 151 ~l~~~ 155 (158)
T cd01879 151 AIAEL 155 (158)
T ss_pred HHHHH
Confidence 98654
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=171.78 Aligned_cols=153 Identities=20% Similarity=0.178 Sum_probs=109.7
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAAD 150 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~ 150 (1527)
+|+++|.+|+|||||+++|.+. +.....+++.. ....+...+..+++|||||++.|..++..+++.+|++|+|+|++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~--~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s 77 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGF--TPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSS 77 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccc--eEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECC
Confidence 4899999999999999999876 43333333332 23456677889999999999999999999999999999999999
Q ss_pred CCCcH-HHHHHHHHHHH----cCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCC------CC
Q psy1758 151 DGVMP-QTREAIAHAKI----SGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTG------VG 218 (1527)
Q Consensus 151 ~g~~~-qt~e~i~~~~~----~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg------~g 218 (1527)
+.... .....+..+.. .++|+++|+||+|+.+.. ..+....+.... .....+..++++++||++| .|
T Consensus 78 ~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~-~~~~~~~~~~~~~~Sa~~g~~~~~~~g 156 (167)
T cd04161 78 DDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEK-LVNENKSLCHIEPCSAIEGLGKKIDPS 156 (167)
T ss_pred chhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCccc-ccCCCCceEEEEEeEceeCCCCccccC
Confidence 84322 22333333322 478999999999997654 333333222111 1112233468999999998 89
Q ss_pred hhHHHHHHH
Q psy1758 219 INKLLENIS 227 (1527)
Q Consensus 219 I~eL~~~l~ 227 (1527)
+++.|+||.
T Consensus 157 ~~~~~~wl~ 165 (167)
T cd04161 157 IVEGLRWLL 165 (167)
T ss_pred HHHHHHHHh
Confidence 999999985
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=170.09 Aligned_cols=153 Identities=16% Similarity=0.154 Sum_probs=115.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+.++|+++|++|+|||||++++....+.....++++.+.....+.+.+. .+.+|||||++.|...+..+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 3478999999999999999999987776666666776776666777764 57889999999999999999999999999
Q ss_pred EEeCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|++++... .|...+......++|+++|+||+|+.+... ......+.. . ...+++++||++|.|+
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~------~--~~~~~~~~Sa~~~~gv 157 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSD------A--QDMYYLETSAKESDNV 157 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHH------H--cCCeEEEeeCCCCCCH
Confidence 9999875432 333333444445789999999999864221 111111111 1 1257999999999999
Q ss_pred hHHHHHHHH
Q psy1758 220 NKLLENISL 228 (1527)
Q Consensus 220 ~eL~~~l~~ 228 (1527)
+++|+.+..
T Consensus 158 ~~l~~~i~~ 166 (169)
T cd04114 158 EKLFLDLAC 166 (169)
T ss_pred HHHHHHHHH
Confidence 999999974
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=171.56 Aligned_cols=152 Identities=16% Similarity=0.190 Sum_probs=109.1
Q ss_pred CEEEEEecCCCChhHHHHHHHcc--ccccccCCceeEEEEEEEEEeC---CeEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKT--NVVFSEAGGITQHIGAYNVVTN---HGSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~--~~~~~~~~giT~~~~~~~~~~~---~~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+|+++|.+++|||||+++|... .+...+.+++..++....+... ...+.+|||||++.|..++...+..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 37999999999999999999865 4555666666566554444433 247899999999999999999999999999
Q ss_pred EEEeCCCCCcHHHHH-HHHHHHH--cCCCEEEEEEcccCCcchh-HHHH-HHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 145 LVVAADDGVMPQTRE-AIAHAKI--SGVPLIVAINKIDKLDINL-DRIK-QDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 145 lVvda~~g~~~qt~e-~i~~~~~--~~vpiIvviNKiDl~~~~~-~~~~-~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
+|+|+++.......+ ++..+.. .++|+++|+||+|+.+... .... ..+. ..+ .++++++||++|.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~~~Sa~~~~gi 152 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFA------QAN--QLKFFKTSALRGVGY 152 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHH------HHc--CCeEEEEeCCCCCCh
Confidence 999999843322222 2222222 4689999999999865321 1111 1111 111 257999999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
+++|+.+...
T Consensus 153 ~~l~~~l~~~ 162 (164)
T cd04101 153 EEPFESLARA 162 (164)
T ss_pred HHHHHHHHHH
Confidence 9999999754
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-16 Score=169.68 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=114.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHH-HHHHhhccccCEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFT-AMRARGAKVTDIVV 144 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~-~~~~~~~~~aD~~I 144 (1527)
|..+|+++|++|+|||||++++....+.....++++.+.....+.+++ ..+.+|||||+++|. .++..+++.+|+++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 346899999999999999999998887666666666666666666666 478899999999997 56788889999999
Q ss_pred EEEeCCCCCcHHHHHHHH-HHH----HcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccC--
Q psy1758 145 LVVAADDGVMPQTREAIA-HAK----ISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKT-- 215 (1527)
Q Consensus 145 lVvda~~g~~~qt~e~i~-~~~----~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAkt-- 215 (1527)
+|+|+++....+....|. .+. ..++|+++|+||+|+..... ......+. ..+ .++++++||++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~e~Sa~~~~ 152 (170)
T cd04115 81 FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA------DAH--SMPLFETSAKDPS 152 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH------HHc--CCcEEEEeccCCc
Confidence 999999865444443332 222 24689999999999864321 11111121 111 26899999999
Q ss_pred -CCChhHHHHHHHHH
Q psy1758 216 -GVGINKLLENISLQ 229 (1527)
Q Consensus 216 -g~gI~eL~~~l~~~ 229 (1527)
+.|++++|..++..
T Consensus 153 ~~~~i~~~f~~l~~~ 167 (170)
T cd04115 153 ENDHVEAIFMTLAHK 167 (170)
T ss_pred CCCCHHHHHHHHHHH
Confidence 88999999988643
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=206.79 Aligned_cols=162 Identities=22% Similarity=0.277 Sum_probs=127.6
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCCh----------hhHHHHHH-
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGH----------EAFTAMRA- 134 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~----------e~f~~~~~- 134 (1527)
...++|+++|++|+|||||+++|.+... ..++.+|+|++.....+.+++..+.||||||+ +.|..++.
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 3458999999999999999999998875 56778899999988888889999999999994 44555443
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
.+++.+|++++|+|++++...+....+..+...++|+++|+||+|+.+............... ......+++++||+
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l---~~~~~~~ii~iSAk 604 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEF---DRVTWARRVNLSAK 604 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhc---cCCCCCCEEEEECC
Confidence 457899999999999999999998888888888999999999999976332111111111111 11234688999999
Q ss_pred CCCChhHHHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQAE 231 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~~~ 231 (1527)
+|.|+++|++.+.....
T Consensus 605 tg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 605 TGWHTNRLAPAMQEALE 621 (712)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999986544
|
|
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=173.42 Aligned_cols=152 Identities=23% Similarity=0.214 Sum_probs=108.8
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
..+|+++|++|+|||||++++....+.. ..++++. ....+.+++..+.+|||||++.|...+..+++.+|++++|+|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D 91 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGS--NVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVID 91 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCcccc--ceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEE
Confidence 4689999999999999999998877643 3333333 334556677899999999999999999999999999999999
Q ss_pred CCCCCcH-HHHHHHHHH-H---HcCCCEEEEEEcccCCcc-hhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 149 ADDGVMP-QTREAIAHA-K---ISGVPLIVAINKIDKLDI-NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 149 a~~g~~~-qt~e~i~~~-~---~~~vpiIvviNKiDl~~~-~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
+++.... ...+.+..+ . ..++|+++++||+|+... +.++....+..... . ...++++++||++|.||+++
T Consensus 92 ~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~--~--~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 92 STDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSI--R--DHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccc--c--CCceEEEecccCCCCCHHHH
Confidence 9984321 112222222 1 246899999999998753 22222222211110 1 12357999999999999999
Q ss_pred HHHHH
Q psy1758 223 LENIS 227 (1527)
Q Consensus 223 ~~~l~ 227 (1527)
|++|.
T Consensus 168 ~~~l~ 172 (174)
T cd04153 168 LDWIA 172 (174)
T ss_pred HHHHh
Confidence 99985
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-16 Score=172.84 Aligned_cols=157 Identities=17% Similarity=0.200 Sum_probs=110.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC-C--eEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN-H--GSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~-~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+|+++|++|+|||||+++|....+...+.+++..++... +... + ..+.||||||+++|..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 4799999999999999999999888766666665554332 3333 3 3688999999999999999999999999999
Q ss_pred EeCCCCCcHHHHH-HH-HHHH--HcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQTRE-AI-AHAK--ISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~qt~e-~i-~~~~--~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++....+... .| .... ..++|+++|+||+|+....... +...... .....+ +..+++++||++|.|++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~--~~~~~~-~~~~~~e~Sa~~~~~v~ 156 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAE--SVAKKQ-GAFAYLECSAKTMENVE 156 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHH--HHHHHc-CCcEEEEccCCCCCCHH
Confidence 9999854332221 12 1222 2478999999999986532100 0000000 011111 12379999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
++|+.+....
T Consensus 157 ~~f~~l~~~~ 166 (187)
T cd04132 157 EVFDTAIEEA 166 (187)
T ss_pred HHHHHHHHHH
Confidence 9999998654
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.7e-17 Score=173.54 Aligned_cols=157 Identities=19% Similarity=0.214 Sum_probs=109.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||++++....+...+.+++. +.....+..++. .+.+|||||++.|..++...++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 3799999999999999999999887655555443 333334555554 5779999999999999999999999999999
Q ss_pred eCCCCCcH-----HHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHH-HHhh-------hcccccccCCCCcEEEeecc
Q psy1758 148 AADDGVMP-----QTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQ-DLIS-------EQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 148 da~~g~~~-----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~-~l~~-------~~~~~~~~~~~~~v~~iSAk 214 (1527)
|+++.... .|.+.+... ..+.|+++|+||+|+.+........ .... ........ +..+++++||+
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~ 157 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEI-GAHCYVECSAL 157 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc-CCCEEEEecCC
Confidence 99985332 233333322 4679999999999986532211100 0000 00001111 23479999999
Q ss_pred CCCChhHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~ 229 (1527)
+|.|++++|+.++..
T Consensus 158 ~~~gi~~~f~~~~~~ 172 (174)
T cd04135 158 TQKGLKTVFDEAILA 172 (174)
T ss_pred cCCCHHHHHHHHHHH
Confidence 999999999998753
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=175.84 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=114.7
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.++|+++|++|+|||||+++|....+...+.++++.++....+..++. .+.||||||++.|..++..+++.+|++++|
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv 85 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 85 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence 478999999999999999999998887666677766666666666654 688999999999999999999999999999
Q ss_pred EeCCCCCcHHHH-HHHHHHH--HcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 147 VAADDGVMPQTR-EAIAHAK--ISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 147 vda~~g~~~qt~-e~i~~~~--~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+|+++....+.. .++..+. ....|+++|+||+|+...... .....+. ..+ ..+++++||++|.||++
T Consensus 86 ~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 86 YDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFA------GQM--GISLFETSAKENINVEE 157 (199)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHH------HHc--CCEEEEEECCCCcCHHH
Confidence 999984322222 2222222 235899999999998653211 1111111 111 25899999999999999
Q ss_pred HHHHHHHHH
Q psy1758 222 LLENISLQA 230 (1527)
Q Consensus 222 L~~~l~~~~ 230 (1527)
+|++|....
T Consensus 158 lf~~l~~~~ 166 (199)
T cd04110 158 MFNCITELV 166 (199)
T ss_pred HHHHHHHHH
Confidence 999998654
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.3e-17 Score=171.18 Aligned_cols=151 Identities=23% Similarity=0.285 Sum_probs=107.7
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAAD 150 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~ 150 (1527)
+|+++|++|+|||||++++.+.... ...+ |.......+.+.+..+.+|||||++.|...+...+..+|++++|+|++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~ 77 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSS 77 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCC--CcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECC
Confidence 4899999999999999999988732 2222 222333445566789999999999999999999999999999999999
Q ss_pred CCC-cHHHHHHHHH----HHHcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 151 DGV-MPQTREAIAH----AKISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 151 ~g~-~~qt~e~i~~----~~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
+.. ..+....+.. ....+.|+++|+||+|+.... .++....+.... .....++++++||++|.|++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 78 DRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEK----ILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhh----ccCCcEEEEEeeCCCCCCHHHHHH
Confidence 852 1222222222 223578999999999997643 222222211110 112346899999999999999999
Q ss_pred HHHH
Q psy1758 225 NISL 228 (1527)
Q Consensus 225 ~l~~ 228 (1527)
.|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 8863
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=172.07 Aligned_cols=157 Identities=18% Similarity=0.225 Sum_probs=108.4
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|.+|+|||||+.++....+...+.+++. +.....+..++. .+.||||||++.|..++..+++.+|++|+|+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 5799999999999999999999888766666543 222233445553 6889999999999999999999999999999
Q ss_pred eCCCCCcHHHH-HHH-HHHH--HcCCCEEEEEEcccCCcchh--HHHHHH----H--hhhcccccccCCCCcEEEeeccC
Q psy1758 148 AADDGVMPQTR-EAI-AHAK--ISGVPLIVAINKIDKLDINL--DRIKQD----L--ISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 148 da~~g~~~qt~-e~i-~~~~--~~~vpiIvviNKiDl~~~~~--~~~~~~----l--~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
|+++....+.. ..| ..+. ..++|+++|+||+|+.+... +..... + .+.......+ +.++++++||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-GAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc-CCcEEEEecccc
Confidence 99984433332 112 2222 24689999999999964211 111000 0 0000011112 235899999999
Q ss_pred CCChhHHHHHHHH
Q psy1758 216 GVGINKLLENISL 228 (1527)
Q Consensus 216 g~gI~eL~~~l~~ 228 (1527)
|.|++++|+.+..
T Consensus 160 ~~~i~~~f~~l~~ 172 (174)
T cd01871 160 QKGLKTVFDEAIR 172 (174)
T ss_pred cCCHHHHHHHHHH
Confidence 9999999998863
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-16 Score=173.32 Aligned_cols=153 Identities=20% Similarity=0.211 Sum_probs=112.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
++|+++|++|+|||||+++|....+...+.++++.+.....+..++. .+.+|||||++.|..++...++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 47999999999999999999998887656666666665555555554 6789999999999999999999999999999
Q ss_pred eCCCCCcHH----HHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQ----TREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~q----t~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++..... |...+......+.|+++|+||+|+.+... ......+.. .. .++++++||++|.|+++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~evSa~~~~~i~~ 152 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCD------SL--NIPFFETSAKQSINVEE 152 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHH------Hc--CCeEEEEeCCCCCCHHH
Confidence 999843222 22222222234578999999999874221 111111111 11 24899999999999999
Q ss_pred HHHHHHHHH
Q psy1758 222 LLENISLQA 230 (1527)
Q Consensus 222 L~~~l~~~~ 230 (1527)
+|+.|....
T Consensus 153 ~f~~l~~~~ 161 (188)
T cd04125 153 AFILLVKLI 161 (188)
T ss_pred HHHHHHHHH
Confidence 999998654
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=170.88 Aligned_cols=150 Identities=23% Similarity=0.244 Sum_probs=107.5
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||++++..+.+.....+++ .+.....+..++. .+.||||||++.|..++..+++.+|++++|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCch-hheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 579999999999999999999888765554433 2333344555554 5778999999999999999999999999999
Q ss_pred eCCCCCcHH-HHHHHHHHH----HcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 148 AADDGVMPQ-TREAIAHAK----ISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 148 da~~g~~~q-t~e~i~~~~----~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|+++...-+ ..+++..+. ..++|+++|+||+|+....... ....+ ...+ .++++++||++|.|++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~------~~~~--~~~~~~~Sa~~~~~v~ 152 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRAL------AEEW--GCPFMETSAKSKTMVN 152 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHH------HHHh--CCEEEEecCCCCCCHH
Confidence 999843222 122222222 2478999999999985421111 11111 1122 2589999999999999
Q ss_pred HHHHHHHH
Q psy1758 221 KLLENISL 228 (1527)
Q Consensus 221 eL~~~l~~ 228 (1527)
++|+++..
T Consensus 153 ~l~~~l~~ 160 (163)
T cd04176 153 ELFAEIVR 160 (163)
T ss_pred HHHHHHHH
Confidence 99999864
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-16 Score=167.87 Aligned_cols=152 Identities=18% Similarity=0.201 Sum_probs=108.8
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|.+..+.....+.+........+.+++ ..+.+|||||++.|...+..+++.+|++++|+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 5799999999999999999999887654444444444444445554 47889999999999999999999999999999
Q ss_pred eCCCCCcHH-HHHHHHHHHH---cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQ-TREAIAHAKI---SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~q-t~e~i~~~~~---~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++...-+ ...++..+.. .++|+++++||+|+..... ......+.. .++ ++++++||++|.|+.+
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~------~~~--~~~~~~Sa~~~~~v~~ 153 (163)
T cd01860 82 DITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYAD------ENG--LLFFETSAKTGENVNE 153 (163)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHH------HcC--CEEEEEECCCCCCHHH
Confidence 999743221 1222222222 4588999999999874211 111111111 112 5799999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
++++|...
T Consensus 154 l~~~l~~~ 161 (163)
T cd01860 154 LFTEIAKK 161 (163)
T ss_pred HHHHHHHH
Confidence 99999754
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=170.51 Aligned_cols=151 Identities=22% Similarity=0.265 Sum_probs=104.5
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC-CeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN-HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAA 149 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~-~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda 149 (1527)
+|+++|++|+|||||+++|....+.. ..+++..+. ..+... ...+.+|||||++.|..++..++..+|++|+|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 48999999999999999999887643 233333332 233333 45899999999999999999999999999999999
Q ss_pred CCCCc-HHHHHHHHHH----HHcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHH
Q psy1758 150 DDGVM-PQTREAIAHA----KISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223 (1527)
Q Consensus 150 ~~g~~-~qt~e~i~~~----~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~ 223 (1527)
++... ......+... ...+.|+++|+||+|+.... ..++...+. ..... ....++++++||++|.|++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~-~~~~~--~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFK-LKKYC--SDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcC-CcccC--CCCcEEEEecccccCCChHHHH
Confidence 98431 1222222221 22578999999999996432 222222111 11111 1123579999999999999999
Q ss_pred HHHH
Q psy1758 224 ENIS 227 (1527)
Q Consensus 224 ~~l~ 227 (1527)
+.|.
T Consensus 155 ~~i~ 158 (160)
T cd04156 155 RKLA 158 (160)
T ss_pred HHHh
Confidence 9885
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=172.00 Aligned_cols=151 Identities=19% Similarity=0.218 Sum_probs=109.2
Q ss_pred EEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCC
Q psy1758 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADD 151 (1527)
Q Consensus 72 V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~ 151 (1527)
|+++|++|+|||||+++|.+..+...+.+++..+ ...+...+.++.+|||||++.|..++..+++.+|++++|+|+++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~ 79 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN--SVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc--eEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC
Confidence 7999999999999999999887765555554433 34456677799999999999999999999999999999999998
Q ss_pred CCcH-HHHHHHHHHH--HcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccC------CCChhH
Q psy1758 152 GVMP-QTREAIAHAK--ISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKT------GVGINK 221 (1527)
Q Consensus 152 g~~~-qt~e~i~~~~--~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAkt------g~gI~e 221 (1527)
.... .....+..+. ..++|+++|+||+|+..... ..+...+. ...... ...++++++||++ ++||++
T Consensus 80 ~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~-~~~~~~--~~~~~~~~~Sa~~~~s~~~~~~v~~ 156 (164)
T cd04162 80 SERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELE-LEPIAR--GRRWILQGTSLDDDGSPSRMEAVKD 156 (164)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhC-ChhhcC--CCceEEEEeeecCCCChhHHHHHHH
Confidence 4322 2222333332 25799999999999876432 22221111 111111 1235789999988 999999
Q ss_pred HHHHHH
Q psy1758 222 LLENIS 227 (1527)
Q Consensus 222 L~~~l~ 227 (1527)
+|+.++
T Consensus 157 ~~~~~~ 162 (164)
T cd04162 157 LLSQLI 162 (164)
T ss_pred HHHHHh
Confidence 999875
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=179.71 Aligned_cols=154 Identities=16% Similarity=0.195 Sum_probs=117.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
...+|+++|++|+|||||+++|.+..+.....++++.++....+..++. .+.||||||++.|..++..+++.+|++|+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 3468999999999999999999998887777777777776666766664 78899999999999999999999999999
Q ss_pred EEeCCCCCcHHHHH----HHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQTRE----AIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt~e----~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+... .+......++|+++|+||+|+..... .+....+.. .+ .++++++||++|.|+
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~------~~--~~~~~e~SA~~g~~v 162 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAE------KE--GLSFLETSALEATNV 162 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHH------Hc--CCEEEEEeCCCCCCH
Confidence 99999854433322 22222234789999999999854211 111111111 11 358999999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
+++|+.|...
T Consensus 163 ~~lf~~l~~~ 172 (216)
T PLN03110 163 EKAFQTILLE 172 (216)
T ss_pred HHHHHHHHHH
Confidence 9999999754
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=171.28 Aligned_cols=151 Identities=25% Similarity=0.277 Sum_probs=106.1
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe-EEEEEeCCChhh-------HHHHHHhhccccCE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG-SITFLDTPGHEA-------FTAMRARGAKVTDI 142 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~-~i~~iDTPG~e~-------f~~~~~~~~~~aD~ 142 (1527)
.|+++|++|||||||+++|.+.....+..+++|.+.....+.+++. .+.||||||+.+ +.....+.+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 4899999999999999999987766666677777776666777776 999999999631 22233344567999
Q ss_pred EEEEEeCCCC-CcHHHHH-HHHHHHH-----cCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 143 VVLVVAADDG-VMPQTRE-AIAHAKI-----SGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 143 ~IlVvda~~g-~~~qt~e-~i~~~~~-----~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
+++|+|+++. ...+... +...+.. .+.|+++|+||+|+.+.... ........ .. ...+++++||+
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~------~~-~~~~~~~~Sa~ 154 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK------EL-WGKPVFPISAL 154 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh------hC-CCCCEEEEecC
Confidence 9999999986 2322222 2222222 36899999999998653321 11111111 10 23589999999
Q ss_pred CCCChhHHHHHHHH
Q psy1758 215 TGVGINKLLENISL 228 (1527)
Q Consensus 215 tg~gI~eL~~~l~~ 228 (1527)
++.|++++++++..
T Consensus 155 ~~~gi~~l~~~i~~ 168 (170)
T cd01898 155 TGEGLDELLRKLAE 168 (170)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999999864
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-16 Score=168.01 Aligned_cols=157 Identities=23% Similarity=0.386 Sum_probs=119.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhh----------HHHH-HHh
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA----------FTAM-RAR 135 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~----------f~~~-~~~ 135 (1527)
++++|+++|++|+|||||+++|.+... .....+++|.+.....+..++..+.+|||||+.. |..+ ...
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 357899999999999999999988764 4566678888877777778888899999999632 3222 234
Q ss_pred hccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch---hHHHHHHHhhhcccccccCCCCcEEEee
Q psy1758 136 GAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN---LDRIKQDLISEQVIPEEYGGASPFISIS 212 (1527)
Q Consensus 136 ~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~---~~~~~~~l~~~~~~~~~~~~~~~v~~iS 212 (1527)
.+..+|++++|+|+.++...+....+..+...+.|+++++||+|+.+.. .+.....+..... .....+++++|
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~S 156 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLP----FLDYAPIVFIS 156 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcc----cccCCceEEEe
Confidence 5678999999999999888777777777777789999999999997642 2222222222111 11236899999
Q ss_pred ccCCCChhHHHHHHHH
Q psy1758 213 AKTGVGINKLLENISL 228 (1527)
Q Consensus 213 Aktg~gI~eL~~~l~~ 228 (1527)
|+++.|++++++.+..
T Consensus 157 a~~~~~i~~~~~~l~~ 172 (174)
T cd01895 157 ALTGQGVDKLFDAIDE 172 (174)
T ss_pred ccCCCCHHHHHHHHHH
Confidence 9999999999998853
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-17 Score=171.09 Aligned_cols=146 Identities=26% Similarity=0.415 Sum_probs=107.6
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH---
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG--- 1000 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~--- 1000 (1527)
+||++|.||+|||||+|+|++.... .-.-+|.|++...+.+.+++..+.|+||||.-++..
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~----------------v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ 65 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQK----------------VGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSE 65 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEE----------------EEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCce----------------ecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCc
Confidence 6999999999999999999876311 122379999999999999999999999999654331
Q ss_pred -H-H-HHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCCh-hhhHHHHHHHHhhhcccccc
Q psy1758 1001 -E-V-ERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARP-EWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1001 -e-v-~~~l--~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~-~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
| + ..++ ...|++++|+||+. ..+...+..++.++|+|+++|+||+|.....- .--.+.+.+ .
T Consensus 66 ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~----------~ 133 (156)
T PF02421_consen 66 EERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSE----------R 133 (156)
T ss_dssp HHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHH----------H
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHH----------H
Confidence 1 1 2233 57999999999987 46677778888899999999999999753221 111223322 2
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHH
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAI 1107 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i 1107 (1527)
+.+|++++||++|. |+++|+++|
T Consensus 134 Lg~pvi~~sa~~~~----------g~~~L~~~I 156 (156)
T PF02421_consen 134 LGVPVIPVSARTGE----------GIDELKDAI 156 (156)
T ss_dssp HTS-EEEEBTTTTB----------THHHHHHHH
T ss_pred hCCCEEEEEeCCCc----------CHHHHHhhC
Confidence 35799999999998 999999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=174.48 Aligned_cols=156 Identities=17% Similarity=0.231 Sum_probs=110.1
Q ss_pred CEEEEEecCCCChhHHHHHHHcccccc-ccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVF-SEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~-~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+|+++|++|+|||||+++|....+.. .+.+++..++....+..++. .+.||||||++.|..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 379999999999999999999988765 34444444444445566665 567999999999999998899999999999
Q ss_pred EeCCCCCcHHH-HHHHHHHHH--cCCCEEEEEEcccCCcchh--HHHH-HHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQT-REAIAHAKI--SGVPLIVAINKIDKLDINL--DRIK-QDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~qt-~e~i~~~~~--~~vpiIvviNKiDl~~~~~--~~~~-~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++....+. ..++..+.. .+.|+++|+||+|+..... ..+. .+... ....+ ..+++++||++|.|++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~---~~~~~--~~~~~~~Sa~~~~gv~ 155 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD---FADEI--KAQHFETSSKTGQNVD 155 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHH---HHHHc--CCeEEEEeCCCCCCHH
Confidence 99988433222 122233332 3689999999999864321 0100 01100 01111 2579999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
+||+.+....
T Consensus 156 ~l~~~i~~~~ 165 (193)
T cd04118 156 ELFQKVAEDF 165 (193)
T ss_pred HHHHHHHHHH
Confidence 9999998654
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=174.87 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=107.8
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhH--------HHHHHhhccc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAF--------TAMRARGAKV 139 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f--------~~~~~~~~~~ 139 (1527)
.+|+++|.+|+|||||++++.+..+...+.++++.+.....+.+++. .+.||||||++.| ......+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 37999999999999999999998887667777766654445556664 6789999997543 2224456789
Q ss_pred cCEEEEEEeCCCCCcHHHHHH-HHHHH------HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEee
Q psy1758 140 TDIVVLVVAADDGVMPQTREA-IAHAK------ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISIS 212 (1527)
Q Consensus 140 aD~~IlVvda~~g~~~qt~e~-i~~~~------~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iS 212 (1527)
+|++|+|+|+++....+.... +..+. ..++|+++|+||+|+........ ..... ..... ..++++++|
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~-~~~~~--~~~~~--~~~~~~e~S 155 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPR-HVLSV--LVRKS--WKCGYLECS 155 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccH-HHHHH--HHHHh--cCCcEEEec
Confidence 999999999998543322222 22221 35689999999999965321111 11100 00111 236899999
Q ss_pred ccCCCChhHHHHHHHHHH
Q psy1758 213 AKTGVGINKLLENISLQA 230 (1527)
Q Consensus 213 Aktg~gI~eL~~~l~~~~ 230 (1527)
|++|.||++||+.++...
T Consensus 156 ak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 156 AKYNWHILLLFKELLISA 173 (198)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998543
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=169.97 Aligned_cols=155 Identities=18% Similarity=0.207 Sum_probs=104.9
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEE-EEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIG-AYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAA 149 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~-~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda 149 (1527)
+|+++|++|+|||||+++|....+... .+.+..+.. ...+...+.++.+|||||++.+...+...++.+|++++|+|+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 799999999999999999999887543 222222211 112222445789999999999888888888999999999999
Q ss_pred CCCCcHHHH-HHH-HHHH--HcCCCEEEEEEcccCCcchhHH-HHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 150 DDGVMPQTR-EAI-AHAK--ISGVPLIVAINKIDKLDINLDR-IKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 150 ~~g~~~qt~-e~i-~~~~--~~~vpiIvviNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
++....+.. +.| ..++ ..+.|+++|+||+|+.+..... ....+.. ....+....+++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLP---IMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHH---HHHHHhcccEEEEeccccccCHHHHHH
Confidence 985443332 112 2222 2478999999999997643211 1111110 011122223799999999999999999
Q ss_pred HHHHH
Q psy1758 225 NISLQ 229 (1527)
Q Consensus 225 ~l~~~ 229 (1527)
.+...
T Consensus 158 ~~~~~ 162 (166)
T cd01893 158 YAQKA 162 (166)
T ss_pred HHHHH
Confidence 88654
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-16 Score=167.28 Aligned_cols=151 Identities=21% Similarity=0.198 Sum_probs=109.1
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|.+..+.....+.++.+.....+.+++ ..+.+|||||++.|..+....++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 4799999999999999999998887554555555444444444444 47899999999999999999999999999999
Q ss_pred eCCCCCcHHHHHHH-H----HHHHcCCCEEEEEEcccCCcchhHH-HHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQTREAI-A----HAKISGVPLIVAINKIDKLDINLDR-IKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~qt~e~i-~----~~~~~~vpiIvviNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++....+....| . .....++|+++|+||+|+....... ....+.. . ..++++++||++|.|+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~------~--~~~~~~~~Sa~~~~gi~~ 152 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR------K--HNMLFIETSAKTRDGVQQ 152 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH------H--cCCEEEEEecCCCCCHHH
Confidence 99874433322222 1 1223578999999999997322111 1111111 1 135899999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+++.+..
T Consensus 153 ~~~~~~~ 159 (161)
T cd01863 153 AFEELVE 159 (161)
T ss_pred HHHHHHH
Confidence 9998863
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=171.52 Aligned_cols=161 Identities=19% Similarity=0.242 Sum_probs=112.2
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
||+++|++|+|||||+++|+........ . ...+...|+......+.+++..+++|||||+.+|...+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~--~----------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKG--L----------PPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccC--C----------cccccCCccccceEEEEECCEEEEEEECCCChhhHHHHH
Confidence 6899999999999999999865322100 0 001123344445566788899999999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1004 RILSMVDNVLLLIDAVEGP-MPQTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
..++.+|++++|+|+++.- ..+....+..+. ..++|+++++||+|++.... .+++.+.+...........+|
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALS---VEEIKEVFQDKAEEIGRRDCL 145 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCC---HHHHHHHhccccccccCCceE
Confidence 9999999999999998642 222233333332 24799999999999876432 223333333222112223568
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
++++||++|. |+++++++|.+
T Consensus 146 ~~~~Sa~~g~----------gv~e~~~~l~~ 166 (167)
T cd04160 146 VLPVSALEGT----------GVREGIEWLVE 166 (167)
T ss_pred EEEeeCCCCc----------CHHHHHHHHhc
Confidence 9999999998 99999999864
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-16 Score=171.60 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=112.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+.++|+++|.+|+|||||++++.+..+.. ..+ |.......+..++.++.+|||||++.+..++..++..+|++++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v 91 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQP--TQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYL 91 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCC--ccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 456899999999999999999999876532 222 33334455566788999999999999999999999999999999
Q ss_pred EeCCCCCc-HHHHHHHHHH----HHcCCCEEEEEEcccCCcc-hhHHHHHHHhhhcccc---cccCCCCcEEEeeccCCC
Q psy1758 147 VAADDGVM-PQTREAIAHA----KISGVPLIVAINKIDKLDI-NLDRIKQDLISEQVIP---EEYGGASPFISISAKTGV 217 (1527)
Q Consensus 147 vda~~g~~-~qt~e~i~~~----~~~~vpiIvviNKiDl~~~-~~~~~~~~l~~~~~~~---~~~~~~~~v~~iSAktg~ 217 (1527)
+|+++... ....+.+..+ ...++|+++|+||+|+... +.++....+....... ........++++||++|.
T Consensus 92 vD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~ 171 (184)
T smart00178 92 VDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRM 171 (184)
T ss_pred EECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCC
Confidence 99987421 2222223222 2357899999999998653 3333333332111100 001134579999999999
Q ss_pred ChhHHHHHHHH
Q psy1758 218 GINKLLENISL 228 (1527)
Q Consensus 218 gI~eL~~~l~~ 228 (1527)
|+++++++|..
T Consensus 172 g~~~~~~wl~~ 182 (184)
T smart00178 172 GYGEGFKWLSQ 182 (184)
T ss_pred ChHHHHHHHHh
Confidence 99999999963
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-16 Score=175.76 Aligned_cols=158 Identities=13% Similarity=0.163 Sum_probs=112.0
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++++|||||+.+|....+...+.|++..++. ..+..++. .+.||||+|++.|..++..+++.+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 57999999999999999999998887777776655443 34455554 6788999999999999999999999999999
Q ss_pred eCCCCCcHHHH-HHHHH-H--HHcCCCEEEEEEcccCCcchhHHHHHHHhh---------hcccccccCCCCcEEEeecc
Q psy1758 148 AADDGVMPQTR-EAIAH-A--KISGVPLIVAINKIDKLDINLDRIKQDLIS---------EQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 148 da~~g~~~qt~-e~i~~-~--~~~~vpiIvviNKiDl~~~~~~~~~~~l~~---------~~~~~~~~~~~~~v~~iSAk 214 (1527)
|+++....+.. ..|.. . ...++|+|||+||+|+..... ....+.. +........+.++|+++||+
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~--~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLA--TLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchh--hhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 99984322222 22221 1 225789999999999965211 0111100 00001111233589999999
Q ss_pred CCCC-hhHHHHHHHHHH
Q psy1758 215 TGVG-INKLLENISLQA 230 (1527)
Q Consensus 215 tg~g-I~eL~~~l~~~~ 230 (1527)
++.| |+++|+......
T Consensus 159 ~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 159 SSERSVRDVFHVATVAS 175 (222)
T ss_pred cCCcCHHHHHHHHHHHH
Confidence 9985 999999987653
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=179.23 Aligned_cols=156 Identities=19% Similarity=0.219 Sum_probs=110.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|.+|+|||||+++|....+...+.+++. +.....+..++ ..+.||||||++.|..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 3699999999999999999999888766555543 44444555555 46889999999999999988899999999999
Q ss_pred eCCCCCcH----HHHHHHHHHH---------HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 148 AADDGVMP----QTREAIAHAK---------ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 148 da~~g~~~----qt~e~i~~~~---------~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
|+++.... +|.+.+...+ ..++|+|+|+||+|+....... ..++..... . ...++++++||+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~-~~ei~~~~~--~--~~~~~~~evSAk 154 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQ-RDEVEQLVG--G--DENCAYFEVSAK 154 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccC-HHHHHHHHH--h--cCCCEEEEEeCC
Confidence 99984322 2222222221 1368999999999996421100 111111000 0 113579999999
Q ss_pred CCCChhHHHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQAE 231 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~~~ 231 (1527)
+|.|++++|++|...+.
T Consensus 155 tg~gI~elf~~L~~~~~ 171 (247)
T cd04143 155 KNSNLDEMFRALFSLAK 171 (247)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 99999999999986543
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=182.32 Aligned_cols=157 Identities=24% Similarity=0.199 Sum_probs=113.3
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc-----
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF----- 998 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df----- 998 (1527)
.|+++|++|+|||||+|+|++.... ......++|.....+....++.++.||||||+.+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~---------------~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~ 66 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKIS---------------ITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLN 66 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEe---------------ecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHH
Confidence 5899999999999999999876221 11223455554444444556788999999997643
Q ss_pred ---hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 999 ---GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 999 ---~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
...+..++..+|++++|+|++++...+ ..++..+...+.|.++|+||+|+.. .+...+.+..... . .
T Consensus 67 ~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~-~------~ 136 (270)
T TIGR00436 67 RLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKF--KDKLLPLIDKYAI-L------E 136 (270)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCC--HHHHHHHHHHHHh-h------c
Confidence 223456789999999999999875554 5666777778999999999999863 3333333322211 1 1
Q ss_pred CC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCC
Q psy1758 1076 DF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 1115 (1527)
Q Consensus 1076 ~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 1115 (1527)
.+ +++++||++|. |++.|++.+.+.+|+.+
T Consensus 137 ~~~~v~~iSA~~g~----------gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 137 DFKDIVPISALTGD----------NTSFLAAFIEVHLPEGP 167 (270)
T ss_pred CCCceEEEecCCCC----------CHHHHHHHHHHhCCCCC
Confidence 22 78999999998 99999999999997643
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-16 Score=165.24 Aligned_cols=150 Identities=21% Similarity=0.270 Sum_probs=110.6
Q ss_pred EEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCC
Q psy1758 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADD 151 (1527)
Q Consensus 72 V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~ 151 (1527)
|+++|++|+|||||+++|.+..+.....++++.+.. .+..++..+.+|||||++.|..++..+++.+|++++|+|+++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 79 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAAD 79 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCC
Confidence 899999999999999999998887766666555443 345666789999999999999999999999999999999987
Q ss_pred CCc-HHHHHHHHHHH----HcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHH
Q psy1758 152 GVM-PQTREAIAHAK----ISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLEN 225 (1527)
Q Consensus 152 g~~-~qt~e~i~~~~----~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~ 225 (1527)
... .+..+.+..+. ..++|+++|+||+|+.+.... .....+. ........++++++||++|.|+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 80 RTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMN----LKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred HHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhC----cccccCCceEEEEEEeccCCChHHHHHH
Confidence 322 22223333322 257899999999998754221 1111111 1111123468999999999999999999
Q ss_pred HH
Q psy1758 226 IS 227 (1527)
Q Consensus 226 l~ 227 (1527)
|.
T Consensus 156 l~ 157 (159)
T cd04159 156 LI 157 (159)
T ss_pred Hh
Confidence 85
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >KOG0093|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-16 Score=156.70 Aligned_cols=154 Identities=16% Similarity=0.154 Sum_probs=120.5
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
-.++.|+|+..+||||++.++....|......+..+++....+--... ++++|||+|+|.|+.....++++++++||+
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 348999999999999999999999998888888888877766544333 789999999999999999999999999999
Q ss_pred EeCCCCCc----HHHHHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVM----PQTREAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~----~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|.++... ..|.-.++.....+.|+|+|+||||+.+...- +.-..+.. ++| ..+|++|||.+.|++
T Consensus 101 yDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~------~LG--fefFEtSaK~NinVk 172 (193)
T KOG0093|consen 101 YDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLAD------QLG--FEFFETSAKENINVK 172 (193)
T ss_pred EecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHH------HhC--hHHhhhcccccccHH
Confidence 99998443 33444445555678999999999999763221 11112221 222 379999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
++|+.++...
T Consensus 173 ~~Fe~lv~~I 182 (193)
T KOG0093|consen 173 QVFERLVDII 182 (193)
T ss_pred HHHHHHHHHH
Confidence 9999997543
|
|
| >cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-17 Score=152.96 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=74.8
Q ss_pred eeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecC-CcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1317 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINE-KERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1317 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~-~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|||++++|.+|++|+|+|+++|++|||++.+++..+ +++++|++.+|+++++||+++|+++|+|+|+|+++|+||+|++
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 899999999999999999999999999999999863 3469999999999999999999999999999999999999973
|
Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome. |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.9e-16 Score=165.26 Aligned_cols=151 Identities=21% Similarity=0.206 Sum_probs=111.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|....+.....++++.......+...+. .+.+|||||++.|..++..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 37999999999999999999988876655556655555555555554 6889999999999999999999999999999
Q ss_pred eCCCCCcHHH----HHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQT----REAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~qt----~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|++++...+. .+.+......++|+++|+||+|+..... ......+.. .+ .++++++||++|.|+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~------~~--~~~~~~~s~~~~~gi~~ 152 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAK------SV--GAKHFETSAKTGKGIEE 152 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHH------Hc--CCEEEEEeCCCCCCHHH
Confidence 9998543222 2223333334689999999999874221 111111111 11 25789999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+++++..
T Consensus 153 ~~~~l~~ 159 (162)
T cd04123 153 LFLSLAK 159 (162)
T ss_pred HHHHHHH
Confidence 9999864
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-16 Score=166.86 Aligned_cols=149 Identities=28% Similarity=0.324 Sum_probs=115.2
Q ss_pred EEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH-----
Q psy1758 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG----- 1000 (1527)
Q Consensus 926 aIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~----- 1000 (1527)
|++|++|+|||||+++|+..... ..+...++|.......+.+.++.+++|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 65 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA---------------IVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKE 65 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE---------------eecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHH
Confidence 58999999999999999865211 1122356777777777888899999999999998654
Q ss_pred ---HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1001 ---EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1001 ---ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
.+...++.+|++++|+|+.++...++..+++.+...+.|+++|+||+|+.+++.. ...+..++. .
T Consensus 66 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~------~~~~~~~~~------~ 133 (157)
T cd01894 66 IREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE------AAEFYSLGF------G 133 (157)
T ss_pred HHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH------HHHHHhcCC------C
Confidence 5556789999999999999888777777888888889999999999999765322 111212211 1
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+++++||++|. |++.+++.+.+++
T Consensus 134 ~~~~~Sa~~~~----------gv~~l~~~l~~~~ 157 (157)
T cd01894 134 EPIPISAEHGR----------GIGDLLDAILELL 157 (157)
T ss_pred CeEEEecccCC----------CHHHHHHHHHhhC
Confidence 58999999998 9999999998753
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-16 Score=168.92 Aligned_cols=154 Identities=19% Similarity=0.268 Sum_probs=107.7
Q ss_pred EEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEEeC
Q psy1758 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAA 149 (1527)
Q Consensus 72 V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda 149 (1527)
|+++|++|+|||||++++....+...+.+++.... ...+..++. .+.+|||||++.|..++...++.+|++|+|+|+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999888766666554433 234455554 588999999999999999999999999999999
Q ss_pred CCCCcHHHH-H-HHHHHH--HcCCCEEEEEEcccCCcchhHHHHHHHhh----------hcccccccCCCCcEEEeeccC
Q psy1758 150 DDGVMPQTR-E-AIAHAK--ISGVPLIVAINKIDKLDINLDRIKQDLIS----------EQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 150 ~~g~~~qt~-e-~i~~~~--~~~vpiIvviNKiDl~~~~~~~~~~~l~~----------~~~~~~~~~~~~~v~~iSAkt 215 (1527)
++....+.. . ++..+. ..++|+++|+||+|+...... . ..+.. .......+ +..+++++||++
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~ 156 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKST-L-RELSKQKQEPVTYEQGEALAKRI-GAVKYLECSALT 156 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhh-h-hhhhcccCCCccHHHHHHHHHHc-CCcEEEEecCCC
Confidence 984322211 1 122222 247999999999998652110 0 00000 00011112 234799999999
Q ss_pred CCChhHHHHHHHHH
Q psy1758 216 GVGINKLLENISLQ 229 (1527)
Q Consensus 216 g~gI~eL~~~l~~~ 229 (1527)
|.|++++|+.+...
T Consensus 157 ~~~v~~lf~~l~~~ 170 (174)
T smart00174 157 QEGVREVFEEAIRA 170 (174)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999754
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-16 Score=174.88 Aligned_cols=152 Identities=17% Similarity=0.160 Sum_probs=111.7
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC-C--eEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN-H--GSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~-~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+|+++|++|+|||||+++|.+..+.....++++.++....+... + ..+.+|||||++.|..++..+++.+|++++|
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv 82 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLV 82 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEE
Confidence 689999999999999999999988766666677667666555553 3 3788999999999999999999999999999
Q ss_pred EeCCCCCcH----HHHHHHHHH-HHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 147 VAADDGVMP----QTREAIAHA-KISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 147 vda~~g~~~----qt~e~i~~~-~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
+|+++.... +|...+... ....+|+++++||+|+..... ......+. ..++ ++++++||++|.|+
T Consensus 83 ~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~------~~~~--~~~~e~Sak~g~~v 154 (211)
T cd04111 83 FDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLA------KDLG--MKYIETSARTGDNV 154 (211)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHH------HHhC--CEEEEEeCCCCCCH
Confidence 999984321 222222111 123467899999999865211 11111111 1222 68999999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
+++|+.|...
T Consensus 155 ~e~f~~l~~~ 164 (211)
T cd04111 155 EEAFELLTQE 164 (211)
T ss_pred HHHHHHHHHH
Confidence 9999999854
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=195.73 Aligned_cols=150 Identities=27% Similarity=0.343 Sum_probs=119.9
Q ss_pred ccccCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHH--------HH
Q psy1758 64 ESLVRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAM--------RA 134 (1527)
Q Consensus 64 ~~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~--------~~ 134 (1527)
.....+++|+++|++|+|||||+|+|.+... ..++.+|+|++.....+.+++.++.+|||||++++... ..
T Consensus 210 ~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~ 289 (449)
T PRK05291 210 EILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSR 289 (449)
T ss_pred HHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHH
Confidence 4455678999999999999999999998775 56788999999998889999999999999998654322 23
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
..+..+|++++|+|++++...+..+.|.. ..+.|+++|+||+|+.+..... .....+++++||+
T Consensus 290 ~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~--------------~~~~~~~i~iSAk 353 (449)
T PRK05291 290 EAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE--------------EENGKPVIRISAK 353 (449)
T ss_pred HHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh--------------hccCCceEEEEee
Confidence 46789999999999998776665555544 4578999999999996532111 1112479999999
Q ss_pred CCCChhHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~ 229 (1527)
+|.|+++|++.|...
T Consensus 354 tg~GI~~L~~~L~~~ 368 (449)
T PRK05291 354 TGEGIDELREAIKEL 368 (449)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999754
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-16 Score=177.65 Aligned_cols=111 Identities=32% Similarity=0.455 Sum_probs=94.6
Q ss_pred EEEEEecCCCChhHHHHHHHccccc----------------cccCCceeEEEEEEEEEeC----------CeEEEEEeCC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVV----------------FSEAGGITQHIGAYNVVTN----------HGSITFLDTP 124 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~----------------~~~~~giT~~~~~~~~~~~----------~~~i~~iDTP 124 (1527)
+|+++||++||||||+++|...... .....|+|+......+.+. +..++|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6999999999999999998654311 1223477777665555444 5689999999
Q ss_pred ChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCC
Q psy1758 125 GHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL 181 (1527)
Q Consensus 125 G~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~ 181 (1527)
||++|...+..+++.+|++++|+|+.++...++.+++..+...++|+|+|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 999999999999999999999999999999999999999988899999999999986
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-16 Score=168.16 Aligned_cols=154 Identities=23% Similarity=0.270 Sum_probs=108.7
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|.+|+|||||++++.+..+.....+.+. +.....+.+++. .+.+|||||+++|..++..+++.+|++++|+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE-DSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcch-heEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 4799999999999999999998887555444333 222334445543 7789999999999999999999999999999
Q ss_pred eCCCCCcHH----HHHHHHH-HHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 148 AADDGVMPQ----TREAIAH-AKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 148 da~~g~~~q----t~e~i~~-~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
|+++....+ +.+.+.. ....++|+++++||+|+.......... ... ....++ ..+++++||++|.|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~-~~~---~~~~~~-~~~~~~~SA~~~~~i~~~ 155 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSRED-GVS---LSQQWG-NVPFYETSARKRTNVDEV 155 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHH-HHH---HHHHcC-CceEEEeeCCCCCCHHHH
Confidence 999843222 2222222 223478999999999986532111111 000 111222 368999999999999999
Q ss_pred HHHHHHH
Q psy1758 223 LENISLQ 229 (1527)
Q Consensus 223 ~~~l~~~ 229 (1527)
|+++..+
T Consensus 156 f~~i~~~ 162 (168)
T cd04177 156 FIDLVRQ 162 (168)
T ss_pred HHHHHHH
Confidence 9999754
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-16 Score=187.40 Aligned_cols=160 Identities=24% Similarity=0.240 Sum_probs=119.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch-
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG- 999 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~- 999 (1527)
+..+|+++|++|+|||||+++|++.... ......++|.......+.+++.+++||||||+.+..
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~---------------ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~ 115 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLS---------------IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKG 115 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCcee---------------eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcc
Confidence 4468999999999999999999865211 122345666666666778889999999999975432
Q ss_pred -------HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 1000 -------GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 1000 -------~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
.....++..||++|+|+|+.++....+..++..+...+.|+|+|+||+|+.+.. ..++.+.+....
T Consensus 116 ~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~----~~~~~~~l~~~~--- 188 (339)
T PRK15494 116 SLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKY----LNDIKAFLTENH--- 188 (339)
T ss_pred cHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcccc----HHHHHHHHHhcC---
Confidence 222345789999999999998887777777777777888999999999986532 233333332211
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
...+++++||++|. |+++|++++.+++|..
T Consensus 189 --~~~~i~~iSAktg~----------gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 189 --PDSLLFPISALSGK----------NIDGLLEYITSKAKIS 218 (339)
T ss_pred --CCcEEEEEeccCcc----------CHHHHHHHHHHhCCCC
Confidence 12368999999998 9999999999998753
|
|
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.1e-16 Score=161.89 Aligned_cols=150 Identities=21% Similarity=0.238 Sum_probs=111.1
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
++|+++|++++|||||++++.+..+...+.++.+.+.....+..++ ..+.+|||||++.|.......++.+|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 4799999999999999999999888766666666666666666544 47889999999999999999999999999999
Q ss_pred eCCCCCcHHHH-HHHHHHHH---cCCCEEEEEEcccCCcch--hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQTR-EAIAHAKI---SGVPLIVAINKIDKLDIN--LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~qt~-e~i~~~~~---~~vpiIvviNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++....+.. .++..+.. .+.|+++++||+|+.... ..+....+.. . ..++++++||++|.|+++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~--~~~~~~~~sa~~~~~i~~ 152 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAK------E--NGLLFFETSAKTGENVEE 152 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHH------H--cCCeEEEEecCCCCCHHH
Confidence 99983322222 22223333 358999999999996211 1111111111 1 236899999999999999
Q ss_pred HHHHHH
Q psy1758 222 LLENIS 227 (1527)
Q Consensus 222 L~~~l~ 227 (1527)
++++|.
T Consensus 153 ~~~~i~ 158 (159)
T cd00154 153 LFQSLA 158 (159)
T ss_pred HHHHHh
Confidence 999874
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.3e-16 Score=173.41 Aligned_cols=148 Identities=27% Similarity=0.358 Sum_probs=108.0
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe-EEEEEeCCCh---------hhHHHHHHhhcc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG-SITFLDTPGH---------EAFTAMRARGAK 138 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~-~i~~iDTPG~---------e~f~~~~~~~~~ 138 (1527)
-++|+++|++|||||||++++.+..+.....++.|.+.....+.+.+. .+.||||||+ +.|.... ..+.
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~ 119 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEVA 119 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHHh
Confidence 479999999999999999999998765555566677666666666665 8999999997 2233322 3467
Q ss_pred ccCEEEEEEeCCCCCcHHHH----HHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 139 VTDIVVLVVAADDGVMPQTR----EAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 139 ~aD~~IlVvda~~g~~~qt~----e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
.+|++++|+|+++....... +.+..+...+.|+++|+||+|+....... .. ......+++++||+
T Consensus 120 ~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~--------~~~~~~~~~~~Sa~ 188 (204)
T cd01878 120 EADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ER--------LEAGRPDAVFISAK 188 (204)
T ss_pred cCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HH--------hhcCCCceEEEEcC
Confidence 89999999999986544332 33333333468999999999997643211 00 11234589999999
Q ss_pred CCCChhHHHHHHHH
Q psy1758 215 TGVGINKLLENISL 228 (1527)
Q Consensus 215 tg~gI~eL~~~l~~ 228 (1527)
+|.|+++++++|..
T Consensus 189 ~~~gi~~l~~~L~~ 202 (204)
T cd01878 189 TGEGLDELLEAIEE 202 (204)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999998853
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.3e-16 Score=171.72 Aligned_cols=154 Identities=19% Similarity=0.175 Sum_probs=110.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
...+|+++|++|+|||||+++|....+. ...++++.+.....+..++ ..+.||||||++.|..++..+++.+|++|+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4578999999999999999999987763 3344555555545555554 478899999999999999999999999999
Q ss_pred EEeCCCCCcHHHHH-HHHH-HH----HcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 146 VVAADDGVMPQTRE-AIAH-AK----ISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 146 Vvda~~g~~~qt~e-~i~~-~~----~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
|+|+++....+... .|.. +. ..+.|+++|+||+|+....... ....+.. .. .++++++||++|.
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~------~~--~~~~~e~SAk~~~ 163 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK------EH--GCLFLECSAKTRE 163 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH------Hc--CCEEEEEeCCCCC
Confidence 99999843333222 2221 11 2357899999999986532111 1111111 11 2579999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
|++++|+.|....
T Consensus 164 ~v~~l~~~l~~~~ 176 (211)
T PLN03118 164 NVEQCFEELALKI 176 (211)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998654
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.2e-16 Score=185.40 Aligned_cols=147 Identities=28% Similarity=0.381 Sum_probs=112.5
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEe-CCeEEEEEeCCCh---------hhHHHHHHhhcc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT-NHGSITFLDTPGH---------EAFTAMRARGAK 138 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~-~~~~i~~iDTPG~---------e~f~~~~~~~~~ 138 (1527)
.++|+++|++|+|||||+|+|++..+.....+++|.+.....+.+ ++.++.||||||. +.|.... ..+.
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~ 267 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVR 267 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHHH
Confidence 489999999999999999999998877777889999998888888 4679999999996 4555443 3578
Q ss_pred ccCEEEEEEeCCCCCcHHHH----HHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 139 VTDIVVLVVAADDGVMPQTR----EAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 139 ~aD~~IlVvda~~g~~~qt~----e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
.||++++|+|+++....+.. +.+..+...+.|+++|+||+|+.+.. .. .... ....+++++||+
T Consensus 268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~--~v-~~~~---------~~~~~~i~iSAk 335 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP--RI-ERLE---------EGYPEAVFVSAK 335 (351)
T ss_pred hCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH--hH-HHHH---------hCCCCEEEEEcc
Confidence 99999999999986544332 33333333478999999999996521 11 1110 012368999999
Q ss_pred CCCChhHHHHHHHH
Q psy1758 215 TGVGINKLLENISL 228 (1527)
Q Consensus 215 tg~gI~eL~~~l~~ 228 (1527)
+|.|+++|++.|..
T Consensus 336 tg~GI~eL~~~I~~ 349 (351)
T TIGR03156 336 TGEGLDLLLEAIAE 349 (351)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999998853
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-16 Score=173.63 Aligned_cols=156 Identities=24% Similarity=0.276 Sum_probs=108.4
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
+|+++|++|+|||||+++|....+...+.+++ .+.....+.+++ ..+.||||||++.|..++..++..+|++++|+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTV-EEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCch-hhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 48999999999999999999887754433332 334444555556 478899999999999999999999999999999
Q ss_pred CCCCCcHHHH----HHHHH-HHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHH
Q psy1758 149 ADDGVMPQTR----EAIAH-AKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223 (1527)
Q Consensus 149 a~~g~~~qt~----e~i~~-~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~ 223 (1527)
+++....+.. ..+.. ....++|+++|+||+|+............... ....+ ..+++++||++|.|++++|
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~--~~~~~--~~~~~~~Sa~~g~gv~~l~ 155 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALST--VELDW--NCGFVETSAKDNENVLEVF 155 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHH--HHhhc--CCcEEEecCCCCCCHHHHH
Confidence 9984332222 11211 12257999999999998652110001111100 00111 2579999999999999999
Q ss_pred HHHHHHHH
Q psy1758 224 ENISLQAE 231 (1527)
Q Consensus 224 ~~l~~~~~ 231 (1527)
+++.....
T Consensus 156 ~~l~~~~~ 163 (198)
T cd04147 156 KELLRQAN 163 (198)
T ss_pred HHHHHHhh
Confidence 99986543
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.6e-16 Score=168.06 Aligned_cols=155 Identities=21% Similarity=0.282 Sum_probs=108.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+..+|+++|++|+|||||++++.+..+.. ..+ |.......+.+.+..+.+|||||+..|...+..+++.+|++++|
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~--t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 88 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITP--TQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYV 88 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCC--CCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 346889999999999999999999875522 112 22222345556788999999999999999999999999999999
Q ss_pred EeCCCCCc-HHHHHHH----HHHHHcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVM-PQTREAI----AHAKISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~-~qt~e~i----~~~~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++... ......+ ......++|+++++||+|+.... .......+. .........+++++||++|+|++
T Consensus 89 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~----~~~~~~~~~~~~~~Sa~~~~gi~ 164 (173)
T cd04155 89 IDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALN----LHDLRDRTWHIQACSAKTGEGLQ 164 (173)
T ss_pred EeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcC----CcccCCCeEEEEEeECCCCCCHH
Confidence 99987321 1222222 22234579999999999986533 222222211 11111122468899999999999
Q ss_pred HHHHHHHH
Q psy1758 221 KLLENISL 228 (1527)
Q Consensus 221 eL~~~l~~ 228 (1527)
+++++|+.
T Consensus 165 ~~~~~l~~ 172 (173)
T cd04155 165 EGMNWVCK 172 (173)
T ss_pred HHHHHHhc
Confidence 99999863
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.1e-16 Score=164.54 Aligned_cols=151 Identities=24% Similarity=0.269 Sum_probs=107.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|.+|+|||||++++....+.....+++. +........++ ..+.+|||||++.|..++..+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 3799999999999999999998877654444433 32233334444 36889999999999999999999999999999
Q ss_pred eCCCCCc----HHHHHHHHHH-HHcCCCEEEEEEcccCCcch--hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 148 AADDGVM----PQTREAIAHA-KISGVPLIVAINKIDKLDIN--LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 148 da~~g~~----~qt~e~i~~~-~~~~vpiIvviNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|+++... ..+...+... ...++|+++|+||+|+.... ......... .+++ .+++++||++|.|++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~------~~~~--~~~~~~Sa~~~~gi~ 151 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA------RQWG--VPYVETSAKTRQNVE 151 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH------HHhC--CeEEEeeCCCCCCHH
Confidence 9987321 2233333222 23579999999999996521 111111111 1122 589999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
++|+.+..+
T Consensus 152 ~l~~~l~~~ 160 (164)
T cd04139 152 KAFYDLVRE 160 (164)
T ss_pred HHHHHHHHH
Confidence 999999754
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >KOG0086|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-16 Score=156.38 Aligned_cols=154 Identities=17% Similarity=0.118 Sum_probs=117.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
.-.++.++|+.|.|||+|+.++....+......++.++++...++.+++ ++++|||+|||+|++....+++.|-+++|
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 3467999999999999999999999987777778888888888887776 78999999999999999999999999999
Q ss_pred EEeCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 146 VVAADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 146 Vvda~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+|+++.... .|..-++.+...++-+|+++||.|+........ +....+..+ ....+.++||+||+|+++
T Consensus 88 VYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~Vtf---lEAs~FaqE---nel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTF---LEASRFAQE---NELMFLETSALTGENVEE 161 (214)
T ss_pred EEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhH---HHHHhhhcc---cceeeeeecccccccHHH
Confidence 9999984432 233333444445666899999999965322111 111111111 123688999999999999
Q ss_pred HHHHHH
Q psy1758 222 LLENIS 227 (1527)
Q Consensus 222 L~~~l~ 227 (1527)
.|-...
T Consensus 162 aFl~c~ 167 (214)
T KOG0086|consen 162 AFLKCA 167 (214)
T ss_pred HHHHHH
Confidence 886554
|
|
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.3e-16 Score=167.95 Aligned_cols=156 Identities=22% Similarity=0.276 Sum_probs=107.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|.+..+...+.+++.... ...+..++. .+.+|||||++.|..++..++..+|++++|+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5799999999999999999999887665555444332 223444444 6789999999999998888899999999999
Q ss_pred eCCCCCcHHHH-HHH-HHHH--HcCCCEEEEEEcccCCcchhHHHHHHHhhh----------cccccccCCCCcEEEeec
Q psy1758 148 AADDGVMPQTR-EAI-AHAK--ISGVPLIVAINKIDKLDINLDRIKQDLISE----------QVIPEEYGGASPFISISA 213 (1527)
Q Consensus 148 da~~g~~~qt~-e~i-~~~~--~~~vpiIvviNKiDl~~~~~~~~~~~l~~~----------~~~~~~~~~~~~v~~iSA 213 (1527)
|+++....+.. +.| ..+. ..++|+++|+||+|+.+..... ..+... ...... .+..+++++||
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~i~~~~~~~v~~~~~~~~~~~-~~~~~~~~~Sa 157 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTR--RELAKMKQEPVKPEEGRDMANK-IGAFGYMECSA 157 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhh--hhhhhccCCCccHHHHHHHHHH-cCCcEEEEecc
Confidence 99974322111 111 1222 2478999999999986532110 001000 000011 12358999999
Q ss_pred cCCCChhHHHHHHHHH
Q psy1758 214 KTGVGINKLLENISLQ 229 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~ 229 (1527)
++|.|++++|+.+...
T Consensus 158 ~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 158 KTKEGVREVFEMATRA 173 (175)
T ss_pred ccCcCHHHHHHHHHHH
Confidence 9999999999999754
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.1e-16 Score=167.61 Aligned_cols=148 Identities=21% Similarity=0.322 Sum_probs=109.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc--ccccCCceeEEEEEEEEEeCCeEEEEEeCCCh----------hhHHHHHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV--VFSEAGGITQHIGAYNVVTNHGSITFLDTPGH----------EAFTAMRA 134 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~--~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~----------e~f~~~~~ 134 (1527)
.+.++|+++|++|+|||||+++|.+..+ ..+..++.|++...+.. + ..+.||||||+ +.|..+..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 5678999999999999999999998763 44556778887765544 2 36999999994 44555555
Q ss_pred hhcc---ccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEE
Q psy1758 135 RGAK---VTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 135 ~~~~---~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
.+++ .+|++++|+|++++...+..+.+..+...+.|+++++||+|+.... .......+.... ...+...++|+
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l---~~~~~~~~v~~ 169 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKAL---KKDADDPSVQL 169 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHH---hhccCCCceEE
Confidence 4543 4689999999999888888888888888899999999999997532 222222222211 11233458999
Q ss_pred eeccCCCChh
Q psy1758 211 ISAKTGVGIN 220 (1527)
Q Consensus 211 iSAktg~gI~ 220 (1527)
+||++|+|++
T Consensus 170 ~Sa~~g~gi~ 179 (179)
T TIGR03598 170 FSSLKKTGID 179 (179)
T ss_pred EECCCCCCCC
Confidence 9999999984
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.7e-16 Score=168.68 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=110.4
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||++++....+.....+++.... ...+..++ ..+.+|||||+++|...+..++..+|++++|+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 4799999999999999999998887655555443222 33344444 36789999999999999999999999999999
Q ss_pred eCCCCCcHHHHHH-HHHH----HHcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 148 AADDGVMPQTREA-IAHA----KISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 148 da~~g~~~qt~e~-i~~~----~~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|+++....+.... +..+ ...+.|+++|+||+|+....... ....+. ..++ .+++++||++|.|+.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~------~~~~--~~~~~~Sa~~~~gv~ 152 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA------ESWG--AAFLESSARENENVE 152 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH------HHcC--CeEEEEeCCCCCCHH
Confidence 9998543333222 2222 23467999999999986421110 111111 1222 589999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy1758 221 KLLENISLQAEIL 233 (1527)
Q Consensus 221 eL~~~l~~~~~~~ 233 (1527)
++++++.......
T Consensus 153 ~l~~~l~~~~~~~ 165 (180)
T cd04137 153 EAFELLIEEIEKV 165 (180)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998765443
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.6e-16 Score=162.79 Aligned_cols=144 Identities=26% Similarity=0.348 Sum_probs=112.9
Q ss_pred CEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH--------HHHhhcccc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA--------MRARGAKVT 140 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~--------~~~~~~~~a 140 (1527)
.+|+++|++|+|||||++++.+... .....+++|.+.....+.+.+.++++|||||+.++.. .....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 5799999999999999999998775 3466778888888777888888999999999755432 233566889
Q ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 141 D~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|++++|+|+++.........+.. ..+.|+++|+||+|+...... .......+++++||+++.|++
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~-------------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL-------------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc-------------ccccCCCceEEEECCCCCCHH
Confidence 99999999998666555554443 567999999999999763221 111224689999999999999
Q ss_pred HHHHHHHH
Q psy1758 221 KLLENISL 228 (1527)
Q Consensus 221 eL~~~l~~ 228 (1527)
+++++|..
T Consensus 147 ~l~~~l~~ 154 (157)
T cd04164 147 ELKEALLE 154 (157)
T ss_pred HHHHHHHH
Confidence 99999864
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=8e-16 Score=166.56 Aligned_cols=155 Identities=19% Similarity=0.183 Sum_probs=108.1
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+.++....+...+.++ +.+.....+..++. .+.+|||||++.|..++..+++.+|++|+|+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT-AFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-eeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 47999999999999999999888776655543 34444444555554 6788999999999999999999999999999
Q ss_pred eCCCCCcHHHH--HHHHHHHH--cCCCEEEEEEcccCCcchhH----------HHHHHHhhhcccccccCCCCcEEEeec
Q psy1758 148 AADDGVMPQTR--EAIAHAKI--SGVPLIVAINKIDKLDINLD----------RIKQDLISEQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 148 da~~g~~~qt~--e~i~~~~~--~~vpiIvviNKiDl~~~~~~----------~~~~~l~~~~~~~~~~~~~~~v~~iSA 213 (1527)
|+++....+.. .++..+.. .++|+++++||+|+...... .+..+. ........ +..+++++||
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~--~~~~a~~~-~~~~~~e~Sa 156 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSR--AKALAEKI-GACEYIECSA 156 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHH--HHHHHHHh-CCCeEEEEeC
Confidence 99985433222 12223322 46899999999998642210 000000 00011111 2348999999
Q ss_pred cCCCChhHHHHHHHH
Q psy1758 214 KTGVGINKLLENISL 228 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~ 228 (1527)
++|.|++++|+.++.
T Consensus 157 ~~~~~v~~lf~~~~~ 171 (173)
T cd04130 157 LTQKNLKEVFDTAIL 171 (173)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999999998864
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.2e-17 Score=150.00 Aligned_cols=78 Identities=22% Similarity=0.380 Sum_probs=74.9
Q ss_pred eeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1317 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1317 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|||++++|.+|++|+|+||++|++|||++.+++.. ++++.|++.+|+++++||+++|+++|+|+|+++++|+||+|++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~-~~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESR-GGWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceecc-CCcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 89999999999999999999999999999999986 4689999999999999999999999999999999999999973
|
Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.4e-16 Score=171.86 Aligned_cols=154 Identities=17% Similarity=0.144 Sum_probs=113.7
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++|+|||||+++|....+.....++++.+.....+.+++. .+.+|||||++.|..++..+++.+|++|+|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 478999999999999999999998876666666666665555666654 578999999999999999999999999999
Q ss_pred EeCCCCCcHHHH----HHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQTR----EAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~qt~----e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++....+.. ..+......+.|+++++||+|+...... .....+. ..+ .++++++||++|.|++
T Consensus 86 ~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~e~Sa~~~~~v~ 157 (210)
T PLN03108 86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFA------KEH--GLIFMEASAKTAQNVE 157 (210)
T ss_pred EECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHH------HHc--CCEEEEEeCCCCCCHH
Confidence 999984432222 2222222346899999999998652111 1111111 112 2589999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
++|++++...
T Consensus 158 e~f~~l~~~~ 167 (210)
T PLN03108 158 EAFIKTAAKI 167 (210)
T ss_pred HHHHHHHHHH
Confidence 9999997543
|
|
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-16 Score=167.82 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=112.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc-cccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~ 143 (1527)
++..+|+++|++|+|||||+++|.+..+. ..+.+++..+.....+..++. .+.+|||+|++.|..++..+++.+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35678999999999999999999998887 666666655555445555563 678999999999999999999999999
Q ss_pred EEEEeCCCCCcHHHH-HHHHHHH-HcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 144 VLVVAADDGVMPQTR-EAIAHAK-ISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 144 IlVvda~~g~~~qt~-e~i~~~~-~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
++|+|+++....+.. +++.... ..++|+++|+||+|+.+.... .....+. ..++ ..+++++||++|.|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~------~~~~-~~~~~~~Sa~~~~~v 154 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFC------RKLG-LPPPLHFSSKLGDSS 154 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHH------HHcC-CCCCEEEEeccCccH
Confidence 999999884322221 2233221 237899999999998643211 0011111 1111 124689999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
+++|+.+...
T Consensus 155 ~~lf~~l~~~ 164 (169)
T cd01892 155 NELFTKLATA 164 (169)
T ss_pred HHHHHHHHHH
Confidence 9999999754
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=7e-16 Score=181.48 Aligned_cols=156 Identities=26% Similarity=0.367 Sum_probs=118.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhh--------HHHHHHhhc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA--------FTAMRARGA 137 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~--------f~~~~~~~~ 137 (1527)
.|...|+++|++|+|||||+|+|.+..+ ..+..+.+|++........++.++.||||||... +......++
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 3567899999999999999999998876 5566777888776666666667999999999422 234445677
Q ss_pred cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcc--hhHHHHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 138 KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDI--NLDRIKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 138 ~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~--~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
..+|++++|+|++++........+..+...+.|+++|+||+|+... ........+.. ..+..+++++||++
T Consensus 83 ~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~-------~~~~~~i~~iSA~~ 155 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSE-------LMDFAEIVPISALK 155 (292)
T ss_pred hcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHh-------hCCCCeEEEecCCC
Confidence 8999999999999977666667777777678999999999999732 11111222111 12246899999999
Q ss_pred CCChhHHHHHHHHH
Q psy1758 216 GVGINKLLENISLQ 229 (1527)
Q Consensus 216 g~gI~eL~~~l~~~ 229 (1527)
|.|+++|++.|...
T Consensus 156 ~~gv~~L~~~L~~~ 169 (292)
T PRK00089 156 GDNVDELLDVIAKY 169 (292)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999754
|
|
| >cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-16 Score=148.98 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=74.3
Q ss_pred eeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcE-EEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1317 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKER-VRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1317 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~-~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|||+.++|.+|++|+|+|+.+|++|||++++++..++++ .+|++++|+++++||.++|+++|+|.|+|+++|+||+|++
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 899999999999999999999999999999998764443 8999999999999999999999999999999999999963
|
This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=198.18 Aligned_cols=152 Identities=24% Similarity=0.371 Sum_probs=123.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChh--------hHHHHHHhhcc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE--------AFTAMRARGAK 138 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e--------~f~~~~~~~~~ 138 (1527)
..++|+|+|++|||||||+|+|++... ..+..+|+|++.......+++..+.+|||||.+ .|......++.
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 346899999999999999999998764 567789999999988889999999999999965 35566667889
Q ss_pred ccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 139 VTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 139 ~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
.+|++|+|+|++++..+...+++..++..+.|+|+|+||+|+..... ...... ..+ ....+++||++|.|
T Consensus 354 ~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~--~~~~~~-------~lg-~~~~~~iSA~~g~G 423 (712)
T PRK09518 354 LADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY--DAAEFW-------KLG-LGEPYPISAMHGRG 423 (712)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh--hHHHHH-------HcC-CCCeEEEECCCCCC
Confidence 99999999999999888887788888889999999999999864211 111111 011 12457999999999
Q ss_pred hhHHHHHHHHH
Q psy1758 219 INKLLENISLQ 229 (1527)
Q Consensus 219 I~eL~~~l~~~ 229 (1527)
|++|++.|...
T Consensus 424 I~eLl~~i~~~ 434 (712)
T PRK09518 424 VGDLLDEALDS 434 (712)
T ss_pred chHHHHHHHHh
Confidence 99999999754
|
|
| >cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2 | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.5e-16 Score=148.41 Aligned_cols=94 Identities=57% Similarity=1.017 Sum_probs=90.9
Q ss_pred CceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceeeeEeEeeccCCceeeecCCCcceEecCCCCCCCCCCeEEEe
Q psy1758 243 AKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVI 322 (1527)
Q Consensus 243 ~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~ 322 (1527)
++++|+|+..+++.|++++++|++|+|++||++++|..++|||+|++.+++.+++|.||++|.|.||+++|.+||.|+++
T Consensus 1 a~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~gkVr~l~d~~g~~v~~a~Ps~~V~I~G~~~~P~aGd~~~~~ 80 (95)
T cd03702 1 AEGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTYGKVRAMFDENGKRVKEAGPSTPVEILGLKGVPQAGDKFLVV 80 (95)
T ss_pred CeEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcccccEEEEEECCCCCCCCEECCCCcEEEcCCCCCCCCCCEEEEe
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhh
Q psy1758 323 LNEKKAREIGLFRQ 336 (1527)
Q Consensus 323 ~~e~~a~~~~~~~~ 336 (1527)
.+|++|++++.+|+
T Consensus 81 ~se~~Ak~~~~~r~ 94 (95)
T cd03702 81 ESEKEAKEIAEYRK 94 (95)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999998774
|
IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2. |
| >cd01514 Elongation_Factor_C Elongation factor G C-terminus | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-16 Score=148.17 Aligned_cols=79 Identities=25% Similarity=0.467 Sum_probs=75.8
Q ss_pred eeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1317 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1317 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|||++++|.+|++|+|+|+++|++|||++.+++..++++.+|++.+|+++++||+++|++.|+|+|+|++.|+||++++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecCCCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 8999999999999999999999999999999998754789999999999999999999999999999999999999963
|
This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=160.53 Aligned_cols=149 Identities=28% Similarity=0.340 Sum_probs=111.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
++|+++|++|+|||||++++....+...+.+++|.+.....+..++ ..+.+|||||++.|..++....+.++.++.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 6899999999999999999999888777888999998887777887 67889999999999888877777777777777
Q ss_pred eCCCCC-------cHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 148 AADDGV-------MPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 148 da~~g~-------~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|....+ ..+.......+ ..+.|+++++||+|+.............. .. ...+++++||++|.|+.
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~-~~~~~~~~sa~~~~gv~ 153 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHA-ESNVPIILVGNKIDLRDAKLKTHVAFLFA------KL-NGEPIIPLSAETGKNID 153 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhc-ccCCcEEEEEEcccCCcchhhHHHHHHHh------hc-cCCceEEeecCCCCCHH
Confidence 766532 12222222322 23889999999999976432211111111 11 23479999999999999
Q ss_pred HHHHHH
Q psy1758 221 KLLENI 226 (1527)
Q Consensus 221 eL~~~l 226 (1527)
++++.|
T Consensus 154 ~~~~~l 159 (161)
T TIGR00231 154 SAFKIV 159 (161)
T ss_pred HHHHHh
Confidence 999987
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.7e-16 Score=189.72 Aligned_cols=150 Identities=28% Similarity=0.255 Sum_probs=116.7
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
...+|+++|++|+|||||+|+|+.... .......|+|.+.....+.++++.++||||||+.++..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~---------------a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~ 278 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEER---------------AIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDD 278 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCC---------------cccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCcc
Confidence 346899999999999999999986421 12234578888888888899999999999999988765
Q ss_pred HHH--------HHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 1001 EVE--------RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 1001 ev~--------~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
.++ ..+..+|++++|+|++++...+....|.. ..+.|+++|+||+|+.......
T Consensus 279 ~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~---------------- 340 (449)
T PRK05291 279 EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE---------------- 340 (449)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh----------------
Confidence 433 35788999999999998776665555554 4578999999999996532111
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
.....|++++||++|. |++.|++.+.+.++.
T Consensus 341 ~~~~~~~i~iSAktg~----------GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 341 EENGKPVIRISAKTGE----------GIDELREAIKELAFG 371 (449)
T ss_pred hccCCceEEEEeeCCC----------CHHHHHHHHHHHHhh
Confidence 1123478999999998 999999999988753
|
|
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=160.65 Aligned_cols=151 Identities=23% Similarity=0.326 Sum_probs=116.9
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
+|+++|++++|||||+++|.+..+...+.+++..+.....+..++. .+.+|||+|++.|..++...++.+|++|+|+|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6999999999999999999999887777777667777777777766 58899999999999999999999999999999
Q ss_pred CCCCC----cHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 149 ADDGV----MPQTREAIAHAKISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 149 a~~g~----~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
.++.. ...|.+.+......+.|++|++||.|+.+...-. ....+. ..++ .+++++||+++.||.++
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~------~~~~--~~~~e~Sa~~~~~v~~~ 152 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFA------KELG--VPYFEVSAKNGENVKEI 152 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHH------HHTT--SEEEEEBTTTTTTHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHH------HHhC--CEEEEEECCCCCCHHHH
Confidence 99832 2244444444444468999999999987521111 111111 1222 68999999999999999
Q ss_pred HHHHHHH
Q psy1758 223 LENISLQ 229 (1527)
Q Consensus 223 ~~~l~~~ 229 (1527)
|..++..
T Consensus 153 f~~~i~~ 159 (162)
T PF00071_consen 153 FQELIRK 159 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999754
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=163.38 Aligned_cols=157 Identities=29% Similarity=0.340 Sum_probs=116.4
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch--
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG-- 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~-- 999 (1527)
.++|+++|++|+|||||+++|+..... ..+..+++|.......+.+++..+++|||||+.++.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 66 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERV---------------IVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKV 66 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccce---------------eccCCCCCccCceeeEEEECCeeEEEEECCCCccccch
Confidence 358999999999999999999865221 112235667766667777888899999999986542
Q ss_pred ---------HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC---hhhhHHHHHHHHhh
Q psy1758 1000 ---------GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR---PEWVVDATFDLFDK 1067 (1527)
Q Consensus 1000 ---------~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~---~~~v~~~~~~~~~~ 1067 (1527)
......+..+|++++|+|+..+...+...++..+...+.|+++++||+|+...+ .+...+.+.+.+..
T Consensus 67 ~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 146 (174)
T cd01895 67 EEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPF 146 (174)
T ss_pred hccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhccc
Confidence 123345688999999999999888888788888888899999999999997653 22223333322211
Q ss_pred hcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1068 LCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1068 l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
....|++++||++|. |+.++++++.+
T Consensus 147 ------~~~~~~~~~Sa~~~~----------~i~~~~~~l~~ 172 (174)
T cd01895 147 ------LDYAPIVFISALTGQ----------GVDKLFDAIDE 172 (174)
T ss_pred ------ccCCceEEEeccCCC----------CHHHHHHHHHH
Confidence 113589999999998 99999988865
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=186.06 Aligned_cols=152 Identities=25% Similarity=0.296 Sum_probs=118.5
Q ss_pred ccccCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH--------HHH
Q psy1758 64 ESLVRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA--------MRA 134 (1527)
Q Consensus 64 ~~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~--------~~~ 134 (1527)
+....+++|+++|++|+|||||+|+|.+... .++..+|+|++.....+.+++.++.+|||||+..+.. ...
T Consensus 198 ~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 198 EKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred HHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 4556778999999999999999999998764 5677899999999999999999999999999754432 234
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
.+++.+|++++|+|++++...+.. ++..+...++|+++|+||+|+...+. ..+. ..+ ..+++++||+
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~~~----~~~~------~~~--~~~~~~vSak 344 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKINSL----EFFV------SSK--VLNSSNLSAK 344 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCcch----hhhh------hhc--CCceEEEEEe
Confidence 577899999999999987655544 45555556899999999999965311 1111 111 2478999999
Q ss_pred CCCChhHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~ 229 (1527)
+ .||+++++.+...
T Consensus 345 ~-~gI~~~~~~L~~~ 358 (442)
T TIGR00450 345 Q-LKIKALVDLLTQK 358 (442)
T ss_pred c-CCHHHHHHHHHHH
Confidence 8 6999999988754
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.4e-16 Score=164.87 Aligned_cols=150 Identities=21% Similarity=0.277 Sum_probs=101.8
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhh-HHHHHHhhccccCEEEEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEA-FTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~-f~~~~~~~~~~aD~~IlVv 147 (1527)
+|+++|++|+|||||++++....+...+.+++. ......+..++. .+.||||||++. +......+++.+|++|+|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLE-SLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChH-HhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 489999999999999999987766544444332 222233344444 678999999985 4556677889999999999
Q ss_pred eCCCCCcHH----HHHHHHHHH--HcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCC-CC
Q psy1758 148 AADDGVMPQ----TREAIAHAK--ISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTG-VG 218 (1527)
Q Consensus 148 da~~g~~~q----t~e~i~~~~--~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg-~g 218 (1527)
|+++....+ |...+.... ..++|+++|+||+|+....... ....+ ...++ .+++++||++| .|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~------~~~~~--~~~~e~Sa~~~~~~ 151 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKL------ASELG--CLFFEVSAAEDYDG 151 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHH------HHHcC--CEEEEeCCCCCchh
Confidence 999854322 233333322 3479999999999985421100 01111 11122 58999999999 59
Q ss_pred hhHHHHHHHHH
Q psy1758 219 INKLLENISLQ 229 (1527)
Q Consensus 219 I~eL~~~l~~~ 229 (1527)
|+++|+.++..
T Consensus 152 v~~~f~~l~~~ 162 (165)
T cd04146 152 VHSVFHELCRE 162 (165)
T ss_pred HHHHHHHHHHH
Confidence 99999999743
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-15 Score=174.50 Aligned_cols=116 Identities=24% Similarity=0.367 Sum_probs=97.8
Q ss_pred EEEEEecCCCChhHHHHHHHccccccc------------------cCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHH
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFS------------------EAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAM 132 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~------------------~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~ 132 (1527)
+|+++||+|+|||||+++|........ ...++|.......+.+++..+++|||||+.+|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 489999999999999999864321110 11355666667778889999999999999999999
Q ss_pred HHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhH
Q psy1758 133 RARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD 186 (1527)
Q Consensus 133 ~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~ 186 (1527)
+..+++.+|++++|+|++++...++...|..+...++|.++++||+|+...+..
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~ 134 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFD 134 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHH
Confidence 999999999999999999999999999999988899999999999998865433
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-15 Score=162.89 Aligned_cols=154 Identities=20% Similarity=0.236 Sum_probs=106.0
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|.+..+.....+.+... ....+...+ ..+.+|||||++.|...+...++.+|++++|+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDN-YSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 479999999999999999999988755555444322 233334443 37899999999999888888889999999999
Q ss_pred eCCCCCcHHH--HHHHHHHH--HcCCCEEEEEEcccCCcchhHHH---------HHHHhhhcccccccCCCCcEEEeecc
Q psy1758 148 AADDGVMPQT--REAIAHAK--ISGVPLIVAINKIDKLDINLDRI---------KQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 148 da~~g~~~qt--~e~i~~~~--~~~vpiIvviNKiDl~~~~~~~~---------~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
|+++....+. .+++..+. ..+.|+++|+||+|+........ ..... ......+ +..+++++||+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~-~~~~~~~~Sa~ 156 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEG--EKLAKEI-GAIGYMECSAL 156 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHH--HHHHHHh-CCeEEEEeecC
Confidence 9997332221 11222222 23699999999999976432210 00000 0011111 22389999999
Q ss_pred CCCChhHHHHHHH
Q psy1758 215 TGVGINKLLENIS 227 (1527)
Q Consensus 215 tg~gI~eL~~~l~ 227 (1527)
+|.|++++++.|.
T Consensus 157 ~~~gi~~l~~~i~ 169 (171)
T cd00157 157 TQEGVKEVFEEAI 169 (171)
T ss_pred CCCCHHHHHHHHh
Confidence 9999999999885
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >KOG0463|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.4e-16 Score=171.65 Aligned_cols=232 Identities=24% Similarity=0.328 Sum_probs=166.0
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccc--------------cCCceeEEEEEEEE-------------------Ee--
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFS--------------EAGGITQHIGAYNV-------------------VT-- 113 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~--------------~~~giT~~~~~~~~-------------------~~-- 113 (1527)
..+|+++|.+++|||||+..|+......+ -..|.|..++.-.+ +|
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 35799999999999999977754322111 11222222221111 11
Q ss_pred ----CCeEEEEEeCCChhhHHHHHHhhc--cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHH
Q psy1758 114 ----NHGSITFLDTPGHEAFTAMRARGA--KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR 187 (1527)
Q Consensus 114 ----~~~~i~~iDTPG~e~f~~~~~~~~--~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~ 187 (1527)
..+-++|||.+|||+|.+....+. ...|...|++-+..|+.-.|.|++..+....+|+++|++|+|.+.++.-+
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANiLq 292 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANILQ 292 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHHHHH
Confidence 113589999999999999888776 56799999999999999999999999999999999999999999876533
Q ss_pred HHHHHhhhcccc--------------------ccc--CCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCce
Q psy1758 188 IKQDLISEQVIP--------------------EEY--GGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKG 245 (1527)
Q Consensus 188 ~~~~l~~~~~~~--------------------~~~--~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~ 245 (1527)
..-.+....... .++ ...+|+|.+|..+|+|++-|...|.... ...+...+.|+..
T Consensus 293 EtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLNlls--~R~~~~E~~PAeF 370 (641)
T KOG0463|consen 293 ETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLNLLS--LRRQLNENDPAEF 370 (641)
T ss_pred HHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHhhcC--cccccccCCCcce
Confidence 322221111100 011 1358999999999999998887775432 1223345678999
Q ss_pred EEEEEeecCCCceEEEEEeeccEEEeccEEEeccee------eeEeEeeccCCceeeecCCCcc
Q psy1758 246 VIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASY------GRIRSMLNENGKNILEAGPSIP 303 (1527)
Q Consensus 246 ~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~------~kVr~i~~~~g~~v~~a~~~~~ 303 (1527)
++.+.++.++.|+|+.+...+|+++.+|.+..|+.. ..|++|+...- ++..+.-|+.
T Consensus 371 QIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRM-pV~~VrcGQt 433 (641)
T KOG0463|consen 371 QIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRM-PVGIVRCGQT 433 (641)
T ss_pred eecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhccc-cceEEeccch
Confidence 999999999999999999999999999999998763 47778865443 3444444443
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.7e-15 Score=157.47 Aligned_cols=157 Identities=24% Similarity=0.300 Sum_probs=124.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccc--cccccCCceeEEEEEEEEEeCCeEEEEEeCCC----------hhhHHHHHHh
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTN--VVFSEAGGITQHIGAYNVVTNHGSITFLDTPG----------HEAFTAMRAR 135 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~--~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG----------~e~f~~~~~~ 135 (1527)
..+.|+++|.+|||||||+|+|++.. ...+..||.||.+..+.+... +.|+|.|| .+.+..+...
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 56789999999999999999999977 688999999999998877533 88999999 5667777777
Q ss_pred hcc---ccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEe
Q psy1758 136 GAK---VTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 136 ~~~---~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
|+. .-.++++++|+..+....+.+.+..+...++|++++.||+|+...+.. +....+.+.......+. ..++..
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~--~~~~~~ 177 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDD--QWVVLF 177 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCcc--ceEEEE
Confidence 763 357899999999999999999999999999999999999999874322 22223322222222221 118889
Q ss_pred eccCCCChhHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~ 229 (1527)
|+.++.|+++|.+.|...
T Consensus 178 ss~~k~Gi~~l~~~i~~~ 195 (200)
T COG0218 178 SSLKKKGIDELKAKILEW 195 (200)
T ss_pred ecccccCHHHHHHHHHHH
Confidence 999999999999998754
|
|
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=159.15 Aligned_cols=134 Identities=25% Similarity=0.360 Sum_probs=91.2
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCCh-----hhHHHHHHhhccccCEEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGH-----EAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~-----e~f~~~~~~~~~~aD~~Il 145 (1527)
+|+++|++|+|||||+++|.+..+. +.++++ +.+.. .+|||||+ +.|..+. ..++.+|++++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-------~~~~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vil 68 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-------VEYND---GAIDTPGEYVENRRLYSALI-VTAADADVIAL 68 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee-------EEEcC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEEE
Confidence 6999999999999999999887652 222221 22222 68999997 3344443 45899999999
Q ss_pred EEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 146 VVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 146 Vvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
|+|++++...+...++.. .+.|+++|+||+|+.+.... +....... .. +..+++++||++|.|++++|+
T Consensus 69 v~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~------~~-~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 69 VQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADVDIERAKELLE------TA-GAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCcccCHHHHHHHHH------Hc-CCCcEEEEecCCCCCHHHHHH
Confidence 999998765544333222 24599999999998652211 11111111 11 123799999999999999999
Q ss_pred HHH
Q psy1758 225 NIS 227 (1527)
Q Consensus 225 ~l~ 227 (1527)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-15 Score=159.89 Aligned_cols=149 Identities=23% Similarity=0.275 Sum_probs=106.6
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
+|+++|++|+|||||++++.+..+.....+.+. +.....+..++ ..+.+|||||++.+..++...++.+|++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 589999999999999999998776555444333 44444555554 478899999999999999999999999999999
Q ss_pred CCCCCcH-HHHHHHHHHH----HcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 149 ADDGVMP-QTREAIAHAK----ISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 149 a~~g~~~-qt~e~i~~~~----~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+++.... +....+..+. ..++|+++|+||+|+....... ....+. ..++ .+++++||++|.|+++
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~--~~~~~~S~~~~~~i~~ 151 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALA------KEWG--CPFIETSAKDNINIDE 151 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHH------HHcC--CcEEEeccCCCCCHHH
Confidence 9874321 1222222222 1478999999999987622111 111111 1111 5899999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+++.|..
T Consensus 152 l~~~l~~ 158 (160)
T cd00876 152 VFKLLVR 158 (160)
T ss_pred HHHHHHh
Confidence 9999864
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.9e-15 Score=175.58 Aligned_cols=155 Identities=21% Similarity=0.234 Sum_probs=112.8
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEe-CCeEEEEEeCCChh-------hHHHHHHhhccccC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT-NHGSITFLDTPGHE-------AFTAMRARGAKVTD 141 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~-~~~~i~~iDTPG~e-------~f~~~~~~~~~~aD 141 (1527)
+.|+|+|.||+|||||+++|+.....++..+++|.+.....+.+ ++.++++|||||.- .+.....+.+..+|
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 56999999999999999999998877888899999999888888 45689999999952 23444556677899
Q ss_pred EEEEEEeCCCCCcHHHHHHH-HHHHH-----cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 142 IVVLVVAADDGVMPQTREAI-AHAKI-----SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 142 ~~IlVvda~~g~~~qt~e~i-~~~~~-----~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
++++|+|+++....+..+.| ..+.. .+.|+++|+||+|+.+..... ....... .... ..+++++||++
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~--~~~~~~~--~~~~--~~~i~~iSAkt 312 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEER--EKRAALE--LAAL--GGPVFLISAVT 312 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHH--HHHHHHH--HHhc--CCCEEEEEcCC
Confidence 99999999974322222222 22322 368999999999997533211 1111110 0111 25899999999
Q ss_pred CCChhHHHHHHHHHH
Q psy1758 216 GVGINKLLENISLQA 230 (1527)
Q Consensus 216 g~gI~eL~~~l~~~~ 230 (1527)
++|+++|+++|....
T Consensus 313 g~GI~eL~~~L~~~l 327 (335)
T PRK12299 313 GEGLDELLRALWELL 327 (335)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999997553
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=169.19 Aligned_cols=111 Identities=38% Similarity=0.580 Sum_probs=90.7
Q ss_pred EEEEEecCCCChhHHHHHHHccccccc-------------------cCCceeEEEEEEEEEeC-----CeEEEEEeCCCh
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFS-------------------EAGGITQHIGAYNVVTN-----HGSITFLDTPGH 126 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~-------------------~~~giT~~~~~~~~~~~-----~~~i~~iDTPG~ 126 (1527)
+|+++||+|||||||+++|........ ...|+|.......+.+. ...++|||||||
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 599999999999999999976543211 22356666555555443 357999999999
Q ss_pred hhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCC
Q psy1758 127 EAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL 181 (1527)
Q Consensus 127 e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~ 181 (1527)
++|...+..++..+|++++|+|+.++...++.+++..+...+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 9999999999999999999999999888888777777777789999999999985
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=161.18 Aligned_cols=148 Identities=16% Similarity=0.186 Sum_probs=98.9
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
+|+++|+.|+|||||+.++....+.....+ +..+. ...+..++. .+.+|||+|++.+ .+++.+|++++|+|
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~-~~~~~-~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d 74 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLESP-EGGRF-KKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFS 74 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCCC-Cccce-EEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEE
Confidence 699999999999999999988776544332 22222 244566664 5889999999753 35678999999999
Q ss_pred CCCCCcHHHH-HHHHHHHH----cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHH
Q psy1758 149 ADDGVMPQTR-EAIAHAKI----SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223 (1527)
Q Consensus 149 a~~g~~~qt~-e~i~~~~~----~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~ 223 (1527)
.++....+.. .++..+.. .++|+++|+||+|+.......+....... ...+ ...++|++|||++|.||+++|
T Consensus 75 ~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~--~~~~-~~~~~~~e~SAk~~~~i~~~f 151 (158)
T cd04103 75 LENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQ--LCAD-MKRCSYYETCATYGLNVERVF 151 (158)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHH--HHHH-hCCCcEEEEecCCCCCHHHHH
Confidence 9995543332 22222221 45799999999998532211111111101 1111 123689999999999999999
Q ss_pred HHHHH
Q psy1758 224 ENISL 228 (1527)
Q Consensus 224 ~~l~~ 228 (1527)
+.++.
T Consensus 152 ~~~~~ 156 (158)
T cd04103 152 QEAAQ 156 (158)
T ss_pred HHHHh
Confidence 98863
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.9e-15 Score=161.48 Aligned_cols=155 Identities=21% Similarity=0.299 Sum_probs=112.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc--ccccCCceeEEEEEEEEEeCCeEEEEEeCCCh----------hhHHHHHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV--VFSEAGGITQHIGAYNVVTNHGSITFLDTPGH----------EAFTAMRA 134 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~--~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~----------e~f~~~~~ 134 (1527)
...++|+++|++|+|||||+++|++..+ ..+..+|.|+++....+ +.++.||||||+ +.|..+..
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 4668899999999999999999998753 44555677777665443 367999999993 55655555
Q ss_pred hhccc---cCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEE
Q psy1758 135 RGAKV---TDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 135 ~~~~~---aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
.+++. ++++++|+|++++......+....+...++|+++++||+|+.+.... .....+... . ... ..++++
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~-l--~~~--~~~~~~ 173 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKA-L--KFG--DDEVIL 173 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHH-H--Hhc--CCceEE
Confidence 55544 47888999998877666656666667788999999999999753221 111111111 1 111 358999
Q ss_pred eeccCCCChhHHHHHHHHH
Q psy1758 211 ISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 211 iSAktg~gI~eL~~~l~~~ 229 (1527)
+||++|.|++++++.|...
T Consensus 174 ~Sa~~~~gi~~l~~~i~~~ 192 (196)
T PRK00454 174 FSSLKKQGIDELRAAIAKW 192 (196)
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 9999999999999998644
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-15 Score=160.96 Aligned_cols=153 Identities=20% Similarity=0.248 Sum_probs=104.9
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCe-EEEEEeCCCCCC-----
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT-RINIIDTPGHAD----- 997 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~-~iniiDTPGh~d----- 997 (1527)
||+++|++|+|||||+++|...... .....+.|+......+.+++. .++||||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~----------------v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK----------------IADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc----------------ccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc
Confidence 7999999999999999999754211 112234566666666777776 999999999743
Q ss_pred --chHHHHHHHHhcCEEEEEEeCCCC-CChhH-HHHHHHHHH-----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhh
Q psy1758 998 --FGGEVERILSMVDNVLLLIDAVEG-PMPQT-RFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 1068 (1527)
Q Consensus 998 --f~~ev~~~l~~aD~ailVVDa~~G-~~~qt-~~~~~~~~~-----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l 1068 (1527)
+.....+.+..+|++++|+|++++ -..+. ..+.+.+.. .+.|+++|+||+|+.+.. ...+.+.......
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~~ 143 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEE--ELFELLKELLKEL 143 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCch--hhHHHHHHHHhhC
Confidence 344555667789999999999986 22222 233333333 368999999999986533 2222222222111
Q ss_pred cccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1069 ~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
...|++++||++|. |++.+++++.+.
T Consensus 144 ------~~~~~~~~Sa~~~~----------gi~~l~~~i~~~ 169 (170)
T cd01898 144 ------WGKPVFPISALTGE----------GLDELLRKLAEL 169 (170)
T ss_pred ------CCCCEEEEecCCCC----------CHHHHHHHHHhh
Confidence 23579999999998 999999998764
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.9e-15 Score=166.29 Aligned_cols=152 Identities=18% Similarity=0.163 Sum_probs=101.4
Q ss_pred CEEEEEecCCCChhHHHHHHHccccc-cccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhcc-ccCEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAK-VTDIVVL 145 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~-~aD~~Il 145 (1527)
.+|+++|++|+|||||+++|..+.+. ....+....+.....+..++ ..+.||||||++.+ .....++ .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence 37999999999999999999877764 33333332233334444433 57899999999833 3344555 8999999
Q ss_pred EEeCCCCCcHHH-HHHHHHHHH----cCCCEEEEEEcccCCcchhHHH--HHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 146 VVAADDGVMPQT-REAIAHAKI----SGVPLIVAINKIDKLDINLDRI--KQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 146 Vvda~~g~~~qt-~e~i~~~~~----~~vpiIvviNKiDl~~~~~~~~--~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
|||+++....+. .+++..+.. .++|+|+|+||+|+........ ...+. ..+ .++++++||++|.|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a------~~~--~~~~~e~SA~~~~g 150 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACA------VVF--DCKFIETSAGLQHN 150 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHH------HHc--CCeEEEecCCCCCC
Confidence 999998432221 122222222 4689999999999865321110 11111 111 25799999999999
Q ss_pred hhHHHHHHHHHHH
Q psy1758 219 INKLLENISLQAE 231 (1527)
Q Consensus 219 I~eL~~~l~~~~~ 231 (1527)
|+++|+.+..+..
T Consensus 151 v~~l~~~l~~~~~ 163 (221)
T cd04148 151 VDELLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999986543
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-15 Score=159.87 Aligned_cols=139 Identities=19% Similarity=0.259 Sum_probs=94.2
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCCh----hhHHHHHHhhccccCEEEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGH----EAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~----e~f~~~~~~~~~~aD~~IlV 146 (1527)
+|+++|++|+|||||+++|.+..... ..|+.+ .+... .+|||||+ ..+...+..+++.+|++++|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~----~~~~~v-----~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v 71 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA----RKTQAV-----EFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYV 71 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC----ccceEE-----EECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEE
Confidence 69999999999999999988643211 112221 22222 27999996 34444445568899999999
Q ss_pred EeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHH
Q psy1758 147 VAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226 (1527)
Q Consensus 147 vda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l 226 (1527)
+|++++........+.. ..+.|+++++||+|+.+.+.+.....+. ..+...|++++||++|+|+++|++.+
T Consensus 72 ~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~~~~~~~~~~-------~~~~~~p~~~~Sa~~g~gi~~l~~~l 142 (158)
T PRK15467 72 HGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDADVAATRKLLL-------ETGFEEPIFELNSHDPQSVQQLVDYL 142 (158)
T ss_pred EeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcccHHHHHHHHH-------HcCCCCCEEEEECCCccCHHHHHHHH
Confidence 99998654333222221 2467999999999997644433222221 12222599999999999999999999
Q ss_pred HHH
Q psy1758 227 SLQ 229 (1527)
Q Consensus 227 ~~~ 229 (1527)
...
T Consensus 143 ~~~ 145 (158)
T PRK15467 143 ASL 145 (158)
T ss_pred HHh
Confidence 754
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.62 E-value=4e-15 Score=159.87 Aligned_cols=153 Identities=21% Similarity=0.139 Sum_probs=104.4
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH--
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG-- 1000 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~-- 1000 (1527)
|+|+++|++|+|||||+++|+..... .+...+.|.......+.+++.+++||||||+.+...
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 64 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE----------------VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE 64 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc----------------cCCCCCcccceeEEEEccCceEEEEEECCCcCCccccC
Confidence 58999999999999999999865211 112245566666667777889999999999854211
Q ss_pred ------HHHHHH-HhcCEEEEEEeCCCCCC---hhHHHHHHHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHHhhh
Q psy1758 1001 ------EVERIL-SMVDNVLLLIDAVEGPM---PQTRFVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 1068 (1527)
Q Consensus 1001 ------ev~~~l-~~aD~ailVVDa~~G~~---~qt~~~~~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l 1068 (1527)
....++ ..+|++|+|+|+++... .....++..+... ++|+++|+||+|+.+.+. . .+... +..
T Consensus 65 ~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~--~-~~~~~-~~~- 139 (168)
T cd01897 65 RNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFED--L-SEIEE-EEE- 139 (168)
T ss_pred CchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhh--H-HHHHH-hhh-
Confidence 111122 34799999999986432 2223444555444 799999999999965432 1 11111 111
Q ss_pred cccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1069 ~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...+|++++||++|. |++++++++.+.+
T Consensus 140 -----~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 167 (168)
T cd01897 140 -----LEGEEVLKISTLTEE----------GVDEVKNKACELL 167 (168)
T ss_pred -----hccCceEEEEecccC----------CHHHHHHHHHHHh
Confidence 124679999999998 9999999998754
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >KOG0088|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.9e-16 Score=154.78 Aligned_cols=155 Identities=20% Similarity=0.185 Sum_probs=111.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
-.++|+++|..-+|||||+-++....|......++...+....++..+. .+.+|||+|||+|..+-+.|++.+|+++|
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 4578999999999999999999888876554443333333344444444 68899999999999999999999999999
Q ss_pred EEeCCCCCcHHH----HHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 146 VVAADDGVMPQT----REAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 146 Vvda~~g~~~qt----~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+|.+|....|- ...++.+....+.+++|+||+|+.........+... ..+.. ...++++||+.+.||.+
T Consensus 92 VyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~----YAesv--GA~y~eTSAk~N~Gi~e 165 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEA----YAESV--GALYMETSAKDNVGISE 165 (218)
T ss_pred EEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHH----HHHhh--chhheecccccccCHHH
Confidence 999999654443 333344444456799999999996532211111111 11111 24689999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
||+.|..
T Consensus 166 lFe~Lt~ 172 (218)
T KOG0088|consen 166 LFESLTA 172 (218)
T ss_pred HHHHHHH
Confidence 9999874
|
|
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-15 Score=166.81 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=97.8
Q ss_pred CEEEEEecCCCChhHHHH-HHHcccc-----ccccCCceeE-EEEE-E-------EEEeCC--eEEEEEeCCChhhHHHH
Q psy1758 70 PIVTIMGHVDHGKTSLLD-YIRKTNV-----VFSEAGGITQ-HIGA-Y-------NVVTNH--GSITFLDTPGHEAFTAM 132 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~-~L~~~~~-----~~~~~~giT~-~~~~-~-------~~~~~~--~~i~~iDTPG~e~f~~~ 132 (1527)
.+|+++|+.++|||||+. ++.+..+ ...+.|++.. +... . ....++ ..+.||||||++.+ +
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--~ 80 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--D 80 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--h
Confidence 589999999999999995 5655433 3334454421 1111 1 112333 37889999999863 5
Q ss_pred HHhhccccCEEEEEEeCCCCCcHHHHH--HHHHHHH--cCCCEEEEEEcccCCcchh-----------------HHHHHH
Q psy1758 133 RARGAKVTDIVVLVVAADDGVMPQTRE--AIAHAKI--SGVPLIVAINKIDKLDINL-----------------DRIKQD 191 (1527)
Q Consensus 133 ~~~~~~~aD~~IlVvda~~g~~~qt~e--~i~~~~~--~~vpiIvviNKiDl~~~~~-----------------~~~~~~ 191 (1527)
+..+++.+|++++|+|+++....+... ++..+.. .++|+++|+||+|+.+... ..+..+
T Consensus 81 ~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 160 (195)
T cd01873 81 RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPE 160 (195)
T ss_pred hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHH
Confidence 666889999999999999854333221 2222222 4789999999999864211 000000
Q ss_pred HhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHH
Q psy1758 192 LISEQVIPEEYGGASPFISISAKTGVGINKLLENISL 228 (1527)
Q Consensus 192 l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~ 228 (1527)
. .......+ .++|++|||++|.||+++|+.++.
T Consensus 161 e--~~~~a~~~--~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 161 T--GRAVAKEL--GIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred H--HHHHHHHh--CCEEEEcCCCCCCCHHHHHHHHHH
Confidence 0 01111222 258999999999999999999874
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >KOG1143|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-15 Score=167.50 Aligned_cols=253 Identities=21% Similarity=0.247 Sum_probs=177.2
Q ss_pred CCEEEEEecCCCChhHHHHHHHcccccccc--------------CCceeEEEEEEEE---------Ee------------
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSE--------------AGGITQHIGAYNV---------VT------------ 113 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~--------------~~giT~~~~~~~~---------~~------------ 113 (1527)
..+|+++|..++|||||+..|+.+....+. ..|.|..+....+ ++
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 357999999999999999888765443221 1233333332221 11
Q ss_pred CCeEEEEEeCCChhhHHHHHHhhcc--ccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch-hHHHHH
Q psy1758 114 NHGSITFLDTPGHEAFTAMRARGAK--VTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN-LDRIKQ 190 (1527)
Q Consensus 114 ~~~~i~~iDTPG~e~f~~~~~~~~~--~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~-~~~~~~ 190 (1527)
..+.++|+|.+||.+|......++. ..|.++||++|+.|+...|+|++..+...++|++++++|+|+.+.. .++..+
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~~~~tv~ 326 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQGLKKTVK 326 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccchhHHHHHH
Confidence 1235899999999999998888774 5699999999999999999999999999999999999999998642 222222
Q ss_pred HHhh----hccc-----------------ccccCCCCcEEEeeccCCCChhHHHHHHHHHHHH---HhhcCCCCCCCceE
Q psy1758 191 DLIS----EQVI-----------------PEEYGGASPFISISAKTGVGINKLLENISLQAEI---LELKAPVTTPAKGV 246 (1527)
Q Consensus 191 ~l~~----~~~~-----------------~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~---~~~~~~~~~p~~~~ 246 (1527)
++.. .+.. ....+..+|+|.+|+.+|+|++-|...|.-+... .+...-...|....
T Consensus 327 ~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn~Lsp~~~~~e~~~L~q~~~eFq 406 (591)
T KOG1143|consen 327 DLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLNCLSPAGTAEERIQLVQLPAEFQ 406 (591)
T ss_pred HHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHhhcCCcCChHHHHHHhcCcceee
Confidence 2211 0000 0112356899999999999999877766422100 00001123577889
Q ss_pred EEEEeecCCCceEEEEEeeccEEEeccEEEeccee------eeEeEeeccCCceeeecCCCcceEec-CCCCCC--CCCC
Q psy1758 247 IIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASY------GRIRSMLNENGKNILEAGPSIPVEIQ-GLTKVP--FSGE 317 (1527)
Q Consensus 247 v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~------~kVr~i~~~~g~~v~~a~~~~~v~I~-gl~~~~--~~G~ 317 (1527)
|.+.+..+..|+|+.+.+.+|.++.|+.+++|+.. -+|.+|+.+ ...+..+.||++..++ +..+.+ .+|.
T Consensus 407 vdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rn-r~acrvvraGqaAslsl~d~D~~~LR~GM 485 (591)
T KOG1143|consen 407 VDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRN-RQACRVVRAGQAASLSLNDPDGVSLRRGM 485 (591)
T ss_pred HhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeeecc-ccceeeecCccceeeeccCCCccchhcce
Confidence 99999999999999999999999999999999863 377778554 3456667777777665 222222 4677
Q ss_pred eEEEe
Q psy1758 318 ELFVI 322 (1527)
Q Consensus 318 ~~~~~ 322 (1527)
++...
T Consensus 486 Vl~~~ 490 (591)
T KOG1143|consen 486 VLAEI 490 (591)
T ss_pred EEeec
Confidence 66643
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-14 Score=153.77 Aligned_cols=156 Identities=26% Similarity=0.326 Sum_probs=111.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccc-cccCCceeEEEEEEEEEeCCeEEEEEeCCChhh--------HHHHHHhhcc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA--------FTAMRARGAK 138 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~--------f~~~~~~~~~ 138 (1527)
+..+|+++|++|+|||||++++.+.... ....+.++.......+...+..+.+|||||... +.......+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999987753 333445555555555555667899999999543 3334556688
Q ss_pred ccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 139 VTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 139 ~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
.+|++++|+|+++.........+..+...+.|+++++||+|+.... ......+... .......+++++|++++.|
T Consensus 82 ~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~----~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 82 DVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDK-EDLLPLLEKL----KELGPFAEIFPISALKGEN 156 (168)
T ss_pred hCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccH-HHHHHHHHHH----HhccCCCceEEEEeccCCC
Confidence 9999999999998755555555566666789999999999997321 1111111111 1112245899999999999
Q ss_pred hhHHHHHHHH
Q psy1758 219 INKLLENISL 228 (1527)
Q Consensus 219 I~eL~~~l~~ 228 (1527)
++++++.|..
T Consensus 157 ~~~l~~~l~~ 166 (168)
T cd04163 157 VDELLEEIVK 166 (168)
T ss_pred hHHHHHHHHh
Confidence 9999999853
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-15 Score=160.89 Aligned_cols=148 Identities=21% Similarity=0.206 Sum_probs=104.2
Q ss_pred EEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC-CeEEEEEeCCChhhH-------HHHHHhhccccCEEEE
Q psy1758 74 IMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN-HGSITFLDTPGHEAF-------TAMRARGAKVTDIVVL 145 (1527)
Q Consensus 74 IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~-~~~i~~iDTPG~e~f-------~~~~~~~~~~aD~~Il 145 (1527)
++|++|+|||||+++|.+.....+..+++|.+.....+.++ +.++.||||||+... .......++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 58999999999999999987656667788888777777777 889999999997321 1123345778999999
Q ss_pred EEeCCCCC------cHH----HHHHHHHHH-------HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcE
Q psy1758 146 VVAADDGV------MPQ----TREAIAHAK-------ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPF 208 (1527)
Q Consensus 146 Vvda~~g~------~~q----t~e~i~~~~-------~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v 208 (1527)
|+|+++.. ... +...+.... ..+.|+++|+||+|+.......... ... .......++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~--~~~----~~~~~~~~~ 154 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL--VRE----LALEEGAEV 154 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH--HHH----HhcCCCCCE
Confidence 99999862 111 112222111 2478999999999997533211111 000 111223579
Q ss_pred EEeeccCCCChhHHHHHHH
Q psy1758 209 ISISAKTGVGINKLLENIS 227 (1527)
Q Consensus 209 ~~iSAktg~gI~eL~~~l~ 227 (1527)
+++||+++.|++++++.+.
T Consensus 155 ~~~Sa~~~~gl~~l~~~l~ 173 (176)
T cd01881 155 VPISAKTEEGLDELIRAIY 173 (176)
T ss_pred EEEehhhhcCHHHHHHHHH
Confidence 9999999999999999885
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.6e-15 Score=179.75 Aligned_cols=148 Identities=24% Similarity=0.343 Sum_probs=111.4
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe-EEEEEeCCChhh---------HHHHHHhhccc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG-SITFLDTPGHEA---------FTAMRARGAKV 139 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~-~i~~iDTPG~e~---------f~~~~~~~~~~ 139 (1527)
|.|+++|.+|+|||||+|+|++..+.....+++|.+.....+.+.+. ++.||||||..+ |... ...++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~t-l~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKAT-LQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHH-HHHhhc
Confidence 79999999999999999999998877777888999988877877665 899999999632 4433 345688
Q ss_pred cCEEEEEEeCCCCCcHHH----HHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCc-EEEeecc
Q psy1758 140 TDIVVLVVAADDGVMPQT----REAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASP-FISISAK 214 (1527)
Q Consensus 140 aD~~IlVvda~~g~~~qt----~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~-v~~iSAk 214 (1527)
||++++|+|+++...... .+.+..+...++|+++|+||+|+.+....... .. .. ..+ ++++||+
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~~~----~~-----~~--~~~~~v~ISAk 345 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRID----RD-----EE--NKPIRVWLSAQ 345 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHHHH----HH-----hc--CCCceEEEeCC
Confidence 999999999998654333 23344444457899999999999653211110 00 01 123 5889999
Q ss_pred CCCChhHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~ 229 (1527)
+|.|+++|++.|...
T Consensus 346 tG~GIdeL~e~I~~~ 360 (426)
T PRK11058 346 TGAGIPLLFQALTER 360 (426)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999754
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.7e-15 Score=173.02 Aligned_cols=153 Identities=22% Similarity=0.262 Sum_probs=110.2
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC-eEEEEEeCCChhh-------HHHHHHhhcccc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH-GSITFLDTPGHEA-------FTAMRARGAKVT 140 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~-~~i~~iDTPG~e~-------f~~~~~~~~~~a 140 (1527)
-..|+++|.+|+|||||+++|+.....++.++++|.+.....+.+++ .+++||||||... +.....+.+..+
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 35799999999999999999999887777888889888888888877 7999999999632 333444556779
Q ss_pred CEEEEEEeCCCC---CcHHHHH-HHHHHH-----HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEe
Q psy1758 141 DIVVLVVAADDG---VMPQTRE-AIAHAK-----ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 141 D~~IlVvda~~g---~~~qt~e-~i~~~~-----~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
|++++|+|+++. ...+..+ +...+. ..+.|+++|+||+|+.+... . ..+.+. ..+.+ ..+++++
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~--~-~~~~~~--l~~~~--~~~vi~i 309 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE--L-AELLKE--LKKAL--GKPVFPI 309 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH--H-HHHHHH--HHHHc--CCcEEEE
Confidence 999999999874 1112222 222222 14689999999999976421 1 111111 01111 2479999
Q ss_pred eccCCCChhHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISL 228 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~ 228 (1527)
||++++|+++|+++|..
T Consensus 310 SAktg~GI~eL~~~I~~ 326 (329)
T TIGR02729 310 SALTGEGLDELLYALAE 326 (329)
T ss_pred EccCCcCHHHHHHHHHH
Confidence 99999999999999864
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.2e-15 Score=158.11 Aligned_cols=157 Identities=19% Similarity=0.212 Sum_probs=106.8
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df 998 (1527)
..++|+++|++|+|||||+++|+.. .+... .....|. +.....+.+++ ..++||||||+.+|
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~--~~~~~------------~~~t~~~--~~~~~~~~~~~~~~~l~i~D~~G~~~~ 65 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSG--TFSER------------QGNTIGV--DFTMKTLEIEGKRVKLQIWDTAGQERF 65 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhC--CCccc------------CCCccce--EEEEEEEEECCEEEEEEEEECCChHHH
Confidence 3579999999999999999999753 11100 0111222 23334455555 57899999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
.......++.+|++++|+|+++....+....| ..... .++|+++|+||+|+...+. ...++.........
T Consensus 66 ~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~----- 139 (165)
T cd01864 66 RTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQRE-VLFEEACTLAEKNG----- 139 (165)
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccc-cCHHHHHHHHHHcC-----
Confidence 99899999999999999999875433333233 33322 3688999999999865432 11222222221111
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
..+++++||++|. |++++++.+.+.
T Consensus 140 -~~~~~e~Sa~~~~----------~v~~~~~~l~~~ 164 (165)
T cd01864 140 -MLAVLETSAKESQ----------NVEEAFLLMATE 164 (165)
T ss_pred -CcEEEEEECCCCC----------CHHHHHHHHHHh
Confidence 1358999999998 999999998765
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.3e-15 Score=157.70 Aligned_cols=154 Identities=17% Similarity=0.205 Sum_probs=105.3
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|.+++|||||+++|+....... ......|.++ ..+.+++..+++|||||+.+|...+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~-------------~~~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~~~~~ 63 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ-------------IIVPTVGFNV----ESFEKGNLSFTAFDMSGQGKYRGLWE 63 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc-------------eecCccccce----EEEEECCEEEEEEECCCCHhhHHHHH
Confidence 589999999999999999975421110 1112233332 33567789999999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHH------HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMP-QTRFVTRKAL------KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~------~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
.+++.+|++|+|+|++++... .....+..+. ..++|+++|+||+|+.++... .++...+. +.. .....
T Consensus 64 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~---~~~~~~l~-~~~-~~~~~ 138 (162)
T cd04157 64 HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTA---VKITQLLG-LEN-IKDKP 138 (162)
T ss_pred HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCH---HHHHHHhC-Ccc-ccCce
Confidence 999999999999999875321 2222223222 247999999999999765321 22222221 111 01223
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
++++.+||++|. |+++++++|.+
T Consensus 139 ~~~~~~Sa~~g~----------gv~~~~~~l~~ 161 (162)
T cd04157 139 WHIFASNALTGE----------GLDEGVQWLQA 161 (162)
T ss_pred EEEEEeeCCCCC----------chHHHHHHHhc
Confidence 568999999998 99999999864
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.9e-15 Score=160.44 Aligned_cols=155 Identities=17% Similarity=0.246 Sum_probs=107.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
...+|+++|++++|||||+++|+... +. ..+...|.. ...+.++++.+++|||||+..|..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~--~~-------------~~~~t~g~~----~~~~~~~~~~l~l~D~~G~~~~~~ 73 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGED--ID-------------TISPTLGFQ----IKTLEYEGYKLNIWDVGGQKTLRP 73 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCC--CC-------------CcCCccccc----eEEEEECCEEEEEEECCCCHHHHH
Confidence 34689999999999999999997541 11 111222322 234556788999999999999998
Q ss_pred HHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHH----HHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKA----LKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~----~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.+...++.+|++++|+|+++.- ..+....+... ...+.|+++|+||+|+.+... .+++.+.+.... ....
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~---~~~~~~~~~~~~--~~~~ 148 (173)
T cd04154 74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALS---EEEIREALELDK--ISSH 148 (173)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCC---HHHHHHHhCccc--cCCC
Confidence 8888999999999999998752 22222222222 225789999999999976432 233333332111 1123
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
.+|++.+||++|. |++++++++.+
T Consensus 149 ~~~~~~~Sa~~g~----------gi~~l~~~l~~ 172 (173)
T cd04154 149 HWRIQPCSAVTGE----------GLLQGIDWLVD 172 (173)
T ss_pred ceEEEeccCCCCc----------CHHHHHHHHhc
Confidence 4689999999998 99999998864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.1e-15 Score=162.53 Aligned_cols=157 Identities=20% Similarity=0.256 Sum_probs=105.7
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|....+.....+++.... ...+..++. .+.+|||||++.|.......++.+|++++|+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 4799999999999999999987776554444433333 223444544 5789999999998877777789999999999
Q ss_pred eCCCCCcHH-----HHHHHHHHHHcCCCEEEEEEcccCCcchhHH-------HHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 148 AADDGVMPQ-----TREAIAHAKISGVPLIVAINKIDKLDINLDR-------IKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 148 da~~g~~~q-----t~e~i~~~~~~~vpiIvviNKiDl~~~~~~~-------~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
|+++....+ |.+.+.. ...++|+++|+||+|+.+..... ... ..........+ +..++|++||++
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~e~Sa~~ 157 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRR-YCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVP-IQQGKRVAKEI-GAKKYMECSALT 157 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEeeChhhhhCcccccccccCCcCC-HHHHHHHHHHh-CCcEEEEccCCC
Confidence 998743222 2332322 22368999999999985421100 000 00000111112 234799999999
Q ss_pred CCChhHHHHHHHHHH
Q psy1758 216 GVGINKLLENISLQA 230 (1527)
Q Consensus 216 g~gI~eL~~~l~~~~ 230 (1527)
|.|++++|+.+....
T Consensus 158 ~~~v~~~f~~l~~~~ 172 (187)
T cd04129 158 GEGVDDVFEAATRAA 172 (187)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999997543
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.4e-15 Score=161.21 Aligned_cols=157 Identities=24% Similarity=0.292 Sum_probs=117.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+..+|+++|..|+|||||+++|....... ..| |.......+.+.+..+.+||.+|+..+...+..++..+|++|+|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~p--T~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfV 88 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIP--TIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFV 88 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEE--ESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCc--ccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEE
Confidence 456789999999999999999998765432 222 33444566777899999999999999999999999999999999
Q ss_pred EeCCCCC-cHHHHHHHHHHH----HcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGV-MPQTREAIAHAK----ISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~-~~qt~e~i~~~~----~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++.. ..+..+.+..+. ..++|++|++||+|+.++.. .++...+...... ....+.++.+||++|+|+.
T Consensus 89 vDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~---~~~~~~v~~~sa~~g~Gv~ 165 (175)
T PF00025_consen 89 VDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLK---NKRPWSVFSCSAKTGEGVD 165 (175)
T ss_dssp EETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTT---SSSCEEEEEEBTTTTBTHH
T ss_pred EecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcc---cCCceEEEeeeccCCcCHH
Confidence 9999732 233444444332 24689999999999987533 3333333222211 1245689999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
+.+++|..+
T Consensus 166 e~l~WL~~~ 174 (175)
T PF00025_consen 166 EGLEWLIEQ 174 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999753
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O) | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-15 Score=141.97 Aligned_cols=85 Identities=24% Similarity=0.422 Sum_probs=78.6
Q ss_pred CCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecce
Q psy1758 1119 NNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIE 1198 (1527)
Q Consensus 1119 ~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~ 1198 (1527)
++||+++||++.+|++.|+++|+|||+|+|++||.|.+.. ...+|+.+|+.++|.++.++++|.|||||+++|++
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-----~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~ 75 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-----EEKIKITELRVFNNGEVVTADTVTAGDIAILTGLK 75 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-----CcEEEeceeEEEeCCCeEECcEECCCCEEEEECCC
Confidence 4799999999999999999999999999999999998753 23478999999999999999999999999999999
Q ss_pred ecccCCeeeC
Q psy1758 1199 EICIGSTICD 1208 (1527)
Q Consensus 1199 ~~~iGdTi~~ 1208 (1527)
++.+||||++
T Consensus 76 ~~~~Gdtl~~ 85 (85)
T cd03690 76 GLRVGDVLGD 85 (85)
T ss_pred CCcCccccCC
Confidence 9999999964
|
This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-15 Score=158.67 Aligned_cols=143 Identities=20% Similarity=0.230 Sum_probs=100.5
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCC----CCc
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH----ADF 998 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh----~df 998 (1527)
++|+++|++|+|||||+++|..... .++ ....+.|.+. ++|||||. .++
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~-----------------~~~--------~~~~v~~~~~--~~iDtpG~~~~~~~~ 54 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYT-----------------LAR--------KTQAVEFNDK--GDIDTPGEYFSHPRW 54 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCc-----------------cCc--------cceEEEECCC--CcccCCccccCCHHH
Confidence 4799999999999999999864310 000 1122233332 37999995 467
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
..++..++..+|++++|+|++++...++..++.. ..+.|+++++||+|+++.+.+. +.+.+.+++ ...|
T Consensus 55 ~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~~~~----~~~~~~~~~-----~~~p 123 (158)
T PRK15467 55 YHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDADVAA----TRKLLLETG-----FEEP 123 (158)
T ss_pred HHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcccHHH----HHHHHHHcC-----CCCC
Confidence 7777778899999999999998765544433332 2467899999999997655432 233222222 1248
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
++++||++|. |+++|++.+.+.++.
T Consensus 124 ~~~~Sa~~g~----------gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 124 IFELNSHDPQ----------SVQQLVDYLASLTKQ 148 (158)
T ss_pred EEEEECCCcc----------CHHHHHHHHHHhchh
Confidence 9999999998 999999999887754
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.7e-15 Score=154.30 Aligned_cols=147 Identities=27% Similarity=0.267 Sum_probs=108.9
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH-
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE- 1001 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e- 1001 (1527)
.+|+++|++|+|||||+++|+....... ...+|+|.......+.+.+.++++|||||+.++...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~ 66 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIV---------------SDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEI 66 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEec---------------cCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchH
Confidence 3799999999999999999986522111 123567777666777888899999999999887543
Q ss_pred -------HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1002 -------VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1002 -------v~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
+...+..+|++++|+|++..........+.. ..+.|+++|+||+|+.+.... ....
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~---------------~~~~ 129 (157)
T cd04164 67 EKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL---------------LSLL 129 (157)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc---------------cccc
Confidence 3346789999999999997544444333333 568999999999998754311 0112
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...|++++||+++. |++.|+++|.+.+
T Consensus 130 ~~~~~~~~Sa~~~~----------~v~~l~~~l~~~~ 156 (157)
T cd04164 130 AGKPIIAISAKTGE----------GLDELKEALLELA 156 (157)
T ss_pred CCCceEEEECCCCC----------CHHHHHHHHHHhh
Confidence 24589999999998 9999999987654
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=188.14 Aligned_cols=152 Identities=21% Similarity=0.291 Sum_probs=118.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHH----------HHhhc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAM----------RARGA 137 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~----------~~~~~ 137 (1527)
+..+|+++|++|+|||||+|+|++.+...++.+|+|.+.....+.+++.++++|||||+.+|... ...++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 34689999999999999999999988888888999999998889999999999999998876431 11222
Q ss_pred --cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 138 --KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 138 --~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
..+|++++|+|+++.. +....+.++.+.++|+++|+||+|+.+.. .....+.+. +.+ .+|++++||+
T Consensus 82 ~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~------~~L--G~pVvpiSA~ 151 (772)
T PRK09554 82 LSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALS------ARL--GCPVIPLVST 151 (772)
T ss_pred hccCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHH------HHh--CCCEEEEEee
Confidence 4789999999999843 33445566778899999999999986422 111112221 122 2589999999
Q ss_pred CCCChhHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~ 229 (1527)
+|+|++++.+.+...
T Consensus 152 ~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 152 RGRGIEALKLAIDRH 166 (772)
T ss_pred cCCCHHHHHHHHHHh
Confidence 999999999998644
|
|
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.9e-15 Score=156.86 Aligned_cols=154 Identities=21% Similarity=0.323 Sum_probs=107.6
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|++++|||||+++++... +... .....+.++......+......++||||||+..|.....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 67 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDG--YEPQ------------QLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHA 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCCC------------cCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhH
Confidence 79999999999999999998541 1100 011223343333334444557899999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEE
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTR-FVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVI 1080 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi 1080 (1527)
.+++.+|++|+|+|++++...+.. .++..+.+. ++|+++|+||+|+.... .++..... ....+|++
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~----~~~~~~~~-------~~~~~~~~ 136 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV----TQKKFNFA-------EKHNLPLY 136 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH----HHHHHHHH-------HHcCCeEE
Confidence 999999999999999876543333 333444443 78999999999985321 11111111 11246899
Q ss_pred EeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1081 YTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1081 ~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
++||++|. |++.+++.+.+.+.
T Consensus 137 ~~Sa~~~~----------gv~~l~~~l~~~~~ 158 (161)
T cd04124 137 YVSAADGT----------NVVKLFQDAIKLAV 158 (161)
T ss_pred EEeCCCCC----------CHHHHHHHHHHHHH
Confidence 99999998 99999999987664
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-14 Score=176.10 Aligned_cols=157 Identities=20% Similarity=0.197 Sum_probs=113.0
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChh----h---HHHHHHhhccccC
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE----A---FTAMRARGAKVTD 141 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e----~---f~~~~~~~~~~aD 141 (1527)
-..|+|+|.||+|||||+++|+......+..+++|++.....+.+.+.+++||||||.. . ......+.+..||
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 46799999999999999999999888778889999999999999999999999999931 1 1222345567899
Q ss_pred EEEEEEeCCCC-----CcHH---HHHHHHHH-----------HHcCCCEEEEEEcccCCcchhHHHHHHHhhhccccccc
Q psy1758 142 IVVLVVAADDG-----VMPQ---TREAIAHA-----------KISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEY 202 (1527)
Q Consensus 142 ~~IlVvda~~g-----~~~q---t~e~i~~~-----------~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~ 202 (1527)
++|+|+|+++. ...+ +.+.+... ...+.|+|||+||+|+.+... ....+... . ...
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e--l~e~l~~~-l--~~~ 313 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE--LAEFVRPE-L--EAR 313 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH--HHHHHHHH-H--HHc
Confidence 99999999751 1111 11122211 234689999999999975321 11111111 0 111
Q ss_pred CCCCcEEEeeccCCCChhHHHHHHHHHHHH
Q psy1758 203 GGASPFISISAKTGVGINKLLENISLQAEI 232 (1527)
Q Consensus 203 ~~~~~v~~iSAktg~gI~eL~~~l~~~~~~ 232 (1527)
.+++|++||+++.|+++|+++|......
T Consensus 314 --g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 314 --GWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred --CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2589999999999999999999866543
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.7e-15 Score=156.64 Aligned_cols=147 Identities=27% Similarity=0.366 Sum_probs=107.5
Q ss_pred EEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH-----
Q psy1758 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE----- 1001 (1527)
Q Consensus 927 IiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e----- 1001 (1527)
++|++|+|||||+++++.... .....+|+|+......+.+++..+++|||||+.+|...
T Consensus 1 l~G~~~~GKssl~~~~~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~ 64 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ----------------KVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEK 64 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc----------------cccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHH
Confidence 589999999999999975421 11123688888888888999999999999999887642
Q ss_pred -HHHHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1002 -VERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1002 -v~~~l~--~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
....+. .+|++++|+|+... .+....+..+.+.++|+++|+||+|+.+.+. ...+....... +.+|
T Consensus 65 ~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~--~~~~~~~~~~~-------~~~~ 133 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRG--IKIDLDKLSEL-------LGVP 133 (158)
T ss_pred HHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhccccc--chhhHHHHHHh-------hCCC
Confidence 334443 89999999999873 3334455566778999999999999975431 11111111111 2358
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
++++||++|. |+..+++.+...
T Consensus 134 ~~~iSa~~~~----------~~~~l~~~l~~~ 155 (158)
T cd01879 134 VVPTSARKGE----------GIDELKDAIAEL 155 (158)
T ss_pred eEEEEccCCC----------CHHHHHHHHHHH
Confidence 9999999998 999999988764
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=170.15 Aligned_cols=160 Identities=28% Similarity=0.310 Sum_probs=113.0
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc---
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF--- 998 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df--- 998 (1527)
...|+++|++|+|||||+|+|++....+ .....++|.......+..++.++.++||||+.+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~---------------vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~ 69 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISI---------------VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRA 69 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceee---------------cCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhH
Confidence 3579999999999999999998652211 1112233333333334445689999999997653
Q ss_pred -----hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 999 -----GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 999 -----~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
...+..++..+|++++|+|++++.......++..+...+.|.++|+||+|+... .+.... ..+.+.+...
T Consensus 70 l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~-~~~l~~-~~~~l~~~~~--- 144 (292)
T PRK00089 70 LNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD-KEELLP-LLEELSELMD--- 144 (292)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC-HHHHHH-HHHHHHhhCC---
Confidence 234556788999999999999977777777777777778999999999999632 122222 2222211111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
..+++++||++|. |++.|++.+.+.+|+
T Consensus 145 --~~~i~~iSA~~~~----------gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 145 --FAEIVPISALKGD----------NVDELLDVIAKYLPE 172 (292)
T ss_pred --CCeEEEecCCCCC----------CHHHHHHHHHHhCCC
Confidence 2468999999998 999999999999875
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=149.70 Aligned_cols=168 Identities=21% Similarity=0.204 Sum_probs=130.3
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC-eEEEEEeCCCCCCchH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGHADFGG 1000 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-~~iniiDTPGh~df~~ 1000 (1527)
.-+|+++|+.++||||++.++.............. ++.. ..|-+|+.....++.+.+ +.+.|.|||||..|.-
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~----~s~k--~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASS----VSGK--GKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKF 83 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccc----cccc--cccceeEeecccceEEcCcceEEEecCCCcHHHHH
Confidence 35899999999999999999987754322111100 1111 145688888888888876 9999999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcC-CccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG-FKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~g-lp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
.++-.++.++++|++||++.+.....++++....... +|.+|++||.|+.++.+.+.+.++.+. . .+..|+
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~----~----~~~~~v 155 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKL----E----LLSVPV 155 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHh----c----cCCCce
Confidence 9999999999999999999976665677788877777 999999999999999876555554431 1 146799
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhh-cCC
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKY-VPV 1113 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~-lp~ 1113 (1527)
+..+|.+++ +..+.++.+..+ .+.
T Consensus 156 i~~~a~e~~----------~~~~~L~~ll~~~~~~ 180 (187)
T COG2229 156 IEIDATEGE----------GARDQLDVLLLKDLLG 180 (187)
T ss_pred eeeecccch----------hHHHHHHHHHhhcccC
Confidence 999999998 777888877665 443
|
|
| >KOG0083|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.4e-16 Score=149.64 Aligned_cols=181 Identities=21% Similarity=0.257 Sum_probs=124.7
Q ss_pred EEecCCCChhHHHHHHHcccccc-ccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCC
Q psy1758 74 IMGHVDHGKTSLLDYIRKTNVVF-SEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAAD 150 (1527)
Q Consensus 74 IvG~~~~GKTSLl~~L~~~~~~~-~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~ 150 (1527)
++|++++|||+|+-++..+.|.. +-..+..+|+....++.++. ++++|||+|||+|++....+++.+|..++++|+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 68999999999998887776633 33345556666666666554 7889999999999999999999999999999999
Q ss_pred CCCcHHHH----HHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHH
Q psy1758 151 DGVMPQTR----EAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226 (1527)
Q Consensus 151 ~g~~~qt~----e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l 226 (1527)
+....... ..+.......+.+.+++||+|+.........+ -....+.+ ..||.++||+||.|++-.|-.|
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~dd----g~kla~~y--~ipfmetsaktg~nvd~af~~i 155 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDD----GEKLAEAY--GIPFMETSAKTGFNVDLAFLAI 155 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccch----HHHHHHHH--CCCceeccccccccHhHHHHHH
Confidence 86654433 33334445567799999999996521110000 00111223 2699999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEE
Q psy1758 227 SLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATV 262 (1527)
Q Consensus 227 ~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~ 262 (1527)
...........+++..+. ..++..+.++|.++.+
T Consensus 156 a~~l~k~~~~~~~~~~~~--~~~~v~~~~k~eia~c 189 (192)
T KOG0083|consen 156 AEELKKLKMGAPPEGEFA--DHDSVADEGKGEIARC 189 (192)
T ss_pred HHHHHHhccCCCCCCccc--cchhHHhcCCCccccc
Confidence 865544444555444332 2334456677766643
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.7e-15 Score=159.92 Aligned_cols=155 Identities=19% Similarity=0.154 Sum_probs=109.8
Q ss_pred cccccccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEe
Q psy1758 912 LFLSDENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIID 991 (1527)
Q Consensus 912 i~lsq~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiD 991 (1527)
+.+.+.+.++..+|+|+|++|+|||||+++|+..... . ......|.|..... +.++ ..+.+||
T Consensus 8 ~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~-~-------------~~~~~~~~t~~~~~--~~~~-~~~~liD 70 (179)
T TIGR03598 8 VKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKL-A-------------RTSKTPGRTQLINF--FEVN-DGFRLVD 70 (179)
T ss_pred ccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-c-------------cccCCCCcceEEEE--EEeC-CcEEEEe
Confidence 3455666778889999999999999999999865211 0 01122455554433 2233 3799999
Q ss_pred CCCCC----------CchHHHHHHHH---hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCC-Chhhh
Q psy1758 992 TPGHA----------DFGGEVERILS---MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-RPEWV 1057 (1527)
Q Consensus 992 TPGh~----------df~~ev~~~l~---~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a-~~~~v 1057 (1527)
|||+. +|...+..+++ .+|++++|+|++.+...++..+++.+...++|+++|+||+|+... +.+..
T Consensus 71 tpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~ 150 (179)
T TIGR03598 71 LPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQ 150 (179)
T ss_pred CCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHH
Confidence 99963 23444444454 468999999999999889988888888899999999999998643 23445
Q ss_pred HHHHHHHHhhhcccccccCCcEEEeccccCC
Q psy1758 1058 VDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088 (1527)
Q Consensus 1058 ~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~ 1088 (1527)
.+++++.+... ...++++++||++|+
T Consensus 151 ~~~i~~~l~~~-----~~~~~v~~~Sa~~g~ 176 (179)
T TIGR03598 151 LKKIKKALKKD-----ADDPSVQLFSSLKKT 176 (179)
T ss_pred HHHHHHHHhhc-----cCCCceEEEECCCCC
Confidence 56666555432 123579999999998
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >KOG1423|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=161.07 Aligned_cols=172 Identities=26% Similarity=0.301 Sum_probs=123.6
Q ss_pred ccccCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCC------hhhH------H
Q psy1758 64 ESLVRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPG------HEAF------T 130 (1527)
Q Consensus 64 ~~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG------~e~f------~ 130 (1527)
+...+...|+++|.||+|||||.|.+.+..+ +++....+|++-....++.+..++.|+|||| |... .
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 4456788999999999999999999999885 7788888999988899999999999999999 2222 2
Q ss_pred HHHHhhccccCEEEEEEeCCC---CCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHH--H------------HHHHh
Q psy1758 131 AMRARGAKVTDIVVLVVAADD---GVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR--I------------KQDLI 193 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~---g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~--~------------~~~l~ 193 (1527)
.....++..||++++|+|+++ ...++....+... .++|-|+|.||+|.......- . +.++.
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 234467789999999999996 2334444444332 478999999999987522100 0 00111
Q ss_pred hhc-ccc--------cccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcC
Q psy1758 194 SEQ-VIP--------EEYGGASPFISISAKTGVGINKLLENISLQAEILELKA 237 (1527)
Q Consensus 194 ~~~-~~~--------~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~ 237 (1527)
+.. ..+ ..|..+..+|++||++|+||++|.++|..++...+++.
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y 277 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKY 277 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCC
Confidence 000 000 11344567999999999999999999987765444443
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-14 Score=173.76 Aligned_cols=151 Identities=22% Similarity=0.242 Sum_probs=109.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC-CeEEEEEeCCChhh-------HHHHHHhhccccC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN-HGSITFLDTPGHEA-------FTAMRARGAKVTD 141 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~-~~~i~~iDTPG~e~-------f~~~~~~~~~~aD 141 (1527)
..|+++|.||||||||+++|++.....+..+++|.+.....+.+. +..++||||||... +.....+.+..+|
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 379999999999999999999988777788899999988888877 67899999999521 2233344566799
Q ss_pred EEEEEEeCCCC----CcHHHHHHHHHHHH-----cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEee
Q psy1758 142 IVVLVVAADDG----VMPQTREAIAHAKI-----SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISIS 212 (1527)
Q Consensus 142 ~~IlVvda~~g----~~~qt~e~i~~~~~-----~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iS 212 (1527)
++++|+|+++. ...+...+...+.. .+.|++||+||+|+.... .....+... ++ .+++++|
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~--e~l~~l~~~------l~--~~i~~iS 308 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAE--ENLEEFKEK------LG--PKVFPIS 308 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCH--HHHHHHHHH------hC--CcEEEEe
Confidence 99999999753 11222222233322 478999999999985421 111222111 11 4799999
Q ss_pred ccCCCChhHHHHHHHHHH
Q psy1758 213 AKTGVGINKLLENISLQA 230 (1527)
Q Consensus 213 Aktg~gI~eL~~~l~~~~ 230 (1527)
|++++|+++|++.|....
T Consensus 309 A~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 309 ALTGQGLDELLYAVAELL 326 (424)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999997543
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=152.16 Aligned_cols=152 Identities=26% Similarity=0.346 Sum_probs=114.2
Q ss_pred EEecCCCChhHHHHHHHccccc-cccCCceeEEEEEEEEEeC-CeEEEEEeCCChhhHH-------HHHHhhccccCEEE
Q psy1758 74 IMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTN-HGSITFLDTPGHEAFT-------AMRARGAKVTDIVV 144 (1527)
Q Consensus 74 IvG~~~~GKTSLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~-~~~i~~iDTPG~e~f~-------~~~~~~~~~aD~~I 144 (1527)
++|++|+|||||++++.+.... .+..+++|........... ...+.||||||+..+. ......++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999987664 6666777777777766665 6689999999976654 33445778999999
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 145 LVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 145 lVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
+|+|+.+.........+......+.|+++|+||+|+...+....... ............+++++||+++.|++++++
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~ 157 (163)
T cd00880 81 FVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLE---LRLLILLLLLGLPVIAVSALTGEGIDELRE 157 (163)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHH---HHHhhcccccCCceEEEeeeccCCHHHHHH
Confidence 99999998776666656666678999999999999976432222110 001111223457999999999999999999
Q ss_pred HHHH
Q psy1758 225 NISL 228 (1527)
Q Consensus 225 ~l~~ 228 (1527)
++..
T Consensus 158 ~l~~ 161 (163)
T cd00880 158 ALIE 161 (163)
T ss_pred HHHh
Confidence 9864
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=164.25 Aligned_cols=172 Identities=22% Similarity=0.188 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHhC---ChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccccceeeecccccceecc
Q psy1758 832 IRVLSEDIGKMLG---CGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLSDLLSKRFLH 908 (1527)
Q Consensus 832 irsl~~dig~~l~---~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~lP~i~l~d~~~~~i~n 908 (1527)
++.++++.-..|. ++..+.+|||..+|++ |..+.++.+ .+.+|-.+...|..+|.++++
T Consensus 106 i~~l~~eYi~~lk~a~~~~~~~~lrR~a~GR~----aSiik~i~~-----~L~fL~~~r~~l~~LP~Idp~--------- 167 (346)
T COG1084 106 IEKLAREYIRLLKAAKDPKEANQLRRQAFGRV----ASIIKKIDD-----DLEFLRKARDHLKKLPAIDPD--------- 167 (346)
T ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH----HHHHHHhhH-----HHHHHHHHHHHHhcCCCCCCC---------
Confidence 5666666666676 7899999999999999 666766633 244566666677788876644
Q ss_pred CcccccccccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEE
Q psy1758 909 GQNLFLSDENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRIN 988 (1527)
Q Consensus 909 G~~i~lsq~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~in 988 (1527)
.++|.|.|+||+|||||+.+++.....+..++++. -....++|++++.+++
T Consensus 168 -------------~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTT----------------K~i~vGhfe~~~~R~Q 218 (346)
T COG1084 168 -------------LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTT----------------KGIHVGHFERGYLRIQ 218 (346)
T ss_pred -------------CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccc----------------cceeEeeeecCCceEE
Confidence 25899999999999999999999988888887753 3334589999999999
Q ss_pred EEeCCCCCCch--------HHHHHHH-HhcCEEEEEEeCCCC----CChhHHHHHHHHH-HcCCccEEEEeccCCCC
Q psy1758 989 IIDTPGHADFG--------GEVERIL-SMVDNVLLLIDAVEG----PMPQTRFVTRKAL-KLGFKPIVVVNKIDRSN 1051 (1527)
Q Consensus 989 iiDTPGh~df~--------~ev~~~l-~~aD~ailVVDa~~G----~~~qt~~~~~~~~-~~glp~IvviNKiD~~~ 1051 (1527)
+|||||.-|-. .....+| ...+.+++++|+++- +..|-. +|+... .++.|+++|+||+|..+
T Consensus 219 vIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~-L~~eIk~~f~~p~v~V~nK~D~~~ 294 (346)
T COG1084 219 VIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQIS-LLEEIKELFKAPIVVVINKIDIAD 294 (346)
T ss_pred EecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHH-HHHHHHHhcCCCeEEEEecccccc
Confidence 99999987721 1222334 456789999999862 334443 344333 45788999999999864
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-14 Score=158.69 Aligned_cols=155 Identities=14% Similarity=0.149 Sum_probs=111.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
...+|+++|++|+|||||++++..+.+...+.+++..++....+..++ ..+.+|||||++.|..++..++..+|++++
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~ 87 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAII 87 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEE
Confidence 447899999999999999998877777666666665555554444443 478899999999999999888999999999
Q ss_pred EEeCCCCCcHHHHHHH-HHHH--HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 146 VVAADDGVMPQTREAI-AHAK--ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 146 Vvda~~g~~~qt~e~i-~~~~--~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
|+|.++....+....| ..+. ..++|+++++||+|+.+.........+. .. ....++++||++|.|++++
T Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~------~~--~~~~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 88 MFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFH------RK--KNLQYYDISAKSNYNFEKP 159 (215)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHH------HH--cCCEEEEEeCCCCCCHHHH
Confidence 9999985544333222 1111 2468999999999986422111111111 11 1247999999999999999
Q ss_pred HHHHHHHH
Q psy1758 223 LENISLQA 230 (1527)
Q Consensus 223 ~~~l~~~~ 230 (1527)
|.+|+...
T Consensus 160 f~~ia~~l 167 (215)
T PTZ00132 160 FLWLARRL 167 (215)
T ss_pred HHHHHHHH
Confidence 99997543
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-14 Score=174.02 Aligned_cols=156 Identities=18% Similarity=0.195 Sum_probs=112.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe-EEEEEeCCChhh-------HHHHHHhhccccC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG-SITFLDTPGHEA-------FTAMRARGAKVTD 141 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~-~i~~iDTPG~e~-------f~~~~~~~~~~aD 141 (1527)
.-|+|+|.||+|||||+|+|++....++..+++|+......+.+.+. .+.|+||||.-. ......+.+..+|
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 36999999999999999999998888888999999999988888764 699999999421 2333445688999
Q ss_pred EEEEEEeCCC----CCcHHHHHHHHHHHH-----cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEee
Q psy1758 142 IVVLVVAADD----GVMPQTREAIAHAKI-----SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISIS 212 (1527)
Q Consensus 142 ~~IlVvda~~----g~~~qt~e~i~~~~~-----~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iS 212 (1527)
++++|+|++. ....+...++..+.. .+.|+++|+||+|+.... .....+... ...+....+++++|
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~--el~~~l~~l---~~~~~~~~~Vi~IS 314 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEE--EAEERAKAI---VEALGWEGPVYLIS 314 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChH--HHHHHHHHH---HHHhCCCCCEEEEE
Confidence 9999999872 122222333333333 368999999999996532 111111110 01111123789999
Q ss_pred ccCCCChhHHHHHHHHHH
Q psy1758 213 AKTGVGINKLLENISLQA 230 (1527)
Q Consensus 213 Aktg~gI~eL~~~l~~~~ 230 (1527)
|+++.|+++|++.|....
T Consensus 315 A~tg~GIdeLl~~I~~~L 332 (390)
T PRK12298 315 AASGLGVKELCWDLMTFI 332 (390)
T ss_pred CCCCcCHHHHHHHHHHHh
Confidence 999999999999997654
|
|
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.9e-15 Score=155.81 Aligned_cols=152 Identities=15% Similarity=0.147 Sum_probs=103.8
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|++++|||||+++|.... +.. .....|.+ ...+.+.+..++||||||+.+|...+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~--~~~-------------~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 61 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGE--VVT-------------TIPTIGFN----VETVTYKNLKFQVWDLGGQTSIRPYWR 61 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCC--CcC-------------cCCccCcC----eEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 48999999999999999996431 110 01111222 234567788999999999999998888
Q ss_pred HHHHhcCEEEEEEeCCCCCC-hhHHHHHHH-HH---HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1004 RILSMVDNVLLLIDAVEGPM-PQTRFVTRK-AL---KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~-~qt~~~~~~-~~---~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
.++..+|++|+|+|+++... ......+.. .. ..++|+++|+||+|+.++.. ..++...+.... .....++
T Consensus 62 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~---~~~i~~~~~~~~--~~~~~~~ 136 (158)
T cd04151 62 CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS---EAEISEKLGLSE--LKDRTWS 136 (158)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC---HHHHHHHhCccc--cCCCcEE
Confidence 99999999999999987421 112222322 22 23789999999999976531 122322221111 1122457
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
++++||++|. |++++++.+.+
T Consensus 137 ~~~~Sa~~~~----------gi~~l~~~l~~ 157 (158)
T cd04151 137 IFKTSAIKGE----------GLDEGMDWLVN 157 (158)
T ss_pred EEEeeccCCC----------CHHHHHHHHhc
Confidence 9999999998 99999998864
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.6e-15 Score=185.52 Aligned_cols=144 Identities=24% Similarity=0.340 Sum_probs=112.1
Q ss_pred ecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHH------HHhh--ccccCEEEEEE
Q psy1758 76 GHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAM------RARG--AKVTDIVVLVV 147 (1527)
Q Consensus 76 G~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~------~~~~--~~~aD~~IlVv 147 (1527)
|.+|+|||||+|+|++.....++.+|+|++.....+.+++.++++|||||+++|... ...+ ...+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 899999999999999998888889999999998888898889999999999877542 2222 24789999999
Q ss_pred eCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHH-HHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHH
Q psy1758 148 AADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRI-KQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226 (1527)
Q Consensus 148 da~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~-~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l 226 (1527)
|+++ .+++.....++...++|+++|+||+|+.+...... .+.+.+ .+ .+|++++||++|+|++++++.+
T Consensus 81 Dat~--ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~------~l--g~pvv~tSA~tg~Gi~eL~~~i 150 (591)
T TIGR00437 81 DASN--LERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEE------RL--GVPVVPTSATEGRGIERLKDAI 150 (591)
T ss_pred cCCc--chhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHH------Hc--CCCEEEEECCCCCCHHHHHHHH
Confidence 9987 23445555566678999999999999854221111 111211 12 2589999999999999999999
Q ss_pred HHH
Q psy1758 227 SLQ 229 (1527)
Q Consensus 227 ~~~ 229 (1527)
...
T Consensus 151 ~~~ 153 (591)
T TIGR00437 151 RKA 153 (591)
T ss_pred HHH
Confidence 754
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.5e-15 Score=140.77 Aligned_cols=94 Identities=59% Similarity=1.031 Sum_probs=90.7
Q ss_pred CceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceeeeEeEeeccCCceeeecCCCcceEecCCCCCCCCCCeEEEe
Q psy1758 243 AKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVI 322 (1527)
Q Consensus 243 ~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~ 322 (1527)
++++|+|+..++++|++++++|++|+|++||++++|..++|||+|.+.+|+.+++|+|++++.+.||++.|.+||.|+++
T Consensus 1 a~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~GkVr~~~d~~g~~v~~a~Ps~~v~i~g~~~~p~aGd~~~~~ 80 (95)
T cd03701 1 AEGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTYGKIRTMVDENGKALLEAGPSTPVEILGLKDVPKAGDGVLVV 80 (95)
T ss_pred CeEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCccceEEEEECCCCCCccccCCCCCEEEeeecCCccCCCEEEEe
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhh
Q psy1758 323 LNEKKAREIGLFRQ 336 (1527)
Q Consensus 323 ~~e~~a~~~~~~~~ 336 (1527)
.++++|++++++|+
T Consensus 81 ~~e~~a~~~~~~r~ 94 (95)
T cd03701 81 ASEKEAKEIGSYRL 94 (95)
T ss_pred CCCHHHHHhhHhhc
Confidence 99999999987764
|
IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=155.04 Aligned_cols=158 Identities=17% Similarity=0.234 Sum_probs=110.0
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|++++|||||+++|++..-.. ...+..|.+.......+...+..++||||||+..|....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE--------------NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHH
Confidence 379999999999999999998652110 112333444444445555556789999999999998888
Q ss_pred HHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1003 ERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
...++.+|++++|+|+++.. ..+...++..+... ++|+++++||+|+..... ...++....... ..++
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~~~ 139 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQ-VSTEEAQEYADE-------NGLL 139 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCc-CCHHHHHHHHHH-------cCCE
Confidence 88889999999999998642 22333444444443 478899999999874321 112222222221 2357
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
++++||++|. |+.++++.+.+.+|
T Consensus 140 ~~~~Sa~~~~----------~v~~l~~~l~~~l~ 163 (163)
T cd01860 140 FFETSAKTGE----------NVNELFTEIAKKLP 163 (163)
T ss_pred EEEEECCCCC----------CHHHHHHHHHHHhC
Confidence 9999999998 99999999998874
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-15 Score=140.19 Aligned_cols=78 Identities=50% Similarity=0.879 Sum_probs=74.8
Q ss_pred EeEEEeEEEEcCCCCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccccchhhhhhhh
Q psy1758 474 GLAEIRQVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLSRIENQIQR 551 (1527)
Q Consensus 474 g~a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~r~~~~i~~ 551 (1527)
|+|+|+++|++++.|+||||+|++|.+++|+.++|+|+++++|+|+|.||+|++++|+++.+|+|||+.++.+++|++
T Consensus 1 g~~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~d~~~ 78 (84)
T cd03692 1 GEAEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFNDIKV 78 (84)
T ss_pred CEEEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcccCCC
Confidence 789999999998888999999999999999999999999999999999999999999999999999999998887775
|
The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits. |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=159.28 Aligned_cols=161 Identities=17% Similarity=0.208 Sum_probs=105.4
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEE-EecCeEEEEEeCCCCCCchHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSI-EYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~-~~~~~~iniiDTPGh~df~~e 1001 (1527)
.+|+++|++|+|||||+++++..... .. ....|.+........ .+.+..+++|||||+..|...
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~-~~--------------~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 68 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV-NT--------------VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPL 68 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC-Cc--------------CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHH
Confidence 47999999999999999999754211 00 011233322221111 335678999999999999888
Q ss_pred HHHHHHhcCEEEEEEeCCCCCCh-hHH----HHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMP-QTR----FVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~-qt~----~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
+...++.+|++|+|+|+++.-.. ... .++......++|+++|+||+|+...... +++...+ .+........
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~---~~~~~~~-~~~~~~~~~~ 144 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSV---SEVEKLL-ALHELSASTP 144 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCH---HHHHHHh-CccccCCCCc
Confidence 88889999999999999874211 111 1222233457999999999998653221 2222211 1111111123
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
++++++||++|. |++++++.|.+.+-
T Consensus 145 ~~~~~~SA~~~~----------gi~~l~~~l~~~l~ 170 (183)
T cd04152 145 WHVQPACAIIGE----------GLQEGLEKLYEMIL 170 (183)
T ss_pred eEEEEeecccCC----------CHHHHHHHHHHHHH
Confidence 578999999998 99999999987763
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.8e-14 Score=146.25 Aligned_cols=158 Identities=21% Similarity=0.303 Sum_probs=125.7
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccc-------cccCCc---eeEEEEEEEEEeCC-eEEEEEeCCChhhHHHHHH
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVV-------FSEAGG---ITQHIGAYNVVTNH-GSITFLDTPGHEAFTAMRA 134 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~-------~~~~~g---iT~~~~~~~~~~~~-~~i~~iDTPG~e~f~~~~~ 134 (1527)
..+..+|++.|+.++||||++.+++..... .....+ +|.......+...+ ..+.++|||||++|.-|+.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence 356789999999999999999999876531 111223 67766666676666 7899999999999999999
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcC-CCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeec
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISG-VPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~-vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSA 213 (1527)
..++.++++|+++|.+.+......+.+......+ +|++|++||.|+.++.+.+...++..... ...|+++++|
T Consensus 87 ~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~------~~~~vi~~~a 160 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLEL------LSVPVIEIDA 160 (187)
T ss_pred HHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhcc------CCCceeeeec
Confidence 9999999999999999977766677777777777 89999999999998765544444433321 2469999999
Q ss_pred cCCCChhHHHHHHHHH
Q psy1758 214 KTGVGINKLLENISLQ 229 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~ 229 (1527)
..++|..+.++.+...
T Consensus 161 ~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 161 TEGEGARDQLDVLLLK 176 (187)
T ss_pred ccchhHHHHHHHHHhh
Confidence 9999999998888643
|
|
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-14 Score=153.26 Aligned_cols=156 Identities=21% Similarity=0.278 Sum_probs=103.6
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|.+|+|||||++++++........+.. +... .....+......+++|||||+.+|...+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 67 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI--------------EDSY-TKQCEIDGQWAILDILDTAGQEEFSAMR 67 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCc--------------cceE-EEEEEECCEEEEEEEEECCCCcchhHHH
Confidence 489999999999999999998653211111110 0000 1111222233578999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMPQT-RFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
...++.+|++++|+|+++....+. ..++.... ..++|+++|+||+|+...... ..++...... ...+
T Consensus 68 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~-~~~~~~~~~~-------~~~~ 139 (164)
T cd04145 68 EQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKV-SREEGQELAR-------KLKI 139 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccccccee-cHHHHHHHHH-------HcCC
Confidence 999999999999999987432221 22222222 247899999999998654311 1112222111 1245
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
|++++||++|. |++++++.+++.+
T Consensus 140 ~~~~~Sa~~~~----------~i~~l~~~l~~~~ 163 (164)
T cd04145 140 PYIETSAKDRL----------NVDKAFHDLVRVI 163 (164)
T ss_pred cEEEeeCCCCC----------CHHHHHHHHHHhh
Confidence 79999999998 9999999998754
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >KOG0091|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.7e-15 Score=148.39 Aligned_cols=155 Identities=16% Similarity=0.176 Sum_probs=112.4
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC---eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH---GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~---~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
..+..++|++-+|||||+..++.+.++.-..|+...|+....++... .++++|||+|||+|.+.+..+++++-++++
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll 87 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL 87 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence 45789999999999999999999998776677777777665555433 278999999999999999999999999999
Q ss_pred EEeCCCCCcHHHHHHH-HHHH---H-cCCC-EEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQTREAI-AHAK---I-SGVP-LIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt~e~i-~~~~---~-~~vp-iIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|.++...-.-.+.| ..+. . ...+ +.+|+.|+|+..... +..+..+. ..... ...|+++||++|.||
T Consensus 88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq--Vt~EEaEk--lAa~h--gM~FVETSak~g~NV 161 (213)
T KOG0091|consen 88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ--VTAEEAEK--LAASH--GMAFVETSAKNGCNV 161 (213)
T ss_pred EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcc--ccHHHHHH--HHHhc--CceEEEecccCCCcH
Confidence 9999985433332222 2221 1 2233 679999999975221 11111111 11112 247999999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
++.|+.|...
T Consensus 162 eEAF~mlaqe 171 (213)
T KOG0091|consen 162 EEAFDMLAQE 171 (213)
T ss_pred HHHHHHHHHH
Confidence 9999999743
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=186.90 Aligned_cols=152 Identities=22% Similarity=0.293 Sum_probs=115.8
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH-
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE- 1001 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e- 1001 (1527)
.+|+++||+|+|||||+|+|++... .+....|+|++.+...+.+++++++++||||+.+|...
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~----------------~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~ 67 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ----------------RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTIS 67 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC----------------ccCCCCCceEeeEEEEEEcCceEEEEEECCCcccccccc
Confidence 5899999999999999999975411 11234799999999999999999999999999888532
Q ss_pred -------H--HHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCC-ChhhhHHHHHHHHhhhc
Q psy1758 1002 -------V--ERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-RPEWVVDATFDLFDKLC 1069 (1527)
Q Consensus 1002 -------v--~~~l--~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a-~~~~v~~~~~~~~~~l~ 1069 (1527)
. ...+ ..+|++++|+|+++. .+....+.++.+.++|+++|+||+|+.+. ......+++.+
T Consensus 68 ~~~s~~E~i~~~~l~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~------ 139 (772)
T PRK09554 68 SQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSA------ 139 (772)
T ss_pred ccccHHHHHHHHHHhccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHH------
Confidence 1 1122 378999999999874 33445667788899999999999998643 22222233322
Q ss_pred ccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1070 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1070 ~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.+++|++++||++|. |++++.+.+.+..+
T Consensus 140 ----~LG~pVvpiSA~~g~----------GIdeL~~~I~~~~~ 168 (772)
T PRK09554 140 ----RLGCPVIPLVSTRGR----------GIEALKLAIDRHQA 168 (772)
T ss_pred ----HhCCCEEEEEeecCC----------CHHHHHHHHHHhhh
Confidence 235689999999998 99999999877653
|
|
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-14 Score=153.36 Aligned_cols=155 Identities=20% Similarity=0.164 Sum_probs=106.2
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|++++|||||+++|+........ ....|.........+......++||||||+.+|.....
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~ 67 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDS--------------QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTR 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC--------------CCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHH
Confidence 7999999999999999999865221111 11122333333333333346789999999999999889
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHHHHH-HHHH---HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTRFVT-RKAL---KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~---~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
..++.+|++++|+|++++...+....| .... ..++|+++|.||+|+...+. ...++....... ..+++
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~~~~ 139 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQRE-VTFLEASRFAQE-------NGLLF 139 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhcc-CCHHHHHHHHHH-------cCCEE
Confidence 999999999999999986544333233 3332 24789999999999865321 112222222221 12579
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
+.+||++|. |++++++.+.+.
T Consensus 140 ~~~Sa~~~~----------~i~~~~~~~~~~ 160 (161)
T cd04113 140 LETSALTGE----------NVEEAFLKCARS 160 (161)
T ss_pred EEEECCCCC----------CHHHHHHHHHHh
Confidence 999999998 999999998764
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.6e-14 Score=156.14 Aligned_cols=146 Identities=17% Similarity=0.158 Sum_probs=101.7
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC-------CeEEEEEeCCChhhHHHHHHhhccccCE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN-------HGSITFLDTPGHEAFTAMRARGAKVTDI 142 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~-------~~~i~~iDTPG~e~f~~~~~~~~~~aD~ 142 (1527)
.+|+++|+.++|||||++++.+..+...+.+++..++....+.++ ...+.||||+|++.|..++..+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 379999999999999999999998877777766655554444442 2368899999999999999999999999
Q ss_pred EEEEEeCCCCCcH----HHHHHHHHHH-------------------HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccc
Q psy1758 143 VVLVVAADDGVMP----QTREAIAHAK-------------------ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIP 199 (1527)
Q Consensus 143 ~IlVvda~~g~~~----qt~e~i~~~~-------------------~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~ 199 (1527)
+|+|+|+++.... .|.+.+.... ..++|++||+||+|+.+.........+.....+.
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 9999999995433 2333232210 1368999999999996532111112222222333
Q ss_pred cccCCCCcEEEeeccCCC
Q psy1758 200 EEYGGASPFISISAKTGV 217 (1527)
Q Consensus 200 ~~~~~~~~v~~iSAktg~ 217 (1527)
.+++ .|.+..++.+..
T Consensus 161 ~~~~--~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGN--AEEINLNCTNGR 176 (202)
T ss_pred HhcC--CceEEEecCCcc
Confidence 3333 467777777653
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-14 Score=152.76 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=106.7
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|++|+|||||+++++... ... ....-|++ ...+.+++..+++|||||+..|.....
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~--~~~-------------~~~t~~~~----~~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE--VVT-------------TIPTIGFN----VETVEYKNVSFTVWDVGGQDKIRPLWK 61 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC--CCC-------------CCCCcCcc----eEEEEECCEEEEEEECCCChhhHHHHH
Confidence 58999999999999999998653 110 01112232 344667789999999999999988888
Q ss_pred HHHHhcCEEEEEEeCCCC-CChhHHHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1004 RILSMVDNVLLLIDAVEG-PMPQTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G-~~~qt~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
..+..+|++++|+|++.+ ...+....+.... ..+.|+++|+||+|+...+. .+++...+.... .....+|
T Consensus 62 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~---~~~~~~~~~~~~--~~~~~~~ 136 (158)
T cd00878 62 HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALS---VSELIEKLGLEK--ILGRRWH 136 (158)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccC---HHHHHHhhChhh--ccCCcEE
Confidence 899999999999999975 2223333333332 35789999999999976441 223333221111 1123468
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
++.+||++|. |++++++.|..
T Consensus 137 ~~~~Sa~~~~----------gv~~~~~~l~~ 157 (158)
T cd00878 137 IQPCSAVTGD----------GLDEGLDWLLQ 157 (158)
T ss_pred EEEeeCCCCC----------CHHHHHHHHhh
Confidence 9999999998 99999998864
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-14 Score=136.12 Aligned_cols=83 Identities=19% Similarity=0.207 Sum_probs=76.9
Q ss_pred ceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecc
Q psy1758 1122 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC 1201 (1527)
Q Consensus 1122 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~ 1201 (1527)
|.++|||+++|+|.|+++++||++|+|++||.|.+... ....+|.+|+.++|.++.++++|.||||++++|++++.
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~----~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~ 76 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNT----GKKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQTR 76 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCC----CCEEEeeEEEEEECCCceECCeeCCCCEEEEECCCCcc
Confidence 57899999999999999999999999999999998755 23578999999999999999999999999999999999
Q ss_pred cCCeeeC
Q psy1758 1202 IGSTICD 1208 (1527)
Q Consensus 1202 iGdTi~~ 1208 (1527)
+|||||.
T Consensus 77 ~Gdtl~~ 83 (83)
T cd04092 77 TGDTLVT 83 (83)
T ss_pred cCCEEeC
Confidence 9999974
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-14 Score=158.02 Aligned_cols=158 Identities=17% Similarity=0.195 Sum_probs=108.6
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|+.|+|||||+++|.... +... ..|+......+.+.+..++++||||+.+|...
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~--~~~~-----------------~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~ 79 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDR--LAQH-----------------VPTLHPTSEELTIGNIKFKTFDLGGHEQARRL 79 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC--Cccc-----------------CCccCcceEEEEECCEEEEEEECCCCHHHHHH
Confidence 4689999999999999999997531 1100 11222334567778899999999999999888
Q ss_pred HHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcc------
Q psy1758 1002 VERILSMVDNVLLLIDAVEGP-MPQTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA------ 1070 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~------ 1070 (1527)
+..+++.+|++++|+|+++.- .......+.... ..+.|+++|+||+|+..+... ++++..+.....
T Consensus 80 ~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~ 156 (190)
T cd00879 80 WKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSE---EELRQALGLYGTTTGKGV 156 (190)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCH---HHHHHHhCcccccccccc
Confidence 888899999999999998642 122222333222 246899999999998654322 333333321110
Q ss_pred ---cccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1071 ---TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1071 ---~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
......++++.+||++|. |++++++++.+++
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~~~----------gv~e~~~~l~~~~ 190 (190)
T cd00879 157 SLKVSGIRPIEVFMCSVVKRQ----------GYGEAFRWLSQYL 190 (190)
T ss_pred cccccCceeEEEEEeEecCCC----------ChHHHHHHHHhhC
Confidence 011123578999999998 9999999997653
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >KOG1191|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-14 Score=167.57 Aligned_cols=177 Identities=24% Similarity=0.254 Sum_probs=128.6
Q ss_pred hhhhhhcccCcccccccCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCCh---
Q psy1758 51 SFLLNEYNKNITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGH--- 126 (1527)
Q Consensus 51 ~~~~~~l~~~~~~~~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~--- 126 (1527)
+.+..++...+..+....++.|+|+|+||+|||||+|+|.+.+. ++++.+|+|+|.....++.+|.++.+.||+|.
T Consensus 250 d~v~s~l~~~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~ 329 (531)
T KOG1191|consen 250 DDVLSHLNKADEIERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREE 329 (531)
T ss_pred HHHHHHHHhhhhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccc
Confidence 34455566667778888999999999999999999999998874 89999999999999999999999999999994
Q ss_pred -----hhHHHHHH-hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHc------------CCCEEEEEEcccCCcchhHHH
Q psy1758 127 -----EAFTAMRA-RGAKVTDIVVLVVAADDGVMPQTREAIAHAKIS------------GVPLIVAINKIDKLDINLDRI 188 (1527)
Q Consensus 127 -----e~f~~~~~-~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~------------~vpiIvviNKiDl~~~~~~~~ 188 (1527)
|...-++. ..+..||++++|+|+..+...+.....+.+... ..|++++.||+|+...-....
T Consensus 330 ~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~ 409 (531)
T KOG1191|consen 330 SNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMT 409 (531)
T ss_pred cCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcccccc
Confidence 33333333 456899999999999776655555544443322 357899999999865211000
Q ss_pred HHHHhhhccccc-ccC-CCCcEEEeeccCCCChhHHHHHHHHHHH
Q psy1758 189 KQDLISEQVIPE-EYG-GASPFISISAKTGVGINKLLENISLQAE 231 (1527)
Q Consensus 189 ~~~l~~~~~~~~-~~~-~~~~v~~iSAktg~gI~eL~~~l~~~~~ 231 (1527)
... ...+. ... ....+.++|+++++|++.|.+++.....
T Consensus 410 ~~~----~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 410 KIP----VVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred CCc----eeccccccCcccceEEEeeechhhhHHHHHHHHHHHHH
Confidence 000 00011 111 2234556999999999999999976543
|
|
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.5e-14 Score=152.27 Aligned_cols=154 Identities=14% Similarity=0.169 Sum_probs=104.7
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|++++|||||+++|.... +.. ....-|.++ ..+.+.+..++||||||+..|...
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~--~~~-------------~~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~~~ 69 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQ--SVT-------------TIPTVGFNV----ETVTYKNVKFNVWDVGGQDKIRPL 69 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCC--Ccc-------------ccCCcccce----EEEEECCEEEEEEECCCCHHHHHH
Confidence 3689999999999999999996431 110 011123322 234457789999999999999888
Q ss_pred HHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
...+++.+|++|+|+|+++.. +......|..... .+.|+++|.||+|+..... .+++.+.+. +. ......
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~-~~-~~~~~~ 144 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMK---PHEIQEKLG-LT-RIRDRN 144 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCC---HHHHHHHcC-CC-ccCCCc
Confidence 888899999999999998742 2233333333322 3689999999999865321 233333221 11 111223
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
++++++||++|. |++++|++|.+
T Consensus 145 ~~~~~~SAk~g~----------gv~~~~~~l~~ 167 (168)
T cd04149 145 WYVQPSCATSGD----------GLYEGLTWLSS 167 (168)
T ss_pred EEEEEeeCCCCC----------ChHHHHHHHhc
Confidence 578999999998 99999998864
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.3e-14 Score=148.16 Aligned_cols=158 Identities=27% Similarity=0.247 Sum_probs=109.2
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH-
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG- 1000 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~- 1000 (1527)
..+|+++|++|+|||||+++|++..-.. .....+.|.......+...+..+.+|||||+.+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 67 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISI---------------VSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK 67 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEe---------------ccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHH
Confidence 3579999999999999999998652111 011122333333344455668899999999876432
Q ss_pred -------HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 1001 -------EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 1001 -------ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
.....+..+|++++|+|++++.......++..+...+.|.++|+||+|+... .+ ...+....+...
T Consensus 68 ~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~-~~-~~~~~~~~~~~~----- 140 (168)
T cd04163 68 LGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD-KE-DLLPLLEKLKEL----- 140 (168)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc-HH-HHHHHHHHHHhc-----
Confidence 3445689999999999999875556666667777778999999999998642 12 222222222111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
....|++.+|++++. |++.|++.|.+++
T Consensus 141 ~~~~~~~~~s~~~~~----------~~~~l~~~l~~~~ 168 (168)
T cd04163 141 GPFAEIFPISALKGE----------NVDELLEEIVKYL 168 (168)
T ss_pred cCCCceEEEEeccCC----------ChHHHHHHHHhhC
Confidence 113578999999998 9999999987653
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=6e-14 Score=149.51 Aligned_cols=153 Identities=19% Similarity=0.168 Sum_probs=108.3
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~~e 1001 (1527)
+|+++|++++|||||+++|+...-.. +..++++.+.....+.+++ .++++|||||+..|...
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~ 65 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN----------------QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSL 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc----------------cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence 79999999999999999998652211 2234455555555566655 56899999999999998
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHH-HHc--CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQT-RFVTRKA-LKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~-~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
+...++.+|++++|+|++++...+. ..++... ... +.|+++++||+|+...+ ....++...... ...+
T Consensus 66 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~-~~~~~~~~~~~~-------~~~~ 137 (161)
T cd01861 66 IPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKR-QVSTEEGEKKAK-------ELNA 137 (161)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccC-ccCHHHHHHHHH-------HhCC
Confidence 9999999999999999987543333 2333332 233 38999999999995332 112222222211 1236
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
+++.+||++|. |++++++.+.+.
T Consensus 138 ~~~~~Sa~~~~----------~v~~l~~~i~~~ 160 (161)
T cd01861 138 MFIETSAKAGH----------NVKELFRKIASA 160 (161)
T ss_pred EEEEEeCCCCC----------CHHHHHHHHHHh
Confidence 78999999998 999999998764
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.8e-14 Score=149.87 Aligned_cols=155 Identities=19% Similarity=0.194 Sum_probs=107.3
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~~e 1001 (1527)
+|+++|++|+|||||+++|+...-. ....+.++.......+.+++ ..+++|||||+..|...
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 65 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFS----------------EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSI 65 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence 7999999999999999999854211 01112223333334445554 67899999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTRFVT-RKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
....++.+|++++|+|+++....+....| ..... .++|+++|+||+|+...+. ...+....... +..+
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~ 137 (164)
T smart00175 66 TSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQ-VSREEAEAFAE-------EHGL 137 (164)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccC-CCHHHHHHHHH-------HcCC
Confidence 89999999999999999875443333223 33333 3689999999999865321 01122222111 2346
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+++++||++|. |++++++.|.+.++
T Consensus 138 ~~~e~Sa~~~~----------~i~~l~~~i~~~~~ 162 (164)
T smart00175 138 PFFETSAKTNT----------NVEEAFEELAREIL 162 (164)
T ss_pred eEEEEeCCCCC----------CHHHHHHHHHHHHh
Confidence 79999999998 99999999988764
|
Rab GTPases are implicated in vesicle trafficking. |
| >KOG0459|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-14 Score=163.68 Aligned_cols=247 Identities=25% Similarity=0.333 Sum_probs=180.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc-------------------------------cccccCCceeEEEEEEEEEeCC
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN-------------------------------VVFSEAGGITQHIGAYNVVTNH 115 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~-------------------------------~~~~~~~giT~~~~~~~~~~~~ 115 (1527)
....+++++||+++||||+-..+.... .......|-|...+...++...
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 456799999999999999875542110 0112224778888889999999
Q ss_pred eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCC-------cHHHHHHHHHHHHcCCC-EEEEEEcccCCcchh--
Q psy1758 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-------MPQTREAIAHAKISGVP-LIVAINKIDKLDINL-- 185 (1527)
Q Consensus 116 ~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-------~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~-- 185 (1527)
.+++++|+|||..|...+..++++||+.+||+++..+. --||+++...++..++. .|+++||||-+..+.
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~ 236 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 236 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence 99999999999999999999999999999999997643 24899999999999886 899999999875432
Q ss_pred HH---HHHHHhhhcc-cccccCCCCcEEEeeccCCCChhHHHHHHHH----------HHHHHhhcCCCCCCCceEEEEEe
Q psy1758 186 DR---IKQDLISEQV-IPEEYGGASPFISISAKTGVGINKLLENISL----------QAEILELKAPVTTPAKGVIIESR 251 (1527)
Q Consensus 186 ~~---~~~~l~~~~~-~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~----------~~~~~~~~~~~~~p~~~~v~~~~ 251 (1527)
++ ....+..... .-........++++|..+|.++.+..+..+- +..+.......+.|+...|.+-+
T Consensus 237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~pI~~Ky 316 (501)
T KOG0459|consen 237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDELPHLERILNGPIRCPVANKY 316 (501)
T ss_pred hhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcccccCCcccCCccceehhccCcccccCCCCEEeehhhhc
Confidence 22 2222211111 0001123467999999999999998863331 11222334556778887777766
Q ss_pred ecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEe--cCCCCCC-CCC
Q psy1758 252 LDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEI--QGLTKVP-FSG 316 (1527)
Q Consensus 252 ~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~~-~~G 316 (1527)
.+ .|+|+.+.+.+|+++.|+.+++-+ +...|.+|+.. ..++..+.||.-+.+ .|+..-. .+|
T Consensus 317 kd--mGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~d-dvE~~~~~pGenvk~rlkgieeedi~~G 383 (501)
T KOG0459|consen 317 KD--MGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSD-DVETDRVAPGENVKLRLKGIEEEDISPG 383 (501)
T ss_pred cc--cceEEEEEecccceecCCeEEEccCCcceEEEEEecc-cceeeeccCCcceEEEecccchhhccCc
Confidence 55 579999999999999999998754 45688889887 678999999987755 4554433 455
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.8e-14 Score=155.87 Aligned_cols=162 Identities=24% Similarity=0.272 Sum_probs=107.8
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC---
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD--- 997 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d--- 997 (1527)
...+|+++|++|+|||||+++|.+... ..+..+|+|.... .+.++ .+++|||||+.+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~----------------~~~~~~~~t~~~~--~~~~~--~~~l~Dt~G~~~~~~ 67 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV----------------RVGKRPGVTRKPN--HYDWG--DFILTDLPGFGFMSG 67 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----------------ccCCCCceeeCce--EEeec--ceEEEeCCccccccc
Confidence 346899999999999999999975411 1223457777644 33444 689999999633
Q ss_pred --------chHHHHH----HHHhcCEEEEEEeCCCC-----------CChhHHHHHHHHHHcCCccEEEEeccCCCCCCh
Q psy1758 998 --------FGGEVER----ILSMVDNVLLLIDAVEG-----------PMPQTRFVTRKALKLGFKPIVVVNKIDRSNARP 1054 (1527)
Q Consensus 998 --------f~~ev~~----~l~~aD~ailVVDa~~G-----------~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~ 1054 (1527)
|...+.. .+..+|++++|+|+... ..+++..++..+...++|+++|+||+|+.+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~- 146 (201)
T PRK04213 68 VPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR- 146 (201)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH-
Confidence 2222222 34567899999999642 23355677777777899999999999996544
Q ss_pred hhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCC
Q psy1758 1055 EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 1115 (1527)
Q Consensus 1055 ~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 1115 (1527)
++..+++.+.+. +.........|++++||++| |+++++++|.+.++.-.
T Consensus 147 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~SA~~g-----------gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 147 DEVLDEIAERLG-LYPPWRQWQDIIAPISAKKG-----------GIEELKEAIRKRLHEAK 195 (201)
T ss_pred HHHHHHHHHHhc-CCccccccCCcEEEEecccC-----------CHHHHHHHHHHhhcCcc
Confidence 233444443332 10011111247899999998 67899999998876543
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=7e-14 Score=154.37 Aligned_cols=164 Identities=20% Similarity=0.176 Sum_probs=112.6
Q ss_pred ccccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCC
Q psy1758 915 SDENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPG 994 (1527)
Q Consensus 915 sq~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPG 994 (1527)
++.+.+..++|+++|++|+|||||+++|+..... .......|.|....... + +..+.||||||
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG 79 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNL--------------ARTSKTPGRTQLINFFE--V-NDKLRLVDLPG 79 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCc--------------ccccCCCCceeEEEEEe--c-CCeEEEeCCCC
Confidence 3455567789999999999999999999864211 01122345555443322 2 47899999999
Q ss_pred CCC----------chHHHHHHHHhc---CEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHH
Q psy1758 995 HAD----------FGGEVERILSMV---DNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDA 1060 (1527)
Q Consensus 995 h~d----------f~~ev~~~l~~a---D~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~ 1060 (1527)
+.. |...+..++..+ +++++|+|+..+.......++..+...++|.++++||+|+.... .+...++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~ 159 (196)
T PRK00454 80 YGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKK 159 (196)
T ss_pred CCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHH
Confidence 632 333344445444 67889999988777666666777777899999999999986532 2223333
Q ss_pred HHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1061 TFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1061 ~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+...+... ..+++++||++|. |++++++.|.+.+.
T Consensus 160 i~~~l~~~-------~~~~~~~Sa~~~~----------gi~~l~~~i~~~~~ 194 (196)
T PRK00454 160 VRKALKFG-------DDEVILFSSLKKQ----------GIDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHhc-------CCceEEEEcCCCC----------CHHHHHHHHHHHhc
Confidence 33333211 3578999999998 99999999987764
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.2e-14 Score=172.28 Aligned_cols=257 Identities=18% Similarity=0.169 Sum_probs=158.5
Q ss_pred EEEEEEEEEEeCCe-----EEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccc----------cccccChhH
Q psy1758 806 KIYKITIIDYTIPY-----LTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLT----------LDKCLNIDT 870 (1527)
Q Consensus 806 ~i~~~~~~~~~~~~-----~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~----------~~~a~~l~~ 870 (1527)
.|.+.-++.|..|. =.+|++|-.|.++-.-+-+.-.++| .|.-.=|.|| |.+|=.+.+
T Consensus 50 ~iD~~l~~~f~~P~S~TGEDvvEi~~HGg~~v~~~il~~l~~~g-------~R~A~pGEFT~RAflNGk~DL~qaEav~d 122 (442)
T TIGR00450 50 CKDDELLFKFVAPNSYTGEDVIEIQCHGSMLIVQEILQLCLKSG-------ARLAQPGEFTQRAFLNGKMDLTQAEAINE 122 (442)
T ss_pred EeeeEEEEEEcCCCCcccccEEEEECCCCHHHHHHHHHHHHHcC-------CeEcCCchhhHHHHhcCCccHHHHHHHHH
Confidence 35566667787773 4799999999987666666555554 2344445554 444333334
Q ss_pred HHhhhh-----------------------hhhccccCcccccccccceeeeccc-ccceeccCc----ccc--cccccce
Q psy1758 871 IIKYSE-----------------------YERISSLIPIDILLSSFGIIYLSDL-LSKRFLHGQ----NLF--LSDENIY 920 (1527)
Q Consensus 871 l~~~~~-----------------------~~~~~~L~pie~~L~~lP~i~l~d~-~~~~i~nG~----~i~--lsq~~~~ 920 (1527)
|..+.- ...+..+--++..+ +||.-+.... ....+..-. .+. .......
T Consensus 123 lI~a~t~~~~~~A~~~l~G~ls~~~~~~r~~l~~~~a~iea~i-Df~ee~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~ 201 (442)
T TIGR00450 123 LILAPNNKVKDIALNKLAGELDQKIEAIRKSLLQLLAQVEVNI-DYEEDDDEQDSLNQLLLSIIAELKDILNSYKLEKLD 201 (442)
T ss_pred HHhCCCHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHeeEEC-CcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 422110 00111122334444 6666331111 000110000 000 0011223
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
...+|+|+|++|+|||||+++|++.... .+....|+|.+.....+.++++.+++|||||+.++..
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~a---------------ivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~ 266 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRA---------------IVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHAD 266 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCc---------------ccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchh
Confidence 4578999999999999999999865221 1223478898888888999999999999999987665
Q ss_pred HH--------HHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 1001 EV--------ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 1001 ev--------~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
.+ ..+++.+|++++|+|++.+...+.. ++..+...+.|+++|+||+|+...+. +++.
T Consensus 267 ~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~~~----~~~~---------- 331 (442)
T TIGR00450 267 FVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKINSL----EFFV---------- 331 (442)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCcch----hhhh----------
Confidence 43 2457889999999999987655544 55556556899999999999865311 1111
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.....|++.+||+++ |+..+++.+.+.+
T Consensus 332 ~~~~~~~~~vSak~~-----------gI~~~~~~L~~~i 359 (442)
T TIGR00450 332 SSKVLNSSNLSAKQL-----------KIKALVDLLTQKI 359 (442)
T ss_pred hhcCCceEEEEEecC-----------CHHHHHHHHHHHH
Confidence 112347889999984 6777777766654
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.1e-14 Score=152.74 Aligned_cols=154 Identities=21% Similarity=0.162 Sum_probs=106.4
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
.++|+++|++|+|||||+++|+... +.. .. .|+......+.+++..+.++||||+..|...
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~--~~~-------------~~----~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 75 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGE--VVH-------------TS----PTIGSNVEEIVYKNIRFLMWDIGGQESLRSS 75 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCC--CCC-------------cC----CccccceEEEEECCeEEEEEECCCCHHHHHH
Confidence 4689999999999999999997531 110 01 1222333456777899999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHH-H---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMP-QTRFVTRKAL-K---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~-~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
...++..+|++++|+|++++... .....+.... . .++|+++++||+|+.+... .+++...+.... .....
T Consensus 76 ~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~---~~~i~~~l~~~~--~~~~~ 150 (174)
T cd04153 76 WNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT---PAEISESLGLTS--IRDHT 150 (174)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCC---HHHHHHHhCccc--ccCCc
Confidence 99999999999999999875321 1222232222 2 3589999999999876421 122222221101 11235
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
++++++||++|. |+++++++|.+
T Consensus 151 ~~~~~~SA~~g~----------gi~e~~~~l~~ 173 (174)
T cd04153 151 WHIQGCCALTGE----------GLPEGLDWIAS 173 (174)
T ss_pred eEEEecccCCCC----------CHHHHHHHHhc
Confidence 689999999998 99999998854
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >KOG0097|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.7e-14 Score=137.84 Aligned_cols=149 Identities=18% Similarity=0.181 Sum_probs=111.4
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+-.|+|+.|+|||+|+..++...|-..-+.++...++...++..+. ++++|||+|+|+|+.....+++.+.+++.|+
T Consensus 12 fkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvy 91 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 91 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEE
Confidence 46789999999999999999999987777777888888877777665 7889999999999999999999999999999
Q ss_pred eCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcch---hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 148 AADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDIN---LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 148 da~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~---~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|.+..... .|..-.+.+...+..+++++||.|+.... .++.+. +.++. ...|+++||++|.|++
T Consensus 92 ditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~-------faeen--gl~fle~saktg~nve 162 (215)
T KOG0097|consen 92 DITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKE-------FAEEN--GLMFLEASAKTGQNVE 162 (215)
T ss_pred EehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHH-------HHhhc--CeEEEEecccccCcHH
Confidence 99974332 22222222233344589999999996532 111111 11121 2468999999999999
Q ss_pred HHHHHHH
Q psy1758 221 KLLENIS 227 (1527)
Q Consensus 221 eL~~~l~ 227 (1527)
+.|-.-.
T Consensus 163 dafle~a 169 (215)
T KOG0097|consen 163 DAFLETA 169 (215)
T ss_pred HHHHHHH
Confidence 9775544
|
|
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.9e-14 Score=151.51 Aligned_cols=156 Identities=18% Similarity=0.220 Sum_probs=102.3
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|++|+|||||+++++...-.....+.. + +.......+....+.+++|||||+.+|.....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~--------------~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTI--------------E-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCch--------------h-hhEEEEEEECCEEEEEEEEECCCcccchHHHH
Confidence 79999999999999999998652211100000 0 00111122222346789999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCCChhH-HHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQT-RFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
..++.+|++++|+|+++....+. ...+.... ..+.|+++|.||+|+...+.. ..++...... ....|
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~ 138 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVV-STEEGKELAR-------QWGCP 138 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceE-cHHHHHHHHH-------HcCCE
Confidence 99999999999999987422211 12222222 236899999999998654311 1112221111 12357
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
++++||++|. |++++++.+++.+.
T Consensus 139 ~~~~Sa~~~~----------~i~~l~~~l~~~~~ 162 (164)
T smart00173 139 FLETSAKERV----------NVDEAFYDLVREIR 162 (164)
T ss_pred EEEeecCCCC----------CHHHHHHHHHHHHh
Confidence 9999999998 99999999988764
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.6e-14 Score=155.37 Aligned_cols=153 Identities=20% Similarity=0.161 Sum_probs=103.0
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCe-EEEEEeCCCCCCc
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT-RINIIDTPGHADF 998 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~-~iniiDTPGh~df 998 (1527)
+...+|+|+|++|+|||||+++|+...... +...+.|+......+.+.+. .+.+|||||+.+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 102 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYA----------------EDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRD 102 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhcc----------------CCccceeccceeEEEEecCCceEEEeCCCccccC
Confidence 345799999999999999999998652110 11124455555556666654 8999999998542
Q ss_pred -hHHH-------HHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHh
Q psy1758 999 -GGEV-------ERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFD 1066 (1527)
Q Consensus 999 -~~ev-------~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~ 1066 (1527)
..++ ...+..+|++++|+|++++...+.. .+...... .++|+++|+||+|+....... ..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~------~~~- 175 (204)
T cd01878 103 LPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE------ERL- 175 (204)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH------HHh-
Confidence 1111 1235689999999999987544332 22333333 368999999999996543211 111
Q ss_pred hhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1067 KLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1067 ~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.....|++++||++|. |++++++.|...+
T Consensus 176 ------~~~~~~~~~~Sa~~~~----------gi~~l~~~L~~~~ 204 (204)
T cd01878 176 ------EAGRPDAVFISAKTGE----------GLDELLEAIEELL 204 (204)
T ss_pred ------hcCCCceEEEEcCCCC----------CHHHHHHHHHhhC
Confidence 1124579999999998 9999999987653
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=7e-14 Score=150.35 Aligned_cols=157 Identities=22% Similarity=0.217 Sum_probs=107.2
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df 998 (1527)
..++|+++|++|+|||||+++|+.. .+.. .....++.+.....+.+.+ ..+.+|||||+.+|
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~--~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 69 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQG--LFPP--------------GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF 69 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhC--CCCC--------------CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH
Confidence 4589999999999999999999743 1110 0011222233344455665 45788999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHH---HHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKA---LKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~---~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
.......++.+|++++|+|+.++...+....| ..+ ...++|.++|+||+|+...+ ++..++...+...
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~--~i~~~~~~~~~~~------ 141 (169)
T cd04114 70 RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERR--EVSQQRAEEFSDA------ 141 (169)
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc--ccCHHHHHHHHHH------
Confidence 99999999999999999999875433222223 222 22468899999999986432 2222222223221
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...+++.+||++|. |++++++.|.+.+
T Consensus 142 ~~~~~~~~Sa~~~~----------gv~~l~~~i~~~~ 168 (169)
T cd04114 142 QDMYYLETSAKESD----------NVEKLFLDLACRL 168 (169)
T ss_pred cCCeEEEeeCCCCC----------CHHHHHHHHHHHh
Confidence 12468999999998 9999999987653
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-14 Score=150.75 Aligned_cols=149 Identities=30% Similarity=0.334 Sum_probs=105.5
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCchH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 1000 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~~ 1000 (1527)
.+|+++|++|+|||||+++|+... .+.+..+++|.......+.+++ +.+.+|||||+.+|..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 65 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK----------------FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA 65 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC----------------CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH
Confidence 589999999999999999998652 1123335677766666677777 7899999999999987
Q ss_pred HHHHHHHhcCEEEEEEeCCCC-------CChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEG-------PMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G-------~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
........++.++.++|.... ...+...++..+.. +.|.++++||+|+...+ ...+....+..+.
T Consensus 66 ~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~---- 137 (161)
T TIGR00231 66 IRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK---LKTHVAFLFAKLN---- 137 (161)
T ss_pred HHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch---hhHHHHHHHhhcc----
Confidence 777667777777777666543 22333334444433 88999999999997654 2233333332222
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHH
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAI 1107 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i 1107 (1527)
..|++++||++|. |+..+++.|
T Consensus 138 --~~~~~~~sa~~~~----------gv~~~~~~l 159 (161)
T TIGR00231 138 --GEPIIPLSAETGK----------NIDSAFKIV 159 (161)
T ss_pred --CCceEEeecCCCC----------CHHHHHHHh
Confidence 2368999999998 999998876
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.1e-14 Score=151.34 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=106.6
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|..++|||||+++|.... +... ..|+......+.+++..+++|||||+.+|...+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~~~~-----------------~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~ 61 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--FMQP-----------------IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWK 61 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--CCCc-----------------CCcCceeEEEEEECCEEEEEEECCCChhcchHHH
Confidence 48899999999999999997541 1110 1122222234677889999999999999999888
Q ss_pred HHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1004 RILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
..++.+|++++|+|+++.. .......+....+ .+.|+++|.||+|+.+... .+++...+ .+........++
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~-~~~~~~~~~~~~ 137 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALS---VEEMTELL-SLHKLCCGRSWY 137 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCC---HHHHHHHh-CCccccCCCcEE
Confidence 9999999999999998732 1222333333332 2478999999999965422 22233222 111100111346
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
++++||++|. |++++|++|.+.++.
T Consensus 138 ~~~~Sa~~g~----------gv~~~f~~l~~~~~~ 162 (169)
T cd04158 138 IQGCDARSGM----------GLYEGLDWLSRQLVA 162 (169)
T ss_pred EEeCcCCCCC----------CHHHHHHHHHHHHhh
Confidence 7889999998 999999999887653
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.9e-14 Score=151.83 Aligned_cols=160 Identities=21% Similarity=0.290 Sum_probs=107.1
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|.+++|||||+++|... +.. ......|.+ ...+.++++.++++||||+..|...+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~~------------~~~~t~g~~----~~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IPK------------KVAPTVGFT----PTKLRLDKYEVCIFDLGGGANFRGIWV 61 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CCc------------cccCcccce----EEEEEECCEEEEEEECCCcHHHHHHHH
Confidence 4899999999999999999743 110 001112332 345677889999999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHH----cCCccEEEEeccCCCCCC-hhhhHHHHHHHHhhhcccccccCC
Q psy1758 1004 RILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK----LGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~----~glp~IvviNKiD~~~a~-~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
.+++.+|++|+|+|+++.- .......+..+.. .++|+++|+||+|+++++ ..++.+.+. +..+. ......+
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~--l~~~~-~~~~~~~ 138 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLS--LEKLV-NENKSLC 138 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcC--ccccc-CCCCceE
Confidence 9999999999999998742 2223334444332 478999999999998765 232332211 11111 1112346
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
+++++||++|.+.. ...|+.+-|++|..
T Consensus 139 ~~~~~Sa~~g~~~~----~~~g~~~~~~wl~~ 166 (167)
T cd04161 139 HIEPCSAIEGLGKK----IDPSIVEGLRWLLA 166 (167)
T ss_pred EEEEeEceeCCCCc----cccCHHHHHHHHhc
Confidence 78999999994211 11278888888753
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-14 Score=153.74 Aligned_cols=158 Identities=17% Similarity=0.169 Sum_probs=108.2
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
+..+|+++|.+|+|||||+++|.... +... .. |..+....+.+++.+++++||||+..+..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~--~~~~-------------~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 76 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDR--LAQH-------------QP----TQHPTSEELAIGNIKFTTFDLGGHQQARR 76 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCC--Cccc-------------CC----ccccceEEEEECCEEEEEEECCCCHHHHH
Confidence 34689999999999999999997541 1100 11 22222345667789999999999999988
Q ss_pred HHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc----
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT---- 1071 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~---- 1071 (1527)
.+..++..+|++++|+|+++.. ..+....+..+. ..+.|+++|+||+|++.+.. .+++.+.+.-....
T Consensus 77 ~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~---~~~i~~~l~l~~~~~~~~ 153 (184)
T smart00178 77 LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAAS---EDELRYALGLTNTTGSKG 153 (184)
T ss_pred HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCC---HHHHHHHcCCCccccccc
Confidence 8889999999999999998742 222333333332 25789999999999975422 22333333211100
Q ss_pred -ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1072 -EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1072 -~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
.....+-++++||++|. |+++++++|.+.
T Consensus 154 ~~~~~~~~i~~~Sa~~~~----------g~~~~~~wl~~~ 183 (184)
T smart00178 154 KVGVRPLEVFMCSVVRRM----------GYGEGFKWLSQY 183 (184)
T ss_pred ccCCceeEEEEeecccCC----------ChHHHHHHHHhh
Confidence 01123458999999998 999999999764
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=164.27 Aligned_cols=160 Identities=19% Similarity=0.196 Sum_probs=113.8
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe-cCeEEEEEeCCCCCC-
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHAD- 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~iniiDTPGh~d- 997 (1527)
.-+..|+|+|.+|+|||||+++|+.....+. ...++|+.+....+.+ ++..+.++||||..+
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~~va----------------~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~g 219 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKPKIA----------------DYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEG 219 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCCccC----------------CCCCceeCceEEEEEeCCCcEEEEEeCCCccCC
Confidence 3456899999999999999999986522222 2246788888888888 567899999999753
Q ss_pred ------chHHHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHH-----cCCccEEEEeccCCCCCChhhhHHHHHHHH
Q psy1758 998 ------FGGEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLF 1065 (1527)
Q Consensus 998 ------f~~ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~-----~glp~IvviNKiD~~~a~~~~v~~~~~~~~ 1065 (1527)
+.....+.+..+|++|+|+|+++.. ..+...+...+.. .+.|.++|+||+|+.++. ....+....+
T Consensus 220 a~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~--~~~~~~~~~~ 297 (335)
T PRK12299 220 ASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE--EEREKRAALE 297 (335)
T ss_pred CCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch--hHHHHHHHHH
Confidence 4556677788899999999998642 2233333344433 368999999999987543 1121111111
Q ss_pred hhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1066 DKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1066 ~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
. ....++++++||+++. |+++|+++|.+.++.
T Consensus 298 ~------~~~~~~i~~iSAktg~----------GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 298 L------AALGGPVFLISAVTGE----------GLDELLRALWELLEE 329 (335)
T ss_pred H------HhcCCCEEEEEcCCCC----------CHHHHHHHHHHHHHh
Confidence 1 1123579999999998 999999999887754
|
|
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.8e-14 Score=149.86 Aligned_cols=155 Identities=20% Similarity=0.224 Sum_probs=102.3
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~~e 1001 (1527)
+|+++|++|+|||||+++|+...-.... ....|.+... ..+.+.+ ..+++|||||+.+|...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~--------------~~t~~~~~~~--~~~~~~~~~~~~~~~D~~g~~~~~~~ 65 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQY--------------KATIGADFLT--KEVTVDDKLVTLQIWDTAGQERFQSL 65 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc--------------CCccceEEEE--EEEEECCEEEEEEEEeCCChHHHHhH
Confidence 7999999999999999999865211000 0111222222 2233443 56789999999999988
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHHHH--HHH------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTRFVTRK--ALK------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~~~~~~--~~~------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
....++.+|++|+|+|+.++...+....|.. ... .++|+++|+||+|+...+. ...+++.......+
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~---- 140 (172)
T cd01862 66 GVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ-VSTKKAQQWCQSNG---- 140 (172)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccc-cCHHHHHHHHHHcC----
Confidence 8889999999999999987532222222211 111 2689999999999974221 11223332222211
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.++++++||++|. |++.+++.+.+.+
T Consensus 141 --~~~~~~~Sa~~~~----------gv~~l~~~i~~~~ 166 (172)
T cd01862 141 --NIPYFETSAKEAI----------NVEQAFETIARKA 166 (172)
T ss_pred --CceEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 2579999999998 9999999988754
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.4e-14 Score=148.15 Aligned_cols=153 Identities=18% Similarity=0.226 Sum_probs=102.2
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec----CeEEEEEeCCCCCCch
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN----GTRINIIDTPGHADFG 999 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~----~~~iniiDTPGh~df~ 999 (1527)
+|+++|.+++|||||+++|+..... . +..+.+..+.....+.++ ...++||||||+.+|.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~--~--------------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 65 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT--K--------------DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFD 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--C--------------CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHH
Confidence 6999999999999999999854211 0 001112222222223332 4689999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHH-HHH--cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRK-ALK--LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~-~~~--~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
......++.+|++++|+|+++....+....|.. ..+ .++|+++|+||+|+...+.. ..++...... ...
T Consensus 66 ~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v-~~~~~~~~~~-------~~~ 137 (162)
T cd04106 66 AITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVI-TNEEAEALAK-------RLQ 137 (162)
T ss_pred HhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCC-CHHHHHHHHH-------HcC
Confidence 999999999999999999987433233223322 222 37999999999998643211 1122222111 124
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
+|++++||++|. |++++++.|...
T Consensus 138 ~~~~~~Sa~~~~----------~v~~l~~~l~~~ 161 (162)
T cd04106 138 LPLFRTSVKDDF----------NVTELFEYLAEK 161 (162)
T ss_pred CeEEEEECCCCC----------CHHHHHHHHHHh
Confidence 589999999998 999999988653
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.5e-14 Score=155.84 Aligned_cols=158 Identities=18% Similarity=0.186 Sum_probs=103.9
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~~e 1001 (1527)
+|+++|+.|+|||||+++++...-.-. . ..++.......+.+++ ..++||||||+.+|...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~-~----------------~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 63 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPK-Y----------------RRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAM 63 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc-C----------------CCchhhheeEEEEECCEEEEEEEEECCCchhhhHH
Confidence 489999999999999999986421100 0 0011111122344445 67899999999999988
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
...++..+|++|+|+|++++-..+ ....+..+. ..++|+++|+||+|+.........++....+. ....
T Consensus 64 ~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~------~~~~ 137 (198)
T cd04147 64 RKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE------LDWN 137 (198)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH------hhcC
Confidence 888899999999999998742222 222222222 24799999999999865311111111111110 1123
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.+++.+||++|. |++++++++.+.++.+
T Consensus 138 ~~~~~~Sa~~g~----------gv~~l~~~l~~~~~~~ 165 (198)
T cd04147 138 CGFVETSAKDNE----------NVLEVFKELLRQANLP 165 (198)
T ss_pred CcEEEecCCCCC----------CHHHHHHHHHHHhhcc
Confidence 578999999998 9999999999887543
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >KOG0466|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-14 Score=158.88 Aligned_cols=234 Identities=26% Similarity=0.355 Sum_probs=168.1
Q ss_pred CCEEEEEecCCCChhHHHHHHHccc---cccccCCceeEEEEEEEEEe---C--------------------------C-
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTN---VVFSEAGGITQHIGAYNVVT---N--------------------------H- 115 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~---~~~~~~~giT~~~~~~~~~~---~--------------------------~- 115 (1527)
.++|.-+||+.|||||++.++++-. |...-...+|+..++.+... + +
T Consensus 38 TiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~ 117 (466)
T KOG0466|consen 38 TINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGC 117 (466)
T ss_pred eeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCC
Confidence 3578889999999999999997754 33334456777776644221 0 0
Q ss_pred -------eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC-CcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhH
Q psy1758 116 -------GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG-VMPQTREAIAHAKISGVP-LIVAINKIDKLDINLD 186 (1527)
Q Consensus 116 -------~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g-~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~ 186 (1527)
+.+.|+|+|||+-....+..++...|+++|.+++.+. .++||-|++....-.... ++++-||+|+...+..
T Consensus 118 ~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~~A 197 (466)
T KOG0466|consen 118 EGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKESQA 197 (466)
T ss_pred CCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhHHHH
Confidence 1377999999999999999999999999999999984 589999999887777665 8899999999875433
Q ss_pred HHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeec--------CCCce
Q psy1758 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLD--------KGKGP 258 (1527)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~--------~~~G~ 258 (1527)
....+... .+.........|++++||.-+.||+-+.+.|+.. ++.+..+...|++.+|+.++.. .-+|.
T Consensus 198 ~eq~e~I~-kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkk--IPvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGg 274 (466)
T KOG0466|consen 198 LEQHEQIQ-KFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKK--IPVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGG 274 (466)
T ss_pred HHHHHHHH-HHHhccccCCCceeeehhhhccChHHHHHHHHhc--CCCCccccCCCCcEEEEEeeccCCCCchhhcccCc
Confidence 22211111 1111122245699999999999999999999744 3334445567888999988753 45789
Q ss_pred EEEEEeeccEEEeccEEEecc---------------eeeeEeEeeccCCceeeecCCCcceEe
Q psy1758 259 VATVLIQSGTLRCSDIVVAGA---------------SYGRIRSMLNENGKNILEAGPSIPVEI 306 (1527)
Q Consensus 259 v~~~~v~~G~l~~gd~vv~g~---------------~~~kVr~i~~~~g~~v~~a~~~~~v~I 306 (1527)
|+.+.+..|.|++||++.+-+ .+.+|-+++-.+ .+++.|-||--..+
T Consensus 275 vaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE~-n~L~~AvPGGLIGV 336 (466)
T KOG0466|consen 275 VAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAEQ-NDLQFAVPGGLIGV 336 (466)
T ss_pred cccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHhhh-ccceeecCCceeee
Confidence 999999999999999987621 123455554433 35677777654433
|
|
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=149.05 Aligned_cols=158 Identities=18% Similarity=0.145 Sum_probs=107.3
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|++|+|||||+++++........ ....|.+.......+......++||||||+..|...
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 69 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------------DLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSI 69 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--------------CCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence 358999999999999999999854211110 012244443333333333467999999999999988
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTRFVT-RKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
....++.+|++|+|+|+++...-+....| ..... .+.|+++|.||+|+...+. ...++....... ..+
T Consensus 70 ~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~~ 141 (168)
T cd01866 70 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRRE-VSYEEGEAFAKE-------HGL 141 (168)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccC-CCHHHHHHHHHH-------cCC
Confidence 88899999999999999864333333223 23333 3688999999999864321 112223222211 235
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+++++||++|. |++++++.+.+.+
T Consensus 142 ~~~e~Sa~~~~----------~i~~~~~~~~~~~ 165 (168)
T cd01866 142 IFMETSAKTAS----------NVEEAFINTAKEI 165 (168)
T ss_pred EEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 78999999998 9999999887765
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=147.09 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=101.7
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCchH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df~~ 1000 (1527)
.+|+++|.+|+|||||+++|+...-.....+. .+.+. ...+..+ .+.+++|||||+.+|..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t--------------~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~~~~ 64 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPT--------------IEDSY---RKQVVIDGETCLLDILDTAGQEEYSA 64 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCc--------------chheE---EEEEEECCEEEEEEEEECCCCcchHH
Confidence 37999999999999999999854211000000 01111 1122333 35688999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.+..+++.+|++++|+|.++....+. ...+.... ..++|+++|.||+|+.... ...++...... ..
T Consensus 65 l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~-------~~ 135 (162)
T cd04138 65 MRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAART--VSSRQGQDLAK-------SY 135 (162)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccce--ecHHHHHHHHH-------Hh
Confidence 99999999999999999986322222 22222332 2478999999999986532 11222222221 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+|++++||++|. |++++++++.+.+
T Consensus 136 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 161 (162)
T cd04138 136 GIPYIETSAKTRQ----------GVEEAFYTLVREI 161 (162)
T ss_pred CCeEEEecCCCCC----------CHHHHHHHHHHHh
Confidence 4579999999998 9999999997653
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-13 Score=164.26 Aligned_cols=157 Identities=22% Similarity=0.269 Sum_probs=110.5
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC-eEEEEEeCCCCCC-
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGHAD- 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-~~iniiDTPGh~d- 997 (1527)
.-+-.|+|+|.+|+|||||+++|+.....+. ...++|..+....+.+.+ .++.|+||||+.+
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~~~va----------------~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~ 218 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAKPKIA----------------DYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEG 218 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCCcccc----------------CCCCCccCCEEEEEEeCCceEEEEEeCCCcccC
Confidence 4466899999999999999999986532222 223567777777788877 8999999999753
Q ss_pred ------chHHHHHHHHhcCEEEEEEeCCCC----CChhHHHHHHHHHH-----cCCccEEEEeccCCCCCChhhhHHHHH
Q psy1758 998 ------FGGEVERILSMVDNVLLLIDAVEG----PMPQTRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATF 1062 (1527)
Q Consensus 998 ------f~~ev~~~l~~aD~ailVVDa~~G----~~~qt~~~~~~~~~-----~glp~IvviNKiD~~~a~~~~v~~~~~ 1062 (1527)
+.....+.+..+|++|+|+|+++. +..+...+.+.+.. .+.|.++|+||+|+..+. ..+++.
T Consensus 219 a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~---~~~~~~ 295 (329)
T TIGR02729 219 ASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE---ELAELL 295 (329)
T ss_pred CcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH---HHHHHH
Confidence 344566677889999999999863 22222233333332 368999999999996542 122222
Q ss_pred HHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1063 DLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1063 ~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+.+.+ ...++++++||+++. |+++|++.|.+.+
T Consensus 296 ~~l~~------~~~~~vi~iSAktg~----------GI~eL~~~I~~~l 328 (329)
T TIGR02729 296 KELKK------ALGKPVFPISALTGE----------GLDELLYALAELL 328 (329)
T ss_pred HHHHH------HcCCcEEEEEccCCc----------CHHHHHHHHHHHh
Confidence 22211 123579999999998 9999999998765
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=146.78 Aligned_cols=152 Identities=16% Similarity=0.203 Sum_probs=103.1
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|+.++|||||+.+|... .+... ...-|..+ ..+.+....+++|||||+..|...+.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~--~~~~~-------------~pt~g~~~----~~~~~~~~~~~l~D~~G~~~~~~~~~ 62 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLG--EIVTT-------------IPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWR 62 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCccc-------------CCCCCcce----EEEEECCEEEEEEECCCCHhHHHHHH
Confidence 6999999999999999999643 11110 11112222 23556788999999999999998888
Q ss_pred HHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1004 RILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
.+++.+|++|+|+|+++.. +.+....|..+.. .+.|++++.||+|+.+... .+++...+. +. ......++
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~-~~-~~~~~~~~ 137 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS---AAEVTDKLG-LH-SLRNRNWY 137 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC---HHHHHHHhC-cc-ccCCCCEE
Confidence 8999999999999998632 2233333433322 2588999999999965422 223333221 11 01122456
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
++.+||++|. |+++++++|.+
T Consensus 138 ~~~~Sak~g~----------gv~~~~~~l~~ 158 (159)
T cd04150 138 IQATCATSGD----------GLYEGLDWLSN 158 (159)
T ss_pred EEEeeCCCCC----------CHHHHHHHHhc
Confidence 7899999998 99999998864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=152.41 Aligned_cols=157 Identities=22% Similarity=0.310 Sum_probs=105.2
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEE--eCCeEEEEEeCCChhhHHHHHHhhcccc-CEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVV--TNHGSITFLDTPGHEAFTAMRARGAKVT-DIVVLV 146 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~--~~~~~i~~iDTPG~e~f~~~~~~~~~~a-D~~IlV 146 (1527)
++|+++|++|+|||||+++|....+.... +.++.+....... ..+..+.+||||||++|..+...+++.+ +++|+|
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~-~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~V 79 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV-TSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFV 79 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc-CcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEE
Confidence 57999999999999999999988764443 2333444333332 2356899999999999999999999998 999999
Q ss_pred EeCCCCC--cHHHHHHHH----HHH--HcCCCEEEEEEcccCCcchhHH-HHHHHhhh----------c-----------
Q psy1758 147 VAADDGV--MPQTREAIA----HAK--ISGVPLIVAINKIDKLDINLDR-IKQDLISE----------Q----------- 196 (1527)
Q Consensus 147 vda~~g~--~~qt~e~i~----~~~--~~~vpiIvviNKiDl~~~~~~~-~~~~l~~~----------~----------- 196 (1527)
+|+.+.. .....+.+. ... ..++|+++|+||+|+..+.... +...+..+ .
T Consensus 80 vD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~ 159 (203)
T cd04105 80 VDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSK 159 (203)
T ss_pred EECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 9999852 122222222 111 2479999999999987643222 22111100 0
Q ss_pred ----------ccccccCCCCcEEEeeccCCC-ChhHHHHHHH
Q psy1758 197 ----------VIPEEYGGASPFISISAKTGV-GINKLLENIS 227 (1527)
Q Consensus 197 ----------~~~~~~~~~~~v~~iSAktg~-gI~eL~~~l~ 227 (1527)
+........+.++++|++.+. |++.+.++|.
T Consensus 160 ~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~ 201 (203)
T cd04105 160 ESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWID 201 (203)
T ss_pred cccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHh
Confidence 000111235678999998876 6888888874
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=146.04 Aligned_cols=153 Identities=20% Similarity=0.226 Sum_probs=104.9
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|++++|||||+++|+....... ..+..|.+..............+++|||||+..|.....
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 67 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN--------------YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITP 67 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc--------------cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHH
Confidence 699999999999999999985522111 011223333333333333457899999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQT-RFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
..++.+|++++|+|+.+....+. ..++...... ++|.++++||+|..... ....+++.+.... ..+|+
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~-------~~~~~ 139 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQR-QVSTEEAQQFAKE-------NGLLF 139 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccc-cccHHHHHHHHHH-------cCCeE
Confidence 99999999999999987332222 3334444443 48999999999995221 1122333332221 34689
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHH
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAIL 1108 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~ 1108 (1527)
+.+||++|. |++.+++.|.
T Consensus 140 ~~~sa~~~~----------~i~~~~~~i~ 158 (159)
T cd00154 140 FETSAKTGE----------NVEELFQSLA 158 (159)
T ss_pred EEEecCCCC----------CHHHHHHHHh
Confidence 999999998 9999998875
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.8e-14 Score=148.98 Aligned_cols=158 Identities=21% Similarity=0.178 Sum_probs=104.9
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|.+|+|||||+++|+...-... .....|++..............+.||||||+.+|....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSA--------------FVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 4799999999999999999985421100 00112222222222222234679999999999999988
Q ss_pred HHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
...++.+|++++|+|+++...- +....+..+.. .+.|+++|+||+|+...+... .++..+... .+.+|
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~-------~~~~~ 139 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVS-SERGRQLAD-------QLGFE 139 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccC-HHHHHHHHH-------HcCCE
Confidence 8999999999999999864222 22233333333 257889999999996543211 122222111 12457
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
++.+||++|. |+.+|++.+.+.++
T Consensus 140 ~~~~Sa~~~~----------gv~~l~~~l~~~~~ 163 (165)
T cd01865 140 FFEASAKENI----------NVKQVFERLVDIIC 163 (165)
T ss_pred EEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 9999999998 99999999988764
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-13 Score=166.81 Aligned_cols=160 Identities=19% Similarity=0.256 Sum_probs=114.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC-eEEEEEeCCCCCC--
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGHAD-- 997 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-~~iniiDTPGh~d-- 997 (1527)
-+-.|+|+|.+|+|||||+++|+..... +...+++|+.+....+.+.+ ..+.|+||||..+
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k~~----------------vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a 221 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAKPK----------------VADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGA 221 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCccc----------------ccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccc
Confidence 3457999999999999999999865221 23346788888888888875 4699999999754
Q ss_pred -----chHHHHHHHHhcCEEEEEEeCCC----CCChhHHHHHHHHHHc-----CCccEEEEeccCCCCCChhhhHHHHHH
Q psy1758 998 -----FGGEVERILSMVDNVLLLIDAVE----GPMPQTRFVTRKALKL-----GFKPIVVVNKIDRSNARPEWVVDATFD 1063 (1527)
Q Consensus 998 -----f~~ev~~~l~~aD~ailVVDa~~----G~~~qt~~~~~~~~~~-----glp~IvviNKiD~~~a~~~~v~~~~~~ 1063 (1527)
+...+.+.+..+|++++|||++. .+..+...+++.+..+ +.|.++|+||+|+... ++..+.+..
T Consensus 222 ~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~~ 299 (390)
T PRK12298 222 SEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAKA 299 (390)
T ss_pred cchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHHH
Confidence 44566778899999999999872 2333444444544443 6899999999998643 222222222
Q ss_pred HHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1064 LFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1064 ~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
....+. ...+++++||+++. |+++|++.|.+.+|.
T Consensus 300 l~~~~~-----~~~~Vi~ISA~tg~----------GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 300 IVEALG-----WEGPVYLISAASGL----------GVKELCWDLMTFIEE 334 (390)
T ss_pred HHHHhC-----CCCCEEEEECCCCc----------CHHHHHHHHHHHhhh
Confidence 211111 12368999999998 999999999998864
|
|
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-13 Score=148.24 Aligned_cols=156 Identities=20% Similarity=0.231 Sum_probs=105.0
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCch
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~ 999 (1527)
..+|+++|.+|+|||||+++++...-.. +....++.+.....+..++ .++++|||||+.+|.
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 65 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTE----------------SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 65 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHH
Confidence 3689999999999999999998541110 0111222222333344443 578999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
......++.+|++|+|+|+++...- +....+..... .++|.++|.||+|+...+.- ..++...... ..
T Consensus 66 ~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~-~~~~~~~~~~-------~~ 137 (166)
T cd01869 66 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVV-DYSEAQEFAD-------EL 137 (166)
T ss_pred HHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCC-CHHHHHHHHH-------Hc
Confidence 9888899999999999999873211 22223333333 36899999999998654321 1122222111 22
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+|++++||++|. |++++++.+.+.+
T Consensus 138 ~~~~~~~Sa~~~~----------~v~~~~~~i~~~~ 163 (166)
T cd01869 138 GIPFLETSAKNAT----------NVEQAFMTMAREI 163 (166)
T ss_pred CCeEEEEECCCCc----------CHHHHHHHHHHHH
Confidence 4689999999998 9999999998754
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-13 Score=145.91 Aligned_cols=166 Identities=23% Similarity=0.289 Sum_probs=121.7
Q ss_pred cccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCC
Q psy1758 916 DENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH 995 (1527)
Q Consensus 916 q~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh 995 (1527)
+.|.+....||++|.+|+|||||+|+|+++.... .....+|.|..... |++++ .+.|||.||+
T Consensus 18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LA--------------rtSktPGrTq~iNf--f~~~~-~~~lVDlPGY 80 (200)
T COG0218 18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLA--------------RTSKTPGRTQLINF--FEVDD-ELRLVDLPGY 80 (200)
T ss_pred hCCCCCCcEEEEEccCcccHHHHHHHHhCCccee--------------ecCCCCCccceeEE--EEecC-cEEEEeCCCc
Confidence 5566677899999999999999999999863321 12345788876654 44444 3899999995
Q ss_pred C----------CchHHHHHHH---HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHHH
Q psy1758 996 A----------DFGGEVERIL---SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDAT 1061 (1527)
Q Consensus 996 ~----------df~~ev~~~l---~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~~ 1061 (1527)
- .+...+..++ ....+++++||+.+++....+++++.+...++|++|++||+|+.... ....+..+
T Consensus 81 GyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v 160 (200)
T COG0218 81 GYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKV 160 (200)
T ss_pred ccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHH
Confidence 2 2445556666 34679999999999999999999999999999999999999997643 33444555
Q ss_pred HHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1062 FDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1062 ~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.+.+. .......+ ++..|+.++. |+++|...|.+++-
T Consensus 161 ~~~l~---~~~~~~~~-~~~~ss~~k~----------Gi~~l~~~i~~~~~ 197 (200)
T COG0218 161 AEELK---KPPPDDQW-VVLFSSLKKK----------GIDELKAKILEWLK 197 (200)
T ss_pred HHHhc---CCCCccce-EEEEeccccc----------CHHHHHHHHHHHhh
Confidence 54332 11111011 7888999988 89999999887663
|
|
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=148.10 Aligned_cols=156 Identities=23% Similarity=0.258 Sum_probs=105.3
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCch
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~ 999 (1527)
..+|+++|.+|+|||||+++++... +... .....|.+. ....+.+++ +.+++|||||+.+|.
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~--f~~~------------~~~t~~~~~--~~~~~~~~~~~~~l~l~D~~g~~~~~ 66 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS--FNPS------------FISTIGIDF--KIRTIELDGKKIKLQIWDTAGQERFR 66 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCc--CCcc------------cccCccceE--EEEEEEECCEEEEEEEEeCCchHHHH
Confidence 4789999999999999999998542 1100 011112222 222334444 578999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
......++.+|++|+|+|++++..-+. ...+..... .+.|.++|.||+|+.+.+. ...++...... ..
T Consensus 67 ~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~-------~~ 138 (167)
T cd01867 67 TITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRV-VSKEEGEALAD-------EY 138 (167)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccC-CCHHHHHHHHH-------Hc
Confidence 888888999999999999987433222 222222332 3689999999999975321 11222222221 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+|++.+||++|. |++++|+.+.+.+
T Consensus 139 ~~~~~~~Sa~~~~----------~v~~~~~~i~~~~ 164 (167)
T cd01867 139 GIKFLETSAKANI----------NVEEAFFTLAKDI 164 (167)
T ss_pred CCEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 4579999999998 9999999988754
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=145.86 Aligned_cols=152 Identities=18% Similarity=0.207 Sum_probs=103.8
Q ss_pred EEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHHH
Q psy1758 925 SAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVER 1004 (1527)
Q Consensus 925 IaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~~ 1004 (1527)
|+|+|++|+|||||+++|....-... . . + |+......+.+++..+.+|||||+..|...+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~-----------~---~--~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSED-----------T---I--P--TVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcC-----------c---c--C--CCCcceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 79999999999999999975421100 0 0 1 111222335566788999999999999999999
Q ss_pred HHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1005 ILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1005 ~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
++..+|++++|+|+++.. ..+....+..+.. .++|+++|+||+|..+... .+++...+. +.. .....+++
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~---~~~~~~~~~-~~~-~~~~~~~~ 138 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS---VDELIEQMN-LKS-ITDREVSC 138 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC---HHHHHHHhC-ccc-ccCCceEE
Confidence 999999999999998632 2233333443332 4789999999999875432 122222211 111 11224678
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
+++||++|. |++.++++|.+
T Consensus 139 ~~~Sa~~~~----------gi~~l~~~l~~ 158 (159)
T cd04159 139 YSISCKEKT----------NIDIVLDWLIK 158 (159)
T ss_pred EEEEeccCC----------ChHHHHHHHhh
Confidence 999999998 99999998864
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=169.23 Aligned_cols=153 Identities=24% Similarity=0.295 Sum_probs=118.2
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhH------HHHHHhhc--ccc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAF------TAMRARGA--KVT 140 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f------~~~~~~~~--~~a 140 (1527)
..+|+++|+||+|||||+|+|++.+..++..||.|.+.....+.+.++.+.++|+||...+ .....+++ ..+
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~ 82 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKP 82 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCC
Confidence 3569999999999999999999999999999999999999999999999999999993222 11222333 467
Q ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 141 D~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|++|.|+||++ .+......-++.+.+.|+|+++|++|.....--++..+..+ +.. .+|++++||++|.|++
T Consensus 83 D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~-----~~L--GvPVv~tvA~~g~G~~ 153 (653)
T COG0370 83 DLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLS-----KLL--GVPVVPTVAKRGEGLE 153 (653)
T ss_pred CEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHH-----HHh--CCCEEEEEeecCCCHH
Confidence 99999999997 44455555667789999999999999754211111111111 112 3799999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
++++.+....
T Consensus 154 ~l~~~i~~~~ 163 (653)
T COG0370 154 ELKRAIIELA 163 (653)
T ss_pred HHHHHHHHhc
Confidence 9999997554
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=142.60 Aligned_cols=149 Identities=22% Similarity=0.273 Sum_probs=105.2
Q ss_pred EEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC--CeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCC
Q psy1758 74 IMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN--HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADD 151 (1527)
Q Consensus 74 IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~--~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~ 151 (1527)
++|++|+|||||++++.+..........+..+......... +..+.+|||||+..+.......++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 58999999999999999877622222222244444444432 4579999999999998888888899999999999998
Q ss_pred CCcHHHHHHH-----HHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHH
Q psy1758 152 GVMPQTREAI-----AHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226 (1527)
Q Consensus 152 g~~~qt~e~i-----~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l 226 (1527)
+........+ ......++|+++++||+|+............. . . ......+++++||+++.|+++++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~-~--~--~~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAE-Q--L--AKELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHH-H--H--HhhcCCcEEEEecCCCCChHHHHHHH
Confidence 6544444332 23345689999999999997643322211000 0 0 01224689999999999999999987
Q ss_pred H
Q psy1758 227 S 227 (1527)
Q Consensus 227 ~ 227 (1527)
.
T Consensus 156 ~ 156 (157)
T cd00882 156 A 156 (157)
T ss_pred h
Confidence 4
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-13 Score=153.28 Aligned_cols=146 Identities=22% Similarity=0.221 Sum_probs=106.0
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhh-------HHHHHHhhccccCEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA-------FTAMRARGAKVTDIV 143 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~-------f~~~~~~~~~~aD~~ 143 (1527)
+|+++|.+|+|||||+++|++........+++|.+.....+.+++..+++|||||+.. +.......++.+|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 6899999999999999999998766677788888888888888999999999999743 223345678999999
Q ss_pred EEEEeCCCCCc-H--------------------------------------------HH-HHHHHHH-------------
Q psy1758 144 VLVVAADDGVM-P--------------------------------------------QT-REAIAHA------------- 164 (1527)
Q Consensus 144 IlVvda~~g~~-~--------------------------------------------qt-~e~i~~~------------- 164 (1527)
++|+|+++... . .+ ...++..
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999876321 0 00 0001000
Q ss_pred ---------H--HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 165 ---------K--ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 165 ---------~--~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
. ...+|+++|+||+|+.+.+... .+ ....+++++||++|.|+++|++.+...
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~---~~----------~~~~~~~~~SA~~g~gi~~l~~~i~~~ 224 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELD---LL----------ARQPNSVVISAEKGLNLDELKERIWDK 224 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCHHHHH---HH----------hcCCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 0 1125899999999996532111 11 112368999999999999999999754
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=141.87 Aligned_cols=134 Identities=29% Similarity=0.388 Sum_probs=98.7
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCC----hhhHHHHHHhhccccCEEEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG----HEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG----~e~f~~~~~~~~~~aD~~IlV 146 (1527)
+|.++|++++|||||+++|.+...... -|+.+... + .++|||| +..|.......+..||++++|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~----KTq~i~~~-----~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll 70 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYK----KTQAIEYY-----D---NTIDTPGEYIENPRFYHALIVTAQDADVVLLL 70 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcC----ccceeEec-----c---cEEECChhheeCHHHHHHHHHHHhhCCEEEEE
Confidence 699999999999999999998765332 24444322 1 3599999 556666666677899999999
Q ss_pred EeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCC--cchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 147 VAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL--DINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 147 vda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~--~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
.|+++... ..--..+...+.|+|-|+||+|+. +++.++..+.+...+. -.+|++|+.+|+||++|.+
T Consensus 71 ~dat~~~~---~~pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~--------~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 71 QDATEPRS---VFPPGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGV--------KEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred ecCCCCCc---cCCchhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCC--------CCeEEEECCCCcCHHHHHH
Confidence 99998421 111123455678999999999998 5555555555544432 3579999999999999999
Q ss_pred HHH
Q psy1758 225 NIS 227 (1527)
Q Consensus 225 ~l~ 227 (1527)
.|.
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 873
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=9e-14 Score=148.26 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=104.8
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|++|+|||||+++|+...... ..++..|.+.......+......+.+|||||+..|.....
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 67 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDP--------------DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTS 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc--------------ccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhH
Confidence 79999999999999999998542211 0122334433333333333346799999999999988888
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHHHHH-HHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTRFVT-RKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
..++.+|++++|+|+++....+....| ..+. ..+.|.++|+||+|+...... .++...... ...+|
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~--~~~~~~~~~-------~~~~~ 138 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVT--REEGLKFAR-------KHNML 138 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccC--HHHHHHHHH-------HcCCE
Confidence 889999999999999874333322222 2222 246889999999999733211 122222111 13568
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
++++||++|. |++++++.+.+.
T Consensus 139 ~~~~Sa~~~~----------gi~~~~~~~~~~ 160 (161)
T cd01863 139 FIETSAKTRD----------GVQQAFEELVEK 160 (161)
T ss_pred EEEEecCCCC----------CHHHHHHHHHHh
Confidence 9999999998 999999998765
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.8e-13 Score=142.76 Aligned_cols=151 Identities=24% Similarity=0.344 Sum_probs=104.8
Q ss_pred EEEEecCCCChhHHHHHHHcccc--ccccCCceeEEEEEEEEEeCCeEEEEEeCCChh----------hHHHHHHhhc--
Q psy1758 72 VTIMGHVDHGKTSLLDYIRKTNV--VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE----------AFTAMRARGA-- 137 (1527)
Q Consensus 72 V~IvG~~~~GKTSLl~~L~~~~~--~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e----------~f~~~~~~~~-- 137 (1527)
|+++|++|+|||||++.+.+... ..+...+.|........ + ..+.+|||||+. .|......++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV--N-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc--c-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 89999999999999999995443 34444455655544332 2 289999999942 3444444444
Q ss_pred -cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHH-HHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 138 -KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR-IKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 138 -~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
...+++++++|.++.......+.+..+...+.|+++++||+|+....... ....+.. .. ..+....+++++||++
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~-~l--~~~~~~~~~~~~Sa~~ 155 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKK-EL--KLFEIDPPIILFSSLK 155 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHH-HH--HhccCCCceEEEecCC
Confidence 34678999999998776766777777777889999999999996432211 1111111 11 1023346899999999
Q ss_pred CCChhHHHHHHHH
Q psy1758 216 GVGINKLLENISL 228 (1527)
Q Consensus 216 g~gI~eL~~~l~~ 228 (1527)
+.|+.++++.|..
T Consensus 156 ~~~~~~l~~~l~~ 168 (170)
T cd01876 156 GQGIDELRALIEK 168 (170)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999864
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-13 Score=143.33 Aligned_cols=154 Identities=26% Similarity=0.271 Sum_probs=109.8
Q ss_pred EEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec-CeEEEEEeCCCCCCchH-----
Q psy1758 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-GTRINIIDTPGHADFGG----- 1000 (1527)
Q Consensus 927 IiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-~~~iniiDTPGh~df~~----- 1000 (1527)
|+|++|+|||||+++|+..... .....++.|.......+.+. +..+.+|||||+.++..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~ 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVA---------------IVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER 65 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccc---------------ccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH
Confidence 5899999999999999754211 12233556666555555555 67999999999888653
Q ss_pred --HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1001 --EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1001 --ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
.+...++.+|++++|+|+..+.......++......+.|.++|+||+|+...+.......... .. .......|
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~---~~--~~~~~~~~ 140 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRL---LI--LLLLLGLP 140 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHH---hh--cccccCCc
Confidence 445578999999999999998777666656677778999999999999875432211110000 00 11122468
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
++++||+++. |+.++++++.+.
T Consensus 141 ~~~~sa~~~~----------~v~~l~~~l~~~ 162 (163)
T cd00880 141 VIAVSALTGE----------GIDELREALIEA 162 (163)
T ss_pred eEEEeeeccC----------CHHHHHHHHHhh
Confidence 9999999998 999999998764
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.4e-14 Score=133.07 Aligned_cols=86 Identities=51% Similarity=0.843 Sum_probs=77.6
Q ss_pred ceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecc
Q psy1758 1122 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC 1201 (1527)
Q Consensus 1122 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~ 1201 (1527)
|+|+||++++|++.|+++++||++|+|++||+|.+... +++....+|.+|+.++|+++.+++++.||||+++.|++++.
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~-~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~~~ 79 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKR-DGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDIT 79 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcC-CCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCCCCc
Confidence 68999999999999999999999999999999998765 22223478999999999999999999999999999999999
Q ss_pred cCCeeeC
Q psy1758 1202 IGSTICD 1208 (1527)
Q Consensus 1202 iGdTi~~ 1208 (1527)
+||||++
T Consensus 80 ~Gdtl~~ 86 (86)
T cd03691 80 IGDTICD 86 (86)
T ss_pred ccceecC
Confidence 9999963
|
BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion. |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=147.13 Aligned_cols=153 Identities=16% Similarity=0.205 Sum_probs=101.6
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe-cCeEEEEEeCCCCCCchHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~iniiDTPGh~df~~ev 1002 (1527)
+|+++|.+|+|||||++++....-. .. ....|.++ ..+.+ .++.+++|||||+..|...+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~--~~-------------~~t~~~~~----~~~~~~~~~~l~i~D~~G~~~~~~~~ 61 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV--TT-------------IPTVGFNV----EMLQLEKHLSLTVWDVGGQEKMRTVW 61 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc--cc-------------cCccCcce----EEEEeCCceEEEEEECCCCHhHHHHH
Confidence 3899999999999999999864211 00 11122222 12222 35789999999999999888
Q ss_pred HHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPM-PQTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
...+..+|++|+|+|++++.. ......+.... ..+.|+++|+||+|++.... .+++...+. +........+
T Consensus 62 ~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~i~~~~~-~~~~~~~~~~ 137 (160)
T cd04156 62 KCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT---AEEITRRFK-LKKYCSDRDW 137 (160)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC---HHHHHHHcC-CcccCCCCcE
Confidence 888999999999999987531 22222222222 15789999999999965422 122222221 1111111345
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
+++++||++|. |++++++.|.+
T Consensus 138 ~~~~~Sa~~~~----------gv~~~~~~i~~ 159 (160)
T cd04156 138 YVQPCSAVTGE----------GLAEAFRKLAS 159 (160)
T ss_pred EEEecccccCC----------ChHHHHHHHhc
Confidence 78999999998 99999998864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.9e-14 Score=132.35 Aligned_cols=83 Identities=23% Similarity=0.422 Sum_probs=76.8
Q ss_pred ceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecc
Q psy1758 1122 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC 1201 (1527)
Q Consensus 1122 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~ 1201 (1527)
|.++||++++|+|.|+++++||++|+|++||.|.+... ....+|.+|+.+.|.++.++++|.||||++++|++++.
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~----~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~~~ 76 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTK----GKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDTA 76 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCC----CcEEEeeEEEEEcCCCceECCEeCCCCEEEEECCCCCc
Confidence 57899999999999999999999999999999998764 24578999999999999999999999999999999999
Q ss_pred cCCeeeC
Q psy1758 1202 IGSTICD 1208 (1527)
Q Consensus 1202 iGdTi~~ 1208 (1527)
+||||++
T Consensus 77 ~Gdtl~~ 83 (83)
T cd04088 77 TGDTLCD 83 (83)
T ss_pred cCCEeeC
Confidence 9999974
|
During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-13 Score=167.08 Aligned_cols=158 Identities=19% Similarity=0.213 Sum_probs=112.5
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC--
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD-- 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d-- 997 (1527)
.-+..|+|+|.+|+|||||+++|+.....+ ...+++|+.+....+.+++.++.|+||||..+
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkI----------------adypfTTl~P~lGvv~~~~~~f~laDtPGliega 220 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKI----------------ADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGA 220 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCccc----------------cccCcccccceEEEEEECCeEEEEEECCCCcccc
Confidence 345689999999999999999998652222 22367888888999999999999999999753
Q ss_pred -----chHHHHHHHHhcCEEEEEEeCCCC-----CChhHHHHHHHH--------------HHcCCccEEEEeccCCCCCC
Q psy1758 998 -----FGGEVERILSMVDNVLLLIDAVEG-----PMPQTRFVTRKA--------------LKLGFKPIVVVNKIDRSNAR 1053 (1527)
Q Consensus 998 -----f~~ev~~~l~~aD~ailVVDa~~G-----~~~qt~~~~~~~--------------~~~glp~IvviNKiD~~~a~ 1053 (1527)
...+..+.+..||++|+|||++.. +..+...+...+ ...+.|.|||+||+|++++.
T Consensus 221 s~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~ 300 (500)
T PRK12296 221 SEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR 300 (500)
T ss_pred chhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH
Confidence 234556677889999999999741 222222211122 12468999999999997542
Q ss_pred hhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1054 PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1054 ~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+..+.+...+.. ..+|++++||+++. |+++|+++|.+.+.
T Consensus 301 --el~e~l~~~l~~-------~g~~Vf~ISA~tge----------GLdEL~~~L~ell~ 340 (500)
T PRK12296 301 --ELAEFVRPELEA-------RGWPVFEVSAASRE----------GLRELSFALAELVE 340 (500)
T ss_pred --HHHHHHHHHHHH-------cCCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 233333332221 24689999999998 99999998887663
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-13 Score=148.44 Aligned_cols=156 Identities=13% Similarity=0.146 Sum_probs=107.1
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|.+++|||||+.+|... .+.. ..+..|.. ...+.+++..+.||||||+..|...
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~--~~~~-------------~~~t~~~~----~~~~~~~~~~l~l~D~~G~~~~~~~ 73 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLG--ESVT-------------TIPTIGFN----VETVTYKNISFTVWDVGGQDKIRPL 73 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcC--CCCC-------------cCCccccc----eEEEEECCEEEEEEECCCChhhHHH
Confidence 368999999999999999999632 1110 01112222 2234567889999999999999998
Q ss_pred HHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
+...++.+|++|+|+|+++.. .......+..+.. .++|+++|.||+|+.++... +++.+.+. +.. .....
T Consensus 74 ~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~-~~~-~~~~~ 148 (175)
T smart00177 74 WRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKA---AEITEKLG-LHS-IRDRN 148 (175)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCH---HHHHHHhC-ccc-cCCCc
Confidence 889999999999999998632 2333444444432 35799999999999765322 23333221 111 11123
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+.++++||++|. |+++++++|.+.+
T Consensus 149 ~~~~~~Sa~~g~----------gv~e~~~~l~~~~ 173 (175)
T smart00177 149 WYIQPTCATSGD----------GLYEGLTWLSNNL 173 (175)
T ss_pred EEEEEeeCCCCC----------CHHHHHHHHHHHh
Confidence 457789999998 9999999997764
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.8e-14 Score=150.32 Aligned_cols=150 Identities=22% Similarity=0.268 Sum_probs=102.1
Q ss_pred EEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec-CeEEEEEeCCCCCC-------c
Q psy1758 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-GTRINIIDTPGHAD-------F 998 (1527)
Q Consensus 927 IiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-~~~iniiDTPGh~d-------f 998 (1527)
|+|++|+|||||+++|+.... ......+.|+.+....+.++ +..+++|||||+.+ +
T Consensus 1 iiG~~~~GKStll~~l~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 64 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP----------------KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGL 64 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc----------------cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCc
Confidence 589999999999999986521 11223566777777777888 89999999999743 2
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCC-----Ch--hHHHHHHHHH----------HcCCccEEEEeccCCCCCChhhhHHHH
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGP-----MP--QTRFVTRKAL----------KLGFKPIVVVNKIDRSNARPEWVVDAT 1061 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~-----~~--qt~~~~~~~~----------~~glp~IvviNKiD~~~a~~~~v~~~~ 1061 (1527)
...+.+.+..+|++++|+|+.+.. .+ +...+...+. ..++|.++|+||+|+...+. .....
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~~ 142 (176)
T cd01881 65 GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE--LEEEL 142 (176)
T ss_pred cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH--HHHHH
Confidence 334566788899999999998763 22 2222222222 14789999999999975432 11110
Q ss_pred HHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1062 FDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1062 ~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
.... ......+++++||++|. |++++++.+...
T Consensus 143 ~~~~------~~~~~~~~~~~Sa~~~~----------gl~~l~~~l~~~ 175 (176)
T cd01881 143 VREL------ALEEGAEVVPISAKTEE----------GLDELIRAIYEL 175 (176)
T ss_pred HHHH------hcCCCCCEEEEehhhhc----------CHHHHHHHHHhh
Confidence 0000 11123579999999998 999999988654
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >KOG0075|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=136.97 Aligned_cols=157 Identities=22% Similarity=0.249 Sum_probs=115.0
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAA 149 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda 149 (1527)
..++++|-.++|||||+|.+..+.+...- +.|+.+....++-++..+.+||.||+..|..|+.++++.++++++|+|+
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~edm--iptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDa 98 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDA 98 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhhh--cccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeec
Confidence 45899999999999999987766554333 3355566677777777899999999999999999999999999999999
Q ss_pred CCCC-cHHHHHHHH----HHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 150 DDGV-MPQTREAIA----HAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 150 ~~g~-~~qt~e~i~----~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
.+.- .+..++.+. .....++|++|.+||.|++++-......+ ..+. ..-....+-+|.+||++..||+.+.+
T Consensus 99 ad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~--rmgL-~sitdREvcC~siScke~~Nid~~~~ 175 (186)
T KOG0075|consen 99 ADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIE--RMGL-SSITDREVCCFSISCKEKVNIDITLD 175 (186)
T ss_pred CCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHH--HhCc-cccccceEEEEEEEEcCCccHHHHHH
Confidence 9822 222333333 33446899999999999987532222111 1111 11112346799999999999999999
Q ss_pred HHHHHHH
Q psy1758 225 NISLQAE 231 (1527)
Q Consensus 225 ~l~~~~~ 231 (1527)
+|..+..
T Consensus 176 Wli~hsk 182 (186)
T KOG0075|consen 176 WLIEHSK 182 (186)
T ss_pred HHHHHhh
Confidence 9987643
|
|
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-13 Score=147.48 Aligned_cols=155 Identities=18% Similarity=0.264 Sum_probs=103.9
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|.+|+|||||+++++... +.. ......|..+.........+...+.+|||||+.+|.....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~--~~~------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGE--FEK------------KYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRD 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC------------CCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccH
Confidence 79999999999999999998441 110 0011122332222222233456899999999999988777
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEE
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTRFVT-RKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVI 1080 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi 1080 (1527)
..+..+|++|+|+|++++..-+....| ..+... ++|+++|.||+|+...... .+... +.. ...++++
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~---~~~~~-~~~------~~~~~~~ 137 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVK---AKQIT-FHR------KKNLQYY 137 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCC---HHHHH-HHH------HcCCEEE
Confidence 888999999999999875433332223 333322 6999999999998743221 11111 111 1235799
Q ss_pred EeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1081 YTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1081 ~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.+||++|. |++.+++.+.+.+.
T Consensus 138 e~Sa~~~~----------~v~~~f~~l~~~~~ 159 (166)
T cd00877 138 EISAKSNY----------NFEKPFLWLARKLL 159 (166)
T ss_pred EEeCCCCC----------ChHHHHHHHHHHHH
Confidence 99999998 99999999987763
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=165.35 Aligned_cols=150 Identities=20% Similarity=0.196 Sum_probs=104.0
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe-cCeEEEEEeCCCC-CCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGH-ADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~iniiDTPGh-~df 998 (1527)
...+|+|+|++|+|||||+|+|++.. . ..+...|.|+++....+.+ ++..+.||||||. .+.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~---------------~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l 251 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-V---------------YAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL 251 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-e---------------eeccCCccccCCEEEEEEeCCCceEEEEecCcccccC
Confidence 44689999999999999999998642 1 1122346777777777888 5789999999997 332
Q ss_pred hHH-------HHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhh
Q psy1758 999 GGE-------VERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDK 1067 (1527)
Q Consensus 999 ~~e-------v~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~ 1067 (1527)
..+ +...+..||++|+|+|++++...+.. .+...+.. .+.|+++|+||+|+... ..+ ... .
T Consensus 252 ~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~--~~v-~~~---~-- 323 (351)
T TIGR03156 252 PHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE--PRI-ERL---E-- 323 (351)
T ss_pred CHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh--HhH-HHH---H--
Confidence 211 22246889999999999986543322 22223333 36899999999998642 111 111 0
Q ss_pred hcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1068 LCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1068 l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
. . ..+++++||++|. |+++|++.|.+.
T Consensus 324 -~-~----~~~~i~iSAktg~----------GI~eL~~~I~~~ 350 (351)
T TIGR03156 324 -E-G----YPEAVFVSAKTGE----------GLDLLLEAIAER 350 (351)
T ss_pred -h-C----CCCEEEEEccCCC----------CHHHHHHHHHhh
Confidence 0 0 1368999999998 999999998764
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-13 Score=153.21 Aligned_cols=158 Identities=18% Similarity=0.205 Sum_probs=106.4
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+|+|++|+|||||+++|+... +.. .....|.+.......+....+.++||||||+.+|...
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~--~~~-------------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 78 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSS--VED-------------LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTL 78 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC--CCC-------------cCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHH
Confidence 4689999999999999999998542 111 1112233332222222223467899999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH-----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~-----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
...+++.+|++|+|+|+++....+.. ..|..... .++|.++|+||+|+...+.. ..++...... ..
T Consensus 79 ~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i-~~~~~~~~~~-------~~ 150 (211)
T PLN03118 79 TSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDV-SREEGMALAK-------EH 150 (211)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCcc-CHHHHHHHHH-------Hc
Confidence 99999999999999999874322222 23432221 35788999999998654321 1112221111 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.++++++||++|. |++.+++.+.+.+.
T Consensus 151 ~~~~~e~SAk~~~----------~v~~l~~~l~~~~~ 177 (211)
T PLN03118 151 GCLFLECSAKTRE----------NVEQCFEELALKIM 177 (211)
T ss_pred CCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 3578999999998 99999999998764
|
|
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-13 Score=145.56 Aligned_cols=156 Identities=20% Similarity=0.204 Sum_probs=102.1
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|++++|||||+++|+...-.- .. ...-|.+.......+......++||||||+.+|.....
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~~-------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KY-------------LPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRN 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CC-------------CCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHH
Confidence 79999999999999999998652110 00 01112222222222333346889999999999998888
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHH--------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTRFVT-RKALK--------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~--------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
..++.+|++|+|+|+++....+....| ..+.. .+.|+++|+||+|+..... ...++...... .
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~-------~ 139 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA-VSEDEGRLWAE-------S 139 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccc-cCHHHHHHHHH-------H
Confidence 889999999999999874332222222 22222 3578999999999863211 11122221111 1
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..+|++.+||++|. |++++++.+.+.+
T Consensus 140 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~l 166 (168)
T cd04119 140 KGFKYFETSACTGE----------GVNEMFQTLFSSI 166 (168)
T ss_pred cCCeEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 23579999999998 9999999998754
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=146.57 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=102.5
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|.+|+|||||+++++... +..... .+ -+.+ ......+..+...+++|||||+.+|....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~--f~~~~~--~t----------~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT--FRESYI--PT----------IEDT-YRQVISCSKNICTLQITDTTGSHQFPAMQ 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCCCcC--Cc----------chhe-EEEEEEECCEEEEEEEEECCCCCcchHHH
Confidence 479999999999999999998542 111000 00 0001 11122333455789999999999999888
Q ss_pred HHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
..+++.+|++|+|+|.++.... ....++....+ .++|+++|.||+|+...+. +..+....+. ...
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~--v~~~~~~~~~------~~~ 138 (165)
T cd04140 67 RLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE--VSSNEGAACA------TEW 138 (165)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCe--ecHHHHHHHH------HHh
Confidence 8889999999999999875432 23344444433 4689999999999865321 1111111111 112
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
.++++.+||++|. |++++++.|++.
T Consensus 139 ~~~~~e~SA~~g~----------~v~~~f~~l~~~ 163 (165)
T cd04140 139 NCAFMETSAKTNH----------NVQELFQELLNL 163 (165)
T ss_pred CCcEEEeecCCCC----------CHHHHHHHHHhc
Confidence 3578999999998 999999998753
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=149.03 Aligned_cols=156 Identities=16% Similarity=0.182 Sum_probs=107.0
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|..++|||||+.+|... .+.. ..+..|.++ ..+++++..++||||||+..|...
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~--~~~~-------------~~pt~g~~~----~~~~~~~~~~~i~D~~Gq~~~~~~ 77 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLG--EIVT-------------TIPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPL 77 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccC--CCcc-------------ccCCcceeE----EEEEECCEEEEEEECCCCHHHHHH
Confidence 358999999999999999999642 1111 112223332 346678899999999999999998
Q ss_pred HHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
+...++.+|++|+|+|+++... ...+..+..... .++|+++|.||+|++++.. .+++.+.+. +.. .....
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~l~-l~~-~~~~~ 152 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AAEITDKLG-LHS-LRQRH 152 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC---HHHHHHHhC-ccc-cCCCc
Confidence 8889999999999999987421 122222222221 3689999999999976532 233333321 111 11123
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+.++++||++|. |+.+++++|.+.+
T Consensus 153 ~~~~~~Sa~~g~----------gv~e~~~~l~~~~ 177 (181)
T PLN00223 153 WYIQSTCATSGE----------GLYEGLDWLSNNI 177 (181)
T ss_pred eEEEeccCCCCC----------CHHHHHHHHHHHH
Confidence 456789999998 9999999998765
|
|
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=150.90 Aligned_cols=158 Identities=16% Similarity=0.203 Sum_probs=105.1
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|++|+|||||+++++..... ... ...-|.+. .+...++...+.++||||||+.+|...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~-~~~-------------~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI-DEY-------------DPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAM 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-cCc-------------CCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhh
Confidence 358999999999999999999864211 000 00011111 122233334567899999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
+..+++.+|++++|+|+++...- +...++..... .++|+++|.||+|+.+.+.-. .++...... ...
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~-~~~~~~~~~-------~~~ 141 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVS-TGEGQELAK-------SFG 141 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC-HHHHHHHHH-------HhC
Confidence 99999999999999999874321 22222233322 368999999999986543211 111111111 123
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+|++.+||++|. |+.++++++++.+.
T Consensus 142 ~~~~e~Sak~~~----------gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 142 IPFLETSAKQRV----------NVDEAFYELVREIR 167 (189)
T ss_pred CEEEEeeCCCCC----------CHHHHHHHHHHHHH
Confidence 589999999998 99999999987764
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-13 Score=164.77 Aligned_cols=154 Identities=21% Similarity=0.270 Sum_probs=110.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec-CeEEEEEeCCCCCC--
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-GTRINIIDTPGHAD-- 997 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-~~~iniiDTPGh~d-- 997 (1527)
-+..|+++|.+|+|||||+++|+.....+. ..+++|+.+....+.+. +..+.|+||||+..
T Consensus 157 ~~adVglVG~pNaGKSTLLn~Lt~ak~kIa----------------~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega 220 (424)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVVSNAKPKIA----------------NYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGA 220 (424)
T ss_pred ccCcEEEEcCCCCCHHHHHHHHHcCCCccc----------------cCCcceeceEEEEEEEeCCceEEEEECCCCcccc
Confidence 345899999999999999999986532222 23567888888888887 78999999999753
Q ss_pred -----chHHHHHHHHhcCEEEEEEeCCCC----CChhHHHHHHHHHH-----cCCccEEEEeccCCCCCChhhhHHHHHH
Q psy1758 998 -----FGGEVERILSMVDNVLLLIDAVEG----PMPQTRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFD 1063 (1527)
Q Consensus 998 -----f~~ev~~~l~~aD~ailVVDa~~G----~~~qt~~~~~~~~~-----~glp~IvviNKiD~~~a~~~~v~~~~~~ 1063 (1527)
+.....+.+..+|++|+|||++.. +..+...+...+.. .++|.+||+||+|++.. .+.++++.+
T Consensus 221 ~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~ 298 (424)
T PRK12297 221 SEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKE 298 (424)
T ss_pred cccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHH
Confidence 344556667789999999999742 22233333344433 37899999999998542 222233322
Q ss_pred HHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1064 LFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1064 ~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
. +. .|++++||+++. |+++|++.|.+.++
T Consensus 299 ~---l~-------~~i~~iSA~tge----------GI~eL~~~L~~~l~ 327 (424)
T PRK12297 299 K---LG-------PKVFPISALTGQ----------GLDELLYAVAELLE 327 (424)
T ss_pred H---hC-------CcEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 1 11 479999999998 99999999988764
|
|
| >cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3) | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-13 Score=131.26 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=74.9
Q ss_pred eEEEeeec---cccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceec
Q psy1758 1124 LQIISLEY---SSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEI 1200 (1527)
Q Consensus 1124 ~~V~~~~~---d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~ 1200 (1527)
++|||+.+ +++.|+++++|||||+|++||.|++... + ..++|++|+.++|.++.++++|.||||++++|++++
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~--~--~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~ 76 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRL--G--KEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNF 76 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCC--C--CEEEeeEeEEEecCCeeEcCEECCCCEEEEECCCCc
Confidence 47999999 9999999999999999999999988654 2 257899999999999999999999999999999999
Q ss_pred ccCCeeeC
Q psy1758 1201 CIGSTICD 1208 (1527)
Q Consensus 1201 ~iGdTi~~ 1208 (1527)
.+|||||+
T Consensus 77 ~~Gdtl~~ 84 (85)
T cd03689 77 QIGDTLTE 84 (85)
T ss_pred cccCEeeC
Confidence 99999985
|
Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ. |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-13 Score=146.51 Aligned_cols=157 Identities=17% Similarity=0.184 Sum_probs=104.2
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|++++|||||++++.... +... .....|.+.......+....+++.||||||+..|....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~--~~~~------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 68 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK--FMAD------------CPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVT 68 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCC------------CCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 589999999999999999997541 1110 00111222222222232234678999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
...++.+|++|+|+|+++...-+.. .++..... .+.|+++|.||+|+...+.. ..++...... ...++
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~ 140 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDV-TYEEAKQFAD-------ENGLL 140 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCc-CHHHHHHHHH-------HcCCE
Confidence 9999999999999999874332222 23333332 35788999999999754311 1222222221 12458
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
++.+||++|. |+.++++.+...+
T Consensus 141 ~~e~Sa~~~~----------~i~e~f~~l~~~~ 163 (166)
T cd04122 141 FLECSAKTGE----------NVEDAFLETAKKI 163 (166)
T ss_pred EEEEECCCCC----------CHHHHHHHHHHHH
Confidence 9999999998 9999998887643
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-13 Score=150.20 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=103.7
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec---CeEEEEEeCCCCCCchH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---GTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---~~~iniiDTPGh~df~~ 1000 (1527)
+|+++|.+++|||||+++|+... +... .....|. +.....+.+. .+.++||||||+..|..
T Consensus 2 KivivG~~~vGKTsli~~l~~~~--~~~~------------~~~t~~~--d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~ 65 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGI--FSQH------------YKATIGV--DFALKVIEWDPNTVVRLQLWDIAGQERFGG 65 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCC------------CCCceeE--EEEEEEEEECCCCEEEEEEEECCCchhhhh
Confidence 79999999999999999998541 1100 0011122 2222233333 46789999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHH-------HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKAL-------KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~-------~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
.....++.+|++|+|+|.++...-+....| ..+. ..++|+++|.||+|+...+. ...+++.+.....+
T Consensus 66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~--- 141 (201)
T cd04107 66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA-KDGEQMDQFCKENG--- 141 (201)
T ss_pred hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc-cCHHHHHHHHHHcC---
Confidence 888999999999999999874322222222 2221 14679999999999963211 11223333222211
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
-.+++.+||++|. |++++++++.+.+..
T Consensus 142 ---~~~~~e~Sak~~~----------~v~e~f~~l~~~l~~ 169 (201)
T cd04107 142 ---FIGWFETSAKEGI----------NIEEAMRFLVKNILA 169 (201)
T ss_pred ---CceEEEEeCCCCC----------CHHHHHHHHHHHHHH
Confidence 1368999999998 999999999887643
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-13 Score=145.81 Aligned_cols=156 Identities=21% Similarity=0.239 Sum_probs=105.4
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCch
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~ 999 (1527)
..+|+++|.+++|||||+++|+...-... ..+.++.+.....+..++ ..+++|||||+..|.
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 66 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLD----------------SKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYR 66 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC----------------CCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 35899999999999999999985421100 112222222333444444 578999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
......++.+|++|+|+|+++....+. ...+..+.+ .++|+++|.||+|+...+. ...++...... ..
T Consensus 67 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~-~~~~~~~~~~~-------~~ 138 (165)
T cd01868 67 AITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA-VPTEEAKAFAE-------KN 138 (165)
T ss_pred HHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc-CCHHHHHHHHH-------Hc
Confidence 888889999999999999986332222 222333333 2588999999999865431 11222222221 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.++++++||++|. |++.+++.+.+.+
T Consensus 139 ~~~~~~~Sa~~~~----------~v~~l~~~l~~~i 164 (165)
T cd01868 139 GLSFIETSALDGT----------NVEEAFKQLLTEI 164 (165)
T ss_pred CCEEEEEECCCCC----------CHHHHHHHHHHHh
Confidence 4579999999998 9999999998764
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-13 Score=148.52 Aligned_cols=155 Identities=18% Similarity=0.234 Sum_probs=106.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
+..+|+|+|++|+|||||+++|....- . ......|+++ ..+.+.+..+.+|||||+..|..
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~--~-------------~~~~t~g~~~----~~i~~~~~~~~~~D~~G~~~~~~ 73 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDI--S-------------HITPTQGFNI----KTVQSDGFKLNVWDIGGQRAIRP 73 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCC--c-------------ccCCCCCcce----EEEEECCEEEEEEECCCCHHHHH
Confidence 356899999999999999999975411 0 0112234333 34566788999999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHH----HHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKA----LKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~----~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.+...++.+|++++|+|+.+.. ..+....+... ...++|+++++||+|+.+... .+++.+.+. +.. ....
T Consensus 74 ~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~i~~~l~-~~~-~~~~ 148 (173)
T cd04155 74 YWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP---AEEIAEALN-LHD-LRDR 148 (173)
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC---HHHHHHHcC-Ccc-cCCC
Confidence 9999999999999999998632 12223233222 235789999999999865431 222333221 111 1112
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
.++++.+||++|. |+++++++|.+
T Consensus 149 ~~~~~~~Sa~~~~----------gi~~~~~~l~~ 172 (173)
T cd04155 149 TWHIQACSAKTGE----------GLQEGMNWVCK 172 (173)
T ss_pred eEEEEEeECCCCC----------CHHHHHHHHhc
Confidence 3568899999998 99999999864
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-13 Score=145.80 Aligned_cols=155 Identities=19% Similarity=0.217 Sum_probs=102.3
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|.+|+|||||+++|+...-.-...+.. .| .. .....+....+.+.+|||||+.+|.....
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~----~~----------~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 66 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTK----AD----------SY-RKKVVLDGEDVQLNILDTAGQEDYAAIRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCcc----hh----------hE-EEEEEECCEEEEEEEEECCChhhhhHHHH
Confidence 79999999999999999998542111000000 00 00 11122333456899999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1004 RILSMVDNVLLLIDAVEGPM-PQTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
..++.+|++++|+|..+.-. ......+.... ..++|+++|+||+|+...+.. ...+...... +..+|
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~-~~~~~~~~~~-------~~~~~ 138 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQV-SSEEAANLAR-------QWGVP 138 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccccc-CHHHHHHHHH-------HhCCe
Confidence 99999999999999876321 11122222222 257999999999998652111 1112222111 12458
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
++++||++|. |++++++.+.+.+
T Consensus 139 ~~~~Sa~~~~----------gi~~l~~~l~~~~ 161 (164)
T cd04139 139 YVETSAKTRQ----------NVEKAFYDLVREI 161 (164)
T ss_pred EEEeeCCCCC----------CHHHHHHHHHHHH
Confidence 9999999998 9999999998764
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-13 Score=146.20 Aligned_cols=159 Identities=16% Similarity=0.224 Sum_probs=104.7
Q ss_pred EEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHHH
Q psy1758 925 SAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVER 1004 (1527)
Q Consensus 925 IaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~~ 1004 (1527)
|+++|..++|||||++++......-. ..+..|. ....+.+++.++.+|||||+.+|...+..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~--------------~~pt~g~----~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLES--------------VVPTTGF----NSVAIPTQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccc--------------ccccCCc----ceEEEeeCCeEEEEEECCCCcchhHHHHH
Confidence 78999999999999999985421100 0111122 12346677899999999999999999999
Q ss_pred HHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH--cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEEE
Q psy1758 1005 ILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK--LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIY 1081 (1527)
Q Consensus 1005 ~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~--~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~ 1081 (1527)
+++.+|++|+|+|+++... ...+..+..+.. .++|+++|.||+|+..++. ..++.+.+. +........++++.
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~-~~~~~~~~~~~~~~ 139 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARS---VQEIHKELE-LEPIARGRRWILQG 139 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCC---HHHHHHHhC-ChhhcCCCceEEEE
Confidence 9999999999999987432 222333333332 5799999999999976542 223322221 11111233567888
Q ss_pred eccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1082 TSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1082 ~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
+||++.-...+ ..|+.++|+.+++
T Consensus 140 ~Sa~~~~s~~~----~~~v~~~~~~~~~ 163 (164)
T cd04162 140 TSLDDDGSPSR----MEAVKDLLSQLIN 163 (164)
T ss_pred eeecCCCChhH----HHHHHHHHHHHhc
Confidence 99998321111 1189999988764
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >KOG0081|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-14 Score=144.43 Aligned_cols=153 Identities=20% Similarity=0.224 Sum_probs=110.7
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC---------e--EEEEEeCCChhhHHHHHHhhccc
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH---------G--SITFLDTPGHEAFTAMRARGAKV 139 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~---------~--~i~~iDTPG~e~f~~~~~~~~~~ 139 (1527)
+...+|++|+||||++.+++...|...-..+..+|+....+.++. . .+++|||+|||+|.++....++.
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRD 90 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRD 90 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHh
Confidence 456789999999999999999888766666666777665554421 1 47899999999999999999999
Q ss_pred cCEEEEEEeCCCCC-cHHHHHHHHHHH----HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 140 TDIVVLVVAADDGV-MPQTREAIAHAK----ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 140 aD~~IlVvda~~g~-~~qt~e~i~~~~----~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
|=+.+|++|.++.- .-..+.++.+++ ..+..+|+++||+|+.+.......+. ......++ .|+|++||-
T Consensus 91 AMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa----~~La~kyg--lPYfETSA~ 164 (219)
T KOG0081|consen 91 AMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQA----AALADKYG--LPYFETSAC 164 (219)
T ss_pred hccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHH----HHHHHHhC--CCeeeeccc
Confidence 99999999999732 122334444443 33455999999999976332111111 11122332 699999999
Q ss_pred CCCChhHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~ 229 (1527)
+|.||++..+.+...
T Consensus 165 tg~Nv~kave~Lldl 179 (219)
T KOG0081|consen 165 TGTNVEKAVELLLDL 179 (219)
T ss_pred cCcCHHHHHHHHHHH
Confidence 999999988887643
|
|
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-13 Score=145.29 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=103.0
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|+.|+|||||+++|+... +... .. ... ...|+. ..+...++.++||||||+.++...+.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~--~~~~--~~-~~~--------~~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~ 65 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEE--FPEN--VP-RVL--------PEITIP---ADVTPERVPTTIVDTSSRPQDRANLA 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CCcc--CC-Ccc--------cceEee---eeecCCeEEEEEEeCCCchhhhHHHh
Confidence 79999999999999999998642 2110 00 000 112221 12223557899999999998888888
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHH-HHH-HHHHH--cCCccEEEEeccCCCCCChhh-hHHHHHHHHhhhcccccccCCc
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTR-FVT-RKALK--LGFKPIVVVNKIDRSNARPEW-VVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~-~~~-~~~~~--~glp~IvviNKiD~~~a~~~~-v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
..+..+|++++|+|++++..-+.. ..| ..+.. .++|+++|+||+|+.+..... ..+++......+.. ..+
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-----~~~ 140 (166)
T cd01893 66 AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE-----IET 140 (166)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhc-----ccE
Confidence 888999999999999875443332 223 33332 378999999999997654211 11222111111111 126
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
++.+||++|. |++++++.+.+.+
T Consensus 141 ~~e~Sa~~~~----------~v~~lf~~~~~~~ 163 (166)
T cd01893 141 CVECSAKTLI----------NVSEVFYYAQKAV 163 (166)
T ss_pred EEEecccccc----------CHHHHHHHHHHHh
Confidence 8999999998 9999999987654
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >KOG0395|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-13 Score=148.95 Aligned_cols=157 Identities=22% Similarity=0.242 Sum_probs=117.0
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|.+|+|||+|+.++....|...+.|++. +.....+..++. .+.|+||+|++.|..++..+++.+|+.++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 457899999999999999999999999888877765 444455555554 67789999999999999999999999999
Q ss_pred EEeCCCCCcHHHH----HHHHHHH-HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 146 VVAADDGVMPQTR----EAIAHAK-ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 146 Vvda~~g~~~qt~----e~i~~~~-~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
||++++...-+.. +.+...+ ...+|+++|+||+|+.........+- ......| .++|+++||+.+.+++
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg----~~la~~~--~~~f~E~Sak~~~~v~ 154 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEG----KALARSW--GCAFIETSAKLNYNVD 154 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHH----HHHHHhc--CCcEEEeeccCCcCHH
Confidence 9999995543332 2222222 23579999999999976311111110 0012233 3679999999999999
Q ss_pred HHHHHHHHHHH
Q psy1758 221 KLLENISLQAE 231 (1527)
Q Consensus 221 eL~~~l~~~~~ 231 (1527)
++|..|..+..
T Consensus 155 ~~F~~L~r~~~ 165 (196)
T KOG0395|consen 155 EVFYELVREIR 165 (196)
T ss_pred HHHHHHHHHHH
Confidence 99999986654
|
|
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-13 Score=144.67 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=100.9
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCchH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df~~ 1000 (1527)
.+|+++|.+|+|||||+++++...-.....+. . + +.....+..+ ...+.||||||+.+|..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t----~----------~---~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPT----I----------E---DSYRKQIEVDGQQCMLEILDTAGTEQFTA 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCc----h----------h---hhEEEEEEECCEEEEEEEEECCCccccch
Confidence 47999999999999999999854211000000 0 0 0011123333 35678999999999998
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.....++.+|++++|+|.++... .....++..+.. .++|+++|.||+|+.+.+.. ..++... +.. ..
T Consensus 65 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~-~~~------~~ 136 (163)
T cd04136 65 MRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVV-SREEGQA-LAR------QW 136 (163)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccee-cHHHHHH-HHH------Hc
Confidence 88888999999999999986322 122233333332 36899999999998653211 1111111 111 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..|++++||++|. |+.++++.+.+.+
T Consensus 137 ~~~~~~~Sa~~~~----------~v~~l~~~l~~~~ 162 (163)
T cd04136 137 GCPFYETSAKSKI----------NVDEVFADLVRQI 162 (163)
T ss_pred CCeEEEecCCCCC----------CHHHHHHHHHHhc
Confidence 3589999999998 9999999998654
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.9e-13 Score=145.10 Aligned_cols=159 Identities=20% Similarity=0.234 Sum_probs=104.2
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCch
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~ 999 (1527)
..+|+++|++|+|||||+++++.. .+.. +....+..+.....+.+.+ +.++||||||+.+|.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~--~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 65 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAG--RFPE--------------RTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR 65 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC--CCCC--------------ccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH
Confidence 468999999999999999999743 1110 0111222222333344444 789999999999987
Q ss_pred H-HHHHHHHhcCEEEEEEeCCCCCChhHHHHHH-HHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 1000 G-EVERILSMVDNVLLLIDAVEGPMPQTRFVTR-KALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 1000 ~-ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~-~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
. .....++.+|++++|+|++++...+....|. .+.. .++|+++|.||+|+.+.+. +..+....+..
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~------ 137 (170)
T cd04115 66 KSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQ--VPTDLAQRFAD------ 137 (170)
T ss_pred HhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcC--CCHHHHHHHHH------
Confidence 4 4666789999999999999865555544443 3333 3589999999999865431 11111111111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...+|++.+||+++... .++..+|..+++.+
T Consensus 138 ~~~~~~~e~Sa~~~~~~-------~~i~~~f~~l~~~~ 168 (170)
T cd04115 138 AHSMPLFETSAKDPSEN-------DHVEAIFMTLAHKL 168 (170)
T ss_pred HcCCcEEEEeccCCcCC-------CCHHHHHHHHHHHh
Confidence 12367999999995311 17888888887654
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-13 Score=143.05 Aligned_cols=153 Identities=17% Similarity=0.193 Sum_probs=101.5
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df~~e 1001 (1527)
+|+++|.+|+|||||+++++.. .+.... ...-+-+. ...+..+ .+.++||||||+..|...
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~--~~~~~~------------~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQG--IFVEKY------------DPTIEDSY---RKQVEVDGQQCMLEILDTAGTEQFTAM 65 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--CCCccc------------CCcchheE---EEEEEECCEEEEEEEEECCCcccchhH
Confidence 7999999999999999999843 221100 00001111 1223333 456789999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
....++.+|++++|+|.++....+ ....+..... .++|+++|.||+|+....... .++..... ....
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~-------~~~~ 137 (164)
T cd04175 66 RDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVG-KEQGQNLA-------RQWG 137 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEc-HHHHHHHH-------HHhC
Confidence 999999999999999987643222 2223333322 468999999999986542111 11111111 1123
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+|++++||++|. |++++++++.+.+
T Consensus 138 ~~~~~~Sa~~~~----------~v~~~~~~l~~~l 162 (164)
T cd04175 138 CAFLETSAKAKI----------NVNEIFYDLVRQI 162 (164)
T ss_pred CEEEEeeCCCCC----------CHHHHHHHHHHHh
Confidence 589999999998 9999999998754
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >KOG0073|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.8e-13 Score=133.77 Aligned_cols=157 Identities=19% Similarity=0.237 Sum_probs=117.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.|..+|.++|..|+||||++++|.+..... -.-|..+....+.+++.++++||..||..+...+..|+..+|++|+|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~~---i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwv 90 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTDT---ISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWV 90 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCccc---cCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence 457789999999999999999998876321 12255666677888999999999999999999999999999999999
Q ss_pred EeCCCCC-cHHHHHHHHH----HHHcCCCEEEEEEcccCCcc-hhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGV-MPQTREAIAH----AKISGVPLIVAINKIDKLDI-NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~-~~qt~e~i~~----~~~~~vpiIvviNKiDl~~~-~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|..|.. +.++...+.. -+..+.|++++.||.|+..+ +.+.+...+.-.... ....++++-|||.+|+++.
T Consensus 91 vDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~---ks~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 91 VDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELA---KSHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred EECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhc---cccCceEEEEeccccccHH
Confidence 9998843 3333333333 34568899999999999853 222332222111111 1234689999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
+-+++++..
T Consensus 168 ~gidWL~~~ 176 (185)
T KOG0073|consen 168 EGIDWLCDD 176 (185)
T ss_pred HHHHHHHHH
Confidence 999999754
|
|
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-13 Score=143.19 Aligned_cols=153 Identities=18% Similarity=0.212 Sum_probs=103.6
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df~~e 1001 (1527)
+|+|+|++|+|||||+++|+.....-...+ .+-......+.++ .+++++|||||+.++...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 63 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDP-----------------TIEDSYRKTIVVDGETYTLDILDTAGQEEFSAM 63 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCC-----------------ChhHeEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence 589999999999999999986531111000 0001112223333 468999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
....++.+|++++|+|.++... .+....+..... .++|+++|+||+|+...+. ...+++....... .
T Consensus 64 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~-------~ 135 (160)
T cd00876 64 RDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQ-VSKEEGKALAKEW-------G 135 (160)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccce-ecHHHHHHHHHHc-------C
Confidence 9999999999999999986421 223333433332 3689999999999876321 1122333222221 2
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.|++++||++|. |++++++.|.+++
T Consensus 136 ~~~~~~S~~~~~----------~i~~l~~~l~~~i 160 (160)
T cd00876 136 CPFIETSAKDNI----------NIDEVFKLLVREI 160 (160)
T ss_pred CcEEEeccCCCC----------CHHHHHHHHHhhC
Confidence 579999999998 9999999998653
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >KOG1423|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.9e-13 Score=147.41 Aligned_cols=168 Identities=21% Similarity=0.224 Sum_probs=117.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC--
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD-- 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d-- 997 (1527)
.+..+||+||.||+|||||.|.|+++.- .+..++..+|.....+.+..+.+++.|.||||...
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv---------------~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~ 134 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKV---------------SAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKK 134 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCcc---------------ccccccccceeeeeeEEEecCceEEEEecCCcccccc
Confidence 4667999999999999999999997611 12334445677777788888999999999999432
Q ss_pred ----------chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHc-CCccEEEEeccCCCCCChhhhHHHHHHHH-
Q psy1758 998 ----------FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL-GFKPIVVVNKIDRSNARPEWVVDATFDLF- 1065 (1527)
Q Consensus 998 ----------f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~-glp~IvviNKiD~~~a~~~~v~~~~~~~~- 1065 (1527)
|..+..+++..||.+++|+||++.-.+-.-.++..+.++ .+|-|+|+||+|.... ..++-.+.+.+
T Consensus 135 ~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~--k~~Ll~l~~~Lt 212 (379)
T KOG1423|consen 135 MHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQ--KRLLLNLKDLLT 212 (379)
T ss_pred hhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchh--hhHHhhhHHhcc
Confidence 556778899999999999999863222223455555554 6899999999997643 12222222222
Q ss_pred ---------------hhhccc---ccccCC----cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1066 ---------------DKLCAT---EEQLDF----PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1066 ---------------~~l~~~---~~~~~~----pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
...... .....+ .+|++||++|. |+++|-+++....|+-
T Consensus 213 ~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~----------GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 213 NGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGE----------GIKDLKQYLMSQAPPG 273 (379)
T ss_pred ccccchhhhhHHHHhccCCcccccccccCcccceeEEEEeccccc----------CHHHHHHHHHhcCCCC
Confidence 111100 000112 28999999998 9999999999888754
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.4e-13 Score=146.52 Aligned_cols=156 Identities=14% Similarity=0.175 Sum_probs=105.6
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|++++|||||+.++... .+.. .....|.++ ..+.+.++.+++|||||+..|...
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~--~~~~-------------~~~T~~~~~----~~~~~~~~~~~l~D~~G~~~~~~~ 77 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLG--EVVT-------------TIPTIGFNV----ETVEYKNLKFTMWDVGGQDKLRPL 77 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcC--Cccc-------------cCCccccce----EEEEECCEEEEEEECCCCHhHHHH
Confidence 358999999999999999999632 1110 011223222 245567899999999999999998
Q ss_pred HHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
+..+++.+|++|+|+|+++.- .......+..... ...|+++|.||.|+++.... +++...+. +. ......
T Consensus 78 ~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~l~-~~-~~~~~~ 152 (182)
T PTZ00133 78 WRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMST---TEVTEKLG-LH-SVRQRN 152 (182)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCH---HHHHHHhC-CC-cccCCc
Confidence 888999999999999998621 1222223333222 35788999999998764322 22322221 11 111223
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
++++.+||++|. |+++++++|.+.+
T Consensus 153 ~~~~~~Sa~tg~----------gv~e~~~~l~~~i 177 (182)
T PTZ00133 153 WYIQGCCATTAQ----------GLYEGLDWLSANI 177 (182)
T ss_pred EEEEeeeCCCCC----------CHHHHHHHHHHHH
Confidence 567789999998 9999999998755
|
|
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.2e-13 Score=143.91 Aligned_cols=158 Identities=19% Similarity=0.236 Sum_probs=102.8
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
...+|+++|.+|+|||||+++++... +... .....|.........+......+.||||||+..|..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~ 69 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNK--FDTQ------------LFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS 69 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCC--CCcC------------cCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHH
Confidence 45789999999999999999998531 1100 001122222222222222345678999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHH-------HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKAL-------KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~-------~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
.....++.+|++++|+|.++....+....| .... ..++|.++|.||+|+.... ...+++.+...+..
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~--- 144 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ--VSTEEAQAWCRENG--- 144 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccc--cCHHHHHHHHHHCC---
Confidence 888899999999999999865322222222 2121 1357999999999986321 11233333222221
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
..+++.+||++|. |+..+++.+++.
T Consensus 145 ---~~~~~e~Sa~~~~----------~v~~~~~~~~~~ 169 (170)
T cd04116 145 ---DYPYFETSAKDAT----------NVAAAFEEAVRR 169 (170)
T ss_pred ---CCeEEEEECCCCC----------CHHHHHHHHHhh
Confidence 2368999999998 999999998764
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.9e-13 Score=148.09 Aligned_cols=160 Identities=21% Similarity=0.177 Sum_probs=104.6
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|.+|+|||||+++++.......... ...+.+.......+......++||||||+..|.....
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~-------------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 68 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFI-------------ATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTH 68 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcC-------------CcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhH
Confidence 699999999999999999975422111100 0111122111122222236889999999999988888
Q ss_pred HHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
..++.+|++|+|+|++.....+ ....+..+.+ .++|+++|+||+|+...+.. ..++...+.. ...+|+
T Consensus 69 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~-~~~~~~~l~~-------~~~~~~ 140 (191)
T cd04112 69 AYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVV-KREDGERLAK-------EYGVPF 140 (191)
T ss_pred HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhcccc-CHHHHHHHHH-------HcCCeE
Confidence 8899999999999998743222 2233333333 36899999999998643211 1122222111 123589
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
+.+||++|. |++++++.+.+.++..
T Consensus 141 ~e~Sa~~~~----------~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 141 METSAKTGL----------NVELAFTAVAKELKHR 165 (191)
T ss_pred EEEeCCCCC----------CHHHHHHHHHHHHHHh
Confidence 999999998 9999999999887644
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-13 Score=165.20 Aligned_cols=154 Identities=17% Similarity=0.150 Sum_probs=106.0
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCe-EEEEEeCCCCCCc-
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT-RINIIDTPGHADF- 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~-~iniiDTPGh~df- 998 (1527)
.++.|+|+|.+|+|||||+|+|+...-. .+...|.|++.....+.+.+. .+.||||||....
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~----------------v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l 259 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVY----------------AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHL 259 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcee----------------eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccC
Confidence 3467999999999999999999754111 122356777777777877664 8999999998432
Q ss_pred hH-------HHHHHHHhcCEEEEEEeCCCCCChhHH----HHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhh
Q psy1758 999 GG-------EVERILSMVDNVLLLIDAVEGPMPQTR----FVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDK 1067 (1527)
Q Consensus 999 ~~-------ev~~~l~~aD~ailVVDa~~G~~~qt~----~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~ 1067 (1527)
.. .+...+..+|++|+|+|++++...... .++..+...++|+++|+||+|+...... ..+ .. .
T Consensus 260 p~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-~~~----~~-~ 333 (426)
T PRK11058 260 PHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-RID----RD-E 333 (426)
T ss_pred CHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH-HHH----HH-h
Confidence 11 123346889999999999986443322 2333333447899999999998643111 111 00 0
Q ss_pred hcccccccCCc-EEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1068 LCATEEQLDFP-VIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1068 l~~~~~~~~~p-vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
...| ++++||++|. |++.|++.|.+.++.
T Consensus 334 -------~~~~~~v~ISAktG~----------GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 334 -------ENKPIRVWLSAQTGA----------GIPLLFQALTERLSG 363 (426)
T ss_pred -------cCCCceEEEeCCCCC----------CHHHHHHHHHHHhhh
Confidence 1234 5889999998 999999999988853
|
|
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.4e-13 Score=147.77 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=98.9
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCch--
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG-- 999 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~-- 999 (1527)
+|+|+|.+|+|||||+++++... +... ..+.++.......+.+++ +.++||||||+.+|.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~--f~~~--------------~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~ 65 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQE--FPEE--------------YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT 65 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCC--CCcc--------------cCCccccccceeEEEECCEEEEEEEEeCCCcccCCcc
Confidence 79999999999999999998542 1100 011111111112344555 678899999987653
Q ss_pred --HH----HHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH------cCCccEEEEeccCCCCCChhhhHHHHHHHHh
Q psy1758 1000 --GE----VERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK------LGFKPIVVVNKIDRSNARPEWVVDATFDLFD 1066 (1527)
Q Consensus 1000 --~e----v~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~ 1066 (1527)
.+ ...+++.+|++|+|+|++++..-+. ..++....+ .++|+++|.||+|+...+... .+++..
T Consensus 66 ~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~-~~~~~~--- 141 (198)
T cd04142 66 AGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAP-RHVLSV--- 141 (198)
T ss_pred chhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccccc-HHHHHH---
Confidence 22 2345789999999999987432222 222233322 468999999999996543211 111211
Q ss_pred hhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1067 KLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1067 ~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+.. ....+|++++||++|. |++.||+.+++.+-
T Consensus 142 -~~~--~~~~~~~~e~Sak~g~----------~v~~lf~~i~~~~~ 174 (198)
T cd04142 142 -LVR--KSWKCGYLECSAKYNW----------HILLLFKELLISAT 174 (198)
T ss_pred -HHH--HhcCCcEEEecCCCCC----------CHHHHHHHHHHHhh
Confidence 111 1124689999999998 99999999987653
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.9e-13 Score=148.71 Aligned_cols=161 Identities=19% Similarity=0.207 Sum_probs=115.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC--CeEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN--HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~--~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|....+...+.++++........... ..++.+|||+|+++|..++..++..++++++|+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 689999999999999999999999988888877766666555444 347889999999999999999999999999999
Q ss_pred eCCC-CCcHHHHHHH-HHHHH---cCCCEEEEEEcccCCcchhHHH--HHHH-------hhhcccccccCCCCcEEEeec
Q psy1758 148 AADD-GVMPQTREAI-AHAKI---SGVPLIVAINKIDKLDINLDRI--KQDL-------ISEQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 148 da~~-g~~~qt~e~i-~~~~~---~~vpiIvviNKiDl~~~~~~~~--~~~l-------~~~~~~~~~~~~~~~v~~iSA 213 (1527)
|..+ ....+..+.| ..+.. .+.|+++++||+|+........ ...+ ...............++++||
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 165 (219)
T COG1100 86 DSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSA 165 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeec
Confidence 9997 2223323322 23333 3589999999999987432111 0000 000000000011223899999
Q ss_pred c--CCCChhHHHHHHHHHH
Q psy1758 214 K--TGVGINKLLENISLQA 230 (1527)
Q Consensus 214 k--tg~gI~eL~~~l~~~~ 230 (1527)
+ ++.|+.+++..+....
T Consensus 166 ~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 166 KSLTGPNVNELFKELLRKL 184 (219)
T ss_pred ccCCCcCHHHHHHHHHHHH
Confidence 9 9999999999987654
|
|
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.2e-13 Score=145.31 Aligned_cols=157 Identities=20% Similarity=0.196 Sum_probs=102.6
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe------------cCeEEE
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY------------NGTRIN 988 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~------------~~~~in 988 (1527)
...+|+++|.+++|||||++++....-.-. . ....|.+. ....+.+ ....+.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~-~-------------~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPK-F-------------ITTVGIDF--REKRVVYNSSGPGGTLGRGQRIHLQ 66 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCcc-C-------------CCccceEE--EEEEEEEcCccccccccCCCEEEEE
Confidence 457899999999999999999975421100 0 00111111 1112222 236789
Q ss_pred EEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHH
Q psy1758 989 IIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFD 1063 (1527)
Q Consensus 989 iiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~ 1063 (1527)
||||||+..|.......++.+|++|+|+|+++...-+.. .++..... .+.|+++|.||+|+.+.+.. ..++...
T Consensus 67 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v-~~~~~~~ 145 (180)
T cd04127 67 LWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQV-SEEQAKA 145 (180)
T ss_pred EEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCcc-CHHHHHH
Confidence 999999999999889999999999999999873222222 22222322 26788999999998654211 1122222
Q ss_pred HHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1064 LFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1064 ~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
... ...+|++.+||++|. |++++++.+.+.+
T Consensus 146 ~~~-------~~~~~~~e~Sak~~~----------~v~~l~~~l~~~~ 176 (180)
T cd04127 146 LAD-------KYGIPYFETSAATGT----------NVEKAVERLLDLV 176 (180)
T ss_pred HHH-------HcCCeEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 111 124579999999998 9999999987654
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-13 Score=128.02 Aligned_cols=81 Identities=25% Similarity=0.352 Sum_probs=74.5
Q ss_pred ceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecc
Q psy1758 1122 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEIC 1201 (1527)
Q Consensus 1122 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~ 1201 (1527)
|.++|||+.+|++ |+++++||++|+|++||.|++... + .+.+|.+|+.+.|.++.+++++.||||++++|++ +.
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~--~--~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~-~~ 74 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRT--G--KKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGID-CA 74 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCC--C--CEEEEeEEEEEeCCCceEccEECCCCEEEEECCC-cc
Confidence 5789999999988 999999999999999999998765 2 3578999999999999999999999999999997 99
Q ss_pred cCCeeeC
Q psy1758 1202 IGSTICD 1208 (1527)
Q Consensus 1202 iGdTi~~ 1208 (1527)
+||||++
T Consensus 75 ~Gdtl~~ 81 (81)
T cd04091 75 SGDTFTD 81 (81)
T ss_pred cCCEecC
Confidence 9999974
|
Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-13 Score=145.29 Aligned_cols=155 Identities=17% Similarity=0.158 Sum_probs=101.6
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df~~e 1001 (1527)
+|+++|.+|+|||||+++++..... ... + ...+.. ....+.++ ...+.+|||||+.+|...
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~-~~~--------~-----~t~~~~---~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 65 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFI-ESY--------D-----PTIEDS---YRKQVEIDGRQCDLEILDTAGTEQFTAM 65 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-ccc--------C-----Ccchhe---EEEEEEECCEEEEEEEEeCCCcccchhh
Confidence 6999999999999999999754211 000 0 001111 01222333 367899999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHH----HHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQT-RFVTRKA----LKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~----~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
....++.+|++++|+|.++...-+. ....... ...++|++++.||+|+...+... .++........ -.
T Consensus 66 ~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~-~~~~~~~~~~~------~~ 138 (168)
T cd04177 66 RELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVS-REDGVSLSQQW------GN 138 (168)
T ss_pred hHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccC-HHHHHHHHHHc------CC
Confidence 9999999999999999986422221 1111222 23478999999999986543211 11111111111 12
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.|++++||++|. |++.++++++..+.
T Consensus 139 ~~~~~~SA~~~~----------~i~~~f~~i~~~~~ 164 (168)
T cd04177 139 VPFYETSARKRT----------NVDEVFIDLVRQII 164 (168)
T ss_pred ceEEEeeCCCCC----------CHHHHHHHHHHHHh
Confidence 579999999998 99999999987654
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.4e-13 Score=141.85 Aligned_cols=156 Identities=19% Similarity=0.174 Sum_probs=102.1
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|.+++|||||+++|+........... -+.+.......+......+++|||||+..|.....
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 67 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHEST--------------TQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGP 67 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCc--------------cceeEEEEEEEECCEEEEEEEEECCchHHHHHhhH
Confidence 7999999999999999999865221110000 01111111122222335789999999999888888
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTRFVT-RKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
..++.+|++++|+|++++...+....| ..+.. .++|+++|+||+|+...+. ...+++..... ...+++
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~~ 139 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRV-VSKSEAEEYAK-------SVGAKH 139 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC-CCHHHHHHHHH-------HcCCEE
Confidence 888999999999999876433332222 22222 2689999999999875331 11122222221 124578
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+++||++|. |++++++++.+.+
T Consensus 140 ~~~s~~~~~----------gi~~~~~~l~~~~ 161 (162)
T cd04123 140 FETSAKTGK----------GIEELFLSLAKRM 161 (162)
T ss_pred EEEeCCCCC----------CHHHHHHHHHHHh
Confidence 999999998 9999999987654
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.1e-13 Score=144.82 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=103.4
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCchH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df~~ 1000 (1527)
++|+++|++|+|||||+++++.........+. +.......+.+. ++.++||||||+.+|..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t-----------------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 64 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPT-----------------IENTFSKIIRYKGQDYHLEIVDTAGQDEYSI 64 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcc-----------------hhhhEEEEEEECCEEEEEEEEECCChHhhHH
Confidence 68999999999999999999854221100000 000001222333 36789999999999998
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.....+..+|++++|+|.++....+. ...+....+ .++|.++|+||+|+...+.. ..++....... .
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~~~-------~ 136 (180)
T cd04137 65 LPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQV-STEEGKELAES-------W 136 (180)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCcc-CHHHHHHHHHH-------c
Confidence 88899999999999999987543333 233333332 46799999999998643211 11122221111 2
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..|++++||++|. |+.+++.++.+.+
T Consensus 137 ~~~~~~~Sa~~~~----------gv~~l~~~l~~~~ 162 (180)
T cd04137 137 GAAFLESSARENE----------NVEEAFELLIEEI 162 (180)
T ss_pred CCeEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 3579999999998 9999999998765
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.4e-13 Score=148.05 Aligned_cols=158 Identities=21% Similarity=0.277 Sum_probs=106.1
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df 998 (1527)
...+|+++|.+|+|||||+++++... +.. ......|+.. ....+.+.+ ..++||||||+..|
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~--~~~------------~~~~t~~~~~--~~~~~~~~~~~~~l~l~D~~G~~~~ 68 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNT--FSG------------SYITTIGVDF--KIRTVEINGERVKLQIWDTAGQERF 68 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCC------------CcCcccccee--EEEEEEECCEEEEEEEEeCCCchhH
Confidence 45789999999999999999997541 110 0011122222 223344443 57899999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH--cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK--LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~--~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.......++.+|++++|+|+++...-+. ..++..... ...|.++|+||+|+...... ..++...... +.
T Consensus 69 ~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~-~~~~~~~~~~-------~~ 140 (199)
T cd04110 69 RTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVV-ETEDAYKFAG-------QM 140 (199)
T ss_pred HHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccccc-CHHHHHHHHH-------Hc
Confidence 9988999999999999999987432222 223333332 25788999999998653211 1122222111 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.++++.+||++|. |++.++++|.+.+.
T Consensus 141 ~~~~~e~Sa~~~~----------gi~~lf~~l~~~~~ 167 (199)
T cd04110 141 GISLFETSAKENI----------NVEEMFNCITELVL 167 (199)
T ss_pred CCEEEEEECCCCc----------CHHHHHHHHHHHHH
Confidence 4679999999998 99999999988763
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-13 Score=142.65 Aligned_cols=136 Identities=22% Similarity=0.206 Sum_probs=90.6
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCC----Cch
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA----DFG 999 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~----df~ 999 (1527)
+|+++|++|+|||||+++|+...-. ...| ..+.+.+ .+|||||+. .+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--------------------~~~t-----~~~~~~~---~~iDt~G~~~~~~~~~ 53 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--------------------YKKT-----QAVEYND---GAIDTPGEYVENRRLY 53 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--------------------cccc-----eeEEEcC---eeecCchhhhhhHHHH
Confidence 7999999999999999999754110 0011 1233433 789999973 233
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
..+...++.+|++++|+|++++...+...++.. .+.|.++|+||+|+.+.. ...++..+.....+ ..|+
T Consensus 54 ~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~------~~~~ 122 (142)
T TIGR02528 54 SALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEAD--VDIERAKELLETAG------AEPI 122 (142)
T ss_pred HHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCcc--cCHHHHHHHHHHcC------CCcE
Confidence 333445789999999999998876665433322 345999999999986422 11222222222211 1268
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHH
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAIL 1108 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~ 1108 (1527)
+++||++|. |++++++.+.
T Consensus 123 ~~~Sa~~~~----------gi~~l~~~l~ 141 (142)
T TIGR02528 123 FEISSVDEQ----------GLEALVDYLN 141 (142)
T ss_pred EEEecCCCC----------CHHHHHHHHh
Confidence 999999998 9999998874
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.6e-13 Score=148.29 Aligned_cols=156 Identities=14% Similarity=0.156 Sum_probs=101.6
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~~e 1001 (1527)
+|+++|.+|+|||||+++|+...-.....+. -|... ...+.+++ ..++||||||+.+|...
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t--------------~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 63 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPT--------------IEDSY---RKQVVVDGQPCMLEVLDTAGQEEYTAL 63 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCc--------------hHhhE---EEEEEECCEEEEEEEEECCCchhhHHH
Confidence 4899999999999999999853211000000 01000 11122333 46899999999999998
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
...+++.+|++|+|+|.++...... ...+..+.. .++|+++|.||+|+...+.-. .++... +. ..
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~-~~~~~~-~~------~~ 135 (190)
T cd04144 64 RDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVS-TEEGAA-LA------RR 135 (190)
T ss_pred HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccC-HHHHHH-HH------HH
Confidence 8899999999999999987432222 233333322 367999999999986432111 111111 11 11
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
..++++.+||++|. |++++++.+++.+-..
T Consensus 136 ~~~~~~e~SAk~~~----------~v~~l~~~l~~~l~~~ 165 (190)
T cd04144 136 LGCEFIEASAKTNV----------NVERAFYTLVRALRQQ 165 (190)
T ss_pred hCCEEEEecCCCCC----------CHHHHHHHHHHHHHHh
Confidence 24578999999998 9999999998766433
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1527 | ||||
| 1zo1_I | 501 | If2, If1, And Trna Fitted To Cryo-Em Data Of E. Col | 1e-148 | ||
| 1zo1_I | 501 | If2, If1, And Trna Fitted To Cryo-Em Data Of E. Col | 4e-07 | ||
| 3izy_P | 537 | Mammalian Mitochondrial Translation Initiation Fact | 7e-98 | ||
| 3izy_P | 537 | Mammalian Mitochondrial Translation Initiation Fact | 3e-11 | ||
| 3e3x_A | 332 | The C-Terminal Part Of Bipa Protein From Vibrio Par | 2e-94 | ||
| 2lkc_A | 178 | Free B.St If2-G2 Length = 178 | 4e-59 | ||
| 2lkc_A | 178 | Free B.St If2-G2 Length = 178 | 1e-09 | ||
| 1r3f_A | 314 | Crystal Structure Of Trna Pseudouridine Synthase Tr | 2e-51 | ||
| 1k8w_A | 327 | Crystal Structure Of The E. Coli Pseudouridine Synt | 3e-51 | ||
| 1zl3_A | 327 | Coupling Of Active Site Motions And Rna Binding Len | 1e-50 | ||
| 1g7s_A | 594 | X-Ray Structure Of Translation Initiation Factor If | 2e-34 | ||
| 1g7s_A | 594 | X-Ray Structure Of Translation Initiation Factor If | 2e-08 | ||
| 1g7r_A | 594 | X-Ray Structure Of Translation Initiation Factor If | 1e-33 | ||
| 1g7r_A | 594 | X-Ray Structure Of Translation Initiation Factor If | 3e-08 | ||
| 2ywe_A | 600 | Crystal Structure Of Lepa From Aquifex Aeolicus Len | 3e-29 | ||
| 1ze2_A | 309 | Conformational Change Of Pseudouridine 55 Synthase | 6e-29 | ||
| 1ze1_A | 309 | Conformational Change Of Pseudouridine 55 Synthase | 7e-29 | ||
| 1r3e_A | 309 | Crystal Structure Of Trna Pseudouridine Synthase Tr | 7e-29 | ||
| 2ab4_A | 309 | Dissecting The Roles Of A Strictly Conserved Tyrosi | 2e-28 | ||
| 1sgv_A | 316 | Structure Of Trna Psi55 Pseudouridine Synthase (Tru | 3e-28 | ||
| 2ywg_A | 600 | Crystal Structure Of Gtp-Bound Lepa From Aquifex Ae | 1e-26 | ||
| 3cb4_D | 599 | The Crystal Structure Of Lepa Length = 599 | 8e-24 | ||
| 3deg_C | 545 | Complex Of Elongating Escherichia Coli 70s Ribosome | 1e-23 | ||
| 1u2r_A | 842 | Crystal Structure Of Adp-Ribosylated Ribosomal Tran | 1e-22 | ||
| 1n0v_C | 842 | Crystal Structure Of Elongation Factor 2 Length = 8 | 1e-22 | ||
| 3zz0_A | 693 | Crystal Structure Of Ribosomal Elongation Factor (E | 1e-21 | ||
| 2xex_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 2e-21 | ||
| 3j25_A | 638 | Structural Basis For Tetm-Mediated Tetracycline Res | 3e-21 | ||
| 3zzu_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 6e-21 | ||
| 3zzt_A | 693 | Crystal Structure Of Staphylococcus Aureus Elongati | 1e-20 | ||
| 3izp_E | 688 | Conformation Of Ef-G During Translocation Length = | 1e-19 | ||
| 3izp_E | 688 | Conformation Of Ef-G During Translocation Length = | 2e-05 | ||
| 1ktv_A | 691 | Crystal Structure Of Elongation Factor G Dimer With | 1e-19 | ||
| 1ktv_A | 691 | Crystal Structure Of Elongation Factor G Dimer With | 3e-05 | ||
| 1efg_A | 691 | The Crystal Structure Of Elongation Factor G Comple | 1e-19 | ||
| 1efg_A | 691 | The Crystal Structure Of Elongation Factor G Comple | 3e-05 | ||
| 1fnm_A | 691 | Structure Of Thermus Thermophilus Ef-G H573a Length | 1e-19 | ||
| 1fnm_A | 691 | Structure Of Thermus Thermophilus Ef-G H573a Length | 3e-05 | ||
| 2bm1_A | 691 | Ribosomal Elongation Factor G (Ef-G) Fusidic Acid R | 1e-19 | ||
| 2bm1_A | 691 | Ribosomal Elongation Factor G (Ef-G) Fusidic Acid R | 2e-05 | ||
| 2bm0_A | 691 | Ribosomal Elongation Factor G (Ef-G) Fusidic Acid R | 3e-19 | ||
| 2bm0_A | 691 | Ribosomal Elongation Factor G (Ef-G) Fusidic Acid R | 2e-05 | ||
| 2bv3_A | 691 | Crystal Structure Of A Mutant Elongation Factor G T | 4e-19 | ||
| 2bv3_A | 691 | Crystal Structure Of A Mutant Elongation Factor G T | 7e-04 | ||
| 2j7k_A | 691 | Crystal Structure Of The T84a Mutant Ef-G:gdpcp Com | 4e-19 | ||
| 2j7k_A | 691 | Crystal Structure Of The T84a Mutant Ef-G:gdpcp Com | 3e-05 | ||
| 2rdo_7 | 704 | 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = | 1e-18 | ||
| 2rdo_7 | 704 | 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = | 1e-09 | ||
| 3j0e_H | 702 | Models For The T. Thermophilus Ribosome Recycling F | 1e-18 | ||
| 3j0e_H | 702 | Models For The T. Thermophilus Ribosome Recycling F | 1e-09 | ||
| 2c77_A | 405 | Ef-Tu Complexed With A Gtp Analog And The Antibioti | 2e-18 | ||
| 4fn5_A | 709 | Elongation Factor G 1 (Pseudomonas Aeruginosa) In C | 2e-18 | ||
| 4fn5_A | 709 | Elongation Factor G 1 (Pseudomonas Aeruginosa) In C | 4e-09 | ||
| 2y0u_Z | 405 | The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bou | 2e-18 | ||
| 2c78_A | 405 | Ef-Tu Complexed With A Gtp Analog And The Antibioti | 2e-18 | ||
| 1exm_A | 405 | Crystal Structure Of Thermus Thermophilus Elongatio | 2e-18 | ||
| 4abr_Z | 405 | Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kir | 4e-18 | ||
| 1aip_A | 405 | Ef-Tu Ef-Ts Complex From Thermus Thermophilus Lengt | 4e-18 | ||
| 2y0y_Z | 405 | The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bo | 4e-18 | ||
| 2wrn_Z | 406 | The Crystal Structure Of The 70s Ribosome Bound To | 4e-18 | ||
| 1ttt_A | 405 | Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Com | 4e-18 | ||
| 1eft_A | 405 | The Crystal Structure Of Elongation Factor Ef-Tu Fr | 5e-18 | ||
| 1d1n_A | 99 | Solution Structure Of The Fmet-Trnafmet Binding Dom | 1e-16 | ||
| 3vqt_A | 548 | Crystal Structure Analysis Of The Translation Facto | 2e-16 | ||
| 1z9b_A | 135 | Solution Structure Of The C1-Subdomain Of Bacillus | 4e-16 | ||
| 3tr5_A | 528 | Structure Of A Peptide Chain Release Factor 3 (Prfc | 4e-16 | ||
| 3hjw_A | 327 | Structure Of A Functional Ribonucleoprotein Pseudou | 1e-15 | ||
| 3mqk_A | 328 | Cbf5-Nop10-Gar1 Complex Binding With 17mer Rna Cont | 1e-15 | ||
| 3lwo_A | 340 | Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONT | 1e-15 | ||
| 2hvy_A | 346 | Crystal Structure Of An HACA BOX RNP FROM PYROCOCCU | 1e-15 | ||
| 2ey4_A | 333 | Crystal Structure Of A Cbf5-Nop10-Gar1 Complex Leng | 1e-15 | ||
| 2apo_A | 357 | Crystal Structure Of The Methanococcus Jannaschii C | 3e-15 | ||
| 2aus_C | 334 | Crystal Structure Of The Archaeal Box HACA SRNP NOP | 4e-15 | ||
| 2rfk_A | 334 | Substrate Rna Positioning In The Archaeal HACA Ribo | 9e-15 | ||
| 3uoq_W | 534 | Crystal Structure Of Release Factor Rf3 Trapped In | 1e-14 | ||
| 2h5e_A | 529 | Crystal Structure Of E.Coli Polypeptide Release Fac | 1e-14 | ||
| 1d2e_A | 397 | Crystal Structure Of Mitochondrial Ef-Tu In Complex | 4e-13 | ||
| 3mmp_A | 678 | Structure Of The Qb Replicase, An Rna-Dependent Rna | 1e-12 | ||
| 3agp_A | 1289 | Structure Of Viral Polymerase Form I Length = 1289 | 3e-12 | ||
| 3u28_A | 400 | Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From | 3e-12 | ||
| 1xb2_A | 409 | Crystal Structure Of Bos Taurus Mitochondrial Elong | 8e-12 | ||
| 1efm_A | 379 | Structure Of The Gdp Domain Of Ef-Tu And Location O | 1e-11 | ||
| 1efm_A | 379 | Structure Of The Gdp Domain Of Ef-Tu And Location O | 3e-09 | ||
| 1efu_A | 385 | Elongation Factor Complex Ef-TuEF-Ts From Escherich | 1e-11 | ||
| 3u6b_A | 394 | Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028 | 1e-11 | ||
| 1ob2_A | 393 | E. Coli Elongation Factor Ef-Tu Complexed With The | 1e-11 | ||
| 1zn0_B | 655 | Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map | 1e-11 | ||
| 1zn0_B | 655 | Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map | 3e-05 | ||
| 1dg1_G | 394 | Whole, Unmodified, Ef-Tu(Elongation Factor Tu). Len | 1e-11 | ||
| 1efc_A | 393 | Intact Elongation Factor From E.Coli Length = 393 | 1e-11 | ||
| 1d8t_A | 393 | Crystal Structure Of Elongation Factor, Tu (Ef-Tu-M | 1e-11 | ||
| 3vmf_A | 440 | Archaeal Protein Length = 440 | 2e-11 | ||
| 3agj_A | 437 | Crystal Structure Of Archaeal Pelota And Gtp-bound | 2e-11 | ||
| 1jny_A | 435 | Crystal Structure Of Sulfolobus Solfataricus Elonga | 8e-11 | ||
| 1mj1_A | 405 | Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIB | 2e-10 | ||
| 3pen_A | 403 | Structure Of Archaeal Initiation Factor Aif2gamma S | 6e-10 | ||
| 3pen_A | 403 | Structure Of Archaeal Initiation Factor Aif2gamma S | 5e-07 | ||
| 4ac9_A | 482 | Crystal Structure Of Translation Elongation Factor | 1e-09 | ||
| 4ac9_A | 482 | Crystal Structure Of Translation Elongation Factor | 2e-07 | ||
| 3sjz_A | 409 | The Structure Of Aif2gamma Subunit Delta 41-45 From | 3e-09 | ||
| 3sjz_A | 409 | The Structure Of Aif2gamma Subunit Delta 41-45 From | 7e-07 | ||
| 1wdt_A | 665 | Crystal Structure Of Ttk003000868 From Thermus Ther | 3e-09 | ||
| 1wdt_A | 665 | Crystal Structure Of Ttk003000868 From Thermus Ther | 1e-05 | ||
| 2pmd_A | 415 | The Structures Of Aif2gamma Subunit From The Archae | 9e-09 | ||
| 2pmd_A | 415 | The Structures Of Aif2gamma Subunit From The Archae | 4e-07 | ||
| 2aho_A | 414 | Structure Of The Archaeal Initiation Factor Eif2 Al | 9e-09 | ||
| 2aho_A | 414 | Structure Of The Archaeal Initiation Factor Eif2 Al | 5e-07 | ||
| 2d74_A | 419 | Crystal Structure Of Translation Initiation Factor | 1e-08 | ||
| 3j2k_7 | 439 | Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associ | 6e-08 | ||
| 1kk0_A | 410 | Structure Of The Large Gamma Subunit Of Initiation | 2e-07 | ||
| 1kk0_A | 410 | Structure Of The Large Gamma Subunit Of Initiation | 5e-06 | ||
| 1f60_A | 458 | Crystal Structure Of The Yeast Elongation Factor Co | 2e-07 | ||
| 1kjz_A | 410 | Structure Of The Large Gamma Subunit Of Initiation | 2e-07 | ||
| 1kjz_A | 410 | Structure Of The Large Gamma Subunit Of Initiation | 2e-07 | ||
| 1kk3_A | 410 | Structure Of The Wild-Type Large Gamma Subunit Of I | 2e-07 | ||
| 1kk3_A | 410 | Structure Of The Wild-Type Large Gamma Subunit Of I | 2e-07 | ||
| 3p26_A | 483 | Crystal Structure Of S. Cerevisiae Hbs1 Protein (Ap | 3e-07 | ||
| 3izq_1 | 611 | Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To | 4e-07 | ||
| 2hdn_B | 335 | Trypsin-Modified Elongation Factor Tu In Complex Wi | 4e-07 | ||
| 2hdn_B | 335 | Trypsin-Modified Elongation Factor Tu In Complex Wi | 3e-06 | ||
| 2hcj_B | 335 | "trypsin-Modified Elongation Factor Tu In Complex W | 4e-07 | ||
| 2hcj_B | 335 | "trypsin-Modified Elongation Factor Tu In Complex W | 3e-06 | ||
| 1s0u_A | 408 | Eif2gamma Apo Length = 408 | 9e-07 | ||
| 1s0u_A | 408 | Eif2gamma Apo Length = 408 | 7e-06 | ||
| 1r5b_A | 467 | Crystal Structure Analysis Of Sup35 Length = 467 | 2e-06 | ||
| 3p27_A | 483 | Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gd | 3e-06 | ||
| 1zun_B | 434 | Crystal Structure Of A Gtp-Regulated Atp Sulfurylas | 4e-06 | ||
| 2crv_A | 120 | Solution Structure Of C-Terminal Domain Of Mitochon | 5e-06 | ||
| 1jos_A | 128 | Ribosome Binding Factor A(Rbfa) Length = 128 | 1e-05 | ||
| 3r9w_A | 307 | Crystal Structure Of Era In Complex With Mggdpnp An | 3e-05 | ||
| 3iev_A | 308 | Crystal Structure Of Era In Complex With Mggnp And | 3e-05 | ||
| 3mca_A | 592 | Structure Of The Dom34-Hbs1 Complex And Implication | 1e-04 | ||
| 2qtf_A | 364 | Crystal Structure Of A Gtp-Binding Protein From The | 3e-04 |
| >pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s Initiation Complex Length = 501 | Back alignment and structure |
|
| >pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s Initiation Complex Length = 501 | Back alignment and structure |
|
| >pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2 Length = 537 | Back alignment and structure |
|
| >pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2 Length = 537 | Back alignment and structure |
|
| >pdb|3E3X|A Chain A, The C-Terminal Part Of Bipa Protein From Vibrio Parahaemolyticus Rimd 2210633 Length = 332 | Back alignment and structure |
|
| >pdb|2LKC|A Chain A, Free B.St If2-G2 Length = 178 | Back alignment and structure |
|
| >pdb|2LKC|A Chain A, Free B.St If2-G2 Length = 178 | Back alignment and structure |
|
| >pdb|1R3F|A Chain A, Crystal Structure Of Trna Pseudouridine Synthase Trub And Its Rna Complex: Rna-Protein Recognition Through A Combination Of Rigid Docking And Induced Fit Length = 314 | Back alignment and structure |
|
| >pdb|1K8W|A Chain A, Crystal Structure Of The E. Coli Pseudouridine Synthase Trub Bound To A T Stem-Loop Rna Length = 327 | Back alignment and structure |
|
| >pdb|1ZL3|A Chain A, Coupling Of Active Site Motions And Rna Binding Length = 327 | Back alignment and structure |
|
| >pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Complexed With Gdp Length = 594 | Back alignment and structure |
|
| >pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Complexed With Gdp Length = 594 | Back alignment and structure |
|
| >pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Length = 594 | Back alignment and structure |
|
| >pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Length = 594 | Back alignment and structure |
|
| >pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|1ZE2|A Chain A, Conformational Change Of Pseudouridine 55 Synthase Upon Its Association With Rna Substrate Length = 309 | Back alignment and structure |
|
| >pdb|1ZE1|A Chain A, Conformational Change Of Pseudouridine 55 Synthase Upon Its Association With Rna Substrate Length = 309 | Back alignment and structure |
|
| >pdb|1R3E|A Chain A, Crystal Structure Of Trna Pseudouridine Synthase Trub And Its Rna Complex: Rna-Protein Recognition Through A Combination Of Rigid Docking And Induced Fit Length = 309 | Back alignment and structure |
|
| >pdb|2AB4|A Chain A, Dissecting The Roles Of A Strictly Conserved Tyrosine In Substrate Recognition And Catalysis By Pseudouridine 55 Synthase Length = 309 | Back alignment and structure |
|
| >pdb|1SGV|A Chain A, Structure Of Trna Psi55 Pseudouridine Synthase (Trub) Length = 316 | Back alignment and structure |
|
| >pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus Length = 600 | Back alignment and structure |
|
| >pdb|3CB4|D Chain D, The Crystal Structure Of Lepa Length = 599 | Back alignment and structure |
|
| >pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And Ef4(Lepa)- Gmppnp Length = 545 | Back alignment and structure |
|
| >pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase From Saccharomyces Cerevisiae Length = 842 | Back alignment and structure |
|
| >pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2 Length = 842 | Back alignment and structure |
|
| >pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G From Staphylococcus Aureus With A Fusidic Acid Hyper-Sensitivity Mutation M16i Length = 693 | Back alignment and structure |
|
| >pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G Length = 693 | Back alignment and structure |
|
| >pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance Length = 638 | Back alignment and structure |
|
| >pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G With Mutations M16i And F88l Length = 693 | Back alignment and structure |
|
| >pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G With A Fusidic-Acid-Resistant Mutation F88l Length = 693 | Back alignment and structure |
|
| >pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation Length = 688 | Back alignment and structure |
|
| >pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation Length = 688 | Back alignment and structure |
|
| >pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without Nucleotide Length = 691 | Back alignment and structure |
|
| >pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without Nucleotide Length = 691 | Back alignment and structure |
|
| >pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed With Gdp, At 2.7 Angstroms Resolution Length = 691 | Back alignment and structure |
|
| >pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed With Gdp, At 2.7 Angstroms Resolution Length = 691 | Back alignment and structure |
|
| >pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a Length = 691 | Back alignment and structure |
|
| >pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a Length = 691 | Back alignment and structure |
|
| >pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant Mutant G16v Length = 691 | Back alignment and structure |
|
| >pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant Mutant G16v Length = 691 | Back alignment and structure |
|
| >pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant Mutant T84a Length = 691 | Back alignment and structure |
|
| >pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant Mutant T84a Length = 691 | Back alignment and structure |
|
| >pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped With A Gtp Analogue Length = 691 | Back alignment and structure |
|
| >pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped With A Gtp Analogue Length = 691 | Back alignment and structure |
|
| >pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex Length = 691 | Back alignment and structure |
|
| >pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex Length = 691 | Back alignment and structure |
|
| >pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = 704 | Back alignment and structure |
|
| >pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = 704 | Back alignment and structure |
|
| >pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor And The E. Coli Elongation Factor G Bound To The E. Coli Post-Termination Complex Length = 702 | Back alignment and structure |
|
| >pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor And The E. Coli Elongation Factor G Bound To The E. Coli Post-Termination Complex Length = 702 | Back alignment and structure |
|
| >pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic Ge2270 A Length = 405 | Back alignment and structure |
|
| >pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex With Argyrin B Length = 709 | Back alignment and structure |
|
| >pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex With Argyrin B Length = 709 | Back alignment and structure |
|
| >pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome Length = 405 | Back alignment and structure |
|
| >pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic Pulvomycin Length = 405 | Back alignment and structure |
|
| >pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation Factor Tu (Ef-Tu) In Complex With The Gtp Analogue Gppnhp. Length = 405 | Back alignment and structure |
|
| >pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin With The 70s Ribosome Length = 405 | Back alignment and structure |
|
| >pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus Length = 405 | Back alignment and structure |
|
| >pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome Length = 405 | Back alignment and structure |
|
| >pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu And Trna (Part 1 Of 4). Length = 406 | Back alignment and structure |
|
| >pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex Length = 405 | Back alignment and structure |
|
| >pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From Thermus Aquaticus In The Gtp Conformation Length = 405 | Back alignment and structure |
|
| >pdb|1D1N|A Chain A, Solution Structure Of The Fmet-Trnafmet Binding Domain Of Becillus Stearothermophillus Translation Initiation Factor If2 Length = 99 | Back alignment and structure |
|
| >pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3 Length = 548 | Back alignment and structure |
|
| >pdb|1Z9B|A Chain A, Solution Structure Of The C1-Subdomain Of Bacillus Stearothermophilus Translation Initiation Factor If2 Length = 135 | Back alignment and structure |
|
| >pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From Coxiella Burnetii Length = 528 | Back alignment and structure |
|
| >pdb|3HJW|A Chain A, Structure Of A Functional Ribonucleoprotein Pseudouridine Synthase Bound To A Substrate Rna Length = 327 | Back alignment and structure |
|
| >pdb|3MQK|A Chain A, Cbf5-Nop10-Gar1 Complex Binding With 17mer Rna Containing Aca Trinucleotide Length = 328 | Back alignment and structure |
|
| >pdb|3LWO|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING 5BRU Length = 340 | Back alignment and structure |
|
| >pdb|2HVY|A Chain A, Crystal Structure Of An HACA BOX RNP FROM PYROCOCCUS FURIOSUS Length = 346 | Back alignment and structure |
|
| >pdb|2EY4|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex Length = 333 | Back alignment and structure |
|
| >pdb|2APO|A Chain A, Crystal Structure Of The Methanococcus Jannaschii Cbf5 Nop10 Complex Length = 357 | Back alignment and structure |
|
| >pdb|2AUS|C Chain C, Crystal Structure Of The Archaeal Box HACA SRNP NOP10-Cbf5 Complex Length = 334 | Back alignment and structure |
|
| >pdb|2RFK|A Chain A, Substrate Rna Positioning In The Archaeal HACA Ribonucleoprotein Complex Length = 334 | Back alignment and structure |
|
| >pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome (Without Viomycin) Length = 534 | Back alignment and structure |
|
| >pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3 Length = 529 | Back alignment and structure |
|
| >pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With Gdp Length = 397 | Back alignment and structure |
|
| >pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna Polymerase Consisting Of Viral And Host Proteins Length = 678 | Back alignment and structure |
|
| >pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I Length = 1289 | Back alignment and structure |
|
| >pdb|3U28|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From Saccharomyces Cerevisiae Length = 400 | Back alignment and structure |
|
| >pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation Factor TuTS COMPLEX Length = 409 | Back alignment and structure |
|
| >pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The Amino Acids Homologous To Ras Oncogene Proteins Length = 379 | Back alignment and structure |
|
| >pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The Amino Acids Homologous To Ras Oncogene Proteins Length = 379 | Back alignment and structure |
|
| >pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli Length = 385 | Back alignment and structure |
|
| >pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028 Length = 394 | Back alignment and structure |
|
| >pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna Length = 393 | Back alignment and structure |
|
| >pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The 50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf Length = 655 | Back alignment and structure |
|
| >pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The 50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf Length = 655 | Back alignment and structure |
|
| >pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu). Length = 394 | Back alignment and structure |
|
| >pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli Length = 393 | Back alignment and structure |
|
| >pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp) Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic Length = 393 | Back alignment and structure |
|
| >pdb|3VMF|A Chain A, Archaeal Protein Length = 440 | Back alignment and structure |
|
| >pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha Complex Length = 437 | Back alignment and structure |
|
| >pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation Factor 1 Alpha In Complex With Gdp Length = 435 | Back alignment and structure |
|
| >pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s Ribosome Length = 405 | Back alignment and structure |
|
| >pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit Delta 37-47 From Sulfolobus Solfataricus In The Gdp-Bound Form. Length = 403 | Back alignment and structure |
|
| >pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit Delta 37-47 From Sulfolobus Solfataricus In The Gdp-Bound Form. Length = 403 | Back alignment and structure |
|
| >pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis In Complex With Gdp Length = 482 | Back alignment and structure |
|
| >pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis In Complex With Gdp Length = 482 | Back alignment and structure |
|
| >pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From Archaeon Sulfolobus Solfataricus Complexed With Gdp And Gdpnp Length = 409 | Back alignment and structure |
|
| >pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From Archaeon Sulfolobus Solfataricus Complexed With Gdp And Gdpnp Length = 409 | Back alignment and structure |
|
| >pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus Thermophilus Hb8 Length = 665 | Back alignment and structure |
|
| >pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus Thermophilus Hb8 Length = 665 | Back alignment and structure |
|
| >pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon Sulfolobus Solfataricus In The Gdp-Bound Form. Length = 415 | Back alignment and structure |
|
| >pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon Sulfolobus Solfataricus In The Gdp-Bound Form. Length = 415 | Back alignment and structure |
|
| >pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha- Gamma Heterodimer From Sulfolobus Solfataricus Complexed With Gdpnp Length = 414 | Back alignment and structure |
|
| >pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha- Gamma Heterodimer From Sulfolobus Solfataricus Complexed With Gdpnp Length = 414 | Back alignment and structure |
|
| >pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor Aif2betagamma Heterodimer Length = 419 | Back alignment and structure |
|
| >pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated Termination Complex Length = 439 | Back alignment and structure |
|
| >pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi Length = 410 | Back alignment and structure |
|
| >pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi Length = 410 | Back alignment and structure |
|
| >pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex Eef1a:eef1ba Length = 458 | Back alignment and structure |
|
| >pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi-G235d Mutant Length = 410 | Back alignment and structure |
|
| >pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi-G235d Mutant Length = 410 | Back alignment and structure |
|
| >pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi Complexed With Gdp-Mg2+ Length = 410 | Back alignment and structure |
|
| >pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi Complexed With Gdp-Mg2+ Length = 410 | Back alignment and structure |
|
| >pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Apo-Form), A Translational Gtpase Involved In Rna Quality Control Pathways And Interacting With Dom34PELOTA Length = 483 | Back alignment and structure |
|
| >pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A Translating Ribosome Length = 611 | Back alignment and structure |
|
| >pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With Tetracycline At 2.8 Angstrom Resolution Length = 335 | Back alignment and structure |
|
| >pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With Tetracycline At 2.8 Angstrom Resolution Length = 335 | Back alignment and structure |
|
| >pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With Tetracycline" Length = 335 | Back alignment and structure |
|
| >pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With Tetracycline" Length = 335 | Back alignment and structure |
|
| >pdb|1S0U|A Chain A, Eif2gamma Apo Length = 408 | Back alignment and structure |
|
| >pdb|1S0U|A Chain A, Eif2gamma Apo Length = 408 | Back alignment and structure |
|
| >pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35 Length = 467 | Back alignment and structure |
|
| >pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound Form), A Translational Gtpase Involved In Rna Quality Control Pathways And Interacting With Dom34PELOTA Length = 483 | Back alignment and structure |
|
| >pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase Heterodimer From Pseudomonas Syringae Length = 434 | Back alignment and structure |
|
| >pdb|2CRV|A Chain A, Solution Structure Of C-Terminal Domain Of Mitochondrial Translational Initiationfactor 2 Length = 120 | Back alignment and structure |
|
| >pdb|1JOS|A Chain A, Ribosome Binding Factor A(Rbfa) Length = 128 | Back alignment and structure |
|
| >pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And Nucleotides 1506- 1542 Of 16s Ribosomal Rna Length = 307 | Back alignment and structure |
|
| >pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3' End Of 16s Rrna Length = 308 | Back alignment and structure |
|
| >pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For Its Role In No-Go Decay Length = 592 | Back alignment and structure |
|
| >pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The Hyperthermophilic Archaeon Sulfolobus Solfataricus Length = 364 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} Length = 501 | Back alignment and structure |
|---|
Score = 810 bits (2094), Expect = 0.0
Identities = 272/472 (57%), Positives = 367/472 (77%)
Query: 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE 127
RAP+VTIMGHVDHGKTSLL+YIR T V EAGGITQHIGAY+V T +G ITFLDTPGH
Sbjct: 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHA 62
Query: 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR 187
AFT+MRARGA+ TDIVVLVVAADDGVMPQT EAI HAK + VP++VA+NKIDK + + DR
Sbjct: 63 AFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDR 122
Query: 188 IKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVI 247
+K +L ++PEE+GG S F+ +SAK G GI++LL+ I LQAE+LELKA A G +
Sbjct: 123 VKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAV 182
Query: 248 IESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEIQ 307
IES LDKG+GPVATVL++ GTL DIV+ G YGR+R+M NE G+ +LEAGPSIPVEI
Sbjct: 183 IESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEIL 242
Query: 308 GLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNL 367
GL+ VP +G+E+ V+ +EKKARE+ L+RQGKFR+VKL++Q+ K ENMF ++ + +V +
Sbjct: 243 GLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEV 302
Query: 368 LIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVR 427
I++K DV GS E +++SL LSTD+VK+++I + VG I E+D LA AS AI++GFNVR
Sbjct: 303 NIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVR 362
Query: 428 ADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGLAEIRQVILVNKV 487
ADAS RK+ + ++++RY+++IYN+I E+K+ ++ ++ E K+ ++GLAE+R V K
Sbjct: 363 ADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKF 422
Query: 488 SKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFEC 539
IAGC + EG+++R + IR+LR+ +I+ GEL+SL+RFKD+V EV+ G EC
Sbjct: 423 GAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMEC 474
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} Length = 501 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 7e-11
Identities = 47/135 (34%), Positives = 65/135 (48%), Gaps = 24/135 (17%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKER-GIT--IFSKNCSIEYN 983
I+ HVDHGKT+L+++ I + E GIT I + + +E
Sbjct: 9 IMGHVDHGKTSLLEY-----------------IRSTKVASGEAGGITQHIGAYH--VETE 49
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
I +DTPGHA F R D V+L++ A +G MPQT + A K P+VV
Sbjct: 50 NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHA-KAAQVPVVV 108
Query: 1044 -VNKIDRSNARPEWV 1057
VNKID+ A P+ V
Sbjct: 109 AVNKIDKPEADPDRV 123
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} Length = 537 | Back alignment and structure |
|---|
Score = 755 bits (1951), Expect = 0.0
Identities = 206/514 (40%), Positives = 304/514 (59%), Gaps = 42/514 (8%)
Query: 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG-SITFLDTPGH 126
R+P+VTIMGHVDHGKT+LLD +RKT V EAGGITQHIGA+ V G ITFLDTPGH
Sbjct: 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGH 62
Query: 127 EAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD 186
AF+AMRARG +VTDIV+LVVAADDGVM QT E+I HAK + VP+++AINK DK + + +
Sbjct: 63 AAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPE 122
Query: 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGV 246
++K++L++ V+ E+YGG + +SA TG + L E AE+LELKA T +G
Sbjct: 123 KVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEMLELKADPTGAVEGT 182
Query: 247 IIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEI 306
+IES DKG+GPV T +IQ GTLR I+VAG S+ ++R M +ENG+ + EA PS+PV I
Sbjct: 183 VIESFTDKGRGPVTTAIIQRGTLRKGSILVAGKSWAKVRLMFDENGRAVNEAYPSMPVGI 242
Query: 307 QGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMF---------- 356
G +P +G+E+ + +E +ARE+ +R+ + K + E
Sbjct: 243 IGWRDLPSAGDEILEVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDR 302
Query: 357 ---------------------------NDINKEKVKNLLIIIKTDVYGSREVLTESLKNL 389
+ + L +I+K DV GS E + +
Sbjct: 303 EKYGTVHWKERSYIKYREKRQQQPLKPKEKLERDSNVLPVIVKGDVDGSVEAILNVMDTY 362
Query: 390 -STDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADASTRKLAQINNINIRYHNI 448
++ + ++ ++H VG+I+E+D+NLA +I GFNV A ++LA + I+ H I
Sbjct: 363 DASHECELDLVHFGVGDISENDVNLAETFHGVIYGFNVNAGNVIQQLAAKKGVKIKLHKI 422
Query: 449 IYNIIKEIKSEITNLIPLEKKENLLGLAEIRQVILVN---KVSKIAGCYILEGLIRRDSK 505
IY +I++++ E+++ +P +E+ +G A I + K +AGC + +G I + K
Sbjct: 423 IYRLIEDLQEELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKK 482
Query: 506 IRILRNKNIIWTGELDSLKRFKDNVKEVKAGFEC 539
+++RN ++IW G L SLK KD+ VK G +C
Sbjct: 483 FKLIRNGHVIWKGSLISLKHHKDDTSVVKTGMDC 516
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} Length = 537 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 8e-12
Identities = 45/140 (32%), Positives = 62/140 (44%), Gaps = 39/140 (27%)
Query: 930 HVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERG-IT--I--FSKNCSIEYNG 984
HVDHGKTTL+D L RK + E G IT I F + +G
Sbjct: 12 HVDHGKTTLLDKL-------RK----------TQVAAMEAGGITQHIGAFLVSLP---SG 51
Query: 985 TRINIIDTPGHADFGGEVERILSM-------VDNVLLLIDAVEGPMPQTRFVTRKALKLG 1037
+I +DTPGHA F +M D V+L++ A +G M QT + A
Sbjct: 52 EKITFLDTPGHAAF-------SAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAH 104
Query: 1038 FKPIVVVNKIDRSNARPEWV 1057
++ +NK D++ A PE V
Sbjct: 105 VPIVLAINKCDKAEADPEKV 124
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* Length = 594 | Back alignment and structure |
|---|
Score = 559 bits (1442), Expect = 0.0
Identities = 139/555 (25%), Positives = 238/555 (42%), Gaps = 83/555 (14%)
Query: 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGS---------- 117
R+PIV+++GHVDHGKT+LLD+IR + V EAGGITQHIGA + +
Sbjct: 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKF 63
Query: 118 --------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGV 169
+ F+DTPGHEAFT +R RG + D+ +L+V ++G PQT+EA+ ++
Sbjct: 64 SIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRT 123
Query: 170 PLIVAINKIDKL--------------------------DINLDRIKQDLISEQVIPEEY- 202
P +VA NKID++ D + + L E E +
Sbjct: 124 PFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFD 183
Query: 203 -----GGASPFISISAKTGVGINKLLENISLQAEIL---ELKAPVTTPAKGVIIESRLDK 254
I ISA TG GI +LL + A+ +LK +PA+G I+E + +
Sbjct: 184 RVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEET 243
Query: 255 GKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNI-LEAGPSIPVEIQGLTKVP 313
G G +I G LR D + S I + + K LE + Q + +V
Sbjct: 244 GLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVV 303
Query: 314 FSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKT 373
+ V R V ++ + + DI + +++K
Sbjct: 304 AAAGIKIVAPGIDDVMAG-----SPLRVVTDPEKVREEILSEIEDIKID-TDEAGVVVKA 357
Query: 374 DVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASK------AIIIGFNVR 427
D GS E + + L+ + + + +G+++ D+ A + II FNV+
Sbjct: 358 DTLGSLEAVVKILR-----DMYVPIKVADIGDVSRRDVVNAGIALQEDRVYGAIIAFNVK 412
Query: 428 ADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKK---ENLLGLAEIRQV--- 481
S + + ++I + N+IY +++E + + + +KK E ++ A IR +
Sbjct: 413 VIPSAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIEEEKKKKWMEAIIKPASIRLIPKL 472
Query: 482 ILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECER 541
+ I G +L G+IR+ + + + G ++S++ +N+K G +
Sbjct: 473 VFRQSKPAIGGVEVLTGVIRQGYPLMNDDGETV---GTVESMQDKGENLKSASRGQKVA- 528
Query: 542 LSRIEN-QIQRDISE 555
I++ + I E
Sbjct: 529 -MAIKDAVYGKTIHE 542
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* Length = 594 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 1e-11
Identities = 51/139 (36%), Positives = 67/139 (48%), Gaps = 36/139 (25%)
Query: 930 HVDHGKTTLIDHLLRQSG---------TFRKNQNINARIMDSNEIEKERGITIFSKNCSI 980
HVDHGKTTL+DH +R S T Q+I A + + IE G F K SI
Sbjct: 13 HVDHGKTTLLDH-IRGSAVASREAGGIT----QHIGATEIPMDVIEGICG--DFLKKFSI 65
Query: 981 EYNGTRINIIDTPGHADF------GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKAL 1034
+ IDTPGH F GG ++ D +L++D EG PQ T++AL
Sbjct: 66 RETLPGLFFIDTPGHEAFTTLRKRGG------ALADLAILIVDINEGFKPQ----TQEAL 115
Query: 1035 KL--GFK-PIVV-VNKIDR 1049
+ ++ P VV NKIDR
Sbjct: 116 NILRMYRTPFVVAANKIDR 134
|
| >3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus} Length = 332 | Back alignment and structure |
|---|
Score = 460 bits (1186), Expect = e-150
Identities = 177/328 (53%), Positives = 240/328 (73%), Gaps = 4/328 (1%)
Query: 1194 ITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRL 1253
TG+ E+ I TIC + LP L++DEPT+T+ F VN SP AG EG F+T+R I RL
Sbjct: 3 ATGLGELKISDTICAQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERL 62
Query: 1254 DHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNG 1313
+ E+ +N+ LRV Q D + VSGRGELHL+ILIENMRREG+EL+VSRP VI +G
Sbjct: 63 EKELVHNVALRVEQTDDPDK-FRVSGRGELHLSILIENMRREGFELAVSRPEVIIXEEDG 121
Query: 1314 ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNE 1373
+L EP+E + +D+ E +QG IM+ + R G+L ++ + K RVR+++ +PSRGLIGFQ E
Sbjct: 122 QLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPDGKGRVRMDFIMPSRGLIGFQTE 181
Query: 1374 FITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLF 1433
F+TLT G+GL+ H F+ Y P ++G+R NGVLI+ +GKA+ +L+ LQ+RGRLF
Sbjct: 182 FMTLTSGSGLLYHTFDHYGPH---XGGNIGQRVNGVLIANAAGKALTNALFNLQERGRLF 238
Query: 1434 INHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLISPIKITLEYAIEF 1493
I H VYEGM+IGIHSRDNDL VN +K KQLTN+R+SG+D+A L PI +TLE A+EF
Sbjct: 239 IGHGVEVYEGMVIGIHSRDNDLTVNALKGKQLTNVRASGTDDAQVLTPPIVMTLEQALEF 298
Query: 1494 INDDELVEITPKNIRLRKRFLKENERKK 1521
I+DDELVE+TP++IR+RK FL E++R +
Sbjct: 299 IDDDELVEVTPESIRIRKXFLTESDRXR 326
|
| >1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A Length = 327 | Back alignment and structure |
|---|
Score = 356 bits (917), Expect = e-112
Identities = 117/276 (42%), Positives = 168/276 (60%), Gaps = 11/276 (3%)
Query: 651 MQFHIKKNKNIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCF 710
HI+ I+GVLLLDKP G+SSN+AL+K+K + NA + G+TG LDP ATG+LP+C
Sbjct: 13 SSGHIEGRHMDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 72
Query: 711 GEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGK 770
GEATKFS YL ++DK Y I LG T+T D +G+I++ + + S E + L F G
Sbjct: 73 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVE-ERPVTFSAEQLAAALDTFRGD 131
Query: 771 ISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGT 830
I QIP MYSALKY+G LY+YAR GI + R+ R I +Y++ I + L L IHCSKGT
Sbjct: 132 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT 191
Query: 831 YIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISS-------- 882
YIR + +D+G+ LGCGAH+ YLRR+ + K +++ + ++ + + E
Sbjct: 192 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 251
Query: 883 --LIPIDILLSSFGIIYLSDLLSKRFLHGQNLFLSD 916
L+P+D S + ++ L S F +G + S
Sbjct: 252 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSG 287
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Length = 178 | Back alignment and structure |
|---|
Score = 344 bits (884), Expect = e-110
Identities = 113/175 (64%), Positives = 136/175 (77%)
Query: 63 AESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLD 122
+ + R P+VTIMGHVDHGKT+LLD IR + V EAGGITQHIGAY V N ITFLD
Sbjct: 2 SHMVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLD 61
Query: 123 TPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLD 182
TPGHEAFT MRARGA+VTDIV+LVVAADDGVMPQT EAI HAK + VP+IVAINK+DK +
Sbjct: 62 TPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPE 121
Query: 183 INLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKA 237
N DR+ Q+L+ ++PEE+GG + F +SAKT G++ LLE I L +E+ ELKA
Sbjct: 122 ANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEELKA 176
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Length = 178 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 2e-15
Identities = 45/132 (34%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERG-ITIFSKNCSIEYNGT 985
I+ HVDHGKTTL+D I S E+E G IT + N
Sbjct: 13 IMGHVDHGKTTLLD-----------------AIRHSKVTEQEAGGITQHIGAYQVTVNDK 55
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
+I +DTPGH F R + D V+L++ A +G MPQT A IV +N
Sbjct: 56 KITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAIN 115
Query: 1046 KIDRSNARPEWV 1057
K+D+ A P+ V
Sbjct: 116 KMDKPEANPDRV 127
|
| >1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A Length = 309 | Back alignment and structure |
|---|
Score = 344 bits (886), Expect = e-108
Identities = 85/256 (33%), Positives = 139/256 (54%), Gaps = 4/256 (1%)
Query: 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYL 720
+ HG+L+ KP G +S++ + +++ L +KVG+ GTLDPFA G+L + + T+ +
Sbjct: 1 MKHGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFY 60
Query: 721 SEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSA 780
+ K Y + LG+ TET DI G++++ + + E I + + +F G+ Q+PP YSA
Sbjct: 61 KDLKKVYWVKMRLGLITETFDITGEVVE-ERECNVTEEEIREAIFSFVGEYDQVPPAYSA 119
Query: 781 LKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIG 840
KYKG LYK AR G I + +KI+KI ++ ++ R+ S GTYIR L DIG
Sbjct: 120 KKYKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGTYIRSLCMDIG 179
Query: 841 KMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLSD 900
LGCGA L R + T+++ LN+ + E + +IP++ L + +
Sbjct: 180 YKLGCGATAVELVRESVGPHTIEESLNVFEA---APEEIENRIIPLEKCLEWLPRVVVHQ 236
Query: 901 LLSKRFLHGQNLFLSD 916
+K L+G + L
Sbjct: 237 ESTKMILNGSQIHLEM 252
|
| >1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2 Length = 316 | Back alignment and structure |
|---|
Score = 327 bits (840), Expect = e-102
Identities = 80/255 (31%), Positives = 134/255 (52%), Gaps = 8/255 (3%)
Query: 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLS 721
G++++DKP G++S++ + + + + ++VG+ GTLDP ATG+L + ATK L+
Sbjct: 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64
Query: 722 EADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSAL 781
A K Y A I LG TT T D EG+++ +IE I+ + G+I Q+P SA+
Sbjct: 65 AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124
Query: 782 KYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYT----IPYLTLRIHCSKGTYIRVLSE 837
K G Y+ AR G +++ + R I+I + ++ + + + I CS GTYIR L+
Sbjct: 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALAR 184
Query: 838 DIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIY 897
D+G LG G H+ LRR + + LD+ ++D + SL + L F
Sbjct: 185 DLGDALGVGGHVTALRRTRVGRFELDQARSLDDL----AERPALSLSLDEACLLMFARRD 240
Query: 898 LSDLLSKRFLHGQNL 912
L+ + +G++L
Sbjct: 241 LTAAEASAAANGRSL 255
|
| >2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2 Length = 357 | Back alignment and structure |
|---|
Score = 270 bits (692), Expect = 4e-81
Identities = 71/264 (26%), Positives = 114/264 (43%), Gaps = 43/264 (16%)
Query: 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYL 720
I +GV+++DKP G +S+ +K +LN K G+ GTLDP TG+LP+ ATK
Sbjct: 64 IKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTIPMW 123
Query: 721 SEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSA 780
K Y ++HL D I ++ F G+I Q PP+ +A
Sbjct: 124 HIPPKEYVCLMHLHRDASEED------------------ILRVFKEFTGRIYQRPPLKAA 165
Query: 781 LKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIG 840
+ KR+LR KI+++ ++D + R+ C GTYIR L EDIG
Sbjct: 166 V-----------------KRRLRIRKIHELELLDKDGKDVLFRVKCQSGTYIRKLCEDIG 208
Query: 841 KMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIK----YSEYERISSL----IPIDILLSS 892
+ LG AH++ LRR + + ++ + E L P++ L
Sbjct: 209 EALGTSAHMQELRRTKSGCFEEKDAVYLQDLLDAYVFWKEDGDEEELRRVIKPMEYGLRH 268
Query: 893 FGIIYLSDLLSKRFLHGQNLFLSD 916
+ + D HG ++++
Sbjct: 269 LKKVVVKDSAVDAICHGADVYVRG 292
|
| >2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A Length = 334 | Back alignment and structure |
|---|
Score = 264 bits (676), Expect = 4e-79
Identities = 79/265 (29%), Positives = 117/265 (44%), Gaps = 44/265 (16%)
Query: 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYL 720
I +GV+ LDKP G +S+ + IK +LN +K G+ GTLDP +G+LP+ AT+ L
Sbjct: 44 IQYGVINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLPVALERATRVVQAL 103
Query: 721 SEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSA 780
A K Y A++HL GD+ + I ++ F G+I Q PP+ SA
Sbjct: 104 LPAGKEYVALMHLH-----GDVPE-------------DKIRAVMKEFEGEIIQRPPLRSA 145
Query: 781 LKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIG 840
+ KR+LR K+Y I I++ + R+ GTYIR L IG
Sbjct: 146 V-----------------KRRLRTRKVYYIEILEIDGRDVLFRVGVEAGTYIRSLIHHIG 188
Query: 841 KMLGCGAHLKYLRRIGIDKLTLDKCLN-----IDTIIKYSEYERISSL----IPIDILLS 891
LG GAH+ LRR D+ L +D + E + P++ +
Sbjct: 189 LALGVGAHMAELRRTRSGPFKEDETLVTLHDLVDYYHFWKEDGIEEYIRKAIQPMEKAVE 248
Query: 892 SFGIIYLSDLLSKRFLHGQNLFLSD 916
I++ D HG NL +
Sbjct: 249 HLPKIWIKDSAVAAVAHGANLTVPG 273
|
| >3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A Length = 400 | Back alignment and structure |
|---|
Score = 245 bits (628), Expect = 5e-72
Identities = 68/267 (25%), Positives = 108/267 (40%), Gaps = 45/267 (16%)
Query: 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYL 720
I GV+ LDKP SS+ + IK +L +K G++GTLDP TG L +C AT+
Sbjct: 57 ISSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQ 116
Query: 721 SEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSA 780
A K Y I+ L + + + L N G + Q PP+ SA
Sbjct: 117 QGAGKEYVCIVRLHDALKDEK-----------------DLGRSLENLTGALFQRPPLISA 159
Query: 781 LKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIP--YLTLRIHCSKGTYIRVLSED 838
+KR+LR IY+ +I++ C GTY+R L
Sbjct: 160 -----------------VKRQLRVRTIYESNLIEFDNKRNLGVFWASCEAGTYMRTLCVH 202
Query: 839 IGKMLGCGAHLKYLRRIGIDKLTL-DKCLNIDTIIKYSEYERISS--------LIPIDIL 889
+G +LG G H++ LRR+ L+ D + + ++ + + P++ L
Sbjct: 203 LGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWVYDNTRDESYLRSIIQPLETL 262
Query: 890 LSSFGIIYLSDLLSKRFLHGQNLFLSD 916
L + I + D +G L +
Sbjct: 263 LVGYKRIVVKDSAVNAVCYGAKLMIPG 289
|
| >1z9b_A Translation initiation factor IF-2; protein synthesis translation intiation IF2 FMet-tRNA structure; NMR {Geobacillus stearothermophilus} Length = 135 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 5e-51
Identities = 54/135 (40%), Positives = 85/135 (62%), Gaps = 2/135 (1%)
Query: 324 NEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLT 383
NE + G R + S + +++F I + ++K L +I+K DV GS E L
Sbjct: 1 NEFELGTRGSSRVDLQE--QRSVKTRVSLDDLFEQIKQGEMKELNLIVKADVQGSVEALV 58
Query: 384 ESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADASTRKLAQINNINI 443
+L+ + + V++++IH AVG I ESDI+LA AS AI+IGFNVR DA+ ++ A+ ++I
Sbjct: 59 AALQKIDVEGVRVKIIHAAVGAITESDISLATASNAIVIGFNVRPDANAKRAAESEKVDI 118
Query: 444 RYHNIIYNIIKEIKS 458
R H IIYN+I+EI++
Sbjct: 119 RLHRIIYNVIEEIEA 133
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* Length = 842 | Back alignment and structure |
|---|
Score = 156 bits (395), Expect = 7e-39
Identities = 60/165 (36%), Positives = 88/165 (53%), Gaps = 19/165 (11%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
++IAHVDHGK+TL D L++++G + AR D+ + E+ERGITI S S+ +
Sbjct: 23 SVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMS 82
Query: 986 R----------------INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFV 1029
IN+ID+PGH DF EV L + D L+++D +EG QT V
Sbjct: 83 DEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV 142
Query: 1030 TRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074
R+AL KP+VV+NK+DR+ + + DL+ T E
Sbjct: 143 LRQALGERIKPVVVINKVDRALLELQVSKE---DLYQTFARTVES 184
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* Length = 842 | Back alignment and structure |
|---|
Score = 83.5 bits (206), Expect = 3e-16
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 32/153 (20%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAG----------------GIT------------ 103
++++ HVDHGK++L D + + + S A GIT
Sbjct: 22 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEM 81
Query: 104 --QHIGAYNVVTNHGS--ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTRE 159
+ + T+ S I +D+PGH F++ +VTD ++VV +GV QT
Sbjct: 82 SDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET 141
Query: 160 AIAHAKISGVPLIVAINKIDKLDINLDRIKQDL 192
+ A + +V INK+D+ + L K+DL
Sbjct: 142 VLRQALGERIKPVVVINKVDRALLELQVSKEDL 174
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* Length = 842 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 1e-09
Identities = 41/203 (20%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 1117 NSNNPLQLQIISLEYSSYLGK-IGIGRILSGRIKSLQDVVIMN-----GPDDKPNKAKIN 1170
+ L L + + +S G+ GR+ +G +KS Q V I G D I
Sbjct: 373 DPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQ 432
Query: 1171 QIRVFKGLDRVLVNEALSGDIVLITGIEEICIGS-TICDPSKPNGL-PMLNIDEPTLTIN 1228
++ + G +++ +G+I+ + GI++ + + T+ + + M P + +
Sbjct: 433 RVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVA 492
Query: 1229 FMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTIL 1288
V N A K + + ++ D + + + + V+G GELHL I
Sbjct: 493 VEVKN---ANDLPKLVEGLKRLSKSDPCVLTYM--------SESGEHIVAGTGELHLEIC 541
Query: 1289 IENMRRE--GYELSVSRPRVIFK 1309
++++ + G L +S P V ++
Sbjct: 542 LQDLEHDHAGVPLKISPPVVAYR 564
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* Length = 600 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 1e-35
Identities = 87/298 (29%), Positives = 138/298 (46%), Gaps = 38/298 (12%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY---N 983
IIAHVDHGK+TL D LL +G + + +++D+ ++E+ERGIT+ + + Y +
Sbjct: 11 IIAHVDHGKSTLADRLLEYTGAISERE-KREQLLDTLDVERERGITVKMQAVRMFYKAKD 69
Query: 984 GTR--INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
G +++IDTPGH DF EV R L+ + LLLIDA +G QT KA++ I
Sbjct: 70 GNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVII 129
Query: 1042 VVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMI 1101
V+NKID +A + V ++ EE I SA K G I
Sbjct: 130 PVINKIDLPSADVDRVKKQIEEVLG--LDPEE-----AILASA---------KEGIG--I 171
Query: 1102 P-LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGP 1160
+ EAI+ +P K + PL+ I Y Y G + RI G +K +++M+
Sbjct: 172 EEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMS-- 229
Query: 1161 DDKPNKAK--INQIRVFKGLDRVLVNEALSGDI-VLITGIEEIC---IGSTICDPSKP 1212
+ + ++ ++ +GD+ + I+++ IG TI P
Sbjct: 230 ----TGKEYEVTEVGAQT-PKMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNP 282
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* Length = 600 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 2e-12
Identities = 75/296 (25%), Positives = 123/296 (41%), Gaps = 74/296 (25%)
Query: 74 IMGHVDHGKTSLLD-YIRKTNVVFS---------------EAGGITQHIGAYNVVTNHGS 117
I+ HVDHGK++L D + T + E G IT + V + +
Sbjct: 11 IIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERG-IT--VKMQAVRMFYKA 67
Query: 118 -------ITFLDTPGHEAFT-----AMRA-RGAKVTDIVVLVVAADDGVMPQTR----EA 160
+ +DTPGH F+ A+ A GA +L++ A G+ QT +A
Sbjct: 68 KDGNTYKLHLIDTPGHVDFSYEVSRALAACEGA------LLLIDASQGIEAQTVANFWKA 121
Query: 161 IAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220
+ + +I INKID ++DR+K+ + E+V+ + I SAK G+GI
Sbjct: 122 VEQ----DLVIIPVINKIDLPSADVDRVKKQI--EEVLGLD---PEEAILASAKEGIGIE 172
Query: 221 KLLENISLQAEILELKAPV---TTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVA 277
++LE I + + P P K +I +S D +G VA V I G ++ D
Sbjct: 173 EILEAI-----VNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGD---- 223
Query: 278 GASYGRIRSMLNENGKNILEAGPSIP--VEIQGLTKVPFSGEELFVILNEKKAREI 331
+I M + E G P + L+ +G+ ++ + K R+I
Sbjct: 224 -----KIMLMSTGKEYEVTEVGAQTPKMTKFDKLS----AGDVGYIAASIKDVRDI 270
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* Length = 599 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 1e-35
Identities = 84/298 (28%), Positives = 149/298 (50%), Gaps = 38/298 (12%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY---N 983
IIAH+DHGK+TL D +++ G + + A+++DS ++E+ERGITI +++ +++Y +
Sbjct: 9 IIAHIDHGKSTLSDRIIQICGGLSDRE-MEAQVLDSMDLERERGITIKAQSVTLDYKASD 67
Query: 984 GTR--INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
G +N IDTPGH DF EV R L+ + LL++DA +G QT A+++ + +
Sbjct: 68 GETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVV 127
Query: 1042 VVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMI 1101
V+NKID A PE V + D+ + + SA K G +
Sbjct: 128 PVLNKIDLPAADPERVAEEIEDIVG--IDATD-----AVRCSA---------KTGVG--V 169
Query: 1102 P-LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGP 1160
+ E +++ +P + + PLQ II + +YLG + + RI +G ++ V +M+
Sbjct: 170 QDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMS-- 227
Query: 1161 DDKPNKAK--INQIRVFKGLDRVLVNEALSGDI-VLITGIEEIC---IGSTICDPSKP 1212
+++ +F +V E G++ L+ I++I +G T+ P
Sbjct: 228 ----TGQTYNADRLGIFT-PKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNP 280
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* Length = 599 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 3e-12
Identities = 74/295 (25%), Positives = 126/295 (42%), Gaps = 72/295 (24%)
Query: 74 IMGHVDHGKTSLLD-YIRKTNVVFS-EAG-------------GITQHIGAYNVVTNHGS- 117
I+ H+DHGK++L D I+ + E GIT I A +V ++ +
Sbjct: 9 IIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGIT--IKAQSVTLDYKAS 66
Query: 118 ------ITFLDTPGHEAFT-----AMRA-RGAKVTDIVVLVVAADDGVMPQTR----EAI 161
+ F+DTPGH F+ ++ A GA +LVV A GV QT A+
Sbjct: 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGA------LLVVDAGQGVEAQTLANCYTAM 120
Query: 162 AHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221
+ ++ +NKID + +R+ +++ E ++ + A+ + SAKTGVG+
Sbjct: 121 EM----DLEVVPVLNKIDLPAADPERVAEEI--EDIVGID---ATDAVRCSAKTGVGVQD 171
Query: 222 LLENISLQAEILELKAPV---TTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAG 278
+LE + + ++ P P + +II+S D G V+ + I++GTLR D
Sbjct: 172 VLERL-----VRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGD----- 221
Query: 279 ASYGRIRSMLNENGKNILEAGPSIP--VEIQGLTKVPFSGEELFVILNEKKAREI 331
+++ M N G P V+ L GE +++ K
Sbjct: 222 ----KVKVMSTGQTYNADRLGIFTPKQVDRTELK----CGEVGWLVCAIKDIHGA 268
|
| >1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1 Length = 99 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 7e-32
Identities = 37/71 (52%), Positives = 55/71 (77%)
Query: 469 KENLLGLAEIRQVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKD 528
+E ++G AE+RQ V+KV IAGCY+ +G I RDSK+R++R +++ GE+DSLKR+KD
Sbjct: 2 EEKVIGQAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKD 61
Query: 529 NVKEVKAGFEC 539
+V+EV G+EC
Sbjct: 62 DVREVAQGYEC 72
|
| >2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus} Length = 120 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-31
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 19/120 (15%)
Query: 467 EKKENLLGLAEIRQVILVN---KVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSL 523
+G A I V K +A C + +G + R K +++RN +IW G L SL
Sbjct: 4 GSSGYPIGEASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSL 63
Query: 524 KRFKDNVKEVKAGFECERLSRIENQIQRDISE---IIAFDIQNPIINIITITEVKITLDY 580
K KD++ +K G +C ++ + + + +I ++ +V +
Sbjct: 64 KHHKDDISVIKTGMDCG--LSLDEE-KVEFKPGDQVICYEEN----------KVPTKTSW 110
|
| >1pa4_A Probable ribosome-binding factor A; structural genomics, distant homology, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Mycoplasma pneumoniae} SCOP: d.52.7.1 Length = 116 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 1e-31
Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNIL 600
+ R+EN I R I+ + +I N + +T VK++ D + ++ +N++ I ++
Sbjct: 5 KKERLENDIIRLINRTVIHEIYNETVKTGHVTHVKLSDDLLHVTVYLDCYNRE-QIDRVV 63
Query: 601 DNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAMMISKLIDGIK 648
++AK L+ L++ ++F D +I+NAM I +I+ +K
Sbjct: 64 GAFNQAKGVFSRVLAHNLYLAKAVQIHFVKDKAIDNAMRIESIINSLK 111
|
| >1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A Length = 128 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 5e-31
Identities = 35/110 (31%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
Query: 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFN--KDISIKN 598
R R+ +IQ++I+ I+ ++++P I ++T+++V+++ D SYAKIF T +++I+
Sbjct: 7 RSDRVAQEIQKEIAVILQREVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQ 66
Query: 599 ILDNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAMMISKLIDGIK 648
+ L KA YIR L K + + +P + F YD S+ M +S L+ +
Sbjct: 67 GMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDQSLVEGMRMSNLVTNVV 116
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Length = 482 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 6e-29
Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 25/221 (11%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAG----------GITQHIGAYNVVTNHGSITF 120
+ I GH+DHGKT+L + + + S + GIT IG + IT
Sbjct: 21 NLGIFGHIDHGKTTLSKVLTE---IASTSAHDKLPESQKRGITIDIGFSAFKLENYRITL 77
Query: 121 LDTPGHEAFT-AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKID 179
+D PGH A+ + A + D+ ++VV A +G QT E + +P+IV I K D
Sbjct: 78 VDAPGHADLIRAVVS-AADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSD 136
Query: 180 KLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPV 239
+ + ++ + S I ISAKTG G+++L I E+
Sbjct: 137 NAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNT 196
Query: 240 TTPAKGVI-----IESRLDKGKGPVATVLIQSGTLRCSDIV 275
+ K + I KG G V T I G ++ D +
Sbjct: 197 ESYFKMPLDHAFPI-----KGAGTVVTGTINKGIVKVGDEL 232
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Length = 482 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 4e-25
Identities = 69/299 (23%), Positives = 112/299 (37%), Gaps = 57/299 (19%)
Query: 928 IAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRI 987
H+DHGKTTL L + + D ++RGITI + + RI
Sbjct: 25 FGHIDHGKTTLSKVL---TEIASTSA------HDKLPESQKRGITIDIGFSAFKLENYRI 75
Query: 988 NIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
++D PGHAD I ++V D L+++DA EGP QT I
Sbjct: 76 TLVDAPGHADL------IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPII 129
Query: 1042 VVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMI 1101
VV+ K D A E + + L +T + +I SA G+ +
Sbjct: 130 VVITKSDN--AGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDE--------- 178
Query: 1102 PLFEAILKYV--PVHKDNSNNPLQLQI-----ISLEYSSYLGKIGIGRILSGRIKSLQDV 1154
L I+ + N+ + ++ + I G + G I G +K ++
Sbjct: 179 -LKNLIITTLNNAEIIRNTESYFKMPLDHAFPI-----KGAGTVVTGTINKGIVKVGDEL 232
Query: 1155 VIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--LITGI--EEICIGSTICDP 1209
++ K+ I+ F + V EA +GD V I G+ ++I G +
Sbjct: 233 KVLPINM----STKVRSIQYF----KESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSK 283
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* Length = 665 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 9e-28
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYN 983
A++ H GKTTL + LL ++G + + D K T+ + + +
Sbjct: 13 ALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR 72
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
G R+ ++D PG+ DF GE+ L D L+ + A G T A +LG +VV
Sbjct: 73 GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVV 132
Query: 1044 VNKIDR 1049
V K+D+
Sbjct: 133 VTKLDK 138
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* Length = 665 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 6e-11
Identities = 42/224 (18%), Positives = 81/224 (36%), Gaps = 51/224 (22%)
Query: 1102 PLFEAILKYVPVHKDNSNN-P---LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 1157
PL E IL+ +P + + P ++ ++G++ R+ GR+K +
Sbjct: 263 PLLELILEALPSPTERFGDGPPLAKVFKVQV---DPFMGQVAYLRLYRGRLKP--GDSLQ 317
Query: 1158 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPM 1217
+ + + ++ + V G D + V EA +G ++ + E + G + KP +
Sbjct: 318 S----EAGQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEV 373
Query: 1218 LNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGL----------RVTQ 1267
P + + P K R D + L ++ +
Sbjct: 374 PFARLPDPNVPVAL--HP--------------KGRTDEA-RLGEALRKLLEEDPSLKLER 416
Query: 1268 NKHDDSIYE-----VSGRGELHLTILIENMRREGYELSVSRPRV 1306
+ E + G GELHL E ++ G E+ S P+V
Sbjct: 417 QE------ETGELLLWGHGELHLATAKERLQDYGVEVEFSVPKV 454
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* Length = 665 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 1e-07
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 22/127 (17%)
Query: 74 IMGHVDHGKTSL----LDY---IRKTNVVFSEAG-------------GITQHIGAYNVVT 113
++GH GKT+L L + V E G T G ++
Sbjct: 14 LVGHAGSGKTTLTEALLYKTGAKERRGRV--EEGTTTTDYTPEAKLHRTTVRTGVAPLLF 71
Query: 114 NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIV 173
+ LD PG+ F + D ++ V+A+ GV T A A+ G+P +V
Sbjct: 72 RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMV 131
Query: 174 AINKIDK 180
+ K+DK
Sbjct: 132 VVTKLDK 138
|
| >2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima} Length = 106 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 1e-26
Identities = 23/100 (23%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 541 RLSRIENQIQRDISEIIAFDIQNPIIN--IITITEVKITLDYSYAKIFFTTFNKDISIKN 598
R + +E++IQ+ + E + +++P + +T + V+++ D YA ++ + K
Sbjct: 7 RKAMLESEIQKLLMEAL-QQLRDPRLKKDFVTFSRVELSKDKRYADVYVSFLGTPEERKE 65
Query: 599 ILDNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAM 638
++ L++AK + R ++K L ++ P + F+ D IE ++
Sbjct: 66 TVEILNRAKGFFRTFIAKNLRLYVAPEIRFYEDKGIEASV 105
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* Length = 529 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 3e-26
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 32/168 (19%)
Query: 926 AIIAHVDHGKTTLIDHLL------RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCS 979
AII+H D GKTT+ + +L + +GT + + D E+EK+RGI+I +
Sbjct: 17 AIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQ 76
Query: 980 IEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
Y+ +N++DTPGH DF + R L+ VD L++IDA +G +TR KL +
Sbjct: 77 FPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR-------KL-ME 128
Query: 1040 -------PIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079
PI+ +NK+DR P +L D++ E +L
Sbjct: 129 VTRLRDTPILTFMNKLDRDIRDP-------MELLDEV---ENELKIGC 166
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* Length = 529 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINK 177
+ LDTPGHE F+ R D ++V+ A GV +TR+ + ++ P++ +NK
Sbjct: 84 VNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNK 143
Query: 178 IDK-----LDINLDRIKQDL 192
+D+ +++ LD ++ +L
Sbjct: 144 LDRDIRDPMEL-LDEVENEL 162
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} Length = 528 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 4e-26
Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 32/168 (19%)
Query: 926 AIIAHVDHGKTTLIDHLL------RQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCS 979
AII+H D GKTTL + LL + +GT + + D E+EK+RGI++ +
Sbjct: 17 AIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQ 76
Query: 980 IEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
Y IN++DTPGHADF + R L+ VD+ L++IDA +G P+T KL +
Sbjct: 77 FPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-------KL-ME 128
Query: 1040 -------PIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079
PI+ +NK+DR +L D++ E L
Sbjct: 129 VCRLRHTPIMTFINKMDRDTRPS-------IELLDEI---ESILRIHC 166
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} Length = 528 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-05
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINK 177
I LDTPGH FT R D ++V+ A GV P+T + + ++ P++ INK
Sbjct: 84 INLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINK 143
Query: 178 IDK-----LDINLDRIKQDL 192
+D+ +++ LD I+ L
Sbjct: 144 MDRDTRPSIEL-LDEIESIL 162
|
| >2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1 Length = 129 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 6e-25
Identities = 14/111 (12%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
Query: 541 RLSRIENQIQRDISEIIAFDIQNPIIN--IITITEVKITLDYSYAKIFFTTFNKDISIKN 598
RL + + + +++++ + + + +++V +T D+S + ++ T +
Sbjct: 14 RLRALNGLLYKALTDLLCTPEVSQELYDLNVELSKVSLTPDFSACRAYWKTTLSAEQNAH 73
Query: 599 ILDNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAMMISKLIDGIKY 649
+ L ++ ++R L + + +P + F D + +L+
Sbjct: 74 MEAVLQRSAAHMRHLLMSQQTLRNVPPIVFVQDKGNAALAELDQLLAVADS 124
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} Length = 370 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 6e-24
Identities = 46/259 (17%), Positives = 85/259 (32%), Gaps = 59/259 (22%)
Query: 38 GHVAHASKLNDPESFLLNEYNKNITAESLVRA--PIVTI--MGHVDHGKTSLLDYIRKTN 93
H H S LV + + +G G+TSL + K
Sbjct: 5 HHHHHHSS-------------------GLVPRGSHMANVAIIGTEKSGRTSLAANLGK-- 43
Query: 94 VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT-AMRARGAKVTDIVVLVVAADDG 152
G + I YN ++ F+D + ++ ++DI VL + G
Sbjct: 44 ------KGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLIT-ALNISDIAVLCIPPQ-G 95
Query: 153 VMPQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIPEEYG---GASPF 208
+ T E I + G I+A+ + D ++ D + ++ G
Sbjct: 96 LDAHTGECIIALDLLGFKHGIIALTRSDSTHMHA----IDELKAKLKVITSGTVLQDWEC 151
Query: 209 ISISAKTGV-----GINKLLENISLQAEILELKAPVTTPAKGVI---IESRLD----KGK 256
IS++ G+++L I+ AE +++A I+ GK
Sbjct: 152 ISLNTNKSAKNPFEGVDELKARINEVAE--KIEAENAELNSLPARIFID---HAFNVTGK 206
Query: 257 GPVATVLIQSGTLRCSDIV 275
G V +++ G + D
Sbjct: 207 GCVVLGVVKQGISKDKDKT 225
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} Length = 370 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 2e-21
Identities = 46/303 (15%), Positives = 94/303 (31%), Gaps = 70/303 (23%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AII G+T+L ++G + + + G
Sbjct: 25 AIIGTEKSGRTSLA------------------------ANLGKKGTSSDITMYNNDKEGR 60
Query: 986 RINIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
+ +D + + S++ D +L I +G T LGFK
Sbjct: 61 NMVFVDAHSYPKT------LKSLITALNISDIAVLCIPP-QGLDAHTGECIIALDLLGFK 113
Query: 1040 PIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQG 1098
++ + D + + L T Q D+ I + N +
Sbjct: 114 HGIIALTRSDS--THMHAIDELKAKLKVITSGTVLQ-DWECISLNTNKSAKNPFEGVDE- 169
Query: 1099 NMIPLFEAILKYVPV-HKDNSNNPLQLQI-----ISLEYSSYLGK--IGIGRILSGRIKS 1150
+ + + + + + ++ P ++ I ++ GK + +G + G K
Sbjct: 170 -LKARINEVAEKIEAENAELNSLPARIFIDHAFNVT-------GKGCVVLGVVKQGISKD 221
Query: 1151 LQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV--LITGI--EEICIGSTI 1206
I P D+ +I I+ V ++ A +G V + + ++I G I
Sbjct: 222 KDKTKIF--PLDR--DIEIRSIQSH----DVDIDSAPAGTRVGMRLKNVQAKDIERGFII 273
Query: 1207 CDP 1209
D
Sbjct: 274 SDK 276
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} Length = 693 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 8e-24
Identities = 63/150 (42%), Positives = 84/150 (56%), Gaps = 11/150 (7%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNI-----NARIMDSNEIEKERGITIFSKNCSIE 981
I+AH+D GKTT + +L +G + I A MD E E++RGITI S +
Sbjct: 15 IMAHIDAGKTTTTERILYYTG---RIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA 71
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
+ G R+NIIDTPGH DF EVER L ++D + ++DA G PQT V R+A G I
Sbjct: 72 WEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRI 131
Query: 1042 VVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071
V VNK+D+ A E+ V L D+L A
Sbjct: 132 VFVNKMDKLGANFEYSVS---TLHDRLQAN 158
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} Length = 693 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 6e-05
Identities = 44/192 (22%), Positives = 74/192 (38%), Gaps = 45/192 (23%)
Query: 1134 YLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL 1193
Y+GK+ R+ SG + S V N K + ++ ++ R ++ SGDI
Sbjct: 321 YVGKLTFFRVYSGTMTSGSYV--KNSTKGK--RERVGRLLQMHANSRQEIDTVYSGDIAA 376
Query: 1194 ITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRL 1253
G+++ G T+C L + EP I+ V P K++
Sbjct: 377 AVGLKDTGTGDTLCGEKNDIILESMEFPEPV--IHLSV--EP--------------KSKA 418
Query: 1254 DHEIKNNIGL----------RVTQNKHDDSIYE-----VSGRGELHLTILIENMRRE-GY 1297
D + K L ++ E + G GELHL IL++ M++E
Sbjct: 419 DQD-KMTQALVKLQEEDPTFHAHTDE------ETGQVIIGGMGELHLDILVDRMKKEFNV 471
Query: 1298 ELSVSRPRVIFK 1309
E +V P V ++
Sbjct: 472 ECNVGAPMVSYR 483
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} Length = 693 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 6e-04
Identities = 30/64 (46%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 122 DTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQT----REAIAHAKISGVPLIVAINK 177
DTPGH FT R +V D V V+ A GV PQT R+A + GVP IV +NK
Sbjct: 81 DTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTY----GVPRIVFVNK 136
Query: 178 IDKL 181
+DKL
Sbjct: 137 MDKL 140
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... Length = 691 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 9e-24
Identities = 55/150 (36%), Positives = 81/150 (54%), Gaps = 11/150 (7%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNIN-----ARIMDSNEIEKERGITIFSKNCSIE 981
I AH+D GKTT + +L +G + I A MD E E+ERGITI + +
Sbjct: 17 IAAHIDAGKTTTTERILYYTG---RIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
+ RINIIDTPGH DF EVER + ++D +++ D+ +G PQ+ V R+A K I
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 1042 VVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071
NK+D++ A V+ + ++L A
Sbjct: 134 AFANKMDKTGADLWLVIR---TMQERLGAR 160
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... Length = 691 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 6e-04
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 122 DTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQT----REAIAHAKISGVPLIVAINK 177
DTPGH FT R +V D ++V + GV PQ+ R+A + VP I NK
Sbjct: 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY----KVPRIAFANK 138
Query: 178 IDKL 181
+DK
Sbjct: 139 MDKT 142
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H Length = 704 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-23
Identities = 62/157 (39%), Positives = 81/157 (51%), Gaps = 18/157 (11%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNIN-----ARIMDSNEIEKERGITIFS------ 975
I AH+D GKTT + +L +G N I A MD E E+ERGITI S
Sbjct: 15 ISAHIDAGKTTTTERILFYTG---VNHKIGEVHDGAATMDWMEQEQERGITITSAATTAF 71
Query: 976 -KNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKAL 1034
+ +Y RINIIDTPGH DF EVER + ++D +++ AV G PQ+ V R+A
Sbjct: 72 WSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQAN 131
Query: 1035 KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071
K I VNK+DR A VV+ + +L A
Sbjct: 132 KYKVPRIAFVNKMDRMGANFLKVVN---QIKTRLGAN 165
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H Length = 704 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 45/192 (23%)
Query: 1134 YLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL 1193
++G + R+ SG + S V +N + + +I R + E +GDI
Sbjct: 329 FVGNLTFFRVYSGVVNSGDTV--LNSVKAA--RERFGRIVQMHANKREEIKEVRAGDIAA 384
Query: 1194 ITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRL 1253
G++++ G T+CDP P L + EP I+ V P K +
Sbjct: 385 AIGLKDVTTGDTLCDPDAPIILERMEFPEPV--ISIAV--EP--------------KTKA 426
Query: 1254 DHEIKNNIGL----------RVTQNKHDDSIYE-----VSGRGELHLTILIENMRRE-GY 1297
D E K + L RV ++ E ++G GELHL I+++ M+RE
Sbjct: 427 DQE-KMGLALGRLAKEDPSFRVWTDE------ESNQTIIAGMGELHLDIIVDRMKREFNV 479
Query: 1298 ELSVSRPRVIFK 1309
E +V +P+V ++
Sbjct: 480 EANVGKPQVAYR 491
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H Length = 704 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 6e-04
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 122 DTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQT----REAIAHAKISGVPLIVAINK 177
DTPGH FT R +V D V+V A GV PQ+ R+A + VP I +NK
Sbjct: 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY----KVPRIAFVNK 143
Query: 178 IDKL 181
+D++
Sbjct: 144 MDRM 147
|
| >2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain; 1.84A {Thermus thermophilus} SCOP: d.52.7.1 PDB: 2r1c_A Length = 95 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 1e-21
Identities = 20/93 (21%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNIL 600
+ +E Q++R ++E I +++P + ++T+ V+++ D S ++ F ++ + L
Sbjct: 4 GKAHLEAQLKRALAEEIQ-ALEDPRLFLLTVEAVRLSKDGSVLSVYVEAFREE---EGAL 59
Query: 601 DNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNS 633
LS+A+ + L++++ + LP L F +
Sbjct: 60 RALSRAERRLVAALARRVRMRRLPRLEFLPWRA 92
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A Length = 467 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 2e-21
Identities = 72/323 (22%), Positives = 117/323 (36%), Gaps = 47/323 (14%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSG-----TFRKNQNINAR----------IMDSNEIEKERG 970
I HVD GK+TL ++L +G T K + +DS E+E+G
Sbjct: 47 VFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKG 106
Query: 971 ITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-------PM 1023
T+ E R +++D PGH + + S D +L+I A G
Sbjct: 107 KTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERG 166
Query: 1024 PQTRFVTRKALKLGFK-PIVVVNKIDR-----SNARPEWVVDATFDLFDKLCATEEQLDF 1077
QTR A G +VV+NK+D S R + VD ++ + D
Sbjct: 167 GQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDV 226
Query: 1078 PVIYTSALHGYANENSKARQGNM-----IPLFEAILKYVPVHKDNSNNPLQLQIISLEYS 1132
+ SA G N + L E + + + N P + I S Y
Sbjct: 227 KYMPVSAYTG-QNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERK-VNAPFIMPIASK-YK 283
Query: 1133 SYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIV 1192
LG I G+I +G IK +V++M P + ++ ++ ++ GD V
Sbjct: 284 D-LGTILEGKIEAGSIKKNSNVLVM------PINQTL-EVTAIYDEADEEISSSICGDQV 335
Query: 1193 LIT---GIEEICIGSTICDPSKP 1212
+ ++ G + P
Sbjct: 336 RLRVRGDDSDVQTGYVLTSTKNP 358
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A Length = 467 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 4e-12
Identities = 61/291 (20%), Positives = 106/291 (36%), Gaps = 71/291 (24%)
Query: 74 IMGHVDHGKTSL---LDY---------IRKTNVVFSEAG-------------------GI 102
+GHVD GK++L + + + K EAG G
Sbjct: 48 FIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGK 107
Query: 103 TQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVM-------P 155
T +G T H + LD PGH+ + GA DI VLV++A G
Sbjct: 108 TVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGG 167
Query: 156 QTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIP--EEYGG-----ASP 207
QTRE A+ G+ L+V INK+D+ + + +++ G
Sbjct: 168 QTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVK 227
Query: 208 FISISAKTGVGINK--------------LLENI-SLQAEILELKAPVTTPAKGVIIESRL 252
++ +SA TG + LLE + S+ ++ AP P
Sbjct: 228 YMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIASKY----- 282
Query: 253 DKGKGPVATVLIQSGTLRCSDIVV---AGASYGRIRSMLNENGKNILEAGP 300
K G + I++G+++ + V+ + + ++ +E + I +
Sbjct: 283 -KDLGTILEGKIEAGSIKKNSNVLVMPINQT-LEVTAIYDEADEEISSSIC 331
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* Length = 435 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 2e-21
Identities = 83/334 (24%), Positives = 131/334 (39%), Gaps = 71/334 (21%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSG-----TFRKNQN----------INARIMDSNEIEKERG 970
+I HVDHGK+TL+ LL G T ++ + A ++D + E+ERG
Sbjct: 10 IVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERG 69
Query: 971 ITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEG--- 1021
+TI E IID PGH DF + +M+ D +L++ A +G
Sbjct: 70 VTINLTFMRFETKKYFFTIIDAPGHRDF------VKNMITGASQADAAILVVSAKKGEYE 123
Query: 1022 ----PMPQTRFVTRKALKLGFK-PIVVVNKIDR-----SNARPEWVVDATFDLFDKLCAT 1071
QTR A +G IV VNK+D R + +VD
Sbjct: 124 AGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFN 183
Query: 1072 EEQLDF-PVIYTSALHGYANENSKARQGNMIP------LFEAILKYVPVHKDNSNNPLQL 1124
++ F PV A G +N + NM L E + + K + PL++
Sbjct: 184 TNKVRFVPV---VAPSG---DNITHKSENM-KWYNGPTLEEYLDQLELPPKP-VDKPLRI 235
Query: 1125 QIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNK--AKINQIRVFKGLDRVL 1182
I + S +G + +GR+ SG +K +V M P ++ I
Sbjct: 236 PIQDVYSISGVGTVPVGRVESGVLKVGDKIVFM------PAGKVGEVRSIE----THHTK 285
Query: 1183 VNEALSGDIVLIT--GIE--EICIGSTICDPSKP 1212
+++A GD + G+E +I G + P+ P
Sbjct: 286 MDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNP 319
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* Length = 435 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 9e-11
Identities = 67/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 72 VTIMGHVDHGKTSL---LDY---------IRKTNVVFSEAG------------------- 100
+ ++GHVDHGK++L L +++ + G
Sbjct: 9 LIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERER 68
Query: 101 GITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG-------V 153
G+T ++ T T +D PGH F GA D +LVV+A G V
Sbjct: 69 GVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSV 128
Query: 154 MPQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIP--EEYG---GASP 207
QTRE I AK G+ LIVA+NK+D + D + I +QV YG
Sbjct: 129 EGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVR 188
Query: 208 FISISAKTGVGINKLLENIS-------LQA--EILELKAPVTTPAKGVIIESRLDKGKGP 258
F+ + A +G I EN+ + ++ PV P + I + G G
Sbjct: 189 FVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSISGVGT 248
Query: 259 VATVLIQSGTLRCSDIVV 276
V ++SG L+ D +V
Sbjct: 249 VPVGRVESGVLKVGDKIV 266
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 434 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 4e-20
Identities = 76/328 (23%), Positives = 132/328 (40%), Gaps = 60/328 (18%)
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQ----------------NIN-ARIMDSNE 964
+++ +VD GK+TLI LL S ++ +++ A ++D +
Sbjct: 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQ 83
Query: 965 IEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP 1024
E+E+GITI + I DTPGH + + S D ++L+DA G
Sbjct: 84 AEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT 143
Query: 1025 QTR---FVTRKALKLGFKPIVV-VNKIDR---SNARPEWVVDATFDLFDKLCATEEQLDF 1077
QTR ++ +L LG K IVV +NK+D E + + + + F
Sbjct: 144 QTRRHSYIA--SL-LGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAF 200
Query: 1078 -PVIYTSALHGYANENSKARQGNM-----IPLFEAILKYVPVHKDNSNNPLQLQI----- 1126
P+ SAL G +N + L E IL+ V + D + L+ +
Sbjct: 201 VPM---SALKG---DNVVNKSERSPWYAGQSLME-ILETVEIASDRNYTDLRFPVQYVNR 253
Query: 1127 ISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEA 1186
+L + + G + SG + ++V++ P K +++ I F+G + +A
Sbjct: 254 PNLNFRGFA-----GTLASGIVHKGDEIVVL--PSGK--SSRVKSIVTFEG----ELEQA 300
Query: 1187 LSGDIVLITGIEEICI--GSTICDPSKP 1212
G V +T +EI I G +
Sbjct: 301 GPGQAVTLTMEDEIDISRGDLLVHADNV 328
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 434 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 6e-13
Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 46/179 (25%)
Query: 41 AHASKLNDPESFLLNEYNKNITAESLVRAPIVTIMGHVDHGKTSL--------------- 85
+H S L + + Y + ++R +T G+VD GK++L
Sbjct: 2 SHQSDLISED---ILAYLGQHERKEMLR--FLTC-GNVDDGKSTLIGRLLHDSKMIYEDH 55
Query: 86 LDYIRKTNVVFSEAG------------------GITQHIGAYNVVTNHGSITFLDTPGHE 127
L+ I + + G GIT + T DTPGHE
Sbjct: 56 LEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHE 115
Query: 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKIS---GVP-LIVAINKIDKLD 182
+T A GA D+ +++V A GV QTR H+ I+ G+ ++VAINK+D
Sbjct: 116 QYTRNMATGASTCDLAIILVDARYGVQTQTRR---HSYIASLLGIKHIVVAINKMDLNG 171
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* Length = 410 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 5e-20
Identities = 70/247 (28%), Positives = 100/247 (40%), Gaps = 52/247 (21%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVV-FSE--AGGITQHIG----------------AYNV 111
I + GHVDHGKT+L + SE GIT IG V
Sbjct: 13 IGMV-GHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPV 71
Query: 112 VTNHGS-------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAH 163
G ++F+D PGHEA GA + D +LV+AA++ PQTRE +
Sbjct: 72 CPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA 131
Query: 164 AKISGVP-LIVAINKIDKLDINLDRIKQDLISEQV------IPEEYGGASPFISISAKTG 216
+I G +I+A NKI+ +D K+ + E I +P I ISA G
Sbjct: 132 LQIIGQKNIIIAQNKIELVD------KEKAL-ENYRQIKEFIEGTVAENAPIIPISALHG 184
Query: 217 VGINKLLENISLQAEILELKAPVTTPAKGVIIES--------RLDKGKGPVATVLIQSGT 268
I+ L++ I + I K P K +++ S +K G V I G
Sbjct: 185 ANIDVLVKAI--EDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGK 242
Query: 269 LRCSDIV 275
L+ D +
Sbjct: 243 LKVGDEI 249
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* Length = 410 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 3e-15
Identities = 81/353 (22%), Positives = 126/353 (35%), Gaps = 113/353 (32%)
Query: 928 IAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITI-------------- 973
+ HVDHGKTTL L +G S E RGITI
Sbjct: 16 VGHVDHGKTTLTKAL---TGV----WTDTH----SE--ELRRGITIKIGFADAEIRRCPN 62
Query: 974 --------FSKNCSIEYNGTR-INIIDTPGHADFGGEVERILSMV------DNVLLLIDA 1018
C E R ++ ID PGH + +M+ D +L+I A
Sbjct: 63 CGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEAL------MTTMLAGASLMDGAILVIAA 116
Query: 1019 VEG-PMPQTRFVTRKALKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQL- 1075
E P PQTR +G K I++ NKI+ +VD +K Q+
Sbjct: 117 NEPCPRPQTREHLMALQIIGQKNIIIAQNKIE--------LVDK-----EKALENYRQIK 163
Query: 1076 ---------DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQI 1126
+ P+I SALHG N+ L +AI ++P K + N P ++ +
Sbjct: 164 EFIEGTVAENAPIIPISALHGA----------NIDVLVKAIEDFIPTPKRDPNKPPKMLV 213
Query: 1127 ISL--------EYSSYLGKIGIGRILSGRIKSLQDVVI--------MNGPDDKPNKAKIN 1170
+ +G + G I+ G++K ++ I +P +I
Sbjct: 214 LRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIV 273
Query: 1171 QIRVFKGLDRVLVNEALSGDIV-LITGI------EEICIGSTICDPSKPNGLP 1216
++ V EA G +V + T + ++ G+ + KP LP
Sbjct: 274 SLQAG----GQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVG---KPGKLP 319
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 408 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 8e-20
Identities = 64/247 (25%), Positives = 94/247 (38%), Gaps = 52/247 (21%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVV-FSE--AGGITQHIG----------------AYNV 111
I + GHVDHGKTSL + SE GI+ +G
Sbjct: 11 IGMV-GHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPR 69
Query: 112 VTNHGSIT-------FLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAH 163
N + T F+D+PGHE A GA + D +LV+AA++ PQT+E +
Sbjct: 70 CPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA 129
Query: 164 AKISGVP-LIVAINKIDKLDINLDRIKQDLISEQV------IPEEYGGASPFISISAKTG 216
+I G+ +I+ NKID +D ++ E + +P I ISA
Sbjct: 130 LEILGIDKIIIVQNKIDLVD------EKQAE-ENYEQIKEFVKGTIAENAPIIPISAHHE 182
Query: 217 VGINKLLENISLQAEILELKAPVTTPAKGVIIES--------RLDKGKGPVATVLIQSGT 268
I+ LL+ I Q I K + + S + KG V I G
Sbjct: 183 ANIDVLLKAI--QDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGV 240
Query: 269 LRCSDIV 275
+ D +
Sbjct: 241 FKVGDEI 247
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 408 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 2e-16
Identities = 76/353 (21%), Positives = 119/353 (33%), Gaps = 113/353 (32%)
Query: 928 IAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITI-------------- 973
+ HVDHGKT+L L +G S E RGI+I
Sbjct: 14 VGHVDHGKTSLTKAL---TGV----WTDRH----SE--ELRRGISIRLGYADCEIRKCPQ 60
Query: 974 --------FSKNCSIEYNGTR-INIIDTPGHADFGGEVERILSMV------DNVLLLIDA 1018
NC E R ++ +D+PGH + +M+ D +L+I A
Sbjct: 61 CGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETL------MATMLSGASLMDGAILVIAA 114
Query: 1019 VEG-PMPQTRFVTRKALKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQL- 1075
E P PQT+ LG I++V NKID +VD + EQ+
Sbjct: 115 NEPCPQPQTKEHLMALEILGIDKIIIVQNKID--------LVDE-----KQAEENYEQIK 161
Query: 1076 ---------DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQI 1126
+ P+I SA H N+ L +AI ++P K + + ++ +
Sbjct: 162 EFVKGTIAENAPIIPISAHHEA----------NIDVLLKAIQDFIPTPKRDPDATPRMYV 211
Query: 1127 ISL--------EYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDK--------PNKAKIN 1170
E G + G I+ G K ++ I G P KI
Sbjct: 212 ARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIV 271
Query: 1171 QIRVFKGLDRVLVNEALSGDIV-----LITGI--EEICIGSTICDPSKPNGLP 1216
+ ++ +A G ++ L + + GS + P LP
Sbjct: 272 SLAAG----NTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVG---LPGTLP 317
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 592 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 4e-19
Identities = 71/336 (21%), Positives = 130/336 (38%), Gaps = 74/336 (22%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSG-----TFRKN----QNIN------ARIMDSNEIEKERG 970
+ HVD GK+T++ ++ + G + +K N A ++D+ E E+ RG
Sbjct: 181 VVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARG 240
Query: 971 ITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPM- 1023
+T+ + + E + I D PGH DF I M+ D +L++D+ +
Sbjct: 241 VTMDVASTTFESDKKIYEIGDAPGHRDF------ISGMIAGASSADFAVLVVDSSQNNFE 294
Query: 1024 ------PQTRFVTRKALKLGFK-PIVVVNKIDR---SNARPEWVVDATFDLFDKLCA-TE 1072
QTR LG +V VNK+D S R + + + D K+
Sbjct: 295 RGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKT 354
Query: 1073 EQLDF-PVIYTSALHGYANENSKARQGNMI-------PLFEAILKYVPVHKDNSNNPLQL 1124
+ F P+ SA+ G N + + + L A+ + VP K PL+L
Sbjct: 355 SNVHFVPI---SAISG---TNLIQKDSSDLYKWYKGPTLLSALDQLVPPEKP-YRKPLRL 407
Query: 1125 QIISLEYSSYLGKIGI--GRILSGRIKSLQDVVIMNGPDDKPNK--AKINQIRVFKGLDR 1180
I + Y S + GR+ +G ++ Q + + ++ A + +
Sbjct: 408 SIDDV-YRS--PRSVTVTGRVEAGNVQVNQVLYDV------SSQEDAYVKNVIRN---SD 455
Query: 1181 VLVNEALSGDIVLIT----GIEEICIGSTICDPSKP 1212
A++GD V + + ++ G + + P
Sbjct: 456 PSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYENP 491
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 592 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 7e-09
Identities = 40/202 (19%), Positives = 73/202 (36%), Gaps = 57/202 (28%)
Query: 74 IMGHVDHGKTSL---LDY---------IRKTNVVFSEAG-------------------GI 102
+ GHVD GK+++ + + ++K + + +G G+
Sbjct: 182 VTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGV 241
Query: 103 TQHIGAYNVVTNHGSITFLDTPGHEAF-----TAMRARGAKVTDIVVLVVAADDGVM--- 154
T + + ++ D PGH F GA D VLVV +
Sbjct: 242 TMDVASTTFESDKKIYEIGDAPGHRDFISGMIA-----GASSADFAVLVVDSSQNNFERG 296
Query: 155 ----PQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGAS--- 206
QTRE + G+ ++V++NK+D + + DR ++ I V
Sbjct: 297 FLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQE--IKNIVSDFLIKMVGFKT 354
Query: 207 ---PFISISAKTGVGINKLLEN 225
F+ ISA +G + + +
Sbjct: 355 SNVHFVPISAISGTNLIQKDSS 376
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} Length = 611 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 5e-19
Identities = 65/342 (19%), Positives = 115/342 (33%), Gaps = 73/342 (21%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSG-----TFRKN----QNIN------ARIMDSNEIEKERG 970
++ HVD GK+TL+ LL RK + + A IMD E+ERG
Sbjct: 171 VVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERG 230
Query: 971 ITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPM- 1023
+T+ + I+D PGH DF + + + D +L +D
Sbjct: 231 VTVSICTSHFSTHRANFTIVDAPGHRDF------VPNAIMGISQADMAILCVDCSTNAFE 284
Query: 1024 ------PQTRFVTRKALKLGFKP-IVVVNKIDR---SNARPEWVVDATFDLFDKLCATEE 1073
QT+ A LG I+ +NK+D S R E + + E+
Sbjct: 285 SGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFED 344
Query: 1074 QLDF-PVIYTSALHGYANENSKARQGNMIP------LFEAI-----LKYVPVHKDNSNNP 1121
+++ P+ S G + L + N ++P
Sbjct: 345 NINWVPI---SGFSG-EGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDP 400
Query: 1122 LQLQIISLEYSSYLGKIG---IGRILSGRIKSLQDVVIMNGPDDKPNK--AKINQIRVFK 1176
++ + S G++ SG I+ + + I P++ +++I+V
Sbjct: 401 FLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIY------PSEQSCIVDKIQVGS 454
Query: 1177 GLDRVL----VNEALSGDIVLIT----GIEEICIGSTICDPS 1210
+ + A+ GD V + E+I G
Sbjct: 455 QQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVD 496
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} Length = 611 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-09
Identities = 55/273 (20%), Positives = 99/273 (36%), Gaps = 77/273 (28%)
Query: 74 IMGHVDHGKTSL---LDY---------IRKTNVVFSEAG-------------------GI 102
++GHVD GK++L L Y +RK G G+
Sbjct: 172 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV 231
Query: 103 TQHIGAYNVVTNHGSITFLDTPGHEAF-----TAMRARGAKVTDIVVLVVAADDGVM--- 154
T I + T+ + T +D PGH F G D+ +L V
Sbjct: 232 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIM-----GISQADMAILCVDCSTNAFESG 286
Query: 155 ----PQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIP--EEYG---G 204
QT+E + A G+ LI+A+NK+D +D + R ++ I +++P + G
Sbjct: 287 FDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEE--IKSKLLPYLVDIGFFED 344
Query: 205 ASPFISISAKTGVGINKL------------------LENISLQAEILELKAPVTTPAKGV 246
++ IS +G G+ K+ LEN + + P
Sbjct: 345 NINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFS 404
Query: 247 IIESRLDKGKGPVATVL---IQSGTLRCSDIVV 276
++E K ++ ++SG+++ + +
Sbjct: 405 VLEIIPSKKTSNDLALVSGKLESGSIQPGESLT 437
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 93.0 bits (230), Expect = 6e-19
Identities = 101/635 (15%), Positives = 196/635 (30%), Gaps = 190/635 (29%)
Query: 280 SYGRIRSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKARE-----IGLF 334
Y I S+ + + + ++Q + K S EE+ I+ K A
Sbjct: 17 QYKDILSVFEDAFVDNFDCK-----DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 335 RQG------KFRDVKLSK------QKLHKT---------------ENMFNDINKEKVKNL 367
KF + L + + ++ND
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ------- 124
Query: 368 LIIIKTDVYGSRE----VLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIG 423
+ K +V SR L ++L L K + +I +G+ S +
Sbjct: 125 -VFAKYNV--SRLQPYLKLRQALLELRPAK-NV-LIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 424 F-------NVRADASTRK-LAQINNINIR-----------YHNIIYNIIKEIKSEITNLI 464
N++ S L + + + NI I I++E+ L+
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-IHSIQAELRRLL 238
Query: 465 PLEKKEN-LLGLAEIRQVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSL 523
+ EN LL L ++ N + C IL L R ++ T L +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFN--LSCKIL--LTTRFKQV----------TDFLSAA 284
Query: 524 KRFKDNVKEVKAGF---ECERL-SRIENQIQRDISEIIAFDIQNP-IINII--TITEVKI 576
++ E + L + + +D+ NP ++II +I +
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTT-NPRRLSIIAESIRDGLA 342
Query: 577 TLDYSYAKIFFTTFNKDISIKNILDNLSKA---KNYIRFK-LSKKLHI--HTLPILNFFY 630
T D + + I++ L+ L A K + R HI L ++ +F
Sbjct: 343 TWDN-WKHVNCDKLTT--IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI-WFD 398
Query: 631 DNSIENAMMISKLIDGIKYCMQFHIKKNKN----IIHGVLL----------------LDK 670
+ ++++KL KY + ++K I + L +D
Sbjct: 399 VIKSDVMVVVNKL---HKYSL---VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 671 ---PYGLSSNNA----------------LKKI----------KYLLN----AKKVGYTGT 697
P S++ LK I L+ +K+ + T
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 698 LDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSI 757
+ +L + + Y+ + D YE ++ I+DF +P I
Sbjct: 513 AWNASGSILNT-LQQLKFYKPYICDNDPKYERLV------------NAILDF---LPK-I 555
Query: 758 EIIEKILINFHGKISQIPPMYSALKYKGIPLYKYA 792
E E ++ + + + +I AL + +++ A
Sbjct: 556 E--ENLICSKYTDLLRI-----ALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.7 bits (193), Expect = 1e-14
Identities = 110/726 (15%), Positives = 212/726 (29%), Gaps = 200/726 (27%)
Query: 336 QGKFRDVKLSKQKLHKTENMFNDI--------NKEKVKNLLIIIKTDVYGSREVLTESLK 387
Q +++D+ + D+ +KE++ ++++ K V G+ L +L
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS-KDAVSGTL-RLFWTLL 72
Query: 388 NLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADASTRKLAQINNINIRYHN 447
+ + V+ V + + + S ++ + R+ + + + I +
Sbjct: 73 SKQEEMVQ-----KFVEEVLRINYKF-LMSP-------IKTE--QRQPSMMTRMYIEQRD 117
Query: 448 IIYNIIKEI-KSEITNLIPLEK-KENLLGLAEIRQVILVNKVSKIAGC--YILEGLIRRD 503
+YN + K ++ L P K ++ LL L + V++ G + +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV----LGSGKTWVALDVCLS 173
Query: 504 SKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLSRIENQIQRDISEIIAFDIQN 563
K++ + I W + C + +Q+ + +I
Sbjct: 174 YKVQCKMDFKIFW----------------LNLK-NCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 564 PIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLSKKLHIHTL 623
D+S NI + + +R L K + + L
Sbjct: 217 S--------------DHSS---------------NIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 624 PILNFFYDNSIENAMMIS----------KLIDGIKYCMQFHIKKNKNIIHGVLLLDKPYG 673
+L + NA +S ++ D + HI L
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS----------LDHHSMT 297
Query: 674 LSSNNALKKIKYLLNAKKVGY-TGTLDPFATGLLPLC---FGEATK-----FSNYLSEAD 724
L+ + LL K + L P E+ + + N+
Sbjct: 298 LTPDEVKS----LL-LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 725 KYYEAIIHLGITT-ETGDIEGKIIDFNKNI-PNSIEIIEKILINFHGKISQIPPMYSALK 782
II + E + ++ P S I +L + + M K
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 783 YKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKM 842
L+KY S + + K I I I YL L++ +
Sbjct: 411 -----LHKY--SLVEKQPKESTISIPSI--------YLELKVKLENEYAL---------- 445
Query: 843 LGCGAHLKYLRRIGIDKLTLDKCLNIDTIIK-----YSEYERIS---SLIPIDILLSSFG 894
H R I +D + K + D +I Y Y I I ++ F
Sbjct: 446 -----H----RSI-VDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHHLKNIEHPERMTLFR 494
Query: 895 IIYLSDLLSKRFLHGQNLFLSDENIYILIKSAIIAHVDHGKT--TLIDHLLRQSGTFRKN 952
+++L D RFL + I+ A G TL L N
Sbjct: 495 MVFL-DF---RFLEQK------------IRHDSTAWNASGSILNTLQQ-LKFYKPYICDN 537
Query: 953 QNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNV 1012
R++ N I F N+I + + D + L M ++
Sbjct: 538 DPKYERLV--NAILD------FLPKIE-------ENLICSK-YTDL---LRIAL-MAEDE 577
Query: 1013 LLLIDA 1018
+ +A
Sbjct: 578 AIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 4e-11
Identities = 104/689 (15%), Positives = 205/689 (29%), Gaps = 194/689 (28%)
Query: 578 LDYSYAKI---FFTTFNKDISIKNILDNLSKAKNYIRFKLSKKL--HIHTLPILNFFYDN 632
Y Y I F F + K++ D + LSK+ HI +
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQD-------MPKSILSKEEIDHIIMSK-------D 59
Query: 633 SIENAMMISKLIDGIKYCMQFHIKKNKNIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKV 692
++ + +L LL K ++ K++ ++
Sbjct: 60 AVSGTL---RLFW--------------------TLLSKQ-----EEMVQ--KFVEEVLRI 89
Query: 693 GYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKN 752
Y + P T + Y+ + D+ Y D + +N +
Sbjct: 90 NYKFLMSPIKT----EQRQPSMMTRMYIEQRDRLY------------NDNQ-VFAKYNVS 132
Query: 753 IPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITI--KRKLRYIKIYKI 810
+ + L ++ P K + + SG T K+
Sbjct: 133 RLQPYLKLRQAL-------LELRPA------KNVLIDGVLGSGKTWVALDVCLSYKV--Q 177
Query: 811 TIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDT 870
+D+ I +L L+ +C+ E + +ML L ID
Sbjct: 178 CKMDFKIFWLNLK-NCNS-------PETVLEML----------------QKL--LYQIDP 211
Query: 871 IIKYSEYERISSLIPIDILLSSFGIIYLSDLLSKRFLHGQNLFLSDENIYILIKSAIIAH 930
++ SS I + I L LL + + L + N+ +
Sbjct: 212 --NWTSRSDHSSNIKLRI---HSIQAELRRLLKSK-PYENCLLVLL-NVQ---NAKAWNA 261
Query: 931 VDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEI----EKERGITIFSK--NCSIE--- 981
+ L+ R + + + ++ K +C +
Sbjct: 262 FNLSCKILL--TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 982 -----YNGTRINII-----DTPGHADFGGEV--ERILSMVDNVLLLIDAVEGPMPQTRF- 1028
N R++II D D V +++ +++++ L +++ E + F
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE---YRKMFD 376
Query: 1029 ----------VTRKALKL------GFKPIVVVNKIDRSNARPEWVVDATF---DLFDKLC 1069
+ L L +VVVNK+ + + + ++T ++ +L
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 1070 ATEEQLDFPVIYTSALH-----GYANENSKARQGNMIPLFEA--ILKYVPVHKDNSNNPL 1122
E ALH Y N ++IP + ++ H N +P
Sbjct: 437 VKLENE-------YALHRSIVDHY-NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 1123 QLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKG--LDR 1180
++ + + + + R L +I+ D N N + Q++ +K D
Sbjct: 489 RMTLFRMVFLDF-------RFLEQKIR--HDSTAWNASGSILN--TLQQLKFYKPYICDN 537
Query: 1181 VLVNEALSGDIV-LITGIEEICIGSTICD 1208
E L I+ + IEE I S D
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 2e-09
Identities = 109/759 (14%), Positives = 212/759 (27%), Gaps = 266/759 (35%)
Query: 720 LSEADKYYEAIIHLGITTETGDIEGK-IIDFNKNIPNSIEIIEKILINFHGKISQIPPMY 778
E Y+ I+ + + + K + D K+I + EI + I+++ +S ++
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI-DHIIMSKD-AVSGTLRLF 68
Query: 779 SALKYKGIPLYK----------Y------------ARSGITIKRKLRYI----KIYKIT- 811
L K + + Y S +T YI ++Y
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR----MYIEQRDRLYNDNQ 124
Query: 812 -IIDYTI----PYLTLRIHCSK---GTYIRVLSEDIGKMLGCGAHLKYLRRIGIDK--LT 861
Y + PYL LR + + + G +LG G K +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLID----G-VLGSG------------KTWVA 167
Query: 862 LDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLSDLLSKRFLHGQNLFLSDENIYI 921
LD CL+ K F I +L+ L S E + +
Sbjct: 168 LDVCLSYKVQCKMD-----------------FKIFWLN--LKNCN--------SPETV-L 199
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE 981
+ ++ +D T+ DH NI RI + I+ E + SK
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHS----------SNIKLRI---HSIQAELRRLLKSK----P 242
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
Y N LL++ V+ + A L K I
Sbjct: 243 YE---------------------------NCLLVLLNVQNA----KAW--NAFNLSCK-I 268
Query: 1042 VVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMI 1101
++ + + D T LD + K+
Sbjct: 269 LLTTR-FKQVT----------DFLSAATTTHISLDHH------SMTLTPDEVKS------ 305
Query: 1102 PLFEAILKYVPVHKDN------SNNPLQLQIIS---------LEYSSYLGKIGIGRILSG 1146
L LKY+ + + NP +L II+ + ++ + I+
Sbjct: 306 -LL---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 1147 RIKSL---------QDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGI 1197
+ L + + P A I + ++ + + D++++ +
Sbjct: 362 SLNVLEPAEYRKMFDRLSVF--PPS----AHI-PTILLS----LIWFDVIKSDVMVV--V 408
Query: 1198 EEICIGSTI-CDPSKPN-GLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDH 1255
++ S + P + +P + ++ V + I D
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLE-------LKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 1256 EIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGEL 1315
+ + D Y H+ G+ L + E
Sbjct: 462 D-------DLIPPYLDQYFYS-------HI----------GHHLK--------NIEHPER 489
Query: 1316 YEPYENLFVDIEEINQGIIMQKLNYRG--------GDLKN----IEINEKERVRLEYRIP 1363
+ +F+D + Q I + LK I N+ + RL
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV---- 545
Query: 1364 SRGLIGF---QNEFITLTRGTGLI-SHVFEEYAPFYNKS 1398
++ F E + ++ T L+ + E + ++
Sbjct: 546 -NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 3e-09
Identities = 104/672 (15%), Positives = 207/672 (30%), Gaps = 183/672 (27%)
Query: 900 DLLSKRFLHGQNLFLSD---ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN 956
D+LS ++ F+ + +++ + KS + IDH++ + +
Sbjct: 20 DILS----VFEDAFVDNFDCKDVQDMPKSIL-------SKEEIDHIIMSKD--AVSGTL- 65
Query: 957 ARIMDSNEIEKERGITIFSKNC-SIEYN--GTRI---NIIDTPGHADFGGEVERILSMVD 1010
R+ + ++E + F + I Y + I + + + +R+ + D
Sbjct: 66 -RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN--D 122
Query: 1011 NVLLLIDAVEGPMPQTRFVTRKAL-KLGFKPIVVVN------KIDRSNARPEWVVDATFD 1063
N + V Q R+AL +L V+++ K WV
Sbjct: 123 NQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLIDGVLGSGK--------TWVALDV-- 170
Query: 1064 LFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK-----YVPVHKDNS 1118
+ ++DF + + + N NS E +L+ + + +
Sbjct: 171 CLSY--KVQCKMDFKIFWLN----LKNCNSP----------ETVLEMLQKLLYQIDPNWT 214
Query: 1119 NNPLQLQIISLEYSSYLGKIGIGRILSGRI--KSLQDVVIMNGPDDKPNKAKINQIRVFK 1176
+ I L S + + R+L + L +++ + + + +
Sbjct: 215 SRSDHSSNIKLRIHS--IQAELRRLLKSKPYENCL---LVL---LN------VQNAKAWN 260
Query: 1177 GLD---RVL-------VNEALSGDIVLITGIEEICIGSTICDPSKPNGLPM----LNIDE 1222
+ ++L V + LS ++ + T + L+
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-----PDEVKSLLLKYLDCRP 315
Query: 1223 PTLTINFMVNNSPLA-GREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRG 1281
L ++ +P + I R D+ V +K I E S
Sbjct: 316 QDLPRE-VLTTNPRRLSIIAESI--RDGLATWDNW------KHVNCDKLTTII-ESS--- 362
Query: 1282 ELHLTILIENMRREGYE-LSVSRPRV-I-FKTLNGELYEPYENLFVDIEEINQGIIMQKL 1338
L +L R+ ++ LSV P I L ++ D+ + + +++ KL
Sbjct: 363 ---LNVLEPAEYRKMFDRLSVFPPSAHIPTILL--------SLIWFDVIKSDVMVVVNKL 411
Query: 1339 NYRG---GDLKN--IEI------------NEKE---RVRLEYRIPSRGLIGFQNEFITLT 1378
+ K I I NE + Y IP F ++ +
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK----TFDSDDLIPP 467
Query: 1379 RGTGLI-SHV---------FEEYAPFYNKSKY-DLGKRRNGVLISQYSGKAVAYSLWKLQ 1427
SH+ E F + + D + + A L LQ
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLF--RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 1428 D--RGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLISPIKI 1485
+ +I ND YE ++ I D L E+ L I S +D ++ I
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAI----LDFLPKI--EENL--ICSKYTD-LLR------I 570
Query: 1486 TLEYAIEFINDD 1497
L E I ++
Sbjct: 571 ALMAEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 1e-04
Identities = 43/292 (14%), Positives = 85/292 (29%), Gaps = 75/292 (25%)
Query: 1251 NRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTIL----IENMRREGYELSVSRPRV 1306
++ K+ + + + +V ++ +IL I+++ VS
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQ---DMPKSILSKEEIDHIIMSKDA--VSGTLR 66
Query: 1307 IFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRG 1366
+F TL + E + ++ IN +M ++ E R PS
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLM------------------SPIKTEQRQPSMM 108
Query: 1367 LIGFQNEFITLTRGTGLISHVFEEY----APFYNKSKYDLGKRRNGVLISQY----SGKA 1418
+ + L + VF +Y Y K + L + R + SGK
Sbjct: 109 TRMYIEQRDRLYND----NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 1419 V----AYSLWKLQDR--GRLF-INHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSS 1471
+K+Q + ++F +N + + +L + L +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLN----------LKNCNSPETVL------EMLQKLLYQ 208
Query: 1472 GSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRKRFLKENERKKKL 1523
++ I I LR R LK + L
Sbjct: 209 IDPNWTSRSDHSS-NIKLRIHSIQA-----------ELR-RLLKSKPYENCL 247
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* Length = 403 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 8e-19
Identities = 58/243 (23%), Positives = 89/243 (36%), Gaps = 50/243 (20%)
Query: 71 IVTIMGHVDHGKTSLL----------------DYIRKTNVVFSE---AGGIT---QHIGA 108
I + GHVDHGKT+L+ I +
Sbjct: 11 IGVV-GHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDD 69
Query: 109 YNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHAKIS 167
I+F+D PGHE A GA + D +LVVAA++ PQTRE I
Sbjct: 70 EPKFLRR--ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII 127
Query: 168 GVP-LIVAINKIDKLDINLDRIKQDLISEQV------IPEEYGGASPFISISAKTGVGIN 220
GV LI+ NK+D + K++ + Q + P I +SA + I+
Sbjct: 128 GVKNLIIVQNKVDVVS------KEEAL-SQYRQIKQFTKGTWAENVPIIPVSALHKINID 180
Query: 221 KLLENISLQAEILELKAPVTTPAKGVIIES--------RLDKGKGPVATVLIQSGTLRCS 272
L+E I + I ++ ++I S + ++ KG V I G +
Sbjct: 181 SLIEGI--EEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVD 238
Query: 273 DIV 275
+
Sbjct: 239 QEI 241
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* Length = 403 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 3e-18
Identities = 74/337 (21%), Positives = 121/337 (35%), Gaps = 87/337 (25%)
Query: 928 IAHVDHGKTTLIDHLLRQSG--TFRKNQNINARI----MDSNEIEKERGITIFSKNCSIE 981
+ HVDHGKTTL+ + +G T +K I + S E
Sbjct: 14 VGHVDHGKTTLVQAI---TGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDE 70
Query: 982 YNGTR-INIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEG-PMPQTRFVTRKA 1033
R I+ ID PGH + +M+ D +L++ A E P PQTR
Sbjct: 71 PKFLRRISFIDAPGHEVL------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVAL 124
Query: 1034 LKLGFKPIVVV-NKIDRSNARPEWVVDATFDLFDKLCATEEQL----------DFPVIYT 1082
+G K +++V NK+D VV ++ + Q+ + P+I
Sbjct: 125 GIIGVKNLIIVQNKVD--------VVSK-----EEALSQYRQIKQFTKGTWAENVPIIPV 171
Query: 1083 SALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQII--------SLEYSSY 1134
SALH N+ L E I +Y+ + + + +I +++
Sbjct: 172 SALHKI----------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNEL 221
Query: 1135 LGKIGIGRILSGRIKSLQDVVIMNGPDD--------KPNKAKINQIRVFKGLDRVLVNEA 1186
G + G I+ G K Q++ ++ G +P KI+ IR EA
Sbjct: 222 KGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDE----EFKEA 277
Query: 1187 LSGDIVLI-TGI------EEICIGSTICDPSKPNGLP 1216
G +V I T + + +GS I +
Sbjct: 278 KPGGLVAIGTYLDPSLTKADNLLGSIIT---LADAEV 311
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* Length = 483 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 1e-18
Identities = 66/348 (18%), Positives = 116/348 (33%), Gaps = 85/348 (24%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSG-----TFRKN----QNIN------ARIMDSNEIEKERG 970
++ HVD GK+TL+ LL RK + + A IMD E+ERG
Sbjct: 37 VVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERG 96
Query: 971 ITI------FSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMV------DNVLLLIDA 1018
+T+ F + I+D PGH DF + + + D +L +D
Sbjct: 97 VTVSICTSHF------STHRANFTIVDAPGHRDF------VPNAIMGISQADMAILCVDC 144
Query: 1019 VEGPM-------PQTRFVTRKALKLGFKP-IVVVNKIDR---SNARPEWVVDATFDLFDK 1067
QT+ A LG I+ +NK+D S R E +
Sbjct: 145 STNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVD 204
Query: 1068 LCATEEQLDF-PVIYTSALHGYANENSKARQGNMIP------LFEAI-----LKYVPVHK 1115
+ E+ +++ P+ S G + L +
Sbjct: 205 IGFFEDNINWVPI---SGFSG-EGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEG 260
Query: 1116 DNSNNPLQLQIISLEYSSYLGKIG---IGRILSGRIKSLQDVVIMNGPDDKPNK--AKIN 1170
N ++P ++ + S G++ SG I+ + + I P++ ++
Sbjct: 261 INKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIY------PSEQSCIVD 314
Query: 1171 QIRVFKGLDRVL----VNEALSGDIVLIT----GIEEICIGSTICDPS 1210
+I+V + + A+ GD V + E+I G
Sbjct: 315 KIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVD 362
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* Length = 483 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-09
Identities = 55/273 (20%), Positives = 99/273 (36%), Gaps = 77/273 (28%)
Query: 74 IMGHVDHGKTSL---LDY---------IRKTNVVFSEAG-------------------GI 102
++GHVD GK++L L Y +RK G G+
Sbjct: 38 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV 97
Query: 103 TQHIGAYNVVTNHGSITFLDTPGHEAF-----TAMRARGAKVTDIVVLVVAADDGVM--- 154
T I + T+ + T +D PGH F G D+ +L V
Sbjct: 98 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIM-----GISQADMAILCVDCSTNAFESG 152
Query: 155 ----PQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIP--EEYG---G 204
QT+E + A G+ LI+A+NK+D +D + R ++ I +++P + G
Sbjct: 153 FDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEE--IKSKLLPYLVDIGFFED 210
Query: 205 ASPFISISAKTGVGINKL------------------LENISLQAEILELKAPVTTPAKGV 246
++ IS +G G+ K+ LEN + + P
Sbjct: 211 NINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFS 270
Query: 247 IIESRLDKGKGPVATVL---IQSGTLRCSDIVV 276
++E K ++ ++SG+++ + +
Sbjct: 271 VLEIIPSKKTSNDLALVSGKLESGSIQPGESLT 303
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A Length = 458 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 3e-18
Identities = 77/337 (22%), Positives = 124/337 (36%), Gaps = 67/337 (19%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERG 970
+I HVD GK+T HL+ + G K A ++D + E+ERG
Sbjct: 11 VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERG 70
Query: 971 ITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-------PM 1023
ITI E ++ +ID PGH DF + S D +L+I G
Sbjct: 71 ITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKD 130
Query: 1024 PQTRFVTRKALKLGFKP-IVVVNKIDR---SNARPEWVVDATFDLFDKLCATEEQLDF-P 1078
QTR A LG + IV VNK+D +R + +V T + K+ + + F P
Sbjct: 131 GQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVP 190
Query: 1079 VIYTSALHGYANENSKARQGNM-----------------IPLFEAILKYVPVHKDNSNNP 1121
+ S +G +N N L EAI + ++ P
Sbjct: 191 I---SGWNG---DNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRP-TDKP 243
Query: 1122 LQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNK--AKINQIRVFKGLD 1179
L+L + + +G + +GR+ +G IK V P ++ + +
Sbjct: 244 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFA------PAGVTTEVKSVE----MH 293
Query: 1180 RVLVNEALSGDIVLIT----GIEEICIGSTICDPSKP 1212
+ + + GD V ++EI G+ D
Sbjct: 294 HEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKND 330
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A Length = 458 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 2e-11
Identities = 43/147 (29%), Positives = 56/147 (38%), Gaps = 39/147 (26%)
Query: 72 VTIMGHVDHGKTSL---LDY---------IRKTNVVFSEAG------------------- 100
V ++GHVD GK++ L Y I K +E G
Sbjct: 10 VVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERER 69
Query: 101 GITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVM------ 154
GIT I + T +T +D PGH F G D +L++A G
Sbjct: 70 GITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISK 129
Query: 155 -PQTREAIAHAKISGVP-LIVAINKID 179
QTRE A GV LIVA+NK+D
Sbjct: 130 DGQTREHALLAFTLGVRQLIVAVNKMD 156
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* Length = 397 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 2e-16
Identities = 87/315 (27%), Positives = 138/315 (43%), Gaps = 67/315 (21%)
Query: 928 IAHVDHGKTTL---IDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKNCS 979
I HVDHGKTTL I +L + G A+ EI E+ RGITI N +
Sbjct: 9 IGHVDHGKTTLTAAITKILAEGG--------GAKFKKYEEIDNAPEERARGITI---NAA 57
Query: 980 -IEYN-GTR-INIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPMPQTRFVT 1030
+EY+ R D PGHAD+ + +M+ D +L++ A +GPMPQTR
Sbjct: 58 HVEYSTAARHYAHTDCPGHADY------VKNMITGTAPLDGCILVVAANDGPMPQTREHL 111
Query: 1031 RKALKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATE--EQL--------DFPV 1079
A ++G + +VV VNK D V D+ ++ + L E E L + P+
Sbjct: 112 LLARQIGVEHVVVYVNKADA-------VQDS--EMVE-LVELEIRELLTEFGYKGEETPI 161
Query: 1080 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIG 1139
I SAL + + ++ L +A+ Y+PV + P L + S+ G +
Sbjct: 162 IVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVV 221
Query: 1140 IGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVF-KGLDRVLVNEALSGDIV--LITG 1196
G + G +K + + + + + I +F K LD A +GD + L+ G
Sbjct: 222 TGTLERGILKKGDECEFLGHSKNI--RTVVTGIEMFHKSLD-----RAEAGDNLGALVRG 274
Query: 1197 I--EEICIGSTICDP 1209
+ E++ G + P
Sbjct: 275 LKREDLRRGLVMAKP 289
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* Length = 397 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 5e-14
Identities = 69/253 (27%), Positives = 101/253 (39%), Gaps = 70/253 (27%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAG-------------------GIT---QHIGA 108
+ TI GHVDHGKT+L I K + +E G GIT H+
Sbjct: 6 VGTI-GHVDHGKTTLTAAITK---ILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE- 60
Query: 109 YNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISG 168
Y+ H + D PGH + G D +LVVAA+DG MPQTRE + A+ G
Sbjct: 61 YSTAARHYA--HTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIG 118
Query: 169 VP-LIVAINKIDKLD----INLDRIK-QDLISEQVIPEEYGGASPFISISAKTGVGINKL 222
V ++V +NK D + + L ++ ++L++E G +P I SA
Sbjct: 119 VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK---GEETPIIVGSAL------CA 169
Query: 223 LENISLQ---AEILELKAPV----TTPAKGVIIESRLDK-------------GKGPVATV 262
LE + + +L V P L+K G+G V T
Sbjct: 170 LEQRDPELGLKSVQKLLDAVDTYIPVP------TRDLEKPFLLPVESVYSIPGRGTVVTG 223
Query: 263 LIQSGTLRCSDIV 275
++ G L+ D
Sbjct: 224 TLERGILKKGDEC 236
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Length = 1289 | Back alignment and structure |
|---|
Score = 82.7 bits (204), Expect = 8e-16
Identities = 95/320 (29%), Positives = 140/320 (43%), Gaps = 79/320 (24%)
Query: 928 IAHVDHGKTTL---IDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKNCS 979
I HVDHGKTTL I +L ++ ++I EK RGITI N S
Sbjct: 302 IGHVDHGKTTLTAAITTVLAKTY--------GGAARAFDQIDNAPEEKARGITI---NTS 350
Query: 980 -IEYN-GTR-INIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPMPQTRFVT 1030
+EY+ TR +D PGHAD+ + +M+ D +L++ A +GPMPQTR
Sbjct: 351 HVEYDTPTRHYAHVDCPGHADY------VKNMITGAAQMDGAILVVAATDGPMPQTREHI 404
Query: 1031 RKALKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATE--EQL--------DFPV 1079
++G I+V +NK D V D +L + L E E L D P+
Sbjct: 405 LLGRQVGVPYIIVFLNKCDM-------VDDE--ELLE-LVEMEVRELLSQYDFPGDDTPI 454
Query: 1080 IYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQI-----ISLEYSSY 1134
+ SAL A E + ++ L + Y+P + + P L I IS
Sbjct: 455 VRGSALK--ALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGR---- 508
Query: 1135 LGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVF-KGLDRVLVNEALSGDIV- 1192
G + GR+ G IK ++V I+ + + K+ + +F K LD E +G+ V
Sbjct: 509 -GTVVTGRVERGIIKVGEEVEIVGIKETQ--KSTCTGVEMFRKLLD-----EGRAGENVG 560
Query: 1193 -LITGI--EEICIGSTICDP 1209
L+ GI EEI G + P
Sbjct: 561 VLLRGIKREEIERGQVLAKP 580
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Length = 1289 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 3e-14
Identities = 75/251 (29%), Positives = 107/251 (42%), Gaps = 68/251 (27%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAG-------------------GIT---QHIGA 108
+ TI GHVDHGKT+L I V ++ GIT H+
Sbjct: 299 VGTI-GHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHV-E 353
Query: 109 YNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISG 168
Y+ T H + +D PGH + GA D +LVVAA DG MPQTRE I + G
Sbjct: 354 YDTPTRHYA--HVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVG 411
Query: 169 VP-LIVAINKIDKLD----INLDRIK-QDLISEQVIPEEYGGASPFISISAKTGVGINKL 222
VP +IV +NK D +D + L ++ ++L+S+ P G +P + SA K
Sbjct: 412 VPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP---GDDTPIVRGSAL------KA 462
Query: 223 LENISLQAE-ILELKAPV----TTPAKGVIIESRLDK-------------GKGPVATVLI 264
LE + ILEL + P E +DK G+G V T +
Sbjct: 463 LEGDAEWEAKILELAGFLDSYIPEP------ERAIDKPFLLPIEDVFSISGRGTVVTGRV 516
Query: 265 QSGTLRCSDIV 275
+ G ++ + V
Sbjct: 517 ERGIIKVGEEV 527
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... Length = 405 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 7e-15
Identities = 91/328 (27%), Positives = 140/328 (42%), Gaps = 83/328 (25%)
Query: 928 IAHVDHGKTTL---IDHLLRQSGTFRKNQNINARIMDSNEI-----EKERGITIFSKNCS 979
I HVDHGKTTL + ++ N + D +I E+ RGITI N +
Sbjct: 17 IGHVDHGKTTLTAALTYVAAAENP-------NVEVKDYGDIDKAPEERARGITI---NTA 66
Query: 980 -IEYN-GTR-INIIDTPGHADFGGEVERILSMV------DNVLLLIDAVEGPMPQTRFVT 1030
+EY R + +D PGHAD+ I +M+ D +L++ A +GPMPQTR
Sbjct: 67 HVEYETAKRHYSHVDCPGHADY------IKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 1031 RKALKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATE--EQL--------DFPV 1079
A ++G IVV +NK+D V D +L D L E + L + PV
Sbjct: 121 LLARQVGVPYIVVFMNKVDM-------VDDP--ELLD-LVEMEVRDLLNQYEFPGDEVPV 170
Query: 1080 IYTSALHGYANENSKARQGNMIP--------LFEAILKYVPVHKDNSNNPLQLQI----- 1126
I SAL + + L +AI +Y+P + + P + +
Sbjct: 171 IRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFT 230
Query: 1127 ISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVF-KGLDRVLVNE 1185
I+ G + GRI G++K +V I+ G + K + + + K L E
Sbjct: 231 ITGR-----GTVATGRIERGKVKVGDEVEIV-GLAPETRKTVVTGVEMHRKTLQ-----E 279
Query: 1186 ALSGDIV--LITGI--EEICIGSTICDP 1209
++GD V L+ G+ EE+ G + P
Sbjct: 280 GIAGDNVGVLLRGVSREEVERGQVLAKP 307
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... Length = 405 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 3e-13
Identities = 44/134 (32%), Positives = 60/134 (44%), Gaps = 27/134 (20%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG-----SITF----- 120
+ TI GHVDHGKT+L + V + + Y + IT
Sbjct: 14 VGTI-GHVDHGKTTLTAALTY---VAAAENPNVEVK-DYGDIDKAPEERARGITINTAHV 68
Query: 121 -----------LDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGV 169
+D PGH + GA D +LVV+A DG MPQTRE I A+ GV
Sbjct: 69 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 170 P-LIVAINKIDKLD 182
P ++V +NK+D +D
Sbjct: 129 PYIVVFMNKVDMVD 142
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 8e-12
Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 28/191 (14%)
Query: 46 LNDPESFLLNEYNKNITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQ 104
L DP + + + + + G + GK+S ++ + NV + S+ G T
Sbjct: 18 LEDPRRYTMRLPDAG-------FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTT 70
Query: 105 H--IGAYNVVTNHGSITFLDTPG-HEAFTAMRARGAKV------TDIVVLVVAADDGVMP 155
+ + G +T +DTPG + R R K D +LV D P
Sbjct: 71 DPVYKSMEL-HPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVT--DSAPTP 127
Query: 156 QTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKT 215
+ + K +P +V +NKID L + +K + E A + +SA
Sbjct: 128 YEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKG-------LYESRYEA-KVLLVSALQ 179
Query: 216 GVGINKLLENI 226
G + + + I
Sbjct: 180 KKGFDDIGKTI 190
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-07
Identities = 36/188 (19%), Positives = 62/188 (32%), Gaps = 47/188 (25%)
Query: 934 GKTTLIDHLLRQ--SGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIID 991
GK++ ++ L+ Q S + S E+ +T ++D
Sbjct: 46 GKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVT----------------LVD 89
Query: 992 TPGHADFG--GE-----VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVV 1044
TPG D G G R+ D +L+ D+ P V ++ +VVV
Sbjct: 90 TPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYE--DDVVNLFKEMEIPFVVVV 147
Query: 1045 NKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLF 1104
NKID + E + E + + V+ SAL +
Sbjct: 148 NKIDVLGEKAEELKG----------LYESRYEAKVLLVSALQKK----------GFDDIG 187
Query: 1105 EAILKYVP 1112
+ I + +P
Sbjct: 188 KTISEILP 195
|
| >2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens} Length = 530 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 1e-08
Identities = 26/164 (15%), Positives = 43/164 (26%), Gaps = 41/164 (25%)
Query: 703 TGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEK 762
L + E K Y A+I N + IE
Sbjct: 391 RDLQLVTREAIGHMKEGEEEKTKTYSALIWT------------------NKAIQKKDIEF 432
Query: 763 ILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTL 822
+ KI Q P+ + R +R I+ + + L
Sbjct: 433 LNDIKDLKIDQKTPLRVLHR----------RP-----LAVRARVIHFMETQYVDEHHFRL 477
Query: 823 RIHCSKGTYIRVL--------SEDIGKMLGCGAHLKYLRRIGID 858
+ GTYI+ +IG ++ A + L +D
Sbjct: 478 HLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVD 521
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 1e-07
Identities = 35/166 (21%), Positives = 75/166 (45%), Gaps = 29/166 (17%)
Query: 81 GKTSLLDYIRKTN--VVFSEAG----GITQHIGAYNVVTNHG-SITFLDTPG-------- 125
GK+SL++ + +V + AG + T + +DT G
Sbjct: 187 GKSSLVNAMLGEERVIVSNVAGTTRDAV------DTSFTYNQQEFVIVDTAGMRKKGKVY 240
Query: 126 --HEAFTAMRARGA-KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLD 182
E ++ +RA A +++V +V+ ++G++ Q + +A +G +++ +NK D +D
Sbjct: 241 ETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVD 300
Query: 183 INLDRIKQ--DLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ +K+ + I + +Y +P + +SA T I+ L+ I
Sbjct: 301 KDESTMKEFEENIRDHFQFLDY---APILFMSALTKKRIHTLMPAI 343
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-04
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 18/121 (14%)
Query: 980 IEYNGTRINIIDTPG-----HADFGGE---VERILSMVDN---VLLLIDAVEGPMPQTRF 1028
YN I+DT G E V R L +D V +++D EG + Q +
Sbjct: 218 FTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR 277
Query: 1029 VTRKALKLGFKPIV-VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-PVIYTSALH 1086
+ A + G K +V VVNK D + + + ++ D + LD+ P+++ SAL
Sbjct: 278 IAGYAHEAG-KAVVIVVNKWDAVDKDESTMKEFEENIRDHF----QFLDYAPILFMSALT 332
Query: 1087 G 1087
Sbjct: 333 K 333
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301 | Back alignment and structure |
|---|
Score = 54.0 bits (131), Expect = 1e-07
Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 24/122 (19%)
Query: 118 ITFLDTPG-HEAFTAM------RARGA-KVTDIVVLVVAADDGVMPQTREAIAHAK--IS 167
I F+DTPG H+ A+ A + VV VV P+ K +
Sbjct: 57 IVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVG 116
Query: 168 GVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPF---ISISAKTGVGINKLLE 224
VP+++ NK+D + + Y P +SA + +L
Sbjct: 117 KVPILLVGNKLDAAK-----------YPEEAMKAYHELLPEAEPRMLSALDERQVAELKA 165
Query: 225 NI 226
++
Sbjct: 166 DL 167
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301 | Back alignment and structure |
|---|
Score = 45.5 bits (109), Expect = 8e-05
Identities = 45/194 (23%), Positives = 67/194 (34%), Gaps = 55/194 (28%)
Query: 934 GKTTLIDHLLRQ--SGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINII- 990
GK+TL+++LL + + Q R+ RGI R I+
Sbjct: 19 GKSTLLNNLLGVKVAPISPRPQTTRKRL---------RGI----------LTEGRRQIVF 59
Query: 991 -DTPG---HADFGGE-----VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP- 1040
DTPG D GE V L+ V+ V+ ++D P P+ V R L K
Sbjct: 60 VDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP 119
Query: 1041 -IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-PVIYTSALHGYANENSKARQG 1098
++V NK+D + E + A E L SAL
Sbjct: 120 ILLVGNKLDAAKYPEE-----------AMKAYHELLPEAEPRMLSALDER---------- 158
Query: 1099 NMIPLFEAILKYVP 1112
+ L +L +P
Sbjct: 159 QVAELKADLLALMP 172
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 2e-07
Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 34/169 (20%)
Query: 81 GKTSLLDYI----RKTNVVFSEAG----GITQHIGAYNVVTNHG-SITFLDTPG------ 125
GK++L + I R +V G + + V G F+DT G
Sbjct: 192 GKSTLFNAILNKER--ALVSPIPGTTRDPV------DDEVFIDGRKYVFVDTAGLRRKSR 243
Query: 126 -----HEAFTAMRARGA-KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKID 179
E ++ R + + D+VV+V+ A G+ Q + + G +V NK D
Sbjct: 244 VEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWD 303
Query: 180 KLDINLDRIKQ--DLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ R + L E++ +Y SP I SA G I+++++ +
Sbjct: 304 LVVHREKRYDEFTKLFREKLYFIDY---SPLIFTSADKGWNIDRMIDAM 349
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 6e-04
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 23/124 (18%)
Query: 980 IEYNGTRINIIDTPG------HADFGGE---VERILSMVDN---VLLLIDAVEGPMPQTR 1027
+ +G + +DT G E R++ ++ V++++DA +G Q +
Sbjct: 223 VFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ 282
Query: 1028 FVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF----PVIYTS 1083
+ + G +VV NK D R + +D F K E+L F P+I+TS
Sbjct: 283 RMAGLMERRGRASVVVFNKWDLVVHR-----EKRYDEFTK--LFREKLYFIDYSPLIFTS 335
Query: 1084 ALHG 1087
A G
Sbjct: 336 ADKG 339
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308 | Back alignment and structure |
|---|
Score = 53.2 bits (129), Expect = 3e-07
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 17/121 (14%)
Query: 118 ITFLDTPG-HEAFTAMR--------ARGA-KVTDIVVLVVAADDGVMPQTREAIAHA-KI 166
I FLDTPG +E + A+ + + D+++ ++ A +G P+ E + K
Sbjct: 61 IIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP 120
Query: 167 SGVPLIVAINKIDKLDINLDRIKQDLISE-QVIPEEYGGASPFISISAKTGVGINKLLEN 225
P+IV INKIDK+ ++++ I +++ + + ISA G +++L++
Sbjct: 121 LNKPVIVVINKIDKIG-----PAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKT 175
Query: 226 I 226
I
Sbjct: 176 I 176
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 6e-06
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 29/137 (21%)
Query: 990 IDTPG-----HADFGGE-----VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
+DTPG +D G ++ L D +L +IDA EG P+ + + +K K
Sbjct: 64 LDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNK 123
Query: 1040 P-IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-PVIYTSALHGYANENSKARQ 1097
P IVV+NKID+ L D++ ++ + ++ SAL G
Sbjct: 124 PVIVVINKIDKIGPA-----KNVLPLIDEI--HKKHPELTEIVPISALKGA--------- 167
Query: 1098 GNMIPLFEAILKYVPVH 1114
N+ L + ILKY+P
Sbjct: 168 -NLDELVKTILKYLPEG 183
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 7e-07
Identities = 40/175 (22%), Positives = 68/175 (38%), Gaps = 28/175 (16%)
Query: 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG--- 125
P V I GH + GK++LL + + T+ I + +DTPG
Sbjct: 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLD 226
Query: 126 ----------HEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAH---AKISGVPLI 172
+A A+R G + I + + G + + + + +P +
Sbjct: 227 RPISERNEIEKQAILALRYLGNLI--IYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFL 284
Query: 173 VAINKIDKLDI-NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
V INKID D N+ R+++ + + + I ISA G GI+ + E I
Sbjct: 285 VVINKIDVADEENIKRLEKFVKEKGL---------NPIKISALKGTGIDLVKEEI 330
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 16/89 (17%)
Query: 141 DIVVLVVAADDGVMPQTRE---AIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQV 197
D V+ +V E + +P+ V NK D + E +
Sbjct: 85 DRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD------------ITGETL 132
Query: 198 IPEEYGGASPFISISAKTGVGINKLLENI 226
E G I +SA+TG G++ L ++
Sbjct: 133 GMSEVNGH-ALIRLSARTGEGVDVLRNHL 160
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 26/120 (21%), Positives = 38/120 (31%), Gaps = 26/120 (21%)
Query: 979 SIEYNGTRINIIDTPGHADFGGEVERI--------LSMVDNVLLLIDAVEGPMPQTRFVT 1030
I +G ++IIDT G + EVERI + D VL ++D +
Sbjct: 46 HIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIW 105
Query: 1031 RKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 1087
+ + VV NK D + E +I SA G
Sbjct: 106 PEFIARLPAKLPITVVRNKADITGETLG---------------MSEVNGHALIRLSARTG 150
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPE 200
DIV+ V+ A + + R+ + +I +V INK+D ++ I+E+ I
Sbjct: 325 DIVLFVLDASSPLDEEDRKILE--RIKNKRYLVVINKVDVVE---------KINEEEIKN 373
Query: 201 EYGGASPFISISAKTGVGINKLLENIS 227
+ G + ISA G G+ KL E+I
Sbjct: 374 KLGTDRHMVKISALKGEGLEKLEESIY 400
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 6e-04
Identities = 30/153 (19%), Positives = 53/153 (34%), Gaps = 32/153 (20%)
Query: 979 SIEYNGTRINIIDTPG-HADFGGEVERI--------LSMVDNVLLLIDAVEGPMPQTRFV 1029
I G I+DT G ++ VER+ + D VL ++DA + R +
Sbjct: 285 EIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKI 344
Query: 1030 TRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYA 1089
+ +VV+NK+D E + + D ++ SAL G
Sbjct: 345 --LERIKNKRYLVVINKVDVVEKINE-----------EEIKNKLGTDRHMVKISALKGE- 390
Query: 1090 NENSKARQGNMIPLFEAILKYVPVHKDNSNNPL 1122
+ L E+I + + ++ L
Sbjct: 391 ---------GLEKLEESIYRETQEIFERGSDSL 414
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A Length = 364 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-06
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 22/134 (16%)
Query: 111 VVTNHGSITFLDTPG------H---EAF--TAMRARGAKVTDIVVLVV------AADDGV 153
+ N+ I +DT G +AF T A+ + D ++LV+
Sbjct: 221 IPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYS---DALILVIDSTFSENLLIET 277
Query: 154 MPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISA 213
+ + E + +SG P++V +NKIDK++ D K+ + E++ E Y I ISA
Sbjct: 278 LQSSFEILREIGVSGKPILVTLNKIDKIN--GDLYKKLDLVEKLSKELYSPIFDVIPISA 335
Query: 214 KTGVGINKLLENIS 227
+ L + I
Sbjct: 336 LKRTNLELLRDKIY 349
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 4e-06
Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 21/121 (17%)
Query: 118 ITFLDTPG---------HEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISG 168
++DTPG + + ++V+ VV P + +
Sbjct: 58 AIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRW-TPDDEMVLNKLREGK 116
Query: 169 VPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPF---ISISAKTGVGINKLLEN 225
P+I+A+NK+D + ++ + + + F + ISA+TG+ ++ +
Sbjct: 117 APVILAVNKVDNVQ------EKADLLPHL--QFLASQMNFLDIVPISAETGLNVDTIAAI 168
Query: 226 I 226
+
Sbjct: 169 V 169
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301 | Back alignment and structure |
|---|
Score = 47.4 bits (114), Expect = 2e-05
Identities = 42/193 (21%), Positives = 68/193 (35%), Gaps = 52/193 (26%)
Query: 934 GKTTLIDHLLRQ--SGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINII- 990
GK+TL++ LL Q S T RK Q RI+ GI + I
Sbjct: 20 GKSTLLNKLLGQKISITSRKAQTTRHRIV---------GI----------HTEGAYQAIY 60
Query: 991 -DTPG-HADFGGE--------VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP 1040
DTPG H + + V+ V+ +++ P V K +
Sbjct: 61 VDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT-PDDEMVLNKLREGKAPV 119
Query: 1041 IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-PVIYTSALHGYANENSKARQGN 1099
I+ VNK+D + + L L Q++F ++ SA G N
Sbjct: 120 ILAVNKVDNVQEKAD--------LLPHLQFLASQMNFLDIVPISAETGL----------N 161
Query: 1100 MIPLFEAILKYVP 1112
+ + + K++P
Sbjct: 162 VDTIAAIVRKHLP 174
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 34/157 (21%), Positives = 53/157 (33%), Gaps = 42/157 (26%)
Query: 101 GITQHIGAYNVVTNHGSI---TFLDTPG-----------HEAFTAM-------RARGAKV 139
G+T+ I +D PG E A+ V
Sbjct: 33 GVTRKI-------IEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDV 85
Query: 140 TDIVVLV----------VAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIK 189
V++V G +P E + +P IVA+NK+DK+ N+ +
Sbjct: 86 --AVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIK-NVQEVI 142
Query: 190 QDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ ++E+ FI ISAK G I +L I
Sbjct: 143 -NFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRI 178
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 31/159 (19%), Positives = 51/159 (32%), Gaps = 40/159 (25%)
Query: 980 IEYNGTRINIIDTPG-----------HADFGGEVERILS----MVDNVLLLIDAVEGPMP 1024
IE IID PG E+ + +D +L++D P
Sbjct: 39 IEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEI 98
Query: 1025 QTRFVTRKALKL-----------GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073
R+ R + + IV VNK+D+ + V++ L +K
Sbjct: 99 IKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIK-NVQEVINF---LAEKFEVPLS 154
Query: 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112
++D I SA G N+ L I + +
Sbjct: 155 EIDKVFIPISAKFGD----------NIERLKNRIFEVIR 183
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 5e-06
Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 32/180 (17%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQ----------HIGAYNVVTNHG---S 117
IV G GKT+ L +I + ++ ++ G
Sbjct: 17 IV-YYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTR 75
Query: 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIA---------HAKISG 168
PG + A R + D +V V + + E++ +
Sbjct: 76 FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDD 135
Query: 169 VPLIVAINKIDKLD-INLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
VP+++ +NK D D + ++ ++ + + G P + A G G+ + L+ +S
Sbjct: 136 VPIVIQVNKRDLPDALPVEMVRAVV--------DPEGKFPVLEAVATEGKGVFETLKEVS 187
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 28/234 (11%), Positives = 66/234 (28%), Gaps = 32/234 (13%)
Query: 64 ESLVRAPI-VTIMGHVDHGKTSLLDYIRKTNVVFSEAG-----GITQHIGAYNVVTNHGS 117
+ + + + V + G GK+S ++ +R A +T Y N +
Sbjct: 63 KEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPN 121
Query: 118 ITFLDTPGHEAFTA---MRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVA 174
+ F D PG + K + ++ + + +
Sbjct: 122 VVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFV 181
Query: 175 INKIDKLDINLDRIKQDLISEQVIPEE-----------YGGASP---FISISAKTGVGIN 220
K+D N + ++ + ++ G A P +S
Sbjct: 182 RTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFP 241
Query: 221 KLLENI-----SLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTL 269
L++ + + + P T + +IE + K + + +
Sbjct: 242 VLMDKLISDLPIYKRHNFMVSLPNITDS---VIEKKRQFLKQRIWLEGFAADLV 292
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 4e-05
Identities = 39/265 (14%), Positives = 76/265 (28%), Gaps = 39/265 (14%)
Query: 934 GKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTP 993
GK++ I+ L N+ A E+ ER N + D P
Sbjct: 81 GKSSFINTLRG-----IGNEEEGAAKTGVVEVTMERHPYKHP-------NIPNVVFWDLP 128
Query: 994 GHADFGGEVERILSMVDN---VLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS 1050
G + L + +I + + + + + V K+D
Sbjct: 129 GIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSD 188
Query: 1051 NARPEWVVDATFDLFDKLCAT---------EEQLDFPVIYTSALHGYANENSKARQGNMI 1101
TFD L E + P I+ + +K
Sbjct: 189 ITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLS--------NKNVCHYDF 240
Query: 1102 P-LFEAILKYVPVHKDNSNNPLQLQIISLE-----YSSYLGKIGIGRILSGRIKSLQDVV 1155
P L + ++ +P++K N + L I+ +I + + + + +
Sbjct: 241 PVLMDKLISDLPIYK-RHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLT 299
Query: 1156 IMNGPDDKPNKAKINQIRVFKGLDR 1180
+ D + K + R G+D
Sbjct: 300 FLLDSDLETLKKSMKFYRTVFGVDE 324
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 2e-05
Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 21/119 (17%)
Query: 979 SIEYNGTRINIIDTPGHADFGGEVERI--------LSMVDNVLLLIDAVEGPMPQTRFVT 1030
++ T + DT G + G E+E ++ D +L L+D +
Sbjct: 275 CFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEI 334
Query: 1031 RKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHG 1087
R+ K + V NK+DR+ + + VI SAL+G
Sbjct: 335 RELKAAHPAAKFLTVANKLDRAANADALIRAI-----------ADGTGTEVIGISALNG 382
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 2e-05
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 141 DIVVLVVAADDGVMPQTREAIAH--AKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI 198
D+++ ++ + I A + NK+D N D + + +
Sbjct: 314 DLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLD-RAANADALIRAI------ 366
Query: 199 PEEYGGASPFISISAKTGVGINKLLENI 226
G + I ISA G GI+ L +++
Sbjct: 367 --ADGTGTEVIGISALNGDGIDTLKQHM 392
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 3e-05
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPE 200
D+V+L + A G +E ++ PLI+ +NKID L+ +Q+I
Sbjct: 305 DLVLLTIDAATGWTTGDQEIYE--QVKHRPLILVMNKID------------LVEKQLITS 350
Query: 201 --EYGGASPFISISAKTGVGINKLLENI 226
+ + +A GI+ L I
Sbjct: 351 LEYPENITQIVHTAAAQKQGIDSLETAI 378
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 23/175 (13%)
Query: 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG---- 125
+ + G + GK+S ++ + + NV T+++ + +DTPG
Sbjct: 30 KTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDR 89
Query: 126 -HE--------AFTAMRARGAKVTDIVVLVV--AADDGVMPQTREAIAHA---KISGVPL 171
E TA+ + +++ ++ + G+ + + + ++ S +
Sbjct: 90 AFENRNTIEMTTITALA----HINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSI 145
Query: 172 IVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
++ NKIDK +++ I L+ +Q I + F S S TGVG+ +
Sbjct: 146 VIGFNKIDKCNMDSLSIDNKLLIKQ-ILDNVKNPIKFSSFSTLTGVGVEQAKITA 199
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 18/161 (11%)
Query: 81 GKTSLLDYIRKTNVVFSEAGGIT---QHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGA 137
GKT LL + N F E T + + V + DT G E + +R
Sbjct: 30 GKTCLL--MSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY 87
Query: 138 KVTDIVVLVVAAD-----DGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDL 192
+TD+ ++ + V + + VP ++ +ID D + +
Sbjct: 88 PMTDVFLICFSVVNPASFQNVKEEWVPELKE-YAPNVPFLLIGTQIDLRDDPKTLARLND 146
Query: 193 ISEQVIPEEYG-------GASPFISISAKTGVGINKLLENI 226
+ E+ I E G GA ++ SA T G+ + +
Sbjct: 147 MKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 187
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} Length = 550 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 5e-04
Identities = 41/211 (19%), Positives = 62/211 (29%), Gaps = 45/211 (21%)
Query: 934 GKTTLIDHLLRQ--------------------SGTFRKNQNINARIMDSN---EIEKERG 970
GKT+ I +LL Q G NA ++D G
Sbjct: 77 GKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFG 136
Query: 971 ITIFSKNCSIEYNGTR---INIIDTPGH-----------ADFGGEVERILSMVDNVLLLI 1016
T ++ + I+IIDTPG DF + VD ++LL
Sbjct: 137 NTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLF 196
Query: 1017 DAVEGPMPQ-TRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075
DA + + K VV+NK D + ++ L L
Sbjct: 197 DAHKLEISDEFSEAIGALRGHEDKIRVVLNKADM--VETQQLMRVYGALMWALGKVVGTP 254
Query: 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEA 1106
+ +Y + R+ LFE
Sbjct: 255 EVLRVYIGSFWSQPLLVPDNRR-----LFEL 280
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 7e-04
Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 18/160 (11%)
Query: 81 GKTSLLDYIRKTNVVFSEA---GGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGA 137
GKTSL+ + T + +V + DT G + F +R
Sbjct: 32 GKTSLV--VSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCY 89
Query: 138 KVTDIVVLVVAAD-----DGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDL 192
TDI +L + V + I P+I+ + D + I+ D
Sbjct: 90 TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC-HCPKAPIILVGTQSDLREDVKVLIELDK 148
Query: 193 ISEQVIPEEYG-------GASPFISISAKTGVGINKLLEN 225
E+ +PEE A+ +I SA T + ++ +
Sbjct: 149 CKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDA 188
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 Length = 210 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 15/108 (13%)
Query: 143 VVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL-----DINLDRIKQDLISEQV 197
+V+++ + ++ I A S + ++V + K DKL L+ +++ +
Sbjct: 112 LVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAV----- 166
Query: 198 IPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKG 245
+ G + S+ G++KL + + PV G
Sbjct: 167 --LAFNGDVQVETFSSLKKQGVDKLRQKL---DTWFSEMQPVEETQDG 209
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 9e-04
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 2/100 (2%)
Query: 127 EAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD 186
+ F + K +VV +V D + H + +++ NK D + ++
Sbjct: 57 DDFLRILNGIGKSDALVVKIV--DIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVK 114
Query: 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
K + ISA G GI +L + I
Sbjct: 115 HDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAI 154
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1527 | |||
| 3e3x_A | 332 | BIPA; MCSG,PSI2, structural genomics, protein stru | 100.0 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 100.0 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 100.0 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 100.0 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 100.0 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 100.0 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 100.0 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 100.0 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 100.0 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 100.0 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 100.0 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 100.0 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 100.0 | |
| 1k8w_A | 327 | TRNA pseudouridine synthase B; protein-RNA complex | 100.0 | |
| 1r3e_A | 309 | TRNA pseudouridine synthase B; RNA modification, p | 100.0 | |
| 1sgv_A | 316 | TRNA pseudouridine synthase B; hinged motion, tRNA | 100.0 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 100.0 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 100.0 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 100.0 | |
| 3u28_A | 400 | H/ACA ribonucleoprotein complex subunit 4; pseudou | 100.0 | |
| 2apo_A | 357 | Probable tRNA pseudouridine synthase B; protein-pr | 100.0 | |
| 2aus_C | 334 | Pseudouridine synthase; isomerase, structural prot | 100.0 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 100.0 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 100.0 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 100.0 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 100.0 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 100.0 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 100.0 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 100.0 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 100.0 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 100.0 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 100.0 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 100.0 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 100.0 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 100.0 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.97 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.97 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.97 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.97 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.97 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.97 | |
| 1z9b_A | 135 | Translation initiation factor IF-2; protein synthe | 99.95 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.95 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.95 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.95 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.95 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.95 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.94 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.94 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.94 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.94 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.94 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.94 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.94 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.94 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.94 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.93 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.93 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.93 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.93 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.93 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.93 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.93 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.93 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.93 | |
| 1jos_A | 128 | RBFA, ribosome-binding factor A; RNA binding prote | 99.92 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.92 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.92 | |
| 1pa4_A | 116 | Probable ribosome-binding factor A; structural gen | 99.91 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.91 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.91 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.91 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.9 | |
| 1d1n_A | 99 | Initiation factor 2; beta-barrel, gene regulation; | 99.89 | |
| 2kzf_A | 106 | RBFA, ribosome-binding factor A; JCSG, joint cente | 99.89 | |
| 2crv_A | 120 | IF-2MT, translation initiation factor IF-2; riboso | 99.89 | |
| 2e7g_A | 129 | Putative ribosome-binding factor A; RBFA, structur | 99.89 | |
| 2dyj_A | 95 | Ribosome-binding factor A; 16S rRNA processing, 17 | 99.88 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.87 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.82 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.82 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.81 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.79 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.78 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.77 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.77 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.77 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.77 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.76 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.76 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.76 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.76 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.76 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.76 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.76 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.76 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.76 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.76 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.76 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.75 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.75 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.75 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.75 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.75 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.75 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.75 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.75 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.75 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.75 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.75 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.75 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.75 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.75 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.75 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.75 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.74 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.74 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.74 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.74 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.74 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.74 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.74 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.74 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.74 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.74 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.74 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.74 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.74 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.74 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.74 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.74 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.74 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.74 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.74 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.73 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.73 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.73 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.73 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.73 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.73 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.73 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.73 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.73 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.73 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.73 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.73 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.73 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.73 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.73 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.73 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.73 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.73 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.73 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.73 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.73 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.73 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.73 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.73 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.73 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.73 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.72 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.72 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.72 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.72 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.72 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.72 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.72 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.72 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.72 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.72 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.72 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.71 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.71 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.71 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.71 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.71 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.71 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.71 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.7 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.7 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.7 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.7 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.7 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.7 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.7 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.7 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.7 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.7 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.7 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.7 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.7 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.7 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.7 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.7 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.69 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.69 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.69 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.69 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.69 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.68 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.68 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.68 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.68 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.67 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.67 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.67 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.67 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.67 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.67 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.66 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.66 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.65 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.65 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.65 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.65 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.64 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.64 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.64 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.64 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.63 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.44 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.63 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.63 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.63 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.63 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.62 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.62 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.62 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.62 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.62 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.62 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.62 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.62 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.62 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.61 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.61 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.61 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.61 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.61 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.6 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.6 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.6 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.6 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.6 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.6 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.6 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.6 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.59 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.59 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.59 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.59 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.59 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.59 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.59 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.58 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.58 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.58 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.58 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.58 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.58 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.58 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.58 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.58 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.58 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.58 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.58 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.58 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.58 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.58 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.57 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.57 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.57 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.57 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.57 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.57 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.57 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.57 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.57 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.57 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.57 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.57 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.57 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.57 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.57 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.56 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.56 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.56 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.56 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.56 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.56 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.56 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.56 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.55 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.55 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.55 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.55 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.55 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.55 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.55 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.55 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.55 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.54 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.54 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.54 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.54 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.54 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.54 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.53 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.53 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.53 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.53 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.53 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.53 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.52 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.52 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.51 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.51 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.51 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.51 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.51 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.51 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.51 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.51 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.5 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.5 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.5 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.49 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.49 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.49 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.48 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.48 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.48 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.48 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.47 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.47 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.47 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.47 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.47 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.46 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.46 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.45 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.44 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.44 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.17 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.44 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.44 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.43 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.39 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.39 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.38 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.38 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.38 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.37 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.36 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.36 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.36 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.35 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.34 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.33 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.32 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.32 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.32 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.32 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.31 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.31 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.3 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.29 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.29 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.29 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.28 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.27 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.27 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.27 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.25 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.25 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.25 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.24 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.24 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.21 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.2 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.2 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.18 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.18 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.16 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.15 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.15 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.14 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.14 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.13 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.13 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.12 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.09 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.07 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.07 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.05 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.03 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.01 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 98.99 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 98.99 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 98.92 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 98.92 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.9 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 98.88 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 98.86 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 98.85 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 98.83 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 98.82 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.81 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.78 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 98.75 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.72 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 98.69 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.66 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 98.62 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 98.61 | |
| 3e1y_E | 204 | Eukaryotic peptide chain release factor GTP-bindi | 98.59 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 98.59 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 98.56 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 98.54 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 98.54 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 98.53 | |
| 2v9k_A | 530 | Uncharacterized protein FLJ32312; pseudouridine sy | 98.52 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 98.43 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.41 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.37 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.34 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 98.27 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.23 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.23 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 98.22 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.14 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.12 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.09 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 98.08 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 98.07 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.06 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.06 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 98.05 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.04 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.01 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.98 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.95 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 97.93 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 97.91 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 97.89 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 97.88 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 97.85 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 97.79 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.79 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 97.77 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.77 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.68 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 97.65 | |
| 3dh3_A | 290 | Ribosomal large subunit pseudouridine synthase F; | 97.64 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 97.63 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 97.61 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 97.58 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.55 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.52 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.33 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 97.22 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 97.19 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 97.16 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 97.09 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 96.99 | |
| 3e1y_E | 204 | Eukaryotic peptide chain release factor GTP-bindi | 96.83 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 96.78 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 96.72 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 96.63 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.57 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 96.57 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.55 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 96.44 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 96.36 | |
| 1xe1_A | 116 | Hypothetical protein PF0907; structural genomics, | 96.35 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.34 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 96.21 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 96.21 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.12 | |
| 1v9k_A | 228 | Ribosomal large subunit pseudouridine synthase C; | 96.07 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 96.04 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.0 | |
| 1xe1_A | 116 | Hypothetical protein PF0907; structural genomics, | 95.74 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 95.68 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 95.59 | |
| 2gml_A | 237 | Ribosomal large subunit pseudouridine synthase F; | 95.49 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 95.37 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 95.36 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 95.33 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 95.32 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 95.1 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 95.0 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 94.64 | |
| 1vio_A | 243 | Ribosomal small subunit pseudouridine synthase A; | 94.43 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 94.42 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 94.42 | |
| 1ksk_A | 234 | Ribosomal small subunit pseudouridine synthase A; | 94.15 | |
| 1d1n_A | 99 | Initiation factor 2; beta-barrel, gene regulation; | 94.0 | |
| 2i82_A | 217 | Ribosomal large subunit pseudouridine synthase A; | 93.84 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 93.74 |
| >3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-100 Score=874.75 Aligned_cols=328 Identities=54% Similarity=0.911 Sum_probs=281.6
Q ss_pred EEecceecccCCeeeCCCCCCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCC
Q psy1758 1193 LITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDD 1272 (1527)
Q Consensus 1193 ai~gl~~~~iGdTi~~~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~ 1272 (1527)
+++|++++.+|||||++++|.+||++++++|+++|+|.|+++||+|++++++|+++|+++|.||+++||||+|+++++++
T Consensus 2 av~Gl~~~~iGDTl~~~~~p~~L~~~~~~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t~ 81 (332)
T 3e3x_A 2 NATGLGELKISDTICAQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDPD 81 (332)
T ss_dssp ---------------------------CCCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSSTT
T ss_pred CccCCCCCccCCEEcCCCCcccCCCCCCCCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecchhHHHHHHHHHHhcCcEEEEecCeeeEEEecceEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecC
Q psy1758 1273 SIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINE 1352 (1527)
Q Consensus 1273 ~g~~v~g~GelhL~vl~e~lrreg~ev~vs~P~V~yre~~g~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~ 1352 (1527)
+ |+|+|||||||+|++|+|||||+|+.+++|+|+|||++|++||||++++|+||++|+|+||++|++|||++.+|++.+
T Consensus 82 ~-~~v~G~GELHLeIl~ErLrrEg~ev~v~~P~V~YrEt~G~llEPi~~v~I~vPee~~G~Vm~~L~~RRG~i~~m~~~~ 160 (332)
T 3e3x_A 82 K-FRVSGRGELHLSILIENMRREGFELAVSRPEVIIXEEDGQLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPDG 160 (332)
T ss_dssp E-EEEEESSHHHHHHHHHHHHHHTBCEEECCCEECCEEETTEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEECS
T ss_pred e-EEEEeeCHHHHHHHHHHHHhcCceEEEeCCEEEEEEECCEEECcEEEEEEEECHHHHHHHHHHHHhhcccccCceECC
Confidence 8 999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeec-cccccccccccccceeecCCCchhHHHHHHHHhhcCc
Q psy1758 1353 KERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPF-YNKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGR 1431 (1527)
Q Consensus 1353 ~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~-~~~~~~~i~~~~~g~li~~~~g~~~~~~l~~~~~rG~ 1431 (1527)
+++++|+|.+|+|+|+||+++|+|+|+|+|+|+|+|+||+|+ + |++..|.||+|||+++|+||+|||+++|+||+
T Consensus 161 ~g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~p----g~i~~r~~g~lv~~~~g~~~~y~l~~~~~rg~ 236 (332)
T 3e3x_A 161 KGRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXG----GNIGQRVNGVLIANAAGKALTNALFNLQERGR 236 (332)
T ss_dssp SSEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCC----CSCSCCCCCEEEESSCEECCHHHHHHHTTSEE
T ss_pred CCeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCC----CccccccCceEEEcCCCcEeHhhhhhHHhhce
Confidence 689999999999999999999999999999999999999999 6 99999999999999999999999999999999
Q ss_pred ccccCccccccceeecccCCCCceeeecccccccccccccCCCcceeecCCcccCHHHHHhcccCCeeEEecCCceeeec
Q psy1758 1432 LFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLISPIKITLEYAIEFINDDELVEITPKNIRLRK 1511 (1527)
Q Consensus 1432 ~fv~~~~~vy~gm~~g~~~~~~d~~~n~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~de~~e~tp~~~r~rk 1511 (1527)
+||.||++||+|||||||+|+|||+|||||+||||||||||+|++++|+||+.||||||||||+|||||||||++|||||
T Consensus 237 ~fv~pg~~vy~gmivg~~~r~~dl~vn~~k~k~ltn~r~~~~d~~~~l~~~~~~~le~~~~~i~~de~vevtp~~ir~rk 316 (332)
T 3e3x_A 237 LFIGHGVEVYEGMVIGIHSRDNDLTVNALKGKQLTNVRASGTDDAQVLTPPIVMTLEQALEFIDDDELVEVTPESIRIRK 316 (332)
T ss_dssp ESCCTTCEECTTEEEEEESSSSCEEECSCC--------------CCCCCCCCCCCHHHHHHHCCTTEEEEECSSCEEEEE
T ss_pred EEecCCCeEECCeEEEecCCcCCcEEecccccccccccccCCccceEecCCcccCHHHHHhhhcCCeeEEEcCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHhhhcc
Q psy1758 1512 RFLKENERKKKLHK 1525 (1527)
Q Consensus 1512 ~~~~~~~~~~~~~~ 1525 (1527)
++|++++|||++|+
T Consensus 317 ~~l~~~~r~~~~~~ 330 (332)
T 3e3x_A 317 XFLTESDRXRASRS 330 (332)
T ss_dssp SSCSHHHHHHHC--
T ss_pred ccCChhHhHHhhhc
Confidence 99999999998775
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-88 Score=836.16 Aligned_cols=486 Identities=56% Similarity=0.904 Sum_probs=451.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
+|+++|+++||+|||||||+++|++..+...+.+|+|+++..+.+.+++..++|||||||++|..++.++++.+|+++||
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 58899999999999999999999998887778889999999888888888999999999999999999999999999999
Q ss_pred EeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHH
Q psy1758 147 VAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226 (1527)
Q Consensus 147 vda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l 226 (1527)
+|++++.++||.+++..+...++|+|+++||+|+.+++.+++...+......++.|++.+|++++||++|.|+++|+++|
T Consensus 82 Vda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I 161 (501)
T 1zo1_I 82 VAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAI 161 (501)
T ss_dssp EETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHT
T ss_pred eecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhh
Confidence 99999999999999999999999999999999998755444443333334445566667899999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceeeeEeEeeccCCceeeecCCCcceEe
Q psy1758 227 SLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEI 306 (1527)
Q Consensus 227 ~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~kVr~i~~~~g~~v~~a~~~~~v~I 306 (1527)
..+++..+.+.+++.|+.+.+++++.+++.|++++++|.+|+|++||.+++|+.+++||+|+..++..+++|+||+++.|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~~~~kVr~i~~~~g~~v~~a~~g~~V~i 241 (501)
T 1zo1_I 162 LLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEI 241 (501)
T ss_dssp TTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEBSSCEEEEECCTTTTSEEEECCSSCSSS
T ss_pred hhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEccceeEEEEEEecCCCcCcEeccCCcEEE
Confidence 76544445566677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHH
Q psy1758 307 QGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESL 386 (1527)
Q Consensus 307 ~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l 386 (1527)
.|+.+.|.+|+.+.++.+++.|++++++|+.+.++.+++++....+++++.++.+++.+.+++|||||++||+|||.++|
T Consensus 242 ~gl~~~~~~Gd~~~~~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l 321 (501)
T 1zo1_I 242 LGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSL 321 (501)
T ss_dssp EEECSCCCTTEEEEEECSSCTTBCSSCBTTCCCCSHHHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHH
T ss_pred eCCCCCCCCCCEEEecCCHHHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHhhhhccCCceEEEEEEECCcCCHHHHHHHH
Confidence 99999999999999999999999999999988777777777777888888888777888999999999999999999999
Q ss_pred HhcCCCceeeeEEeeccCcCChhhHHHHHhcCCEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHHHHHHHHHHhccCCc
Q psy1758 387 KNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPL 466 (1527)
Q Consensus 387 ~~~~~~~v~i~iv~~~vG~it~~Dv~~A~~~~a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~l~~ 466 (1527)
.++++++++++|++++||+||++||.+|++++|+||||||+++++++++|++.||+|++|||||||+|+++++|+++|+|
T Consensus 322 ~~~~~~~~~~~v~~~~vG~i~~~Dv~~a~~~~a~i~~fnv~~~~~~~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~~~~~ 401 (501)
T 1zo1_I 322 LKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSP 401 (501)
T ss_dssp TTTTCCCSBCCCCCSSSSSSHHHHSTTTCGGGCCEEECSSCCCHHHHTTSCSSSSCEEESCCCSHHHHHTHHHHTTTSST
T ss_pred HhhcccccceEEEEeccCCCCHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeEeEEEeEEEEcCCCCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccccchhh
Q psy1758 467 EKKENLLGLAEIRQVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLSRIE 546 (1527)
Q Consensus 467 ~~~e~~~g~a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~r~~ 546 (1527)
+++|+++|+|+|+++|+.+|.|+||||+|++|++++|+++||+|||++||+|+|.||||+|+||+||++|+|||+.++.|
T Consensus 402 ~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~~g~ecgi~~~~~ 481 (501)
T 1zo1_I 402 ELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNY 481 (501)
T ss_dssp TCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEETTCCEEEEBCCC
T ss_pred eeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCccccEECCCCEEEEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhh
Q psy1758 547 NQIQRD 552 (1527)
Q Consensus 547 ~~i~~~ 552 (1527)
++|+..
T Consensus 482 ~~~~~g 487 (501)
T 1zo1_I 482 NDVRTG 487 (501)
T ss_dssp TTCCTT
T ss_pred CCCCCC
Confidence 998873
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-87 Score=827.38 Aligned_cols=485 Identities=42% Similarity=0.668 Sum_probs=439.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEe-CCeEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT-NHGSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~-~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+|+|+|+++||+|||||||+++|++..+...+.+|+|+++..+.+.+ ++.+++|||||||++|..++.++++.+|++||
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 57899999999999999999999999988888999999999888877 45689999999999999999999999999999
Q ss_pred EEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHH
Q psy1758 146 VVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLEN 225 (1527)
Q Consensus 146 Vvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~ 225 (1527)
|+|++++.++||.+++..+...++|+++|+||+|+.+.+.......+.......+.|+..++++++||++|.|+++|++.
T Consensus 82 VVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~ 161 (537)
T 3izy_P 82 VVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEA 161 (537)
T ss_dssp ECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHH
T ss_pred EEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHH
Confidence 99999999999999999999999999999999999876655555555555555667777789999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceeeeEeEeeccCCceeeecCCCcceE
Q psy1758 226 ISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVE 305 (1527)
Q Consensus 226 l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~kVr~i~~~~g~~v~~a~~~~~v~ 305 (1527)
|..+.+..+.+.+++.|+.+.|++++.+++.|++++++|.+|+|++||.+++|..+++||+|+.++|+++++|.||++|.
T Consensus 162 I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~~g~~~~kVr~i~~~~g~~v~~A~~G~~V~ 241 (537)
T 3izy_P 162 TIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVAGKSWAKVRLMFDENGRAVNEAYPSMPVG 241 (537)
T ss_dssp HHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEECCSSCCEEEEEEEECCCCCSCCSCCSTTCC
T ss_pred HHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEEeCCceEEEEEEEcCCCCCCcEEcCCCEEE
Confidence 98877666666677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHH-----------------hhhh---------hhhHHHh-
Q psy1758 306 IQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQ-----------------KLHK---------TENMFND- 358 (1527)
Q Consensus 306 I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~-----------------~~~~---------~~~~~~~- 358 (1527)
|.|+++.|.+||+|.++.+++.||+++++|+.+.++.++.++ .... +..++.+
T Consensus 242 i~g~~~~~~~Gd~l~~~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (537)
T 3izy_P 242 IIGWRDLPSAGDEILEVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSYIKYREK 321 (537)
T ss_dssp CCSSEEEEEEESSCCSCCSSCCCCCCSCCSSSHHHHTGGGBSSCCCCCCCCCCCCCSSTTHHHHSCSHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCEEEecCChHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHhhhhhccchhhhhhhhhhhhh
Confidence 999999999999999999999999999998876554433210 0000 1111111
Q ss_pred ----------hccccceeEeEEEEeccCCcHHHHHHHHHhcCC-CceeeeEEeeccCcCChhhHHHHHhcCCEEEEeCCC
Q psy1758 359 ----------INKEKVKNLLIIIKTDVYGSREVLTESLKNLST-DKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVR 427 (1527)
Q Consensus 359 ----------~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~-~~v~i~iv~~~vG~it~~Dv~~A~~~~a~Ii~Fnv~ 427 (1527)
..+.+.+.+|+|||||++||+|||.++|.++++ ++|+++|++++||+||++||.+|++++|+||||||+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~iik~d~~Gs~ea~~~~l~~~~~~~~~~~~i~~~~vG~i~~~Dv~~a~~~~a~i~~fnv~ 401 (537)
T 3izy_P 322 RQQQPLKPKEKLERDSNVLPVIVKGDVDGSVEAILNVMDTYDASHECELDLVHFGVGDISENDVNLAETFHGVIYGFNVN 401 (537)
T ss_dssp HHHCTTTTCCCCCCCCCCCCBEEEBCCHHHHHHHHHHHHHCCCCSSCCCCBSCCCBSCBCHHHHHHHHHHSCCEEESSCC
T ss_pred hhhhhccchhhcccccceeeEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEEEecCCCCCHHHHHHHHhcCCeEEEecCC
Confidence 113456889999999999999999999999998 899999999999999999999999999999999999
Q ss_pred CChhHHHHHHhCCCeEEEeehHHHHHHHHHHHHhccCCcceeeeeeEeEEEeEEEEcCC---CCeEEEEEEeeeEEeeCC
Q psy1758 428 ADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKENLLGLAEIRQVILVNK---VSKIAGCYILEGLIRRDS 504 (1527)
Q Consensus 428 ~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~l~~~~~e~~~g~a~v~~vF~~~k---~~~iaGc~V~~G~i~~~~ 504 (1527)
++++++++|++.||+|++|||||+|+||+++.|+++|+|+++|+++|+|+|+++|.+++ .|+||||+|++|++++|+
T Consensus 402 ~~~~~~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~~l~~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~ 481 (537)
T 3izy_P 402 AGNVIQQLAAKKGVKIKLHKIIYRLIEDLQEELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQK 481 (537)
T ss_dssp BCHHHHHHHHHHTCCCBCSCSSCCSHHHHHHHHSSSSSCSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSS
T ss_pred CCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhccCCceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCC
Confidence 99999999999999999999999999999999999999999999999999999999985 578999999999999999
Q ss_pred eEEEeeCCeEEEEEEeceecccccccceeecCccccccchh-hhhhhh
Q psy1758 505 KIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLSRI-ENQIQR 551 (1527)
Q Consensus 505 ~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~r~-~~~i~~ 551 (1527)
++||+|||++||+|+|.||||+|+||+||++|+|||+.++. |++|+.
T Consensus 482 ~~r~~r~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~~~~~~~ 529 (537)
T 3izy_P 482 KFKLIRNGHVIWKGSLISLKHHKDDTSVVKTGMDCGLSLDEEKIEFKV 529 (537)
T ss_dssp EEEEESSSSEEEEEECCCCCCSSCCCSEEETTCEEEEESSSSCSSCSC
T ss_pred eEEEecCCEEEEEEEEehhcccCcccceEcCCCEEEEEEcCcccCCCC
Confidence 99999999999999999999999999999999999999998 999886
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-82 Score=824.27 Aligned_cols=454 Identities=27% Similarity=0.423 Sum_probs=392.8
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccc--eecchhhhhcccceeEeeeeEEEEec-------CeEE
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA--RIMDSNEIEKERGITIFSKNCSIEYN-------GTRI 987 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~--~~~D~~~~E~erGiTi~~~~~~~~~~-------~~~i 987 (1527)
.+.+++|||||+||+|||||||+++||+.+|.+.+.+.++. ++||+++.|++|||||.++..++.|+ ++.|
T Consensus 8 ~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~i 87 (709)
T 4fn5_A 8 TPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRV 87 (709)
T ss_dssp SCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEE
T ss_pred CchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEE
Confidence 45689999999999999999999999999999988777654 79999999999999999999999996 6899
Q ss_pred EEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhh
Q psy1758 988 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDK 1067 (1527)
Q Consensus 988 niiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~ 1067 (1527)
||||||||.||.+||+++|+++|+||+||||.+|+++||+.+|++|.+.++|+|+||||||++.+++..+++++++.|..
T Consensus 88 NlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~ 167 (709)
T 4fn5_A 88 NVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGH 167 (709)
T ss_dssp EEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCS
T ss_pred EEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999886631
Q ss_pred hc--------cc-----------------------------------------------------c--------------
Q psy1758 1068 LC--------AT-----------------------------------------------------E-------------- 1072 (1527)
Q Consensus 1068 l~--------~~-----------------------------------------------------~-------------- 1072 (1527)
.. .. +
T Consensus 168 ~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~ 247 (709)
T 4fn5_A 168 TPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELS 247 (709)
T ss_dssp CEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCC
T ss_pred ceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCcc
Confidence 00 00 0
Q ss_pred -------------cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCC--------------------CCCC
Q psy1758 1073 -------------EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK--------------------DNSN 1119 (1527)
Q Consensus 1073 -------------~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~--------------------~~~~ 1119 (1527)
...-+|+++.||+++. |+.+||+++++++|+|. ++++
T Consensus 248 ~~~~~~~l~~~~~~~~~~pv~~gsa~~~~----------gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~ 317 (709)
T 4fn5_A 248 EAEIKEGLRLRTLACEIVPAVCGSSFKNK----------GVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDN 317 (709)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECBTTTTB----------THHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTT
T ss_pred HHHHHHHHHHhhhhceeeeeeeeecccCC----------chHHHHHHHHhhCCCCcccccccccCCccccccccccCCcc
Confidence 0012588999999987 99999999999999993 4678
Q ss_pred CCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEeccee
Q psy1758 1120 NPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEE 1199 (1527)
Q Consensus 1120 ~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~ 1199 (1527)
+||+++|||+.+|++.|+++|+|||||+|++||+|++... | ...+|++++.++|.++.++++|.|||||+|.|+++
T Consensus 318 ~pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~--~--~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~ 393 (709)
T 4fn5_A 318 EPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVK--G--KKERVGRMVQMHANQREEIKEVRAGDIAALIGMKD 393 (709)
T ss_dssp SCCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTT--C--CCCBCCCEECCCSSCCCEESEECTTCEEEECSCSS
T ss_pred CcceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecC--C--cEEeecceeEeecceeeEeeeecCCCeeeecCCCc
Confidence 9999999999999999999999999999999999987654 3 45789999999999999999999999999999999
Q ss_pred cccCCeeeCCCCCCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEe
Q psy1758 1200 ICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSG 1279 (1527)
Q Consensus 1200 ~~iGdTi~~~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g 1279 (1527)
+.+|||||+.+.+..+|++++++|++++++.|.++ .+.++|.++|.++.++||+|+++.++++|+ ++|+|
T Consensus 394 ~~~gdTl~~~~~~~~~~~~~~~~Pvv~vavep~~~---------~d~~kL~~~L~kL~~eDPsl~v~~~eetge-~vi~g 463 (709)
T 4fn5_A 394 VTTGDTLCSIEKPIILERMDFPEPVISVAVEPKTK---------ADQEKMGIALGKLAQEDPSFRVKTDEESGQ-TIISG 463 (709)
T ss_dssp CCTTCEEECSSSCCBCC----CCCSEEEEECBSST---------TTHHHHHHHHHHHHHHCTTCEEEEETTTTE-EEEEE
T ss_pred CccCCEecCCCccccCCCCCCCCcceEEEEecCCH---------HHhhhhHHHHHHHHHhCCeEEEEEecCCCc-EEEEE
Confidence 99999999999999999999999999999988654 146899999999999999999999999999 99999
Q ss_pred cchhHHHHHHHHHHhc-CcEEEEecCeeeEEEe--c--------------------------------------------
Q psy1758 1280 RGELHLTILIENMRRE-GYELSVSRPRVIFKTL--N-------------------------------------------- 1312 (1527)
Q Consensus 1280 ~GelhL~vl~e~lrre-g~ev~vs~P~V~yre~--~-------------------------------------------- 1312 (1527)
+|||||+|++++|||+ |+|+.+++|+|+|||+ .
T Consensus 464 ~GELHLei~l~rLr~e~gvev~vs~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~f~ 543 (709)
T 4fn5_A 464 MGELHLDIIVDRMKREFGVEANIGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNITEGLVFE 543 (709)
T ss_dssp SCHHHHHHHHHHHHTTTCCCBCCBCCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCCBC-CCCBCCEEEEE
T ss_pred ECHHHHHHHHHHHHHHhCceEEEeeceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeeccccccCCCcCceEEe
Confidence 9999999999999976 9999999999999984 0
Q ss_pred --------------------------c----------------------------------------------eEeeeeE
Q psy1758 1313 --------------------------G----------------------------------------------ELYEPYE 1320 (1527)
Q Consensus 1313 --------------------------g----------------------------------------------~llEP~~ 1320 (1527)
| ++||||+
T Consensus 544 ~~~~~~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LlEPi~ 623 (709)
T 4fn5_A 544 NEVVGGVVPKEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAASMATKQLAQKGGGKVLEPIM 623 (709)
T ss_dssp ECC-CCSSCGGGHHHHHHHHHHHHHHCSSSSCCBSEEEEEEEECCCCTTTBCHHHHHHHHHHHHHTHHHHSCCEEEEEEE
T ss_pred cccccccCCHHHHHHHHHHHHHHHhcCcccCCceeeeEEEEEEccccCCCCChHHHHHHHHHHHHHHHHHCCCEEECceE
Confidence 0 3789999
Q ss_pred EEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1321 NLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1321 ~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
.++|.||++|+|+||++|++|||++++|++.+ +...|++++|++|++||.++||++|+|+|+|+++|+||++++
T Consensus 624 ~veI~~p~~~~G~V~~~L~~RRG~i~~~~~~~-~~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~~F~~y~~vp 697 (709)
T 4fn5_A 624 KVEVVTPEDYMGDVMGDLNRRRGLIQGMEDTV-SGKVIRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKYAEAP 697 (709)
T ss_dssp EEEEEEETTTHHHHHHHHGGGTCEEEEEEECS-SEEEEEEEEESGGGTTHHHHHHHHTTTCCEEECCEEEEEECC
T ss_pred EEEEEECHHHHHHHHHHHHhcCCEEeceEecC-CCEEEEEEecHHHhhCHHHHHHhhCCCeEEEEEEECCcccCC
Confidence 99999999999999999999999999999864 566799999999999999999999999999999999999998
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-81 Score=788.17 Aligned_cols=482 Identities=26% Similarity=0.399 Sum_probs=413.8
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC-----eEEEEEeCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-----TRINIIDTP 993 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-----~~iniiDTP 993 (1527)
.+++|||+|+||+|||||||+++|++.++.+.+.+ ...+++|+.+.|++||+|+.++...+.|.. +.+||||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTP 81 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISERE-KREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTP 81 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC------------------------CCCCSEEEEEECTTSCEEEEEEECCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCccccc-ccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECC
Confidence 46789999999999999999999999888876554 356889999999999999999999998863 899999999
Q ss_pred CCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 994 GHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 994 Gh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
||.||..++.++++.+|++||||||++|+++||..+|..+...++|+|+|+||+|+++++++++.+++.+.+ +...
T Consensus 82 Gh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~l---g~~~- 157 (600)
T 2ywe_A 82 GHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVL---GLDP- 157 (600)
T ss_dssp CSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTS---CCCG-
T ss_pred CcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhh---CCCc-
Confidence 999999999999999999999999999999999999999999999999999999999988877777776643 2111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCE
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQD 1153 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~ 1153 (1527)
.+++++||++|. |+++|+++|.+++|+|..+.++||+++|+++++|+|.|+++++||++|++++||.
T Consensus 158 ---~~vi~vSAktg~----------GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~ 224 (600)
T 2ywe_A 158 ---EEAILASAKEGI----------GIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDK 224 (600)
T ss_dssp ---GGCEECBTTTTB----------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCE
T ss_pred ---ccEEEEEeecCC----------CchHHHHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCE
Confidence 248999999998 9999999999999999998999999999999999999999999999999999999
Q ss_pred EEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe-c---ceecccCCeeeCCCCC--CCCCCCccCCCceeE
Q psy1758 1154 VVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT-G---IEEICIGSTICDPSKP--NGLPMLNIDEPTLTI 1227 (1527)
Q Consensus 1154 v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~-g---l~~~~iGdTi~~~~~~--~~l~~~~~~~P~l~~ 1227 (1527)
|.++++ + ...+|.+++.+.+ ++.+++++.||||+++. | ++++.+|||||+.++| .++|+++.++|++++
T Consensus 225 I~~~~~--~--~~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~P~v~~ 299 (600)
T 2ywe_A 225 IMLMST--G--KEYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPMVYA 299 (600)
T ss_dssp EEETTT--T--EEEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSCCSSCCSCCCCCCCCEEE
T ss_pred EEeccc--c--ceEeeecccccCC-CceECCEEecCceeeeeccccchhhccCCCEEEeCCCccccccCCCCCCCcEEEE
Confidence 999876 3 4578999988765 68999999999999874 5 5588999999998887 689999999999999
Q ss_pred EEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCC--CCeEEEEecchhHHHHHHHHHHhc-CcEEEEecC
Q psy1758 1228 NFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHD--DSIYEVSGRGELHLTILIENMRRE-GYELSVSRP 1304 (1527)
Q Consensus 1228 ~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~--~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs~P 1304 (1527)
.+.|++++ ++++|+++|.|+.++||+|+++++.+. +.||+|+|||||||+|++|||+|| |+|+.+++|
T Consensus 300 ~i~p~~~~---------d~~~l~~aL~kL~~eD~sl~~~~et~~~l~~g~~~~~~G~lHlei~~erl~re~~~~v~~~~P 370 (600)
T 2ywe_A 300 GIYPAEDT---------TYEELRDALEKYAINDAAIVYEPESSPALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAP 370 (600)
T ss_dssp EEEECTTC---------CHHHHHHHHHHHHTTCSSCEEEEEEETTTEEEEEEEESSHHHHHHHHHHHHHHSCCCEEECCC
T ss_pred Eeeccccc---------cHHHHHHHHHHHhhhCCEEEEEECCccccccceEEEeccHHHHHHHHHHHHhhcCceEEEEee
Confidence 99987752 468999999999999999999976332 568999999999999999999987 999999999
Q ss_pred eeeEEEe---cc-------------------eEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEe
Q psy1758 1305 RVIFKTL---NG-------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRI 1362 (1527)
Q Consensus 1305 ~V~yre~---~g-------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~v 1362 (1527)
+|+|||+ +| .+||||++++|.+|+||+|+||++|++|||++++|++.++++++|+|++
T Consensus 371 ~V~yreti~~~g~~~~~~~p~~~p~~~~~~~~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~ 450 (600)
T 2ywe_A 371 NVIYRVKKKFTDEVIEVRNPMDFPDNAGLIEYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNTVYLEYEM 450 (600)
T ss_dssp EECEEEEETTCSSCEEESSGGGSCSCGGGEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEE
T ss_pred eEEEEEEecCCCcEEEEeChhhCCCCCcccccccCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEcCCCEEEEEEEE
Confidence 9999994 57 8999999999999999999999999999999999999766899999999
Q ss_pred chhhh-cChHHHHccccceeEEEEeEecceeeccccccccccccccceeecCCCchhHHHHHH--HHhhcCcccccCccc
Q psy1758 1363 PSRGL-IGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLW--KLQDRGRLFINHNDL 1439 (1527)
Q Consensus 1363 P~~~l-~g~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~~~~~g~li~~~~g~~~~~~l~--~~~~rG~~fv~~~~~ 1439 (1527)
|++|| +||+++|+|+|+|+|+|+|+|+||+|++ ..+-..+++++..+|+|+.+| +++.||+.+|..-.+
T Consensus 451 P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~~~~--------~~~~~~~~ng~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (600)
T 2ywe_A 451 PLSEIIVDFHDKIKSISRGFASYDYEFIGYRPSD--------LIKLTVLINKKPVDALSFIVHADRAQKFARRVAEKLRE 522 (600)
T ss_dssp EHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEECC--------EEEEEEEESSSBCGGGCEEEEGGGHHHHHHHHHHHHHH
T ss_pred cHHHHHhhHHHhhhhcCCCeEEEEEEeccceEcc--------ccccccccCCCEeccchhhhhhHHHHHHHHHHHHHHHh
Confidence 99999 6999999999999999999999999986 234467788889999999999 488999998876554
Q ss_pred c
Q psy1758 1440 V 1440 (1527)
Q Consensus 1440 v 1440 (1527)
+
T Consensus 523 ~ 523 (600)
T 2ywe_A 523 T 523 (600)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-84 Score=829.06 Aligned_cols=472 Identities=22% Similarity=0.299 Sum_probs=423.6
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccc--eecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA--RIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~--~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
+||||||+||+|||||||+++||+.+|.+++.+.++. ++||+++.|++|||||.++..++.|++++|||||||||.||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 5899999999999999999999999999999888764 79999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcc--------
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA-------- 1070 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~-------- 1070 (1527)
.+|++++|+++|+||+||||.+|+++||+.+|++|.++++|+|+||||||++.+++..+++++++.|.....
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~~ 160 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELY 160 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCSC
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeEee
Confidence 999999999999999999999999999999999999999999999999999999999999999876631000
Q ss_pred -------------------c---------------------------ccccCCcEEEeccccCCcCCCcccccCCChhHH
Q psy1758 1071 -------------------T---------------------------EEQLDFPVIYTSALHGYANENSKARQGNMIPLF 1104 (1527)
Q Consensus 1071 -------------------~---------------------------~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll 1104 (1527)
. ....-+|++++||+++. |+++||
T Consensus 161 ~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~----------Gv~~LL 230 (638)
T 3j25_A 161 PNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNI----------GIDNLI 230 (638)
T ss_dssp GGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCC----------SHHHHH
T ss_pred ccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCC----------CchhHh
Confidence 0 00012799999999998 999999
Q ss_pred HHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEee
Q psy1758 1105 EAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVN 1184 (1527)
Q Consensus 1105 ~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~ 1184 (1527)
+++.+++|+|..+.+.||+++|||+.+|++.|+++++||+||+|++||.|++... .+.++.+++.++|.++.+++
T Consensus 231 d~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~-----~~~~v~~l~~~~g~~~~~v~ 305 (638)
T 3j25_A 231 EVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEK-----EKIKVTEMYTSINGELCKID 305 (638)
T ss_dssp HHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCC-----CCSSBCCCCSSCCCCBSCCC
T ss_pred hhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccC-----cceeEEeeeccccccccccc
Confidence 9999999999998899999999999999999999999999999999999976543 34689999999999999999
Q ss_pred eeecCCEEEEecceecccCCeeeCCCCCCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceE
Q psy1758 1185 EALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLR 1264 (1527)
Q Consensus 1185 ~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~ 1264 (1527)
+|.|||||++.| ..+.+|||+++...+..++.++.++|++++++.|.+. .+.++|.++|.++.++||+|+
T Consensus 306 ~a~aGdIv~i~g-~~~~~~~tl~d~~~~~~~~~i~~p~Pv~~~aiep~~~---------~d~~kL~~aL~kL~~eDPsl~ 375 (638)
T 3j25_A 306 RAYSGEIVILQN-EFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPSKP---------EQREMLLDALLEISDSDPLLR 375 (638)
T ss_dssp TTBCCCCSCCCS-SSCSSEECSSSSSSGGGCSCCCCCCCCCCCEEECCSH---------HHHHHHHHHHHHHHHTCTTCC
T ss_pred ccccceEEEEec-cccccCceecCCCCcccccCccCCCccceeeeccCCh---------HHHHHHHHHHHHHhhcCCeeE
Confidence 999999999988 5678999999988887888899999999999987542 246899999999999999999
Q ss_pred EEecCCCCCeEEEEecchhHHHHHHHHHHhc-CcEEEEecCeeeEEEe-----c--------------------------
Q psy1758 1265 VTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVSRPRVIFKTL-----N-------------------------- 1312 (1527)
Q Consensus 1265 v~~~~~~~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs~P~V~yre~-----~-------------------------- 1312 (1527)
++.++++++ ++|+|||||||+|+++||||+ |+|+.+++|+|+|||+ +
T Consensus 376 v~~~~et~e-~il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrEti~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~~ 454 (638)
T 3j25_A 376 YYVDSTTHE-IILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPLKNAEYTIHIEVPPNPFWASIGLSVSPLPLG 454 (638)
T ss_dssp CCCCSSSSC-CCCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCBCCCSCCEECCCCCSSSCCCCCCCCEECCCCCSS
T ss_pred EEecCCCce-EEEccccHHHHHHHHHHHHHHhCCcEEEeCCceeEEEEecccceEEEEEecCCCCceEEEEEEEecccCC
Confidence 999999999 999999999999999999976 9999999999999984 0
Q ss_pred -----------------------------------------------------------------------------ceE
Q psy1758 1313 -----------------------------------------------------------------------------GEL 1315 (1527)
Q Consensus 1313 -----------------------------------------------------------------------------g~l 1315 (1527)
.++
T Consensus 455 ~g~~f~~~~~~~~~~~~~~~av~~g~~~~~~~Gl~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~L 534 (638)
T 3j25_A 455 SGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTEL 534 (638)
T ss_dssp CCCCCCCCCCSSSTTHHHHHHHHHHHHHHHHSSSSCCCCCSCCCCCCCCCCSSCSCCSHHHHHHHHHHHHHHHHHHCCBC
T ss_pred CCcEEEeeeecccchhhhhhHHhhhHHHHHhccccCCcccceEEEEEECcccCCCCCHHHHHHHHHHHHHHHHHHCCCEE
Confidence 036
Q ss_pred eeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1316 YEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1316 lEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
||||+.++|.||++|+|+||++|++|||++++|+.. +++++|++++|++||+||.++|+|+|+|+|+|+++|+||++++
T Consensus 535 LEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~-~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~vp 613 (638)
T 3j25_A 535 LEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLK-NNEVILSGEIPARCIQEYRSDLTFFTNGRSVCLTELKGYHVTT 613 (638)
T ss_dssp CCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCC-TTEEEEECCCSSCCHHHHHHHHHHTTTTCCEEECCCCCCCCCC
T ss_pred EcCcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEec-CCeEEEEEEECHHHhhCHHHHHHhhCCCcEEEEEEECceEECC
Confidence 899999999999999999999999999999999985 5789999999999999999999999999999999999999998
Q ss_pred ccccccccccccceeecCCCchhHHHHHHHH
Q psy1758 1396 NKSKYDLGKRRNGVLISQYSGKAVAYSLWKL 1426 (1527)
Q Consensus 1396 ~~~~~~i~~~~~g~li~~~~g~~~~~~l~~~ 1426 (1527)
|+...+..- ....-+-.-|.++.+
T Consensus 614 ----gdp~~~~~~---~~~~~d~~~~~~~k~ 637 (638)
T 3j25_A 614 ----GEPVCQPRR---PNSRIDKVRYMFNKI 637 (638)
T ss_dssp ----SCCSCCCCC---CCCCHHHHHHHHHHH
T ss_pred ----CCccccccC---CCChhhHHHHHHhcc
Confidence 665433211 223445556666654
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-79 Score=775.48 Aligned_cols=480 Identities=26% Similarity=0.406 Sum_probs=405.8
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec-----CeEEEEEeCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-----GTRINIIDTPG 994 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-----~~~iniiDTPG 994 (1527)
+++|||+|+||+|||||||+++|++.+|.+.+.. ...+++|+.+.|++||+|+.++...+.|. ++.+|||||||
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPG 80 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDRE-MEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPG 80 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC---------------------------CEEEEEEECTTSCEEEEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCccccc-ccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCC
Confidence 4689999999999999999999999988877653 35689999999999999999999999996 38999999999
Q ss_pred CCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 995 HADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 995 h~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
|.||..++.++++.+|++|+||||++|+++||..+|..+...++|+|+|+||+|+++++++++.+++.+.+. ..
T Consensus 81 h~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg---~~--- 154 (599)
T 3cb4_D 81 HVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVG---ID--- 154 (599)
T ss_dssp CGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTC---CC---
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhC---CC---
Confidence 999999999999999999999999999999999999999999999999999999999888888787776542 11
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEE
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDV 1154 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v 1154 (1527)
..+++++||++|. |+++|+++|.+++|+|..+.++||+++|+++++|+|.|+++++||++|+|++||.+
T Consensus 155 -~~~vi~vSAktg~----------GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v 223 (599)
T 3cb4_D 155 -ATDAVRCSAKTGV----------GVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKV 223 (599)
T ss_dssp -CTTCEEECTTTCT----------THHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEE
T ss_pred -cceEEEeecccCC----------CchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEE
Confidence 1248999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe-c---ceecccCCeeeCCCCC--CCCCCCccCCCceeEE
Q psy1758 1155 VIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT-G---IEEICIGSTICDPSKP--NGLPMLNIDEPTLTIN 1228 (1527)
Q Consensus 1155 ~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~-g---l~~~~iGdTi~~~~~~--~~l~~~~~~~P~l~~~ 1228 (1527)
.++++ + ...+|.+++.+.+ ++++++++.|||++++. | ++++.+|||||+.+++ .++|++..++|++.+.
T Consensus 224 ~~~~~--~--~~~~v~~i~~~~~-~~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~P~v~~~ 298 (599)
T 3cb4_D 224 KVMST--G--QTYNADRLGIFTP-KQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAG 298 (599)
T ss_dssp EETTT--C--CEEECCEEEEESS-SEEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCCSSCCTTCCCCCCCEEEE
T ss_pred Eeccc--c--ceeEEeeeeeccC-CceECCEEcCCCeeEeeccccccccCccCCEeeecCCccccccccccCCCcceEEE
Confidence 99876 3 3578999988875 58899999999998774 4 5588999999999888 7899999999999999
Q ss_pred EEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCC--CCeEEEEecchhHHHHHHHHHHhc-CcEEEEecCe
Q psy1758 1229 FMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHD--DSIYEVSGRGELHLTILIENMRRE-GYELSVSRPR 1305 (1527)
Q Consensus 1229 ~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~--~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs~P~ 1305 (1527)
+.|.+++ +.++|.++|.++.++||+|+++++.+. ..||+|++||+|||+|++|||+|| |+|+.+++|+
T Consensus 299 i~p~~~~---------d~~~l~~aL~kL~~eD~sl~~~~et~~~l~~gfr~g~lG~lhlei~~erl~~e~~~~~~~~~P~ 369 (599)
T 3cb4_D 299 LFPVSSD---------DYEAFRDALGKLSLNDASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPT 369 (599)
T ss_dssp EEESSGG---------GHHHHHHHHHHHHTTCSSCEEEEEEETTTEEEEEEEESSHHHHHHHHHHHHHTSCCCEEECCCE
T ss_pred EEecCcc---------CHHHHHHHHHHHHhhCcEEEEEeccccccccceEEEeccHHHHHHHHHHHHHHcCceEEEEeee
Confidence 9987642 468999999999999999999965332 567999999999999999999987 9999999999
Q ss_pred eeEEEe--cc------------------eEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechh
Q psy1758 1306 VIFKTL--NG------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSR 1365 (1527)
Q Consensus 1306 V~yre~--~g------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~ 1365 (1527)
|+|||+ +| .+||||++++|.+|+||+|+||++|++|||++++|++.+ ++++|+|++|++
T Consensus 370 V~yreti~~g~~~~~~~p~~~p~~~~~~~llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~~-~~~~i~~~~P~~ 448 (599)
T 3cb4_D 370 VVYEVETTSREVIYVDSPSKLPAVNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHG-NQVALTYEIPMA 448 (599)
T ss_dssp ECEEEEESSSCEEEESSGGGSCCGGGEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCT-TEEEEEEEEEHH
T ss_pred EEEEEEecCCceEEecChhhCCCccccchhhccceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEecC-CeEEEEEEecHH
Confidence 999994 66 799999999999999999999999999999999999975 599999999999
Q ss_pred hh-cChHHHHccccceeEEEEeEecceeeccccccccccccccceeecCCCchhHHHHHH--HHhhcCcccccCcccc
Q psy1758 1366 GL-IGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLW--KLQDRGRLFINHNDLV 1440 (1527)
Q Consensus 1366 ~l-~g~~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i~~~~~g~li~~~~g~~~~~~l~--~~~~rG~~fv~~~~~v 1440 (1527)
|| +||+++|+|+|+|+|+|+|+|+||+|++ .+ +-.++++++..+|+|+.+| +++.||+.+|..-.++
T Consensus 449 e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~~---~~-----~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (599)
T 3cb4_D 449 EVVLDFFDRLKSTSRGYASLDYNFKRFQASD---MV-----RVDVLINGERVDALALITHRDNSQNRGRELVEKMKDL 518 (599)
T ss_dssp HHHTTTHHHHHHHTTSCCEEEEEEEEEEECC---EE-----EEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcCCcEEEEEEEecCceEec---cc-----ccccccCCcEecccceeccHHHHHHHHHHHHHHHHhh
Confidence 99 6999999999999999999999999986 23 4456777778899999999 4889999888765543
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-76 Score=759.63 Aligned_cols=453 Identities=29% Similarity=0.432 Sum_probs=414.6
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCccccccccc--ceecchhhhhcccceeEeeeeEEEEecC-------eEEE
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNG-------TRIN 988 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~-------~~in 988 (1527)
+.+++|||+|+||+|||||||+++|++.++.+.+.+.++ .+++|+.+.|+++|+|+.+....+.|++ +.+|
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 356789999999999999999999999888877665543 3789999999999999999999999988 9999
Q ss_pred EEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh
Q psy1758 989 IIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 1068 (1527)
Q Consensus 989 iiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l 1068 (1527)
|||||||.||..++.++++.+|++|+|||+++|++.||..+|+.+...++|+++|+||+|+..++++++++++++.+...
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~~ 165 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGAN 165 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988998888765321
Q ss_pred ---------------------------------ccc----c---------------------------------------
Q psy1758 1069 ---------------------------------CAT----E--------------------------------------- 1072 (1527)
Q Consensus 1069 ---------------------------------~~~----~--------------------------------------- 1072 (1527)
+.. +
T Consensus 166 ~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~ 245 (704)
T 2rdo_7 166 PVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTE 245 (704)
T ss_pred ceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCH
Confidence 000 0
Q ss_pred ------------cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC--------------------CCCC
Q psy1758 1073 ------------EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD--------------------NSNN 1120 (1527)
Q Consensus 1073 ------------~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~--------------------~~~~ 1120 (1527)
...-+|++++||+++. |+++||++|++++|+|.. ++++
T Consensus 246 ~~l~~~l~~~~~~~~~~Pv~~gSa~~~~----------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (704)
T 2rdo_7 246 AEIKGALRQRVLNNEIILVTCGSAFKNK----------GVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDE 315 (704)
T ss_pred HHHHHHHHHHHHhCCeeEEEEeecccCc----------cHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCC
Confidence 0012699999999998 999999999999999854 2578
Q ss_pred CceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceec
Q psy1758 1121 PLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEI 1200 (1527)
Q Consensus 1121 p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~ 1200 (1527)
||+++|||+++|++.|+++++||+||+|++||.|++.+. + ...+|++|+.++|.++.++++|.|||||+++|++++
T Consensus 316 p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~--~--~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~ 391 (704)
T 2rdo_7 316 PFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVK--A--ARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDV 391 (704)
T ss_pred ceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCC--C--cEEEeceEEEEeCCCceEcceeCCCCEEEEeCcccC
Confidence 999999999999999999999999999999999998765 2 457999999999999999999999999999999999
Q ss_pred ccCCeeeCCCCCCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEec
Q psy1758 1201 CIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGR 1280 (1527)
Q Consensus 1201 ~iGdTi~~~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~ 1280 (1527)
.+|||||+.+.+.+++++++++|++++++.|.++. +.++|.++|.|+.++||+|++++++++++ ++++||
T Consensus 392 ~~GdTl~~~~~~~~l~~~~~~~Pv~~~ai~p~~~~---------d~~kl~~~L~~L~~eDp~l~v~~~~etge-~il~g~ 461 (704)
T 2rdo_7 392 TTGDTLCDPDAPIILERMEFPEPVISIAVEPKTKA---------DQEKMGLALGRLAKEDPSFRVWTDEESNQ-TIIAGM 461 (704)
T ss_pred ccCCEEeCCCcccccCCCCCCCceEEEEEEECChH---------HHHHHHHHHHHHHhhCCEEEEEEcCCCCc-EEEEeC
Confidence 99999999988889999999999999999987652 36899999999999999999999999999 999999
Q ss_pred chhHHHHHHHHHHhc-CcEEEEecCeeeEEEe----c--------------------------------c----------
Q psy1758 1281 GELHLTILIENMRRE-GYELSVSRPRVIFKTL----N--------------------------------G---------- 1313 (1527)
Q Consensus 1281 GelhL~vl~e~lrre-g~ev~vs~P~V~yre~----~--------------------------------g---------- 1313 (1527)
|||||+|+++||||+ |+|+.+++|+|+|||+ . |
T Consensus 462 GelhLei~~~rL~~~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~~~~g~g~~f~~~~~ 541 (704)
T 2rdo_7 462 GELHLDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIK 541 (704)
T ss_pred CHHHHHHHHHHHHHHhCceEEEeCCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCCCCCCCCcEEEEecc
Confidence 999999999999976 9999999999999993 1 1
Q ss_pred ---------------------------------------------------------------------eEeeeeEEEEE
Q psy1758 1314 ---------------------------------------------------------------------ELYEPYENLFV 1324 (1527)
Q Consensus 1314 ---------------------------------------------------------------------~llEP~~~~~i 1324 (1527)
.+||||+.++|
T Consensus 542 g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i 621 (704)
T 2rdo_7 542 GGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEV 621 (704)
T ss_pred CCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEeccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeeeeEEEEEE
Confidence 58999999999
Q ss_pred EecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1325 DIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1325 ~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
.||++|+|+||++|++|||++++|++.+ +++.|+|++|++|++||.++|+|+|+|+|+|+++|+||++++
T Consensus 622 ~~p~~~~G~v~~~l~~rrG~i~~~~~~~-~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~ 691 (704)
T 2rdo_7 622 ETPEENTGDVIGDLSRRRGMLKGQESEV-TGVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAP 691 (704)
T ss_pred EeCHHHHhHHHHHHHhCCceEeCceecC-CeEEEEEEecHHHHhhHHHHhHhhcCCceEEEEEeCcceECC
Confidence 9999999999999999999999999975 789999999999999999999999999999999999999998
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-75 Score=752.48 Aligned_cols=453 Identities=26% Similarity=0.424 Sum_probs=392.3
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCccccccccc--ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCC
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH 995 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh 995 (1527)
+.++++||+|+||+|||||||+++|++.++.+.+.+.+. .+++|+.+.|+++|+|+.+....+.|++++++|||||||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 456789999999999999999999998877776554443 368899999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh-------
Q psy1758 996 ADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL------- 1068 (1527)
Q Consensus 996 ~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l------- 1068 (1527)
.+|..++.++++.+|++|+|+|+++|++.|+..+|..+.+.++|+++|+||+|+..+++.++++++++.+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~~ip 165 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLP 165 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEESEEE
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCceeEEee
Confidence 9999999999999999999999999999999999999999999999999999999988888888888765320
Q ss_pred ---------------------c-ccc-------------------------------c----------------------
Q psy1758 1069 ---------------------C-ATE-------------------------------E---------------------- 1073 (1527)
Q Consensus 1069 ---------------------~-~~~-------------------------------~---------------------- 1073 (1527)
. ... +
T Consensus 166 isa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~ 245 (693)
T 2xex_A 166 IGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIR 245 (693)
T ss_dssp ECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred cccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHHHH
Confidence 0 000 0
Q ss_pred -----ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC--------------------CCCCCceeEEEe
Q psy1758 1074 -----QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD--------------------NSNNPLQLQIIS 1128 (1527)
Q Consensus 1074 -----~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~--------------------~~~~p~~~~V~~ 1128 (1527)
..-+|++++||++|. |+++||++|.+++|+|.. ++++||+++|||
T Consensus 246 ~~~~~~~~~Pv~~gSA~~~~----------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK 315 (693)
T 2xex_A 246 QATTNVEFYPVLCGTAFKNK----------GVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFK 315 (693)
T ss_dssp HHHHTTSCEEEEECBTTTTB----------SHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEE
T ss_pred HHHHhCCeeeEEEeecccCc----------CHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEE
Confidence 001689999999998 999999999999999954 367899999999
Q ss_pred eeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeC
Q psy1758 1129 LEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICD 1208 (1527)
Q Consensus 1129 ~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~ 1208 (1527)
+++|++.|+++++||+||+|++||+|++... + ...+|++|+.++|.+++++++|.|||||+++|++++.+|||||+
T Consensus 316 ~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~--~--~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdTl~~ 391 (693)
T 2xex_A 316 VMTDPYVGKLTFFRVYSGTMTSGSYVKNSTK--G--KRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCG 391 (693)
T ss_dssp EEEETTTEEEEEEEEEESEEETTEEEEETTT--T--EEEEECCEEEECSSCEEECSEEETTCEEEEESCSSCCTTCEEEE
T ss_pred eeecCCCceEEEEEEEeeeEecCCEEEecCC--C--ceEEeceEEEEeCCCceEccccCcCCEEEEeCcccCccCCEEec
Confidence 9999999999999999999999999998754 2 46799999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHH
Q psy1758 1209 PSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTIL 1288 (1527)
Q Consensus 1209 ~~~~~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl 1288 (1527)
.+.+.++|++++++|++++++.|.++. +.++|.++|.++.++||+|++++++++++ ++++|||||||+|+
T Consensus 392 ~~~~~~~~~~~~~~Pv~~~av~p~~~~---------d~~kl~~~L~~l~~eDp~l~~~~~~et~e-~il~g~Gelhlei~ 461 (693)
T 2xex_A 392 EKNDIILESMEFPEPVIHLSVEPKSKA---------DQDKMTQALVKLQEEDPTFHAHTDEETGQ-VIIGGMGELHLDIL 461 (693)
T ss_dssp TTCCEECCCCSSCSCSEEEEEEESSHH---------HHHHHHHHHHHHHHHCTTCEEEC---CCC-EEEEESSHHHHHHH
T ss_pred CCCccccCCcCCCCceEEEEEEeCCch---------hHHHHHHHHHHHHhhCCeEEEEEcCCCCc-EEEEeCCHHHHHHH
Confidence 888888999999999999999987642 46899999999999999999999999999 99999999999999
Q ss_pred HHHHHhc-CcEEEEecCeeeEEEe-c------------------------------------------------------
Q psy1758 1289 IENMRRE-GYELSVSRPRVIFKTL-N------------------------------------------------------ 1312 (1527)
Q Consensus 1289 ~e~lrre-g~ev~vs~P~V~yre~-~------------------------------------------------------ 1312 (1527)
++||||+ |+|+.+++|+|+|||+ .
T Consensus 462 ~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v 541 (693)
T 2xex_A 462 VDRMKKEFNVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPREYIPSV 541 (693)
T ss_dssp HHHHHHHSCCCEEECCCEECCEEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECCTTCCCEEEECCCTTSSCGGGHHHH
T ss_pred HHHHHHHhCceEEEeCCeEEEEEEeccccceeEeeccccCCCCceEEEEEEEEECCCCCCCEEEecCCCCcCCHHHHHHH
Confidence 9999976 9999999999999994 0
Q ss_pred --------------------------------------------------------ceEeeeeEEEEEEecCcchHHHHH
Q psy1758 1313 --------------------------------------------------------GELYEPYENLFVDIEEINQGIIMQ 1336 (1527)
Q Consensus 1313 --------------------------------------------------------g~llEP~~~~~i~vp~e~~G~v~~ 1336 (1527)
..+||||++++|.||++|+|+||+
T Consensus 542 ~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~ 621 (693)
T 2xex_A 542 EAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMG 621 (693)
T ss_dssp HHHHHHHHHTCSSSSCCBCSEEEEEEEEECCTTTCCHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHH
T ss_pred HHHHHHHHhcCCccCCceeeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHH
Confidence 158999999999999999999999
Q ss_pred HHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1337 KLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1337 ~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
+|++|||++++|++.+ ++++|+|++|++||+||.++|+|+|+|+|+|+++|+||++++
T Consensus 622 ~l~~rrG~i~~~~~~~-~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~ 679 (693)
T 2xex_A 622 DVTSRRGRVDGMEPRG-NAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVP 679 (693)
T ss_dssp HHHHTTCEEEEEEEET-TEEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECC
T ss_pred HHHhCCcEeecccccC-CeEEEEEEeCHHHHHhHHHHhHHhcCCceEEEEEeCcceECC
Confidence 9999999999999975 789999999999999999999999999999999999999998
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-75 Score=752.05 Aligned_cols=453 Identities=27% Similarity=0.422 Sum_probs=350.9
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCccccccccc--ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCC
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH 995 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh 995 (1527)
+.++++||+|+||+|||||||+++|++.++.+.+.+.+. .+++|+.+.|+++|+|+.+....+.|+++.++|||||||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~ 87 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGH 87 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCc
Confidence 346789999999999999999999999888776655543 378999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh-------
Q psy1758 996 ADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL------- 1068 (1527)
Q Consensus 996 ~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l------- 1068 (1527)
.+|..++.++++.+|++|+|||+++|.+.||..+|..+.+.++|.++|+||+|+..++++++++++.+.+...
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~~P 167 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLP 167 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEEE
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCccceecc
Confidence 9999999999999999999999999999999999999999999999999999999988888888887765310
Q ss_pred -------------------------ccc----------------------------cc----------------------
Q psy1758 1069 -------------------------CAT----------------------------EE---------------------- 1073 (1527)
Q Consensus 1069 -------------------------~~~----------------------------~~---------------------- 1073 (1527)
+.. ++
T Consensus 168 i~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~~ 247 (691)
T 1dar_A 168 IGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIR 247 (691)
T ss_dssp ESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred ccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHHH
Confidence 000 00
Q ss_pred -----ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC------------------CCCCCceeEEEeee
Q psy1758 1074 -----QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD------------------NSNNPLQLQIISLE 1130 (1527)
Q Consensus 1074 -----~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~------------------~~~~p~~~~V~~~~ 1130 (1527)
..-+|++++||++|. |+++||++|++++|+|.. ++++||+++|||+.
T Consensus 248 ~~~~~~~~~Pv~~gSA~~~~----------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~ 317 (691)
T 1dar_A 248 KGTIDLKITPVFLGSALKNK----------GVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIM 317 (691)
T ss_dssp HHHHTTSCEEEEECBGGGTB----------SHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEE
T ss_pred HHHHhCcEeEEEEeecccCc----------CHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEE
Confidence 001699999999998 999999999999999964 36789999999999
Q ss_pred ccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCC
Q psy1758 1131 YSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPS 1210 (1527)
Q Consensus 1131 ~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~ 1210 (1527)
+|++.|+++++||+||+|++||.|++.+. ....+|++|+.++|.++.++++|.|||||+++|++++.+|||||+.+
T Consensus 318 ~d~~~G~~~~~RV~sG~l~~g~~v~~~~~----~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~ 393 (691)
T 1dar_A 318 ADPYVGRLTFIRVYSGTLTSGSYVYNTTK----GRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGED 393 (691)
T ss_dssp EETTTEEEEEEEEEESEEESSCEEEETTT----TEEEECCEEEEECSSCEEEESEEETTCEEEEECCSSCCTTCEEEETT
T ss_pred EcCCCCcEEEEEEeeeeEecCCEEEecCC----CcEEEEceEEEEeCCCceEcceecCCCEEEEeCcccCccCCEEecCC
Confidence 99999999999999999999999998755 24579999999999999999999999999999999999999999988
Q ss_pred CC-CCCCCCccCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHH
Q psy1758 1211 KP-NGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILI 1289 (1527)
Q Consensus 1211 ~~-~~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~ 1289 (1527)
.+ .+++++++++|++++++.|+++. +.++|.++|.|+.++||+|+|++++++++ ++++|||||||+|++
T Consensus 394 ~~~~~l~~~~~~~P~~~~ai~p~~~~---------d~~kl~~~L~~l~~eDp~l~v~~~~et~e-~i~~g~Gelhlei~~ 463 (691)
T 1dar_A 394 APRVILESIEVPEPVIDVAIEPKTKA---------DQEKLSQALARLAEEDPTFRVSTHPETGQ-TIISGMGELHLEIIV 463 (691)
T ss_dssp CCCCBCC-----------------------------------------CCCCSCEEEC-----C-EEEEESCCC------
T ss_pred CcccccCCCCCCCceEEEEEEECCch---------hHHHHHHHHHHHHhhCCeEEEEEcCCCCc-EEEEeCCHHHHHHHH
Confidence 88 88999999999999999987652 35789999999999999999999999999 999999999999999
Q ss_pred HHHHhc-CcEEEEecCeeeEEEe-c-------------------------------------------------------
Q psy1758 1290 ENMRRE-GYELSVSRPRVIFKTL-N------------------------------------------------------- 1312 (1527)
Q Consensus 1290 e~lrre-g~ev~vs~P~V~yre~-~------------------------------------------------------- 1312 (1527)
+||||+ |+|+.+++|+|+|||+ .
T Consensus 464 ~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~ 543 (691)
T 1dar_A 464 DRLKREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQ 543 (691)
T ss_dssp ---CCCEEEBTTTBCCCBCCEEECSSCEEEEEEEEECCSSSCEEEEEEEEEEECCTTCCEEEEECCCTTSSCTTTHHHHH
T ss_pred HHHHHhhCceEEEeCCeEEEEEeeccceeeeeeeccccCCCCceEEEEEEEEECCCCCCCEEeecccCCcCcHHHHHHHH
Confidence 999976 9999999999999994 0
Q ss_pred -------------------------------------------------------ceEeeeeEEEEEEecCcchHHHHHH
Q psy1758 1313 -------------------------------------------------------GELYEPYENLFVDIEEINQGIIMQK 1337 (1527)
Q Consensus 1313 -------------------------------------------------------g~llEP~~~~~i~vp~e~~G~v~~~ 1337 (1527)
..+||||++++|.||++|+|+||++
T Consensus 544 ~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~ 623 (691)
T 1dar_A 544 KGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGD 623 (691)
T ss_dssp HHHHHHTTSCTTTSCCBCSEEEEEEEECCCTTTBCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHH
T ss_pred HHHHHHHhcCCccCCceeeEEEEEEeeeccccCcchHHHHHHHHHHHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHH
Confidence 1589999999999999999999999
Q ss_pred HhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1338 LNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1338 l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|++|||++++|++.+ ++++|+|++|++||+||.++|+|+|+|+|+|+++|+||++++
T Consensus 624 l~~rrG~i~~~~~~~-~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~ 680 (691)
T 1dar_A 624 LNARRGQILGMEPRG-NAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVP 680 (691)
T ss_dssp HHHTTCCEEEEEEET-TEEEEEEEEETTTSSSHHHHHHHHTTTCCEEEEEEEEEEECC
T ss_pred HHHCCceeecceecC-CeEEEEEEecHHHHhhHHHHHHHhcCCceEEEEEeCcceECC
Confidence 999999999999975 799999999999999999999999999999999999999998
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-71 Score=717.54 Aligned_cols=449 Identities=22% Similarity=0.369 Sum_probs=408.8
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccc--cceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNI--NARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~--~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~ 996 (1527)
..+.++|+|+||+|||||||+++|++..+.+...+.+ ...++|..+.|+++|+|+.+....+.|+++.+||||||||.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 4567999999999999999999999887766555544 23678999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh--------
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL-------- 1068 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l-------- 1068 (1527)
+|..++.++++.+|++++|+|+++|+.+||+.+|+.+...++|+++|+||+|+. ++.+++.+++.+.+...
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~~~~~~~~Pi~ 164 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLGPILPIDLPLY 164 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHCSEEECEEEEE
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhCCcceEEeeec
Confidence 999999999999999999999999999999999999999999999999999999 88888888887765400
Q ss_pred ---------------------c---------------------------cccc---------------------------
Q psy1758 1069 ---------------------C---------------------------ATEE--------------------------- 1073 (1527)
Q Consensus 1069 ---------------------~---------------------------~~~~--------------------------- 1073 (1527)
+ ..++
T Consensus 165 ~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~~ 244 (665)
T 2dy1_A 165 EGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRR 244 (665)
T ss_dssp ETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred CCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Confidence 0 0000
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCC-CCCCceeEEEeeeccccCceEEEEEeecCccccCC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN-SNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQ 1152 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~-~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd 1152 (1527)
..-+|++++||++|. |+++||++|.+++|+|... .++||+++||++.+|++.|+++++||+||+|++||
T Consensus 245 ~~~~pv~~~SA~~~~----------Gv~~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~ 314 (665)
T 2dy1_A 245 GLLYPVALASGEREI----------GVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGD 314 (665)
T ss_dssp TSCEEEEECBTTTTB----------SHHHHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTE
T ss_pred CCeeEEEEeecccCc----------CHHHHHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecCC
Confidence 011699999999998 9999999999999999754 68899999999999999999999999999999999
Q ss_pred EEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCC--CCCCCCccCCCceeEEEE
Q psy1758 1153 DVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKP--NGLPMLNIDEPTLTINFM 1230 (1527)
Q Consensus 1153 ~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~--~~l~~~~~~~P~l~~~~~ 1230 (1527)
.|++.+ ...+|++|+.++|.++.++++|.|||||+++|++++.+|||||+.+.+ .++|++++++|++++++.
T Consensus 315 ~v~~~~------~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~~~~~i~ 388 (665)
T 2dy1_A 315 SLQSEA------GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFARLPDPNVPVALH 388 (665)
T ss_dssp EEBCTT------SCEEESSEEEEETTEEEEESCEETTCEEEESSCTTCCTTCEEESSSCCCGGGSCCCCCCCCCEEEEEE
T ss_pred EEEcCC------CeEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccCccCCEEecCCCccccccCCCCCCCceEEEEEE
Confidence 998643 357999999999999999999999999999999999999999998887 789999999999999999
Q ss_pred ecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhcCcEEEEecCeeeEEE
Q psy1758 1231 VNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKT 1310 (1527)
Q Consensus 1231 ~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrreg~ev~vs~P~V~yre 1310 (1527)
|+++ -+.++|.++|.|+.++||+|+|++++++++ ++++|||||||+|+++|||++|+|+.+++|+|+|||
T Consensus 389 p~~~---------~d~~kl~~~L~~l~~edp~l~v~~~~et~e-~i~~g~Gelhlei~~~rl~~~~v~v~~~~p~V~yrE 458 (665)
T 2dy1_A 389 PKGR---------TDEARLGEALRKLLEEDPSLKLERQEETGE-LLLWGHGELHLATAKERLQDYGVEVEFSVPKVPYRE 458 (665)
T ss_dssp ESSH---------HHHHHHHHHHHHHHHHCTTSEEEECTTTCC-EEEEESSHHHHHHHHHHHHHTTCCEEEECCCCCCEE
T ss_pred ECCh---------hhHHHHHHHHHHHHHhCCeEEEEEcCCCCC-EEEEecCHHHHHHHHHHHHHCCceEEEeCCEEEEEE
Confidence 8763 146899999999999999999999999999 999999999999999999977999999999999999
Q ss_pred e-c-----------------------------------------------------------------------------
Q psy1758 1311 L-N----------------------------------------------------------------------------- 1312 (1527)
Q Consensus 1311 ~-~----------------------------------------------------------------------------- 1312 (1527)
+ .
T Consensus 459 ti~~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~ 538 (665)
T 2dy1_A 459 TIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPASEYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPVMGFKAIVY 538 (665)
T ss_dssp EESSCEEEEEEEEEEETTEEEEEEEEEEEEECSSCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCCBCSEEEEEE
T ss_pred eeccceeeeeecccccCCCcceEEEEEEEEECCCCEEeeeccCCcchHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEE
Confidence 4 0
Q ss_pred -c-----------------------------eEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEe
Q psy1758 1313 -G-----------------------------ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRI 1362 (1527)
Q Consensus 1313 -g-----------------------------~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~v 1362 (1527)
| .+||||++++|.||++|+|+||++|++|||++++|++.+ ++++|+|++
T Consensus 539 dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~-~~~~i~a~~ 617 (665)
T 2dy1_A 539 NGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEG-ALSVVHAEV 617 (665)
T ss_dssp EEECCTTTBCHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET-TEEEEEEEE
T ss_pred eeeccCCCCCHHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEecC-CeEEEEEEE
Confidence 0 489999999999999999999999999999999999975 799999999
Q ss_pred chhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1363 PSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1363 P~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|++|++||.++|+|+|+|+|+|+++|+||+|++
T Consensus 618 P~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 650 (665)
T 2dy1_A 618 PLAEVLEYYKALPGLTGGAGAYTLEFSHYAEVP 650 (665)
T ss_dssp EGGGCTTHHHHHHHHHTTCCEEEEEEEEEEECC
T ss_pred CHHHHhhHHHHhHhhcCCcEEEEEEeCceeECC
Confidence 999999999999999999999999999999998
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-69 Score=711.79 Aligned_cols=466 Identities=27% Similarity=0.396 Sum_probs=383.9
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec---------------
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--------------- 983 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--------------- 983 (1527)
.+++|||+|+||+|||||||+++|++.++.+.+......+++|+.+.|++||+|+.+....+.|+
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 45789999999999999999999999988776655444578999999999999999999998886
Q ss_pred -CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCC----CChh---
Q psy1758 984 -GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN----ARPE--- 1055 (1527)
Q Consensus 984 -~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~----a~~~--- 1055 (1527)
++.+||||||||.||..++.++++.+|++|+|||+++|++.||..+|..+...++|+++|+||+|+.. .+++
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e~~ 175 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLY 175 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999863 2333
Q ss_pred ----hhHHHHHHHHhhhcc---c---ccccCCcEEEeccccCCcCC--------------------------C---c---
Q psy1758 1056 ----WVVDATFDLFDKLCA---T---EEQLDFPVIYTSALHGYANE--------------------------N---S--- 1093 (1527)
Q Consensus 1056 ----~v~~~~~~~~~~l~~---~---~~~~~~pvi~~SA~~g~~~~--------------------------~---~--- 1093 (1527)
..++++...+..... . ..+...++.++||++||+.. . .
T Consensus 176 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~~~ 255 (842)
T 1n0u_A 176 QTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTK 255 (842)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETTTT
T ss_pred HHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCCCC
Confidence 334444444322111 0 11223468889998886410 0 0
Q ss_pred -------cc-c-----------------------------------cCC--------------------------ChhHH
Q psy1758 1094 -------KA-R-----------------------------------QGN--------------------------MIPLF 1104 (1527)
Q Consensus 1094 -------~~-~-----------------------------------~~g--------------------------i~~Ll 1104 (1527)
.. . ..| +++||
T Consensus 256 ~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~LL 335 (842)
T 1n0u_A 256 KWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALL 335 (842)
T ss_dssp EEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHHHH
T ss_pred eEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHHHH
Confidence 00 0 011 27899
Q ss_pred HHHHhhcCCCC-------------------------CCCCCCceeEEEeeeccccCce-EEEEEeecCccccCCEEEEec
Q psy1758 1105 EAILKYVPVHK-------------------------DNSNNPLQLQIISLEYSSYLGK-IGIGRILSGRIKSLQDVVIMN 1158 (1527)
Q Consensus 1105 ~~i~~~lp~p~-------------------------~~~~~p~~~~V~~~~~d~~~G~-v~~grV~sG~lk~Gd~v~~~~ 1158 (1527)
++|++++|+|. +++++||+++|||+.++++.|+ ++|+||+||+|++||.|++++
T Consensus 336 d~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~ 415 (842)
T 1n0u_A 336 EMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQG 415 (842)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEEC
T ss_pred HHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEecc
Confidence 99999999995 3678999999999999999996 999999999999999998875
Q ss_pred CC--CCCcC---cceeeeEEEeecCceeEeeeeecCCEEEEecceecccC-CeeeCCCCCCCCCCCccC-CCceeEEEEe
Q psy1758 1159 GP--DDKPN---KAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIG-STICDPSKPNGLPMLNID-EPTLTINFMV 1231 (1527)
Q Consensus 1159 ~~--~g~~~---~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iG-dTi~~~~~~~~l~~~~~~-~P~l~~~~~~ 1231 (1527)
.+ .++.. .+||++|+.++|.+++++++|.|||||+|+|++++.+| +|||+.+.+.+++++.++ +|++++++.|
T Consensus 416 ~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~~~~l~~~~~~~~Pv~~~avep 495 (842)
T 1n0u_A 416 PNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEV 495 (842)
T ss_dssp TTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTTCCCBCCCCCCCSCCEEEEEEE
T ss_pred ccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCCCccccccCCCCCCceEEEEEEE
Confidence 42 12223 47999999999999999999999999999999998775 799998888889988888 5999999998
Q ss_pred cCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhc--CcEEEEecCeeeEE
Q psy1758 1232 NNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE--GYELSVSRPRVIFK 1309 (1527)
Q Consensus 1232 ~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrre--g~ev~vs~P~V~yr 1309 (1527)
.+. .+.+||.++|.++.++||+|+|+++ ++++ ++++|||||||+|+++||||+ |+|+.+++|+|+||
T Consensus 496 ~~~---------~d~~kl~~~L~kL~~eDp~l~v~~~-etge-~il~g~GelHLei~~~rL~~~f~~vev~~~~P~V~yr 564 (842)
T 1n0u_A 496 KNA---------NDLPKLVEGLKRLSKSDPCVLTYMS-ESGE-HIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYR 564 (842)
T ss_dssp SSG---------GGHHHHHHHHHHHHHHCTTCEEEEC-TTSC-EEEEESSHHHHHHHHHHHHHTTSCSCEEEECCCCCCE
T ss_pred CCH---------HHHHHHHHHHHHHHHhCCcEEEEEc-CCCC-EEEEeccHHHHHHHHHHHHHHhcCCceEecCcEEEEE
Confidence 653 2568999999999999999999998 7899 999999999999999999865 99999999999999
Q ss_pred Ee------c-----------------------------------------------------------------------
Q psy1758 1310 TL------N----------------------------------------------------------------------- 1312 (1527)
Q Consensus 1310 e~------~----------------------------------------------------------------------- 1312 (1527)
|+ .
T Consensus 565 ETi~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~~~p~~~~~~ 644 (842)
T 1n0u_A 565 ETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPN 644 (842)
T ss_dssp EEESSCCSSCEEEECTTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEESSTTTSSE
T ss_pred EeeccccccceeeccCCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceeeeccCCCCCc
Confidence 94 0
Q ss_pred -------c----------------------------------------------------------------------eE
Q psy1758 1313 -------G----------------------------------------------------------------------EL 1315 (1527)
Q Consensus 1313 -------g----------------------------------------------------------------------~l 1315 (1527)
| .|
T Consensus 645 ~f~~~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~a~~~a~p~L 724 (842)
T 1n0u_A 645 LVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKI 724 (842)
T ss_dssp EEEECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHHHHHSCEEE
T ss_pred EEEecCCCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHHHHHhCCCeE
Confidence 1 48
Q ss_pred eeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCC-cEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeec
Q psy1758 1316 YEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEK-ERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPF 1394 (1527)
Q Consensus 1316 lEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~-~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~ 1394 (1527)
|||||.++|.||++|+|+||++|++|||++++|++.++ ++..|++++|++|++||.++|+|+|+|+|+|+++|+||+++
T Consensus 725 LEPi~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~~F~~y~~v 804 (842)
T 1n0u_A 725 QEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTL 804 (842)
T ss_dssp EEEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEEC
T ss_pred EeeEEEEEEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEEEEeccceeC
Confidence 99999999999999999999999999999999998643 57999999999999999999999999999999999999999
Q ss_pred c
Q psy1758 1395 Y 1395 (1527)
Q Consensus 1395 ~ 1395 (1527)
+
T Consensus 805 p 805 (842)
T 1n0u_A 805 G 805 (842)
T ss_dssp C
T ss_pred C
Confidence 8
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-70 Score=692.44 Aligned_cols=454 Identities=32% Similarity=0.489 Sum_probs=375.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC------------------CeEEEEEeCCChhh
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN------------------HGSITFLDTPGHEA 128 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~------------------~~~i~~iDTPG~e~ 128 (1527)
.|+++|+++||+|||||||+++|++..+...+.+++|++++...+.+. ...++|||||||++
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 478999999999999999999999877665555688888776666542 11599999999999
Q ss_pred HHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcc-h--------------hHH------
Q psy1758 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDI-N--------------LDR------ 187 (1527)
Q Consensus 129 f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~-~--------------~~~------ 187 (1527)
|..++.++++.+|++|+|+|+++|+++|+.+.|..+...++|+++|+||+|+... . ...
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~ 162 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD 162 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999642 1 011
Q ss_pred -----HHHHHhhhccccc------ccCCCCcEEEeeccCCCChhHHHHHHHHHHHH-H--hhcCCCCCCCceEEEEEeec
Q psy1758 188 -----IKQDLISEQVIPE------EYGGASPFISISAKTGVGINKLLENISLQAEI-L--ELKAPVTTPAKGVIIESRLD 253 (1527)
Q Consensus 188 -----~~~~l~~~~~~~~------~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~-~--~~~~~~~~p~~~~v~~~~~~ 253 (1527)
....+.+.....+ .++..+|++++||++|.|+++|+++|...... . .+..+++.|+.+.|++++.+
T Consensus 163 e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d 242 (594)
T 1g7s_A 163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEE 242 (594)
T ss_dssp HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccchhhhccccCCCceeEEEEEEEe
Confidence 1112222222111 22455799999999999999999999865532 2 23445678999999999999
Q ss_pred CCCceEEEEEeeccEEEeccEEEecceee----eEeEeecc-----------CCceeeecCCCcce--EecCCCCCCCCC
Q psy1758 254 KGKGPVATVLIQSGTLRCSDIVVAGASYG----RIRSMLNE-----------NGKNILEAGPSIPV--EIQGLTKVPFSG 316 (1527)
Q Consensus 254 ~~~G~v~~~~v~~G~l~~gd~vv~g~~~~----kVr~i~~~-----------~g~~v~~a~~~~~v--~I~gl~~~~~~G 316 (1527)
++.|++++++|++|+|++||.|++++..+ +|++|+.. ++.++++|.|+.++ .+.||+.+ .+|
T Consensus 243 ~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~-~~G 321 (594)
T 1g7s_A 243 TGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDV-MAG 321 (594)
T ss_dssp TTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTB-CTT
T ss_pred CCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEEcccCCC-CCC
Confidence 99999999999999999999999987655 99999764 34567888855444 45567776 899
Q ss_pred CeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceee
Q psy1758 317 EELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKI 396 (1527)
Q Consensus 317 ~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i 396 (1527)
|.|.++.+++++++... ..++++ .-..+.+++|||||++||+|||.++|.++ ++
T Consensus 322 d~l~~~~~~~~~~~~~~----------------~~~~~~-----~~~~~~~~~~vkad~~gs~eal~~~l~~~-----~~ 375 (594)
T 1g7s_A 322 SPLRVVTDPEKVREEIL----------------SEIEDI-----KIDTDEAGVVVKADTLGSLEAVVKILRDM-----YV 375 (594)
T ss_dssp CEEEECSSHHHHHHHHH----------------HHHHTT-----SCBCSSSCCEEEESSHHHHHHHHHHHHHT-----TC
T ss_pred CEEEecCCHHHHHHHHH----------------HHHHhc-----ccccccccEEEEeCCCCCHHHHHHHHHhC-----CC
Confidence 99999998844432110 011111 11246789999999999999999999998 79
Q ss_pred eEEeeccCcCChhhHHHHHhc------CCEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHHHHHHHHHHhccCCcceee
Q psy1758 397 QVIHNAVGNINESDINLAIAS------KAIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLIPLEKKE 470 (1527)
Q Consensus 397 ~iv~~~vG~it~~Dv~~A~~~------~a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~~~~l~~~~~e 470 (1527)
+|++++||+||++||.+|+++ +|+||||||+++++++++|++.||+|++|||||+|+|+++++|+++++|++++
T Consensus 376 ~v~~~~vg~i~~~dv~~a~~~~~~~~~~a~i~~fnv~~~~~~~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~~~~~~~~~ 455 (594)
T 1g7s_A 376 PIKVADIGDVSRRDVVNAGIALQEDRVYGAIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIEEEKKKK 455 (594)
T ss_dssp CCSEEEESSBCHHHHHHHHHHHTTCTTSCEEEEESCCBCHHHHHHTSSSSSEEEEESCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEecccCCCCHHHHHHHHhhhccCcCCCEEEEeCCcCCHHHHHHHHHcCCeEEECCHHHHHHHHHHHHhhhccchhhhh
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999998644
Q ss_pred ---eeeEeEEEe----EEEEcCCCCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccccc
Q psy1758 471 ---NLLGLAEIR----QVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLS 543 (1527)
Q Consensus 471 ---~~~g~a~v~----~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~ 543 (1527)
.++|+|+++ ++|+.++ ++||||+|++|++++|+++|+ |+|. |.|+|.||||+|+||+||++|+|||+.+
T Consensus 456 ~~~~~~~~~~~~i~~~~~f~~~~-~~i~g~~v~~G~~~~~~~~~~-~~~~--~~g~i~sl~~~k~~v~~~~~g~e~gi~~ 531 (594)
T 1g7s_A 456 WMEAIIKPASIRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMN-DDGE--TVGTVESMQDKGENLKSASRGQKVAMAI 531 (594)
T ss_dssp HHTTSCCCEEEEEEEEEEEECSS-SEEEEEEEEEEEEETTCEEEC-TTSC--EEEEEEEEEETTEEESEEETTCCEEEEE
T ss_pred hhheeeeeEEEEEecceEEcCCC-CeEEEEEEecCEEecCCeEEe-cCCc--EEEEEehhcccCccccccCCCCEEEEEE
Confidence 577777776 8999888 899999999999999999999 9995 9999999999999999999999999999
Q ss_pred hhh---hhhhh
Q psy1758 544 RIE---NQIQR 551 (1527)
Q Consensus 544 r~~---~~i~~ 551 (1527)
+.+ ++|+.
T Consensus 532 ~~~~~~~~~~~ 542 (594)
T 1g7s_A 532 KDAVYGKTIHE 542 (594)
T ss_dssp ETCCBTTTBCT
T ss_pred eCcccCCCCCC
Confidence 885 56654
|
| >1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-71 Score=629.72 Aligned_cols=263 Identities=44% Similarity=0.744 Sum_probs=243.7
Q ss_pred ccccccccccceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEE
Q psy1758 651 MQFHIKKNKNIIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAI 730 (1527)
Q Consensus 651 ~~~~~~~~~~~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~ 730 (1527)
..-++++.|+.+||||+||||+|||||+|++++|++|+.+|+||+|||||+||||||+|+|+|||+++||+..+|+|+++
T Consensus 13 ~~~~~~~~~~~~~Gil~vdKP~G~TS~dvv~~vr~~l~~kKvGH~GTLDP~AtGvL~i~~G~aTKl~~~l~~~~K~Y~a~ 92 (327)
T 1k8w_A 13 SSGHIEGRHMDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVI 92 (327)
T ss_dssp ---------CCCCEEEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGTHHHHTSCEEEEEE
T ss_pred cccccccccCCCCeEEEEECCCCCCHHHHHHHHHHhhccceeccCCCCCCCCeeEEEEEECHHHhHHHHhccCCcEEEEE
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECccccCCCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEE
Q psy1758 731 IHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKI 810 (1527)
Q Consensus 731 ~~~G~~tdt~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~ 810 (1527)
++||.+|||+|.+|+|++++++ +++.++|+++|++|+|+|+|+||+|||+|+||||||+|||+|++||+++|+++||+|
T Consensus 93 ~~lG~~TdT~D~eG~v~~~~~~-~~t~e~i~~~l~~f~G~i~Q~PP~~SAvKv~GkraYelAR~G~~ve~~~R~v~I~~i 171 (327)
T 1k8w_A 93 ARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYEL 171 (327)
T ss_dssp EEETEEESSSBTTSCEEEECCC-CCCHHHHHHHHHTTSEEEEECCCSSSCCEETTEEHHHHHHTTCCCCCCCEEEEEEEE
T ss_pred EEECCcccCCCCCCCEEeecCC-CCCHHHHHHHHHhccceEEEeCChhheeccCCccHHHHHhCCCcccccceEEEEEEE
Confidence 9999999999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhh---------hhhc-
Q psy1758 811 TIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSE---------YERI- 880 (1527)
Q Consensus 811 ~~~~~~~~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~---------~~~~- 880 (1527)
++++|+.|.++|+|+||+||||||||+|||.+|||+|||++||||++|+|++++|++++++.+... ...+
T Consensus 172 ~ll~~~~~~~~~~v~CskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~F~~~~a~~l~~l~~~~~~~~~~~~~~~~~l~ 251 (327)
T 1k8w_A 172 LFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 251 (327)
T ss_dssp EEEEEETTEEEEEEEECTTCCHHHHHHHHHHHHTSCEEEEEEEEEEETTCCGGGCEEHHHHHHHHHHHHHTTSCTHHHHG
T ss_pred EEEEeeCCEEEEEEEEcCCchHHHHHHHHHHHhCCCeEEEEEEEEEEcCCccccccCHHHHHHHHHhhhcccccchhHHh
Confidence 999999999999999999999999999999999999999999999999999999999999965322 1122
Q ss_pred cccCcccccccccceeeecccccceeccCccccc
Q psy1758 881 SSLIPIDILLSSFGIIYLSDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 881 ~~L~pie~~L~~lP~i~l~d~~~~~i~nG~~i~l 914 (1527)
..|+|++.++.++|.+.++++....+.||+.+..
T Consensus 252 ~~l~p~~~~l~~lp~v~l~~~~~~~l~~G~~l~~ 285 (327)
T 1k8w_A 252 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT 285 (327)
T ss_dssp GGCBCTTGGGTTSCEEEECHHHHHHHTTTCCBCC
T ss_pred hhccCHHHHHccCCEEEeCHHHHHHHhCcCccCC
Confidence 3589999999999999999999999999998865
|
| >1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-70 Score=622.59 Aligned_cols=251 Identities=34% Similarity=0.532 Sum_probs=240.6
Q ss_pred ceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCC
Q psy1758 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 740 (1527)
Q Consensus 661 ~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~ 740 (1527)
++||||+||||+|||||+|++|+|++|+.+|+||+|||||+||||||||+|+|||+++||+..+|+|+++++||.+|||+
T Consensus 1 ~~~Gil~vdKP~G~TS~~vv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~aTKl~~~l~~~~K~Y~a~~~lG~~TdT~ 80 (309)
T 1r3e_A 1 MKHGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLKKVYWVKMRLGLITETF 80 (309)
T ss_dssp CCCEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGGTTSCEEEEEEEEETEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccceecccccCCCCcceeEEEEECHHHhHHHHhCccCcEEEEEEEECCcccCC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeE
Q psy1758 741 DIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYL 820 (1527)
Q Consensus 741 d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~ 820 (1527)
|.+|+|++++++. ++.++|+++|++|+|+|+|+||+|||+|+||||||+|||+|++||+++|+++||++++++|+.|.+
T Consensus 81 D~eG~v~~~~~~~-~t~~~i~~~l~~f~G~i~Q~PP~~SAvKv~GkraYelAR~G~~ve~~~R~v~I~~i~ll~~~~p~~ 159 (309)
T 1r3e_A 81 DITGEVVEERECN-VTEEEIREAIFSFVGEYDQVPPAYSAKKYKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDV 159 (309)
T ss_dssp BTTSCEEEECCCC-CCHHHHHHHHHSSSEEEEECCCSSSSCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEEEEETTEE
T ss_pred CCCCCEEEEecCC-CCHHHHHHHHHhccceEEEeCChHHhcccCCccHHHHHhCCCcccccceEEEEEEEEEEEeeCCEE
Confidence 9999999999886 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcccccccccceeeecc
Q psy1758 821 TLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLSSFGIIYLSD 900 (1527)
Q Consensus 821 ~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~~lP~i~l~d 900 (1527)
+|+|+||+||||||||||||.+|||+|||++|||+++|+|++++|++++++.+. .....|+|++.++.++|.+.+++
T Consensus 160 ~~~v~CskGTYIRsL~~DiG~~Lg~~a~~~~LrRt~~G~f~~~~a~~l~~l~~~---~l~~~l~p~~~~l~~~p~v~l~~ 236 (309)
T 1r3e_A 160 SFRVEVSPGTYIRSLCMDIGYKLGCGATAVELVRESVGPHTIEESLNVFEAAPE---EIENRIIPLEKCLEWLPRVVVHQ 236 (309)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTSCEEEEEEEEEEETTEEGGGCBCTTTSCHH---HHHHHCEEGGGSSTTSCEEECCT
T ss_pred EEEEEECCCchHHHHHHHHHHHhCCCEEEEEEEEEEEcCCcHHHccCHHHHhhc---hhhccccCHHHHhcCCCeEEeCH
Confidence 999999999999999999999999999999999999999999999999998543 11235899999999999999999
Q ss_pred cccceeccCcccccc
Q psy1758 901 LLSKRFLHGQNLFLS 915 (1527)
Q Consensus 901 ~~~~~i~nG~~i~ls 915 (1527)
+....+.||+.+...
T Consensus 237 ~~~~~~~~G~~l~~~ 251 (309)
T 1r3e_A 237 ESTKMILNGSQIHLE 251 (309)
T ss_dssp TTHHHHTTTCCEESS
T ss_pred HHHHHHHCcCcccCC
Confidence 999999999988653
|
| >1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-70 Score=620.61 Aligned_cols=248 Identities=31% Similarity=0.529 Sum_probs=210.3
Q ss_pred eeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCC
Q psy1758 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 741 (1527)
Q Consensus 662 ~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d 741 (1527)
.+|||+||||+||||||||+|+|++|+.+|+||+|||||+||||||||+|+|||+++||+..+|+|+++++||.+|||+|
T Consensus 5 ~~Gil~vdKP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~i~iG~aTKl~~~l~~~~K~Y~~~~~lG~~TdT~D 84 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTED 84 (316)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGTTTSCEEEEEEEEETEEETTSB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccccccccccCCCCCeEEEEEEECHHHhHHHHhCcCCcEEEEEEEECCccCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEe----C
Q psy1758 742 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYT----I 817 (1527)
Q Consensus 742 ~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~----~ 817 (1527)
.+|+|++++++.+++.++|+++|++|+|+|+|+||+|||+|+||||||+|||+|++||+++|+|+||++++++|+ .
T Consensus 85 ~eG~v~~~~~~~~~t~~~i~~~l~~f~G~i~Q~PP~ySAvKv~GkrlYelAR~G~~ve~~~R~v~I~~i~ll~~~~~~~~ 164 (316)
T 1sgv_A 85 AEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQL 164 (316)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHTCEEC----------------------------CCCCCCEEEEEEEEEEEEETTE
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHhccccEEEeCCHHHhcccCChhHHHHHhCCCcccccceEEEEEEEEEEEeeccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986 3
Q ss_pred CeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCcc-ccccccccee
Q psy1758 818 PYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPI-DILLSSFGII 896 (1527)
Q Consensus 818 ~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pi-e~~L~~lP~i 896 (1527)
|.++|+|+|||||||||||||||.+|||+|||++||||++|+|++++|++++++.+.. ..|+|+ +.++.++|.+
T Consensus 165 p~~~~~v~CskGTYIRsLa~DiG~~Lg~~a~~~~LrRt~~G~F~~~~a~tl~~l~~~~-----~~llpi~~~~l~~~p~v 239 (316)
T 1sgv_A 165 IDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERP-----ALSLSLDEACLLMFARR 239 (316)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHHTSCEEEEEEEEEEETTEEGGGCBCHHHHHHSC-----CCSEEHHHHHHHHSEEE
T ss_pred ceEEEEEEECCCCcHHHHHHHHHHHhCCCEEEeeEEEEEEccCcHHHccCHHHHhhch-----hccCCHHHHHHccCCeE
Confidence 7999999999999999999999999999999999999999999999999999996531 257888 6778899999
Q ss_pred eecccccceeccCccccc
Q psy1758 897 YLSDLLSKRFLHGQNLFL 914 (1527)
Q Consensus 897 ~l~d~~~~~i~nG~~i~l 914 (1527)
.++++....+.||+.+..
T Consensus 240 ~l~~~~~~~l~~G~~l~~ 257 (316)
T 1sgv_A 240 DLTAAEASAAANGRSLPA 257 (316)
T ss_dssp ECCHHHHHHHHTTCCCBC
T ss_pred EeCHHHHHHHHCcCcccC
Confidence 999999999999998864
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-69 Score=676.45 Aligned_cols=369 Identities=22% Similarity=0.341 Sum_probs=316.3
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCccccccccc------ceecchhhhhcccceeEeeeeEEEEecCeEEEEEe
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN------ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIID 991 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~------~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiD 991 (1527)
...++|||||+||+|||||||+++||+.+|.+.+.+.++ .++||++++|++|||||.++..++.|++++|||||
T Consensus 27 e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlID 106 (548)
T 3vqt_A 27 EAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLD 106 (548)
T ss_dssp HHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEEC
T ss_pred cccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEe
Confidence 356899999999999999999999999999998877765 36899999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcc-
Q psy1758 992 TPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA- 1070 (1527)
Q Consensus 992 TPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~- 1070 (1527)
||||.||.+|++++|+++|+||+||||.+|+++||+.+|++|.++++|+|+||||||+++++++++++++++.|.....
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p 186 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAP 186 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEEEE
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCceEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988731000
Q ss_pred ------------------------------------------cc----------------------------------cc
Q psy1758 1071 ------------------------------------------TE----------------------------------EQ 1074 (1527)
Q Consensus 1071 ------------------------------------------~~----------------------------------~~ 1074 (1527)
.+ ..
T Consensus 187 ~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~g 266 (548)
T 3vqt_A 187 MTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKG 266 (548)
T ss_dssp SEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHTT
T ss_pred EEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHhC
Confidence 00 00
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC---------CCCCCceeEEEeeecc---ccCceEEEEE
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD---------NSNNPLQLQIISLEYS---SYLGKIGIGR 1142 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~---------~~~~p~~~~V~~~~~d---~~~G~v~~gr 1142 (1527)
.-+|++++||+++. |+++||+++++++|+|.. +.+.||.++||++.++ +|.|+++|+|
T Consensus 267 ~~~PV~~gSA~~~~----------Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~R 336 (548)
T 3vqt_A 267 ELTPVFFGSAINNF----------GVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLR 336 (548)
T ss_dssp SEEEEEECBGGGTB----------SHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEE
T ss_pred CcceeeecccccCc----------CHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEE
Confidence 12699999999998 999999999999999964 3467999999999887 8999999999
Q ss_pred eecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCCCCCCccCC
Q psy1758 1143 ILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 1222 (1527)
Q Consensus 1143 V~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~~~~~ 1222 (1527)
|+||+|++||.|++... ..++||++++.++|.+++++++|.|||||+|+|++++.+|||||+.+.+.+++++++++
T Consensus 337 V~sG~l~~g~~v~~~~~----~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~~~~~~~~~~~i~~~~ 412 (548)
T 3vqt_A 337 ICSGTFTRGMRLKHHRT----GKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKFVGIPNFA 412 (548)
T ss_dssp EEESCEETTCEEEETTT----TEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEESSSSCCCBCCCEEEC
T ss_pred EecceecCCCEEEeecc----ccccccchhhhhccccccccCEEecCCEEEecCCccCccCCEecCCCCccccCCCCCCC
Confidence 99999999999999765 35689999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhc-CcEEE-
Q psy1758 1223 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELS- 1300 (1527)
Q Consensus 1223 P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrre-g~ev~- 1300 (1527)
|++++++.|.++ .+..+|.++|.++.++|| +++.+++++++ ++|+|||||||+|++|||||| |+|+.
T Consensus 413 P~~~~av~p~~~---------~d~~kl~~~L~~L~eed~-~~v~~~~et~e-~il~g~GeLHLeI~~erL~~ey~vev~~ 481 (548)
T 3vqt_A 413 PEHFRRVRLKNP---------LKAKQLQKGLEQLAEEGA-VQLFRPLVNND-YILGAVGVLQFDVIVARLADEYGVDAVY 481 (548)
T ss_dssp CSEEEEEEESCG---------GGHHHHHHHHHHHHHTTS-SEEEEESSSCC-CEEEESSTHHHHHHHHHHHHHHCCCEEE
T ss_pred CcceeeeeeCCc---------hhHHHHHHHHHHhhhcCc-eeEEEECCCCc-EEEEEECHHHHHHHHHHHHHHhCCCEEE
Confidence 999999998764 145799999999998887 67888889999 999999999999999999876 99876
Q ss_pred ----EecCeeeEEEe
Q psy1758 1301 ----VSRPRVIFKTL 1311 (1527)
Q Consensus 1301 ----vs~P~V~yre~ 1311 (1527)
++.|+|+|||+
T Consensus 482 e~v~~~~P~V~YrEt 496 (548)
T 3vqt_A 482 EGVSTHTARWVYCED 496 (548)
T ss_dssp EECSCCEEEEEECSC
T ss_pred eeccccCceEEecCC
Confidence 57899999996
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-56 Score=555.14 Aligned_cols=367 Identities=21% Similarity=0.288 Sum_probs=299.6
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCccccccccc------ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN------ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDT 992 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~------~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDT 992 (1527)
..+++||+|+||+|||||||+++|++.++.+...+.+. .+++|+.+.|+++|+|+.+....+.|+++.++||||
T Consensus 10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDT 89 (529)
T 2h5e_A 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDT 89 (529)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEEC
Confidence 35679999999999999999999999877775544432 457899999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh----
Q psy1758 993 PGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL---- 1068 (1527)
Q Consensus 993 PGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l---- 1068 (1527)
|||.+|..++.++++.+|++|+|+|+++|+++||+.+|..+...++|+++|+||+|+..++..++++++.+.+...
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~~ 169 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPI 169 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEES
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCccce
Confidence 9999999999999999999999999999999999999999999999999999999999888877778777654210
Q ss_pred ----------------------------cc-----------c--------c---------------------------cc
Q psy1758 1069 ----------------------------CA-----------T--------E---------------------------EQ 1074 (1527)
Q Consensus 1069 ----------------------------~~-----------~--------~---------------------------~~ 1074 (1527)
+. . . ..
T Consensus 170 ~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~ 249 (529)
T 2h5e_A 170 TWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAG 249 (529)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHHTT
T ss_pred ecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHHhC
Confidence 00 0 0 00
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCC---------CCCCceeEEEeeec---cccCceEEEEE
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN---------SNNPLQLQIISLEY---SSYLGKIGIGR 1142 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~---------~~~p~~~~V~~~~~---d~~~G~v~~gr 1142 (1527)
.-+|++++||++|. |+++||++|.+++|+|... .++||.++|||+.+ +++.|++++||
T Consensus 250 ~~~Pv~~gSA~~~~----------Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~~R 319 (529)
T 2h5e_A 250 EITPVFFGTALGNF----------GVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMR 319 (529)
T ss_dssp SEEEEEECBTTTTB----------SHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEEEE
T ss_pred ceeEEEeeecccCC----------CHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEEEE
Confidence 12589999999998 9999999999999999642 15799999999987 46899999999
Q ss_pred eecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCCCCCCccCC
Q psy1758 1143 ILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 1222 (1527)
Q Consensus 1143 V~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~~~~~ 1222 (1527)
|+||+|++||.|++.+. | ...||++++.++|.++.++++|.|||||++.|++++.+|||||+.+ +..+++++.++
T Consensus 320 V~sG~l~~g~~v~~~~~--~--~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~-~~~~~~~~~~~ 394 (529)
T 2h5e_A 320 VVSGKYEKGMKLRQVRT--A--KDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGE-MMKFTGIPNFA 394 (529)
T ss_dssp EEESCEETTCEEEETTT--T--EEEECSCEECCCC-----CCEECTTCEEEECCSSCCCTTCEEESSC-CCCBCCCEEEC
T ss_pred EecCeEcCCCEEEEeeC--C--CEEEeceeeEEeCCCceEcceECCCCEEEEeccCCCccCCEeecCC-ccccCCCCCCC
Confidence 99999999999999876 3 4689999999999999999999999999999999999999999977 56788889999
Q ss_pred CceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhc-CcEEEE
Q psy1758 1223 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSV 1301 (1527)
Q Consensus 1223 P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrre-g~ev~v 1301 (1527)
|++++++.+.+. . +.++|.++|.++.++|| +++.+++++++ ++|+|||||||+|+++||+|| |+++.+
T Consensus 395 P~~~~~v~~~~~---~------d~~kl~~~L~~L~~ed~-~~~~~~~~t~~-~il~~~Gelhlev~~~rl~~ey~v~v~~ 463 (529)
T 2h5e_A 395 PELFRRIRLKDP---L------KQKQLLKGLVQLSEEGA-VQVFRPISNND-LIVGAVGVLQFDVVVARLKSEYNVEAVY 463 (529)
T ss_dssp CSEEEEEEESCC------------CTHHHHHHHHHHTTS-CEEEEETTSCC-EEEEESSTHHHHHHHHHHHHHSSCCEEE
T ss_pred ccEEEEEEECCh---H------HHHHHHHHHHHHHhhCC-EEEEEeCCCCc-EEEEEECHHHHHHHHHHHHHHhCcEEEE
Confidence 999999997553 1 24689999999999997 99999999999 999999999999999999875 999999
Q ss_pred ecCeeeEEEe
Q psy1758 1302 SRPRVIFKTL 1311 (1527)
Q Consensus 1302 s~P~V~yre~ 1311 (1527)
++|+|+|||+
T Consensus 464 ~~~~v~y~et 473 (529)
T 2h5e_A 464 ESVNVATARW 473 (529)
T ss_dssp ECCCCSEEEE
T ss_pred ecCceeEEEE
Confidence 9999999994
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-56 Score=553.51 Aligned_cols=406 Identities=22% Similarity=0.284 Sum_probs=342.8
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCccccccccc------ceecchhhhhcccceeEeeeeEEEEecCeEEEEEeC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN------ARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDT 992 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~------~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDT 992 (1527)
..++|||+|+||+|||||||+++|++.++.+.+.+.+. ..++|+.+.|+++|+|+.++...+.|+++.++||||
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDT 89 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDT 89 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECC
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEEC
Confidence 45789999999999999999999999988887665543 357899999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc-
Q psy1758 993 PGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT- 1071 (1527)
Q Consensus 993 PGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~- 1071 (1527)
|||.+|..++.++++.+|++|+|+|+++|+..|+..+|..+...++|+++|+||+|++.+++.+.++++.+.+......
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~~~~~ 169 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPV 169 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEES
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCCceee
Confidence 9999999999999999999999999999999999999999999999999999999999888888888887765320000
Q ss_pred ----------------------------------------------------------------------------cccc
Q psy1758 1072 ----------------------------------------------------------------------------EEQL 1075 (1527)
Q Consensus 1072 ----------------------------------------------------------------------------~~~~ 1075 (1527)
....
T Consensus 170 ~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~ 249 (528)
T 3tr5_A 170 TWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLKGE 249 (528)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHTTS
T ss_pred ecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhcCc
Confidence 0001
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCC---------CCCCceeEEEeeec--cc-cCceEEEEEe
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN---------SNNPLQLQIISLEY--SS-YLGKIGIGRI 1143 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~---------~~~p~~~~V~~~~~--d~-~~G~v~~grV 1143 (1527)
-+|++++||++|. |+++||+++.+++|+|... .++||.++|||+.+ |+ |+|+++++||
T Consensus 250 ~~PV~~gSA~~~~----------GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV 319 (528)
T 3tr5_A 250 LTPIFFGSAINNF----------GVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRI 319 (528)
T ss_dssp EEEEEECBGGGTB----------SHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEE
T ss_pred eeEEEeccccCCc----------cHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEE
Confidence 1499999999999 9999999999999999643 25899999999874 88 9999999999
Q ss_pred ecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceecccCCeeeCCCCCCCCCCCccCCC
Q psy1758 1144 LSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEP 1223 (1527)
Q Consensus 1144 ~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~iGdTi~~~~~~~~l~~~~~~~P 1223 (1527)
+||+|++||.|++.+. | ...||++++.++|.++.++++|.|||||+++|++++++|||||+. .+..+++++.++|
T Consensus 320 ~sG~l~~g~~v~~~~~--~--~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~~~GDtl~~~-~~~~~~~~~~~~P 394 (528)
T 3tr5_A 320 ASGQYQKGMKAYHVRL--K--KEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQG-ERFKFTGIPNFAS 394 (528)
T ss_dssp EESCEETTEEEEETTT--T--EEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSCCTTCEEESS-CCCCBCCCEEECC
T ss_pred ecCeEcCCCEEEecCC--C--ceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCCccCCEEcCC-CCcccCCCCCCCC
Confidence 9999999999999866 3 468999999999999999999999999999999999999999984 4556777888889
Q ss_pred ceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhc-CcEEEEe
Q psy1758 1224 TLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRRE-GYELSVS 1302 (1527)
Q Consensus 1224 ~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrre-g~ev~vs 1302 (1527)
.+.+++.+.+. .+..+|.++|.++.+|||+ ++.+++++++ ++|+|||+|||+|+++||+|| |+++.++
T Consensus 395 ~~~~~i~~~~~---------~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~-~il~~~G~lhlev~~~rL~~ey~v~v~~~ 463 (528)
T 3tr5_A 395 ELFRLVRLKDP---------LKQKALLKGLTQLSEEGAT-QLFRPLDSNE-LILGAVGLLQFDVVAYRLENEYNVKCVYE 463 (528)
T ss_dssp SEEEEEEESCG---------GGHHHHHHHHHHHHHTTSC-EEEEETTCCC-EEEEESSTHHHHHHHHHHHHHHCCCEEEE
T ss_pred CEEEEEEECCh---------hHHHHHHHHHHHHHhcCCe-EEEEcCCCCC-EEEEEEcHHHHHHHHHHHHHHhCcEEEEe
Confidence 99999987542 2468999999999999985 8888888999 999999999999999999865 9999999
Q ss_pred cCeeeEEEecceEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcC
Q psy1758 1303 RPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIG 1369 (1527)
Q Consensus 1303 ~P~V~yre~~g~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g 1369 (1527)
+|+|.|++ .|+.++. .-++.+....+..+-.+. +| +..|..|..=-+.
T Consensus 464 ~~~v~~~~------------~i~~~~~---~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~ 511 (528)
T 3tr5_A 464 SVNVVTAR------------WVICDDK---AVLERFNQEQSRNLAYDG--GG--HLTYLAPSRVNLE 511 (528)
T ss_dssp CCSCCEEE------------EEECSCH---HHHHHHHHHSGGGEEEET--TC--CEEEEESSHHHHH
T ss_pred cCceEEEE------------EecCCCH---hHHHHHhhhhcceEEEcC--CC--CEEEEEcCHHHHH
Confidence 99999998 3555443 345666555554444333 23 3335555544333
|
| >3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-55 Score=508.01 Aligned_cols=221 Identities=30% Similarity=0.490 Sum_probs=198.1
Q ss_pred ceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCC
Q psy1758 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 740 (1527)
Q Consensus 661 ~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~ 740 (1527)
..+|||+||||.||||||||+|+|++|+.+|+||+|||||+||||||||+|+|||+++|++..+|+|+++++||..|+
T Consensus 57 ~~~Gil~ldKP~G~TS~dvv~~vrr~l~~kKvGH~GTLDP~AtGvL~v~iG~aTKl~~~l~~~~K~Y~a~~~lG~~~~-- 134 (400)
T 3u28_A 57 ISSGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQGAGKEYVCIVRLHDALK-- 134 (400)
T ss_dssp HHTEEEEEEECSSSCHHHHHHHHHHHHTCSCEEESSCCCTTCEEEEEEEEGGGGGGHHHHHHSCEEEEEEEEESSCCS--
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHhCcCcccccCCCCCCCeEEEEEEEChHHhHhHHhcCCCcEEEEEEEeCCCCC--
Confidence 359999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC--C
Q psy1758 741 DIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI--P 818 (1527)
Q Consensus 741 d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~--~ 818 (1527)
+.++|+++|++|+|.|+|+||+|||+|+ ++|.++||++++++|+. |
T Consensus 135 ---------------~~~~i~~~l~~f~G~i~Q~PP~ySAvK~-----------------~~R~v~I~~i~ll~~~~~~~ 182 (400)
T 3u28_A 135 ---------------DEKDLGRSLENLTGALFQRPPLISAVKR-----------------QLRVRTIYESNLIEFDNKRN 182 (400)
T ss_dssp ---------------STTHHHHHHHHTCEEEEECCC-----CC-----------------CCEEEEEEEEEEEEEETTTT
T ss_pred ---------------CHHHHHHHHHhCcCceEEECCceecccC-----------------CceeEEEEEEEEEEEcCCCc
Confidence 4688999999999999999999999984 37999999999999987 7
Q ss_pred eEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccc-cChhHHHhhh----h--h-hhc-cccCccccc
Q psy1758 819 YLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKC-LNIDTIIKYS----E--Y-ERI-SSLIPIDIL 889 (1527)
Q Consensus 819 ~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a-~~l~~l~~~~----~--~-~~~-~~L~pie~~ 889 (1527)
.++|+|+||+||||||||||||.+|||+|||++||||++|+|+++++ ++++++.+.. . . ..+ ..|+|+|.+
T Consensus 183 ~~~~~V~CskGTYIRsL~~DiG~~LG~gahm~~LrRt~~G~F~~~~a~vtL~~l~~~~~~~~~~~~~~~l~~~l~P~e~~ 262 (400)
T 3u28_A 183 LGVFWASCEAGTYMRTLCVHLGMLLGVGGHMQELRRVRSGALSENDNMVTLHDVMDAQWVYDNTRDESYLRSIIQPLETL 262 (400)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHSSCEEEEEEEEEEETTEETTSSCBCHHHHHHHHHHHHHHCCCHHHHHHCEEGGGG
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEcCcchhhhcCCHHHHHHhhhhhhcccchhhHhhhcCCHHHH
Confidence 89999999999999999999999999999999999999999999986 8999996531 0 0 112 358999999
Q ss_pred ccccceeeecccccceeccCcccccc
Q psy1758 890 LSSFGIIYLSDLLSKRFLHGQNLFLS 915 (1527)
Q Consensus 890 L~~lP~i~l~d~~~~~i~nG~~i~ls 915 (1527)
+.++|.+.++++....+.||+.+...
T Consensus 263 l~~lp~V~L~deaa~~V~NGq~L~~p 288 (400)
T 3u28_A 263 LVGYKRIVVKDSAVNAVCYGAKLMIP 288 (400)
T ss_dssp GTTSCEEEECHHHHHHHHHHSEEEGG
T ss_pred HhhCCccccCHHHHHHHHCcCccccC
Confidence 99999999999999999999988753
|
| >2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-54 Score=503.93 Aligned_cols=220 Identities=32% Similarity=0.507 Sum_probs=195.6
Q ss_pred ceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCC
Q psy1758 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 740 (1527)
Q Consensus 661 ~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~ 740 (1527)
.++|||+||||+||||||||+|+|++|+.+|+||+|||||+||||||||+|+|||+++||+..+|+|+++++||.
T Consensus 64 ~~~Gil~vdKP~G~TS~~vv~~vr~~l~~~KvGH~GTLDP~AtGvL~v~~G~aTk~~~~l~~~~K~Y~~~~~lG~----- 138 (357)
T 2apo_A 64 IKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTIPMWHIPPKEYVCLMHLHR----- 138 (357)
T ss_dssp HHTEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGTTSSCEEEEEEEEESS-----
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHhCccccccccccCCCceeEEEEEeCHHHhHHHHhccCCcEEEEEEEECC-----
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeE
Q psy1758 741 DIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYL 820 (1527)
Q Consensus 741 d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~ 820 (1527)
+++.++|++++++|+|+|+|+||+|||+| +++|+++||++++++|+.|.+
T Consensus 139 -------------~~~~~~i~~~l~~f~G~i~Q~PP~~SAvK-----------------~~~R~v~I~~~~l~~~~~~~~ 188 (357)
T 2apo_A 139 -------------DASEEDILRVFKEFTGRIYQRPPLKAAVK-----------------RRLRIRKIHELELLDKDGKDV 188 (357)
T ss_dssp -------------CCCHHHHHHHHHHHSEEEECC----------------------------CEEEEEEEEEEEEETTEE
T ss_pred -------------CCCHHHHHHHHHhCcccEEEeCCchhhcc-----------------ccccceeEEEEEEEEeeCCEE
Confidence 36899999999999999999999999988 468999999999999999999
Q ss_pred EEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhh-------hhhc-cccCcccccccc
Q psy1758 821 TLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSE-------YERI-SSLIPIDILLSS 892 (1527)
Q Consensus 821 ~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~-------~~~~-~~L~pie~~L~~ 892 (1527)
+|+|+||+||||||||+|||.+|||+|||++||||++|+|++++|++++++.+... ...+ ..|+|++.++.+
T Consensus 189 ~~~v~cs~GTYIRsL~~DiG~~LG~~a~~~~LrRt~~G~f~~~~a~tl~~l~~~~~~~~~~g~~~~l~~~l~P~e~~l~~ 268 (357)
T 2apo_A 189 LFRVKCQSGTYIRKLCEDIGEALGTSAHMQELRRTKSGCFEEKDAVYLQDLLDAYVFWKEDGDEEELRRVIKPMEYGLRH 268 (357)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTSCEEEEEEEEEEETTEEGGGCBCHHHHHHHHHHHHTSCCCHHHHHHEEEGGGGGTT
T ss_pred EEEEEECCCchHHHHHHHHHHhhCCCEEEEEEEEEEEccCcHHHccCHHHHHhhhhhhhccCchhhHhhheeChhHhhcc
Confidence 99999999999999999999999999999999999999999999999999976421 1112 358999999999
Q ss_pred cceeeecccccceeccCcccccc
Q psy1758 893 FGIIYLSDLLSKRFLHGQNLFLS 915 (1527)
Q Consensus 893 lP~i~l~d~~~~~i~nG~~i~ls 915 (1527)
+|.+.++++.+..+.||+.+...
T Consensus 269 lP~v~l~~~~~~~i~nG~~L~~p 291 (357)
T 2apo_A 269 LKKVVVKDSAVDAICHGADVYVR 291 (357)
T ss_dssp SEEEEECHHHHHHHHTTCCEEGG
T ss_pred CcEEEECHHHHHHHhCcCccCCC
Confidence 99999999999999999988653
|
| >2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-54 Score=499.84 Aligned_cols=220 Identities=35% Similarity=0.535 Sum_probs=194.3
Q ss_pred ceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCC
Q psy1758 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 740 (1527)
Q Consensus 661 ~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~ 740 (1527)
.+||||+||||.|||||||++++|++|+.+|+||+|||||+||||||+|+|+|||+++|++..+|+|+++++||.
T Consensus 44 ~~~Gil~vdKP~g~tS~~vv~~vr~~~~~~KvGH~GTLDP~atGvL~v~~g~aTk~~~~l~~~~K~Y~~~~~lg~----- 118 (334)
T 2aus_C 44 IQYGVINLDKPPGPTSHEVVAWIKRILNLEKAGHGGTLDPKVSGVLPVALERATRVVQALLPAGKEYVALMHLHG----- 118 (334)
T ss_dssp HHTEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGGTTCCEEEEEEEEESS-----
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHhCcceeccccccCCccceeEEEEeChhhhhHHHhcccCcEEEEEEEECC-----
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeE
Q psy1758 741 DIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYL 820 (1527)
Q Consensus 741 d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~ 820 (1527)
+++.++|++++++|+|+|+|+||+|||+| +++|+++||++++++|+.|.+
T Consensus 119 -------------~~~~~~i~~~l~~f~G~i~Q~pP~~SA~k-----------------~~~R~v~I~~~~~~~~~~~~~ 168 (334)
T 2aus_C 119 -------------DVPEDKIRAVMKEFEGEIIQRPPLRSAVK-----------------RRLRTRKVYYIEILEIDGRDV 168 (334)
T ss_dssp -------------CCCHHHHHHHHHHTSEEEECC-----------------------------EEEEEEEEEEEEETTEE
T ss_pred -------------CCCHHHHHHHHHhCcCeEEEeCCccccCc-----------------CCcCCEEEEEEEEEEeeCCeE
Confidence 46899999999999999999999999998 468999999999999999999
Q ss_pred EEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCcccccc-ccChhHHHhhhh-------hhhc-cccCccccccc
Q psy1758 821 TLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDK-CLNIDTIIKYSE-------YERI-SSLIPIDILLS 891 (1527)
Q Consensus 821 ~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~-a~~l~~l~~~~~-------~~~~-~~L~pie~~L~ 891 (1527)
+|+|+||+||||||||||||.+|||+|||++||||++|+|++++ |++++++.+... ...+ +.|+|++.++.
T Consensus 169 ~~~v~cs~GTYIRsL~~Dig~~Lg~~a~~~~LrRt~~g~f~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~p~~~~l~ 248 (334)
T 2aus_C 169 LFRVGVEAGTYIRSLIHHIGLALGVGAHMAELRRTRSGPFKEDETLVTLHDLVDYYHFWKEDGIEEYIRKAIQPMEKAVE 248 (334)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSSCEEEEEEEEEEETTEESSTTEECHHHHHHHHHHHHTTCCCHHHHHHSEEGGGGGT
T ss_pred EEEEEECCCcHHHHHHHHHHHHhCCCEEEeEEEEEEEccCchhhcccCHHHHHhhhhhhccccchhhhhhhccChhHhcc
Confidence 99999999999999999999999999999999999999999999 799999975421 1112 35899999999
Q ss_pred ccceeeecccccceeccCcccccc
Q psy1758 892 SFGIIYLSDLLSKRFLHGQNLFLS 915 (1527)
Q Consensus 892 ~lP~i~l~d~~~~~i~nG~~i~ls 915 (1527)
++|.+.++++....+.||+.+...
T Consensus 249 ~~p~V~L~de~a~~V~nGq~L~~~ 272 (334)
T 2aus_C 249 HLPKIWIKDSAVAAVAHGANLTVP 272 (334)
T ss_dssp TSCEEEECHHHHHHHHTTCCEEGG
T ss_pred cccEEEECHHHHHHHHCCCccccC
Confidence 999999999999999999988653
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=369.10 Aligned_cols=282 Identities=25% Similarity=0.330 Sum_probs=228.8
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccc---------------cccceecchhhhhcccceeEeeeeEEEEec
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERGITIFSKNCSIEYN 983 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~---------------~~~~~~~D~~~~E~erGiTi~~~~~~~~~~ 983 (1527)
....+||+++||+|||||||+++|++.++.+.+.. +..++++|..+.|+++|+|++.....+.++
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 34568999999999999999999999988776433 122478999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCC-------hhHHHHHHHHHHcCCc-cEEEEeccCCCCCC--
Q psy1758 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPM-------PQTRFVTRKALKLGFK-PIVVVNKIDRSNAR-- 1053 (1527)
Q Consensus 984 ~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~-------~qt~~~~~~~~~~glp-~IvviNKiD~~~a~-- 1053 (1527)
+++++|||||||.+|...+.++++.+|++||||||++|++ +||++++..+..+++| +|+|+||||+...+
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~ 173 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 173 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchH
Confidence 9999999999999999999999999999999999999987 7999999999999999 78899999996543
Q ss_pred ---hhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCCCCCCCCCceeEEEe
Q psy1758 1054 ---PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIIS 1128 (1527)
Q Consensus 1054 ---~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~ 1128 (1527)
++++.+++.+.+..++.... .++|++++||++|++..+..+ .+.....|++ +++.+|+|..+.+.||+++|.+
T Consensus 174 ~~~~~~i~~~~~~~l~~~g~~~~-~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~-~l~~i~~~~~~~~~p~r~~v~~ 251 (439)
T 3j2k_7 174 NERYEECKEKLVPFLKKVGFNPK-KDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIP-YLDNLPNFNRSVDGPIRLPIVD 251 (439)
T ss_pred HHHHHHHHHHHHHHHHHhccccc-CCeeEEEeeccCCcccccccccccccCchHHHH-HHHhCCCCccCCCCCeEEEEEE
Confidence 34455555555544443221 257899999999984332111 1111123555 4467888888889999999999
Q ss_pred eeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEE--Eecce--ecccCC
Q psy1758 1129 LEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL--ITGIE--EICIGS 1204 (1527)
Q Consensus 1129 ~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIva--i~gl~--~~~iGd 1204 (1527)
++. +.|+++.|||.+|+|++||.|.++|. + ...+|.+|+.+ +.++++|.|||+|+ +.|++ +++.||
T Consensus 252 ~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~--~--~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~gi~~~~i~rG~ 321 (439)
T 3j2k_7 252 KYK--DMGTVVLGKLESGSIFKGQQLVMMPN--K--HNVEVLGILSD----DTETDFVAPGENLKIRLKGIEEEEILPGF 321 (439)
T ss_pred EEc--CCCeEEEEEEEeeEEecCCEEEEccC--C--ceEEEEEEEEC----CeEcCEecCCCcceEEEeccchhhcCCcE
Confidence 865 47999999999999999999999987 3 45789998764 46899999999998 67776 677799
Q ss_pred eeeCCCCC
Q psy1758 1205 TICDPSKP 1212 (1527)
Q Consensus 1205 Ti~~~~~~ 1212 (1527)
++|+++++
T Consensus 322 vl~~~~~~ 329 (439)
T 3j2k_7 322 ILCDPSNL 329 (439)
T ss_pred EecCCCCC
Confidence 99998764
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-36 Score=363.29 Aligned_cols=281 Identities=25% Similarity=0.339 Sum_probs=226.9
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..||+++||+|||||||+++|++.........+...+.+|....|+++|+|++.....+.++++.++|||||||.+|..+
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 36899999999999999999987522111111112235788899999999999988888888899999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCCCCC--hhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
+.++++.+|++||||||++|+++||+++|..+...++|. ++|+||+|+.+.. .+.+.+++.+.+..++.. .-.+|
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~ 160 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK--GEETP 160 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC--TTTSC
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC--cccCc
Confidence 999999999999999999999999999999999999995 7899999997521 223445555555444321 12478
Q ss_pred EEEeccccCCcCCCcccccCC-ChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEe
Q psy1758 1079 VIYTSALHGYANENSKARQGN-MIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIM 1157 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~g-i~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~ 1157 (1527)
++++||++|++..+..+. .| +.+|+++|.+++|+|..+.++||+++|++++++++.|++++|||++|+|++||.|.++
T Consensus 161 ~i~~SA~~g~n~~~~~~~-~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~ 239 (397)
T 1d2e_A 161 IIVGSALCALEQRDPELG-LKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFL 239 (397)
T ss_dssp EEECCHHHHHTTCCTTTT-HHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEE
T ss_pred EEEeehhhcccccCCCcc-CCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEe
Confidence 999999998632221111 14 8899999999999998888999999999999999999999999999999999999998
Q ss_pred cCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe--cc--eecccCCeeeCCCC
Q psy1758 1158 NGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GI--EEICIGSTICDPSK 1211 (1527)
Q Consensus 1158 ~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~--gl--~~~~iGdTi~~~~~ 1211 (1527)
+. +.....+|.+|..+. .++++|.|||+|++. |+ +++..||+||+++.
T Consensus 240 ~~--~~~~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~~ 291 (397)
T 1d2e_A 240 GH--SKNIRTVVTGIEMFH----KSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGS 291 (397)
T ss_dssp ET--TEEEEEEEEEEEETT----EEESEEETTCEEEEEESSCCGGGCCTTCEEESTTS
T ss_pred CC--CCCeEEEEEEEEECC----cccCEecCCCceEEEecccchhccCceeEEeCCCC
Confidence 76 212457899987653 689999999999775 65 57899999998763
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=360.58 Aligned_cols=283 Identities=27% Similarity=0.377 Sum_probs=226.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccc-cccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRK-NQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~-~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
...+||+++||+|||||||+++|++....... ..+.....+|..+.|+++|+|++.....+.++++.++|||||||.+|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 34579999999999999999999874111000 01112235788999999999999988889988999999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCc-cEEEEeccCCCCCC--hhhhHHHHHHHHhhhccccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
...+.++++.+|++|+|||+++|.++||+++|..+...++| +++|+||+|+.+.. .+.+.+++.+.+..++.. ..
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~--~~ 166 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP--GD 166 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC--TT
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc--cc
Confidence 99999999999999999999999999999999999999999 67899999997521 223344555555444321 12
Q ss_pred CCcEEEeccccCCcCC---------CcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecC
Q psy1758 1076 DFPVIYTSALHGYANE---------NSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSG 1146 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~---------~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG 1146 (1527)
.+|++++||++|.+.. ...+ ..++.+|++++.+++|+|..+.++||+++|++++++++.|++++|||++|
T Consensus 167 ~~~~i~~SA~~g~~v~~~~~~~~~~~~~~-~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G 245 (405)
T 2c78_A 167 EVPVIRGSALLALEQMHRNPKTRRGENEW-VDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERG 245 (405)
T ss_dssp TSCEEECCHHHHHHHHHHCTTCCTTSCHH-HHHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETTTEEEEEEECCBS
T ss_pred CCCEEEccHHHhhhhhccccccccCCCcc-cccHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCCCceEEEEEEecc
Confidence 4689999999997310 0000 01278999999999999988889999999999999999999999999999
Q ss_pred ccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe--cc--eecccCCeeeCCC
Q psy1758 1147 RIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GI--EEICIGSTICDPS 1210 (1527)
Q Consensus 1147 ~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~--gl--~~~~iGdTi~~~~ 1210 (1527)
+|++||.|.+++.+++ ....+|.+|+.+ +.++++|.|||+|++. |+ +++..||+||+++
T Consensus 246 ~l~~gd~v~~~~~~~~-~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~ 308 (405)
T 2c78_A 246 KVKVGDEVEIVGLAPE-TRKTVVTGVEMH----RKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPG 308 (405)
T ss_dssp EEETTCEEEEESSSSS-CEEEEEEEEEET----TEEESEEETTCEEEEEESSCCTTTCCTTCEEESTT
T ss_pred cccCCCEEEEeCCCCC-eeeEEEEEEEEC----CcccCEEcCCCEEEEEECCCcHhhcCceEEEEcCC
Confidence 9999999999987211 245789998765 3689999999999775 65 6789999999875
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=361.15 Aligned_cols=282 Identities=26% Similarity=0.323 Sum_probs=217.8
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCccccccc---------------ccceecchhhhhcccceeEeeeeEEEEecC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQN---------------INARIMDSNEIEKERGITIFSKNCSIEYNG 984 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~---------------~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 984 (1527)
...+||+++||+|||||||+++|++.++.+.+... ..++++|..+.|+++|+|++.....+.+.+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 35689999999999999999999988666543210 012578999999999999999999999999
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC-------CChhHHHHHHHHHHcCCc-cEEEEeccCCCCCC---
Q psy1758 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-------PMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR--- 1053 (1527)
Q Consensus 985 ~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G-------~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~--- 1053 (1527)
++++|||||||.+|..++.++++.+|++||||||++| +++||++++..+...++| +|+|+||+|+.+++
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 9999999999999999999999999999999999999 889999999999999986 67889999998742
Q ss_pred --hhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccc--cCCChhHHHHHHhhcCCCCCCCCCCceeEEEee
Q psy1758 1054 --PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKAR--QGNMIPLFEAILKYVPVHKDNSNNPLQLQIISL 1129 (1527)
Q Consensus 1054 --~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~--~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~ 1129 (1527)
++.+.+++.+.+..++... ..+|++++||++|.+..+.... +..-..|++++ +.+|+|....+.||+++|..+
T Consensus 164 ~~~~~~~~~i~~~~~~~~~~~--~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l-~~~~~p~~~~~~~~~~~v~~v 240 (435)
T 1jny_A 164 KRYKEIVDQVSKFMRSYGFNT--NKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYL-DQLELPPKPVDKPLRIPIQDV 240 (435)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC--TTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHH-TTCCCCCCGGGSCCBEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCc--CCceEEEeecccCccccccccccccccchhHHHHH-hccCCCCCCCCCCeEEEEEEE
Confidence 2445566666655443221 2468999999999843322110 00003788886 556777766688999999999
Q ss_pred eccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe--c--ceecccCCe
Q psy1758 1130 EYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--G--IEEICIGST 1205 (1527)
Q Consensus 1130 ~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~--g--l~~~~iGdT 1205 (1527)
++.++.|++++|||++|+|++||.|.+.+. + ...+|.+|+.+ ..++++|.|||+|++. | .+++..||+
T Consensus 241 ~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~--~--~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~ 312 (435)
T 1jny_A 241 YSISGVGTVPVGRVESGVLKVGDKIVFMPA--G--KVGEVRSIETH----HTKMDKAEPGDNIGFNVRGVEKKDIKRGDV 312 (435)
T ss_dssp EEETTTEEEEEEECCBSCEETTCEEEEETT--T--EEEEEEEEEET----TEEESEECTTCEEEEEEESSCGGGCCTTCE
T ss_pred EEeCCCcEEEEEEEecCeEEcCCEEEECCc--e--eEEEEEEEEEC----CcEEeEEcCCCEEEEEEecCCHHHcCCccE
Confidence 999999999999999999999999999976 2 56789999764 4789999999999874 4 468899999
Q ss_pred eeCCCCC
Q psy1758 1206 ICDPSKP 1212 (1527)
Q Consensus 1206 i~~~~~~ 1212 (1527)
||+++++
T Consensus 313 l~~~~~~ 319 (435)
T 1jny_A 313 VGHPNNP 319 (435)
T ss_dssp EECTTSC
T ss_pred ecCCCCC
Confidence 9987544
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-34 Score=355.02 Aligned_cols=286 Identities=21% Similarity=0.251 Sum_probs=217.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCccccc---------------ccccceecchhhhhcccceeEeeeeEEEEecC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKN---------------QNINARIMDSNEIEKERGITIFSKNCSIEYNG 984 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~---------------~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 984 (1527)
....||+++||+|+|||||+++|++.++.+... .+..++++|....|+++|+|++.....+.+.+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 345799999999999999999999987766532 12235789999999999999999999999999
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC-------CChhHHHHHHHHHHcCCc-cEEEEeccCCCCCC---
Q psy1758 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-------PMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR--- 1053 (1527)
Q Consensus 985 ~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G-------~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~--- 1053 (1527)
++++|||||||.+|...+.++++.+|++||||||++| +.+||++++..+...++| +|+|+||+|+.+++
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~ 190 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 190 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence 9999999999999999999999999999999999998 678999999999999976 77889999998754
Q ss_pred hhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc--------ccCCChhHHHHHHhhcCC--CCCCCCCCce
Q psy1758 1054 PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--------RQGNMIPLFEAILKYVPV--HKDNSNNPLQ 1123 (1527)
Q Consensus 1054 ~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--------~~~gi~~Ll~~i~~~lp~--p~~~~~~p~~ 1123 (1527)
.+++.+++.+.+..++... ..+|++++||++|.+..+... ....+.++|+.+...+|+ |..+.+.||+
T Consensus 191 ~~~i~~~~~~~l~~~g~~~--~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r 268 (483)
T 3p26_A 191 FEEIKSKLLPYLVDIGFFE--DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFL 268 (483)
T ss_dssp HHHHHHHHHHHHHHHTCCG--GGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCE
T ss_pred HHHHHHHHHHHHHHcCCCc--ccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceE
Confidence 3444555555555444322 136899999999985443211 012345667777777776 6677889999
Q ss_pred eEEEeeeccc---cCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEee----cCceeEeeeeecCCEEEE--
Q psy1758 1124 LQIISLEYSS---YLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFK----GLDRVLVNEALSGDIVLI-- 1194 (1527)
Q Consensus 1124 ~~V~~~~~d~---~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~----g~~~~~v~~a~AGdIvai-- 1194 (1527)
++|..++..+ +.|+++.|||.+|+|++||.|.+++. + ...+|.+|+.+. |+++.++++|.|||+|++
T Consensus 269 ~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~--~--~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l 344 (483)
T 3p26_A 269 FSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPS--E--QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKL 344 (483)
T ss_dssp EEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETT--T--EEEEEEEEEETTTC-----CCEESCEETTCEEEEEE
T ss_pred EEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCC--C--CeEEEEEEEEcCccccccccccccEECCCCEEEEEE
Confidence 9999999877 48999999999999999999999987 3 457899998874 677889999999999987
Q ss_pred ec--ceecccCCeeeCCCC
Q psy1758 1195 TG--IEEICIGSTICDPSK 1211 (1527)
Q Consensus 1195 ~g--l~~~~iGdTi~~~~~ 1211 (1527)
.+ .+++..||+||++++
T Consensus 345 ~~~~~~di~rG~vl~~~~~ 363 (483)
T 3p26_A 345 RKAYPEDIQNGDLAASVDY 363 (483)
T ss_dssp ESCCGGGCCTTCEEECTTC
T ss_pred EecccccCCceEEEEcCCC
Confidence 33 468999999999876
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=359.71 Aligned_cols=282 Identities=24% Similarity=0.288 Sum_probs=195.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccc---------------cccceecchhhhhcccceeEeeeeEEEEecC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERGITIFSKNCSIEYNG 984 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~---------------~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 984 (1527)
...+||+++||+|||||||+++|++.++.+.+.. ....+++|..+.|+++|+|++.....+.+++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4568999999999999999999998877764321 1124678999999999999999999999999
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCC-------hhHHHHHHHHHHcCCc-cEEEEeccCCCCCC---
Q psy1758 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPM-------PQTRFVTRKALKLGFK-PIVVVNKIDRSNAR--- 1053 (1527)
Q Consensus 985 ~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~-------~qt~~~~~~~~~~glp-~IvviNKiD~~~a~--- 1053 (1527)
++++|||||||.+|..++.++++.+|++||||||++|++ +||++++..+...++| +|+|+||+|+.+++
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 999999999999999999999999999999999999974 7999999999999998 78889999997543
Q ss_pred --hhhhHHHHHHHHhhh-cccccccCCcEEEeccccCCcCCCccc----ccCCChhHHHHHHhhcCCCCCCCCCCceeEE
Q psy1758 1054 --PEWVVDATFDLFDKL-CATEEQLDFPVIYTSALHGYANENSKA----RQGNMIPLFEAILKYVPVHKDNSNNPLQLQI 1126 (1527)
Q Consensus 1054 --~~~v~~~~~~~~~~l-~~~~~~~~~pvi~~SA~~g~~~~~~~~----~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V 1126 (1527)
++.+.+++.+.+..+ +... ..++|++++||++|.+..+... .+.....|++.+ +.+|.|..+.++||+++|
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~-~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l-~~i~~~~~~~~~p~~~~v 278 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNS-KTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYL-DSMTHLERKVNAPFIMPI 278 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCH-HHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHH-HHCCCCHHHHTSCCEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCCCc-cCCceEEecccccccccccccccccCccccchhHHHHH-HhCCCCcCCCCCCcEEEE
Confidence 234455565555443 2210 1146899999999985433211 111123466554 678888777789999999
Q ss_pred EeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ec-ceecccC
Q psy1758 1127 ISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TG-IEEICIG 1203 (1527)
Q Consensus 1127 ~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~g-l~~~~iG 1203 (1527)
.+++.+ .|++++|||.+|+|++||.|.+++. + ...+|.+|+.+ .+.++++|.|||+|++ .| .+++..|
T Consensus 279 ~~~~~~--~G~v~~G~v~~G~l~~gd~v~~~p~--~--~~~~V~~i~~~---~~~~~~~a~aG~~v~i~l~g~~~~i~rG 349 (467)
T 1r5b_A 279 ASKYKD--LGTILEGKIEAGSIKKNSNVLVMPI--N--QTLEVTAIYDE---ADEEISSSICGDQVRLRVRGDDSDVQTG 349 (467)
T ss_dssp CEEEES--SSEEEEEECCBSEEETTEEEEEETT--T--EEEEEEEEECT---TCCEESEEETTCEEEEEEESCCTTCCTT
T ss_pred EEEEeC--CCeEEEEEEeeeEEeeCCEEEEccC--C--eeEEEEEEecc---CCcEeeEEcCCCEEEEEEeccHhhCCce
Confidence 998653 7999999999999999999999976 2 45688888654 3568999999999987 56 5678999
Q ss_pred CeeeCCCCC
Q psy1758 1204 STICDPSKP 1212 (1527)
Q Consensus 1204 dTi~~~~~~ 1212 (1527)
|+||+++++
T Consensus 350 ~vl~~~~~~ 358 (467)
T 1r5b_A 350 YVLTSTKNP 358 (467)
T ss_dssp CEEECSSSC
T ss_pred EEEeCCCCC
Confidence 999987643
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=369.80 Aligned_cols=282 Identities=22% Similarity=0.259 Sum_probs=189.6
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccc---------------cccceecchhhhhcccceeEeeeeEEEEec
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERGITIFSKNCSIEYN 983 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~---------------~~~~~~~D~~~~E~erGiTi~~~~~~~~~~ 983 (1527)
....+||+|+||+|||||||+++|++.++.+.... +...+++|..+.|+++|+|++.....+.++
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 45678999999999999999999998766654331 112578999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCC-------ChhHHHHHHHHHHcCCc-cEEEEeccCCCCCCh-
Q psy1758 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-------MPQTRFVTRKALKLGFK-PIVVVNKIDRSNARP- 1054 (1527)
Q Consensus 984 ~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~-------~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~~- 1054 (1527)
++.++|||||||.+|...+.++++.+|++||||||++|. ++||++++..+..+++| +|+|+||+|+.+++.
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~ 333 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSED 333 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHH
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHH
Confidence 999999999999999999999999999999999999865 89999999999999998 678999999987543
Q ss_pred --hhhHHHHHHHH-hhhcccccccCCcEEEeccccCCcCCCcc----cccCCChhHHHHHHhhcCCCCCCCCCCceeEEE
Q psy1758 1055 --EWVVDATFDLF-DKLCATEEQLDFPVIYTSALHGYANENSK----ARQGNMIPLFEAILKYVPVHKDNSNNPLQLQII 1127 (1527)
Q Consensus 1055 --~~v~~~~~~~~-~~l~~~~~~~~~pvi~~SA~~g~~~~~~~----~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~ 1127 (1527)
+.+.+++.+.+ ..++... -.+|++++||++|.+..+.. ..+.....|++.|...+| |..+.+.||+++|.
T Consensus 334 ~~~~i~~el~~~l~~~~g~~~--~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~~~~~~p~r~~v~ 410 (592)
T 3mca_A 334 RFQEIKNIVSDFLIKMVGFKT--SNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PEKPYRKPLRLSID 410 (592)
T ss_dssp HHHHHHHHHHHHHTTTSCCCG--GGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CSCTTTSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCc--cceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-ccccccccchheee
Confidence 33445555544 3333221 23589999999998433211 112222379999977776 66677899999999
Q ss_pred eeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEee-eeecCCEEEE--ecce--eccc
Q psy1758 1128 SLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVN-EALSGDIVLI--TGIE--EICI 1202 (1527)
Q Consensus 1128 ~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~-~a~AGdIvai--~gl~--~~~i 1202 (1527)
++++. +.|++++|||.+|+|++||.|.++|. + ...+|.+|+.+ +.+++ +|.|||+|++ .|++ ++..
T Consensus 411 ~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~--~--~~~~V~~i~~~----~~~~~~~a~aG~~v~~~l~~i~~~~i~r 481 (592)
T 3mca_A 411 DVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSS--Q--EDAYVKNVIRN----SDPSSTWAVAGDTVTLQLADIEVNQLRP 481 (592)
T ss_dssp EEEEE-TTEEEEEEEEEESEEETTCEEEETTT--T--EEEEEEEEECS----SSCSCCEEETTCEEEEEESSSCGGGCCT
T ss_pred EEEec-CCeEEEEEEEeeeeEccCCEEEEccC--C--ceEEEEEEEEc----CccCcceecCCCEEEEEEccccccccce
Confidence 99999 99999999999999999999999876 3 35789988764 35889 9999999975 5754 6889
Q ss_pred CCeeeCCCCC
Q psy1758 1203 GSTICDPSKP 1212 (1527)
Q Consensus 1203 GdTi~~~~~~ 1212 (1527)
||+||+++.|
T Consensus 482 G~vl~~~~~~ 491 (592)
T 3mca_A 482 GDILSNYENP 491 (592)
T ss_dssp TCEEECSSSC
T ss_pred EEEeccCCCC
Confidence 9999997653
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=372.72 Aligned_cols=282 Identities=27% Similarity=0.365 Sum_probs=212.9
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....||+++||+|||||||+++|++.........+...+.+|..+.|+++|+|++.....+.+++++++|||||||.+|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 34579999999999999999999875211100111112367889999999999999988898889999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCc-cEEEEeccCCCCCC--hhhhHHHHHHHHhhhcccccccC
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
.++.++++.+|++|||||+++|+++||++++..+...++| +|+|+||+|+.+.. .+.+.+++.+.+...+.. ...
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~--~~~ 451 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP--GDD 451 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC--TTT
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc--ccc
Confidence 9999999999999999999999999999999999999999 57889999997521 223445566555544321 124
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEE
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVI 1156 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~ 1156 (1527)
+|++++||++|+.. +.. ...|+.+|++.|.+++|.|..+.++||+++|.+++.+++.|++++|||++|+|++||.|.+
T Consensus 452 vp~IpvSAktG~ng-~~~-w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I 529 (1289)
T 3avx_A 452 TPIVRGSALKALEG-DAE-WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI 529 (1289)
T ss_dssp CCEEECCSTTTTTC-CHH-HHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEE
T ss_pred eeEEEEEeccCCCC-Ccc-ccccchhhHhHHhhhcCCCccccccceeeeccccccccCCcEEEEEEEeccEEecCCEEEE
Confidence 79999999999421 100 1136889999999999999888889999999999999999999999999999999999999
Q ss_pred ecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe--cc--eecccCCeeeCCCC
Q psy1758 1157 MNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GI--EEICIGSTICDPSK 1211 (1527)
Q Consensus 1157 ~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~--gl--~~~~iGdTi~~~~~ 1211 (1527)
++. +.....+|.+|..+ ..++++|.|||+|++. |+ +++..||+|++++.
T Consensus 530 ~ps--~~~~~~kVksI~~~----~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~~ 582 (1289)
T 3avx_A 530 VGI--KETQKSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGT 582 (1289)
T ss_dssp ESS--SSCEEEEEEEEECS----SCEESEEETTCEEEEEESSCCGGGCCTTCEEESTTS
T ss_pred ecC--CCceeEEEEEEeec----CceeeEEecCCcceeEeeecchhcCCcccEEecCCC
Confidence 877 21245789988665 3589999999999764 66 57889999998764
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=346.43 Aligned_cols=282 Identities=23% Similarity=0.281 Sum_probs=218.6
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCccccc------------ccc-----cceecchhhhhcccceeEeeeeEEEEe
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKN------------QNI-----NARIMDSNEIEKERGITIFSKNCSIEY 982 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~------------~~~-----~~~~~D~~~~E~erGiTi~~~~~~~~~ 982 (1527)
...++|+++||+|||||||+++|++..+.+... +.+ ..+.+|..+.|+++|+|++.....+.+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 456899999999999999999999886544321 111 124689999999999999999999999
Q ss_pred cCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCc-cEEEEeccCCCCCChh---hhH
Q psy1758 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRSNARPE---WVV 1058 (1527)
Q Consensus 983 ~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~~~---~v~ 1058 (1527)
++++++|||||||.+|..++.++++.+|++||||||++|+++||++++..+...++| +|+|+||+|+.+++.+ .+.
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~ 181 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIK 181 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999986 6888999999875432 344
Q ss_pred HHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCc
Q psy1758 1059 DATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLG 1136 (1527)
Q Consensus 1059 ~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G 1136 (1527)
+++.+.+..++.. ...+|++++||++|.+..+... .+.....|++ +++.+|.|..+.+.||+++|..++...+.|
T Consensus 182 ~~~~~~~~~~g~~--~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~-~l~~i~~~~~~~~~~~~~~v~~v~~~~~~~ 258 (434)
T 1zun_B 182 ADYLKFAEGIAFK--PTTMAFVPMSALKGDNVVNKSERSPWYAGQSLME-ILETVEIASDRNYTDLRFPVQYVNRPNLNF 258 (434)
T ss_dssp HHHHHHHHTTTCC--CSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTH-HHHHSCCTTCCCSSSCEEECCEEECSSSSC
T ss_pred HHHHHHHHHhCCC--ccCceEEEEeccCCCCcccccccCccccCchHHH-HHhcCCCcccCCCCCcEEEEEEEeccCCCc
Confidence 5555544444310 1236899999999984332211 1111122554 456788888888899999999998877788
Q ss_pred eEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecce--ecccCCeeeCCCCC
Q psy1758 1137 KIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIE--EICIGSTICDPSKP 1212 (1527)
Q Consensus 1137 ~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~--~~~iGdTi~~~~~~ 1212 (1527)
+...|||.+|+|++||.|.+++. + ...+|.+|+.+. .++++|.|||+|++.+.+ ++..||+|++++++
T Consensus 259 ~g~~G~v~~G~l~~gd~v~~~p~--~--~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~~~~~i~~G~~l~~~~~~ 328 (434)
T 1zun_B 259 RGFAGTLASGIVHKGDEIVVLPS--G--KSSRVKSIVTFE----GELEQAGPGQAVTLTMEDEIDISRGDLLVHADNV 328 (434)
T ss_dssp CEEEEECCBSCEETTCEEEETTT--C--CEEEEEEEEETT----EEESEECTTCEEEEEESSCCCCCTTCEEEETTSC
T ss_pred eEEEEEEecceEeCCCEEEEecC--C--eEEEEEEEEEcC----cceeEecCCCEEEEEeCCccccCCccEEECCCCC
Confidence 99999999999999999999876 3 457899998775 479999999999987654 57789999987653
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=346.83 Aligned_cols=280 Identities=26% Similarity=0.336 Sum_probs=227.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCccccc------------c---cccceecchhhhhcccceeEeeeeEEEEecCe
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKN------------Q---NINARIMDSNEIEKERGITIFSKNCSIEYNGT 985 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~------------~---~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~ 985 (1527)
...+|+++||+|||||||+++|++.++.+... + +..++++|..+.|+++|+|++.....+.++++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 45799999999999999999999886655421 1 11235789999999999999999999999999
Q ss_pred EEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCCh-------hHHHHHHHHHHcCCc-cEEEEeccCCCCCCh---
Q psy1758 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP-------QTRFVTRKALKLGFK-PIVVVNKIDRSNARP--- 1054 (1527)
Q Consensus 986 ~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~-------qt~~~~~~~~~~glp-~IvviNKiD~~~a~~--- 1054 (1527)
+++|||||||.+|..++.++++.+|++||||||++|+++ ||++++..+...++| +|+|+||+|+.+++.
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~ 165 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRF 165 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHH
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHH
Confidence 999999999999999999999999999999999998776 999999999999997 778899999975432
Q ss_pred hhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccc--cC---------C---ChhHHHHHHhhcCCCCCCCCC
Q psy1758 1055 EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKAR--QG---------N---MIPLFEAILKYVPVHKDNSNN 1120 (1527)
Q Consensus 1055 ~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~--~~---------g---i~~Ll~~i~~~lp~p~~~~~~ 1120 (1527)
+.+.+++.+.+..++... .++|++++||++|.+..+.... +. | ...|++++ +.+|+|....+.
T Consensus 166 ~~i~~~~~~~l~~~g~~~--~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l-~~~~~p~~~~~~ 242 (458)
T 1f60_A 166 QEIVKETSNFIKKVGYNP--KTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAI-DAIEQPSRPTDK 242 (458)
T ss_dssp HHHHHHHHHHHHHHTCCG--GGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHH-HTSCCCCCCTTS
T ss_pred HHHHHHHHHHHHHcCCCc--cCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHh-hccCCCcccCCC
Confidence 345556665555444221 1368999999999864332110 00 0 23688885 567888888899
Q ss_pred CceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecc-
Q psy1758 1121 PLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI- 1197 (1527)
Q Consensus 1121 p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl- 1197 (1527)
||+++|..++..++.|++++|||.+|++++||+|.++|. + ...+|.+|..+ ..++++|.|||+|++ .|+
T Consensus 243 p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~--~--~~~~V~~i~~~----~~~~~~a~aG~~v~i~l~gi~ 314 (458)
T 1f60_A 243 PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPA--G--VTTEVKSVEMH----HEQLEQGVPGDNVGFNVKNVS 314 (458)
T ss_dssp CCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETT--T--EEEEEEEEEET----TEECSCBCTTCEEEEEESSCC
T ss_pred CcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCC--C--ceEEEeEEEEC----CeEEEEEcCCCEEEEEEcCCc
Confidence 999999999999999999999999999999999999977 2 45789888754 368999999999976 466
Q ss_pred -eecccCCeeeCCCC
Q psy1758 1198 -EEICIGSTICDPSK 1211 (1527)
Q Consensus 1198 -~~~~iGdTi~~~~~ 1211 (1527)
++++.||+|+++++
T Consensus 315 ~~~i~rG~vl~~~~~ 329 (458)
T 1f60_A 315 VKEIRRGNVCGDAKN 329 (458)
T ss_dssp TTTSCTTCEEEETTS
T ss_pred ccccCceeEEecCCC
Confidence 57889999999764
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-33 Score=332.20 Aligned_cols=237 Identities=19% Similarity=0.138 Sum_probs=200.9
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
||+++||+|||||||+++|+ ++|+|++.....+.+++++++|||||||.+|..++.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~ 78 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLI 78 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHH
Confidence 99999999999999999996 589999999999999999999999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEe-ccCCCCCC-hhhhHHHHHHHHhhhcccccccCCcEE
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVN-KIDRSNAR-PEWVVDATFDLFDKLCATEEQLDFPVI 1080 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviN-KiD~~~a~-~~~v~~~~~~~~~~l~~~~~~~~~pvi 1080 (1527)
++++.+|++||||| .+|+++||++++..+...++|. |+|+| |+|+ +.+ .+++.+++++.+..... ..+|++
T Consensus 79 ~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~----~~~~ii 152 (370)
T 2elf_A 79 TALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVL----QDWECI 152 (370)
T ss_dssp HHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTT----TTCEEE
T ss_pred HHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCC----CceEEE
Confidence 99999999999999 9999999999999999999999 89999 9999 432 23344556555433221 246899
Q ss_pred E--ecccc---CCcCCCcccccCCChhHHHHHHhhcCCCCC---C-CCCCceeEEEeeeccccCceEEEEEeecCccccC
Q psy1758 1081 Y--TSALH---GYANENSKARQGNMIPLFEAILKYVPVHKD---N-SNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSL 1151 (1527)
Q Consensus 1081 ~--~SA~~---g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~---~-~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~G 1151 (1527)
+ +||++ |. |+++|++.|.+.+|+|.. . ...|++++|..++..++.|++++|||++|++++|
T Consensus 153 ~~~~SA~~~~~g~----------gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~g 222 (370)
T 2elf_A 153 SLNTNKSAKNPFE----------GVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDK 222 (370)
T ss_dssp ECCCCTTSSSTTT----------THHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETT
T ss_pred ecccccccCcCCC----------CHHHHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeC
Confidence 9 99999 87 999999999999886521 1 3456777799999999999999999999999999
Q ss_pred CEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe--c--ceecccCCeeeC
Q psy1758 1152 QDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--G--IEEICIGSTICD 1208 (1527)
Q Consensus 1152 d~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~--g--l~~~~iGdTi~~ 1208 (1527)
|+|.+.+. + ...+|.+|+.+ ..++++|.|||+|++. | .+++..||+||+
T Consensus 223 d~v~~~p~--~--~~~~V~~i~~~----~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 223 DKTKIFPL--D--RDIEIRSIQSH----DVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD 275 (370)
T ss_dssp CEEEEETT--T--EEEEEEEEEET----TEEESEEETTCEEEEEEESCCGGGCCTTCEEES
T ss_pred CEEEECCC--C--cEEEEeEEEEC----CCCccEEcCCCcceEEEeccCHHHcCCceEEEC
Confidence 99999977 2 46789998765 2789999999999876 5 458899999997
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=355.44 Aligned_cols=286 Identities=21% Similarity=0.253 Sum_probs=228.2
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCccccc---------------ccccceecchhhhhcccceeEeeeeEEEEecC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKN---------------QNINARIMDSNEIEKERGITIFSKNCSIEYNG 984 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~---------------~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 984 (1527)
....+|+++||+|||||||+++|++.++.+... .....+++|....|+++|+|++.....+.+.+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 345799999999999999999999887665432 12235788999999999999999999999999
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC-------CChhHHHHHHHHHHcCCc-cEEEEeccCCCCCC---
Q psy1758 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-------PMPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR--- 1053 (1527)
Q Consensus 985 ~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G-------~~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~--- 1053 (1527)
++++|||||||.+|...+.++++.+|++||||||++| +.+||++++..+...++| +|+|+||+|+.+++
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~ 324 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 324 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence 9999999999999999999999999999999999987 578999999999999987 67889999998743
Q ss_pred hhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc-----cc---CCChhHHHHHHhhcCC--CCCCCCCCce
Q psy1758 1054 PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA-----RQ---GNMIPLFEAILKYVPV--HKDNSNNPLQ 1123 (1527)
Q Consensus 1054 ~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~-----~~---~gi~~Ll~~i~~~lp~--p~~~~~~p~~ 1123 (1527)
.+++.+++...+..++... -.+|++++||++|.+..+... .+ ..+.++|+.+...+|. |....+.||+
T Consensus 325 ~~ei~~~l~~~l~~~g~~~--~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r 402 (611)
T 3izq_1 325 FEEIKSKLLPYLVDIGFFE--DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFL 402 (611)
T ss_dssp HHHHHHHHHHHHHHHTCCG--GGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCE
T ss_pred HHHHHHHHHHHHHhhcccc--cCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchh
Confidence 3444555555555444322 136899999999985443211 01 1122333333333444 4556789999
Q ss_pred eEEEeeeccc---cCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEee----cCceeEeeeeecCCEEEE--
Q psy1758 1124 LQIISLEYSS---YLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFK----GLDRVLVNEALSGDIVLI-- 1194 (1527)
Q Consensus 1124 ~~V~~~~~d~---~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~----g~~~~~v~~a~AGdIvai-- 1194 (1527)
++|..++..+ +.|+++.|||.+|+|++||.|.++|. + ...+|.+|+.+. |+.+.++++|.|||+|++
T Consensus 403 ~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~--~--~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l 478 (611)
T 3izq_1 403 FSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPS--E--QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKL 478 (611)
T ss_dssp EECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTT--T--EEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEE
T ss_pred hheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecC--C--ceEEEEEEEEcccccccccccccceecCCCcceEEe
Confidence 9999999987 48999999999999999999999877 3 357899998874 777889999999999987
Q ss_pred ecc--eecccCCeeeCCCC
Q psy1758 1195 TGI--EEICIGSTICDPSK 1211 (1527)
Q Consensus 1195 ~gl--~~~~iGdTi~~~~~ 1211 (1527)
.|+ .++..||+||++++
T Consensus 479 ~~~~~~di~rGdvl~~~~~ 497 (611)
T 3izq_1 479 RKAYPEDIQNGDLAASVDY 497 (611)
T ss_dssp SSCCTTSCCTTCEEBCSTT
T ss_pred eeccHhhCcceEEccCCCC
Confidence 444 68899999999876
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=333.46 Aligned_cols=261 Identities=27% Similarity=0.363 Sum_probs=207.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec----------------
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---------------- 983 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---------------- 983 (1527)
...+||+++||+|||||||+++|+.. .+|....|+++|+|++.....+.+.
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~ 74 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPY 74 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTC-------------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCC-------------ccccChhhhcCCcEEEEeeeeeecccccccccccccccccc
Confidence 45689999999999999999999743 1366778999999998876665541
Q ss_pred -------CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHHcCC-ccEEEEeccCCCCCCh
Q psy1758 984 -------GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKLGF-KPIVVVNKIDRSNARP 1054 (1527)
Q Consensus 984 -------~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~~gl-p~IvviNKiD~~~a~~ 1054 (1527)
.+.++|||||||.+|..++.++++.+|++||||||++|. ++||++++..+..+++ |+++|+||+|+.+.+.
T Consensus 75 ~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~ 154 (410)
T 1kk1_A 75 CGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEK 154 (410)
T ss_dssp TCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHH
T ss_pred cCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHH
Confidence 178999999999999999999999999999999999997 9999999999888887 4678899999976431
Q ss_pred -hhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeee---
Q psy1758 1055 -EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLE--- 1130 (1527)
Q Consensus 1055 -~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~--- 1130 (1527)
.+..+++.+.+... ....+|++++||++|. |++.|+++|.+.+|.|..+.+.|++++|..++
T Consensus 155 ~~~~~~~i~~~l~~~----~~~~~~~i~vSA~~g~----------gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~ 220 (410)
T 1kk1_A 155 ALENYRQIKEFIEGT----VAENAPIIPISALHGA----------NIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVN 220 (410)
T ss_dssp HHHHHHHHHHHHTTS----TTTTCCEEECBTTTTB----------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCS
T ss_pred HHHHHHHHHHHHHhc----CcCCCeEEEeeCCCCC----------CHHHHHHHHHHhCCCCccccCCCcEEEEEEEEecc
Confidence 23445555544321 1235789999999998 99999999999999998888899999998765
Q ss_pred -----ccccCceEEEEEeecCccccCCEEEEecCC----CCC----cCcceeeeEEEeecCceeEeeeeecCCEEEEec-
Q psy1758 1131 -----YSSYLGKIGIGRILSGRIKSLQDVVIMNGP----DDK----PNKAKINQIRVFKGLDRVLVNEALSGDIVLITG- 1196 (1527)
Q Consensus 1131 -----~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~----~g~----~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~g- 1196 (1527)
++++.|++++|||++|+|++||.|.+++.. +|. ....+|.+|+.. +.++++|.|||+|++..
T Consensus 221 ~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~----~~~v~~a~aG~~v~~~~~ 296 (410)
T 1kk1_A 221 KPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAG----GQFVEEAYPGGLVGVGTK 296 (410)
T ss_dssp CCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEET----TEEESEECSSSCEEEEES
T ss_pred CCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEEC----CeEecEEcCCCEEEEEEe
Confidence 567799999999999999999999998651 010 013567777643 47899999999998752
Q ss_pred ----c--eecccCCeeeCCCC
Q psy1758 1197 ----I--EEICIGSTICDPSK 1211 (1527)
Q Consensus 1197 ----l--~~~~iGdTi~~~~~ 1211 (1527)
+ .++..||+||+++.
T Consensus 297 ~~~~~~~~d~~~G~vl~~~~~ 317 (410)
T 1kk1_A 297 LDPYLTKGDLMAGNVVGKPGK 317 (410)
T ss_dssp SCGGGTGGGTTTTCEEECTTC
T ss_pred cCcccchhhccceeEEecCCC
Confidence 2 46778999998764
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=326.78 Aligned_cols=261 Identities=26% Similarity=0.331 Sum_probs=199.6
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe---------------c-
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY---------------N- 983 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~---------------~- 983 (1527)
...+||+++||+|||||||+++|+.. .+|....|+++|+|++.....+.+ .
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~-------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~ 72 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGV-------------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPN 72 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSC-------------CCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCC-------------ccccCcccccCCcEEEecccccccccccccccccccccccc
Confidence 34689999999999999999999743 135667889999999876554433 1
Q ss_pred -------CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHHcCC-ccEEEEeccCCCCCC-
Q psy1758 984 -------GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKLGF-KPIVVVNKIDRSNAR- 1053 (1527)
Q Consensus 984 -------~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~~gl-p~IvviNKiD~~~a~- 1053 (1527)
.+.++|||||||.+|..++.++++.+|++||||||++|. ++||++++..+..+++ |+++|+||+|+.+.+
T Consensus 73 ~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~ 152 (408)
T 1s0u_A 73 CLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQ 152 (408)
T ss_dssp SCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTT
T ss_pred cCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHH
Confidence 178999999999999999999999999999999999997 9999999998888887 567899999997654
Q ss_pred hhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeee---
Q psy1758 1054 PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLE--- 1130 (1527)
Q Consensus 1054 ~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~--- 1130 (1527)
.....+++.+.+.... ...+|++++||++|. |+++|+++|.+.+|.|..+.+.|++++|.+++
T Consensus 153 ~~~~~~~i~~~l~~~~----~~~~~~i~vSA~~g~----------gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~ 218 (408)
T 1s0u_A 153 AEENYEQIKEFVKGTI----AENAPIIPISAHHEA----------NIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDIN 218 (408)
T ss_dssp TTTHHHHHHHHHTTST----TTTCCEEEC----------------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCC
T ss_pred HHHHHHHHHHHHhhcC----CCCCeEEEeeCCCCC----------CHHHHHHHHHHhCCCCcccCCCCeEEEEEEEEeec
Confidence 2345566665543321 225789999999998 99999999999999998888999999998765
Q ss_pred -----ccccCceEEEEEeecCccccCCEEEEecCC----CCC----cCcceeeeEEEeecCceeEeeeeecCCEEEEec-
Q psy1758 1131 -----YSSYLGKIGIGRILSGRIKSLQDVVIMNGP----DDK----PNKAKINQIRVFKGLDRVLVNEALSGDIVLITG- 1196 (1527)
Q Consensus 1131 -----~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~----~g~----~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~g- 1196 (1527)
++++.|.++.|+|.+|+|++||.|.+.|.. +|. ....+|.+|+.+ +.++++|.|||+|++..
T Consensus 219 ~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~a~~G~~v~~~~~ 294 (408)
T 1s0u_A 219 KPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAG----NTILRKAHPGGLIGVGTT 294 (408)
T ss_dssp CSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEET----TEEESEECSSSCEEEECS
T ss_pred CCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEEC----CEEcCEEeCCCeEEEEec
Confidence 566789999999999999999999998641 111 124688888764 36899999999999843
Q ss_pred ----c--eecccCCeeeCCCC
Q psy1758 1197 ----I--EEICIGSTICDPSK 1211 (1527)
Q Consensus 1197 ----l--~~~~iGdTi~~~~~ 1211 (1527)
+ +++..||++|+++.
T Consensus 295 ~~~~~~~~~~~~G~vl~~~~~ 315 (408)
T 1s0u_A 295 LDPYLTKSDALTGSVVGLPGT 315 (408)
T ss_dssp SCGGGTGGGTTTTCEEESTTC
T ss_pred cCcccchhhccceeEEECCCC
Confidence 2 36778999998764
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-32 Score=340.70 Aligned_cols=259 Identities=25% Similarity=0.306 Sum_probs=204.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..||+++||+|||||||+++|+... ....+|....|+++|+|++.....+.++++.++|||||||.+|.
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~---------~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~ 87 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIA---------STSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLI 87 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC-----------------------------CCCEEEETTEEEEECCCSSHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCC---------cccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHH
Confidence 345799999999999999999998542 12457888999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHHHHHHHhhh-cccccccCC
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKL-CATEEQLDF 1077 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~~~~~~~~l-~~~~~~~~~ 1077 (1527)
.++.++++.+|++||||||++|+++||++++..+...++|.|+|+||+|+.+.+ .+.+.+++.+.+... .. ..+
T Consensus 88 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~----~~~ 163 (482)
T 1wb1_A 88 RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL----KNS 163 (482)
T ss_dssp HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG----GGC
T ss_pred HHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc----ccc
Confidence 999999999999999999999999999999999999999999999999997532 344555555554332 11 146
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC--CCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEE
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH--KDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVV 1155 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p--~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~ 1155 (1527)
|++++||++|. |+++|+++|.+.+|.| ..+.++||+++|.+++..++.|.++.|+|.+|+|++||.|.
T Consensus 164 ~ii~vSA~~g~----------gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~ 233 (482)
T 1wb1_A 164 SIIPISAKTGF----------GVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELK 233 (482)
T ss_dssp CEEECCTTTCT----------THHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEEC
T ss_pred eEEEEECcCCC----------CHHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEE
Confidence 89999999998 9999999999988766 66678899999999999999999999999999999999999
Q ss_pred EecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecce--ecccCCee-eCC
Q psy1758 1156 IMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGIE--EICIGSTI-CDP 1209 (1527)
Q Consensus 1156 ~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~iGdTi-~~~ 1209 (1527)
++|. + ...+|.+|+.+ ..++++|.|||.|++ +|++ ++..||+| +++
T Consensus 234 ~~p~--~--~~~~V~~i~~~----~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~ 284 (482)
T 1wb1_A 234 VLPI--N--MSTKVRSIQYF----KESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKD 284 (482)
T ss_dssp CTTT--C--CCEEECCBCGG----GSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTT
T ss_pred ECCC--C--cEEEEeEEEEC----CeEeeEecCCCEEEEEecCCCHhhccccceEecCC
Confidence 9876 2 35688888755 357899999999876 4754 67889999 444
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-32 Score=342.42 Aligned_cols=348 Identities=20% Similarity=0.229 Sum_probs=245.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe------------------
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY------------------ 982 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~------------------ 982 (1527)
+.++|+|+||+|||||||+++|++....... .+|+|.......+.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e----------------~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~ 67 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASRE----------------AGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC--------------------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcccc----------------CCceecccCeEEEeechhhhhcccccccccccc
Confidence 3468999999999999999999865211100 023443333233322
Q ss_pred cCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCC-Ch-------
Q psy1758 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-RP------- 1054 (1527)
Q Consensus 983 ~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a-~~------- 1054 (1527)
....++|||||||.+|..++.++++.+|++|||+|+++|+++||..+|..+...++|+++|+||+|+... ..
T Consensus 68 ~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~ 147 (594)
T 1g7s_A 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFM 147 (594)
T ss_dssp TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchH
Confidence 2236999999999999999999999999999999999999999999999999999999999999999642 11
Q ss_pred -------hhhHH-------HHHHHHhhhcccc--------cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1055 -------EWVVD-------ATFDLFDKLCATE--------EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1055 -------~~v~~-------~~~~~~~~l~~~~--------~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+.+.+ ++.+.+.+.+... ....+|++++||++|. |+++|+++|...+|
T Consensus 148 e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~----------GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 148 ETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGE----------GIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCC----------CchhHHHHHHhhcc
Confidence 11111 2222222111111 1234699999999998 99999999998876
Q ss_pred CCC-----CCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEee--------cCc
Q psy1758 1113 VHK-----DNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFK--------GLD 1179 (1527)
Q Consensus 1113 ~p~-----~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~--------g~~ 1179 (1527)
.|. .++++|++++|+++.++++.|+++++||++|+|++||.|.+.+. .+ ....+|.+|+.+. +.+
T Consensus 218 ~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~-~~-~~~~rV~~i~~~~~~~elr~~~~~ 295 (594)
T 1g7s_A 218 QYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTS-KD-VISTRIRSLLKPRPLEEMRESRKK 295 (594)
T ss_dssp HHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBS-SS-EEEEECCEEEEECCCC----CCCS
T ss_pred ccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCC-CC-ceeEEEeEEEeccccchhhhccCC
Confidence 432 35689999999999999999999999999999999999999876 22 2345899998873 566
Q ss_pred eeEeeeee--cCCEEEEecceecccCCeeeCCCCCC--------CCCCCccCCCceeEEEEecCCCCCCCCCccccHHHH
Q psy1758 1180 RVLVNEAL--SGDIVLITGIEEICIGSTICDPSKPN--------GLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQI 1249 (1527)
Q Consensus 1180 ~~~v~~a~--AGdIvai~gl~~~~iGdTi~~~~~~~--------~l~~~~~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l 1249 (1527)
..++++|. ||++|++.|++++.+||||+..+++. .+..+.+..+.+.+.+.+... | +.+.|
T Consensus 296 ~~~v~ea~~~aG~~v~~~~l~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkad~~------g---s~eal 366 (594)
T 1g7s_A 296 FQKVDEVVAAAGIKIVAPGIDDVMAGSPLRVVTDPEKVREEILSEIEDIKIDTDEAGVVVKADTL------G---SLEAV 366 (594)
T ss_dssp EEECSEEESSEEEEEECSSCTTBCTTCEEEECSSHHHHHHHHHHHHHTTSCBCSSSCCEEEESSH------H---HHHHH
T ss_pred ceEccEEcCCCCcEEEEcccCCCCCCCEEEecCCHHHHHHHHHHHHHhcccccccccEEEEeCCC------C---CHHHH
Confidence 78899998 99999999999999999999876541 112223445666777765432 2 45788
Q ss_pred HHHHHHHHh------------cCCceE---EEecCCCCCeEEEEecchhHHHHHHHHH-HhcCcEEEEecCeeeEEEe
Q psy1758 1250 KNRLDHEIK------------NNIGLR---VTQNKHDDSIYEVSGRGELHLTILIENM-RREGYELSVSRPRVIFKTL 1311 (1527)
Q Consensus 1250 ~~~L~~~~~------------~d~sl~---v~~~~~~~~g~~v~g~GelhL~vl~e~l-rreg~ev~vs~P~V~yre~ 1311 (1527)
.+.|.++.. +|+.+- .+.+ .... .++++-=..+-+ .+++ +++|+++.. +.|+|+-+
T Consensus 367 ~~~l~~~~~~v~~~~vg~i~~~dv~~a~~~~~~~-~~~a-~i~~fnv~~~~~--~~~~a~~~~v~i~~--~~iiy~l~ 438 (594)
T 1g7s_A 367 VKILRDMYVPIKVADIGDVSRRDVVNAGIALQED-RVYG-AIIAFNVKVIPS--AAQELKNSDIKLFQ--GNVIYRLM 438 (594)
T ss_dssp HHHHHHTTCCCSEEEESSBCHHHHHHHHHHHTTC-TTSC-EEEEESCCBCHH--HHHHTSSSSSEEEE--ESCHHHHH
T ss_pred HHHHHhCCCcEEecccCCCCHHHHHHHHhhhccC-cCCC-EEEEeCCcCCHH--HHHHHHHcCCeEEE--CCHHHHHH
Confidence 888888611 111110 0001 1133 555554455555 2344 356887766 68888753
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=317.61 Aligned_cols=272 Identities=24% Similarity=0.253 Sum_probs=207.0
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe-----cCeEEEEEeCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-----NGTRINIIDTPG 994 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-----~~~~iniiDTPG 994 (1527)
....+|+++||+|||||||+++|+...... ..+............+..++++.......+.+ ..+.++||||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSK-KLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCS-SSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccc-ccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 445799999999999999999998642111 11111112222233344566655443222222 237899999999
Q ss_pred CCCchHHHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHHcCC-ccEEEEeccCCCCCC-hhhhHHHHHHHHhhhccc
Q psy1758 995 HADFGGEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKLGF-KPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 995 h~df~~ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~~gl-p~IvviNKiD~~~a~-~~~v~~~~~~~~~~l~~~ 1071 (1527)
|.+|..++.++++.+|++|||+||++|. ++||++++..+..++. |+++|+||+|+.+.+ ..+..+++.+.+....
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~-- 162 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW-- 162 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTST--
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhC--
Confidence 9999999999999999999999999997 9999999999998887 678899999997643 2334444444333221
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeee--------ccccCceEEEEEe
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLE--------YSSYLGKIGIGRI 1143 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~--------~d~~~G~v~~grV 1143 (1527)
...+|++++||++|. |+++|+++|.+.+|.|..+.+.||+++|.+++ ++++.|.+++|+|
T Consensus 163 --~~~~~ii~vSA~~g~----------gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v 230 (403)
T 3sjy_A 163 --AENVPIIPVSALHKI----------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSI 230 (403)
T ss_dssp --TTTCCEEECBTTTTB----------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEE
T ss_pred --CCCCEEEEEECCCCc----------ChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEE
Confidence 225789999999998 99999999999999998888999999998765 4667999999999
Q ss_pred ecCccccCCEEEEecCCCCC----------cCcceeeeEEEeecCceeEeeeeecCCEEEEe-----cc--eecccCCee
Q psy1758 1144 LSGRIKSLQDVVIMNGPDDK----------PNKAKINQIRVFKGLDRVLVNEALSGDIVLIT-----GI--EEICIGSTI 1206 (1527)
Q Consensus 1144 ~sG~lk~Gd~v~~~~~~~g~----------~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~-----gl--~~~~iGdTi 1206 (1527)
.+|++++||+|.+.|. +. ....+|.+|+.+ +.++++|.|||+|++. ++ +++..||++
T Consensus 231 ~~G~~~~gd~v~~~p~--~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G~vl 304 (403)
T 3sjy_A 231 IQGLFKVDQEIKVLPG--LRVEKQGKVSYEPIFTKISSIRFG----DEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSII 304 (403)
T ss_dssp EESCEETTCEEEEEEE--EEEEETTEEEEEEEEEEEEEEEET----TEEESEECSSSCEEEEESSCHHHHGGGTTTTCEE
T ss_pred EeCEEecCCEEEEeCC--cccccccccccccccEEEEEEEEC----CEEcCEEeCCCEEEEEeccccccchhhhccccEE
Confidence 9999999999999875 21 013588888764 4789999999999884 33 367889999
Q ss_pred eCCCCC
Q psy1758 1207 CDPSKP 1212 (1527)
Q Consensus 1207 ~~~~~~ 1212 (1527)
|+++.+
T Consensus 305 ~~~~~~ 310 (403)
T 3sjy_A 305 TLADAE 310 (403)
T ss_dssp EETTCC
T ss_pred eCCCCC
Confidence 987653
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=328.22 Aligned_cols=254 Identities=25% Similarity=0.247 Sum_probs=206.8
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
+.++|+++||+|||||||+++|+... + .....+|+|++.....+.++++.++|||||||.+|..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~--v--------------~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~ 66 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK--V--------------ASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTS 66 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH--H--------------SBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC--C--------------ccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHH
Confidence 45789999999999999999997531 0 0122478999888888889999999999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEE
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVI 1080 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi 1080 (1527)
.+.++++.+|++|||||+++|+++||.++|..+...++|+|+|+||+|+++++++++..++.+. .+........+|++
T Consensus 67 ~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~--~~~~~~~~~~~~~v 144 (501)
T 1zo1_I 67 MRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQY--GILPEEWGGESQFV 144 (501)
T ss_dssp SBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCC--CCCTTCCSSSCEEE
T ss_pred HHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHh--hhhHHHhCCCccEE
Confidence 9999999999999999999999999999999999999999999999999887655443332110 00011111247999
Q ss_pred EeccccCCcCCCcccccCCChhHHHHHHhh--cCCCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEec
Q psy1758 1081 YTSALHGYANENSKARQGNMIPLFEAILKY--VPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMN 1158 (1527)
Q Consensus 1081 ~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~--lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~ 1158 (1527)
++||++|. |+++|++++... ++.+..+++.|++++|++++.+++.|.+++++|.+|+|++||.|.+.+
T Consensus 145 ~vSAktG~----------gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~ 214 (501)
T 1zo1_I 145 HVSAKAGT----------GIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGF 214 (501)
T ss_dssp ECCTTTCT----------TCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEB
T ss_pred EEeeeecc----------CcchhhhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEcc
Confidence 99999998 999999999865 344455678899999999999999999999999999999999998753
Q ss_pred CCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceec-ccCCeeeCCCC
Q psy1758 1159 GPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEI-CIGSTICDPSK 1211 (1527)
Q Consensus 1159 ~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~-~iGdTi~~~~~ 1211 (1527)
. ..+|..|+...| .++++|.||+.|.+.|++++ ..||+++...+
T Consensus 215 ~------~~kVr~i~~~~g---~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~~~ 259 (501)
T 1zo1_I 215 E------YGRVRAMRNELG---QEVLEAGPSIPVEILGLSGVPAAGDEVTVVRD 259 (501)
T ss_dssp S------SCEEEEECCTTT---TSEEEECCSSCSSSEEECSCCCTTEEEEEECS
T ss_pred c------eeEEEEEEecCC---CcCcEeccCCcEEEeCCCCCCCCCCEEEecCC
Confidence 3 346776654433 57899999999999999874 78999986543
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-32 Score=334.98 Aligned_cols=254 Identities=27% Similarity=0.316 Sum_probs=211.5
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe-cCeEEEEEeCCCCCCchH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~iniiDTPGh~df~~ 1000 (1527)
.++|+++||+|||||||+++|++.. ...+..+|+|.+.....+.+ ++.+++|||||||.+|..
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~----------------~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~ 67 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQ----------------VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA 67 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHH----------------HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----------------cccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH
Confidence 4579999999999999999997541 11223568888877777777 577899999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEE
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVI 1080 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi 1080 (1527)
.+.++++.+|++|||+|+++|+++||.++|..+...++|+|+|+||+|+++++++.+..++...- +.......++|++
T Consensus 68 ~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~--~~~e~~~~~~~iv 145 (537)
T 3izy_P 68 MRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYD--VVCEDYGGDVQAV 145 (537)
T ss_dssp SBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTT--SCCCCSSSSEEEC
T ss_pred HHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhh--hhHHhcCCCceEE
Confidence 99999999999999999999999999999999999999999999999998877665555554321 1112222357899
Q ss_pred EeccccCCcCCCcccccCCChhHHHHHHhhcC--CCCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEec
Q psy1758 1081 YTSALHGYANENSKARQGNMIPLFEAILKYVP--VHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMN 1158 (1527)
Q Consensus 1081 ~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp--~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~ 1158 (1527)
++||++|. |+++|++++...++ .|..+++.|+++.|++++++++.|++++|+|.+|+|++||.+..
T Consensus 146 ~vSAktG~----------GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~~-- 213 (537)
T 3izy_P 146 HVSALTGE----------NMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVA-- 213 (537)
T ss_dssp CCCSSSSC----------SSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEECC--
T ss_pred EEECCCCC----------CchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEEe--
Confidence 99999998 99999999988754 44556789999999999999999999999999999999998742
Q ss_pred CCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecceec-ccCCeeeCCCCC
Q psy1758 1159 GPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEI-CIGSTICDPSKP 1212 (1527)
Q Consensus 1159 ~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~-~iGdTi~~~~~~ 1212 (1527)
| ....+|..|+.+.| .++++|.|||+|+|+|++++ ..||+|+..+++
T Consensus 214 ---g-~~~~kVr~i~~~~g---~~v~~A~~G~~V~i~g~~~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 214 ---G-KSWAKVRLMFDENG---RAVNEAYPSMPVGIIGWRDLPSAGDEILEVESE 261 (537)
T ss_dssp ---S-SCCEEEEEEEECCC---CCSCCSCCSTTCCCCSSEEEEEEESSCCSCCSS
T ss_pred ---C-CceEEEEEEEcCCC---CCCcEEcCCCEEEEECCCCCCCCCCEEEecCCh
Confidence 2 13468888887765 57999999999999999985 789999987654
|
| >1z9b_A Translation initiation factor IF-2; protein synthesis translation intiation IF2 FMet-tRNA structure; NMR {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-31 Score=264.42 Aligned_cols=135 Identities=40% Similarity=0.639 Sum_probs=121.5
Q ss_pred ChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEeecc
Q psy1758 324 NEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAV 403 (1527)
Q Consensus 324 ~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~~~v 403 (1527)
||.+|++++++|+. ++.++++.....+++++.++.+++.+.+|+|||||++||+|||.++|.++++++|+++|++++|
T Consensus 1 ~~~ea~~ia~~R~~--r~~~~~~~~~~~Le~l~~~i~~~~~k~l~vIiKaDv~GSlEAl~~~L~~l~~~ev~i~Ii~~gV 78 (135)
T 1z9b_A 1 NEFELGTRGSSRVD--LQEQRSVKTRVSLDDLFEQIKQGEMKELNLIVKADVQGSVEALVAALQKIDVEGVRVKIIHAAV 78 (135)
T ss_dssp CCSCCCCCTTTTSC--CCSCSSCSSCCSCCCCCCCCCCCSSCEEEEEEEESSHHHHHHHHHHHTTCCCSSCEEEEEEEEE
T ss_pred CchhHHHHHHHHHH--HHHHHHhhccCCHHHHHHHHhccCcccCCEEEEeCCcchHHHHHHHHHhcCCCceEEEEEeecC
Confidence 46678888888876 3333444445678889888888889999999999999999999999999999999999999999
Q ss_pred CcCChhhHHHHHhcCCEEEEeCCCCChhHHHHHHhCCCeEEEeehHHHHHHHHHHHH
Q psy1758 404 GNINESDINLAIASKAIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEI 460 (1527)
Q Consensus 404 G~it~~Dv~~A~~~~a~Ii~Fnv~~~~~~~~~a~~~~V~i~~~~iIY~l~~~~~~~~ 460 (1527)
|+||++||.+|++++|+||||||+++++++++|++.||+|++|||||+|+||+++.|
T Consensus 79 G~ItesDV~lA~as~aiIigFNV~~~~~a~~~A~~~gV~I~~~~IIY~liddv~~~m 135 (135)
T 1z9b_A 79 GAITESDISLATASNAIVIGFNVRPDANAKRAAESEKVDIRLHRIIYNVIEEIEAAM 135 (135)
T ss_dssp SCBCHHHHHHHHHHTCEEEESSCCBCTTHHHHHHTTTCCCEECTTCCCCSCCCSCC-
T ss_pred CCCCHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999987654
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=291.87 Aligned_cols=250 Identities=25% Similarity=0.332 Sum_probs=194.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc-------------------------------cccccCCceeEEEEEEEEEeCC
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN-------------------------------VVFSEAGGITQHIGAYNVVTNH 115 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~-------------------------------~~~~~~~giT~~~~~~~~~~~~ 115 (1527)
....+|+++||+|||||||+++|.... ......+|+|++.....+.+++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 345789999999999999999995432 1122346899999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCC-EEEEEEcccCCcchhH-
Q psy1758 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVM-------PQTREAIAHAKISGVP-LIVAINKIDKLDINLD- 186 (1527)
Q Consensus 116 ~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~-------~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~- 186 (1527)
..++|||||||++|...+..+++.+|++|||+|++++.. +|+.+++..+...++| +|+|+||+|+...+..
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~ 174 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 174 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHH
Confidence 999999999999999999999999999999999999876 7999999999999999 9999999999653221
Q ss_pred ----HHHHHHhhhcccccccC----CCCcEEEeeccCCCChhHHHHH--------HHHH-HHHHhhcCCCCCCCceEEEE
Q psy1758 187 ----RIKQDLISEQVIPEEYG----GASPFISISAKTGVGINKLLEN--------ISLQ-AEILELKAPVTTPAKGVIIE 249 (1527)
Q Consensus 187 ----~~~~~l~~~~~~~~~~~----~~~~v~~iSAktg~gI~eL~~~--------l~~~-~~~~~~~~~~~~p~~~~v~~ 249 (1527)
....++.. ....++ ..++++++||++|.|++++++. |... ........+.+.|++..|.+
T Consensus 175 ~~~~~i~~~~~~---~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~~ 251 (439)
T 3j2k_7 175 ERYEECKEKLVP---FLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVD 251 (439)
T ss_pred HHHHHHHHHHHH---HHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCCCccCCCCCeEEEEEE
Confidence 11122111 111111 2468999999999999997662 2221 12222233456788888888
Q ss_pred EeecCCCceEEEEEeeccEEEeccEEEecce--eeeEeEeeccCCceeeecCCCcceE--ecCCCCCC-CCCCeEEEe
Q psy1758 250 SRLDKGKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRSMLNENGKNILEAGPSIPVE--IQGLTKVP-FSGEELFVI 322 (1527)
Q Consensus 250 ~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~i~~~~g~~v~~a~~~~~v~--I~gl~~~~-~~G~~~~~~ 322 (1527)
.+. +.|++++++|.+|+|++||.|++++. ..+|++|+. ++.++.+|.||+.|. +.|++... .+|+++..-
T Consensus 252 ~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~-~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~ 326 (439)
T 3j2k_7 252 KYK--DMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILS-DDTETDFVAPGENLKIRLKGIEEEEILPGFILCDP 326 (439)
T ss_pred EEc--CCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEE-CCeEcCEecCCCcceEEEeccchhhcCCcEEecCC
Confidence 865 68999999999999999999998764 579999976 456899999998887 66777655 689877643
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-27 Score=288.59 Aligned_cols=149 Identities=19% Similarity=0.370 Sum_probs=108.8
Q ss_pred CCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChh--------hHHHHHHhhccc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE--------AFTAMRARGAKV 139 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e--------~f~~~~~~~~~~ 139 (1527)
.++|+++|++|||||||+|+|.+..+ .....+|+|++.....+.+.+..+.+|||||++ .|...+..+++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 37899999999999999999998775 467788999999998888889999999999985 677788889999
Q ss_pred cCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 140 TDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 140 aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
||++|+|+|+.++......+....++..+.|+++|+||+|+..... . ..... .++ ..+++++||++|.|+
T Consensus 83 ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~-----~--~~~~~--~lg-~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA-----N--IYDFY--SLG-FGEPYPISGTHGLGL 152 (436)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC----------C--CCSSG--GGS-SCCCEECBTTTTBTH
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh-----h--HHHHH--HcC-CCCeEEEeCcCCCCh
Confidence 9999999999999988888777778888999999999999865210 0 01111 122 226899999999999
Q ss_pred hHHHHHHH
Q psy1758 220 NKLLENIS 227 (1527)
Q Consensus 220 ~eL~~~l~ 227 (1527)
++|++.+.
T Consensus 153 ~~L~~~i~ 160 (436)
T 2hjg_A 153 GDLLDAVA 160 (436)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999885
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=297.13 Aligned_cols=335 Identities=23% Similarity=0.270 Sum_probs=243.9
Q ss_pred CCEEEEEecCCCChhHHHHHHHcccc---------------ccccCCceeEEEEEEEEEeC-----CeEEEEEeCCChhh
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNV---------------VFSEAGGITQHIGAYNVVTN-----HGSITFLDTPGHEA 128 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~---------------~~~~~~giT~~~~~~~~~~~-----~~~i~~iDTPG~e~ 128 (1527)
-++|+++||+|||||||+++|..... ......|+|+......+.|. ...++|||||||++
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 45899999999999999999976321 11123567776655555554 25899999999999
Q ss_pred HHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcE
Q psy1758 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPF 208 (1527)
Q Consensus 129 f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v 208 (1527)
|...+.++++.+|++|+|+|+++++..|+.++|..+...++|+|+|+||+|+..++..+...++...... ...++
T Consensus 86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~-----~~~~v 160 (600)
T 2ywe_A 86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGL-----DPEEA 160 (600)
T ss_dssp GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCC-----CGGGC
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCC-----CcccE
Confidence 9999999999999999999999999999999999999999999999999999887766555554433211 11368
Q ss_pred EEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecce--eeeEeE
Q psy1758 209 ISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRS 286 (1527)
Q Consensus 209 ~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~ 286 (1527)
+++||++|.|+++|+++|... ...+..+.+.|+.++|+++..+++.|.+++++|.+|+|++||.|.+.++ ..+|..
T Consensus 161 i~vSAktg~GI~~Lle~I~~~--lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~ 238 (600)
T 2ywe_A 161 ILASAKEGIGIEEILEAIVNR--IPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTE 238 (600)
T ss_dssp EECBTTTTBSHHHHHHHHHHH--SCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTEEEECCE
T ss_pred EEEEeecCCCchHHHHHHHHh--cccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCEEEeccccceEeeec
Confidence 999999999999999999744 2233334567899999999999999999999999999999999988543 346666
Q ss_pred eecc--CCceeeecCCCcceEe-cCCCCCC--CCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhcc
Q psy1758 287 MLNE--NGKNILEAGPSIPVEI-QGLTKVP--FSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINK 361 (1527)
Q Consensus 287 i~~~--~g~~v~~a~~~~~v~I-~gl~~~~--~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1527)
+... +..++.++.+|+.+.+ .|++++. ..||.+....+... ..+.. + +
T Consensus 239 i~~~~~~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~~~----------------------~~l~~----~-~ 291 (600)
T 2ywe_A 239 VGAQTPKMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPTK----------------------EPVPG----F-Q 291 (600)
T ss_dssp EEEESSSEEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSCCS----------------------SCCSC----C-C
T ss_pred ccccCCCceECCEEecCceeeeeccccchhhccCCCEEEeCCCccc----------------------cccCC----C-C
Confidence 6543 3456888999998877 4776543 78998875443200 00000 0 1
Q ss_pred ccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEeeccCcCChhhHHHHHhcCCEEEEeCCCCChhH------HHH
Q psy1758 362 EKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADAST------RKL 435 (1527)
Q Consensus 362 ~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~~~vG~it~~Dv~~A~~~~a~Ii~Fnv~~~~~~------~~~ 435 (1527)
.....+...+.....+..+.+.++|.++..+...+.+-. .++.+++.||.+...-.. ..+
T Consensus 292 ~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~~--------------et~~~l~~g~~~~~~G~lHlei~~erl 357 (600)
T 2ywe_A 292 PAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYEP--------------ESSPALGMGFRVGFLGLLHMEIVQERL 357 (600)
T ss_dssp CCCCCEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEEE--------------EEETTTEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCcEEEEEeeccccccHHHHHHHHHHHhhhCCEEEEEE--------------CCccccccceEEEeccHHHHHHHHHHH
Confidence 123456677888888999999999999987777776641 345567778777655432 344
Q ss_pred HHhCCCeEEEee--hHHH
Q psy1758 436 AQINNINIRYHN--IIYN 451 (1527)
Q Consensus 436 a~~~~V~i~~~~--iIY~ 451 (1527)
.++.|+++.... |+|+
T Consensus 358 ~re~~~~v~~~~P~V~yr 375 (600)
T 2ywe_A 358 EREYGVKIITTAPNVIYR 375 (600)
T ss_dssp HHHSCCCEEECCCEECEE
T ss_pred HhhcCceEEEEeeeEEEE
Confidence 455688887766 7776
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.5e-27 Score=283.26 Aligned_cols=248 Identities=27% Similarity=0.287 Sum_probs=193.4
Q ss_pred CCEEEEEecCCCChhHHHHHHHccc-------c---------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHH
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTN-------V---------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAM 132 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~-------~---------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~ 132 (1527)
..+|+++||+|||||||+++|++.. + ......|+|++.....+.+.+..++|||||||++|..+
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 3589999999999999999998641 1 01225689999888888888889999999999999999
Q ss_pred HHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcch--hHHHHHHHhhhccccccc-CCCCcE
Q psy1758 133 RARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDIN--LDRIKQDLISEQVIPEEY-GGASPF 208 (1527)
Q Consensus 133 ~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~--~~~~~~~l~~~~~~~~~~-~~~~~v 208 (1527)
+.++++.+|++|+|+|++++..+|+.+++..+...++| +++|+||+|+.+.. .+....++..... ...+ ...+|+
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~ 161 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLT-EFGYKGEETPI 161 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHH-HTTSCTTTSCE
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHH-HcCCCcccCcE
Confidence 99999999999999999999999999999999889999 78999999997521 1111111111100 0011 124799
Q ss_pred EEeeccCCCC----------hhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEec
Q psy1758 209 ISISAKTGVG----------INKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAG 278 (1527)
Q Consensus 209 ~~iSAktg~g----------I~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g 278 (1527)
+++||++|.| +++|++.|... +.....+.+.|+...|.+++.+++.|+|++++|.+|+|++||.|.+.
T Consensus 162 i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~--~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~ 239 (397)
T 1d2e_A 162 IVGSALCALEQRDPELGLKSVQKLLDAVDTY--IPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFL 239 (397)
T ss_dssp EECCHHHHHTTCCTTTTHHHHHHHHHHHHHH--SCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEE
T ss_pred EEeehhhcccccCCCccCCcHHHHHHHHHHh--CCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEe
Confidence 9999999875 88888888643 22233345678899999999999999999999999999999999753
Q ss_pred c----eeeeEeEeeccCCceeeecCCCcceEec--CCCCCC-CCCCeEE
Q psy1758 279 A----SYGRIRSMLNENGKNILEAGPSIPVEIQ--GLTKVP-FSGEELF 320 (1527)
Q Consensus 279 ~----~~~kVr~i~~~~g~~v~~a~~~~~v~I~--gl~~~~-~~G~~~~ 320 (1527)
+ ...+|++|... ++++.+|.||+.+.+. |++... .+|+++.
T Consensus 240 ~~~~~~~~~V~~i~~~-~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~ 287 (397)
T 1d2e_A 240 GHSKNIRTVVTGIEMF-HKSLDRAEAGDNLGALVRGLKREDLRRGLVMA 287 (397)
T ss_dssp ETTEEEEEEEEEEEET-TEEESEEETTCEEEEEESSCCGGGCCTTCEEE
T ss_pred CCCCCeEEEEEEEEEC-CcccCEecCCCceEEEecccchhccCceeEEe
Confidence 3 56799999654 5789999999987665 665332 7899776
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=296.77 Aligned_cols=252 Identities=27% Similarity=0.332 Sum_probs=194.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc-------cccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN-------VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKV 139 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~-------~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~ 139 (1527)
.+.++|+++||+|||||||+++|++.. ......+|+|++.....+.+++..++|||||||++|...+.++++.
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~ 96 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 96 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence 356799999999999999999999876 3456677999999888888899999999999999999999999999
Q ss_pred cCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 140 TDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 140 aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|++|+|+|++++..+|+.+++..+...++|+|+|+||+|+.+.+ .+....++.........+ ...+++++||++|.|
T Consensus 97 aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~-~~~~ii~vSA~~g~g 175 (482)
T 1wb1_A 97 IDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL-KNSSIIPISAKTGFG 175 (482)
T ss_dssp CCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG-GGCCEEECCTTTCTT
T ss_pred CCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc-ccceEEEEECcCCCC
Confidence 999999999999999999999999999999999999999998632 222222222111000011 136899999999999
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceee
Q psy1758 219 INKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNIL 296 (1527)
Q Consensus 219 I~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~ 296 (1527)
+++|++.|...........+.+.|+...+.+++..++.|+|++++|.+|+|++||.+.+.+ ...+|++|..+ ++.+.
T Consensus 176 I~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~-~~~v~ 254 (482)
T 1wb1_A 176 VDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYF-KESVM 254 (482)
T ss_dssp HHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCGG-GSCBC
T ss_pred HHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEEC-CeEee
Confidence 9999999987654332244556688888888999999999999999999999999998864 35799999764 56789
Q ss_pred ecCCCcceEe--cCCCCC-CCCCCeEE
Q psy1758 297 EAGPSIPVEI--QGLTKV-PFSGEELF 320 (1527)
Q Consensus 297 ~a~~~~~v~I--~gl~~~-~~~G~~~~ 320 (1527)
+|.||+.+.+ .|++.. ..+|+++.
T Consensus 255 ~a~~G~~v~~~l~~~~~~~i~~Gdvl~ 281 (482)
T 1wb1_A 255 EAKAGDRVGMAIQGVDAKQIYRGXILT 281 (482)
T ss_dssp CCCSSCCCCEECSSCCSSCCCSSCBCC
T ss_pred EecCCCEEEEEecCCCHhhccccceEe
Confidence 9999987765 476543 37899773
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=291.49 Aligned_cols=335 Identities=22% Similarity=0.251 Sum_probs=235.6
Q ss_pred CCEEEEEecCCCChhHHHHHHHcccc---------------ccccCCceeEEEEEEEEEeC-----CeEEEEEeCCChhh
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNV---------------VFSEAGGITQHIGAYNVVTN-----HGSITFLDTPGHEA 128 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~---------------~~~~~~giT~~~~~~~~~~~-----~~~i~~iDTPG~e~ 128 (1527)
-.+|+|+||+|||||||+++|..... ......|+|+......+.|. +..++|||||||++
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 35799999999999999999976321 11224578888777777665 25899999999999
Q ss_pred HHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcE
Q psy1758 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPF 208 (1527)
Q Consensus 129 f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v 208 (1527)
|..++.++++.+|++|+|+|+++++..|+.+.|..+...++|+++|+||+|+.+++..+...++...... ...++
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~-----~~~~v 158 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGI-----DATDA 158 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCC-----CCTTC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCC-----CcceE
Confidence 9999999999999999999999999999999999999999999999999999887766555555433211 11368
Q ss_pred EEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecce--eeeEeE
Q psy1758 209 ISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRS 286 (1527)
Q Consensus 209 ~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~ 286 (1527)
+++||++|.|+++|+++|... ...+..+.+.|+.++|+++..+++.|.++++++.+|+|++||.+.+.++ ..+|..
T Consensus 159 i~vSAktg~GI~~Ll~~I~~~--lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~ 236 (599)
T 3cb4_D 159 VRCSAKTGVGVQDVLERLVRD--IPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADR 236 (599)
T ss_dssp EEECTTTCTTHHHHHHHHHHH--SCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCCEEECCE
T ss_pred EEeecccCCCchhHHHHHhhc--CCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEEEeccccceeEEee
Confidence 999999999999999999754 2233344567899999999999999999999999999999999987543 446666
Q ss_pred eecc--CCceeeecCCCcceEe-cCCCCCC--CCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhhcc
Q psy1758 287 MLNE--NGKNILEAGPSIPVEI-QGLTKVP--FSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDINK 361 (1527)
Q Consensus 287 i~~~--~g~~v~~a~~~~~v~I-~gl~~~~--~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1527)
+... +...+.++.+|+.+.+ .|++++. ..||.+....+.. . ..+.. +.
T Consensus 237 i~~~~~~~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~--~--------------------~~l~~----~~- 289 (599)
T 3cb4_D 237 LGIFTPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPA--E--------------------KALPG----FK- 289 (599)
T ss_dssp EEEESSSEEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCC--S--------------------SCCTT----CC-
T ss_pred eeeccCCceECCEEcCCCeeEeeccccccccCccCCEeeecCCcc--c--------------------ccccc----cc-
Confidence 5443 3456788999998877 4766443 7899888544320 0 00000 00
Q ss_pred ccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEeeccCcCChhhHHHHHhcCCEEEEeCCCCChhH------HHH
Q psy1758 362 EKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADAST------RKL 435 (1527)
Q Consensus 362 ~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~~~vG~it~~Dv~~A~~~~a~Ii~Fnv~~~~~~------~~~ 435 (1527)
.....+...+.....+..+.+.++|.++..+...+.+- ..++.+++.+|.+...-.. ..+
T Consensus 290 ~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--------------~et~~~l~~gfr~g~lG~lhlei~~erl 355 (599)
T 3cb4_D 290 KVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYE--------------PESSSALGFGFRCGFLGLLHMEIIQERL 355 (599)
T ss_dssp CCCCCEEEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE--------------EEEETTTEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCcceEEEEEecCccCHHHHHHHHHHHHhhCcEEEEE--------------eccccccccceEEEeccHHHHHHHHHHH
Confidence 11234555566666778999999999997777666653 2345677888887765442 233
Q ss_pred HHhCCCeEEEee--hHHH
Q psy1758 436 AQINNINIRYHN--IIYN 451 (1527)
Q Consensus 436 a~~~~V~i~~~~--iIY~ 451 (1527)
.++.|+++.... |+|+
T Consensus 356 ~~e~~~~~~~~~P~V~yr 373 (599)
T 3cb4_D 356 EREYDLDLITTAPTVVYE 373 (599)
T ss_dssp HHTSCCCEEECCCEECEE
T ss_pred HHHcCceEEEEeeeEEEE
Confidence 334466666554 5553
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-27 Score=293.22 Aligned_cols=294 Identities=20% Similarity=0.229 Sum_probs=214.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc----------------------ccccCCceeEEEEEEEEEeCCeEEEEEeCC
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV----------------------VFSEAGGITQHIGAYNVVTNHGSITFLDTP 124 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~----------------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTP 124 (1527)
.|..+|+|+||+|||||||+++|..... ......|||+......+.|++++++|+|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 3567899999999999999999852211 223446899999999999999999999999
Q ss_pred ChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc---c--
Q psy1758 125 GHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI---P-- 199 (1527)
Q Consensus 125 G~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~---~-- 199 (1527)
||.+|...+.++++.+|++|+|+||.+|+++||...|+++...++|+++++||+|+..++..+...++...... +
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p~~ 188 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMT 188 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEEEESE
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCceEeEE
Confidence 99999999999999999999999999999999999999999999999999999999998877766655432100 0
Q ss_pred ------------------------------------------------------------------------c--ccCCC
Q psy1758 200 ------------------------------------------------------------------------E--EYGGA 205 (1527)
Q Consensus 200 ------------------------------------------------------------------------~--~~~~~ 205 (1527)
+ ..+..
T Consensus 189 ~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~g~~ 268 (548)
T 3vqt_A 189 WPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGEL 268 (548)
T ss_dssp EEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHTTSE
T ss_pred eeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHhCCc
Confidence 0 01234
Q ss_pred CcEEEeeccCCCChhHHHHHHHHHHHHHhh-------cCCCCCCCceEEEEEeec---CCCceEEEEEeeccEEEeccEE
Q psy1758 206 SPFISISAKTGVGINKLLENISLQAEILEL-------KAPVTTPAKGVIIESRLD---KGKGPVATVLIQSGTLRCSDIV 275 (1527)
Q Consensus 206 ~~v~~iSAktg~gI~eL~~~l~~~~~~~~~-------~~~~~~p~~~~v~~~~~~---~~~G~v~~~~v~~G~l~~gd~v 275 (1527)
+|+++.||++|.||+.|++.+......+.. ..+.+.|+.++|++...+ +..|.+++++|++|+|+.|+.|
T Consensus 269 ~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV~sG~l~~g~~v 348 (548)
T 3vqt_A 269 TPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRL 348 (548)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEEEEESCEETTCEE
T ss_pred ceeeecccccCcCHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEEEecceecCCCEE
Confidence 689999999999999999999754211000 012356888999998876 7899999999999999999999
Q ss_pred Eecce--eeeEeEeecc---CCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhh
Q psy1758 276 VAGAS--YGRIRSMLNE---NGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLH 350 (1527)
Q Consensus 276 v~g~~--~~kVr~i~~~---~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~ 350 (1527)
.+..+ ..||..++.. ...++.++.+|+.+.|.|++.. ..||.+..-.+..
T Consensus 349 ~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~-~~GDTl~~~~~~~------------------------ 403 (548)
T 3vqt_A 349 KHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTI-KIGDTFTESKEVL------------------------ 403 (548)
T ss_dssp EETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCC-CTTCEEESSSSCC------------------------
T ss_pred EeeccccccccchhhhhccccccccCEEecCCEEEecCCccC-ccCCEecCCCCcc------------------------
Confidence 87432 3455555444 4466889999999999999886 7899776221100
Q ss_pred hhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcC
Q psy1758 351 KTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLS 390 (1527)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~ 390 (1527)
.+.. + ....+.+.+-|.+...+..+.+.++|.++.
T Consensus 404 ~~~~----i-~~~~P~~~~av~p~~~~d~~kl~~~L~~L~ 438 (548)
T 3vqt_A 404 KFVG----I-PNFAPEHFRRVRLKNPLKAKQLQKGLEQLA 438 (548)
T ss_dssp CBCC----C-EEECCSEEEEEEESCGGGHHHHHHHHHHHH
T ss_pred ccCC----C-CCCCCcceeeeeeCCchhHHHHHHHHHHhh
Confidence 0000 0 001133455567777777888888887774
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=283.50 Aligned_cols=249 Identities=30% Similarity=0.350 Sum_probs=193.0
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc--------ccc---------cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT--------NVV---------FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~--------~~~---------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~ 130 (1527)
...+|+++||+|||||||+++|++. .+. .....|+|++.....+.+.+..++|||||||++|.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 89 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 89 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHH
Confidence 4478999999999999999999873 111 11245888888777888888899999999999999
Q ss_pred HHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcc-h-hHHHHHHHhhhccccccc-CCCC
Q psy1758 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDI-N-LDRIKQDLISEQVIPEEY-GGAS 206 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~-~-~~~~~~~l~~~~~~~~~~-~~~~ 206 (1527)
..+.++++.+|++|+|+|++++..+|+.+++..+...++| +++|+||+|+.+. . .+....++..... ...+ ....
T Consensus 90 ~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~-~~~~~~~~~ 168 (405)
T 2c78_A 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLN-QYEFPGDEV 168 (405)
T ss_dssp HHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHH-HTTSCTTTS
T ss_pred HHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHH-HhcccccCC
Confidence 9999999999999999999999999999999999999999 8999999999752 1 1111111111100 0011 1246
Q ss_pred cEEEeeccCCCC------------------hhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccE
Q psy1758 207 PFISISAKTGVG------------------INKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGT 268 (1527)
Q Consensus 207 ~v~~iSAktg~g------------------I~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~ 268 (1527)
|++++||++|.| +++|++.|... ......+.+.|++..|.+++.+++.|+|++++|.+|+
T Consensus 169 ~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~--lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~ 246 (405)
T 2c78_A 169 PVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEY--IPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGK 246 (405)
T ss_dssp CEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHH--SCCCCCCCSSCCEEECCEEEEETTTEEEEEEECCBSE
T ss_pred CEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhh--cCCCCCCCCCCcEEEEEEEEEcCCCceEEEEEEeccc
Confidence 999999999987 67777776432 1222334567889999999999999999999999999
Q ss_pred EEeccEEEecc-----eeeeEeEeeccCCceeeecCCCcceEec--CCCCCC-CCCCeEE
Q psy1758 269 LRCSDIVVAGA-----SYGRIRSMLNENGKNILEAGPSIPVEIQ--GLTKVP-FSGEELF 320 (1527)
Q Consensus 269 l~~gd~vv~g~-----~~~kVr~i~~~~g~~v~~a~~~~~v~I~--gl~~~~-~~G~~~~ 320 (1527)
|++||.|.+.+ ...+|++|.. .++++.+|.||+.+.+. |++... .+|+++.
T Consensus 247 l~~gd~v~~~~~~~~~~~~~V~~i~~-~~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~ 305 (405)
T 2c78_A 247 VKVGDEVEIVGLAPETRKTVVTGVEM-HRKTLQEGIAGDNVGVLLRGVSREEVERGQVLA 305 (405)
T ss_dssp EETTCEEEEESSSSSCEEEEEEEEEE-TTEEESEEETTCEEEEEESSCCTTTCCTTCEEE
T ss_pred ccCCCEEEEeCCCCCeeeEEEEEEEE-CCcccCEEcCCCEEEEEECCCcHhhcCceEEEE
Confidence 99999997644 3579999965 45789999999987665 664333 7899876
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-26 Score=275.28 Aligned_cols=237 Identities=22% Similarity=0.207 Sum_probs=189.4
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCC
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAAD 150 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~ 150 (1527)
+|+++||+|||||||+++|. ..|+|++.....+.+++.+++|||||||++|...+.++++.+|++|+|+| +
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~ 93 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P 93 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C
Confidence 89999999999999999998 45788888888888888999999999999999999999999999999999 9
Q ss_pred CCCcHHHHHHHHHHHHcCCCE-EEEEE-cccCCcchh-HHHHHHHhhhcccccccC-CCCcEEE--eeccC---CCChhH
Q psy1758 151 DGVMPQTREAIAHAKISGVPL-IVAIN-KIDKLDINL-DRIKQDLISEQVIPEEYG-GASPFIS--ISAKT---GVGINK 221 (1527)
Q Consensus 151 ~g~~~qt~e~i~~~~~~~vpi-IvviN-KiDl~~~~~-~~~~~~l~~~~~~~~~~~-~~~~v~~--iSAkt---g~gI~e 221 (1527)
++..+|+.+++..+...++|. |+++| |+|+ +.+. +....++.... ..++ ..+|+++ +||++ |.|+++
T Consensus 94 ~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l---~~~~~~~~~ii~~~~SA~~~~~g~gi~~ 169 (370)
T 2elf_A 94 QGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVIT---SGTVLQDWECISLNTNKSAKNPFEGVDE 169 (370)
T ss_dssp TCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHT---TTSTTTTCEEEECCCCTTSSSTTTTHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHH---HhcCCCceEEEecccccccCcCCCCHHH
Confidence 999999999999999999997 99999 9999 5332 22222222111 1111 3469999 99999 999999
Q ss_pred HHHHHHHHHHHH-hhcCC-CCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeee
Q psy1758 222 LLENISLQAEIL-ELKAP-VTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILE 297 (1527)
Q Consensus 222 L~~~l~~~~~~~-~~~~~-~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~ 297 (1527)
|++.|....... +...+ ...|++.++.+++..++.|++++++|.+|+|++||.|++.+ ...+|++|.. .++++.+
T Consensus 170 L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~-~~~~v~~ 248 (370)
T 2elf_A 170 LKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQS-HDVDIDS 248 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEE-TTEEESE
T ss_pred HHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEE-CCCCccE
Confidence 999998654322 11112 34456777999999999999999999999999999998865 5689999965 4688999
Q ss_pred cCCCcceEec--CCCCC-CCCCCeEEE
Q psy1758 298 AGPSIPVEIQ--GLTKV-PFSGEELFV 321 (1527)
Q Consensus 298 a~~~~~v~I~--gl~~~-~~~G~~~~~ 321 (1527)
|.||+.+.+. |++.. ..+|+++..
T Consensus 249 a~aGd~v~i~l~gv~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 249 APAGTRVGMRLKNVQAKDIERGFIISD 275 (370)
T ss_dssp EETTCEEEEEEESCCGGGCCTTCEEES
T ss_pred EcCCCcceEEEeccCHHHcCCceEEEC
Confidence 9999988776 65432 279998874
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.1e-26 Score=276.04 Aligned_cols=247 Identities=30% Similarity=0.338 Sum_probs=187.6
Q ss_pred CCEEEEEecCCCChhHHHHHHHccc---cccccCCceeEEEEEEEEEeC-----------------------CeEEEEEe
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTN---VVFSEAGGITQHIGAYNVVTN-----------------------HGSITFLD 122 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~---~~~~~~~giT~~~~~~~~~~~-----------------------~~~i~~iD 122 (1527)
..+|+++||+|||||||+++|++.. +.....+|+|++.......+. ...++|||
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 3689999999999999999998543 344556788887765544331 15799999
Q ss_pred CCChhhHHHHHHhhccccCEEEEEEeCCCCC-cHHHHHHHHHHHHcCC-CEEEEEEcccCCcchhH-HHHHHHhhhcccc
Q psy1758 123 TPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHAKISGV-PLIVAINKIDKLDINLD-RIKQDLISEQVIP 199 (1527)
Q Consensus 123 TPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-~~qt~e~i~~~~~~~v-piIvviNKiDl~~~~~~-~~~~~l~~~~~~~ 199 (1527)
||||++|..++.+++..+|++|+|+|++++. .+|+.+++..+...++ |+++|+||+|+.+.+.. ....++... ..
T Consensus 90 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~--l~ 167 (410)
T 1kk1_A 90 APGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEF--IE 167 (410)
T ss_dssp CSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHH--HT
T ss_pred CCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHH--HH
Confidence 9999999999999999999999999999997 8999999988887776 69999999999874321 112222111 11
Q ss_pred cccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeec--------CCCceEEEEEeeccEEEe
Q psy1758 200 EEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLD--------KGKGPVATVLIQSGTLRC 271 (1527)
Q Consensus 200 ~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~--------~~~G~v~~~~v~~G~l~~ 271 (1527)
..+...++++++||++|.|+++|+++|... ......+.+.|++..|.+++.. +.+|+|++++|.+|+|++
T Consensus 168 ~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~--~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~ 245 (410)
T 1kk1_A 168 GTVAENAPIIPISALHGANIDVLVKAIEDF--IPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKV 245 (410)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHH--SCCCCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEET
T ss_pred hcCcCCCeEEEeeCCCCCCHHHHHHHHHHh--CCCCccccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEee
Confidence 112235799999999999999999999643 2223334567888889888754 457899999999999999
Q ss_pred ccEEEecce--------------eeeEeEeeccCCceeeecCCCcceEecC-----CC-CCCCCCCeEE
Q psy1758 272 SDIVVAGAS--------------YGRIRSMLNENGKNILEAGPSIPVEIQG-----LT-KVPFSGEELF 320 (1527)
Q Consensus 272 gd~vv~g~~--------------~~kVr~i~~~~g~~v~~a~~~~~v~I~g-----l~-~~~~~G~~~~ 320 (1527)
||.|.+.+. ..+|++|+. +++++.+|.||+.+.+.. +. .-..+|+++.
T Consensus 246 gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~-~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~ 313 (410)
T 1kk1_A 246 GDEIEIRPGVPYEEHGRIKYEPITTEIVSLQA-GGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVG 313 (410)
T ss_dssp TCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE-TTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEE
T ss_pred CCEEEECCCCccccccccccccceeEEEEEEE-CCeEecEEcCCCEEEEEEecCcccchhhccceeEEe
Confidence 999987542 579999985 467899999999888752 21 1125787665
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.6e-26 Score=275.94 Aligned_cols=248 Identities=26% Similarity=0.316 Sum_probs=179.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccc---cccccCCceeEEEEEEEEEe---------------C--------CeEEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTN---VVFSEAGGITQHIGAYNVVT---------------N--------HGSITFL 121 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~---~~~~~~~giT~~~~~~~~~~---------------~--------~~~i~~i 121 (1527)
...+|+++||+|||||||+++|++.. +.....+|+|++.......+ + ...++||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 45789999999999999999998543 34445578888766544332 1 1579999
Q ss_pred eCCChhhHHHHHHhhccccCEEEEEEeCCCCC-cHHHHHHHHHHHHcCC-CEEEEEEcccCCcchhH-HHHHHHhhhccc
Q psy1758 122 DTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHAKISGV-PLIVAINKIDKLDINLD-RIKQDLISEQVI 198 (1527)
Q Consensus 122 DTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-~~qt~e~i~~~~~~~v-piIvviNKiDl~~~~~~-~~~~~l~~~~~~ 198 (1527)
|||||++|..++.++++.+|++|+|+|++++. .+|+.+++..+...+. |+++|+||+|+.+.+.. ....++... .
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~--l 164 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEF--V 164 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHH--H
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHH--H
Confidence 99999999999999999999999999999997 8999999988887776 69999999999764321 111222111 1
Q ss_pred ccccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecC--------CCceEEEEEeeccEEE
Q psy1758 199 PEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDK--------GKGPVATVLIQSGTLR 270 (1527)
Q Consensus 199 ~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~--------~~G~v~~~~v~~G~l~ 270 (1527)
...+...++++++||++|.|+++|+++|... +.....+.+.|++..|.+++..+ .+|+|++++|.+|+|+
T Consensus 165 ~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~--i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~ 242 (408)
T 1s0u_A 165 KGTIAENAPIIPISAHHEANIDVLLKAIQDF--IPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFK 242 (408)
T ss_dssp TTSTTTTCCEEEC------CHHHHHHHHHHH--SCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEE
T ss_pred hhcCCCCCeEEEeeCCCCCCHHHHHHHHHHh--CCCCcccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEe
Confidence 1112335799999999999999999999743 22333455678899999887543 4789999999999999
Q ss_pred eccEEEecce--------------eeeEeEeeccCCceeeecCCCcceEecC-----CCCC-CCCCCeEE
Q psy1758 271 CSDIVVAGAS--------------YGRIRSMLNENGKNILEAGPSIPVEIQG-----LTKV-PFSGEELF 320 (1527)
Q Consensus 271 ~gd~vv~g~~--------------~~kVr~i~~~~g~~v~~a~~~~~v~I~g-----l~~~-~~~G~~~~ 320 (1527)
+||.|.+.+. ..+|++|+.. ++++.+|.||+.+.+.. +..- -.+|+++.
T Consensus 243 ~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~ 311 (408)
T 1s0u_A 243 VGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAG-NTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVG 311 (408)
T ss_dssp TTCEEEEEEEEEECCTTCCEEEEEEEECCEEEET-TEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEE
T ss_pred cCCEEEEcCCcccccccccccccceeEEEEEEEC-CEEcCEEeCCCeEEEEeccCcccchhhccceeEEE
Confidence 9999988542 5799999775 57899999999998852 2211 15787664
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-26 Score=284.04 Aligned_cols=253 Identities=21% Similarity=0.248 Sum_probs=190.9
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccc-------------------------------cccccCCceeEEEEEEEEEeCCe
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTN-------------------------------VVFSEAGGITQHIGAYNVVTNHG 116 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~-------------------------------~~~~~~~giT~~~~~~~~~~~~~ 116 (1527)
...+|+++|++|+|||||+++|.+.. ......+|+|++.....+.+.+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 45789999999999999999997551 11223458999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC-------CcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHH-
Q psy1758 117 SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG-------VMPQTREAIAHAKISGVP-LIVAINKIDKLDINLDR- 187 (1527)
Q Consensus 117 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g-------~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~- 187 (1527)
.++|||||||++|..++..+++.+|++|+|+|++++ ...|+.+++..+...++| +|+|+||+|+.+.+...
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~ 191 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRF 191 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHH
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHH
Confidence 999999999999999999999999999999999997 668999999999888865 99999999998643222
Q ss_pred --HHHHHhhhcccccccC---CCCcEEEeeccCCCChhH---------------HHHHHHHHHHH-Hh--hcCCCCCCCc
Q psy1758 188 --IKQDLISEQVIPEEYG---GASPFISISAKTGVGINK---------------LLENISLQAEI-LE--LKAPVTTPAK 244 (1527)
Q Consensus 188 --~~~~l~~~~~~~~~~~---~~~~v~~iSAktg~gI~e---------------L~~~l~~~~~~-~~--~~~~~~~p~~ 244 (1527)
....+... ...++ ..++++++||++|.|+++ |++.|...... .. ...+.+.|++
T Consensus 192 ~~i~~~~~~~---l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r 268 (483)
T 3p26_A 192 EEIKSKLLPY---LVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFL 268 (483)
T ss_dssp HHHHHHHHHH---HHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCE
T ss_pred HHHHHHHHHH---HHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceE
Confidence 22222111 11111 136899999999999985 33444332211 11 3345678999
Q ss_pred eEEEEEeecC---CCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccC-------CceeeecCCCcceEec--CCC
Q psy1758 245 GVIIESRLDK---GKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNEN-------GKNILEAGPSIPVEIQ--GLT 310 (1527)
Q Consensus 245 ~~v~~~~~~~---~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~-------g~~v~~a~~~~~v~I~--gl~ 310 (1527)
..|.+.+..+ +.|+|++++|.+|+|++||.|++++ ...+|++|...+ ...+.+|.||+.|.+. +..
T Consensus 269 ~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~ 348 (483)
T 3p26_A 269 FSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAY 348 (483)
T ss_dssp EEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESCEETTCEEEEEEESCC
T ss_pred EEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccEECCCCEEEEEEEecc
Confidence 9999998876 5899999999999999999999866 457999998775 5789999999988773 332
Q ss_pred CCC-CCCCeEEEeC
Q psy1758 311 KVP-FSGEELFVIL 323 (1527)
Q Consensus 311 ~~~-~~G~~~~~~~ 323 (1527)
... .+|+++....
T Consensus 349 ~~di~rG~vl~~~~ 362 (483)
T 3p26_A 349 PEDIQNGDLAASVD 362 (483)
T ss_dssp GGGCCTTCEEECTT
T ss_pred cccCCceEEEEcCC
Confidence 222 7899877433
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-26 Score=278.24 Aligned_cols=252 Identities=23% Similarity=0.263 Sum_probs=191.4
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccc---------------------------------cccCCceeEEEEEEEEEeCC
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVV---------------------------------FSEAGGITQHIGAYNVVTNH 115 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~---------------------------------~~~~~giT~~~~~~~~~~~~ 115 (1527)
..+|+++||+|||||||+++|.+.... .....|+|++.....+.+++
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 368999999999999999999754310 01124788888888888889
Q ss_pred eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHHH---HHH
Q psy1758 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINLDRI---KQD 191 (1527)
Q Consensus 116 ~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~~---~~~ 191 (1527)
.+++|||||||++|..++.++++.+|++|+|+|++++..+|+.+++..+...++| +|+|+||+|+.+.+.+.. ..+
T Consensus 104 ~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~ 183 (434)
T 1zun_B 104 RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKAD 183 (434)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHH
T ss_pred ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988888886 899999999986433222 222
Q ss_pred HhhhcccccccC---CCCcEEEeeccCCCChhHHHHH--------HHHHHH-HHhhcCCCCCCCceEEEEEeecCCCceE
Q psy1758 192 LISEQVIPEEYG---GASPFISISAKTGVGINKLLEN--------ISLQAE-ILELKAPVTTPAKGVIIESRLDKGKGPV 259 (1527)
Q Consensus 192 l~~~~~~~~~~~---~~~~v~~iSAktg~gI~eL~~~--------l~~~~~-~~~~~~~~~~p~~~~v~~~~~~~~~G~v 259 (1527)
+.. ....++ ..++++++||++|.|++++++. |....+ +.....+.+.|++..|..++...+.|+.
T Consensus 184 ~~~---~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v~~v~~~~~~~~g 260 (434)
T 1zun_B 184 YLK---FAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILETVEIASDRNYTDLRFPVQYVNRPNLNFRG 260 (434)
T ss_dssp HHH---HHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHHSCCTTCCCSSSCEEECCEEECSSSSCCE
T ss_pred HHH---HHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHHhcCCCcccCCCCCcEEEEEEEeccCCCceE
Confidence 211 111222 2368999999999999985433 211111 1122223456788888777766667788
Q ss_pred EEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEecCCCCCC-CCCCeEEEeCC
Q psy1758 260 ATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEIQGLTKVP-FSGEELFVILN 324 (1527)
Q Consensus 260 ~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~-~~G~~~~~~~~ 324 (1527)
..++|.+|+|++||.|.+++ ...+|++|...+ .++.+|.||+.+.+.+....+ .+|+++....+
T Consensus 261 ~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~-~~~~~a~aG~~v~~~l~~~~~i~~G~~l~~~~~ 327 (434)
T 1zun_B 261 FAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFE-GELEQAGPGQAVTLTMEDEIDISRGDLLVHADN 327 (434)
T ss_dssp EEEECCBSCEETTCEEEETTTCCEEEEEEEEETT-EEESEECTTCEEEEEESSCCCCCTTCEEEETTS
T ss_pred EEEEEecceEeCCCEEEEecCCeEEEEEEEEEcC-cceeEecCCCEEEEEeCCccccCCccEEECCCC
Confidence 89999999999999999965 468999998765 579999999999998765444 69998875443
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=287.38 Aligned_cols=334 Identities=21% Similarity=0.248 Sum_probs=237.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc----------------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCC
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV----------------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPG 125 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~----------------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG 125 (1527)
+.++|+|+||+|||||||+++|..... .....+|+|.......+.+.+..++||||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 457899999999999999999962110 1112357888888888999999999999999
Q ss_pred hhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc---cc--
Q psy1758 126 HEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI---PE-- 200 (1527)
Q Consensus 126 ~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~---~~-- 200 (1527)
|++|...+.++++.+|++|+|+|+++++..++...|..+...++|+++|+||+|+...+..+...++...... +.
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~~~~~~~ 171 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPVTW 171 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESEE
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCCceeeec
Confidence 9999999999999999999999999999999999999999999999999999999876655444443221100 00
Q ss_pred --------------------------------------------------------------------------ccCCCC
Q psy1758 201 --------------------------------------------------------------------------EYGGAS 206 (1527)
Q Consensus 201 --------------------------------------------------------------------------~~~~~~ 206 (1527)
..+..+
T Consensus 172 pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~ 251 (528)
T 3tr5_A 172 PIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLKGELT 251 (528)
T ss_dssp EESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHTTSEE
T ss_pred ccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhcCcee
Confidence 001234
Q ss_pred cEEEeeccCCCChhHHHHHHHHHHHHHhhc-------CCCCCCCceEEEEEee--cC-CCceEEEEEeeccEEEeccEEE
Q psy1758 207 PFISISAKTGVGINKLLENISLQAEILELK-------APVTTPAKGVIIESRL--DK-GKGPVATVLIQSGTLRCSDIVV 276 (1527)
Q Consensus 207 ~v~~iSAktg~gI~eL~~~l~~~~~~~~~~-------~~~~~p~~~~v~~~~~--~~-~~G~v~~~~v~~G~l~~gd~vv 276 (1527)
|+|++||++|.||++|++.+......+... .+.+.|+.+.|++... ++ ++|++++++|.+|+|+.|+.|.
T Consensus 252 PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~sG~l~~g~~v~ 331 (528)
T 3tr5_A 252 PIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIASGQYQKGMKAY 331 (528)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEEEESCEETTEEEE
T ss_pred EEEeccccCCccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEEecCeEcCCCEEE
Confidence 899999999999999999997543111000 0124688999999874 77 8999999999999999999998
Q ss_pred ecce--eeeEeEeecc---CCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhh
Q psy1758 277 AGAS--YGRIRSMLNE---NGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHK 351 (1527)
Q Consensus 277 ~g~~--~~kVr~i~~~---~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~ 351 (1527)
..++ ..||.+++.. +...+.+|.||+.+.+.+++.. ..||.+.. .+. +.
T Consensus 332 ~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~-~~GDtl~~--~~~----~~------------------- 385 (528)
T 3tr5_A 332 HVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTI-QIGDTFTQ--GER----FK------------------- 385 (528)
T ss_dssp ETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSC-CTTCEEES--SCC----CC-------------------
T ss_pred ecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCC-ccCCEEcC--CCC----cc-------------------
Confidence 8653 4566666544 4467899999999999998776 78998873 110 00
Q ss_pred hhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEeeccCcCChhhHHHHHhcCCEEEEeCCCCChh
Q psy1758 352 TENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADAS 431 (1527)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~~~vG~it~~Dv~~A~~~~a~Ii~Fnv~~~~~ 431 (1527)
++. + ..-.+.+..-|.....+..+.+..+|.+|..+. .+.+.... .++.+|+++==...-+
T Consensus 386 ~~~----~-~~~~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED-~~~~~~~~-------------~~~~~il~~~G~lhle 446 (528)
T 3tr5_A 386 FTG----I-PNFASELFRLVRLKDPLKQKALLKGLTQLSEEG-ATQLFRPL-------------DSNELILGAVGLLQFD 446 (528)
T ss_dssp BCC----C-EEECCSEEEEEEESCGGGHHHHHHHHHHHHHTT-SCEEEEET-------------TCCCEEEEESSTHHHH
T ss_pred cCC----C-CCCCCCEEEEEEECChhHHHHHHHHHHHHHhcC-CeEEEEcC-------------CCCCEEEEEEcHHHHH
Confidence 000 0 001123445567777888888888888886544 23443221 2466777754333333
Q ss_pred H--HHHHHhCCCeEEEe
Q psy1758 432 T--RKLAQINNINIRYH 446 (1527)
Q Consensus 432 ~--~~~a~~~~V~i~~~ 446 (1527)
+ ..+.++.||++...
T Consensus 447 v~~~rL~~ey~v~v~~~ 463 (528)
T 3tr5_A 447 VVAYRLENEYNVKCVYE 463 (528)
T ss_dssp HHHHHHHHHHCCCEEEE
T ss_pred HHHHHHHHHhCcEEEEe
Confidence 3 23444556666554
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-26 Score=285.96 Aligned_cols=251 Identities=24% Similarity=0.316 Sum_probs=169.9
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccc--cc-----------------------------cccCCceeEEEEEEEEEeCCe
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTN--VV-----------------------------FSEAGGITQHIGAYNVVTNHG 116 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~--~~-----------------------------~~~~~giT~~~~~~~~~~~~~ 116 (1527)
+..+|+++||+|||||||+++|.... +. .....|+|++.....+.+++.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 34689999999999999999986422 10 112468899998888888999
Q ss_pred EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCC-EEEEEEcccCCcch--hH
Q psy1758 117 SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVM-------PQTREAIAHAKISGVP-LIVAINKIDKLDIN--LD 186 (1527)
Q Consensus 117 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~-------~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~--~~ 186 (1527)
.++|||||||++|..++.++++.+|++|||||++++.. +||.+++..+...++| +|+|+||+|+...+ .+
T Consensus 122 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~ 201 (467)
T 1r5b_A 122 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEE 201 (467)
T ss_dssp EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHH
T ss_pred EEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHH
Confidence 99999999999999999999999999999999999863 6999999999889998 99999999996532 22
Q ss_pred H---HHHHHhhhcccccccC--CCCcEEEeeccCCCChhHHHHH----------HHHHHHHH-hhcCCCCCCCceEEEEE
Q psy1758 187 R---IKQDLISEQVIPEEYG--GASPFISISAKTGVGINKLLEN----------ISLQAEIL-ELKAPVTTPAKGVIIES 250 (1527)
Q Consensus 187 ~---~~~~l~~~~~~~~~~~--~~~~v~~iSAktg~gI~eL~~~----------l~~~~~~~-~~~~~~~~p~~~~v~~~ 250 (1527)
. ...++.........+. ..++++++||++|.|++++++. |....+.. ....+.+.|++..|.++
T Consensus 202 ~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~v~~~ 281 (467)
T 1r5b_A 202 RYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIASK 281 (467)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEECCEE
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHhCCCCcCCCCCCcEEEEEEE
Confidence 1 1111211100000111 1368999999999999986631 22111111 11112357888888888
Q ss_pred eecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEe--cCCCCC-CCCCCeEEE
Q psy1758 251 RLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEI--QGLTKV-PFSGEELFV 321 (1527)
Q Consensus 251 ~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~-~~~G~~~~~ 321 (1527)
+. +.|++++++|.+|+|++||.|++++ ...+|++|+...++++.+|.||+.|.+ .| +.. ..+|+++..
T Consensus 282 ~~--~~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG~vl~~ 354 (467)
T 1r5b_A 282 YK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGYVLTS 354 (467)
T ss_dssp EE--SSSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTCCTTCEEEC
T ss_pred Ee--CCCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEeccCCcEeeEEcCCCEEEEEEec-cHhhCCceEEEeC
Confidence 76 4789999999999999999998854 568999998876789999999998888 56 332 279998774
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=277.21 Aligned_cols=251 Identities=27% Similarity=0.345 Sum_probs=182.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc--ccc-----------------------------cccCCceeEEEEEEEEEeCCe
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT--NVV-----------------------------FSEAGGITQHIGAYNVVTNHG 116 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~--~~~-----------------------------~~~~~giT~~~~~~~~~~~~~ 116 (1527)
+..+|+++||+|||||||+++|... .+. ....+|+|++.....+.+.+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 3468999999999999999999764 111 112468999998888899999
Q ss_pred EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC-------CcHHHHHHHHHHHHcCCC-EEEEEEcccCCcch--h-
Q psy1758 117 SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG-------VMPQTREAIAHAKISGVP-LIVAINKIDKLDIN--L- 185 (1527)
Q Consensus 117 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g-------~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~--~- 185 (1527)
.++|||||||++|..++.++++.+|++|+|+|++++ ..+|+.+++..+...++| +|+|+||+|+.+.+ .
T Consensus 85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~ 164 (435)
T 1jny_A 85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEK 164 (435)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHH
T ss_pred EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHH
Confidence 999999999999999999999999999999999998 788999999998888875 99999999998732 2
Q ss_pred --HHHHHHHhhhcccccccC-CCCcEEEeeccCCCChhHHHH--------HHHHHHH-HHhhcCCCCCCCceEEEEEeec
Q psy1758 186 --DRIKQDLISEQVIPEEYG-GASPFISISAKTGVGINKLLE--------NISLQAE-ILELKAPVTTPAKGVIIESRLD 253 (1527)
Q Consensus 186 --~~~~~~l~~~~~~~~~~~-~~~~v~~iSAktg~gI~eL~~--------~l~~~~~-~~~~~~~~~~p~~~~v~~~~~~ 253 (1527)
+....++..... ...+. ..++++++||++|.|+.++++ .|..... ...+..+.+.|++..|.+++..
T Consensus 165 ~~~~~~~~i~~~~~-~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~~~~p~~~~~~~~~~~v~~v~~~ 243 (435)
T 1jny_A 165 RYKEIVDQVSKFMR-SYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSI 243 (435)
T ss_dssp HHHHHHHHHHHHHH-HTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTTCCCCCCGGGSCCBEEEEEEEEE
T ss_pred HHHHHHHHHHHHHH-HcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhccCCCCCCCCCCeEEEEEEEEEe
Confidence 122222221110 00111 246899999999999985543 2221111 1111112246788889999999
Q ss_pred CCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEec--CCCCCC-CCCCeEE
Q psy1758 254 KGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEIQ--GLTKVP-FSGEELF 320 (1527)
Q Consensus 254 ~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I~--gl~~~~-~~G~~~~ 320 (1527)
++.|++++++|.+|+|++||.|++.+ ...+|++|... ++++.+|.||+.+.+. |++... .+|+++.
T Consensus 244 ~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~-~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~ 314 (435)
T 1jny_A 244 SGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETH-HTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVG 314 (435)
T ss_dssp TTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEET-TEEESEECTTCEEEEEEESSCGGGCCTTCEEE
T ss_pred CCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEEC-CcEEeEEcCCCEEEEEEecCCHHHcCCccEec
Confidence 99999999999999999999998854 57899999664 6789999999988874 554222 7999876
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-26 Score=280.73 Aligned_cols=250 Identities=23% Similarity=0.292 Sum_probs=191.6
Q ss_pred CCEEEEEecCCCChhHHHHHHHccc--cc-----------------------------cccCCceeEEEEEEEEEeCCeE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTN--VV-----------------------------FSEAGGITQHIGAYNVVTNHGS 117 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~--~~-----------------------------~~~~~giT~~~~~~~~~~~~~~ 117 (1527)
..+|+++||+|||||||+++|.+.. +. .....|+|++.....+.+.+..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 4689999999999999999997641 10 1113689999888888899999
Q ss_pred EEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcH-------HHHHHHHHHHHcCCC-EEEEEEcccCCcchhHH--
Q psy1758 118 ITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMP-------QTREAIAHAKISGVP-LIVAINKIDKLDINLDR-- 187 (1527)
Q Consensus 118 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~-------qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~-- 187 (1527)
++|||||||++|..++..+++.+|++|+|+|++++..+ |+.+++..+...++| +|+|+||+|+.+.+.+.
T Consensus 87 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~ 166 (458)
T 1f60_A 87 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQ 166 (458)
T ss_dssp EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHH
T ss_pred EEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHH
Confidence 99999999999999999999999999999999998766 999999888888997 99999999997432222
Q ss_pred -HHHHHhhhcccccccC---CCCcEEEeeccCCCChhHHHH--------------------HHHHHHH-HHhhcCCCCCC
Q psy1758 188 -IKQDLISEQVIPEEYG---GASPFISISAKTGVGINKLLE--------------------NISLQAE-ILELKAPVTTP 242 (1527)
Q Consensus 188 -~~~~l~~~~~~~~~~~---~~~~v~~iSAktg~gI~eL~~--------------------~l~~~~~-~~~~~~~~~~p 242 (1527)
...++... ...++ ..++++++||++|.|+.++.+ .|....+ +.....+.+.|
T Consensus 167 ~i~~~~~~~---l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~p~~~~~~p 243 (458)
T 1f60_A 167 EIVKETSNF---IKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPTDKP 243 (458)
T ss_dssp HHHHHHHHH---HHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHTSCCCCCCTTSC
T ss_pred HHHHHHHHH---HHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhccCCCcccCCCC
Confidence 22222111 11111 136899999999999975432 1221111 11222335678
Q ss_pred CceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEe--cCCCCCC-CCCC
Q psy1758 243 AKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEI--QGLTKVP-FSGE 317 (1527)
Q Consensus 243 ~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~~-~~G~ 317 (1527)
++..|.+++..++.|+|++++|.+|++++||.|.+.+ ...+|++|... +..+.+|.||+.+.+ .|++... .+|+
T Consensus 244 ~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~-~~~~~~a~aG~~v~i~l~gi~~~~i~rG~ 322 (458)
T 1f60_A 244 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMH-HEQLEQGVPGDNVGFNVKNVSVKEIRRGN 322 (458)
T ss_dssp CEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEET-TEECSCBCTTCEEEEEESSCCTTTSCTTC
T ss_pred cEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEEC-CeEEEEEcCCCEEEEEEcCCcccccCcee
Confidence 8999999999999999999999999999999998854 56899999754 568899999988776 4664333 7899
Q ss_pred eEEEe
Q psy1758 318 ELFVI 322 (1527)
Q Consensus 318 ~~~~~ 322 (1527)
++..-
T Consensus 323 vl~~~ 327 (458)
T 1f60_A 323 VCGDA 327 (458)
T ss_dssp EEEET
T ss_pred EEecC
Confidence 87754
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.93 E-value=9e-25 Score=282.47 Aligned_cols=303 Identities=22% Similarity=0.226 Sum_probs=232.8
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc------------------cccCCceeEEEEEEEEEeCC-------eEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV------------------FSEAGGITQHIGAYNVVTNH-------GSITFL 121 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~------------------~~~~~giT~~~~~~~~~~~~-------~~i~~i 121 (1527)
.+.++|+|+||+|||||||+++|...... .....++|+......+.+.+ ..++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 35678999999999999999999653210 01135788888888888877 899999
Q ss_pred eCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc---
Q psy1758 122 DTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI--- 198 (1527)
Q Consensus 122 DTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~--- 198 (1527)
|||||++|..++.++++.+|++|+|+|+++++..++...|..+...++|+++|+||+|+..++..+...++......
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~~~~ 167 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPV 167 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCCCce
Confidence 99999999999999999999999999999999999999999998899999999999999876655554443221000
Q ss_pred --------------------------cc-c--------------------------------------------------
Q psy1758 199 --------------------------PE-E-------------------------------------------------- 201 (1527)
Q Consensus 199 --------------------------~~-~-------------------------------------------------- 201 (1527)
.. .
T Consensus 168 ~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~~~ 247 (704)
T 2rdo_7 168 PLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAE 247 (704)
T ss_pred eEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHH
Confidence 00 0
Q ss_pred ----------cCCCCcEEEeeccCCCChhHHHHHHHHHHHHHh------------------hcCCCCCCCceEEEEEeec
Q psy1758 202 ----------YGGASPFISISAKTGVGINKLLENISLQAEILE------------------LKAPVTTPAKGVIIESRLD 253 (1527)
Q Consensus 202 ----------~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~------------------~~~~~~~p~~~~v~~~~~~ 253 (1527)
.+..+|+++.||++|.|++.|++.+......+. ...+.+.|+.++|++...+
T Consensus 248 l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d 327 (704)
T 2rdo_7 248 IKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATD 327 (704)
T ss_pred HHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCceEEEEEEEEEc
Confidence 012368999999999999999999985531110 0112467889999999999
Q ss_pred CCCceEEEEEeeccEEEeccEEEecce--eeeEeEee---ccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHH
Q psy1758 254 KGKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRSML---NENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKA 328 (1527)
Q Consensus 254 ~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~i~---~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a 328 (1527)
++.|++++++|++|+|+.||.|.+... ..+|.+++ ..+..++.++.+|+.+.|.|+++. ..||.+..-.+.
T Consensus 328 ~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~-~~GdTl~~~~~~--- 403 (704)
T 2rdo_7 328 PFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDV-TTGDTLCDPDAP--- 403 (704)
T ss_pred CCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEeCCCceEcceeCCCCEEEEeCcccC-ccCCEEeCCCcc---
Confidence 999999999999999999999988643 34555554 445577899999999999999887 889988732110
Q ss_pred HHHHHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEE
Q psy1758 329 REIGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVI 399 (1527)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv 399 (1527)
..++.+. -....+.+-|.+...+..+.+.++|.++..+...+.+.
T Consensus 404 ---------------------~~l~~~~-----~~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~ 448 (704)
T 2rdo_7 404 ---------------------IILERME-----FPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVW 448 (704)
T ss_pred ---------------------cccCCCC-----CCCceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEE
Confidence 0011110 11356888899999999999999999997776666664
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=292.14 Aligned_cols=250 Identities=27% Similarity=0.294 Sum_probs=187.6
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc----------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV----------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~----------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~ 130 (1527)
....+|+++||+|||||||+++|++... ......|+|++.....+...+..++|||||||++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 3457899999999999999999976410 112356888888777778888899999999999999
Q ss_pred HHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchh--HHHHHHHhhhccccccc-CCCC
Q psy1758 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINL--DRIKQDLISEQVIPEEY-GGAS 206 (1527)
Q Consensus 131 ~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~-~~~~ 206 (1527)
.++.++++.+|++|+|||++++..+|+.+++..+...++| +|+|+||+|+.+... +....++..... ...+ +..+
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk-~~G~~~~~v 452 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLS-QYDFPGDDT 452 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH-HTTSCTTTC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHH-hccccccce
Confidence 9999999999999999999999999999999999889999 899999999975211 111111111100 0011 1347
Q ss_pred cEEEeeccCC--------CChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEec
Q psy1758 207 PFISISAKTG--------VGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAG 278 (1527)
Q Consensus 207 ~v~~iSAktg--------~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g 278 (1527)
|++++||++| .|+++|++.|.... .....+.+.|+...|.+++.+++.|+|++++|.+|+|++||.|.+.
T Consensus 453 p~IpvSAktG~ng~~~w~eGI~eLleaL~~~I--p~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ 530 (1289)
T 3avx_A 453 PIVRGSALKALEGDAEWEAKILELAGFLDSYI--PEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIV 530 (1289)
T ss_dssp CEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS--CCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEE
T ss_pred eEEEEEeccCCCCCccccccchhhHhHHhhhc--CCCccccccceeeeccccccccCCcEEEEEEEeccEEecCCEEEEe
Confidence 9999999999 46888888875321 1122234568888999999999999999999999999999999875
Q ss_pred ce----eeeEeEeeccCCceeeecCCCcceEec--CCCCCC-CCCCeEE
Q psy1758 279 AS----YGRIRSMLNENGKNILEAGPSIPVEIQ--GLTKVP-FSGEELF 320 (1527)
Q Consensus 279 ~~----~~kVr~i~~~~g~~v~~a~~~~~v~I~--gl~~~~-~~G~~~~ 320 (1527)
+. ..+|++|.. .++++.+|.||+.|.+. |++... .+|+++.
T Consensus 531 ps~~~~~~kVksI~~-~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~ 578 (1289)
T 3avx_A 531 GIKETQKSTCTGVEM-FRKLLDEGRAGENVGVLLRGIKREEIERGQVLA 578 (1289)
T ss_dssp SSSSCEEEEEEEEEC-SSCEESEEETTCEEEEEESSCCGGGCCTTCEEE
T ss_pred cCCCceeEEEEEEee-cCceeeEEecCCcceeEeeecchhcCCcccEEe
Confidence 43 579999965 45689999999977664 664333 7899776
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-26 Score=292.68 Aligned_cols=249 Identities=20% Similarity=0.268 Sum_probs=168.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccc-------------------------------cccccCCceeEEEEEEEEEeCCe
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTN-------------------------------VVFSEAGGITQHIGAYNVVTNHG 116 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~-------------------------------~~~~~~~giT~~~~~~~~~~~~~ 116 (1527)
..++|+++||+|||||||+++|.... ......+|+|++.....+.+++.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 34589999999999999999996421 11122568999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCC-------cHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHHH
Q psy1758 117 SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-------MPQTREAIAHAKISGVP-LIVAINKIDKLDINLDRI 188 (1527)
Q Consensus 117 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-------~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~~ 188 (1527)
.++|||||||++|..++..+++.+|++|||||++++. .+|+.+++..+...++| +|+|+||+|+.+.+....
T Consensus 256 ~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~ 335 (592)
T 3mca_A 256 IYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRF 335 (592)
T ss_dssp ---CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHH
T ss_pred EEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHH
Confidence 9999999999999999999999999999999999864 89999999999999998 999999999976443322
Q ss_pred ---HHHHhhhccccccc-CCCCcEEEeeccCCCChh--------------HHHHHHHHHHHHHhhcCCCCCCCceEEEEE
Q psy1758 189 ---KQDLISEQVIPEEY-GGASPFISISAKTGVGIN--------------KLLENISLQAEILELKAPVTTPAKGVIIES 250 (1527)
Q Consensus 189 ---~~~l~~~~~~~~~~-~~~~~v~~iSAktg~gI~--------------eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~ 250 (1527)
..++.........+ ...++++++||++|.||. .|++.|... .+...+.+.|++..|.++
T Consensus 336 ~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~---~pp~~~~~~p~r~~v~~v 412 (592)
T 3mca_A 336 QEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL---VPPEKPYRKPLRLSIDDV 412 (592)
T ss_dssp HHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS---CCCSCTTTSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh---ccccccccccchheeeEE
Confidence 22222111000111 123589999999999998 677777432 223345567899999999
Q ss_pred eecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceee-ecCCCcceEe--cCCCCCC-CCCCeEEE
Q psy1758 251 RLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNIL-EAGPSIPVEI--QGLTKVP-FSGEELFV 321 (1527)
Q Consensus 251 ~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~-~a~~~~~v~I--~gl~~~~-~~G~~~~~ 321 (1527)
+.. +.|++++++|.+|+|++||.|++.+ ...+|++|..+ ++.+. +|.||+.|.+ .|+.... .+|+++..
T Consensus 413 ~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~-~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~ 487 (592)
T 3mca_A 413 YRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRN-SDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSN 487 (592)
T ss_dssp EEE-TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECS-SSCSCCEEETTCEEEEEESSSCGGGCCTTCEEEC
T ss_pred Eec-CCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEc-CccCcceecCCCEEEEEEccccccccceEEEecc
Confidence 999 9999999999999999999999854 46899999764 46788 9999998874 5765433 78998763
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=269.78 Aligned_cols=144 Identities=19% Similarity=0.357 Sum_probs=104.6
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCC--------hhhHHHHHHhhc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPG--------HEAFTAMRARGA 137 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG--------~e~f~~~~~~~~ 137 (1527)
.+.++|+|+|++|+|||||+|+|.+..+ .+...+|+|++.....+.+.+..+.+||||| ++.|......++
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 4568999999999999999999998876 4677889999999988888899999999999 889999999999
Q ss_pred cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 138 KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 138 ~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+.+|++|+|+|+.++......+.+..+...+.|+++|+||+|+.+.. ... .... ..+ ..+.+++||++|.
T Consensus 101 ~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~-----~~~--~e~~--~lg-~~~~~~iSA~~g~ 170 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR-----ANI--YDFY--SLG-FGEPYPISGTHGL 170 (456)
T ss_dssp HHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC----------------CCSG--GGS-SSSEEECCTTTCT
T ss_pred hhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh-----hhH--HHHH--HcC-CCceEEeeccccc
Confidence 99999999999999999999888888888999999999999986421 000 0111 111 1245678888877
Q ss_pred Chh
Q psy1758 218 GIN 220 (1527)
Q Consensus 218 gI~ 220 (1527)
|+.
T Consensus 171 gv~ 173 (456)
T 4dcu_A 171 GLG 173 (456)
T ss_dssp THH
T ss_pred chH
Confidence 773
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-25 Score=282.51 Aligned_cols=302 Identities=21% Similarity=0.219 Sum_probs=202.5
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccccc------------------ccCCceeEEEEEEEEEeCCeEEEEEeCCChhhH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVF------------------SEAGGITQHIGAYNVVTNHGSITFLDTPGHEAF 129 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~------------------~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f 129 (1527)
+.++|+|+||+|||||||+++|....... ....++|+......+.+.+..++|||||||++|
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 45789999999999999999997422110 114578888888888999999999999999999
Q ss_pred HHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc-----------
Q psy1758 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI----------- 198 (1527)
Q Consensus 130 ~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~----------- 198 (1527)
...+.++++.+|++|+|+|++++...++...|..+...++|+++|+||+|+...+..+...++......
T Consensus 91 ~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~~Pi~~ 170 (691)
T 1dar_A 91 TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGR 170 (691)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEEEESC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCccceeccccC
Confidence 999999999999999999999999999999999999999999999999999877655555444322100
Q ss_pred ------------------c-c-----------------------------------------------------------
Q psy1758 199 ------------------P-E----------------------------------------------------------- 200 (1527)
Q Consensus 199 ------------------~-~----------------------------------------------------------- 200 (1527)
. .
T Consensus 171 ~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~~~~~ 250 (691)
T 1dar_A 171 EDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGT 250 (691)
T ss_dssp GGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred CCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 0 0
Q ss_pred ccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhh----------------cCCCCCCCceEEEEEeecCCCceEEEEEe
Q psy1758 201 EYGGASPFISISAKTGVGINKLLENISLQAEILEL----------------KAPVTTPAKGVIIESRLDKGKGPVATVLI 264 (1527)
Q Consensus 201 ~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~----------------~~~~~~p~~~~v~~~~~~~~~G~v~~~~v 264 (1527)
..+..+|++++||++|.|+++|++.|......+.. ..+.+.|+.++|++...+++.|++++++|
T Consensus 251 ~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~~~~~RV 330 (691)
T 1dar_A 251 IDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRV 330 (691)
T ss_dssp HTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEEETTTEEEEEEEE
T ss_pred HhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEEcCCCCcEEEEEE
Confidence 00123689999999999999999999755311110 01246789999999999999999999999
Q ss_pred eccEEEeccEEEecce--eeeE---eEeeccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhch
Q psy1758 265 QSGTLRCSDIVVAGAS--YGRI---RSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKF 339 (1527)
Q Consensus 265 ~~G~l~~gd~vv~g~~--~~kV---r~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~ 339 (1527)
++|+|+.||.|.+..+ ..+| ..+......++.++.+|+.+.|.|+++. ..||.+..-.+..
T Consensus 331 ~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~Gdtl~~~~~~~------------- 396 (691)
T 1dar_A 331 YSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKET-ITGDTLVGEDAPR------------- 396 (691)
T ss_dssp EESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEECCSSC-CTTCEEEETTCCC-------------
T ss_pred eeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcceecCCCEEEEeCcccC-ccCCEEecCCCcc-------------
Confidence 9999999999987542 2344 4444455577899999999999999987 6799887422110
Q ss_pred HHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeE
Q psy1758 340 RDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQV 398 (1527)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~i 398 (1527)
..++.+.. ..+.+.+-|.+...+..+.+.++|.++..+...+.+
T Consensus 397 ----------~~l~~~~~-----~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v 440 (691)
T 1dar_A 397 ----------VILESIEV-----PEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRV 440 (691)
T ss_dssp ----------CBCC-------------------------------------CCCCSCEE
T ss_pred ----------cccCCCCC-----CCceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEE
Confidence 00111100 114566778888889999999999999777666665
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=286.42 Aligned_cols=253 Identities=21% Similarity=0.261 Sum_probs=193.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccc-------------------------------cCCceeEEEEEEEEEeCC
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFS-------------------------------EAGGITQHIGAYNVVTNH 115 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~-------------------------------~~~giT~~~~~~~~~~~~ 115 (1527)
....+|+++||+|||||||+++|.+...... ..+|+|++.....+.+.+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 4567999999999999999999986643211 136899999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC-------CcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHH
Q psy1758 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG-------VMPQTREAIAHAKISGVP-LIVAINKIDKLDINLDR 187 (1527)
Q Consensus 116 ~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g-------~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~ 187 (1527)
.+++|||||||++|...+..+++.+|++|+|||++++ ..+|+.+++..+...++| +|+|+||+|+.+.+...
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~ 324 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 324 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence 9999999999999999999999999999999999986 568999999999888877 99999999998633222
Q ss_pred ---HHHHHhhhcccccccC---CCCcEEEeeccCCCChhHHHHH-----------HHHHHHHH--h-----hcCCCCCCC
Q psy1758 188 ---IKQDLISEQVIPEEYG---GASPFISISAKTGVGINKLLEN-----------ISLQAEIL--E-----LKAPVTTPA 243 (1527)
Q Consensus 188 ---~~~~l~~~~~~~~~~~---~~~~v~~iSAktg~gI~eL~~~-----------l~~~~~~~--~-----~~~~~~~p~ 243 (1527)
....+... ...++ ..++++++||++|.|++++... |....+.. . ...+.+.|+
T Consensus 325 ~~ei~~~l~~~---l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~ 401 (611)
T 3izq_1 325 FEEIKSKLLPY---LVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPF 401 (611)
T ss_dssp HHHHHHHHHHH---HHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCC
T ss_pred HHHHHHHHHHH---HHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccch
Confidence 22222111 11111 1368999999999999976321 22111111 1 112345688
Q ss_pred ceEEEEEeecC---CCceEEEEEeeccEEEeccEEEecce--eeeEeEeeccC-------CceeeecCCCcceEe--cCC
Q psy1758 244 KGVIIESRLDK---GKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRSMLNEN-------GKNILEAGPSIPVEI--QGL 309 (1527)
Q Consensus 244 ~~~v~~~~~~~---~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~i~~~~-------g~~v~~a~~~~~v~I--~gl 309 (1527)
+..|.+++..+ +.|+|++|+|.+|+|++||.|++++. ..+|++|..++ ...+.+|.||+.|.+ .|+
T Consensus 402 r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~ 481 (611)
T 3izq_1 402 LFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKA 481 (611)
T ss_dssp EEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSC
T ss_pred hhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccccceecCCCcceEEeeec
Confidence 88899998877 58999999999999999999998764 56899998774 467899999998887 444
Q ss_pred CCCC-CCCCeEEEe
Q psy1758 310 TKVP-FSGEELFVI 322 (1527)
Q Consensus 310 ~~~~-~~G~~~~~~ 322 (1527)
.... .+|+++...
T Consensus 482 ~~~di~rGdvl~~~ 495 (611)
T 3izq_1 482 YPEDIQNGDLAASV 495 (611)
T ss_dssp CTTSCCTTCEEBCS
T ss_pred cHhhCcceEEccCC
Confidence 3222 789987643
|
| >1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-26 Score=229.32 Aligned_cols=113 Identities=31% Similarity=0.584 Sum_probs=95.1
Q ss_pred cccchhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecC--ChhhHHHHHHHHHHhhHHHHHHHhcc
Q psy1758 540 ERLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFN--KDISIKNILDNLSKAKNYIRFKLSKK 617 (1527)
Q Consensus 540 gr~~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~--~~~~~~~~~~~l~~~~g~ir~~l~~~ 617 (1527)
.|..|+.+.|+++|+++++++++||++++||||+|+||+||++|+||||++| ++.+.++++++|++|+||||++||++
T Consensus 6 ~R~~Rv~~~i~~~ls~il~~eikDprl~~vtVt~V~vS~Dl~~AkVyvs~~g~~~~~~~~~~~~~L~~a~g~iR~~l~~~ 85 (128)
T 1jos_A 6 KRSDRVAQEIQKEIAVILQREVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGKA 85 (128)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCCCTTTCCEEEEEEEECTTSCEEEEEEEESCCSCHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHccCCccCceEEeEEEECCCCCEEEEEEEeCCCCchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4778999999999999999999999999999999999999999999999998 67777899999999999999999999
Q ss_pred cccccCCeEEEEeccchhhHHHHHHHHhhcccccc
Q psy1758 618 LHIHTLPILNFFYDNSIENAMMISKLIDGIKYCMQ 652 (1527)
Q Consensus 618 l~lr~~P~l~F~~D~s~~~~~~i~~ll~~i~~~~~ 652 (1527)
++||++|+|+|++|+|++++.+|++||++++.+..
T Consensus 86 l~lr~~PeL~F~~D~s~e~~~~i~~Ll~~~~~~~~ 120 (128)
T 1jos_A 86 MRLRIVPEIRFIYDQSLVEGMRMSNLVTNVVREDE 120 (128)
T ss_dssp HCCSSCCEEEEEECCCCCCCC--------------
T ss_pred cCCCcCCeEEEEEcCcHHHHHHHHHHHHHHHhcch
Confidence 99999999999999999999999999999876543
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-24 Score=262.06 Aligned_cols=251 Identities=26% Similarity=0.311 Sum_probs=183.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccc-cCCceeEEE--------------EEEEE-----EeCCeEEEEEeCCCh
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFS-EAGGITQHI--------------GAYNV-----VTNHGSITFLDTPGH 126 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~-~~~giT~~~--------------~~~~~-----~~~~~~i~~iDTPG~ 126 (1527)
.+.++|+++||+|||||||+++|++...... .....+... ..... ......++|||||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 3568999999999999999999987532110 000011000 00000 011257999999999
Q ss_pred hhHHHHHHhhccccCEEEEEEeCCCCC-cHHHHHHHHHHHHcCC-CEEEEEEcccCCcchhH-HHHHHHhhhcccccccC
Q psy1758 127 EAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHAKISGV-PLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYG 203 (1527)
Q Consensus 127 e~f~~~~~~~~~~aD~~IlVvda~~g~-~~qt~e~i~~~~~~~v-piIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~ 203 (1527)
++|..++..+++.+|++++|+|++++. .+|+.+++..+...+. |+++|+||+|+.+.+.. ....++... ......
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~--l~~~~~ 163 (403)
T 3sjy_A 86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQF--TKGTWA 163 (403)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHH--HTTSTT
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHH--HHhhCC
Confidence 999999999999999999999999987 8999999998887776 79999999999874421 222222211 111123
Q ss_pred CCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCC--------CceEEEEEeeccEEEeccEE
Q psy1758 204 GASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKG--------KGPVATVLIQSGTLRCSDIV 275 (1527)
Q Consensus 204 ~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~--------~G~v~~~~v~~G~l~~gd~v 275 (1527)
..++++++||++|.|+++|++.|... +.....+.+.|+...|.+++...+ +|+|++++|.+|++++||.|
T Consensus 164 ~~~~ii~vSA~~g~gi~~L~~~l~~~--l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v 241 (403)
T 3sjy_A 164 ENVPIIPVSALHKINIDSLIEGIEEY--IKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEI 241 (403)
T ss_dssp TTCCEEECBTTTTBSHHHHHHHHHHH--SCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCEE
T ss_pred CCCEEEEEECCCCcChHHHHHHHHHh--CCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCEE
Confidence 35799999999999999999999743 233344556788999998876444 89999999999999999999
Q ss_pred Eecce--------------eeeEeEeeccCCceeeecCCCcceEec-----CCCCCC-CCCCeEEEe
Q psy1758 276 VAGAS--------------YGRIRSMLNENGKNILEAGPSIPVEIQ-----GLTKVP-FSGEELFVI 322 (1527)
Q Consensus 276 v~g~~--------------~~kVr~i~~~~g~~v~~a~~~~~v~I~-----gl~~~~-~~G~~~~~~ 322 (1527)
++++. ..+|++|+. +++++.+|.||+.+.+. ++..-. .+|+++..-
T Consensus 242 ~~~p~~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G~vl~~~ 307 (403)
T 3sjy_A 242 KVLPGLRVEKQGKVSYEPIFTKISSIRF-GDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLA 307 (403)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEEE-TTEEESEECSSSCEEEEESSCHHHHGGGTTTTCEEEET
T ss_pred EEeCCcccccccccccccccEEEEEEEE-CCEEcCEEeCCCEEEEEeccccccchhhhccccEEeCC
Confidence 88543 369999976 46789999999999884 221111 578877643
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-24 Score=267.93 Aligned_cols=334 Identities=18% Similarity=0.216 Sum_probs=227.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccc----------------------cccCCceeEEEEEEEEEeCCeEEEEEeCCC
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVV----------------------FSEAGGITQHIGAYNVVTNHGSITFLDTPG 125 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~----------------------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG 125 (1527)
+..+|+++||+|||||||+++|...... .....|+|++.....+.+.+..++||||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 5578999999999999999999863211 112346666666777888999999999999
Q ss_pred hhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcc--------
Q psy1758 126 HEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQV-------- 197 (1527)
Q Consensus 126 ~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~-------- 197 (1527)
|++|...+.++++.+|++|+|+|+++++..|+.+++..+...++|+++|+||+|+...+..+...++.....
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~~~~ 171 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITW 171 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESEE
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCccceec
Confidence 999999999999999999999999999999999999999888999999999999987655333333221100
Q ss_pred ---------------------ccc---------------------------------------------------ccCCC
Q psy1758 198 ---------------------IPE---------------------------------------------------EYGGA 205 (1527)
Q Consensus 198 ---------------------~~~---------------------------------------------------~~~~~ 205 (1527)
+.. ..+..
T Consensus 172 pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~ 251 (529)
T 2h5e_A 172 PIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEI 251 (529)
T ss_dssp EESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHHTTSE
T ss_pred ceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHHhCce
Confidence 000 00123
Q ss_pred CcEEEeeccCCCChhHHHHHHHHHHHHHhhc-------CCCCCCCceEEEEEee---cCCCceEEEEEeeccEEEeccEE
Q psy1758 206 SPFISISAKTGVGINKLLENISLQAEILELK-------APVTTPAKGVIIESRL---DKGKGPVATVLIQSGTLRCSDIV 275 (1527)
Q Consensus 206 ~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~-------~~~~~p~~~~v~~~~~---~~~~G~v~~~~v~~G~l~~gd~v 275 (1527)
+|+++.||++|.||++|++.+......+... .+.+.|+.++|++... ++++|++++++|.+|+|++||.|
T Consensus 252 ~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~~RV~sG~l~~g~~v 331 (529)
T 2h5e_A 252 TPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKL 331 (529)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEEEEEEESCEETTCEE
T ss_pred eEEEeeecccCCCHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEEEEEecCeEcCCCEE
Confidence 5899999999999999999997543111000 0114678899999875 35689999999999999999999
Q ss_pred Eecc--eeeeEeEeeccC---CceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhh
Q psy1758 276 VAGA--SYGRIRSMLNEN---GKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLH 350 (1527)
Q Consensus 276 v~g~--~~~kVr~i~~~~---g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~ 350 (1527)
.+.+ ...||.+++... ...+.+|.||+.+.+.|++.. ..||.+..-.. +.
T Consensus 332 ~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~-~~Gdtl~~~~~------~~------------------ 386 (529)
T 2h5e_A 332 RQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTI-QIGDTFTQGEM------MK------------------ 386 (529)
T ss_dssp EETTTTEEEECSCEECCCC-----CCEECTTCEEEECCSSCC-CTTCEEESSCC------CC------------------
T ss_pred EEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEEeccCCC-ccCCEeecCCc------cc------------------
Confidence 8854 346777776654 466889999999999999876 67998872210 00
Q ss_pred hhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEeeccCcCChhhHHHHHhcCCEEEEeCCCCCh
Q psy1758 351 KTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIASKAIIIGFNVRADA 430 (1527)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~~~vG~it~~Dv~~A~~~~a~Ii~Fnv~~~~ 430 (1527)
++. + ..-.+.+..-|.+...+..+.+.++|.++..+. .+.+.... .++..|+++==...-
T Consensus 387 -~~~----~-~~~~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed-~~~~~~~~-------------~t~~~il~~~Gelhl 446 (529)
T 2h5e_A 387 -FTG----I-PNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEG-AVQVFRPI-------------SNNDLIVGAVGVLQF 446 (529)
T ss_dssp -BCC----C-EEECCSEEEEEEESCC---CTHHHHHHHHHHTT-SCEEEEET-------------TSCCEEEEESSTHHH
T ss_pred -cCC----C-CCCCccEEEEEEECChHHHHHHHHHHHHHHhhC-CEEEEEeC-------------CCCcEEEEEECHHHH
Confidence 000 0 001134556677777777888888887775443 35543321 234666665333333
Q ss_pred hH--HHHHHhCCCeEEEe
Q psy1758 431 ST--RKLAQINNINIRYH 446 (1527)
Q Consensus 431 ~~--~~~a~~~~V~i~~~ 446 (1527)
++ ..+.++.||++...
T Consensus 447 ev~~~rl~~ey~v~v~~~ 464 (529)
T 2h5e_A 447 DVVVARLKSEYNVEAVYE 464 (529)
T ss_dssp HHHHHHHHHHSSCCEEEE
T ss_pred HHHHHHHHHHhCcEEEEe
Confidence 32 34444556665554
|
| >1pa4_A Probable ribosome-binding factor A; structural genomics, distant homology, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Mycoplasma pneumoniae} SCOP: d.52.7.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-26 Score=227.75 Aligned_cols=110 Identities=25% Similarity=0.408 Sum_probs=92.9
Q ss_pred cccchhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecCChhhHHHHHHHHHHhhHHHHHHHhcccc
Q psy1758 540 ERLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLSKKLH 619 (1527)
Q Consensus 540 gr~~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~~~~~~~~~~~~l~~~~g~ir~~l~~~l~ 619 (1527)
.|..|.++.++++|+++++++++||++++||||+|+||+||++|+||||++|+++ .++++++|++|+||||++||++++
T Consensus 4 ~R~~Rv~~~i~~~ls~il~~eikDprl~~vtVt~V~vs~Dl~~AkVyvs~~~~~~-~~~~~~~L~~a~g~iR~~l~~~l~ 82 (116)
T 1pa4_A 4 YKKERLENDIIRLINRTVIHEIYNETVKTGHVTHVKLSDDLLHVTVYLDCYNREQ-IDRVVGAFNQAKGVFSRVLAHNLY 82 (116)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSSSSCHHHHCCSCCEEETTTTEEEECCCCSSSSS-HHHHHHHHHHTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcccCceEEeEEEECCCCCEEEEEEEeCCchh-HHHHHHHHHHhHHHHHHHHHhhcC
Confidence 3778999999999999999999999999999999999999999999999998764 689999999999999999999999
Q ss_pred cccCCeEEEEeccchhhHHHHHHHHhhcccc
Q psy1758 620 IHTLPILNFFYDNSIENAMMISKLIDGIKYC 650 (1527)
Q Consensus 620 lr~~P~l~F~~D~s~~~~~~i~~ll~~i~~~ 650 (1527)
||++|+|+|++|+|+|++.+|++||++++.+
T Consensus 83 lr~~PeL~F~~D~s~e~~~~i~~Ll~~~~~~ 113 (116)
T 1pa4_A 83 LAKAVQIHFVKDKAIDNAMRIESIINSLKKS 113 (116)
T ss_dssp CGGGCCCEECSSSTTSSCC------------
T ss_pred CccCCeEEEEECCcHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998653
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-24 Score=275.39 Aligned_cols=301 Identities=20% Similarity=0.205 Sum_probs=229.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccccccc------------------CCceeEEEEEEEEEeCCeEEEEEeCCChhh
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSE------------------AGGITQHIGAYNVVTNHGSITFLDTPGHEA 128 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~------------------~~giT~~~~~~~~~~~~~~i~~iDTPG~e~ 128 (1527)
.+..+|+|+||+|||||||+++|......... ..++|.......+.+.+..++|||||||++
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 35578999999999999999999843321100 236677777777888899999999999999
Q ss_pred HHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc----------
Q psy1758 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI---------- 198 (1527)
Q Consensus 129 f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~---------- 198 (1527)
|...+.++++.+|++++|+|+++++..++.+++..+...++|+++|+||+|+. ....+...++......
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~~~~~~~~Pi~~ 165 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLGPILPIDLPLYE 165 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHCSEEECEEEEEE
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhCCcceEEeeecC
Confidence 99999999999999999999999999999999999999999999999999998 6555554444321110
Q ss_pred ----------------------------cc-----------------------------------------------ccC
Q psy1758 199 ----------------------------PE-----------------------------------------------EYG 203 (1527)
Q Consensus 199 ----------------------------~~-----------------------------------------------~~~ 203 (1527)
+. ..+
T Consensus 166 ~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~~~ 245 (665)
T 2dy1_A 166 GGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRRG 245 (665)
T ss_dssp TTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTT
T ss_pred CCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhC
Confidence 00 001
Q ss_pred CCCcEEEeeccCCCChhHHHHHHHHHHHHHhhcCC-CCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceee
Q psy1758 204 GASPFISISAKTGVGINKLLENISLQAEILELKAP-VTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYG 282 (1527)
Q Consensus 204 ~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~~~-~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~ 282 (1527)
..+|++++||++|.||++||+.|..... .+... .+.|+.++|++...+++.|++++++|++|+|++||.|.+.+...
T Consensus 246 ~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp--~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~~v~~~~~~~ 323 (665)
T 2dy1_A 246 LLYPVALASGEREIGVLPLLELILEALP--SPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQV 323 (665)
T ss_dssp SCEEEEECBTTTTBSHHHHHHHHHHHSC--CHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCTTSCE
T ss_pred CeeEEEEeecccCcCHHHHHHHHHHhCC--CccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecCCEEEcCCCeE
Confidence 2368999999999999999999975421 11111 46789999999999999999999999999999999998876556
Q ss_pred eEeEeeccC---CceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHHhhhhhhhHHHhh
Q psy1758 283 RIRSMLNEN---GKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQKLHKTENMFNDI 359 (1527)
Q Consensus 283 kVr~i~~~~---g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1527)
+|.+++... ..++.+|.+|+.+.|.|++.. ..||.+....+.. ...+.. +
T Consensus 324 ~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~-~~Gdtl~~~~~~~----------------------~~~l~~----~ 376 (665)
T 2dy1_A 324 RLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGL-HRGMVLWQGEKPE----------------------SEEVPF----A 376 (665)
T ss_dssp EESSEEEEETTEEEEESCEETTCEEEESSCTTC-CTTCEEESSSCCC----------------------GGGSCC----C
T ss_pred EEeEEEEEeCCCeeECCEECCCCEEEEeCCccC-ccCCEEecCCCcc----------------------ccccCC----C
Confidence 777766544 467889999999999999886 6999887322210 000110 1
Q ss_pred ccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeE
Q psy1758 360 NKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQV 398 (1527)
Q Consensus 360 ~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~i 398 (1527)
. -....+.+-|.+...+..+.+.++|.++..+...+++
T Consensus 377 ~-~~~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v 414 (665)
T 2dy1_A 377 R-LPDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKL 414 (665)
T ss_dssp C-CCCCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred C-CCCceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEE
Confidence 1 1125678889999999999999999988544444444
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-24 Score=276.27 Aligned_cols=300 Identities=22% Similarity=0.253 Sum_probs=218.7
Q ss_pred CCEEEEEecCCCChhHHHHHHHcccc------------------ccccCCceeEEEEEEEEEeC-------CeEEEEEeC
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNV------------------VFSEAGGITQHIGAYNVVTN-------HGSITFLDT 123 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~------------------~~~~~~giT~~~~~~~~~~~-------~~~i~~iDT 123 (1527)
-.+|+|+||++||||||+++|..... ......|||+......+.|. ++.++|+||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 35799999999999999999853221 12334689998888888875 468999999
Q ss_pred CChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc-----
Q psy1758 124 PGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI----- 198 (1527)
Q Consensus 124 PG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~----- 198 (1527)
|||.+|.....++++.+|++|+|+|+.+|+++||...|+++...++|+++|+||+|+..++......++......
T Consensus 93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~~~~~~ 172 (709)
T 4fn5_A 93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGHTPVPV 172 (709)
T ss_dssp CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCSCEEES
T ss_pred CCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhcccceeee
Confidence 999999999999999999999999999999999999999999999999999999999887765555444221000
Q ss_pred --------------------------------------------------------------------------------
Q psy1758 199 -------------------------------------------------------------------------------- 198 (1527)
Q Consensus 199 -------------------------------------------------------------------------------- 198 (1527)
T Consensus 173 ~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~~~~~ 252 (709)
T 4fn5_A 173 QLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSEAEIK 252 (709)
T ss_dssp EEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCHHHHH
T ss_pred ecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccHHHHH
Confidence
Q ss_pred -----ccccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHh------------------hcCCCCCCCceEEEEEeecCC
Q psy1758 199 -----PEEYGGASPFISISAKTGVGINKLLENISLQAEILE------------------LKAPVTTPAKGVIIESRLDKG 255 (1527)
Q Consensus 199 -----~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~------------------~~~~~~~p~~~~v~~~~~~~~ 255 (1527)
....+...|++..||.++.|+..|++.+......+. ...+++.|+.++|++...++.
T Consensus 253 ~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~ 332 (709)
T 4fn5_A 253 EGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPF 332 (709)
T ss_dssp HHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCBTT
T ss_pred HHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCcceEEEEEeecccC
Confidence 000123468999999999999999999975421110 012345788999999999999
Q ss_pred CceEEEEEeeccEEEeccEEEecce--eeeEeEee---ccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHH
Q psy1758 256 KGPVATVLIQSGTLRCSDIVVAGAS--YGRIRSML---NENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKARE 330 (1527)
Q Consensus 256 ~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~i~---~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~ 330 (1527)
.|.++.++|++|+|++||.|.+... ..+|..++ .....++.++.+|+.+.|.|++.+ ..||.+.......
T Consensus 333 ~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~-~~gdTl~~~~~~~---- 407 (709)
T 4fn5_A 333 VGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDV-TTGDTLCSIEKPI---- 407 (709)
T ss_dssp TBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEECSCSSC-CTTCEEECSSSCC----
T ss_pred CCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceeeEeeeecCCCeeeecCCCcC-ccCCEecCCCccc----
Confidence 9999999999999999999876432 33444444 444467899999999999999875 7899886332210
Q ss_pred HHHHhhhchHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeE
Q psy1758 331 IGLFRQGKFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQV 398 (1527)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~i 398 (1527)
.+..+. . ....+.+-|.+...+..+.+.+.|.++..+...+.+
T Consensus 408 --------------------~~~~~~--~---~~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v 450 (709)
T 4fn5_A 408 --------------------ILERMD--F---PEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRV 450 (709)
T ss_dssp --------------------BCC---------CCCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEE
T ss_pred --------------------cCCCCC--C---CCcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEE
Confidence 000000 0 124466778888888999999999888544333333
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-26 Score=289.87 Aligned_cols=237 Identities=27% Similarity=0.318 Sum_probs=188.9
Q ss_pred CEEEEEecCCCChhHHHHHHHcccccc------------------ccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVF------------------SEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~------------------~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~ 131 (1527)
.+|+|+||+|||||||+++|....... ....|||+......+.|++++++|+|||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 469999999999999999985322111 11238999988899999999999999999999999
Q ss_pred HHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc-------------
Q psy1758 132 MRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI------------- 198 (1527)
Q Consensus 132 ~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~------------- 198 (1527)
.+.++++.+|++|+|+|+.+|+++||..+|+++...++|.|+++||+|+..++......++......
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 162 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPN 162 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCSCGG
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeEeecc
Confidence 9999999999999999999999999999999999999999999999999887766655544321100
Q ss_pred -------------------------------------------ccccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhh
Q psy1758 199 -------------------------------------------PEEYGGASPFISISAKTGVGINKLLENISLQAEILEL 235 (1527)
Q Consensus 199 -------------------------------------------~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~ 235 (1527)
....+...|+++.||+++.||+.|++.+.... ..+
T Consensus 163 ~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~--p~p 240 (638)
T 3j25_A 163 VCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF--YSS 240 (638)
T ss_dssp GCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC--CCS
T ss_pred ccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc--cCc
Confidence 00012357999999999999999999996432 222
Q ss_pred cCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc-eeeeEeEeeccCC---ceeeecCCCcceEecC
Q psy1758 236 KAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA-SYGRIRSMLNENG---KNILEAGPSIPVEIQG 308 (1527)
Q Consensus 236 ~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~-~~~kVr~i~~~~g---~~v~~a~~~~~v~I~g 308 (1527)
....+.|+.+.|++...+++.|.+++++|++|+|+.||.|.+.. ...+|..++...+ .++.++.+|+.+.+.|
T Consensus 241 ~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g 317 (638)
T 3j25_A 241 THRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEKIKVTEMYTSINGELCKIDRAYSGEIVILQN 317 (638)
T ss_dssp GGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCCCSSBCCCCSSCCCCBSCCCTTBCCCCSCCCS
T ss_pred ccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccCcceeEEeeecccccccccccccccceEEEEec
Confidence 22345688999999999999999999999999999999986643 3456666665555 4567788888777765
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-23 Score=267.99 Aligned_cols=301 Identities=22% Similarity=0.243 Sum_probs=223.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccc--cc----------------cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTN--VV----------------FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAF 129 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~--~~----------------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f 129 (1527)
+..+|+|+||+|||||||+++|.... +. ....+++|+......+.+++..++|||||||.+|
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 45789999999999999999997421 10 0113577887777888899999999999999999
Q ss_pred HHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc-----------
Q psy1758 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI----------- 198 (1527)
Q Consensus 130 ~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~----------- 198 (1527)
...+.++++.+|++|+|+|++++...++...|..+...++|+++|+||+|+...+..+....+......
T Consensus 89 ~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~~ipisa 168 (693)
T 2xex_A 89 TVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGA 168 (693)
T ss_dssp CHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEESEEEECC
T ss_pred HHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCceeEEeeccc
Confidence 999999999999999999999999999999999999999999999999999876654444433221000
Q ss_pred ------------------c-c-----------------------------------------------------------
Q psy1758 199 ------------------P-E----------------------------------------------------------- 200 (1527)
Q Consensus 199 ------------------~-~----------------------------------------------------------- 200 (1527)
. .
T Consensus 169 ~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~~~~ 248 (693)
T 2xex_A 169 EDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIRQAT 248 (693)
T ss_dssp GGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 0 0
Q ss_pred ccCCCCcEEEeeccCCCChhHHHHHHHHHHHHHhhc------------------CCCCCCCceEEEEEeecCCCceEEEE
Q psy1758 201 EYGGASPFISISAKTGVGINKLLENISLQAEILELK------------------APVTTPAKGVIIESRLDKGKGPVATV 262 (1527)
Q Consensus 201 ~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~~~~~~------------------~~~~~p~~~~v~~~~~~~~~G~v~~~ 262 (1527)
..+..+|+++.||++|.|++.|++.+......+... .+.+.|+.++|++...+++.|.++++
T Consensus 249 ~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~g~~~~~ 328 (693)
T 2xex_A 249 TNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFF 328 (693)
T ss_dssp HTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTTEEEEEE
T ss_pred HhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEEeeecCCCceEEEE
Confidence 001236899999999999999999997553211110 12467899999999999999999999
Q ss_pred EeeccEEEeccEEEecc--eeeeEeEeeccCC---ceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhh
Q psy1758 263 LIQSGTLRCSDIVVAGA--SYGRIRSMLNENG---KNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQG 337 (1527)
Q Consensus 263 ~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g---~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~ 337 (1527)
+|++|+|+.||.|.+.. ...+|.+++...| .++.++.+|+.+.|.|++.. ..||.+..-.+.
T Consensus 329 RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~GdTl~~~~~~------------ 395 (693)
T 2xex_A 329 RVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDT-GTGDTLCGEKND------------ 395 (693)
T ss_dssp EEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEESCSSC-CTTCEEEETTCC------------
T ss_pred EEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEccccCcCCEEEEeCcccC-ccCCEEecCCCc------------
Confidence 99999999999998754 3356666655544 56889999999999999887 679988732211
Q ss_pred chHHHHHHHHhhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeE
Q psy1758 338 KFRDVKLSKQKLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQV 398 (1527)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~i 398 (1527)
..+.. +. -....+.+-|.+...+..+.+.++|.++..+...+.+
T Consensus 396 ------------~~~~~----~~-~~~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~ 439 (693)
T 2xex_A 396 ------------IILES----ME-FPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHA 439 (693)
T ss_dssp ------------EECCC----CS-SCSCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred ------------cccCC----cC-CCCceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEE
Confidence 00010 10 1125567778888888899999999988544434444
|
| >1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-24 Score=202.63 Aligned_cols=85 Identities=46% Similarity=0.830 Sum_probs=82.3
Q ss_pred eeeeeeEeEEEeEEEEcCCCCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccccchhhh
Q psy1758 468 KKENLLGLAEIRQVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLSRIEN 547 (1527)
Q Consensus 468 ~~e~~~g~a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~r~~~ 547 (1527)
++|+++|+|+|+++|++||.|+||||+|++|++++|+.+||+|||++||+|+|.||||||+||+||++|+|||+.+..|+
T Consensus 1 ~~E~~~G~AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~~~ 80 (99)
T 1d1n_A 1 YEEKVIGQAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKNFN 80 (99)
T ss_dssp CCCCEEEEEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTTCS
T ss_pred CeEEEEEEEEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcCcC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhh
Q psy1758 548 QIQRD 552 (1527)
Q Consensus 548 ~i~~~ 552 (1527)
+|+..
T Consensus 81 dik~G 85 (99)
T 1d1n_A 81 DIKEG 85 (99)
T ss_dssp SCSSC
T ss_pred CCCCC
Confidence 99873
|
| >2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-24 Score=208.67 Aligned_cols=99 Identities=23% Similarity=0.450 Sum_probs=94.0
Q ss_pred cccchhhhhhhhhhHHhhhhhccCcce--eeeEEEEEEEeCCcceEEEEEEecCChhhHHHHHHHHHHhhHHHHHHHhcc
Q psy1758 540 ERLSRIENQIQRDISEIIAFDIQNPII--NIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLSKK 617 (1527)
Q Consensus 540 gr~~r~~~~i~~~Iseii~~ei~d~~~--~~vtvt~V~~s~Dl~~a~vy~s~~~~~~~~~~~~~~l~~~~g~ir~~l~~~ 617 (1527)
.|..|.++.|+++|+++ +++++||++ ++||||+|+||+||++|+||||++|++++.++++++|++|+||||++||++
T Consensus 6 ~R~~Rv~~~i~~~ls~i-~~eikDprl~~~~vtVt~V~vs~Dl~~AkVyvs~~g~~~~~~~~~~~L~~a~g~iR~~l~~~ 84 (106)
T 2kzf_A 6 YRKAMLESEIQKLLMEA-LQQLRDPRLKKDFVTFSRVELSKDKRYADVYVSFLGTPEERKETVEILNRAKGFFRTFIAKN 84 (106)
T ss_dssp TTTHHHHHHHHHHHHHH-HHTTCCSSCCGGGCCEEEEEECTTSCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHhccCccccCCceEEEEEEECCCCCEEEEEEEeCCChhhHHHHHHHHHHhHHHHHHHHHhh
Confidence 37789999999999999 999999999 899999999999999999999999977778999999999999999999999
Q ss_pred cccccCCeEEEEeccchhhHHH
Q psy1758 618 LHIHTLPILNFFYDNSIENAMM 639 (1527)
Q Consensus 618 l~lr~~P~l~F~~D~s~~~~~~ 639 (1527)
++||++|+|+|++|+|+|++.+
T Consensus 85 l~lr~~P~L~F~~D~s~e~~~~ 106 (106)
T 2kzf_A 85 LRLYVAPEIRFYEDKGIEASVK 106 (106)
T ss_dssp SCSSSCCEEEEESSCCCTTCCC
T ss_pred cCCccCCeEEEEECCchhhhcC
Confidence 9999999999999999998753
|
| >2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-24 Score=206.10 Aligned_cols=88 Identities=28% Similarity=0.536 Sum_probs=84.8
Q ss_pred CcceeeeeeEeEEEeEEEEcCCCCe---EEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccc
Q psy1758 465 PLEKKENLLGLAEIRQVILVNKVSK---IAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECER 541 (1527)
Q Consensus 465 ~~~~~e~~~g~a~v~~vF~~~k~~~---iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr 541 (1527)
.|.++|+++|+|+|+++|++++.|+ ||||+|++|+|++|+.+||+|||++||+|+|.||||||+||+||++|+|||+
T Consensus 2 ~~~~~E~v~G~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi 81 (120)
T 2crv_A 2 SSGSSGYPIGEASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGL 81 (120)
T ss_dssp CCSCSSCEEEEEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEE
T ss_pred CCCcEEEEEEEEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEE
Confidence 4788999999999999999998888 9999999999999999999999999999999999999999999999999999
Q ss_pred cchhhh-hhhhh
Q psy1758 542 LSRIEN-QIQRD 552 (1527)
Q Consensus 542 ~~r~~~-~i~~~ 552 (1527)
.+..|+ +|+..
T Consensus 82 ~l~~fniDik~G 93 (120)
T 2crv_A 82 SLDEEKVEFKPG 93 (120)
T ss_dssp ECSCTTSCCCTT
T ss_pred EEccCCCCCCCC
Confidence 999999 99873
|
| >2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-24 Score=219.03 Aligned_cols=113 Identities=12% Similarity=0.224 Sum_probs=104.9
Q ss_pred cccccchhhhhhhhhhHHhhhhhccCccee--eeEEEEEEEeCCcceEEEEEEecCChhhHHHHHHHHHHhhHHHHHHHh
Q psy1758 538 ECERLSRIENQIQRDISEIIAFDIQNPIIN--IITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLS 615 (1527)
Q Consensus 538 ecgr~~r~~~~i~~~Iseii~~ei~d~~~~--~vtvt~V~~s~Dl~~a~vy~s~~~~~~~~~~~~~~l~~~~g~ir~~l~ 615 (1527)
+..|..|+++.|+++|++++++++.||++. +||||+|+||+||++|+||||+++++.+.+.++++|++|+||||++||
T Consensus 11 ~s~R~~Rv~~~i~~~ls~il~~~~~dp~l~~~~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L~~a~g~iR~~l~ 90 (129)
T 2e7g_A 11 DHARLRALNGLLYKALTDLLCTPEVSQELYDLNVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVLQRSAAHMRHLLM 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTTCHHHHHHTCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccCccccCCeeEEEEEEECCCCcEEEEEEEecCChhhHHHHHHHHHHhHHHHHHHHH
Confidence 456888999999999999999999999997 899999999999999999999665666668899999999999999999
Q ss_pred cccccccCCeEEEEeccchhhHHHHHHHHhhcccc
Q psy1758 616 KKLHIHTLPILNFFYDNSIENAMMISKLIDGIKYC 650 (1527)
Q Consensus 616 ~~l~lr~~P~l~F~~D~s~~~~~~i~~ll~~i~~~ 650 (1527)
++++||++|+|+|++|+|++++.+|++||++++..
T Consensus 91 ~~l~lr~~PeL~F~~D~s~e~~~~i~~LL~~~~~~ 125 (129)
T 2e7g_A 91 SQQTLRNVPPIVFVQDKGNAALAELDQLLAVADSG 125 (129)
T ss_dssp TCTTCSCCCCEEEEETTCCCCCCCCCCCSCCCCCC
T ss_pred hhcCCccCCeEEEEEcCCHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999998754
|
| >2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain; 1.84A {Thermus thermophilus} SCOP: d.52.7.1 PDB: 2r1c_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-23 Score=197.95 Aligned_cols=91 Identities=22% Similarity=0.409 Sum_probs=87.4
Q ss_pred ccchhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecCChhhHHHHHHHHHHhhHHHHHHHhccccc
Q psy1758 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLSKKLHI 620 (1527)
Q Consensus 541 r~~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~~~~~~~~~~~~l~~~~g~ir~~l~~~l~l 620 (1527)
|..|.++.++++|++++ ++++||++++||||+|+||+||++|+||||++|+ .++++++|++|+||||++||++++|
T Consensus 4 R~~Rv~~~i~~~ls~il-~ei~Dprl~~vtVt~V~vs~Dl~~AkVyvs~~~~---~~~~~~~L~~a~g~iR~~l~~~l~l 79 (95)
T 2dyj_A 4 GKAHLEAQLKRALAEEI-QALEDPRLFLLTVEAVRLSKDGSVLSVYVEAFRE---EEGALRALSRAERRLVAALARRVRM 79 (95)
T ss_dssp CHHHHHHHHHHHHHHHH-HTCCCGGGTTCEEEEEEECTTSSEEEEEEECSSC---HHHHHHHHHHTHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHH-HHhcCcccCcEEEEEEEECCCCCEEEEEEEeCCC---HHHHHHHHHHhHHHHHHHHHhhcCC
Confidence 66789999999999999 9999999999999999999999999999999987 5789999999999999999999999
Q ss_pred ccCCeEEEEeccchh
Q psy1758 621 HTLPILNFFYDNSIE 635 (1527)
Q Consensus 621 r~~P~l~F~~D~s~~ 635 (1527)
|++|+|+|++|+|+|
T Consensus 80 r~~P~L~F~~D~s~e 94 (95)
T 2dyj_A 80 RRLPRLEFLPWRASP 94 (95)
T ss_dssp SSCCEEEEEEGGGCC
T ss_pred ccCCeEEEEEcCCCC
Confidence 999999999999987
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-22 Score=215.61 Aligned_cols=167 Identities=65% Similarity=0.972 Sum_probs=142.2
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
..+.++|+++|++|+|||||+++|.+..+...+.+++|.+.....+.+++..+.+|||||++.|..++.+++..+|++++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 35778999999999999999999999988877778888887777888899999999999999999988899999999999
Q ss_pred EEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHH
Q psy1758 146 VVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLEN 225 (1527)
Q Consensus 146 Vvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~ 225 (1527)
|+|++++...++.+.+..+...++|+++|+||+|+...+..+....+.........++..++++++||++|.|+++++++
T Consensus 85 v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 164 (178)
T 2lkc_A 85 VVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEM 164 (178)
T ss_dssp EEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHH
Confidence 99999998899999988888889999999999999875544444444433444444554578999999999999999999
Q ss_pred HHHHHHH
Q psy1758 226 ISLQAEI 232 (1527)
Q Consensus 226 l~~~~~~ 232 (1527)
|......
T Consensus 165 l~~~~~~ 171 (178)
T 2lkc_A 165 ILLVSEM 171 (178)
T ss_dssp HHHHHHH
T ss_pred HHHhhhh
Confidence 9876544
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.1e-20 Score=241.21 Aligned_cols=303 Identities=20% Similarity=0.222 Sum_probs=200.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-c---------------cccCCceeEEEEEEEEEeC----------------C
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-V---------------FSEAGGITQHIGAYNVVTN----------------H 115 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-~---------------~~~~~giT~~~~~~~~~~~----------------~ 115 (1527)
+..+|+|+||+|||||||+++|..... . .....|+|+......+.+. +
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 346899999999999999999976421 1 1123456665555555554 5
Q ss_pred eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcc----hhH-----
Q psy1758 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDI----NLD----- 186 (1527)
Q Consensus 116 ~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~----~~~----- 186 (1527)
..++|||||||++|...+.++++.+|++|+|+|+++++..|+...|..+...++|+++|+||+|+... +.+
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e~~~~ 177 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQT 177 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHHHHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHHHHHH
Confidence 68999999999999999999999999999999999999999999999888889999999999998732 111
Q ss_pred --HHHHHHhhhcc--cc---cc--cC-CCCcEEEeeccCCCCh-------------------------------------
Q psy1758 187 --RIKQDLISEQV--IP---EE--YG-GASPFISISAKTGVGI------------------------------------- 219 (1527)
Q Consensus 187 --~~~~~l~~~~~--~~---~~--~~-~~~~v~~iSAktg~gI------------------------------------- 219 (1527)
+....+..... .. .. +. ...++...||++|.|+
T Consensus 178 ~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~~~~~ 257 (842)
T 1n0u_A 178 FARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKW 257 (842)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETTTTEE
T ss_pred HHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCCCCeE
Confidence 11221111100 00 00 00 0124555677554221
Q ss_pred --------------------------------------------------------------------------hHHHHH
Q psy1758 220 --------------------------------------------------------------------------NKLLEN 225 (1527)
Q Consensus 220 --------------------------------------------------------------------------~eL~~~ 225 (1527)
+.|++.
T Consensus 258 ~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~LLd~ 337 (842)
T 1n0u_A 258 TNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEM 337 (842)
T ss_dssp ESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHHHHHH
T ss_pred EEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHHHHHH
Confidence 233333
Q ss_pred HHHHHH----H-------------------HhhcCCCCCCCceEEEEEeecCCCce-EEEEEeeccEEEeccEEEe-cce
Q psy1758 226 ISLQAE----I-------------------LELKAPVTTPAKGVIIESRLDKGKGP-VATVLIQSGTLRCSDIVVA-GAS 280 (1527)
Q Consensus 226 l~~~~~----~-------------------~~~~~~~~~p~~~~v~~~~~~~~~G~-v~~~~v~~G~l~~gd~vv~-g~~ 280 (1527)
++.... . .....+++.|+.++|++...++..|. +++++|++|+|+.|+.|.+ |+.
T Consensus 338 i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~~~ 417 (842)
T 1n0u_A 338 IVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPN 417 (842)
T ss_dssp HHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTT
T ss_pred HHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEecccc
Confidence 331100 0 00012456789999999999999996 9999999999999999953 321
Q ss_pred ----------eeeEeEeeccCC---ceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHHHHHHHhhhchHHHHHHHH
Q psy1758 281 ----------YGRIRSMLNENG---KNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAREIGLFRQGKFRDVKLSKQ 347 (1527)
Q Consensus 281 ----------~~kVr~i~~~~g---~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~~ 347 (1527)
..||.+++...| .++.++.+|+.+.|.|++..-...+.+. +.+..
T Consensus 418 ~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~---~~~~~------------------- 475 (842)
T 1n0u_A 418 YVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLT---TSETA------------------- 475 (842)
T ss_dssp CCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEE---SCTTC-------------------
T ss_pred ccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeec---CCCCc-------------------
Confidence 356666665544 5688999999999999988643223444 11100
Q ss_pred hhhhhhhHHHhhccccceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeE
Q psy1758 348 KLHKTENMFNDINKEKVKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQV 398 (1527)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~i 398 (1527)
..++. +.-.....+.+-|.+...+..+.+.++|.++..+...+.+
T Consensus 476 --~~l~~----~~~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v 520 (842)
T 1n0u_A 476 --HNMKV----MKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLT 520 (842)
T ss_dssp --CCBCC----CCCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEE
T ss_pred --ccccc----CCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEE
Confidence 00111 1101124567778888999999999999988655444554
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.1e-22 Score=239.97 Aligned_cols=253 Identities=20% Similarity=0.249 Sum_probs=168.2
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCe-EEEEEeCCCC
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT-RINIIDTPGH 995 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~-~iniiDTPGh 995 (1527)
.+....++|+|+|++|+|||||+++|+... ....+..+|+|++.....+.+.+. .++|||||||
T Consensus 29 ~~~~~~~kI~IvG~~~vGKSTLin~L~~~~---------------~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~ 93 (423)
T 3qq5_A 29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQN---------------VSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGL 93 (423)
T ss_dssp ---CCCEEEEEECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEETTTEEEEEEECSST
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHcCC---------------CCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCC
Confidence 345567899999999999999999998652 123456689999999999999876 9999999999
Q ss_pred CCchH-------HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh
Q psy1758 996 ADFGG-------EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 1068 (1527)
Q Consensus 996 ~df~~-------ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l 1068 (1527)
.+|.. .+..++..+|++|+|+|+ +..+++..++..+.+.++|+++|+||+|+..++..+..+++
T Consensus 94 ~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l------- 164 (423)
T 3qq5_A 94 DDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLY------- 164 (423)
T ss_dssp TCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHS-------
T ss_pred CcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHH-------
Confidence 99863 256678889999999999 78899999999999999999999999999877644222221
Q ss_pred cccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCC-------CCCCceeEEEeeeccccCce----
Q psy1758 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN-------SNNPLQLQIISLEYSSYLGK---- 1137 (1527)
Q Consensus 1069 ~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~-------~~~p~~~~V~~~~~d~~~G~---- 1137 (1527)
....++|++++||++|. |++++++.|.+.+|.+... ..+.+++++..++.....|+
T Consensus 165 ---~~~~g~~v~~vSAktg~----------gI~eL~~~L~~~l~~~~e~~l~~dLv~~gd~v~lv~pid~~~pkgr~ilp 231 (423)
T 3qq5_A 165 ---ESRYEAKVLLVSALQKK----------GFDDIGKTISEILPGDEEIPYLGDLIDGGDLVILVVPIDLGAPKGRLIMP 231 (423)
T ss_dssp ---SCCTTCCCCCCSSCCTT----------STTTHHHHHHHHSCCCCCCCSCSCCCCTTCCEEEECCCSCCSSTTCCCHH
T ss_pred ---HHHcCCCEEEEECCCCC----------CHHHHHHHHHHhhhhhccCcchhhccccCceEEEEeeccccCcCCccccc
Confidence 12345689999999998 9999999999999655211 13445666666555554444
Q ss_pred ----------------EEEEEeecCccccC-CEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeec------CCEEE-
Q psy1758 1138 ----------------IGIGRILSGRIKSL-QDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALS------GDIVL- 1193 (1527)
Q Consensus 1138 ----------------v~~grV~sG~lk~G-d~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~A------GdIva- 1193 (1527)
++..+...+.|+.. +...++-+ +. ....+|.. ..+...+..+... ||+..
T Consensus 232 ~~~~ird~l~~~~~~~~~~~~~l~~~l~~l~~~~~lv~t-ds-q~~~~v~~----~~p~~~~~t~~s~l~a~~kG~~~~~ 305 (423)
T 3qq5_A 232 QVHAIREALDREAIALVVKERELRYVMENIGMKPKLVIT-DS-QVAMKVAS----DVPEDVELTTFSIVESRYRGDLAYF 305 (423)
T ss_dssp HHHHHHHHHHTTCEEEECCSTTHHHHHHHCSSCCSCCCB-CT-THHHHHHH----TCCCSSSCCCBHHHHHHHSSCSHHH
T ss_pred hHHHHHHHHHhhhHHHHhhHHHHHHHHHhcCCCccEEEe-cc-HHHHHHhc----cCCCCCCcccHHHHhhccCCCHHHH
Confidence 23333334455443 22222212 11 11233433 2344445555444 99973
Q ss_pred Eec---ceecccCCeeeCCCCC
Q psy1758 1194 ITG---IEEICIGSTICDPSKP 1212 (1527)
Q Consensus 1194 i~g---l~~~~iGdTi~~~~~~ 1212 (1527)
++| +++++.|||+...+..
T Consensus 306 ~~g~~~~~~~~~gd~v~~~e~c 327 (423)
T 3qq5_A 306 VESVRKIEELEDGDTVVIMEGC 327 (423)
T ss_dssp HHHHHTTTTCCTTCEEEEECCS
T ss_pred HHHHHHHHhCCCCCEEEEeccC
Confidence 445 5577899999876654
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=7.8e-20 Score=203.45 Aligned_cols=154 Identities=19% Similarity=0.215 Sum_probs=112.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|||||||+++|....+...+.+++..++....+..++. ++.||||||+++|..++..+++.+|+++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 35689999999999999999999999998888888888877777777665 6789999999999999999999999999
Q ss_pred EEEeCCCCC----cHHHHHHHHHHHHcCCCEEEEEEcccCCcch---hHHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 145 LVVAADDGV----MPQTREAIAHAKISGVPLIVAINKIDKLDIN---LDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 145 lVvda~~g~----~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~---~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+|+|.++.. ...|...+......++|++||+||+|+.+.. .++. ..+. ..++ ++|+++||++|.
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~-~~~a------~~~~--~~~~e~SAktg~ 161 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEG-ERKA------KELN--VMFIETSAKAGY 161 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHH-HHHH------HHHT--CEEEEEBTTTTB
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHH-hhHH------HHhC--CeeEEEeCCCCc
Confidence 999999832 2334444444445678999999999996532 1111 1111 1222 579999999999
Q ss_pred ChhHHHHHHHHH
Q psy1758 218 GINKLLENISLQ 229 (1527)
Q Consensus 218 gI~eL~~~l~~~ 229 (1527)
||+++|+.|+..
T Consensus 162 nV~e~F~~i~~~ 173 (216)
T 4dkx_A 162 NVKQLFRRVAAA 173 (216)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999754
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-19 Score=220.31 Aligned_cols=161 Identities=20% Similarity=0.362 Sum_probs=124.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCCh----------hhHHHHHH-
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGH----------EAFTAMRA- 134 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~----------e~f~~~~~- 134 (1527)
...++|+++|++|||||||+|+|.+... ..+..+|+|++.....+.+++..+.||||||+ |.|..++.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 4568999999999999999999998876 47788999999988889999999999999998 88887765
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh---HHHHHHHhhhcccccccCCCCcEEEe
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL---DRIKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~---~~~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
.+++.+|++++|+|++++...|+.+++..+...++|+++|+||+|+.+... .+....+..... +...+|++++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~ 328 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ----FLDYAPILFM 328 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCG----GGTTSCEEEC
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcc----cCCCCCEEEE
Confidence 578999999999999999999999888888888999999999999976432 222222222111 1134699999
Q ss_pred eccCCCChhHHHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQAE 231 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~~~ 231 (1527)
||++|.|++++++.+.....
T Consensus 329 SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHH
Confidence 99999999999999976543
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.4e-19 Score=191.12 Aligned_cols=161 Identities=15% Similarity=0.169 Sum_probs=115.5
Q ss_pred cccCCCEEEEEecCCCChhHHHHHHHcccccc-ccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEE
Q psy1758 65 SLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVF-SEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 65 ~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~-~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~ 143 (1527)
.....++|+++|++|+|||||+++|.+..+.. .+.+++. .....+...+..+.||||||++.|..++..+++.+|++
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--YNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS--EEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc--eeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 34566799999999999999999999988766 5555444 33344567888999999999999999999999999999
Q ss_pred EEEEeCCCCCcHH-HHHHHHHHHHc-----------CCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEE
Q psy1758 144 VLVVAADDGVMPQ-TREAIAHAKIS-----------GVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 144 IlVvda~~g~~~q-t~e~i~~~~~~-----------~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
|+|+|+++....+ ..+.+..+... ++|+++|+||+|+..... .+....+.... ... ...+++++
T Consensus 91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~ 167 (199)
T 4bas_A 91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTT-LMG--DHPFVIFA 167 (199)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHH-HHT--TSCEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchh-hcc--CCeeEEEE
Confidence 9999999864322 22333333322 899999999999976422 22222221111 001 12368999
Q ss_pred eeccCCCChhHHHHHHHHHH
Q psy1758 211 ISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 211 iSAktg~gI~eL~~~l~~~~ 230 (1527)
+||++|.||+++|++|....
T Consensus 168 ~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 168 SNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp CBTTTTBTHHHHHHHHHHHH
T ss_pred eeCCCccCHHHHHHHHHHHH
Confidence 99999999999999998654
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-18 Score=180.25 Aligned_cols=149 Identities=23% Similarity=0.314 Sum_probs=113.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccccc-cccCCceeEEEEEEEEEeCCeEEEEEeCCChhh-------HHHHHHhhccccC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA-------FTAMRARGAKVTD 141 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~-------f~~~~~~~~~~aD 141 (1527)
++|+++|++|+|||||+++|.+..+. ....+++|.+.....+..++..+.+|||||++. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 57999999999999999999988753 566678888888888888899999999999887 5667778889999
Q ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 142 IVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 142 ~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
++++|+|++++...........+...+.|+++|+||+|+.+... ... . .. .++ ..+++++||++|.|+++
T Consensus 82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-----~~~--~-~~-~~~-~~~~~~~Sa~~~~gv~~ 151 (161)
T 2dyk_A 82 VVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL-----YLG--P-LY-GLG-FGDPIPTSSEHARGLEE 151 (161)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG-----GCG--G-GG-GGS-SCSCEECBTTTTBSHHH
T ss_pred EEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH-----hHH--H-HH-hCC-CCCeEEEecccCCChHH
Confidence 99999999998776666666666678899999999999976310 000 1 11 222 23799999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
++++|..
T Consensus 152 l~~~l~~ 158 (161)
T 2dyk_A 152 LLEAIWE 158 (161)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999864
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-19 Score=210.00 Aligned_cols=246 Identities=16% Similarity=0.233 Sum_probs=168.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChh-hHH--------HHHHhh
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE-AFT--------AMRARG 136 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e-~f~--------~~~~~~ 136 (1527)
.+..+|+|+|++|+|||||+|+|.+..+ ..+..+++|++.....+.+++.+++||||||+. .+. .....+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 3556899999999999999999999876 456667788776666677888899999999987 322 223466
Q ss_pred ccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 137 AKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 137 ~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
++.+|++++|+|+++ +..++...+..+...+.|+++++||+|+... .......+... ...+ +..+++++||++|
T Consensus 86 l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~-~~~~~~~l~~l---~~~~-~~~~~i~iSA~~g 159 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQE-KADLLPHLQFL---ASQM-NFLDIVPISAETG 159 (301)
T ss_dssp CCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCC-HHHHHHHHHHH---HTTS-CCSEEEECCTTTT
T ss_pred HhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCcc-HHHHHHHHHHH---HHhc-CcCceEEEECCCC
Confidence 789999999999988 8888888887777778999999999999761 11121211111 1111 2237999999999
Q ss_pred CChhHHHHHHHHHHHHHhhcCC----CCCC-----------------------CceEEEEEeecCCCceEEEEEeeccEE
Q psy1758 217 VGINKLLENISLQAEILELKAP----VTTP-----------------------AKGVIIESRLDKGKGPVATVLIQSGTL 269 (1527)
Q Consensus 217 ~gI~eL~~~l~~~~~~~~~~~~----~~~p-----------------------~~~~v~~~~~~~~~G~v~~~~v~~G~l 269 (1527)
.|+++|++.+.......+...+ .+.| ..+++++.+.++.. |++
T Consensus 160 ~~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~~~~~~~~----------~~~ 229 (301)
T 1ega_A 160 LNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNER----------GGY 229 (301)
T ss_dssp TTHHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEECCSS----------CSE
T ss_pred CCHHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEEEEecCC----------CeE
Confidence 9999999998742110000000 0111 12344444443333 444
Q ss_pred EeccEEEecceeeeEeEeeccCCceeeecCCCcceEecCCCCCCCCCCeEEEeCChhHHH
Q psy1758 270 RCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEIQGLTKVPFSGEELFVILNEKKAR 329 (1527)
Q Consensus 270 ~~gd~vv~g~~~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~~~G~~~~~~~~e~~a~ 329 (1527)
+....+.+-...-| .-+.+..|..++++++..+..|.++-..+..++.+..+....+.+
T Consensus 230 ~i~~~i~v~~~~~k-~i~ig~~G~~~k~ig~~ar~~i~~~~~~~v~l~l~vkv~~~w~~~ 288 (301)
T 1ega_A 230 DINGLILVEREGQK-KMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWADD 288 (301)
T ss_dssp EEEEEEEESSHHHH-HHHHCGGGHHHHHHHHHHHHHHHHHTTSCEEEEEEEEETTCCCHH
T ss_pred EEEEEEEEEECCce-EEEECCCcHHHHHHHHHHHHHHHHHHCCCeEEEEEEEECCCcccC
Confidence 54444444221111 334567888899999999999999988888999988888765443
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-18 Score=185.51 Aligned_cols=156 Identities=15% Similarity=0.089 Sum_probs=119.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+.++|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 3457899999999999999999999888777777888777777777777 47899999999999999999999999999
Q ss_pred EEEeCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 145 LVVAADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 145 lVvda~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|+|+++.... .|...+......++|+++|+||+|+....... ....+. ..+ .++++++||++|.|
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~~~Sa~~~~g 159 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFA------QEN--ELMFLETSALTGEN 159 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHH------HHT--TCEEEECCTTTCTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHH------HHc--CCEEEEecCCCCCC
Confidence 99999984332 23333333334678999999999996422111 111111 111 25899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
++++|+.+....
T Consensus 160 i~~l~~~l~~~~ 171 (186)
T 2bme_A 160 VEEAFVQCARKI 171 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998554
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-18 Score=185.63 Aligned_cols=157 Identities=18% Similarity=0.179 Sum_probs=116.3
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
..+..+|+++|++|+|||||+++|.+..+.....+++..+. ..+...+..+.||||||++.|..++..+++.+|++++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeE--EEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 34567999999999999999999998887655555554444 3466778899999999999999999999999999999
Q ss_pred EEeCCCCCcHH-HHHHHHHHH----HcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQ-TREAIAHAK----ISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~q-t~e~i~~~~----~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+ ..+.+..+. ..++|+++|+||+|+.... ..+....+.... .....++++++||++|.|+
T Consensus 97 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~SA~~g~gv 172 (188)
T 1zd9_A 97 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSA----IQDREICCYSISCKEKDNI 172 (188)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGG----CCSSCEEEEECCTTTCTTH
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhh----hccCCeeEEEEECCCCCCH
Confidence 99999843322 223333332 2578999999999997642 222222221111 1113458999999999999
Q ss_pred hHHHHHHHH
Q psy1758 220 NKLLENISL 228 (1527)
Q Consensus 220 ~eL~~~l~~ 228 (1527)
++++++|..
T Consensus 173 ~~l~~~l~~ 181 (188)
T 1zd9_A 173 DITLQWLIQ 181 (188)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999964
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=201.55 Aligned_cols=154 Identities=19% Similarity=0.176 Sum_probs=123.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc-cccCCceeEEEEEEEEEeCCeEEEEEeCCChhh--------HHHHHHhhc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA--------FTAMRARGA 137 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~--------f~~~~~~~~ 137 (1527)
.+..+|+++|++|+|||||+|+|.+..+. .+..+++|++.....+..++.+++||||||+.+ |......++
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 35568999999999999999999998874 567778888776666778888999999999765 677788899
Q ss_pred cccCEEEEEEeCCCCCcHHHHHHHHHHHHc--CCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 138 KVTDIVVLVVAADDGVMPQTREAIAHAKIS--GVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 138 ~~aD~~IlVvda~~g~~~qt~e~i~~~~~~--~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
+.+|++++|+|++++....+...+..+... ++|+++|+||+|+...... ....+... ....+++++||++
T Consensus 85 ~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~-------~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE-AMKAYHEL-------LPEAEPRMLSALD 156 (301)
T ss_dssp SSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH-HHHHHHHT-------STTSEEEECCTTC
T ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH-HHHHHHHh-------cCcCcEEEEeCCC
Confidence 999999999999998887777777777766 8999999999999764321 11111111 2335799999999
Q ss_pred CCChhHHHHHHHH
Q psy1758 216 GVGINKLLENISL 228 (1527)
Q Consensus 216 g~gI~eL~~~l~~ 228 (1527)
|.|+++|++.|..
T Consensus 157 g~gv~~l~~~l~~ 169 (301)
T 1wf3_A 157 ERQVAELKADLLA 169 (301)
T ss_dssp HHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999863
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-18 Score=188.41 Aligned_cols=156 Identities=17% Similarity=0.174 Sum_probs=119.8
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+.++|+++|++|+|||||+++|.+..+.....++++.+.....+.+++. .+.||||||++.|..++..+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 34578999999999999999999998887777778888887777777774 7889999999999999999999999999
Q ss_pred EEEeCCCCCc----HHHHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 145 LVVAADDGVM----PQTREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 145 lVvda~~g~~----~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|+|+++... ..|...+......++|+++|+||+|+.+... ......+.. .. .++++++||++|.|
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~~~Sa~~g~g 175 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE------AQ--DMYYLETSAKESDN 175 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHH------HH--TCCEEECCTTTCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH------Hc--CCEEEEEeCCCCCC
Confidence 9999998432 2233333333334789999999999964211 111111111 11 25899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
|+++|+.|....
T Consensus 176 v~~l~~~l~~~i 187 (201)
T 2ew1_A 176 VEKLFLDLACRL 187 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997544
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=186.85 Aligned_cols=155 Identities=16% Similarity=0.177 Sum_probs=121.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
..++|+++|++|+|||||+++|.+..+.....++++.+.....+..++. .+.||||||++.|..++..+++.+|++++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 94 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 94 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEE
Confidence 4578999999999999999999999888888888888888888888774 78999999999999999999999999999
Q ss_pred EEeCCCCCc----HHHHHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVM----PQTREAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~----~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++... .+|...+......++|+++|+||+|+.+.... .....+.. .+ .++++++||++|.|+
T Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~g~gv 166 (196)
T 3tkl_A 95 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD------SL--GIPFLETSAKNATNV 166 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH------HT--TCCEEEECTTTCTTH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHH------Hc--CCcEEEEeCCCCCCH
Confidence 999998432 22333333333347899999999999753211 11111111 11 258999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
+++|++|....
T Consensus 167 ~~l~~~l~~~i 177 (196)
T 3tkl_A 167 EQSFMTMAAEI 177 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998654
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.5e-18 Score=180.15 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=115.7
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+.++|+++|++|+|||||+++|.+..+.....++++.+.....+..++. .+.||||||++.|..++..+++.+|++++
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 85 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 85 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEE
Confidence 4478999999999999999999998887777777777777777777774 78999999999999999999999999999
Q ss_pred EEeCCCCCcH----HHHHHHHHHHH----cCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 146 VVAADDGVMP----QTREAIAHAKI----SGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 146 Vvda~~g~~~----qt~e~i~~~~~----~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
|+|+++.... .|.+.+..... .++|+++|+||+|+..... .+....+... ....+++++||++|
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~ 158 (177)
T 1wms_A 86 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD-------NGDYPYFETSAKDA 158 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH-------TTCCCEEECCTTTC
T ss_pred EEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh-------cCCceEEEEeCCCC
Confidence 9999984332 23333333222 5789999999999963221 1111112110 12358999999999
Q ss_pred CChhHHHHHHHHH
Q psy1758 217 VGINKLLENISLQ 229 (1527)
Q Consensus 217 ~gI~eL~~~l~~~ 229 (1527)
.|++++++.|...
T Consensus 159 ~gi~~l~~~l~~~ 171 (177)
T 1wms_A 159 TNVAAAFEEAVRR 171 (177)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999754
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-18 Score=181.22 Aligned_cols=157 Identities=19% Similarity=0.157 Sum_probs=115.3
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
..+.++|+++|++|+|||||+++|....+.. ..+++ ......+.+++..+.+|||||++.|..++..+++.+|++++
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~--~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTI--GFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCS--SEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcC--ccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 3466899999999999999999998877642 33333 33345566778899999999999999999999999999999
Q ss_pred EEeCCCCCcHH-HHHHHHHHHH----cCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQ-TREAIAHAKI----SGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~q-t~e~i~~~~~----~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++..... ....+..+.. .++|+++|+||+|+.+.. ..+....+..... . ...++++++||++|.|+
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~Sa~~~~gi 156 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPAL--K--DRKWQIFKTSATKGTGL 156 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGC--T--TSCEEEEECCTTTCTTH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhc--c--CCceEEEECcCCCCcCH
Confidence 99999864322 2333333322 578999999999997642 2223222221111 1 12358999999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
++++++|...
T Consensus 157 ~~l~~~l~~~ 166 (171)
T 1upt_A 157 DEAMEWLVET 166 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999754
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=7.5e-18 Score=177.81 Aligned_cols=153 Identities=20% Similarity=0.173 Sum_probs=111.4
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAA 149 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda 149 (1527)
.+|+++|++|+|||||+++|.+..+.. ..+++. .....+...+..+.+|||||++.|..++..+++.+|++++|+|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~ 77 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 379999999999999999998877643 334333 34455667788999999999999999999999999999999999
Q ss_pred CCCCcHH-HHHHHHHHHH----cCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHH
Q psy1758 150 DDGVMPQ-TREAIAHAKI----SGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223 (1527)
Q Consensus 150 ~~g~~~q-t~e~i~~~~~----~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~ 223 (1527)
++....+ ..+.+..+.. .+.|+++|+||+|+.+... .+....+..... ....++++++||++|.|+++++
T Consensus 78 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 78 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL----RHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC----SSCCEEEEECBTTTTBTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccc----cCccEEEEEcccCCCcCHHHHH
Confidence 9853222 2233333322 3789999999999976422 222222211111 1123589999999999999999
Q ss_pred HHHHHH
Q psy1758 224 ENISLQ 229 (1527)
Q Consensus 224 ~~l~~~ 229 (1527)
++|...
T Consensus 154 ~~l~~~ 159 (164)
T 1r8s_A 154 DWLSNQ 159 (164)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999753
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=214.66 Aligned_cols=161 Identities=20% Similarity=0.358 Sum_probs=128.0
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccc-cccccCCceeEEEEEEEEEeCCeEEEEEeCCC----------hhhHHHHHH
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTN-VVFSEAGGITQHIGAYNVVTNHGSITFLDTPG----------HEAFTAMRA 134 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~-~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG----------~e~f~~~~~ 134 (1527)
....++|+++|++|+|||||+++|.+.. ...+..+|+|.+.....+.+++.+++|||||| ++.|..++.
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 4567899999999999999999999775 56788889999988888889999999999999 799988876
Q ss_pred h-hccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh---HHHHHHHhhhcccccccCCCCcEEE
Q psy1758 135 R-GAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL---DRIKQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 135 ~-~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~---~~~~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
. +++.+|++++|+|++++...++..++..+...++|+|+|+||+|+.+.+. ++....+.... .....+|+++
T Consensus 272 ~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 347 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHF----QFLDYAPILF 347 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHC----GGGTTSCEEE
T ss_pred HHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhc----ccCCCCCEEE
Confidence 4 77999999999999999999999999999889999999999999976432 22222222211 1123469999
Q ss_pred eeccCCCChhHHHHHHHHHH
Q psy1758 211 ISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 211 iSAktg~gI~eL~~~l~~~~ 230 (1527)
+||++|.||+++|+.+....
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHH
Confidence 99999999999999998654
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=206.61 Aligned_cols=215 Identities=16% Similarity=0.084 Sum_probs=132.1
Q ss_pred HHHHHHhCCCccCccccCCHHHHHHHHHhcCCceee----cCCCCchhhhhhhcccCcccccccCCCEEEEEecCCCChh
Q psy1758 8 VIKNLMKLGQMVTINQVLDQETAMILVEEMGHVAHA----SKLNDPESFLLNEYNKNITAESLVRAPIVTIMGHVDHGKT 83 (1527)
Q Consensus 8 ~i~~l~~~g~~~~~~~~l~~~~~~~~a~~~g~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~r~~~V~IvG~~~~GKT 83 (1527)
..+.++..+.....++.++.+.....++.+...... ........................+.++|+++|++|+|||
T Consensus 100 ~~n~~~e~~~~~~~~~~i~~~y~s~~A~lYr~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKS 179 (329)
T 3o47_A 100 KFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSLESSPAQNWTPPQPRGLFGKKEMRILMVGLDAAGKT 179 (329)
T ss_dssp HHHHHHHTCSSCCTTCCHHHHHHSHHHHHHHHHHHHHHTTCCCCSCC-----CCCCC------CCSEEEEEEESTTSSHH
T ss_pred HHHHHHHhcCCCCCCCCccccccchHHHHHhhhccccccCCccccccccccccCCCCcccccccCcceEEEECCCCccHH
Confidence 445555555556666777776666666554422110 0000000000000011111122345679999999999999
Q ss_pred HHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHH-HHHHH
Q psy1758 84 SLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQT-REAIA 162 (1527)
Q Consensus 84 SLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt-~e~i~ 162 (1527)
||+++|.+..+.... + |++.....+...+..+.||||||++.|..++..+++.+|++|+|+|+++....+. .+.+.
T Consensus 180 sLl~~l~~~~~~~~~-p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~ 256 (329)
T 3o47_A 180 TILYKLKLGEIVTTI-P--TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELM 256 (329)
T ss_dssp HHHHHTCSSCCEEEE-E--ETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcc-c--ccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHH
Confidence 999999988764332 3 4445556677888899999999999999999999999999999999987543322 22222
Q ss_pred HH-H---HcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 163 HA-K---ISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 163 ~~-~---~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
.+ . ..++|+++|+||+|+.+.. ..++...+..... ....++++++||++|.||++||+.|...
T Consensus 257 ~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~----~~~~~~~~~vSAk~g~gi~el~~~l~~~ 324 (329)
T 3o47_A 257 RMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL----RHRNWYIQATCATSGDGLYEGLDWLSNQ 324 (329)
T ss_dssp HHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTC----CSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhh----hcCCCEEEEEECCCCcCHHHHHHHHHHH
Confidence 22 2 2378999999999997643 2233332221111 1234689999999999999999999754
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-18 Score=187.01 Aligned_cols=156 Identities=16% Similarity=0.156 Sum_probs=112.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+.++|+++|++|+|||||+++|.+..+.....++++.+.....+.+++. .+.||||||++.|..++..+++.+|++|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 34578999999999999999999988876666677777777777777764 7899999999999999999999999999
Q ss_pred EEEeCCCCCcHHH----HHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 145 LVVAADDGVMPQT----REAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 145 lVvda~~g~~~qt----~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|+|+++....+. .+.+......++|+++|+||+|+.+... ......+.. .+ ...+++++||++|.|
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~------~~-~~~~~~~~SA~~g~g 176 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQ------QI-TGMRFCEASAKDNFN 176 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------TS-TTCEEEECBTTTTBS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHH------hc-CCCeEEEEeCCCCCC
Confidence 9999998543332 2333333334789999999999965321 111111111 11 235899999999999
Q ss_pred hhHHHHHHHHH
Q psy1758 219 INKLLENISLQ 229 (1527)
Q Consensus 219 I~eL~~~l~~~ 229 (1527)
++++++.|...
T Consensus 177 i~~l~~~l~~~ 187 (192)
T 2il1_A 177 VDEIFLKLVDD 187 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999754
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.8e-18 Score=181.54 Aligned_cols=156 Identities=20% Similarity=0.217 Sum_probs=109.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc-cccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~ 143 (1527)
.+..+|+++|++|+|||||+++|.+..+. ....++++.+.....+..++. .+.+|||||++.|..++..+++.+|++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 87 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 87 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence 35578999999999999999999988874 455677777777666666765 789999999999999999999999999
Q ss_pred EEEEeCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 144 VLVVAADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 144 IlVvda~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
++|+|+++.... .|.+.+......++|+++|+||+|+.+... ......+.. .+ .++++++||++|.
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~ 159 (180)
T 2g6b_A 88 LLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAK------EY--GLPFMETSAKTGL 159 (180)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHH------HH--TCCEEECCTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHH------Hc--CCeEEEEeCCCCC
Confidence 999999984332 222222222235789999999999975321 111111111 11 2489999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
|+++++++|....
T Consensus 160 gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 160 NVDLAFTAIAKEL 172 (180)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999997543
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-18 Score=184.49 Aligned_cols=150 Identities=21% Similarity=0.249 Sum_probs=109.2
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH------HHHHhhcc--cc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT------AMRARGAK--VT 140 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~------~~~~~~~~--~a 140 (1527)
.++|+++|++|+|||||+++|.+..+..+..+++|.+.....+.+++..+.+|||||++.|. .+...+++ .+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 46899999999999999999998877677778888877777777888899999999988773 34445554 79
Q ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 141 D~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|++++|+|+++ ......++..+...++|+++|+||+|+...... .....+. ..++ ++++++||++|.|+
T Consensus 83 ~~~i~v~D~~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~------~~~~--~~~~~~SA~~~~~v 152 (165)
T 2wji_A 83 DLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLE------KILG--VKVVPLSAAKKMGI 152 (165)
T ss_dssp SEEEEEEETTC--HHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHH------HHHT--SCEEECBGGGTBSH
T ss_pred CEEEEEecCCc--hhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHH------HHhC--CCEEEEEcCCCCCH
Confidence 99999999987 233334455555678999999999998542110 0011111 1122 58999999999999
Q ss_pred hHHHHHHHH
Q psy1758 220 NKLLENISL 228 (1527)
Q Consensus 220 ~eL~~~l~~ 228 (1527)
+++|+.|..
T Consensus 153 ~~l~~~l~~ 161 (165)
T 2wji_A 153 EELKKAISI 161 (165)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999864
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.1e-18 Score=198.66 Aligned_cols=157 Identities=25% Similarity=0.384 Sum_probs=127.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc-cccCCceeEEEEEEEEEeC-CeEEEEEeCCCh----------hhHHHHHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTN-HGSITFLDTPGH----------EAFTAMRA 134 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~-~~~i~~iDTPG~----------e~f~~~~~ 134 (1527)
+.+..|+++|++|+|||||+|+|.+..+. .+..+++|++.....+..+ +.+++||||||+ +.|.....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 45568999999999999999999998874 6778889998888888888 889999999997 34557777
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHH-HHHHHHcCCCEEEEEEcccCC-cch-hHHHHHHHhhhcccccccCCCCcEEEe
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREA-IAHAKISGVPLIVAINKIDKL-DIN-LDRIKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~-i~~~~~~~vpiIvviNKiDl~-~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
.++..+|++++|+|++++...++... +..+...++|+++|+||+|+. +.. .......+.. .++...+++++
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~------~~~~~~~i~~v 161 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHK------KHPELTEIVPI 161 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHH------HCTTCCCEEEC
T ss_pred HHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHH------hccCCCeEEEE
Confidence 88999999999999999988888887 677777899999999999997 322 2222222222 12234689999
Q ss_pred eccCCCChhHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~ 229 (1527)
||++|.|+++|++.|...
T Consensus 162 SA~~g~gv~~L~~~l~~~ 179 (308)
T 3iev_A 162 SALKGANLDELVKTILKY 179 (308)
T ss_dssp BTTTTBSHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHh
Confidence 999999999999999754
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-18 Score=190.74 Aligned_cols=163 Identities=18% Similarity=0.220 Sum_probs=124.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc--ccccCCceeEEEEEEEEE-eCCeEEEEEeCCC----------hhhHHHHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV--VFSEAGGITQHIGAYNVV-TNHGSITFLDTPG----------HEAFTAMR 133 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~--~~~~~~giT~~~~~~~~~-~~~~~i~~iDTPG----------~e~f~~~~ 133 (1527)
.+.++|+++|++|+|||||+++|.+... ..+..+++|.+.....+. .++..+.|||||| ++.|..+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 3568999999999999999999998862 566777888887777665 5567899999999 56666666
Q ss_pred Hhhccc---cCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhH-HHHHHHhhhccccc--ccCCCCc
Q psy1758 134 ARGAKV---TDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPE--EYGGASP 207 (1527)
Q Consensus 134 ~~~~~~---aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~--~~~~~~~ 207 (1527)
..+++. +|++++|+|++++.......++..+...++|+++|+||+|+...... .....+........ ......+
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 186 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLT 186 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEE
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCe
Confidence 665544 88999999999988888888888888889999999999999764321 11221111110000 0124568
Q ss_pred EEEeeccCCCChhHHHHHHHHH
Q psy1758 208 FISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 208 v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
++++||++|.|+++|++.|...
T Consensus 187 ~~~~SA~~g~gv~~l~~~l~~~ 208 (223)
T 4dhe_A 187 VQLFSALKRTGLDDAHALIESW 208 (223)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHH
T ss_pred EEEeecCCCcCHHHHHHHHHHh
Confidence 9999999999999999999754
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.6e-18 Score=186.25 Aligned_cols=156 Identities=15% Similarity=0.156 Sum_probs=110.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+.....++++.+.....+.+++. .+.||||||+++|..++..+++.+|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 45578999999999999999999998876666666666776677777764 8899999999999999999999999999
Q ss_pred EEEeCCCCCcHHH-HHHHHHHH---HcCCCEEEEEEcccCCcch---hHHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 145 LVVAADDGVMPQT-REAIAHAK---ISGVPLIVAINKIDKLDIN---LDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 145 lVvda~~g~~~qt-~e~i~~~~---~~~vpiIvviNKiDl~~~~---~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+|+|+++....+. ..++..+. ..++|+++|+||+|+.+.. .++. ..+.. .+ +..+++++||++|.
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~-~~~~~------~~-~~~~~~~~SA~~g~ 178 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEA-QSLAE------HY-DILCAIETSAKDSS 178 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHH-HHHHH------HT-TCSEEEECBTTTTB
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHH-HHHHH------Hc-CCCEEEEEeCCCCC
Confidence 9999997432211 12222222 2568999999999996521 1111 11111 11 11289999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
||+++|++|....
T Consensus 179 gi~~l~~~l~~~i 191 (201)
T 2hup_A 179 NVEEAFLRVATEL 191 (201)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999997654
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-18 Score=181.78 Aligned_cols=154 Identities=18% Similarity=0.119 Sum_probs=109.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+..++. .+.||||||++.|..++..+++.+|++++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 84 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEE
Confidence 4478999999999999999999998877666777777776666666654 68899999999999999999999999999
Q ss_pred EEeCCCCCcHH----HHHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQ----TREAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~q----t~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+ |.+.+......++|+++|+||+|+.+.... +....+.. .+ .++++++||++|.|+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~gi 156 (170)
T 1z08_A 85 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAE------SV--GAKHYHTSAKQNKGI 156 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHH------HT--TCEEEEEBTTTTBSH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHH------Hc--CCeEEEecCCCCCCH
Confidence 99999843222 222233333357899999999999653211 11111111 11 258999999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
++++++|...
T Consensus 157 ~~l~~~l~~~ 166 (170)
T 1z08_A 157 EELFLDLCKR 166 (170)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999754
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-18 Score=185.00 Aligned_cols=157 Identities=23% Similarity=0.222 Sum_probs=110.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+..+|+++|++|+|||||+++|.+..+. ...+++ ......+.+++..+.+|||||+++|..++..+++.+|++++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTI--GSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCS--CSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCC--ccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 45689999999999999999999987765 333322 233445566788999999999999999988999999999999
Q ss_pred EeCCCCCcHH-HHHHHHHHH----HcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQ-TREAIAHAK----ISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~q-t~e~i~~~~----~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++....+ ....+..+. ..+.|+++|+||+|+.+.. ..+....+..... . ...++++++||++|.|++
T Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~--~--~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 91 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI--K--DHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGC--C--SSCEEEEECBTTTTBTHH
T ss_pred EeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhh--c--CCCcEEEEccCCCCcCHH
Confidence 9999864322 233333333 2578999999999997632 2222222221101 1 123589999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
+++++|....
T Consensus 167 ~l~~~l~~~~ 176 (187)
T 1zj6_A 167 QGLEWMMSRL 176 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999997653
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-18 Score=191.37 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=105.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+.++|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|..++..+++.+|++|
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 105 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL 105 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence 4568999999999999999999998887555555555555555555555 46899999999999999999999999999
Q ss_pred EEEeCCCCCcHH----HHHHHHHHHHcCCCEEEEEEcccCCcchhH----HHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 145 LVVAADDGVMPQ----TREAIAHAKISGVPLIVAINKIDKLDINLD----RIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 145 lVvda~~g~~~q----t~e~i~~~~~~~vpiIvviNKiDl~~~~~~----~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
+|+|+++....+ |.+.+......++|+++|+||+|+.+.... .+....... ....+ .++++++||++|
T Consensus 106 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~--~~~~~--~~~~~~~SA~~g 181 (199)
T 2p5s_A 106 LLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEK--LAMTY--GALFCETSAKDG 181 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHH--HHHHH--TCEEEECCTTTC
T ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHH--HHHHc--CCeEEEeeCCCC
Confidence 999999844322 222333333347899999999998632110 000000000 01112 258999999999
Q ss_pred CChhHHHHHHHHH
Q psy1758 217 VGINKLLENISLQ 229 (1527)
Q Consensus 217 ~gI~eL~~~l~~~ 229 (1527)
.||+++++.|...
T Consensus 182 ~gv~el~~~l~~~ 194 (199)
T 2p5s_A 182 SNIVEAVLHLARE 194 (199)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999754
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-18 Score=184.12 Aligned_cols=154 Identities=16% Similarity=0.082 Sum_probs=113.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC---eEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH---GSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~---~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+.+++ ..+.+|||||++.|..++..+++.+|+++
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 84 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVL 84 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEE
Confidence 457899999999999999999998887655555555566666667765 58999999999999999999999999999
Q ss_pred EEEeCCCCCcH----HHHHHHHHHHH--cCCC-EEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 145 LVVAADDGVMP----QTREAIAHAKI--SGVP-LIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 145 lVvda~~g~~~----qt~e~i~~~~~--~~vp-iIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
+|+|+++.... .|...+..... .+.| +++|+||+|+.+... .+....+.. .+ .++++++||++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~ 156 (178)
T 2hxs_A 85 LVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ------EN--GFSSHFVSAKT 156 (178)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH------HH--TCEEEEECTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH------Hc--CCcEEEEeCCC
Confidence 99999984332 22222222111 2566 899999999965211 111111111 11 25899999999
Q ss_pred CCChhHHHHHHHHH
Q psy1758 216 GVGINKLLENISLQ 229 (1527)
Q Consensus 216 g~gI~eL~~~l~~~ 229 (1527)
|.|++++|++|...
T Consensus 157 ~~gi~~l~~~l~~~ 170 (178)
T 2hxs_A 157 GDSVFLCFQKVAAE 170 (178)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999754
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-18 Score=183.49 Aligned_cols=155 Identities=19% Similarity=0.140 Sum_probs=117.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+.++|+++|++|+|||||+++|.+..+.....++++.+.....+.+++ ..+.||||||++.|..++..+++.+|++++
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 87 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIV 87 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEE
Confidence 457899999999999999999999888877888888888888888887 578999999999999999999999999999
Q ss_pred EEeCCCCCcHHHHH-HHHHHHH--cCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 146 VVAADDGVMPQTRE-AIAHAKI--SGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 146 Vvda~~g~~~qt~e-~i~~~~~--~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|+|+++....+... ++..+.. .++|+++|+||+|+.+..... ....+.. .+ .++++++||++|.|++
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~gi~ 159 (181)
T 3tw8_B 88 VYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAG------QM--GIQLFETSAKENVNVE 159 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH------HH--TCCEEECBTTTTBSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHH------Hc--CCeEEEEECCCCCCHH
Confidence 99999843332222 2222222 358999999999987532111 1111111 11 2489999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
+++++|....
T Consensus 160 ~l~~~l~~~~ 169 (181)
T 3tw8_B 160 EMFNCITELV 169 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998654
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=180.81 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=114.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+..+|+++|++|+|||||+++|.+.. .....+++. .....+.+++..+.+|||||++.|...+..+++.+|++++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 92 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 456899999999999999999999877 434444333 33445666788999999999999999999999999999999
Q ss_pred EeCCCCCcHHH-HHHHHHHH----HcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQT-REAIAHAK----ISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~qt-~e~i~~~~----~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++....+. .+.+..+. ..++|+++|+||+|+.+... .+....+.... .....++++++||++|.|++
T Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 93 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDS----IRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG----CCSSCEEEEECCTTTCTTHH
T ss_pred EECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhh----ccCCceEEEEeeCCCCCCHH
Confidence 99998543222 23333332 24789999999999976422 22222221110 01124589999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
+++++|....
T Consensus 169 ~l~~~l~~~i 178 (186)
T 1ksh_A 169 PGIDWLLDDI 178 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999997543
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-18 Score=185.22 Aligned_cols=155 Identities=17% Similarity=0.158 Sum_probs=89.9
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+.+++ ..+.||||||++.|..++..+++.+|++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 86 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence 357899999999999999999998887766777888888777777777 578999999999999999999999999999
Q ss_pred EEeCCCCCcHHH-HHHHHHHHH---cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQT-REAIAHAKI---SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt-~e~i~~~~~---~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+. ..++..+.. .++|+++|+||+|+.+... ......+.. .+ .++++++||++|.|+
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~~~Sa~~~~~i 158 (183)
T 2fu5_C 87 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLAL------DY--GIKFMETSAKANINV 158 (183)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHH------HH--TCEEEECCC---CCH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHH------Hc--CCeEEEEeCCCCCCH
Confidence 999998432222 222333332 4789999999999975321 111111111 12 258999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
+++|+.|....
T Consensus 159 ~~l~~~l~~~i 169 (183)
T 2fu5_C 159 ENAFFTLARDI 169 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999997554
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-18 Score=181.20 Aligned_cols=154 Identities=17% Similarity=0.127 Sum_probs=113.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+.++|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|...+..+++.+|++++
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEE
Confidence 457899999999999999999999887655555555555455555555 478999999999999999999999999999
Q ss_pred EEeCCCCCcHH----HHHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQ----TREAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~q----t~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+ |...+......+.|+++|+||+|+.+.... +....+.. .+ .++++++||++|.|+
T Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 94 VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAE------EN--GLLFLEASAKTGENV 165 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HT--TCEEEECCTTTCTTH
T ss_pred EEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHH------Hc--CCEEEEEeCCCCCCH
Confidence 99999853322 222233333357899999999999642211 11111111 11 258999999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
+++|++|...
T Consensus 166 ~~l~~~l~~~ 175 (179)
T 1z0f_A 166 EDAFLEAAKK 175 (179)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999754
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-18 Score=197.42 Aligned_cols=148 Identities=21% Similarity=0.250 Sum_probs=119.5
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH----------HHHhhc--
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA----------MRARGA-- 137 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~----------~~~~~~-- 137 (1527)
++|+++|++|+|||||+|+|++.....+..+|+|.+.....+.+++..+.||||||+..|.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 58999999999999999999999888889999999999999999999999999999877753 444555
Q ss_pred cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 138 KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 138 ~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
..+|++|+|+|+++ .........++...++|+++|+||+|+...... .....+.. .+ .+|++++||++|
T Consensus 82 ~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~------~l--g~~vi~~SA~~g 151 (256)
T 3iby_A 82 LEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLES------LL--GCSVIPIQAHKN 151 (256)
T ss_dssp SCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHH------HH--CSCEEECBGGGT
T ss_pred CCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHH------Hc--CCCEEEEECCCC
Confidence 78999999999998 445556667777789999999999998642211 11111111 12 259999999999
Q ss_pred CChhHHHHHHH
Q psy1758 217 VGINKLLENIS 227 (1527)
Q Consensus 217 ~gI~eL~~~l~ 227 (1527)
.|+++|++.|.
T Consensus 152 ~gi~el~~~i~ 162 (256)
T 3iby_A 152 IGIPALQQSLL 162 (256)
T ss_dssp BSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999999995
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-18 Score=181.78 Aligned_cols=153 Identities=19% Similarity=0.206 Sum_probs=117.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+..++. .+.||||||++.|..++..+++.+|++++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4478999999999999999999988887777788888887777777774 78999999999999999999999999999
Q ss_pred EEeCCCCCc----HHHHHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVM----PQTREAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~----~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++... ..|...+......++|+++|+||+|+.+.... ........ .+ .++++++||++|.|+
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~~i 164 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK------EL--NVMFIETSAKAGYNV 164 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHH------HH--TCEEEEEBTTTTBSH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHH------Hc--CCeEEEEeCCCCCCH
Confidence 999987332 12222233323357899999999999653211 11111111 11 258999999999999
Q ss_pred hHHHHHHHH
Q psy1758 220 NKLLENISL 228 (1527)
Q Consensus 220 ~eL~~~l~~ 228 (1527)
+++++.|..
T Consensus 165 ~~l~~~l~~ 173 (179)
T 2y8e_A 165 KQLFRRVAA 173 (179)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999864
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=180.96 Aligned_cols=156 Identities=22% Similarity=0.284 Sum_probs=113.8
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc--ccccCCceeEEEEEEEEEeCCeEEEEEeCCC----------hhhHHHHHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV--VFSEAGGITQHIGAYNVVTNHGSITFLDTPG----------HEAFTAMRA 134 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~--~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG----------~e~f~~~~~ 134 (1527)
.+.++|+++|++|+|||||+++|.+..+ .....+++|.+.....+ +.++.|||||| ++.|..++.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 3578999999999999999999998864 33455566666554433 34799999999 889988888
Q ss_pred hhcccc---CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEE
Q psy1758 135 RGAKVT---DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 135 ~~~~~a---D~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
.+++.+ |++++|+|++++......+.+..+...++|+++|+||+|+.+... .....++..... .....++++
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 173 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLN----IDPEDELIL 173 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT----CCTTSEEEE
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHc----ccCCCceEE
Confidence 777666 999999999998888777777777778999999999999976432 222222221111 123468999
Q ss_pred eeccCCCChhHHHHHHHHH
Q psy1758 211 ISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 211 iSAktg~gI~eL~~~l~~~ 229 (1527)
+||++|.|+++++++|...
T Consensus 174 ~Sa~~~~gv~~l~~~l~~~ 192 (195)
T 1svi_A 174 FSSETKKGKDEAWGAIKKM 192 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHH
T ss_pred EEccCCCCHHHHHHHHHHH
Confidence 9999999999999999643
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.9e-18 Score=186.46 Aligned_cols=157 Identities=20% Similarity=0.171 Sum_probs=117.7
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEE
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~ 143 (1527)
..+.++|+++|++|+|||||+++|.+..+.....++++.+.....+.+++ ..+.||||||++.|..++..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34568999999999999999999999888777777788777777777777 4789999999999998888899999999
Q ss_pred EEEEeCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 144 VLVVAADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 144 IlVvda~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
++|+|+++.... .|...+......++|+++|+||+|+...... .....+.. .++ ++++++||++|.|
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~~Sa~~~~g 168 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK------ELG--IPFIESSAKNDDN 168 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHH------HHT--CCEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHH------HcC--CEEEEEeCCCCCC
Confidence 999999984322 2222232222347899999999999532211 11111211 111 4899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
|++++++|....
T Consensus 169 i~~l~~~l~~~~ 180 (213)
T 3cph_A 169 VNEIFFTLAKLI 180 (213)
T ss_dssp SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998554
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-18 Score=186.57 Aligned_cols=158 Identities=17% Similarity=0.179 Sum_probs=105.6
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+..+|+++|++|+|||||+++|.+..+.. ..+ |.......+.+++..+.+|||||++.|..++..+++.+|++++|
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVP--TLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFL 99 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------C--CCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCC--CCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEE
Confidence 456789999999999999999998876532 222 22222356677888999999999999999998999999999999
Q ss_pred EeCCCCCcHH-HHHHHHHHH----HcCCCEEEEEEcccCCcch-hHHHHHHHhhhcc--------cccccCCCCcEEEee
Q psy1758 147 VAADDGVMPQ-TREAIAHAK----ISGVPLIVAINKIDKLDIN-LDRIKQDLISEQV--------IPEEYGGASPFISIS 212 (1527)
Q Consensus 147 vda~~g~~~q-t~e~i~~~~----~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~--------~~~~~~~~~~v~~iS 212 (1527)
+|+++....+ ....+..+. ..++|+++|+||+|+.+.. .++....+..... ........++++++|
T Consensus 100 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 179 (198)
T 1f6b_A 100 VDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCS 179 (198)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECB
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEE
Confidence 9999854322 222333332 3579999999999997532 2222222211110 000011346899999
Q ss_pred ccCCCChhHHHHHHH
Q psy1758 213 AKTGVGINKLLENIS 227 (1527)
Q Consensus 213 Aktg~gI~eL~~~l~ 227 (1527)
|++|.|++++|++|.
T Consensus 180 A~~g~gv~~l~~~l~ 194 (198)
T 1f6b_A 180 VLKRQGYGEGFRWMA 194 (198)
T ss_dssp TTTTBSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 999999999999986
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.8e-18 Score=185.09 Aligned_cols=158 Identities=18% Similarity=0.139 Sum_probs=110.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+..+|+++|++|+|||||+++|.+..+.. ..+ |.......+.+++..+.+|||||++.|..++..+++.+|++++|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 97 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQP--TWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFL 97 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCC--CCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-ccc--CCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 466799999999999999999999877632 222 22223456677889999999999999999988999999999999
Q ss_pred EeCCCCCcHHH-HHHHHHHH----HcCCCEEEEEEcccCCcch-hHHHHHHHhhhccccc---ccCCCCcEEEeeccCCC
Q psy1758 147 VAADDGVMPQT-REAIAHAK----ISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPE---EYGGASPFISISAKTGV 217 (1527)
Q Consensus 147 vda~~g~~~qt-~e~i~~~~----~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~---~~~~~~~v~~iSAktg~ 217 (1527)
+|+++....+. ...+..+. ..+.|+++|+||+|+.+.. .++..+.+........ .....++++++||++|.
T Consensus 98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 177 (190)
T 1m2o_B 98 VDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN 177 (190)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTB
T ss_pred EECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCC
Confidence 99998543222 22232222 3578999999999997632 2222222111100000 01134689999999999
Q ss_pred ChhHHHHHHH
Q psy1758 218 GINKLLENIS 227 (1527)
Q Consensus 218 gI~eL~~~l~ 227 (1527)
|++++|++|.
T Consensus 178 gi~~l~~~l~ 187 (190)
T 1m2o_B 178 GYLEAFQWLS 187 (190)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999999985
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-18 Score=179.78 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=111.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|..++..+++.+|++++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence 457899999999999999999998877655555555555444455554 478999999999999999999999999999
Q ss_pred EEeCCCCCcHHH-HHHHHHHH---HcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQT-REAIAHAK---ISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt-~e~i~~~~---~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+. ..++..+. ..++|+++|+||+|+.+.... .....+.. .+ .++++++||++|.|+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~g~gi 156 (170)
T 1r2q_A 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYAD------DN--SLLFMETSAKTSMNV 156 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------HT--TCEEEECCTTTCTTH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHH------Hc--CCeEEEEeCCCCCCH
Confidence 999998433222 22223332 246889999999998653211 11111111 11 258999999999999
Q ss_pred hHHHHHHHH
Q psy1758 220 NKLLENISL 228 (1527)
Q Consensus 220 ~eL~~~l~~ 228 (1527)
++++++|..
T Consensus 157 ~~l~~~i~~ 165 (170)
T 1r2q_A 157 NEIFMAIAK 165 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999864
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.1e-18 Score=181.99 Aligned_cols=156 Identities=22% Similarity=0.269 Sum_probs=104.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC---CeEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN---HGSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~---~~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
+.++|+++|++|+|||||+++|.+..+.....++++.+.....+.++ ...+.+|||||++.|...+..+++.+|+++
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV 86 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEE
Confidence 45789999999999999999999988776666666666666666655 247899999999999999999999999999
Q ss_pred EEEeCCCCCcHH----HHHHHHHHHH----cCCCEEEEEEcccCCcchh---HHHHHHHhhhcccccccCCCCcEEEeec
Q psy1758 145 LVVAADDGVMPQ----TREAIAHAKI----SGVPLIVAINKIDKLDINL---DRIKQDLISEQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 145 lVvda~~g~~~q----t~e~i~~~~~----~~vpiIvviNKiDl~~~~~---~~~~~~l~~~~~~~~~~~~~~~v~~iSA 213 (1527)
+|+|+++....+ |...+..... .++|+++|+||+|+..... ......+... ....+++++||
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~-------~~~~~~~~~Sa 159 (182)
T 1ky3_A 87 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS-------LGDIPLFLTSA 159 (182)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH-------TTSCCEEEEBT
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh-------cCCCeEEEEec
Confidence 999999843322 2222222221 5789999999999964321 1111112110 12358999999
Q ss_pred cCCCChhHHHHHHHHHH
Q psy1758 214 KTGVGINKLLENISLQA 230 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~~ 230 (1527)
++|.|+++++++|....
T Consensus 160 ~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 160 KNAINVDTAFEEIARSA 176 (182)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999997543
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=179.42 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=115.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEE-EEEEEeCC-----------eEEEEEeCCChhhHHHHHHh
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIG-AYNVVTNH-----------GSITFLDTPGHEAFTAMRAR 135 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~-~~~~~~~~-----------~~i~~iDTPG~e~f~~~~~~ 135 (1527)
+.++|+++|++|+|||||+++|.+..+.....++++.+.. ...+..++ ..+.||||||++.|..++..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 89 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTA 89 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHH
Confidence 4578999999999999999999998876666666666665 44555553 47999999999999999999
Q ss_pred hccccCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcE
Q psy1758 136 GAKVTDIVVLVVAADDGVMPQT-REAIAHAKI----SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPF 208 (1527)
Q Consensus 136 ~~~~aD~~IlVvda~~g~~~qt-~e~i~~~~~----~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v 208 (1527)
+++.+|++++|+|+++....+. ..++..+.. .++|+++|+||+|+.+... ......+.. .+ .+++
T Consensus 90 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~ 161 (195)
T 3bc1_A 90 FFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE------KY--GIPY 161 (195)
T ss_dssp TTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH------HH--TCCE
T ss_pred HHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH------Hc--CCCE
Confidence 9999999999999998443322 222232322 5789999999999965211 111111111 11 2489
Q ss_pred EEeeccCCCChhHHHHHHHHHH
Q psy1758 209 ISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 209 ~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
+++||++|.|++++++.|....
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998654
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.6e-18 Score=183.02 Aligned_cols=159 Identities=17% Similarity=0.199 Sum_probs=113.5
Q ss_pred cccCCCEEEEEecCCCChhHHHHHHHccc-cccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEE
Q psy1758 65 SLVRAPIVTIMGHVDHGKTSLLDYIRKTN-VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 65 ~~~r~~~V~IvG~~~~GKTSLl~~L~~~~-~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~ 143 (1527)
...+.++|+++|++|+|||||+++|.+.. +.....+++ ......+.+++..+.||||||++.|..++..+++.+|++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTI--GFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCS--SEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcc--ceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 34567899999999999999999999877 344443333 344556677788999999999999999999999999999
Q ss_pred EEEEeCCCCCcH-HHHHHHHHHHH------cCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 144 VLVVAADDGVMP-QTREAIAHAKI------SGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 144 IlVvda~~g~~~-qt~e~i~~~~~------~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
++|+|+++.... .....+..+.. .++|+++|+||+|+.+.. .++....+..... ....++++++||++
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENI----KDKPWHICASDAIK 170 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGC----CSSCEEEEECBTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhc----cCCceEEEEccCCC
Confidence 999999984322 22223333322 478999999999997632 2222222211111 01245899999999
Q ss_pred CCChhHHHHHHHHH
Q psy1758 216 GVGINKLLENISLQ 229 (1527)
Q Consensus 216 g~gI~eL~~~l~~~ 229 (1527)
|.|+++++++|...
T Consensus 171 ~~gi~~l~~~l~~~ 184 (190)
T 2h57_A 171 GEGLQEGVDWLQDQ 184 (190)
T ss_dssp TBTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHH
Confidence 99999999999754
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-18 Score=181.03 Aligned_cols=154 Identities=20% Similarity=0.167 Sum_probs=110.6
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++|+|||||+++|.+..+.....++++.+.....+..++. .+.||||||++.|..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEE
Confidence 468999999999999999999998887677777777777677777653 789999999999998888899999999999
Q ss_pred EeCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 147 VAADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 147 vda~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+|+++.... .|...+......+.|+++|+||+|+..... .+....+.. .+ .++++++||++|.|+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~gv~~ 154 (170)
T 1g16_A 83 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK------EL--GIPFIESSAKNDDNVNE 154 (170)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHH------HH--TCCEEECBTTTTBSHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHH------Hc--CCeEEEEECCCCCCHHH
Confidence 999984332 222222222234789999999999953221 111111211 11 24899999999999999
Q ss_pred HHHHHHHHH
Q psy1758 222 LLENISLQA 230 (1527)
Q Consensus 222 L~~~l~~~~ 230 (1527)
+++.|....
T Consensus 155 l~~~l~~~~ 163 (170)
T 1g16_A 155 IFFTLAKLI 163 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999997553
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.7e-18 Score=178.56 Aligned_cols=153 Identities=23% Similarity=0.250 Sum_probs=110.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++.. ....+..++. .+.||||||++.|..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 34789999999999999999999888765555544432 2444555654 58899999999999999999999999999
Q ss_pred EEeCCCCCcHHH-HHHH----HHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 146 VVAADDGVMPQT-REAI----AHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 146 Vvda~~g~~~qt-~e~i----~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
|+|+++....+. ...+ ......+.|+++|+||+|+.+... ......+.. .+ .++++++||++|.|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~g 152 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE------EW--GCPFMETSAKSKTM 152 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH------HH--TSCEEEECTTCHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH------Hh--CCCEEEecCCCCcC
Confidence 999998432211 1122 222235799999999999864221 111111111 11 24899999999999
Q ss_pred hhHHHHHHHHH
Q psy1758 219 INKLLENISLQ 229 (1527)
Q Consensus 219 I~eL~~~l~~~ 229 (1527)
++++++.|...
T Consensus 153 i~~l~~~l~~~ 163 (167)
T 1kao_A 153 VDELFAEIVRQ 163 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999754
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-18 Score=182.92 Aligned_cols=156 Identities=24% Similarity=0.215 Sum_probs=111.0
Q ss_pred ccccCCCEEEEEecCCCChhHHHHHHHccccc-cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCE
Q psy1758 64 ESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDI 142 (1527)
Q Consensus 64 ~~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~ 142 (1527)
....+..+|+++|++|+|||||+++|.+..+. .....+.+ ...+.+++..+.||||||++.|..++..+++.+|+
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN----VEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSS----CEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCcee----eEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 34456789999999999999999999988762 12222222 34456678899999999999999999999999999
Q ss_pred EEEEEeCCCCCcHH-HHHHHHHHH----HcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 143 VVLVVAADDGVMPQ-TREAIAHAK----ISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 143 ~IlVvda~~g~~~q-t~e~i~~~~----~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
+++|+|+++....+ ..+.+..+. ..++|+++|+||+|+.+.. ..++...+..... ....++++++||++|
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~g 167 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSI----KDHQWHIQACCALTG 167 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC----CSSCEEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccc----cCCceEEEEccCCCC
Confidence 99999999864333 333333333 3578999999999997632 2222222211111 112358999999999
Q ss_pred CChhHHHHHHH
Q psy1758 217 VGINKLLENIS 227 (1527)
Q Consensus 217 ~gI~eL~~~l~ 227 (1527)
.|+++++++|.
T Consensus 168 ~gi~~l~~~l~ 178 (181)
T 2h17_A 168 EGLCQGLEWMM 178 (181)
T ss_dssp BTHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 99999999985
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.8e-18 Score=177.90 Aligned_cols=154 Identities=25% Similarity=0.281 Sum_probs=110.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....+++.... ...+..++ ..+.||||||++.|..++..+++.+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 346899999999999999999998877655555544433 23344443 378899999999999999999999999999
Q ss_pred EEeCCCCCc----HHHHHHHHH-HHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 146 VVAADDGVM----PQTREAIAH-AKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 146 Vvda~~g~~----~qt~e~i~~-~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
|+|+++... ..+.+.+.. ....++|+++|+||+|+.+... ......+.. .+ ...+++++||++|.|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~-~~~~~~~~Sa~~~~g 153 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR------QW-CNCAFLESSAKSKIN 153 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH------HT-TSCEEEECBTTTTBS
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH------Hc-cCCcEEEecCCCCCC
Confidence 999998322 122222222 2234799999999999965321 111111111 11 235899999999999
Q ss_pred hhHHHHHHHHH
Q psy1758 219 INKLLENISLQ 229 (1527)
Q Consensus 219 I~eL~~~l~~~ 229 (1527)
+++++++|...
T Consensus 154 i~~l~~~l~~~ 164 (167)
T 1c1y_A 154 VNEIFYDLVRQ 164 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999754
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.8e-18 Score=180.40 Aligned_cols=155 Identities=18% Similarity=0.165 Sum_probs=113.6
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+.++|+++|++|+|||||+++|.+..+.....+++..... ..+..++. .+.||||||++.|..++..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 35578999999999999999999998776666665555544 55566664 7889999999999988899999999999
Q ss_pred EEEeCCCCCcH----HHHHHH-HHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 145 LVVAADDGVMP----QTREAI-AHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 145 lVvda~~g~~~----qt~e~i-~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+|+|+++.... .|...+ ......++|+++|+||+|+.+... ......+.. .+ .++++++||++|.
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~~~Sa~~~~ 157 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGA------SH--HVAYFEASAKLRL 157 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHH------HT--TCEEEECBTTTTB
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH------Hc--CCeEEEecCCCCC
Confidence 99999983321 122122 223345789999999999965321 111111111 11 3589999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
|+++++++|....
T Consensus 158 gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 158 NVDEAFEQLVRAV 170 (181)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998654
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=178.75 Aligned_cols=154 Identities=20% Similarity=0.241 Sum_probs=110.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc-cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
.+.++|+++|++|+|||||+++|.+..+. ..+..|. ....+.+++..+.+|||||++.|..++..+++.+|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~----~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGF----NIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTE----EEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCe----EEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 35689999999999999999999887642 1222232 234556678899999999999999999999999999999
Q ss_pred EEeCCCCCcHHH-HHHHHHH----HHcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQT-REAIAHA----KISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt-~e~i~~~----~~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+. .+.+..+ ...++|+++|+||+|+.+... ++....+.... .....++++++||++|.|+
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~g~gi 165 (181)
T 1fzq_A 90 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHT----IRDRVWQIQSCSALTGEGV 165 (181)
T ss_dssp EEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGG----CCSSCEEEEECCTTTCTTH
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchh----ccCCceEEEEccCCCCCCH
Confidence 999998543222 2233322 125789999999999976432 22222221110 0112358999999999999
Q ss_pred hHHHHHHHH
Q psy1758 220 NKLLENISL 228 (1527)
Q Consensus 220 ~eL~~~l~~ 228 (1527)
+++|++|..
T Consensus 166 ~~l~~~l~~ 174 (181)
T 1fzq_A 166 QDGMNWVCK 174 (181)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999964
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=177.28 Aligned_cols=152 Identities=18% Similarity=0.192 Sum_probs=112.6
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++|+|||||+++|.+..+.....++++.+.....+..++. .+.+|||||++.|..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 468999999999999999999998876666666666665555666554 789999999999999999999999999999
Q ss_pred EeCCCCCcHHHH-HHHHHHH---HcCCCEEEEEEcccCCcchh-----HHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 147 VAADDGVMPQTR-EAIAHAK---ISGVPLIVAINKIDKLDINL-----DRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 147 vda~~g~~~qt~-e~i~~~~---~~~vpiIvviNKiDl~~~~~-----~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+|+++....+.. .++..+. ..++|+++|+||+|+..... ......+.. .+ .++++++||++|.
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~------~~--~~~~~~~Sa~~~~ 154 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAE------EK--GLLFFETSAKTGE 154 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH------HH--TCEEEECCTTTCT
T ss_pred EecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHH------Hc--CCEEEEEeCCCCC
Confidence 999984332222 2222222 24789999999999965311 111111111 11 2489999999999
Q ss_pred ChhHHHHHHHH
Q psy1758 218 GINKLLENISL 228 (1527)
Q Consensus 218 gI~eL~~~l~~ 228 (1527)
|+++++++|..
T Consensus 155 gi~~l~~~l~~ 165 (170)
T 1ek0_A 155 NVNDVFLGIGE 165 (170)
T ss_dssp THHHHHHHHHT
T ss_pred CHHHHHHHHHH
Confidence 99999999863
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=186.28 Aligned_cols=161 Identities=18% Similarity=0.262 Sum_probs=114.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCCh------hh----HHHHHHhh
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGH------EA----FTAMRARG 136 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~------e~----f~~~~~~~ 136 (1527)
.+.++|+++|++|+|||||+++|.+..+.....+++|.+.....+...+..+.||||||+ +. |.... ..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~-~~ 105 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTIT-AL 105 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHH-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHH-Hh
Confidence 467899999999999999999999988877777888888888888888889999999998 54 33333 34
Q ss_pred ccccCEEEEEEeCCCCCc---HHHHHHHHHHHHc--CCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEE
Q psy1758 137 AKVTDIVVLVVAADDGVM---PQTREAIAHAKIS--GVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 137 ~~~aD~~IlVvda~~g~~---~qt~e~i~~~~~~--~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
+..+|++++|+|+++... ..+.+++..+... ++|+++|+||+|+.+... .......... .....+..+++++
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQ--ILDNVKNPIKFSS 183 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHH--HHHHCCSCEEEEE
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHH--HHHhcCCCceEEE
Confidence 678899999999998644 3345556666554 899999999999975321 1111101100 1111122358999
Q ss_pred eeccCCCChhHHHHHHHHHH
Q psy1758 211 ISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 211 iSAktg~gI~eL~~~l~~~~ 230 (1527)
+||++|.||+++|++|....
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHH
Confidence 99999999999999997543
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=185.44 Aligned_cols=159 Identities=25% Similarity=0.234 Sum_probs=107.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC---CeEEEEEeCCChhhHHH-HHHhhccccCE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN---HGSITFLDTPGHEAFTA-MRARGAKVTDI 142 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~---~~~i~~iDTPG~e~f~~-~~~~~~~~aD~ 142 (1527)
.+.++|+++|++|+|||||+++|.+..+..... +++.+... +.++ +..+.+|||||++.|.. ++..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 356899999999999999999999888654443 44444443 5555 56899999999999998 78888999999
Q ss_pred EEEEEeCCCCC--cHHHHHHHHHH------HHcCCCEEEEEEcccCCcch-hHHHHHHHhhhcc----------------
Q psy1758 143 VVLVVAADDGV--MPQTREAIAHA------KISGVPLIVAINKIDKLDIN-LDRIKQDLISEQV---------------- 197 (1527)
Q Consensus 143 ~IlVvda~~g~--~~qt~e~i~~~------~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~---------------- 197 (1527)
+|+|+|+++.. .....+.|... ...++|+++|+||+|+.... .......+.....
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999998711 11122222221 12468999999999997643 2222222211000
Q ss_pred -----ccc---------ccCCCCcEEEeeccCC------CChhHHHHHHHH
Q psy1758 198 -----IPE---------EYGGASPFISISAKTG------VGINKLLENISL 228 (1527)
Q Consensus 198 -----~~~---------~~~~~~~v~~iSAktg------~gI~eL~~~l~~ 228 (1527)
... .+...++|+++||++| .||+++|++|..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~ 212 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK 212 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHH
Confidence 000 1111578999999999 999999999864
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=179.13 Aligned_cols=154 Identities=20% Similarity=0.299 Sum_probs=114.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|....+.....++++... ...+..++. .+.+|||||++.|..++..+++.+|+++
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 4567899999999999999999998887766666666555 455556665 4667999999999999999999999999
Q ss_pred EEEeCCCCCc----HHHHHHH-HHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeecc-CC
Q psy1758 145 LVVAADDGVM----PQTREAI-AHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAK-TG 216 (1527)
Q Consensus 145 lVvda~~g~~----~qt~e~i-~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAk-tg 216 (1527)
+|+|+++... ..|...+ ......++|+++|+||+|+.+... ......+.. .++ ++++++||+ +|
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~------~~~--~~~~~~Sa~~~~ 166 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT------KYN--IPYIETSAKDPP 166 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH------HHT--CCEEEEBCSSSC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH------HhC--CeEEEeccCCCC
Confidence 9999998422 2222222 223346789999999999865211 111111111 122 589999999 99
Q ss_pred CChhHHHHHHHHH
Q psy1758 217 VGINKLLENISLQ 229 (1527)
Q Consensus 217 ~gI~eL~~~l~~~ 229 (1527)
.|++++|+.|...
T Consensus 167 ~~v~~l~~~l~~~ 179 (183)
T 3kkq_A 167 LNVDKTFHDLVRV 179 (183)
T ss_dssp BSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999754
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=181.12 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=115.8
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--------------------------------
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH-------------------------------- 115 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~-------------------------------- 115 (1527)
+.++|+++|++|+|||||+++|.+..+.....++++.++....+..++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 467899999999999999999999888766667776666666666654
Q ss_pred -------eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHH-HHHHHH-HcCCCEEEEEEcccCCcc--h
Q psy1758 116 -------GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTRE-AIAHAK-ISGVPLIVAINKIDKLDI--N 184 (1527)
Q Consensus 116 -------~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e-~i~~~~-~~~vpiIvviNKiDl~~~--~ 184 (1527)
..+.||||||++.|...+..+++.+|++++|+|++++...+... ++..+. ..+.|+++|+||+|+... .
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~ 165 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVD 165 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSC
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCC
Confidence 67899999999999999999999999999999999854333322 223333 246899999999994221 1
Q ss_pred hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 185 LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
..+... +.. .+ .++++++||++|.|+++++++|....
T Consensus 166 ~~~~~~-~~~------~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 166 ILEVQK-YAQ------DN--NLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp HHHHHH-HHH------HT--TCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHH-HHH------Hc--CCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 122211 111 11 25899999999999999999997543
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-17 Score=177.34 Aligned_cols=156 Identities=24% Similarity=0.293 Sum_probs=118.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCC----------hhhHHHHHHh
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPG----------HEAFTAMRAR 135 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG----------~e~f~~~~~~ 135 (1527)
...++|+++|++|+|||||+++|.+... .....+++|.+...... +.++.+||||| ++.|..++..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV---NSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE---TTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE---CCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 4567999999999999999999998874 44555666665544332 45789999999 7888887776
Q ss_pred hcccc---CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHH-HHHHHhhhcccccccCCCCcEEEe
Q psy1758 136 GAKVT---DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR-IKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 136 ~~~~a---D~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
+++.+ |++++|+|++++........+..+...++|+++|+||+|+.+..... ....+... . ...+.++++++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~ 173 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKV---F-SKYGEYTIIPT 173 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHH---H-HSSCCSCEEEC
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHH---H-hhcCCCceEEE
Confidence 66555 99999999999888888787888888899999999999997543222 22222111 1 11134689999
Q ss_pred eccCCCChhHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~ 229 (1527)
||++|.||+++|++|...
T Consensus 174 Sa~~~~gv~~l~~~l~~~ 191 (195)
T 3pqc_A 174 SSVTGEGISELLDLISTL 191 (195)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHH
Confidence 999999999999999754
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7.6e-18 Score=180.49 Aligned_cols=149 Identities=21% Similarity=0.279 Sum_probs=111.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhH----HH----HHHhhcc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAF----TA----MRARGAK 138 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f----~~----~~~~~~~ 138 (1527)
++.+|+++|++|+|||||+++|.+..+ ..+..+++|.+.....+.+++..+.+|||||++++ .. ....+++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 356899999999999999999998764 45667888888877888888889999999997542 11 1224578
Q ss_pred ccCEEEEEEeCCCCCcHHHHHHHHHHHH---cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 139 VTDIVVLVVAADDGVMPQTREAIAHAKI---SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 139 ~aD~~IlVvda~~g~~~qt~e~i~~~~~---~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
.+|++++|+|+++....+..+++..+.. .++|+++|+||+|+.+... ..... ...+++++||++
T Consensus 83 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----------~~~~~--~~~~~~~~SA~~ 149 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL-----------GMSEV--NGHALIRLSART 149 (172)
T ss_dssp TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----------EEEEE--TTEEEEECCTTT
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh-----------hhhhc--cCCceEEEeCCC
Confidence 9999999999998654433344433332 3689999999999854210 00111 235899999999
Q ss_pred CCChhHHHHHHHHH
Q psy1758 216 GVGINKLLENISLQ 229 (1527)
Q Consensus 216 g~gI~eL~~~l~~~ 229 (1527)
|.|++++|+.|...
T Consensus 150 g~gv~~l~~~l~~~ 163 (172)
T 2gj8_A 150 GEGVDVLRNHLKQS 163 (172)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999754
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=179.56 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=113.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|..++..+++.+|++++
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 90 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEE
Confidence 457899999999999999999999887666556555555555555554 378999999999999999999999999999
Q ss_pred EEeCCCCCcHHH-HHHHHHHHH---cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQT-REAIAHAKI---SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt-~e~i~~~~~---~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+. ..++..+.. .++|+++|+||+|+.+... ......+.. .+ .++++++||++|.|+
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~g~gi 162 (181)
T 2efe_B 91 VFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQ------EN--GLFFMETSAKTATNV 162 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH------HT--TCEEEECCSSSCTTH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHH------Hc--CCEEEEEECCCCCCH
Confidence 999998443222 233333333 3788999999999965321 111111111 11 258999999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
++++++|...
T Consensus 163 ~~l~~~l~~~ 172 (181)
T 2efe_B 163 KEIFYEIARR 172 (181)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999999743
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=182.42 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=108.8
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+..+|+++|++|+|||||+++|....+.. ..+ |.......+.+.+..+.+|||||++.|..++..+++.+|++++|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv 103 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIP--TIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 103 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEE--ETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCC--cCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 456899999999999999999998877642 223 33344455677888999999999999999998999999999999
Q ss_pred EeCCCCCcHH-HHHHHHHHHH----cCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQ-TREAIAHAKI----SGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~q-t~e~i~~~~~----~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++....+ ..+.+..+.. .++|+++|+||+|+.+... .++...+.... .....++++++||++|.|++
T Consensus 104 ~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~----~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 104 VDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQH----LRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG----CSSCCEEEEECBTTTTBTHH
T ss_pred EECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCccc----ccCCceEEEECcCCCcCCHH
Confidence 9999853322 2233333322 3789999999999976422 22222221111 11123589999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
+++++|...
T Consensus 180 ~l~~~l~~~ 188 (192)
T 2b6h_A 180 DGLDWLSHE 188 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999743
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-18 Score=183.91 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=110.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+.++|+++|++|+|||||+++|....+.....+++.... ...+..++. .+.||||||++.|..++..+++.+|++++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 457899999999999999999998887655555555444 555566664 67899999999998888889999999999
Q ss_pred EEeCCCCCcHHHH-----HHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 146 VVAADDGVMPQTR-----EAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 146 Vvda~~g~~~qt~-----e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
|+|+++....+.. +....+...++|+++|+||+|+.+.... .....+.. .+ .++++++||++|.|
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~~ 155 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE------SW--NAAFLESSAKENQT 155 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHH------HT--TCEEEECCTTSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHH------Hh--CCcEEEEecCCCCC
Confidence 9999983222211 1222223457899999999998642211 11111111 11 24899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
++++|+.|....
T Consensus 156 v~~l~~~l~~~~ 167 (181)
T 3t5g_A 156 AVDVFRRIILEA 167 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998654
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8e-18 Score=185.47 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=111.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|....+.....+++ .+.....+..++. .+.||||||++.|..++..+++.+|+++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCS-EEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCee-cceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 466899999999999999999999887765554444 4444555556655 5569999999999999999999999999
Q ss_pred EEEeCCCCCcHHHH--HHHHHHHH--cCCCEEEEEEcccCCcchhHHHH-HHHhh------hcccccccCCCCcEEEeec
Q psy1758 145 LVVAADDGVMPQTR--EAIAHAKI--SGVPLIVAINKIDKLDINLDRIK-QDLIS------EQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 145 lVvda~~g~~~qt~--e~i~~~~~--~~vpiIvviNKiDl~~~~~~~~~-~~l~~------~~~~~~~~~~~~~v~~iSA 213 (1527)
+|+|+++....+.. .++..+.. .++|+++|+||+|+.+....... ..... .........+..+++++||
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 186 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeC
Confidence 99999985433332 22333333 38999999999999764321111 00000 0000001123357999999
Q ss_pred cCCCChhHHHHHHHH
Q psy1758 214 KTGVGINKLLENISL 228 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~ 228 (1527)
++|.||+++|+.|..
T Consensus 187 ~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 187 LTQRGLKTVFDEAIR 201 (204)
T ss_dssp TTCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999999864
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.2e-18 Score=186.26 Aligned_cols=156 Identities=16% Similarity=0.083 Sum_probs=107.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+.++|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|..++..+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 3557899999999999999999999888766667777666666666776 47899999999999888888999999999
Q ss_pred EEEeCCCCCcHH----HHHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 145 LVVAADDGVMPQ----TREAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 145 lVvda~~g~~~q----t~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|+|+++....+ |...+......++|+++|+||+|+...... .....+.. .. .++++++||++|.|
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~~~SA~~g~g 174 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQ------EN--ELMFLETSALTGEN 174 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------HT--TCEEEEECTTTCTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHH------Hc--CCEEEEEeCCCCCC
Confidence 999999843322 222222222357899999999999642211 11111111 11 25899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
++++|++|....
T Consensus 175 i~~l~~~l~~~i 186 (200)
T 2o52_A 175 VEEAFLKCARTI 186 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998543
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=181.80 Aligned_cols=155 Identities=15% Similarity=0.143 Sum_probs=114.5
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
..++|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|..++..+++.+|++|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 86 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL 86 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence 347899999999999999999999887666556555555555555554 478999999999999999999999999999
Q ss_pred EEeCCCCCcHHHH-HHHHHHHH---cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQTR-EAIAHAKI---SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt~-e~i~~~~~---~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+.. .++..+.. .+.|+++|+||+|+.+... ......+.. .+ .++++++||++|.|+
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~gi 158 (203)
T 1zbd_A 87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLAD------HL--GFEFFEASAKDNINV 158 (203)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHH------HH--TCEEEECBTTTTBSS
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHH------HC--CCeEEEEECCCCCCH
Confidence 9999984332222 22233332 4789999999999965321 111111111 12 148999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
+++|++|....
T Consensus 159 ~~l~~~l~~~i 169 (203)
T 1zbd_A 159 KQTFERLVDVI 169 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998543
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=9e-18 Score=177.96 Aligned_cols=153 Identities=21% Similarity=0.212 Sum_probs=111.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+...+ ..+.+|||||++.|..++..+++.+|++++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 84 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEE
Confidence 447899999999999999999999887555455444444444445554 478999999999999999999999999999
Q ss_pred EEeCCCCCcHHHH-HHHHHHH---HcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQTR-EAIAHAK---ISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt~-e~i~~~~---~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+.. .++..+. ..++|+++|+||+|+.+... .+....+.. .+ ..+++++||++|.|+
T Consensus 85 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~~~Sa~~~~~i 156 (170)
T 1z0j_A 85 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYAD------SI--HAIFVETSAKNAINI 156 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH------HT--TCEEEECBTTTTBSH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHH------Hc--CCEEEEEeCCCCcCH
Confidence 9999985432222 2223333 34678999999999975321 111111111 11 258999999999999
Q ss_pred hHHHHHHHH
Q psy1758 220 NKLLENISL 228 (1527)
Q Consensus 220 ~eL~~~l~~ 228 (1527)
+++++.|..
T Consensus 157 ~~l~~~i~~ 165 (170)
T 1z0j_A 157 NELFIEISR 165 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999964
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=9.8e-18 Score=182.36 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=107.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccc----------cCCceeEEEEEEEE-EeC--CeEEEEEeCCChhhHHHHHH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFS----------EAGGITQHIGAYNV-VTN--HGSITFLDTPGHEAFTAMRA 134 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~----------~~~giT~~~~~~~~-~~~--~~~i~~iDTPG~e~f~~~~~ 134 (1527)
+..+|+++|++|+|||||++.+.+...... ..+++..+.....+ ..+ ...+.||||||++.|..++.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 92 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRK 92 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHH
Confidence 457899999999999999977765432221 11122222222112 222 34789999999999999999
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHH---------cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCC
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKI---------SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGA 205 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~---------~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~ 205 (1527)
.+++.+|++|+|+|++++...+..+.+..+.. .++|+++|+||+|+.+.........+.. .+ +.
T Consensus 93 ~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~------~~-~~ 165 (198)
T 3t1o_A 93 LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVD------PE-GK 165 (198)
T ss_dssp HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHC------TT-CC
T ss_pred HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHH------hc-CC
Confidence 99999999999999997655444444433322 5789999999999976422222222211 11 12
Q ss_pred CcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 206 SPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 206 ~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
.+++++||++|.|++++|++|....
T Consensus 166 ~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 166 FPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred ceEEEEecCCCcCHHHHHHHHHHHH
Confidence 3899999999999999999998654
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=183.85 Aligned_cols=156 Identities=21% Similarity=0.244 Sum_probs=117.9
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|..++..+++.+|++|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVL 86 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEE
Confidence 457899999999999999999999888777777777887777777666 478999999999999888899999999999
Q ss_pred EEeCCCCCcHH----HHHHHHHHHH----cCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 146 VVAADDGVMPQ----TREAIAHAKI----SGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 146 Vvda~~g~~~q----t~e~i~~~~~----~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
|+|+++....+ |...+..... .++|+++|+||+|+...... .....+... ....+++++||++|
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~g 159 (207)
T 1vg8_A 87 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS-------KNNIPYFETSAKEA 159 (207)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH-------TTSCCEEECBTTTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh-------cCCceEEEEeCCCC
Confidence 99999843322 2222222221 47899999999999742211 111111110 12358999999999
Q ss_pred CChhHHHHHHHHHH
Q psy1758 217 VGINKLLENISLQA 230 (1527)
Q Consensus 217 ~gI~eL~~~l~~~~ 230 (1527)
.|+++++++|....
T Consensus 160 ~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 160 INVEQAFQTIARNA 173 (207)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999997543
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=177.02 Aligned_cols=153 Identities=14% Similarity=0.119 Sum_probs=97.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHH-HHHhhccccCEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTA-MRARGAKVTDIVVLV 146 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~-~~~~~~~~aD~~IlV 146 (1527)
++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++. .+.+|||||++.|.. ++..+++.+|++++|
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 82 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIV 82 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEE
Confidence 57999999999999999999887765555555566666666667664 678999999999976 666678899999999
Q ss_pred EeCCCCCcHHH-HHHHHHHHH----cCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 147 VAADDGVMPQT-REAIAHAKI----SGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 147 vda~~g~~~qt-~e~i~~~~~----~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
+|+++....+. ..++..+.. .++|+++|+||+|+.+.... .....+.. .+ .++++++||++|.|+
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~~v 154 (169)
T 3q85_A 83 FSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG------TL--SCKHIETSAALHHNT 154 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH------HT--TCEEEECBTTTTBSH
T ss_pred EECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHH------Hc--CCcEEEecCccCCCH
Confidence 99998322111 122222222 37899999999998642211 11111111 11 248999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
+++|+.+....
T Consensus 155 ~~l~~~l~~~i 165 (169)
T 3q85_A 155 RELFEGAVRQI 165 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999997543
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-17 Score=194.22 Aligned_cols=163 Identities=28% Similarity=0.299 Sum_probs=127.2
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec-CeEEEEEeCCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-GTRINIIDTPGHAD 997 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-~~~iniiDTPGh~d 997 (1527)
+...-.|||+|++|+|||||+|+|++.... ......++|.......+.++ +++++||||||+.+
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~---------------i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~ 71 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVS---------------IISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 71 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCS---------------CCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCcc---------------ccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCc
Confidence 445668999999999999999999876321 12334567777777778888 99999999999977
Q ss_pred ch----------HHHHHHHHhcCEEEEEEeCCCCCChhHHHH-HHHHHHcCCccEEEEeccCCCC-C-ChhhhHHHHHHH
Q psy1758 998 FG----------GEVERILSMVDNVLLLIDAVEGPMPQTRFV-TRKALKLGFKPIVVVNKIDRSN-A-RPEWVVDATFDL 1064 (1527)
Q Consensus 998 f~----------~ev~~~l~~aD~ailVVDa~~G~~~qt~~~-~~~~~~~glp~IvviNKiD~~~-a-~~~~v~~~~~~~ 1064 (1527)
+. ..+..++..+|++++|+|++++...++..+ +..+...++|+++|+||+|+.. . ......+++.+.
T Consensus 72 ~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~ 151 (308)
T 3iev_A 72 PKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKK 151 (308)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHh
Confidence 55 667788999999999999999999999888 6777778999999999999962 2 122233333222
Q ss_pred HhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1065 FDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1065 ~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
+ + ...+++++||++|. |+++|++.+.+++|..
T Consensus 152 ~---~-----~~~~i~~vSA~~g~----------gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 152 H---P-----ELTEIVPISALKGA----------NLDELVKTILKYLPEG 183 (308)
T ss_dssp C---T-----TCCCEEECBTTTTB----------SHHHHHHHHHHHSCBC
T ss_pred c---c-----CCCeEEEEeCCCCC----------CHHHHHHHHHHhCccC
Confidence 1 1 12479999999998 9999999999999753
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=176.97 Aligned_cols=154 Identities=19% Similarity=0.207 Sum_probs=114.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+..++. .+.||||||++.|..++..+++.+|++++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 4578999999999999999999998876666666666666666666654 78999999999999888899999999999
Q ss_pred EEeCCCCCcHHHH-HHHHHHHH--cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 146 VVAADDGVMPQTR-EAIAHAKI--SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 146 Vvda~~g~~~qt~-e~i~~~~~--~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|+|+++....+.. .++..+.. .+.|+++|+||+|+.+... ......+.. .+ .++++++||++|.|++
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAK------RL--KLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHH------HH--TCEEEECBTTTTBSSH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHH------Hc--CCeEEEEecCCCCCHH
Confidence 9999984322211 22222222 4899999999999865321 111111111 11 2489999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
+++++|...
T Consensus 156 ~l~~~l~~~ 164 (168)
T 1z2a_A 156 EVFKYLAEK 164 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999754
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.73 E-value=7.4e-18 Score=192.81 Aligned_cols=153 Identities=22% Similarity=0.234 Sum_probs=119.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH------HHHhhc--cc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA------MRARGA--KV 139 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~------~~~~~~--~~ 139 (1527)
+.++|+++|++|+|||||+++|++..+..+..+|+|.+.....+...+..+.||||||++.|.. +...++ ..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 83 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGD 83 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcC
Confidence 3478999999999999999999998888888899999999988988889999999999877643 233444 58
Q ss_pred cCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHH-HHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 140 TDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR-IKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 140 aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|++++|+|+++. .....++..+...++|+++|+||+|+....... ....+. ..++ +|++++||++|.|
T Consensus 84 ~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~------~~lg--~~vi~~SA~~g~g 153 (258)
T 3a1s_A 84 ADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQ------KHLG--IPVVFTSSVTGEG 153 (258)
T ss_dssp CSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHH------HHHC--SCEEECCTTTCTT
T ss_pred CCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHH------HHcC--CCEEEEEeeCCcC
Confidence 9999999999973 344556666777899999999999985421100 011111 1122 6999999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
+++|++.+....
T Consensus 154 i~el~~~i~~~~ 165 (258)
T 3a1s_A 154 LEELKEKIVEYA 165 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999997643
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=177.09 Aligned_cols=153 Identities=19% Similarity=0.115 Sum_probs=100.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccccc-ccCCceeEEEEEEEEEeCCe--EEEEEeCCChhh--HHHHHHhhccccCE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVF-SEAGGITQHIGAYNVVTNHG--SITFLDTPGHEA--FTAMRARGAKVTDI 142 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~-~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~--f~~~~~~~~~~aD~ 142 (1527)
+.++|+++|++|+|||||+++|.+..+.. ....+.+... ..+..++. .+.+|||||++. +..+...+++.+|+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYE--RTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEE--EEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeE--EEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 45789999999999999999999887633 3334554433 33445554 788999999988 56677788899999
Q ss_pred EEEEEeCCCCCcHHHH-HHHHHHHH----cCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 143 VVLVVAADDGVMPQTR-EAIAHAKI----SGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 143 ~IlVvda~~g~~~qt~-e~i~~~~~----~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
+++|+|+++....+.. +++..+.. .++|+++|+||+|+.+.... .....+. ..+ .++++++||++
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~------~~~--~~~~~~~Sa~~ 152 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACA------VVF--DCKFIETSATL 152 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHH------HHH--TSEEEECBTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHH------HHc--CCeEEEEecCC
Confidence 9999999984322222 22333333 37899999999999753211 1111111 112 25899999999
Q ss_pred CCChhHHHHHHHHHH
Q psy1758 216 GVGINKLLENISLQA 230 (1527)
Q Consensus 216 g~gI~eL~~~l~~~~ 230 (1527)
|.|+++++++|....
T Consensus 153 g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 153 QHNVAELFEGVVRQL 167 (175)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998654
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=9e-18 Score=182.77 Aligned_cols=156 Identities=15% Similarity=0.112 Sum_probs=113.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+.++|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|..++..+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 4557899999999999999999999887655555555555444444444 47899999999999999999999999999
Q ss_pred EEEeCCCCCcHHH-HHHHHHHH---HcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 145 LVVAADDGVMPQT-REAIAHAK---ISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 145 lVvda~~g~~~qt-~e~i~~~~---~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|+|+++....+. ..++..+. ..++|+++|+||+|+..... ......+.. .. .++++++||++|.|
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~g 174 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAE------NN--GLLFLETSALDSTN 174 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------HT--TCEEEEECTTTCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHH------Hc--CCEEEEEeCCCCCC
Confidence 9999998433222 22223332 24789999999999965321 111111111 11 25899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
++++++.|....
T Consensus 175 i~~l~~~l~~~i 186 (193)
T 2oil_A 175 VELAFETVLKEI 186 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997543
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=9.7e-18 Score=184.64 Aligned_cols=155 Identities=16% Similarity=0.167 Sum_probs=117.5
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+.++|+++|++|+|||||+++|.+..+.....++++.+.....+.+++. .+.||||||++.|..++..+++.+|++++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vil 86 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII 86 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEE
Confidence 4578999999999999999999998887777777777776666777765 78999999999999999999999999999
Q ss_pred EEeCCCCCcHHHHH-HHHHHH---HcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQTRE-AIAHAK---ISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt~e-~i~~~~---~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+... ++..+. ..+.|+++|+||+|+.+... ......+.. .+ .++++++||++|.|+
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~g~gi 158 (206)
T 2bcg_Y 87 VYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD------AN--KMPFLETSALDSTNV 158 (206)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH------HT--TCCEEECCTTTCTTH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH------Hc--CCeEEEEeCCCCCCH
Confidence 99999844322222 222222 34689999999999975321 111111111 11 258999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
+++|++|....
T Consensus 159 ~~l~~~l~~~i 169 (206)
T 2bcg_Y 159 EDAFLTMARQI 169 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999997543
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=8.9e-18 Score=196.29 Aligned_cols=158 Identities=24% Similarity=0.250 Sum_probs=121.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC---
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD--- 997 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d--- 997 (1527)
+..+|+|+|++|+|||||+|+|++....+. ....++|.+.....+.+++.+++||||||+.+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~iv---------------s~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~ 70 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPI---------------SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 70 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCC---------------CSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeee---------------cCCCCceeEEEEEEEEeCCcEEEEecCccccchhh
Confidence 446899999999999999999997633211 11234444444455677899999999999988
Q ss_pred -----chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcc
Q psy1758 998 -----FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA 1070 (1527)
Q Consensus 998 -----f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~ 1070 (1527)
|...+..+++.+|++++|+|++++...++..++..+... ++|+++|+||+|+.+.+.+ +.+.+. .+ .
T Consensus 71 ~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~----~~-~ 144 (301)
T 1wf3_A 71 ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE-AMKAYH----EL-L 144 (301)
T ss_dssp HHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH-HHHHHH----HT-S
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH-HHHHHH----Hh-c
Confidence 667778889999999999999999888888888888777 8999999999999764321 222222 22 0
Q ss_pred cccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1071 TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1071 ~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
...+++++||++|. |++.|++.+.+.+|.
T Consensus 145 ----~~~~~~~iSA~~g~----------gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 145 ----PEAEPRMLSALDER----------QVAELKADLLALMPE 173 (301)
T ss_dssp ----TTSEEEECCTTCHH----------HHHHHHHHHHTTCCB
T ss_pred ----CcCcEEEEeCCCCC----------CHHHHHHHHHHhccc
Confidence 12368999999998 999999999998864
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=9.5e-18 Score=182.51 Aligned_cols=156 Identities=19% Similarity=0.136 Sum_probs=111.6
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+.....++++.+.....+..++. .+.||||||++.|..++..+++.+|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 34578999999999999999999998876655565565555555666664 7899999999999988889999999999
Q ss_pred EEEeCCCCCcHHH-HHHHHHHH---HcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 145 LVVAADDGVMPQT-REAIAHAK---ISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 145 lVvda~~g~~~qt-~e~i~~~~---~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|+|+++....+. ..++..+. ..++|+++|+||+|+.+... ......+.. .+ .++++++||++|.|
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~~~Sa~~~~g 170 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAR------EH--GLIFMETSAKTACN 170 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HH--TCEEEEECTTTCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHH------Hc--CCEEEEEeCCCCCC
Confidence 9999998432222 22222332 34789999999999964211 111111111 11 24899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
++++|+.|....
T Consensus 171 i~~l~~~l~~~i 182 (191)
T 2a5j_A 171 VEEAFINTAKEI 182 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997543
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=179.63 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=114.0
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHH-HHHHhhccccCE
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFT-AMRARGAKVTDI 142 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~-~~~~~~~~~aD~ 142 (1527)
..+.++|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|. .++..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 34568999999999999999999999888766666666666666666666 478999999999998 788888999999
Q ss_pred EEEEEeCCCCCc----HHHHHHHHHH-HHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 143 VVLVVAADDGVM----PQTREAIAHA-KISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 143 ~IlVvda~~g~~----~qt~e~i~~~-~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
+|+|+|+++... ..|.+.+... ...++|+++|+||+|+.+... ......+.. .+ .++++++||++
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~~~Sa~~ 168 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD------TH--SMPLFETSAKN 168 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH------HT--TCCEEECCSSS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH------Hc--CCEEEEEeCCc
Confidence 999999998322 2222222221 235789999999999965321 111111111 11 24899999999
Q ss_pred C---CChhHHHHHHHH
Q psy1758 216 G---VGINKLLENISL 228 (1527)
Q Consensus 216 g---~gI~eL~~~l~~ 228 (1527)
| .|++++|+.|..
T Consensus 169 ~~~~~~i~~l~~~l~~ 184 (189)
T 1z06_A 169 PNDNDHVEAIFMTLAH 184 (189)
T ss_dssp GGGGSCHHHHHHHHC-
T ss_pred CCcccCHHHHHHHHHH
Confidence 9 999999999864
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-17 Score=173.38 Aligned_cols=152 Identities=19% Similarity=0.201 Sum_probs=106.8
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++... ...+..++. .+.||||||++.|..++..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 357899999999999999999998887555544444333 334455554 78999999999999999999999999999
Q ss_pred EEeCCCCCcHHHH-HHHHHHH----HcCCCEEEEEEcccCCcchh---HHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 146 VVAADDGVMPQTR-EAIAHAK----ISGVPLIVAINKIDKLDINL---DRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 146 Vvda~~g~~~qt~-e~i~~~~----~~~vpiIvviNKiDl~~~~~---~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
|+|+++....+.. .++..+. ..++|+++|+||+|+.+... .+... +. ..+ .++++++||++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~------~~~--~~~~~~~Sa~~~~ 152 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-RA------DQW--NVNYVETSAKTRA 152 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHH-HH------HHH--TCEEEECCTTTCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHH-HH------HHc--CCeEEEeCCCCCC
Confidence 9999974322211 1112222 23789999999999965321 11111 11 112 2489999999999
Q ss_pred ChhHHHHHHHHH
Q psy1758 218 GINKLLENISLQ 229 (1527)
Q Consensus 218 gI~eL~~~l~~~ 229 (1527)
|+++++++|...
T Consensus 153 gi~~l~~~l~~~ 164 (168)
T 1u8z_A 153 NVDKVFFDLMRE 164 (168)
T ss_dssp THHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999754
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-18 Score=197.12 Aligned_cols=150 Identities=22% Similarity=0.320 Sum_probs=118.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH----------HHHhh-
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA----------MRARG- 136 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~----------~~~~~- 136 (1527)
+.++|+++|++|+|||||+|+|++..+..+..+|+|.+.....+.+.+..+.||||||++.|.. ....+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 4578999999999999999999999988889999999999999999889999999999877652 22222
Q ss_pred -ccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 137 -AKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 137 -~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
...+|++++|+|+++ ......+...+...++|+++|+||+|+.+.... .....+.. .++ +|++++||+
T Consensus 82 ~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~------~lg--~~~i~~SA~ 151 (274)
T 3i8s_A 82 LSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSA------RLG--CPVIPLVST 151 (274)
T ss_dssp HHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHH------HHT--SCEEECCCG
T ss_pred hhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHH------hcC--CCEEEEEcC
Confidence 278999999999997 445556666777789999999999998542110 01111111 122 589999999
Q ss_pred CCCChhHHHHHHH
Q psy1758 215 TGVGINKLLENIS 227 (1527)
Q Consensus 215 tg~gI~eL~~~l~ 227 (1527)
+|.|+++|++.|.
T Consensus 152 ~g~gi~el~~~i~ 164 (274)
T 3i8s_A 152 RGRGIEALKLAID 164 (274)
T ss_dssp GGHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 9999999999885
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8.4e-18 Score=183.30 Aligned_cols=156 Identities=19% Similarity=0.220 Sum_probs=112.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+.....+++..+.. ..+..++. .+.||||||++.|..++..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 45679999999999999999999998876666665555443 34555555 5689999999999999999999999999
Q ss_pred EEEeCCCCCcHHHH--HHHHHHHH--cCCCEEEEEEcccCCcchhH----HHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 145 LVVAADDGVMPQTR--EAIAHAKI--SGVPLIVAINKIDKLDINLD----RIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 145 lVvda~~g~~~qt~--e~i~~~~~--~~vpiIvviNKiDl~~~~~~----~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
+|+|+++....... .++..+.. .++|+++|+||+|+.+.... .....+.. .++ ..+++++||++|
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~Sa~~~ 172 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQ------KLG-CVAYIEASSVAK 172 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHH------HHT-CSCEEECBTTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHH------hcC-CCEEEEeecCCC
Confidence 99999984332221 12222222 36899999999999753111 11111111 111 123999999999
Q ss_pred CChhHHHHHHHHHH
Q psy1758 217 VGINKLLENISLQA 230 (1527)
Q Consensus 217 ~gI~eL~~~l~~~~ 230 (1527)
.||+++|+.|....
T Consensus 173 ~gi~~l~~~l~~~i 186 (194)
T 3reg_A 173 IGLNEVFEKSVDCI 186 (194)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999997553
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=177.07 Aligned_cols=151 Identities=20% Similarity=0.176 Sum_probs=88.6
Q ss_pred CCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
..+|+++|++|+|||||+++|.+... .....++.+.. ..+..++. .+.+|||||++.|..++..+++.+|++++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI 78 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC---------------CCEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence 46899999999999999999987665 33344455543 22334443 78899999999999999999999999999
Q ss_pred EEeCCCCCcHHH-HHHHHHHH----HcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 146 VVAADDGVMPQT-REAIAHAK----ISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 146 Vvda~~g~~~qt-~e~i~~~~----~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
|+|+++....+. ..++..+. ..++|+++|+||+|+.+.... .....+.. .+ .++++++||++|.|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~g 150 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV------VF--DCKFIETSAALHHN 150 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHH------HT--TCEEEECBGGGTBS
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHH------Hh--CCcEEEeccCCCCC
Confidence 999998432222 22223332 247899999999999753211 11111111 11 25899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
++++|++|....
T Consensus 151 i~~l~~~l~~~~ 162 (166)
T 3q72_A 151 VQALFEGVVRQI 162 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997653
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=203.51 Aligned_cols=153 Identities=20% Similarity=0.301 Sum_probs=112.9
Q ss_pred CEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhh---------HHHHHHhhccc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA---------FTAMRARGAKV 139 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~---------f~~~~~~~~~~ 139 (1527)
|+|+++|++|||||||+|+|.+... .++..+|+|++.....+.+++..+.+|||||++. +...+..+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 6899999999999999999998875 4678899999999999999999999999999653 55667788999
Q ss_pred cCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 140 TDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 140 aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
||++++|+|++++......+....++..++|+++|+||+|+.... ...... ... .++ ..+++++||++|.|+
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~----~~~~~~-~~~--~lg-~~~~~~iSA~~g~gv 153 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREF----EREVKP-ELY--SLG-FGEPIPVSAEHNINL 153 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHH----HHHTHH-HHG--GGS-SCSCEECBTTTTBSH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc----HHHHHH-HHH--hcC-CCCEEEEeccCCCCH
Confidence 999999999999988877777777777899999999999985320 111100 111 122 226899999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
++|++.+....
T Consensus 154 ~~L~~~i~~~l 164 (439)
T 1mky_A 154 DTMLETIIKKL 164 (439)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999997543
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=178.45 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=110.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+..+|+++|++|+|||||+++|.+..+ ....+++. .....+.+++..+.+|||||++.|...+..+++.+|++++|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG--FNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFV 92 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT--CCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc--cceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 4568999999999999999999997776 22223222 22345566788999999999999998889999999999999
Q ss_pred EeCCCCCcHH-HHHHHHHHH----HcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQ-TREAIAHAK----ISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~q-t~e~i~~~~----~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++....+ ..+.+..+. ..++|+++|+||+|+.+.. ..+....+.... .....++++++||++|.|++
T Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 93 VDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVE----LKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTT----CCSSCEEEEEEBGGGTBTHH
T ss_pred EECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCccc----ccCCceEEEEccCCCCcCHH
Confidence 9999864332 333344333 3578999999999997642 222222221110 11123589999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
+++++|....
T Consensus 169 ~l~~~l~~~~ 178 (183)
T 1moz_A 169 EGLDWLIDVI 178 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999997553
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=181.81 Aligned_cols=155 Identities=16% Similarity=0.161 Sum_probs=113.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....++++.+.....+...+ ..+.||||||++.|..++..+++.+|++++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 100 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLL 100 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEE
Confidence 457899999999999999999999887655555555555444455544 478999999999999999999999999999
Q ss_pred EEeCCCCCcHHH-HHHHHHHHH---cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQT-REAIAHAKI---SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt-~e~i~~~~~---~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+. ..++..+.. .+.|+++|+||+|+.+... ......+.. .++ ++++++||++|.|+
T Consensus 101 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~--~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 101 MYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLAD------DLG--FEFFEASAKENINV 172 (189)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HHT--CEEEECBTTTTBSH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHH------HcC--CeEEEEECCCCCCH
Confidence 999988432222 222333333 4789999999999965321 111111111 121 48999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
++++++|....
T Consensus 173 ~~l~~~l~~~i 183 (189)
T 2gf9_A 173 KQVFERLVDVI 183 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999997543
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=184.21 Aligned_cols=156 Identities=18% Similarity=0.168 Sum_probs=114.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC------------CeEEEEEeCCChhhHHHHHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN------------HGSITFLDTPGHEAFTAMRA 134 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~------------~~~i~~iDTPG~e~f~~~~~ 134 (1527)
.+.++|+++|++|+|||||+++|.+..+.....++++.++....+.++ ...+.||||||++.|...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 345789999999999999999999988766666666666655555544 35799999999999999999
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHH-HHHHH----cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCc
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAI-AHAKI----SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASP 207 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i-~~~~~----~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~ 207 (1527)
.+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.+... ......+.. .+ .++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~------~~--~~~ 174 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD------KY--GIP 174 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH------HT--TCC
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHH------HC--CCc
Confidence 999999999999999984333222222 22221 4689999999999965211 111111111 11 258
Q ss_pred EEEeeccCCCChhHHHHHHHHHH
Q psy1758 208 FISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 208 v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
++++||++|.||++++++|....
T Consensus 175 ~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 175 YFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998543
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.9e-18 Score=187.61 Aligned_cols=176 Identities=17% Similarity=0.097 Sum_probs=124.0
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEE-ecCeEEEEEeCCCCC
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE-YNGTRINIIDTPGHA 996 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~-~~~~~iniiDTPGh~ 996 (1527)
+....++|+++|++|+|||||+++|+..... .......|+|.......+. +++..++||||||+.
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 90 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRL--------------AFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYG 90 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSS--------------SCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCC
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcc--------------eeecCCCCcccceEEEEecCCCCCcEEEEcCCCCC
Confidence 3345679999999999999999999865310 0122334666666555555 567899999999975
Q ss_pred Cc----------hHHHHHHHHh---cCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHHHH
Q psy1758 997 DF----------GGEVERILSM---VDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATF 1062 (1527)
Q Consensus 997 df----------~~ev~~~l~~---aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~~~ 1062 (1527)
+. ...+..+++. +|++++|+|++++.......++..+...++|+++|+||+|+...+ .....+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~ 170 (223)
T 4dhe_A 91 YAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQ 170 (223)
T ss_dssp SSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred cccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHH
Confidence 42 4444455555 788999999999888888888888888899999999999997532 222344444
Q ss_pred HHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCC
Q psy1758 1063 DLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN 1117 (1527)
Q Consensus 1063 ~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~ 1117 (1527)
+.+............|++++||++|. |+++|++.|.+.++.+...
T Consensus 171 ~~l~~~~~~~~~~~~~~~~~SA~~g~----------gv~~l~~~l~~~~~~~~~~ 215 (223)
T 4dhe_A 171 KSLDAYRDAGYAGKLTVQLFSALKRT----------GLDDAHALIESWLRPAAAD 215 (223)
T ss_dssp HHHHHHHHHTCCSCEEEEEEBTTTTB----------SHHHHHHHHHHHHC-----
T ss_pred HHHHhhhhcccCCCCeEEEeecCCCc----------CHHHHHHHHHHhcCccCCc
Confidence 43332210001234689999999998 9999999999999877543
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=180.64 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=110.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCC--ceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAG--GITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~--giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+.....+ +.+.......+......+.||||||++.|..++..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 3457899999999999999999998886544444 44443333333334458999999999999999999999999999
Q ss_pred EEEeCCCCCcHHHH-HHHHHHHH---cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 145 LVVAADDGVMPQTR-EAIAHAKI---SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 145 lVvda~~g~~~qt~-e~i~~~~~---~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|+|+++....+.. .++..+.. .++|+++|+||+|+.+... .+....+.. .+ .++++++||++|.|
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~~~Sa~~~~g 172 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAE------SI--GAIVVETSAKNAIN 172 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------TT--TCEEEECBTTTTBS
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHH------Hc--CCEEEEEeCCCCcC
Confidence 99999985433222 22233332 3789999999999964211 111111111 12 25899999999999
Q ss_pred hhHHHHHHHHH
Q psy1758 219 INKLLENISLQ 229 (1527)
Q Consensus 219 I~eL~~~l~~~ 229 (1527)
++++++.|...
T Consensus 173 i~~l~~~l~~~ 183 (192)
T 2fg5_A 173 IEELFQGISRQ 183 (192)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999999743
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=184.23 Aligned_cols=164 Identities=16% Similarity=0.152 Sum_probs=111.8
Q ss_pred cccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCE
Q psy1758 65 SLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDI 142 (1527)
Q Consensus 65 ~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~ 142 (1527)
...+..+|+++|++|+|||||+++|.+..+.....+++..+.. ..+..++ ..+.||||||++.|..++..+++.+|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 3456789999999999999999999998887666666655543 3333333 478999999999999999999999999
Q ss_pred EEEEEeCCCCCcHHH--HHHHHHHHH--cCCCEEEEEEcccCCcchhHHHH-HH-----H--hhhcccccccCCCCcEEE
Q psy1758 143 VVLVVAADDGVMPQT--REAIAHAKI--SGVPLIVAINKIDKLDINLDRIK-QD-----L--ISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 143 ~IlVvda~~g~~~qt--~e~i~~~~~--~~vpiIvviNKiDl~~~~~~~~~-~~-----l--~~~~~~~~~~~~~~~v~~ 210 (1527)
+|+|+|+++...... ..++..+.. .++|+++|+||+|+.+....... .. . .........+ +..++++
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e 180 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL-GAEIYLE 180 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH-TCSEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc-CCCEEEE
Confidence 999999998543222 122233333 37899999999999753110000 00 0 0000011112 1238999
Q ss_pred eeccCCCC-hhHHHHHHHHHH
Q psy1758 211 ISAKTGVG-INKLLENISLQA 230 (1527)
Q Consensus 211 iSAktg~g-I~eL~~~l~~~~ 230 (1527)
+||++|.| |+++|+.+....
T Consensus 181 ~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 181 GSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp CCTTTCHHHHHHHHHHHHHHH
T ss_pred eccCCCcccHHHHHHHHHHHH
Confidence 99999998 999999998654
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-17 Score=179.46 Aligned_cols=155 Identities=20% Similarity=0.195 Sum_probs=114.9
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+.++|+++|++|+|||||+++|.+..+.....++++.+.....+..++ ..+.||||||++.|..++..+++.+|++++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 457899999999999999999999887666666666666555555555 478999999999999999999999999999
Q ss_pred EEeCCCCCcHHHHH-HHHHHHH----cCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQTRE-AIAHAKI----SGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt~e-~i~~~~~----~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+... ++..+.. .++|+++|+||+|+...... .....+.. .+ .++++++||++|.|+
T Consensus 94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR------KH--SMLFIEASAKTCDGV 165 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH------HT--TCEEEECCTTTCTTH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH------Hc--CCEEEEecCCCCCCH
Confidence 99999843322222 2233332 36889999999999543211 11111111 11 258999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
++++++|....
T Consensus 166 ~~l~~~l~~~~ 176 (195)
T 1x3s_A 166 QCAFEELVEKI 176 (195)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999997654
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.2e-18 Score=183.48 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=111.8
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCce--eEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGI--TQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~gi--T~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
...++|+++|++|+|||||+++|.+..+.....+++ +.......+...+..+.||||||++.|..++..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 356789999999999999999999887654444333 333333434445568999999999999999999999999999
Q ss_pred EEEeCCCCCc----HHHHHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 145 LVVAADDGVM----PQTREAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 145 lVvda~~g~~----~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|+|+++... ..|.+.+......++|+++|+||+|+.+.... .....+.. .+ .++++++||++|.|
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~g 172 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAE------QL--GFDFFEASAKENIS 172 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HH--TCEEEECBTTTTBS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH------Hc--CCeEEEEECCCCCC
Confidence 9999998332 12222222222257899999999998653211 11111111 11 24899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
++++|+.|....
T Consensus 173 i~~l~~~l~~~i 184 (191)
T 3dz8_A 173 VRQAFERLVDAI 184 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997543
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-17 Score=176.01 Aligned_cols=154 Identities=21% Similarity=0.229 Sum_probs=111.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+.....+++.... ...+..++. .+.||||||++.|..++..+++.+|+++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 3557899999999999999999998887555544444333 344455554 7899999999999999999999999999
Q ss_pred EEEeCCCCCcHH----HHHHHH-HHHHcCCCEEEEEEcccCCcchh---HHHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 145 LVVAADDGVMPQ----TREAIA-HAKISGVPLIVAINKIDKLDINL---DRIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 145 lVvda~~g~~~q----t~e~i~-~~~~~~vpiIvviNKiDl~~~~~---~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
+|+|+++....+ |...+. .....++|+++|+||+|+.+... .+.. .+. ..+ .++++++||++|
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~------~~~--~~~~~~~Sa~~~ 165 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAK-NRA------EQW--NVNYVETSAKTR 165 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHH-HHH------HHT--TCEEEECCTTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHH-HHH------HHc--CCeEEEeCCCCC
Confidence 999999733211 112221 12223789999999999865321 1111 111 112 258999999999
Q ss_pred CChhHHHHHHHHHH
Q psy1758 217 VGINKLLENISLQA 230 (1527)
Q Consensus 217 ~gI~eL~~~l~~~~ 230 (1527)
.|+++++++|....
T Consensus 166 ~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 166 ANVDKVFFDLMREI 179 (187)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998654
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-17 Score=178.41 Aligned_cols=160 Identities=18% Similarity=0.192 Sum_probs=110.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+...+.+++.... ...+..++. .+.||||||++.|..++..+++.+|++++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 457899999999999999999998877555444433222 334455554 57799999999999999999999999999
Q ss_pred EEeCCCCCcHHHHH--HHHHHHHc--CCCEEEEEEcccCCcchhHH-HHHHHh-------hhcccccccCCCCcEEEeec
Q psy1758 146 VVAADDGVMPQTRE--AIAHAKIS--GVPLIVAINKIDKLDINLDR-IKQDLI-------SEQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 146 Vvda~~g~~~qt~e--~i~~~~~~--~vpiIvviNKiDl~~~~~~~-~~~~l~-------~~~~~~~~~~~~~~v~~iSA 213 (1527)
|+|+++....+... ++..+... ++|+++|+||+|+.+..... ...... ........+ +..+++++||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa 161 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-GAVKYLECSA 161 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT-TCSEEEECCT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhc-CCcEEEEecC
Confidence 99999844332221 23333332 89999999999997532110 000000 000001111 2248999999
Q ss_pred cCCCChhHHHHHHHHH
Q psy1758 214 KTGVGINKLLENISLQ 229 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~ 229 (1527)
++|.|++++++.|...
T Consensus 162 ~~g~gi~~l~~~l~~~ 177 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRA 177 (186)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHH
Confidence 9999999999999754
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=180.48 Aligned_cols=154 Identities=20% Similarity=0.250 Sum_probs=118.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH------HHHHhhcc--
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT------AMRARGAK-- 138 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~------~~~~~~~~-- 138 (1527)
.+.++|+++|++|+|||||+++|.+..+..+..+++|.+.....+.+++..+.+|||||++.|. .++..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 3567899999999999999999999888778888999888888888889999999999998773 34445553
Q ss_pred ccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 139 VTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 139 ~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
.+|++++|+|+++ ......++..+...+.|+++|+||+|+..... ......+.. .+ .++++++||++|.
T Consensus 85 ~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~ 154 (188)
T 2wjg_A 85 KPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEK------IL--GVKVVPLSAAKKM 154 (188)
T ss_dssp CCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHH------HH--TSCEEECBGGGTB
T ss_pred CCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHH------Hh--CCCeEEEEecCCC
Confidence 4899999999986 33444555566667899999999999854211 001111111 11 2589999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
|++++++.+....
T Consensus 155 ~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 155 GIEELKKAISIAV 167 (188)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999997553
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.6e-17 Score=176.69 Aligned_cols=154 Identities=23% Similarity=0.271 Sum_probs=108.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....+++ .+.....+..++. .+.||||||++.|..++..+++.+|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTC-CEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-hheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 35689999999999999999999887755544443 3444455556665 47789999999999999999999999999
Q ss_pred EEeCCCCCcHHHH-HHHHHH----HHcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQTR-EAIAHA----KISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt~-e~i~~~----~~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+.. .++..+ ...++|+++|+||+|+.+... ......+.. .+ .++++++||++|.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~g~gi 153 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR------SY--GIPFIETSAKTRQGV 153 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH------HH--TCCEEECCTTTCTTH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH------Hc--CCeEEEEeCCCCCCH
Confidence 9999984322221 122222 234789999999999975321 111222221 11 248999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
++++++|....
T Consensus 154 ~~l~~~l~~~~ 164 (189)
T 4dsu_A 154 DDAFYTLVREI 164 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998654
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-17 Score=173.38 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=106.8
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++|+|||||+++|.+..+.....+++...... .+..++ ..+.||||||++.|..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ-VISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE-EEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEE-EEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 4689999999999999999999887755544444433322 233343 3789999999999999999999999999999
Q ss_pred EeCCCCCcHH-HHHHHHHHHH-----cCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 147 VAADDGVMPQ-TREAIAHAKI-----SGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 147 vda~~g~~~q-t~e~i~~~~~-----~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|+++....+ ...++..+.. .++|+++|+||+|+.+.... .....+. ..+ .++++++||++|.|
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~------~~~--~~~~~~~Sa~~~~g 153 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA------RTW--KCAFMETSAKLNHN 153 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHH------HHH--TCEEEECBTTTTBS
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHH------HHh--CCeEEEecCCCCcC
Confidence 9999733211 1222222222 47899999999998653211 1111111 112 25899999999999
Q ss_pred hhHHHHHHHH
Q psy1758 219 INKLLENISL 228 (1527)
Q Consensus 219 I~eL~~~l~~ 228 (1527)
+++++++|..
T Consensus 154 i~~l~~~l~~ 163 (172)
T 2erx_A 154 VKELFQELLN 163 (172)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999964
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-17 Score=180.18 Aligned_cols=156 Identities=20% Similarity=0.162 Sum_probs=113.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
+.++|+++|++|+|||||+++|....+.. ..+++. .....+.+++..+.+|||||++.|..++..+++.+|++++|+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 97 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVV 97 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEE
Confidence 56889999999999999999998777643 333322 334456667889999999999999888888999999999999
Q ss_pred eCCCCCcHH-HHHHHHHHHH----cCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQ-TREAIAHAKI----SGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~q-t~e~i~~~~~----~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++....+ ..+.+..+.. .+.|+++|+||+|+.+... .++...+..... ....++++++||++|.|+++
T Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 173 (189)
T 2x77_A 98 DSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSI----MNRTWTIVKSSSKTGDGLVE 173 (189)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC----CSSCEEEEECCTTTCTTHHH
T ss_pred eCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhc----cCCceEEEEccCCCccCHHH
Confidence 999864332 2333333322 4789999999999976422 222222211111 11235899999999999999
Q ss_pred HHHHHHHHH
Q psy1758 222 LLENISLQA 230 (1527)
Q Consensus 222 L~~~l~~~~ 230 (1527)
++++|....
T Consensus 174 l~~~l~~~i 182 (189)
T 2x77_A 174 GMDWLVERL 182 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999997553
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-17 Score=180.92 Aligned_cols=159 Identities=21% Similarity=0.249 Sum_probs=112.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
....+|+++|++|+|||||+++|.+..+.....++++.+... .+..++. .+.||||||++.|..++..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 345789999999999999999999988766666665554432 3455554 7899999999999999999999999999
Q ss_pred EEEeCCCCCcHHHH--HHHHHHHHc--CCCEEEEEEcccCCcchhHHHHHHHhh---h-------cccccccCCCCcEEE
Q psy1758 145 LVVAADDGVMPQTR--EAIAHAKIS--GVPLIVAINKIDKLDINLDRIKQDLIS---E-------QVIPEEYGGASPFIS 210 (1527)
Q Consensus 145 lVvda~~g~~~qt~--e~i~~~~~~--~vpiIvviNKiDl~~~~~~~~~~~l~~---~-------~~~~~~~~~~~~v~~ 210 (1527)
+|+|+++....+.. .++..+... ++|+++|+||+|+....... ..+.. . ......+ +..++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~ 178 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTR--RELAKMKQEPVRSEEGRDMANRI-SAFGYLE 178 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHH--HHHHTTTCCCCCHHHHHHHHHHT-TCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccch--hhhcccccCcCCHHHHHHHHHhC-CCcEEEE
Confidence 99999984322221 222333333 89999999999997642211 11100 0 0000111 2248999
Q ss_pred eeccCCCChhHHHHHHHHH
Q psy1758 211 ISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 211 iSAktg~gI~eL~~~l~~~ 229 (1527)
+||++|.|++++++.|...
T Consensus 179 ~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 179 CSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999754
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.2e-17 Score=176.26 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=112.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+.++|+++|++|+|||||+++|.+..+.....+++.... ...+.+++. .+.||||||++.|..++..+++.+|+++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 4567999999999999999999998887555554444333 344556664 7889999999999999999999999999
Q ss_pred EEEeCCCCCcHHHH-HHHHHHH----HcCCCEEEEEEcccCCcchh---HHHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 145 LVVAADDGVMPQTR-EAIAHAK----ISGVPLIVAINKIDKLDINL---DRIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 145 lVvda~~g~~~qt~-e~i~~~~----~~~vpiIvviNKiDl~~~~~---~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
+|+|+++....... .++..+. ..++|+++|+||+|+.+... .+... +. ..++ ++++++||++|
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~------~~~~--~~~~~~Sa~~g 161 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-RA------EQWN--VNYVETSAKTR 161 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHH-HH------HHHT--CEEEEECTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHH-HH------HHhC--CeEEEEeCCCC
Confidence 99999984322221 1222222 23789999999999965321 11111 11 1122 48999999999
Q ss_pred CChhHHHHHHHHHH
Q psy1758 217 VGINKLLENISLQA 230 (1527)
Q Consensus 217 ~gI~eL~~~l~~~~ 230 (1527)
.|++++|++|....
T Consensus 162 ~gi~~l~~~l~~~i 175 (206)
T 2bov_A 162 ANVDKVFFDLMREI 175 (206)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998654
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-17 Score=180.57 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=110.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHH-HHHhhccccCEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTA-MRARGAKVTDIVV 144 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~-~~~~~~~~aD~~I 144 (1527)
..++|+++|++|+|||||+++|.+......+.++++.+.....+.+++. .+.+|||||++.|.. ++..+++.+|+++
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~i 101 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFL 101 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEE
Confidence 4578999999999999999999765554445556666555556666665 678899999988765 7777889999999
Q ss_pred EEEeCCCCCcHHH-HHHHHHHHH----cCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 145 LVVAADDGVMPQT-REAIAHAKI----SGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 145 lVvda~~g~~~qt-~e~i~~~~~----~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+|+|+++....+. ..++..+.. .++|+++|+||+|+.+.... +....+. ..+ .++++++||++|.
T Consensus 102 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a------~~~--~~~~~e~Sa~~~~ 173 (195)
T 3cbq_A 102 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA------GTL--SCKHIETSAALHH 173 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHH------HHT--TCEEEEEBTTTTB
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHH------HHh--CCEEEEEcCCCCC
Confidence 9999998332111 122222222 47899999999999753211 1111111 112 2589999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
|++++|+.|....
T Consensus 174 ~v~~lf~~l~~~i 186 (195)
T 3cbq_A 174 NTRELFEGAVRQI 186 (195)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999997553
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-17 Score=177.78 Aligned_cols=158 Identities=21% Similarity=0.230 Sum_probs=111.5
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.....+++.... ...+..++ ..+.||||||+++|..++..+++.+|++++
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 447899999999999999999998877655554443332 33455555 478899999999999999999999999999
Q ss_pred EEeCCCCCcHHHH--HHHHHHHHc--CCCEEEEEEcccCCcchhHHHHHHHhh----------hcccccccCCCCcEEEe
Q psy1758 146 VVAADDGVMPQTR--EAIAHAKIS--GVPLIVAINKIDKLDINLDRIKQDLIS----------EQVIPEEYGGASPFISI 211 (1527)
Q Consensus 146 Vvda~~g~~~qt~--e~i~~~~~~--~vpiIvviNKiDl~~~~~~~~~~~l~~----------~~~~~~~~~~~~~v~~i 211 (1527)
|+|+++....+.. .++..+... ++|+++|+||+|+.+.... ...+.. .......+ +..+++++
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~ 172 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKT--LARLNDMKEKPICVEQGQKLAKEI-GACCYVEC 172 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHH--HHHHTTTTCCCCCHHHHHHHHHHH-TCSCEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccc--hhhcccccCcccCHHHHHHHHHHc-CCcEEEEe
Confidence 9999984332222 223333333 8999999999999763211 000000 00001111 22489999
Q ss_pred eccCCCChhHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~ 229 (1527)
||++|.||+++|+.|...
T Consensus 173 Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 173 SALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999999999999999754
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-17 Score=191.16 Aligned_cols=153 Identities=20% Similarity=0.204 Sum_probs=121.0
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH------HHHhhc--cc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA------MRARGA--KV 139 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~------~~~~~~--~~ 139 (1527)
+.++|+++|++|+|||||+++|++..+..+..+++|.+.....+.+++..+.+|||||+..|.. ....++ ..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 4578999999999999999999999888889999999999999999999999999999887654 344444 68
Q ss_pred cCEEEEEEeCCCCCcHHHHHHHHHHHHcC-CCEEEEEEcccCCcchhHH-HHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 140 TDIVVLVVAADDGVMPQTREAIAHAKISG-VPLIVAINKIDKLDINLDR-IKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 140 aD~~IlVvda~~g~~~qt~e~i~~~~~~~-vpiIvviNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+|++++|+|+++. .+....+..+...+ .|+++|+||+|+.+..... ....+.. .+ .+|++++||++|.
T Consensus 82 ~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~------~l--g~~~~~~Sa~~g~ 151 (271)
T 3k53_A 82 ADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRK------EL--GVPVIPTNAKKGE 151 (271)
T ss_dssp CSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHH------HH--SSCEEECBGGGTB
T ss_pred CcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHH------Hc--CCcEEEEEeCCCC
Confidence 9999999999984 45556666666777 9999999999975421100 0111111 12 2589999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
|++++++.+....
T Consensus 152 gi~~l~~~i~~~~ 164 (271)
T 3k53_A 152 GVEELKRMIALMA 164 (271)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999997653
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-17 Score=178.49 Aligned_cols=151 Identities=17% Similarity=0.199 Sum_probs=106.8
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEE
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~ 143 (1527)
..+..+|+++|++|+|||||+++|....+.....++.. +. ...+.+++. .+.||||||++.|. +++.+|++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 35667999999999999999999999887655554422 22 355666665 56779999999987 66789999
Q ss_pred EEEEeCCCCCcHHH-HHHHHHHHH----cCCCEEEEEEcccCCcchhH----HHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 144 VLVVAADDGVMPQT-REAIAHAKI----SGVPLIVAINKIDKLDINLD----RIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 144 IlVvda~~g~~~qt-~e~i~~~~~----~~vpiIvviNKiDl~~~~~~----~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
++|+|+++....+. ..++..+.. .++|+++|+||+|+...+.. .....+.. .+ +.++++++||+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~------~~-~~~~~~e~Sa~ 162 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLST------DL-KRCTYYETCAT 162 (184)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHH------HT-TTCEEEEEBTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHH------Hc-CCCeEEEecCC
Confidence 99999998443333 223333332 46899999999998531111 11111111 11 23589999999
Q ss_pred CCCChhHHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQA 230 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~~ 230 (1527)
+|.||+++|++|....
T Consensus 163 ~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 163 YGLNVERVFQDVAQKV 178 (184)
T ss_dssp TTBTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999997643
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-17 Score=185.60 Aligned_cols=154 Identities=15% Similarity=0.140 Sum_probs=108.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+.++|+++|++|+|||||+++|.+..+.....++++.+.....+.+++ ..+.||||||++.|..++..+++.+|++|+
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vil 91 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALI 91 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEE
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEE
Confidence 457899999999999999999999888766666666666666666776 478999999999999999999999999999
Q ss_pred EEeCCCCCcHHHH-HHHHHHH---HcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQTR-EAIAHAK---ISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt~-e~i~~~~---~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+.. .++..+. ..++|+++|+||+|+..... ......+.. .+ .++++++||++|.||
T Consensus 92 V~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~~~Sa~~~~gi 163 (223)
T 3cpj_B 92 VYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ------EN--QLLFTETSALNSENV 163 (223)
T ss_dssp EEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHH------HT--TCEEEECCCC-CCCH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHH------Hc--CCEEEEEeCCCCCCH
Confidence 9999985433222 2222333 23789999999999965211 111111111 11 258999999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
+++|++|...
T Consensus 164 ~~l~~~l~~~ 173 (223)
T 3cpj_B 164 DKAFEELINT 173 (223)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999754
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-17 Score=185.84 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=111.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC---eEEEEEeCCChhhHHHHHHhhccccCEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH---GSITFLDTPGHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~---~~i~~iDTPG~e~f~~~~~~~~~~aD~~ 143 (1527)
....+|+++|++|+|||||+++|.+..+.....++++.......+...+ ..+.||||||++.|..++..++..+|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 3457899999999999999999998776554444444444343333332 4799999999999998888899999999
Q ss_pred EEEEeCCCCCcHH----HHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 144 VLVVAADDGVMPQ----TREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 144 IlVvda~~g~~~q----t~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+|++++...+ |...+......++|+++|+||+|+.+..... ....... .. ...++++++||++|.|+
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~--~~--~~~~~~~~~Sa~~g~gv 162 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKIS--KKLVMEV--LK--GKNYEYFEISAKTAHNF 162 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CC--HHHHHHH--TT--TCCCEEEEEBTTTTBTT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC--HHHHHHH--HH--HcCCcEEEEecCCCCCH
Confidence 9999999854333 3333444444578999999999997531110 1111010 11 12358999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
+++++.|....
T Consensus 163 ~~l~~~l~~~~ 173 (218)
T 4djt_A 163 GLPFLHLARIF 173 (218)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998654
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=174.94 Aligned_cols=154 Identities=20% Similarity=0.261 Sum_probs=110.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+.++|+++|++|+|||||+++|.+..+.....+++..... ..+..++ ..+.||||||++.|..++..+++.+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 35578999999999999999999988776555554443332 2233444 37899999999999999999999999999
Q ss_pred EEEeCCCCCc----HHHHHHHHHHH--HcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 145 LVVAADDGVM----PQTREAIAHAK--ISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 145 lVvda~~g~~----~qt~e~i~~~~--~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+|+|+++... ..+...+.... ..++|+++|+||+|+...... .....+. ..++ ++++++||++|.
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------~~~~--~~~~~~Sa~~~~ 156 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVA------QEWK--CAFMETSAKMNY 156 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHH------HHHT--CEEEECBTTTTB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHH------HHhC--CeEEEEecCCCC
Confidence 9999997322 12223333332 247899999999999753211 1111111 1122 489999999999
Q ss_pred ChhHHHHHHHHH
Q psy1758 218 GINKLLENISLQ 229 (1527)
Q Consensus 218 gI~eL~~~l~~~ 229 (1527)
|+++++++|...
T Consensus 157 gi~~l~~~l~~~ 168 (199)
T 2gf0_A 157 NVKELFQELLTL 168 (199)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999754
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-17 Score=181.34 Aligned_cols=162 Identities=18% Similarity=0.144 Sum_probs=93.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+.....+++.... ...+..++. .+.||||||++.|..++..+++.+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4568999999999999999999998877655555443333 334455554 7889999999999999999999999999
Q ss_pred EEEeCCCCCcHHHH--HHHHHHHH--cCCCEEEEEEcccCCcchhHHH-HHHHh-------hhcccccccCCCCcEEEee
Q psy1758 145 LVVAADDGVMPQTR--EAIAHAKI--SGVPLIVAINKIDKLDINLDRI-KQDLI-------SEQVIPEEYGGASPFISIS 212 (1527)
Q Consensus 145 lVvda~~g~~~qt~--e~i~~~~~--~~vpiIvviNKiDl~~~~~~~~-~~~l~-------~~~~~~~~~~~~~~v~~iS 212 (1527)
+|+|+++....+.. .++..+.. .++|+++|+||+|+........ ..... +.......+ +..+++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSV-GAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHT-TCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhc-CCCEEEEec
Confidence 99999984322222 12222222 3789999999999976432110 00000 000011111 224899999
Q ss_pred ccCCCChhHHHHHHHHHH
Q psy1758 213 AKTGVGINKLLENISLQA 230 (1527)
Q Consensus 213 Aktg~gI~eL~~~l~~~~ 230 (1527)
|++|.||+++|+.|....
T Consensus 190 A~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999997654
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-17 Score=178.19 Aligned_cols=158 Identities=20% Similarity=0.199 Sum_probs=101.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|....+.....+++.... ...+..++ ..+.||||||++.|..++..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 3568999999999999999999998876554444333222 11222233 35779999999999999999999999999
Q ss_pred EEEeCCCCCcHHHHH--HHHHHHH--cCCCEEEEEEcccCCcchhHH---------HHHHHhhhcccccccCCCCcEEEe
Q psy1758 145 LVVAADDGVMPQTRE--AIAHAKI--SGVPLIVAINKIDKLDINLDR---------IKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 145 lVvda~~g~~~qt~e--~i~~~~~--~~vpiIvviNKiDl~~~~~~~---------~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
+|+|+++....+... ++..+.. .++|+++|+||+|+.+..... ...+.. .....+ +..+++++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~---~~~~~~-~~~~~~~~ 160 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE---ELKKLI-GAPAYIEC 160 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHH---HHHHHH-TCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHH---HHHHHc-CCCEEEEE
Confidence 999999843322221 2223332 378999999999986532210 000000 011111 22489999
Q ss_pred eccCCCChhHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~ 229 (1527)
||++|.|++++|+.|...
T Consensus 161 Sa~~~~gi~~l~~~l~~~ 178 (182)
T 3bwd_D 161 SSKSQENVKGVFDAAIRV 178 (182)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999999999754
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-17 Score=205.32 Aligned_cols=154 Identities=18% Similarity=0.226 Sum_probs=99.7
Q ss_pred cccCCCEEEEEecCCCChhHHHHHHHccc-cccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHH--------Hh
Q psy1758 65 SLVRAPIVTIMGHVDHGKTSLLDYIRKTN-VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMR--------AR 135 (1527)
Q Consensus 65 ~~~r~~~V~IvG~~~~GKTSLl~~L~~~~-~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~--------~~ 135 (1527)
....+++|+++|++|+|||||+|+|.+.. ...+..+|+|++.....+.+++.+++||||||++.+.... ..
T Consensus 229 ~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 229 IVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp HHHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------C
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 34557889999999999999999999876 4677889999999999999999999999999998776443 34
Q ss_pred hccccCEEEEEEeCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEe
Q psy1758 136 GAKVTDIVVLVVAADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 136 ~~~~aD~~IlVvda~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
+++.+|++++|+|++++... ++.+++..+. ++|+++|+||+|+........ ..+... +..+++++
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~-~~l~~~--------~~~~~i~v 377 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI-RAIADG--------TGTEVIGI 377 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH-HHHHHH--------HTSCEEEC
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH-HHHHhc--------CCCceEEE
Confidence 67899999999999998766 4444444443 789999999999976543221 112211 11589999
Q ss_pred eccCCCChhHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~ 229 (1527)
||++|.|+++|+++|...
T Consensus 378 SAktg~GI~eL~~~i~~~ 395 (476)
T 3gee_A 378 SALNGDGIDTLKQHMGDL 395 (476)
T ss_dssp BTTTTBSHHHHHHHHTHH
T ss_pred EECCCCCHHHHHHHHHHH
Confidence 999999999999999754
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.9e-17 Score=179.44 Aligned_cols=160 Identities=20% Similarity=0.233 Sum_probs=107.9
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+.++|+++|++|+|||||+++|.+..+.....++++.+... .+..++. .+.||||||++.|..++..+++.+|++++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 45689999999999999999999988765555555444432 3455553 78899999999999999999999999999
Q ss_pred EEeCCCCCcHHHH--HHHHHHHH--cCCCEEEEEEcccCCcchhH-HHHHHHhhhcc-------cccccCCCCcEEEeec
Q psy1758 146 VVAADDGVMPQTR--EAIAHAKI--SGVPLIVAINKIDKLDINLD-RIKQDLISEQV-------IPEEYGGASPFISISA 213 (1527)
Q Consensus 146 Vvda~~g~~~qt~--e~i~~~~~--~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~-------~~~~~~~~~~v~~iSA 213 (1527)
|+|+++....+.. .++..+.. .++|+++|+||+|+...... +....+..... .... .+..+++++||
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~SA 181 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVR-IQAYDYLECSA 181 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHH-TTCSEEEECCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHh-cCCCEEEEeeC
Confidence 9999984322221 22233333 38999999999999764211 11111100000 0011 12238999999
Q ss_pred cCCCChhHHHHHHHHH
Q psy1758 214 KTGVGINKLLENISLQ 229 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~ 229 (1527)
++|.|+++++++|...
T Consensus 182 ~~g~gi~el~~~l~~~ 197 (207)
T 2fv8_A 182 KTKEGVREVFETATRA 197 (207)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999999754
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-17 Score=183.36 Aligned_cols=156 Identities=19% Similarity=0.136 Sum_probs=110.4
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEE--eCCeEEEEEeCCChhhHHHHHHhhccccCEE
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVV--TNHGSITFLDTPGHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~--~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~ 143 (1527)
..+.++|+++|++|+|||||+++|.+..+.....++++... ...+. .....+.||||||++.|..++..+++.+|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 34678999999999999999999999887766555554443 33333 3445789999999999999999999999999
Q ss_pred EEEEeCCCCCcHHHHH-HHHHH----HHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 144 VLVVAADDGVMPQTRE-AIAHA----KISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 144 IlVvda~~g~~~qt~e-~i~~~----~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
++|+|+++....+... ++..+ ...++|+++|+||+|+...... .....+.. .+ .++++++||++|
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~~~Sa~~~ 171 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAE------SW--GATFMESSAREN 171 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHH------HH--TCEEEECCTTCH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHH------Hh--CCeEEEEeCCCC
Confidence 9999999843222222 22222 2347899999999998653211 11111111 12 248999999999
Q ss_pred CChhHHHHHHHHHH
Q psy1758 217 VGINKLLENISLQA 230 (1527)
Q Consensus 217 ~gI~eL~~~l~~~~ 230 (1527)
.|++++|+.|....
T Consensus 172 ~~v~~l~~~l~~~i 185 (201)
T 3oes_A 172 QLTQGIFTKVIQEI 185 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998654
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.2e-17 Score=170.00 Aligned_cols=153 Identities=25% Similarity=0.298 Sum_probs=114.5
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC----
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD---- 997 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d---- 997 (1527)
+++|+++|++|+|||||+++|+..... ..+...++|.+.....+.+++..+.||||||+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 65 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSA---------------VVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKW 65 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEETTEEEEEEECGGGCSSSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCee---------------eccCCCCceecceEEEEEeCCceEEEEECCCCCCccch
Confidence 368999999999999999999865211 1223456677777777888899999999999987
Q ss_pred ---chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 998 ---FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 998 ---f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
+...+...++.+|++++|+|++++.......+...+...++|+++|+||+|+.+.+ +++.+ +. .
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-----~~~~~----~~----~ 132 (161)
T 2dyk_A 66 EKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE-----LYLGP----LY----G 132 (161)
T ss_dssp CHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG-----GGCGG----GG----G
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch-----HhHHH----HH----h
Confidence 34556667899999999999999877777777777777899999999999986531 11111 11 1
Q ss_pred cCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1075 LDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1075 ~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+ +++++||++|. |++++++.+.+.+|
T Consensus 133 ~~~~~~~~~Sa~~~~----------gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 133 LGFGDPIPTSSEHAR----------GLEELLEAIWERLP 161 (161)
T ss_dssp GSSCSCEECBTTTTB----------SHHHHHHHHHHHCC
T ss_pred CCCCCeEEEecccCC----------ChHHHHHHHHHhCc
Confidence 234 68999999998 99999999998876
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.7e-18 Score=179.47 Aligned_cols=163 Identities=31% Similarity=0.354 Sum_probs=124.5
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..+|+++|++|+|||||+++|+...-.. ...+++|.+.....+.+++..++||||||+.+|.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 69 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTE----------------QEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFT 69 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSC----------------SSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcccc----------------CCCCceeEeeeEEEEEeCCceEEEEECCCCHHHH
Confidence 345799999999999999999998642111 1123444444555677889999999999999998
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc--CC
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL--DF 1077 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~--~~ 1077 (1527)
....+.+..+|++++|+|++++...++...+..+...++|+++|+||+|+...+.++....+ .......... .+
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~----~~~~~~~~~~~~~~ 145 (178)
T 2lkc_A 70 TMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQEL----MEYNLVPEEWGGDT 145 (178)
T ss_dssp CSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHH----TTTTCCBTTTTSSE
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHH----HhcCcChhHcCCcc
Confidence 88888889999999999999998899988888887789999999999999876544333322 2222111122 25
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
|++++||++|. |+++|++.|.+.+.
T Consensus 146 ~~~~~Sa~~~~----------gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 146 IFCKLSAKTKE----------GLDHLLEMILLVSE 170 (178)
T ss_dssp EEEECCSSSSH----------HHHHHHHHHHHHHH
T ss_pred cEEEEecCCCC----------CHHHHHHHHHHhhh
Confidence 89999999998 99999999987653
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.8e-17 Score=176.10 Aligned_cols=162 Identities=18% Similarity=0.152 Sum_probs=106.3
Q ss_pred cccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCE
Q psy1758 65 SLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDI 142 (1527)
Q Consensus 65 ~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~ 142 (1527)
...+..+|+++|++|+|||||+++|.+..+.....+++. +.....+..++. .+.||||||++.|..++..+++.+|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAF-DNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSS-EEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc-ceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 345678999999999999999999998876555444443 333445566665 67799999999999888899999999
Q ss_pred EEEEEeCCCCCcHHHH--HHHHHHHH--cCCCEEEEEEcccCCcchhHHHHHHHhh----------hcccccccCCCCcE
Q psy1758 143 VVLVVAADDGVMPQTR--EAIAHAKI--SGVPLIVAINKIDKLDINLDRIKQDLIS----------EQVIPEEYGGASPF 208 (1527)
Q Consensus 143 ~IlVvda~~g~~~qt~--e~i~~~~~--~~vpiIvviNKiDl~~~~~~~~~~~l~~----------~~~~~~~~~~~~~v 208 (1527)
+++|+|+++....+.. .++..+.. .++|+++|+||+|+...... ...+.. .......+ +..++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~ 171 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKV--LIELDKCKEKPVPEEAAKLLAEEI-KAASY 171 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHH--HHHHHTTTCCCCCHHHHHHHHHHH-TCSEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhh--hhhhcccccccCCHHHHHHHHHhc-CCcEE
Confidence 9999999984332222 12222332 37999999999999753211 000000 00001111 22489
Q ss_pred EEeeccCCCChhHHHHHHHHHH
Q psy1758 209 ISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 209 ~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
+++||++|.|++++|+.|....
T Consensus 172 ~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 172 IECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998654
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=9.7e-18 Score=186.97 Aligned_cols=155 Identities=15% Similarity=0.182 Sum_probs=112.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc--cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV--FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~--~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|....+. .....++|.......+...+..+.||||||++.|..++..+++.+|+++
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 92 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI 92 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence 45578999999999999999997665543 3445566666655555444568999999999999998999999999999
Q ss_pred EEEeCCCCCcHHHHHHH-HHHHH--cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 145 LVVAADDGVMPQTREAI-AHAKI--SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 145 lVvda~~g~~~qt~e~i-~~~~~--~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
+|+|+++....+....| ..+.. .++|+++|+||+|+.+...... .......+ .++++++||++|.|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~------~~~~~~~~--~~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 93 IMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAK------SIVFHRKK--NLQYYDISAKSNYNFEK 164 (221)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGG------GCCHHHHH--TCEEEECBGGGTBTTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHH------HHHHHHHc--CCEEEEEeCCCCCCHHH
Confidence 99999985433322222 22222 3789999999999976332110 00011111 25899999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|++|...
T Consensus 165 l~~~l~~~ 172 (221)
T 3gj0_A 165 PFLWLARK 172 (221)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999754
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-17 Score=179.22 Aligned_cols=160 Identities=18% Similarity=0.145 Sum_probs=104.7
Q ss_pred cccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEE---eCCeEEEEEeCCChhhHHHHH---Hhhcc
Q psy1758 65 SLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVV---TNHGSITFLDTPGHEAFTAMR---ARGAK 138 (1527)
Q Consensus 65 ~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~---~~~~~i~~iDTPG~e~f~~~~---~~~~~ 138 (1527)
...+.++|+++|++|+|||||++++.+... .....+.+......... .....+.||||||++.|..+. ..+++
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCC-GGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCC-CcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 445678999999999999999998877432 22322322222222222 233589999999999998877 78899
Q ss_pred ccCEEEEEEeCCCCCcHH---HHHHHHHH--HHcCCCEEEEEEcccCCcchhH-----HHHHHHhhhccccccc--CCCC
Q psy1758 139 VTDIVVLVVAADDGVMPQ---TREAIAHA--KISGVPLIVAINKIDKLDINLD-----RIKQDLISEQVIPEEY--GGAS 206 (1527)
Q Consensus 139 ~aD~~IlVvda~~g~~~q---t~e~i~~~--~~~~vpiIvviNKiDl~~~~~~-----~~~~~l~~~~~~~~~~--~~~~ 206 (1527)
.+|++|+|+|+++..... +..++..+ ...++|+++|+||+|+.+.+.. .+....... ..... ...+
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~ 172 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDD--LADAGLEKLHL 172 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHH--HHHTTCTTSCE
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHH--HHHhhhhcCCc
Confidence 999999999999973222 22233332 2347899999999998763211 111111111 11101 2246
Q ss_pred cEEEeeccCCCChhHHHHHHHH
Q psy1758 207 PFISISAKTGVGINKLLENISL 228 (1527)
Q Consensus 207 ~v~~iSAktg~gI~eL~~~l~~ 228 (1527)
+++++||++ .||+++|+.|+.
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~ 193 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQ 193 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHH
T ss_pred ceEEEEech-hhHHHHHHHHHH
Confidence 899999999 999999999864
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=166.99 Aligned_cols=152 Identities=24% Similarity=0.295 Sum_probs=108.6
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++|+|||||+++|.+..+.....++++... ...+..++. .+.+|||||++.|..++..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 46899999999999999999998876554444443332 334445554 578999999999999999999999999999
Q ss_pred EeCCCCCcHHH-HHHHHHHHH----cCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQT-REAIAHAKI----SGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~qt-~e~i~~~~~----~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++....+. ..++..+.. .++|+++|+||+|+.+... ......+.. .+ .++++++||++|.|++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~gi~ 153 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR------SY--GIPYIETSAKTRQGVE 153 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH------HH--TCCEEEECTTTCTTHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH------Hc--CCeEEEecCCCCCCHH
Confidence 99987432221 222222222 3799999999999875221 111222221 11 2489999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
+++++|...
T Consensus 154 ~l~~~l~~~ 162 (166)
T 2ce2_X 154 DAFYTLVRE 162 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999754
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-17 Score=181.25 Aligned_cols=155 Identities=18% Similarity=0.223 Sum_probs=109.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|....+.....+++.... ...+..++ ..+.||||||++.|..++..+++.+|++++
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 457899999999999999999998887655544443322 33444555 378999999999999999999999999999
Q ss_pred EEeCCCCCcHHHH--HHHHHHHH--cCCCEEEEEEcccCCcchhH----------HHHHHHhhhcccccccCCCCcEEEe
Q psy1758 146 VVAADDGVMPQTR--EAIAHAKI--SGVPLIVAINKIDKLDINLD----------RIKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 146 Vvda~~g~~~qt~--e~i~~~~~--~~vpiIvviNKiDl~~~~~~----------~~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
|+|+++....+.. .++..+.. .++|+++|+||+|+.+.... .....+. ..+ +..+++++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~------~~~-~~~~~~~~ 159 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELR------KQI-GAAAYIEC 159 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHH------HHH-TCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHH------HHc-CCceEEEc
Confidence 9999984322221 22233333 27999999999998653210 1111111 111 12489999
Q ss_pred eccCCCChhHHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~~ 230 (1527)
||++|.|++++|+.|....
T Consensus 160 Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 160 SSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999997553
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-16 Score=172.02 Aligned_cols=155 Identities=22% Similarity=0.276 Sum_probs=101.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+.....++++... ...+..++. .+.||||||++.|..++..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 4557999999999999999999998876554444443332 344555554 5889999999999999999999999999
Q ss_pred EEEeCCCCCcHHHHH-HHHHHH----HcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 145 LVVAADDGVMPQTRE-AIAHAK----ISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 145 lVvda~~g~~~qt~e-~i~~~~----~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
+|+|+++....+... ++..+. ..++|+++|+||+|+..... ......+.. .+ .++++++||++|.|
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~g 169 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAK------SY--GIPFIETSAKTRQG 169 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH------HH--TCCEEECCTTTCTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHH------Hc--CCeEEEEeCCCCCC
Confidence 999999843322222 222222 24789999999999875221 111122211 11 14899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
+++++++|....
T Consensus 170 i~~l~~~l~~~~ 181 (190)
T 3con_A 170 VEDAFYTLVREI 181 (190)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998654
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-17 Score=201.43 Aligned_cols=158 Identities=25% Similarity=0.243 Sum_probs=99.2
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
...+|+|+|++|+|||||+|+|++.. ....+...|+|.+.....+.++++.++||||||+.++..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~---------------~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~ 296 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQE---------------RAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGE 296 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC---------------------------------CEEEEETTEEEEEEC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---------------CcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchh
Confidence 44679999999999999999998651 122344578899988889999999999999999998876
Q ss_pred HHHH--------HHHhcCEEEEEEeCCCCCCh----hHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhh
Q psy1758 1001 EVER--------ILSMVDNVLLLIDAVEGPMP----QTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 1068 (1527)
Q Consensus 1001 ev~~--------~l~~aD~ailVVDa~~G~~~----qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l 1068 (1527)
.++. ++..+|++|+|+|++++... ....++..+. ++|+++|+||+|+...+.... +++.+ .
T Consensus 297 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~-~~l~~----~ 369 (476)
T 3gee_A 297 EIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI-RAIAD----G 369 (476)
T ss_dssp -----------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH-HHHHH----H
T ss_pred HHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH-HHHHh----c
Confidence 6544 35889999999999998766 3333333322 789999999999987653221 11221 1
Q ss_pred cccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC-CCCC
Q psy1758 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP-VHKD 1116 (1527)
Q Consensus 1069 ~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp-~p~~ 1116 (1527)
. ..|++++||++|. |+++|+++|.+.++ .+..
T Consensus 370 ~------~~~~i~vSAktg~----------GI~eL~~~i~~~~~~~~~~ 402 (476)
T 3gee_A 370 T------GTEVIGISALNGD----------GIDTLKQHMGDLVKNLDKL 402 (476)
T ss_dssp H------TSCEEECBTTTTB----------SHHHHHHHHTHHHHSSCCC
T ss_pred C------CCceEEEEECCCC----------CHHHHHHHHHHHHhhccCC
Confidence 0 1479999999998 99999999999887 5543
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-17 Score=192.07 Aligned_cols=149 Identities=21% Similarity=0.275 Sum_probs=113.4
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH------HHHHhhcc--cc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT------AMRARGAK--VT 140 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~------~~~~~~~~--~a 140 (1527)
.++|+++|++|+|||||+++|++.....+..+|+|.+.....+.. +..+.+|||||++.|. .+...++. .+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 81 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA 81 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence 468999999999999999999998877788889998877666655 6789999999998775 44455554 69
Q ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 141 D~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|++++|+|+++ ......++..+...++|+++|+||+|+..... ......+.. .+ .+|++++||++|.|+
T Consensus 82 d~vi~V~D~t~--~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~------~l--g~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 82 DSILNVVDATN--LERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSY------HL--GVPVVATSALKQTGV 151 (272)
T ss_dssp SEEEEEEEGGG--HHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHH------HH--TSCEEECBTTTTBSH
T ss_pred CEEEEEecCCc--hHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHH------Hc--CCCEEEEEccCCCCH
Confidence 99999999987 23344455566678999999999999854211 001111111 11 258999999999999
Q ss_pred hHHHHHHHH
Q psy1758 220 NKLLENISL 228 (1527)
Q Consensus 220 ~eL~~~l~~ 228 (1527)
++|++.+..
T Consensus 152 ~el~~~i~~ 160 (272)
T 3b1v_A 152 DQVVKKAAH 160 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999964
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.2e-17 Score=174.95 Aligned_cols=159 Identities=14% Similarity=0.140 Sum_probs=110.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+...+.+++.... ...+..++ ..+.||||||++.|..++..+++.+|+++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 3457899999999999999999999887655555554443 23344444 47899999999999999999999999999
Q ss_pred EEEeCCCCCcHHHH-H-HHHHHHH--cCCCEEEEEEcccCCcchhHHHHHHHhh----------hcccccccCCCCcEEE
Q psy1758 145 LVVAADDGVMPQTR-E-AIAHAKI--SGVPLIVAINKIDKLDINLDRIKQDLIS----------EQVIPEEYGGASPFIS 210 (1527)
Q Consensus 145 lVvda~~g~~~qt~-e-~i~~~~~--~~vpiIvviNKiDl~~~~~~~~~~~l~~----------~~~~~~~~~~~~~v~~ 210 (1527)
+|+|+++....+.. . ++..+.. .++|+++|+||+|+.+.... ..++.. .......+ +..++++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e 160 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVST--LVELSNHRQTPVSYDQGANMAKQI-GAATYIE 160 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHH--HHHHHTTTCCCCCHHHHHHHHHHH-TCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhh--HhhhhhcccCCCCHHHHHHHHHHc-CCcEEEE
Confidence 99999984322221 1 1222222 47899999999999752110 000000 00011111 2358999
Q ss_pred eecc-CCCChhHHHHHHHHH
Q psy1758 211 ISAK-TGVGINKLLENISLQ 229 (1527)
Q Consensus 211 iSAk-tg~gI~eL~~~l~~~ 229 (1527)
+||+ +|.|++++|+.+...
T Consensus 161 ~Sa~~~~~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 161 CSALQSENSVRDIFHVATLA 180 (184)
T ss_dssp CBTTTBHHHHHHHHHHHHHH
T ss_pred eeecCCCcCHHHHHHHHHHH
Confidence 9999 689999999999754
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.69 E-value=4.6e-17 Score=178.82 Aligned_cols=154 Identities=16% Similarity=0.129 Sum_probs=80.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc--ccccccCCceeEEEEEEEEEeCC----eEEEEEeCCChhhHHHHHHhhccccC
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT--NVVFSEAGGITQHIGAYNVVTNH----GSITFLDTPGHEAFTAMRARGAKVTD 141 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~--~~~~~~~~giT~~~~~~~~~~~~----~~i~~iDTPG~e~f~~~~~~~~~~aD 141 (1527)
+..+|+++|++|+|||||+++|.+. .+.....++++.+.....+.+++ ..+.||||||++.|..++..+++.+|
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 98 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY 98 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence 4578999999999999999999988 55555555555566666777774 47999999999999999999999999
Q ss_pred EEEEEEeCCCCCcHHH-HHHHHHHHH------cCCCEEEEEEcccCCc-chh--HHHHHHHhhhcccccccCCCCcEEEe
Q psy1758 142 IVVLVVAADDGVMPQT-REAIAHAKI------SGVPLIVAINKIDKLD-INL--DRIKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 142 ~~IlVvda~~g~~~qt-~e~i~~~~~------~~vpiIvviNKiDl~~-~~~--~~~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
++++|+|+++....+. ..++..+.. .++|+++|+||+|+.+ ... ......+.. .++ ++++++
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~------~~~--~~~~~~ 170 (208)
T 2yc2_C 99 YAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT------TNT--LDFFDV 170 (208)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH------HTT--CEEEEC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH------HcC--CEEEEe
Confidence 9999999998543222 223333332 5789999999999975 211 111111111 122 589999
Q ss_pred eccC-CCChhHHHHHHHHH
Q psy1758 212 SAKT-GVGINKLLENISLQ 229 (1527)
Q Consensus 212 SAkt-g~gI~eL~~~l~~~ 229 (1527)
||++ |.|++++|++|...
T Consensus 171 Sa~~~~~gi~~l~~~i~~~ 189 (208)
T 2yc2_C 171 SANPPGKDADAPFLSIATT 189 (208)
T ss_dssp CC-------CHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHHH
Confidence 9999 99999999999754
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=173.03 Aligned_cols=154 Identities=25% Similarity=0.316 Sum_probs=108.4
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCC-----------hhhHHHHHHhhcc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG-----------HEAFTAMRARGAK 138 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG-----------~e~f~~~~~~~~~ 138 (1527)
++|+++|++|+|||||+++|.+..+..+..+++|.+.....+ . .+.+||||| ++.|..++..+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE 77 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHHHHHHHHHHHHHHH
Confidence 579999999999999999999998887888888776555443 2 789999999 7888888776655
Q ss_pred c----cCEEEEEEeCCCC-----------CcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc-cccc
Q psy1758 139 V----TDIVVLVVAADDG-----------VMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI-PEEY 202 (1527)
Q Consensus 139 ~----aD~~IlVvda~~g-----------~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~-~~~~ 202 (1527)
. +++++.|+|+.+. ..+++.+....+...++|+++|+||+|+.... ......+...... ...+
T Consensus 78 ~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 156 (190)
T 2cxx_A 78 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLSEI 156 (190)
T ss_dssp HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGGGH
T ss_pred hhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhhcc
Confidence 4 5566666665531 11122334455566789999999999998754 2222222221111 0011
Q ss_pred CCCCcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 203 GGASPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 203 ~~~~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
..+++++||++|.|+++++++|....
T Consensus 157 --~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 157 --DKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp --HHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --CCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 13689999999999999999997653
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-17 Score=192.24 Aligned_cols=159 Identities=20% Similarity=0.217 Sum_probs=118.2
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCC-C--
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA-D-- 997 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~-d-- 997 (1527)
+..+|+|+||+|+|||||+++|++....+ .....++|.....+.+.+++.+++++||||+. .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i---------------~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~ 71 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISI---------------TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 71 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEE---------------CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccc---------------cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch
Confidence 34589999999999999999999762211 11223445444445677889999999999998 3
Q ss_pred ------chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc
Q psy1758 998 ------FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 998 ------f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~ 1071 (1527)
|...+.+++..+|++++|+|+++ +.++++.+++.+...+.|.++|+||+|+... .+...+.+.+....
T Consensus 72 ~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~-~~~~~~~l~~l~~~---- 145 (301)
T 1ega_A 72 RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQE-KADLLPHLQFLASQ---- 145 (301)
T ss_dssp HHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCC-HHHHHHHHHHHHTT----
T ss_pred hhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCcc-HHHHHHHHHHHHHh----
Confidence 33334556788999999999988 8899998888888789999999999999752 22222333222111
Q ss_pred ccccCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1072 EEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1072 ~~~~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
..+ +++++||++|. |++.|++.+.+.+|.
T Consensus 146 ---~~~~~~i~iSA~~g~----------~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 146 ---MNFLDIVPISAETGL----------NVDTIAAIVRKHLPE 175 (301)
T ss_dssp ---SCCSEEEECCTTTTT----------THHHHHHHHHTTCCB
T ss_pred ---cCcCceEEEECCCCC----------CHHHHHHHHHHhCCc
Confidence 123 58999999998 999999999998874
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=174.33 Aligned_cols=154 Identities=21% Similarity=0.223 Sum_probs=109.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+.....++++... ...+..++ ..+.||||||++. ..++..+++.+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 3568999999999999999999999887665555555443 23344454 4689999999988 777788889999999
Q ss_pred EEEeCCCCCc----HHHHHHHHHH-HHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 145 LVVAADDGVM----PQTREAIAHA-KISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 145 lVvda~~g~~----~qt~e~i~~~-~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+|+|+++... ..|.+.+... ...++|+++|+||+|+.+.... .....+.. .+ .++++++||++|.
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~~~Sa~~g~ 175 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT------EL--ACAFYECSACTGE 175 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH------HH--TSEEEECCTTTCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH------Hh--CCeEEEECCCcCC
Confidence 9999998322 1222222222 2358999999999999653111 11111111 11 2589999999999
Q ss_pred -ChhHHHHHHHHHH
Q psy1758 218 -GINKLLENISLQA 230 (1527)
Q Consensus 218 -gI~eL~~~l~~~~ 230 (1527)
|++++|++|....
T Consensus 176 ~gi~~l~~~l~~~i 189 (196)
T 2atv_A 176 GNITEIFYELCREV 189 (196)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 9999999997553
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=172.42 Aligned_cols=153 Identities=12% Similarity=0.147 Sum_probs=104.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+.....+++...+ ...+..++. .+.||||||++.|..+ ..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 4557999999999999999999999887665555554443 233444543 6889999999988764 56889999999
Q ss_pred EEEeCCCCCcHHHH-HHHHHHHH------cCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeec-c
Q psy1758 145 LVVAADDGVMPQTR-EAIAHAKI------SGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISA-K 214 (1527)
Q Consensus 145 lVvda~~g~~~qt~-e~i~~~~~------~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSA-k 214 (1527)
+|+|+++....+.. .++..+.. .++|+++|+||+|+.+... ......+.. .+ .++++++|| +
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~--~~~~~e~Sa~~ 168 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG------RF--GCLFFEVSACL 168 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH------HH--TCEEEECCSSS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH------Hc--CCcEEEEeecC
Confidence 99999974322221 12222221 4899999999999964211 111111111 12 248999999 8
Q ss_pred CCCChhHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~ 229 (1527)
+|.||+++|+.|...
T Consensus 169 ~g~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 169 DFEHVQHVFHEAVRE 183 (187)
T ss_dssp CSHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHH
Confidence 999999999999754
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=169.74 Aligned_cols=148 Identities=11% Similarity=0.176 Sum_probs=102.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|+|||||+++|.+..+.. ..+++.... ...+..++. .+.||||||++.+ .+++.+|++++
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~d~~il 78 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF 78 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCCH-----HHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCchh-----HHHHhCCEEEE
Confidence 45789999999999999999999988754 344333222 344555554 6889999999873 45678999999
Q ss_pred EEeCCCCCcHHHHH----HHHHHHH---cCCCEEEEEEcccCCcc-----hhHHHHHHHhhhcccccccCCCCcEEEeec
Q psy1758 146 VVAADDGVMPQTRE----AIAHAKI---SGVPLIVAINKIDKLDI-----NLDRIKQDLISEQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 146 Vvda~~g~~~qt~e----~i~~~~~---~~vpiIvviNKiDl~~~-----~~~~~~~~l~~~~~~~~~~~~~~~v~~iSA 213 (1527)
|+|+++....+... .+..+.. .++|+++|+||+|+... ...+. ..+.. .+ ..++++++||
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~-~~~~~------~~-~~~~~~~~Sa 150 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA-RALXA------DM-KRCSYYETXA 150 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHH-HHHHH------HH-SSEEEEEEBT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHH-HHHHH------hh-cCCeEEEEec
Confidence 99999844332222 2333332 47899999999998421 11111 11111 11 1358999999
Q ss_pred cCCCChhHHHHHHHHHH
Q psy1758 214 KTGVGINKLLENISLQA 230 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~~ 230 (1527)
++|.|++++|+.|....
T Consensus 151 ~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 151 TYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp TTTBTHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHH
Confidence 99999999999997543
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-17 Score=201.50 Aligned_cols=153 Identities=22% Similarity=0.292 Sum_probs=116.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCe-EEEEEeCCChhhHHHH-------HHhhc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHG-SITFLDTPGHEAFTAM-------RARGA 137 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~-~i~~iDTPG~e~f~~~-------~~~~~ 137 (1527)
...++|+++|++|||||||+++|.+..+ ..+..+++|.+.....+.+.+. +++||||||+++|..+ ...++
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l 111 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF 111 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH
Confidence 3557999999999999999999998886 4667789999988888888776 8999999999877433 45577
Q ss_pred cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 138 KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 138 ~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+.+|++|+|+|+ +...++.+++..+...++|+++|+||+|+......+....+. ..+ .++++++||++|.
T Consensus 112 ~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~------~~~--g~~v~~vSAktg~ 181 (423)
T 3qq5_A 112 YRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYE------SRY--EAKVLLVSALQKK 181 (423)
T ss_dssp TSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSS------CCT--TCCCCCCSSCCTT
T ss_pred hcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHH------HHc--CCCEEEEECCCCC
Confidence 889999999999 678888889999998999999999999998755442222221 122 2589999999999
Q ss_pred ChhHHHHHHHHH
Q psy1758 218 GINKLLENISLQ 229 (1527)
Q Consensus 218 gI~eL~~~l~~~ 229 (1527)
|++++++.|...
T Consensus 182 gI~eL~~~L~~~ 193 (423)
T 3qq5_A 182 GFDDIGKTISEI 193 (423)
T ss_dssp STTTHHHHHHHH
T ss_pred CHHHHHHHHHHh
Confidence 999999999754
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-16 Score=196.46 Aligned_cols=160 Identities=23% Similarity=0.308 Sum_probs=117.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHH------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMR------------ 133 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~------------ 133 (1527)
...++|+++|++|+|||||+++|.+... ..+..+|+|++.....+.+++..+.+|||||+..+....
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 3568999999999999999999998874 578889999998888899999999999999986544332
Q ss_pred HhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh---HHHHHHHhhhcccccccCCCCcEEE
Q psy1758 134 ARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL---DRIKQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 134 ~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~---~~~~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
..++..+|++++|+|++++...+.......+...++|+++|+||+|+.+.+. .+....+.... ......|+++
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 333 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKL----YFIDYSPLIF 333 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHC----GGGTTSCEEE
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHh----ccCCCCcEEE
Confidence 2456789999999999998888877777777788999999999999976332 12222221111 1113468999
Q ss_pred eeccCCCChhHHHHHHHHHH
Q psy1758 211 ISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 211 iSAktg~gI~eL~~~l~~~~ 230 (1527)
+||++|.|+++|++.+....
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAY 353 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999997554
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.3e-17 Score=200.58 Aligned_cols=154 Identities=25% Similarity=0.321 Sum_probs=115.0
Q ss_pred ccccCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHH--------HH
Q psy1758 64 ESLVRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAM--------RA 134 (1527)
Q Consensus 64 ~~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~--------~~ 134 (1527)
.....+.+|+++|++|+|||||+|+|.+... ..+..+++|++.....+.+++.++.||||||+..+... ..
T Consensus 219 ~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~ 298 (462)
T 3geh_A 219 ELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSR 298 (462)
T ss_dssp HHHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------
T ss_pred hhhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHh
Confidence 3445677899999999999999999998765 46777899999888888889999999999998766433 23
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
.++..+|++++|+|++++...+..+++..+. +.|+++|+||+|+....... ....+....+++++||+
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~----------~~~~~~~~~~~i~iSAk 366 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLIT----------SLEYPENITQIVHTAAA 366 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGST----------TCCCCTTCCCEEEEBTT
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhH----------HHHHhccCCcEEEEECC
Confidence 4678899999999999988887777666654 47999999999997643211 11122234689999999
Q ss_pred CCCChhHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~ 229 (1527)
+|.|+++|++.|...
T Consensus 367 tg~Gi~eL~~~i~~~ 381 (462)
T 3geh_A 367 QKQGIDSLETAILEI 381 (462)
T ss_dssp TTBSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999754
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-16 Score=175.81 Aligned_cols=159 Identities=14% Similarity=0.140 Sum_probs=110.8
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+...+.+++..+. ...+..++ ..+.||||||++.|..++..+++.+|++|
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 3557899999999999999999999888665556555444 23444444 47899999999999999999999999999
Q ss_pred EEEeCCCCCcHHHH--HHHHHHHH--cCCCEEEEEEcccCCcchhHHHHHHHhh----------hcccccccCCCCcEEE
Q psy1758 145 LVVAADDGVMPQTR--EAIAHAKI--SGVPLIVAINKIDKLDINLDRIKQDLIS----------EQVIPEEYGGASPFIS 210 (1527)
Q Consensus 145 lVvda~~g~~~qt~--e~i~~~~~--~~vpiIvviNKiDl~~~~~~~~~~~l~~----------~~~~~~~~~~~~~v~~ 210 (1527)
+|+|+++....+.. .++..+.. .++|+++|+||+|+.+.... ..++.. .......+ +..++++
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e 181 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVST--LVELSNHRQTPVSYDQGANMAKQI-GAATYIE 181 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHH--HHHHHTTTCCCCCHHHHHHHHHHH-TCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhh--hhhhcccccCCCCHHHHHHHHHHc-CCCEEEE
Confidence 99999984322221 12222322 47899999999999752110 000000 00011111 2358999
Q ss_pred eecc-CCCChhHHHHHHHHH
Q psy1758 211 ISAK-TGVGINKLLENISLQ 229 (1527)
Q Consensus 211 iSAk-tg~gI~eL~~~l~~~ 229 (1527)
+||+ +|.||+++|+.+...
T Consensus 182 ~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 182 CSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp CCTTTCHHHHHHHHHHHHHH
T ss_pred eeeccCCcCHHHHHHHHHHH
Confidence 9999 689999999999754
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-16 Score=174.06 Aligned_cols=158 Identities=17% Similarity=0.198 Sum_probs=105.8
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhh-HHHHHHhhccccCE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEA-FTAMRARGAKVTDI 142 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~-f~~~~~~~~~~aD~ 142 (1527)
....+|+++|.+|+|||||+++|.+... .....++++.+.....+..++. .+.+|||+|++. +..++..+++.+|+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 3457899999999999999999986543 2233334444444455566665 567899999887 56677777899999
Q ss_pred EEEEEeCCCCCcHHHH-HHHHHHH----HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 143 VVLVVAADDGVMPQTR-EAIAHAK----ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 143 ~IlVvda~~g~~~qt~-e~i~~~~----~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+++|||+++....+.. .++..+. ..++|+++|+||+|+.+......... ......+ .++++++||++|.
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~----~~~a~~~--~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG----RACAVVF--DCKFIETSAAVQH 188 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH----HHHHHHH--TCEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHH----HHHHHHc--CCEEEEEeCCCCC
Confidence 9999999983322222 2222232 24789999999999964211100000 0001112 2589999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
||+++|+.|....
T Consensus 189 ~v~elf~~l~~~i 201 (211)
T 2g3y_A 189 NVKELFEGIVRQV 201 (211)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998654
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.2e-17 Score=200.68 Aligned_cols=154 Identities=23% Similarity=0.342 Sum_probs=122.0
Q ss_pred cccCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChh-hHH--------HHHH
Q psy1758 65 SLVRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE-AFT--------AMRA 134 (1527)
Q Consensus 65 ~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e-~f~--------~~~~ 134 (1527)
....+++|+++|++|+|||||+|+|.+... ..+..+++|++.....+.+++.++.||||||+. .+. ....
T Consensus 239 ~~r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~ 318 (482)
T 1xzp_A 239 LLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTL 318 (482)
T ss_dssp HHHHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHH
T ss_pred hccCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHH
Confidence 344568999999999999999999998864 578889999999988999999999999999987 543 3345
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
.+++.+|++|+|+|++++...+..+.+..+ .+.|+++|+||+|+.+.... .++... .+...+++++||+
T Consensus 319 ~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~~---~~~~~~------~~~~~~~i~iSAk 387 (482)
T 1xzp_A 319 QEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINE---EEIKNK------LGTDRHMVKISAL 387 (482)
T ss_dssp HHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCH---HHHHHH------HTCSTTEEEEEGG
T ss_pred HHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccCH---HHHHHH------hcCCCcEEEEECC
Confidence 678899999999999998777666666554 47899999999999753111 111111 1122589999999
Q ss_pred CCCChhHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~ 229 (1527)
+|.|+++|+++|...
T Consensus 388 tg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 388 KGEGLEKLEESIYRE 402 (482)
T ss_dssp GTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999754
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-18 Score=188.48 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=108.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+.++|+++|++|+|||||+++|.+..+.....++++.+.....+.+++. .+.||||||++.|..++..+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 34578999999999999999999988877666677777777777777774 7899999999999988889999999999
Q ss_pred EEEeCCCCCcHHHHH-HHHHHH---HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 145 LVVAADDGVMPQTRE-AIAHAK---ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 145 lVvda~~g~~~qt~e-~i~~~~---~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+|+++....+... ++..+. ..++|+++|+||+|+.+....... ........ ..++++++||++|.|++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~----~~~~~~~~--~~~~~~~vSA~~g~gv~ 184 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT----TAKEFADS--LGIPFLETSAKNATNVE 184 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSC----C-CHHHHT--TTCCBCCCCC---HHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHH----HHHHHHHH--cCCeEEEEECCCCCCHH
Confidence 999999854433322 222332 237899999999999653210000 00000111 13589999999999999
Q ss_pred HHHHHHHH
Q psy1758 221 KLLENISL 228 (1527)
Q Consensus 221 eL~~~l~~ 228 (1527)
++|++|..
T Consensus 185 ~l~~~l~~ 192 (199)
T 3l0i_B 185 QSFMTMAA 192 (199)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 99999863
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.5e-17 Score=183.36 Aligned_cols=150 Identities=22% Similarity=0.293 Sum_probs=115.4
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH-
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE- 1001 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e- 1001 (1527)
++|+++|++|+|||||+++|++... .....+|+|++.....+.+++..++||||||+.+|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~----------------~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~ 65 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ----------------RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANA 65 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE----------------EEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC----------------CccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccc
Confidence 6899999999999999999975421 11234688999999999999999999999999988742
Q ss_pred ---------HHHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHHHHHHHhhhc
Q psy1758 1002 ---------VERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLC 1069 (1527)
Q Consensus 1002 ---------v~~~l--~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~~~~~~~~l~ 1069 (1527)
...++ ..+|++|+|+|++. ......++..+.+.++|+++|+||+|+...+ .....+++...
T Consensus 66 ~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~----- 138 (256)
T 3iby_A 66 EGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESL----- 138 (256)
T ss_dssp ---CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHH-----
T ss_pred cCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHH-----
Confidence 22344 78999999999987 3455566677778899999999999975432 11122233222
Q ss_pred ccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1070 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1070 ~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
+.+|++++||++|. |+++|++.+.+.
T Consensus 139 -----lg~~vi~~SA~~g~----------gi~el~~~i~~~ 164 (256)
T 3iby_A 139 -----LGCSVIPIQAHKNI----------GIPALQQSLLHC 164 (256)
T ss_dssp -----HCSCEEECBGGGTB----------SHHHHHHHHHTC
T ss_pred -----cCCCEEEEECCCCC----------CHHHHHHHHHhh
Confidence 24689999999998 999999999876
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-16 Score=171.17 Aligned_cols=169 Identities=20% Similarity=0.208 Sum_probs=114.4
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeE-EEEecCeEEEEEeCCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNC-SIEYNGTRINIIDTPGHAD 997 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~-~~~~~~~~iniiDTPGh~d 997 (1527)
.....+|+++|++|+|||||++.|.......... . ........++..|.+...... .+....+.++||||||+.+
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~-~---~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKG-E---MVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF 86 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBC-C---CEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhccccccc-c---ccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence 3556799999999999999997765432111000 0 000011112223333332222 3334457899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHH---------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhh
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK---------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 1068 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~---------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l 1068 (1527)
|......+++.+|++|+|+|++++...+....+..+.. .++|+++|+||+|+.+... .+++.+.+..
T Consensus 87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~- 162 (198)
T 3t1o_A 87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALP---VEMVRAVVDP- 162 (198)
T ss_dssp CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCC---HHHHHHHHCT-
T ss_pred HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccC---HHHHHHHHHh-
Confidence 99999999999999999999997666555555544433 4789999999999976522 2333333322
Q ss_pred cccccccCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1069 CATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1069 ~~~~~~~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..+ +++++||++|. |++++++.+.+.+
T Consensus 163 ------~~~~~~~~~Sa~~~~----------gv~~l~~~l~~~i 190 (198)
T 3t1o_A 163 ------EGKFPVLEAVATEGK----------GVFETLKEVSRLV 190 (198)
T ss_dssp ------TCCSCEEECBGGGTB----------THHHHHHHHHHHH
T ss_pred ------cCCceEEEEecCCCc----------CHHHHHHHHHHHH
Confidence 234 79999999998 9999999988765
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-16 Score=168.67 Aligned_cols=163 Identities=18% Similarity=0.165 Sum_probs=111.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
+..+|+++|++|+|||||+++|+..... . ... |+......+.+++..++||||||+.+|..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~-------------~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 75 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV--H-------------TSP----TIGSNVEEIVINNTRFLMWDIGGQESLRS 75 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE--E-------------EEC----CSCSSCEEEEETTEEEEEEECCC----CG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--c-------------CcC----CCccceEEEEECCEEEEEEECCCCHhHHH
Confidence 4578999999999999999999854211 0 011 22223345667889999999999999998
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.+..+++.+|++|+|+|++++.. ......+..+.. .+.|+++|+||+|+.+... .+++.+.+.... ....
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~--~~~~ 150 (187)
T 1zj6_A 76 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT---VAEISQFLKLTS--IKDH 150 (187)
T ss_dssp GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTGGG--CCSS
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCC---HHHHHHHhChhh--hcCC
Confidence 88899999999999999998643 333444444443 4789999999999976432 223333222110 1123
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN 1117 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~ 1117 (1527)
.++++++||++|. |+++++++|.+.++.+...
T Consensus 151 ~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~~~~ 182 (187)
T 1zj6_A 151 QWHIQACCALTGE----------GLCQGLEWMMSRLKIRLEH 182 (187)
T ss_dssp CEEEEECBTTTTB----------THHHHHHHHHHHHCC----
T ss_pred CcEEEEccCCCCc----------CHHHHHHHHHHHHHHHhhh
Confidence 5689999999998 9999999999988766543
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-16 Score=170.29 Aligned_cols=159 Identities=17% Similarity=0.208 Sum_probs=102.4
Q ss_pred CCEEEEEecCCCChhHHHHHHHcc--ccccccCCceeEEEEEEEEEe-----CCeEEEEEeCCChhhHHHHHHhhccccC
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKT--NVVFSEAGGITQHIGAYNVVT-----NHGSITFLDTPGHEAFTAMRARGAKVTD 141 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~--~~~~~~~~giT~~~~~~~~~~-----~~~~i~~iDTPG~e~f~~~~~~~~~~aD 141 (1527)
..+|+++|++|+|||||+++|.+. .+...+.++++.++....+.. ....+.+|||||++.|..++..+++.+|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 368999999999999999999885 333344555666665544433 3447999999999999998888899999
Q ss_pred EEEEEEeCCCCC-cHH-HHHHHHHHHH--cCCCEEEEEEcccCCcchhHH-HHHHHhhhcccccccCC--CCcEEEeecc
Q psy1758 142 IVVLVVAADDGV-MPQ-TREAIAHAKI--SGVPLIVAINKIDKLDINLDR-IKQDLISEQVIPEEYGG--ASPFISISAK 214 (1527)
Q Consensus 142 ~~IlVvda~~g~-~~q-t~e~i~~~~~--~~vpiIvviNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~--~~~v~~iSAk 214 (1527)
++++|+|++++. ... ...++..+.. .+.|+++|+||+|+.+..... ........ ....++- ..+++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKE--LLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHH--TTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHH--HHHhcCCcchhheEEEecc
Confidence 999999998852 111 1222222222 478999999999997632211 11111111 1111211 0139999999
Q ss_pred CCC-ChhHHHHHHHHH
Q psy1758 215 TGV-GINKLLENISLQ 229 (1527)
Q Consensus 215 tg~-gI~eL~~~l~~~ 229 (1527)
+|. |+++|++.|...
T Consensus 160 ~~~~~~~~l~~~i~~~ 175 (184)
T 2zej_A 160 EESDALAKLRKTIINE 175 (184)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHH
Confidence 997 999999998644
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.8e-16 Score=169.08 Aligned_cols=161 Identities=16% Similarity=0.171 Sum_probs=112.0
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCC--
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA-- 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~-- 996 (1527)
.....+|+++|++|+|||||+++|+..... .......|.|....... + +..++||||||+.
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~t~~~~~~~--~-~~~~~l~Dt~G~~~~ 82 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNL--------------ARTSSKPGKTQTLNFYI--I-NDELHFVDVPGYGFA 82 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEEEE--E-TTTEEEEECCCBCCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCc--------------cccCCCCCceeeEEEEE--E-CCcEEEEECCCCCcc
Confidence 345689999999999999999999865210 01122345555443332 2 3479999999943
Q ss_pred --------CchHHHHHHHHhc---CEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHHHHHH
Q psy1758 997 --------DFGGEVERILSMV---DNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFDL 1064 (1527)
Q Consensus 997 --------df~~ev~~~l~~a---D~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~~~~~ 1064 (1527)
.|...+..+++.+ |++++|+|++++...+...++..+...++|+++|+||+|+...+ .....+++.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~ 162 (195)
T 1svi_A 83 KVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQT 162 (195)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHH
Confidence 4455556666666 99999999999888887777788888899999999999997643 22233444432
Q ss_pred HhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1065 FDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1065 ~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+. . ....+++++||++|. |++++++.|.+.++
T Consensus 163 ~~---~---~~~~~~~~~Sa~~~~----------gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 163 LN---I---DPEDELILFSSETKK----------GKDEAWGAIKKMIN 194 (195)
T ss_dssp HT---C---CTTSEEEECCTTTCT----------THHHHHHHHHHHHT
T ss_pred Hc---c---cCCCceEEEEccCCC----------CHHHHHHHHHHHhc
Confidence 32 1 124689999999998 99999999988764
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-16 Score=184.01 Aligned_cols=155 Identities=23% Similarity=0.330 Sum_probs=118.4
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH-
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG- 1000 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~- 1000 (1527)
..+|+++|++|+|||||+|+|++... .....+|+|++.....+.+++..++||||||+.+|..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~----------------~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 66 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ----------------RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTI 66 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE----------------EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC-
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc----------------ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccc
Confidence 35899999999999999999986521 1123468999999999999999999999999998772
Q ss_pred --------HHHH-H--HHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHHHHHHHhhh
Q psy1758 1001 --------EVER-I--LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKL 1068 (1527)
Q Consensus 1001 --------ev~~-~--l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~~~~~~~~l 1068 (1527)
.+.+ + ...+|++|+|+|++. ..+...++..+.+.++|+++|+||+|+...+ .....+++.+
T Consensus 67 ~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~----- 139 (274)
T 3i8s_A 67 SSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSA----- 139 (274)
T ss_dssp ---CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHH-----
T ss_pred cccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHH-----
Confidence 1122 2 268999999999987 3455666677788899999999999985322 1111222222
Q ss_pred cccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1069 ~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.+++|++++||++|. |+++|++++.+.++.+
T Consensus 140 -----~lg~~~i~~SA~~g~----------gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 140 -----RLGCPVIPLVSTRGR----------GIEALKLAIDRYKANE 170 (274)
T ss_dssp -----HHTSCEEECCCGGGH----------HHHHHHHHHHTCCCCC
T ss_pred -----hcCCCEEEEEcCCCC----------CHHHHHHHHHHHHhcC
Confidence 224689999999998 9999999999888654
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.5e-16 Score=181.33 Aligned_cols=156 Identities=15% Similarity=0.192 Sum_probs=111.9
Q ss_pred CCEEEEEecCCCChhHHHHHHHccc-cccccCCceeEEEEEEEEEe-CCeEEEEEeCCChhhH-----HHHHHhhccccC
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTN-VVFSEAGGITQHIGAYNVVT-NHGSITFLDTPGHEAF-----TAMRARGAKVTD 141 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~-~~~~~~~giT~~~~~~~~~~-~~~~i~~iDTPG~e~f-----~~~~~~~~~~aD 141 (1527)
..+|+++|++|+|||||+++|.+.. ...+..++.|++.....+.+ ++..+.+|||||++.| ..++..+++.+|
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad 82 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQ 82 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCC
Confidence 4689999999999999999988774 33444566777776666665 5668999999999999 556677789999
Q ss_pred EEEEEEeCCCCCcHHHHH----HHHHHHH--cCCCEEEEEEcccCCcchhHH----HHHHHhhhcccccccCC-CCcEEE
Q psy1758 142 IVVLVVAADDGVMPQTRE----AIAHAKI--SGVPLIVAINKIDKLDINLDR----IKQDLISEQVIPEEYGG-ASPFIS 210 (1527)
Q Consensus 142 ~~IlVvda~~g~~~qt~e----~i~~~~~--~~vpiIvviNKiDl~~~~~~~----~~~~l~~~~~~~~~~~~-~~~v~~ 210 (1527)
++|+|+|+++....+... .+..+.. .++|+++|+||+|+.+.+... ..... .......++. .+++++
T Consensus 83 ~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~--~~~~~~~~g~~~~~~~~ 160 (307)
T 3r7w_A 83 VLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKN--LSETSSEFGFPNLIGFP 160 (307)
T ss_dssp EEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHH--HHHHHHTTTCCSCEEEE
T ss_pred EEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHH--HHHHHHHcCCCCeEEEE
Confidence 999999999866544333 2333332 379999999999997632221 11111 1111222221 369999
Q ss_pred eeccCCCChhHHHHHHH
Q psy1758 211 ISAKTGVGINKLLENIS 227 (1527)
Q Consensus 211 iSAktg~gI~eL~~~l~ 227 (1527)
+||++ .|+.++|..+.
T Consensus 161 tSa~~-~~i~e~~~~iv 176 (307)
T 3r7w_A 161 TSIWD-ESLYKAWSQIV 176 (307)
T ss_dssp CCTTS-SHHHHHHHHHH
T ss_pred eeecC-ChHHHHHHHHH
Confidence 99999 89999988876
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.64 E-value=6.4e-16 Score=176.92 Aligned_cols=160 Identities=14% Similarity=0.089 Sum_probs=114.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc-cccccCCc-eeEEEEEEEEEeCCeEEEEEeCCChhhH-----------HHHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN-VVFSEAGG-ITQHIGAYNVVTNHGSITFLDTPGHEAF-----------TAMR 133 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~-~~~~~~~g-iT~~~~~~~~~~~~~~i~~iDTPG~e~f-----------~~~~ 133 (1527)
.+.++|+|+|++|+|||||+++|.+.. +..+..++ +|.+.....+.+++..+.||||||+.++ ....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999887 44444444 7888777788889999999999998654 2333
Q ss_pred HhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCEEEEEE-cccCCcchhHHHHH--------HHhhhcccc
Q psy1758 134 ARGAKVTDIVVLVVAADDGVMPQTREAIAHAKIS-----GVPLIVAIN-KIDKLDINLDRIKQ--------DLISEQVIP 199 (1527)
Q Consensus 134 ~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~-----~vpiIvviN-KiDl~~~~~~~~~~--------~l~~~~~~~ 199 (1527)
..+++.+|++|+|+|++. +..+....+..+... +.|+++++| |+|+...+...... .+.... .
T Consensus 100 ~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~--~ 176 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAAC--G 176 (260)
T ss_dssp HHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT--T
T ss_pred HhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHh--C
Confidence 447789999999999996 666666666665544 568777777 99998644333111 011110 0
Q ss_pred cccCCCCcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 200 EEYGGASPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 200 ~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
..+....+ +++||++|.|++++|+.|....
T Consensus 177 ~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 177 GRICAFNN-RAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp TCEEECCT-TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEecC-cccccccHHHHHHHHHHHHHHH
Confidence 00100112 7899999999999999997654
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.6e-16 Score=179.01 Aligned_cols=167 Identities=14% Similarity=0.079 Sum_probs=118.0
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+|+|++|+|||||+++|++........ ...++|.......+.|+++.++||||||+.++.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKL--------------GSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWK 85 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT--------------TSCCCCCSCEEEEEEETTEEEEEEECCGGGGSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCC--------------CCCceeeeeEEEEEEeCCCEEEEEECcCCCCCC
Confidence 455799999999999999999999764322111 112366666777788999999999999998874
Q ss_pred HH-----------HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHc-----CCccEEEEe-ccCCCCCChhhhHH---
Q psy1758 1000 GE-----------VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL-----GFKPIVVVN-KIDRSNARPEWVVD--- 1059 (1527)
Q Consensus 1000 ~e-----------v~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~-----glp~IvviN-KiD~~~a~~~~v~~--- 1059 (1527)
.. +..+++.+|++|+|+|++. +..++..++..+.+. +.|+++|+| |+|+.+.+....+.
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~ 164 (260)
T 2xtp_A 86 DHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSD 164 (260)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcc
Confidence 32 2225577999999999985 777888888877775 678888888 99998655433221
Q ss_pred --HHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1060 --ATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1060 --~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
++......+..... .+..+++||++|. |+++|++.|.+.++.
T Consensus 165 ~~~~~~~~~~~~~~~~--~~~~~~~SA~~~~----------gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 165 NKALSKLVAACGGRIC--AFNNRAEGSNQDD----------QVKELMDCIEDLLME 208 (260)
T ss_dssp CHHHHHHHHHTTTCEE--ECCTTCCHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCeEE--EecCcccccccHH----------HHHHHHHHHHHHHHh
Confidence 12223333322110 0111678999998 999999999988764
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=9.3e-16 Score=164.47 Aligned_cols=163 Identities=17% Similarity=0.181 Sum_probs=111.9
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+++|++|+|||||+++|+...-... .+...|.+.......+....+.+.||||||+.+|.
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 75 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEF--------------QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH 75 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTT--------------SCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCc--------------CCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh
Confidence 4457899999999999999999986521100 01122333333322232234689999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
..+...++.+|++|+|+|++++.. .....++..+... ++|+++|+||+|+...+. ...+++.+.... .
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~-~~~~~~~~~~~~-------~ 147 (181)
T 2efe_B 76 SLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARK-VTAEDAQTYAQE-------N 147 (181)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC-SCHHHHHHHHHH-------T
T ss_pred hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccccc-CCHHHHHHHHHH-------c
Confidence 999999999999999999987533 2233444444443 788999999999965431 112233332211 2
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.+|++++||++|. |+++++++|.+.++..
T Consensus 148 ~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 148 GLFFMETSAKTAT----------NVKEIFYEIARRLPRV 176 (181)
T ss_dssp TCEEEECCSSSCT----------THHHHHHHHHHTCC--
T ss_pred CCEEEEEECCCCC----------CHHHHHHHHHHHHHhc
Confidence 4579999999998 9999999999988654
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-17 Score=182.10 Aligned_cols=160 Identities=18% Similarity=0.179 Sum_probs=108.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
.+..+|+++|++|+|||||+++|.+..+.....+++ .+.....+..++. .+.||||||+++|..++..+++.+|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 466899999999999999999999877654444433 2322333344443 5679999999999999999999999999
Q ss_pred EEEeCCCCCcHHHH--HHHHHHHHc--CCCEEEEEEcccCCcchhHH-HHH-----HHh--hhcccccccCCCCcEEEee
Q psy1758 145 LVVAADDGVMPQTR--EAIAHAKIS--GVPLIVAINKIDKLDINLDR-IKQ-----DLI--SEQVIPEEYGGASPFISIS 212 (1527)
Q Consensus 145 lVvda~~g~~~qt~--e~i~~~~~~--~vpiIvviNKiDl~~~~~~~-~~~-----~l~--~~~~~~~~~~~~~~v~~iS 212 (1527)
+|+|+++....+.. .++..+... ++|+++|+||+|+.+..... ... ... ........+ +..+++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-GAVKYLECS 185 (204)
Confidence 99999885433322 222233322 78999999999997532100 000 000 000111111 223899999
Q ss_pred ccCCCChhHHHHHHHH
Q psy1758 213 AKTGVGINKLLENISL 228 (1527)
Q Consensus 213 Aktg~gI~eL~~~l~~ 228 (1527)
|++|.|++++++.|..
T Consensus 186 A~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIR 201 (204)
Confidence 9999999999999864
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-16 Score=169.99 Aligned_cols=157 Identities=17% Similarity=0.187 Sum_probs=100.9
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhh-HHHHHHhhccccCEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEA-FTAMRARGAKVTDIV 143 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~-f~~~~~~~~~~aD~~ 143 (1527)
..++|+++|.+|||||||+++|.+... .....++++.+.....+..++. .+.+|||+|++. +..++..+++.+|++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~ 84 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 84 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence 347899999999999999999986432 2233334444444455666665 567899999876 444556677889999
Q ss_pred EEEEeCCCCCcHHHHH-HHHHHH----HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 144 VLVVAADDGVMPQTRE-AIAHAK----ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 144 IlVvda~~g~~~qt~e-~i~~~~----~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
++|+|+++....+... ++..+. ..++|+++|+||+|+............ .....+ .++++++||++|.|
T Consensus 85 i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~----~~a~~~--~~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGR----AXAVVF--DXKFIETSAAVQHN 158 (192)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHH----HHHHHT--TCEEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHH----HHHHHh--CCceEEeccccCCC
Confidence 9999999843222221 222222 247899999999998642111000000 001111 25899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
|+++|+.+....
T Consensus 159 v~~lf~~l~~~~ 170 (192)
T 2cjw_A 159 VKELFEGIVRQV 170 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997543
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.63 E-value=7.9e-16 Score=164.79 Aligned_cols=152 Identities=21% Similarity=0.219 Sum_probs=110.6
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+|+|++|+|||||+++|+...... .....|+|.+.....+.+++..+.+|||||+.++...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 68 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAI---------------VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDE 68 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSC---------------CCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcce---------------eeCCCCceeceeeEEEEECCeEEEEEECCCcccchhH
Confidence 3589999999999999999998652111 1223566666666778888989999999999875432
Q ss_pred H--------HHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcc
Q psy1758 1002 V--------ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA 1070 (1527)
Q Consensus 1002 v--------~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~ 1070 (1527)
. ...++.+|++++|+|++++...+...++..+.+. ++|+++|+||+|+.+...+ .
T Consensus 69 ~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~------------~-- 134 (172)
T 2gj8_A 69 VERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG------------M-- 134 (172)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE------------E--
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhh------------h--
Confidence 2 2357899999999999987655555555555443 6899999999998543210 0
Q ss_pred cccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1071 TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1071 ~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
......|++++||++|. |++++++.|.+.++.
T Consensus 135 -~~~~~~~~~~~SA~~g~----------gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 135 -SEVNGHALIRLSARTGE----------GVDVLRNHLKQSMGF 166 (172)
T ss_dssp -EEETTEEEEECCTTTCT----------THHHHHHHHHHHC--
T ss_pred -hhccCCceEEEeCCCCC----------CHHHHHHHHHHHhhh
Confidence 01124579999999998 999999999988754
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=7.5e-16 Score=167.73 Aligned_cols=163 Identities=17% Similarity=0.190 Sum_probs=116.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
++..+|+++|++|+|||||+++|+..... .......|.+.......+....+.++||||||+.+|.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 86 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFD--------------HNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH 86 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCC--------------TTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCC--------------CCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH
Confidence 45679999999999999999999865211 0112334666555555555566789999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
..+..+++.+|++|+|+|+++....+. ..++..+... ++|+++|+||+|+...+. ...+++...... .
T Consensus 87 ~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~-v~~~~~~~~~~~-------~ 158 (192)
T 2fg5_A 87 SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIRE-VPLKDAKEYAES-------I 158 (192)
T ss_dssp GGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC-SCHHHHHHHHHT-------T
T ss_pred hhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccc-cCHHHHHHHHHH-------c
Confidence 999999999999999999987533222 3333444443 789999999999864221 112333332222 2
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.+|++++||++|. |++++++.|.+.++..
T Consensus 159 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 159 GAIVVETSAKNAI----------NIEELFQGISRQIPPL 187 (192)
T ss_dssp TCEEEECBTTTTB----------SHHHHHHHHHHTCC--
T ss_pred CCEEEEEeCCCCc----------CHHHHHHHHHHHHHhh
Confidence 4689999999998 9999999999988654
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.4e-16 Score=169.82 Aligned_cols=166 Identities=17% Similarity=0.232 Sum_probs=115.1
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCC
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA 996 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~ 996 (1527)
.+.....+|+++|++|+|||||+++|+....... ......|. ....+.+.++.++||||||+.
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~-------------~~~~t~~~----~~~~~~~~~~~~~i~Dt~G~~ 74 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK-------------HITATVGY----NVETFEKGRVAFTVFDMGGAK 74 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC-----------------CCCCCSSE----EEEEEEETTEEEEEEEECCSG
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc-------------ccccccce----eEEEEEeCCEEEEEEECCCCH
Confidence 3455678999999999999999999986522110 00112233 334567889999999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHHc-----------CCccEEEEeccCCCCCChhhhHHHHHHH
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALKL-----------GFKPIVVVNKIDRSNARPEWVVDATFDL 1064 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~~-----------glp~IvviNKiD~~~a~~~~v~~~~~~~ 1064 (1527)
+|...+..+++.+|++|+|+|++++.. .+....+..+... ++|+++|+||+|+..... .+++.+.
T Consensus 75 ~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~ 151 (199)
T 4bas_A 75 KFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT---AAELVEI 151 (199)
T ss_dssp GGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC---HHHHHHH
T ss_pred hHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC---HHHHHHH
Confidence 999988889999999999999998642 2333444444443 899999999999976532 2222222
Q ss_pred HhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1065 FDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1065 ~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
+. +........++++.+||++|. |++++++.|.+.+..
T Consensus 152 ~~-~~~~~~~~~~~~~~~Sa~~g~----------gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 152 LD-LTTLMGDHPFVIFASNGLKGT----------GVHEGFSWLQETASR 189 (199)
T ss_dssp HT-HHHHHTTSCEEEEECBTTTTB----------THHHHHHHHHHHHHH
T ss_pred hc-chhhccCCeeEEEEeeCCCcc----------CHHHHHHHHHHHHHH
Confidence 21 110002245689999999998 999999999887753
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=161.74 Aligned_cols=161 Identities=16% Similarity=0.189 Sum_probs=113.6
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+++|++|+|||||+++|+..... ...+...|.+.......+...++.++||||||+.+|.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 69 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFH--------------EFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH 69 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCC--------------TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCC--------------CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh
Confidence 34578999999999999999999864211 0112334555555544454456789999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
......++.+|++++|+|++++... ....++..+... ++|+++|.||+|+...+.. ..++...... ..
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~-~~~~~~~~~~-------~~ 141 (170)
T 1r2q_A 70 SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAV-DFQEAQSYAD-------DN 141 (170)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS-CHHHHHHHHH-------HT
T ss_pred hhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcccccc-CHHHHHHHHH-------Hc
Confidence 9999999999999999999875322 223333444433 6788899999998643211 1122222221 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.+|++++||++|. |+++++++|.+.++
T Consensus 142 ~~~~~~~Sa~~g~----------gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 142 SLLFMETSAKTSM----------NVNEIFMAIAKKLP 168 (170)
T ss_dssp TCEEEECCTTTCT----------THHHHHHHHHHTSC
T ss_pred CCeEEEEeCCCCC----------CHHHHHHHHHHHHh
Confidence 4679999999998 99999999998875
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=165.24 Aligned_cols=161 Identities=19% Similarity=0.230 Sum_probs=115.2
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCC--
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH-- 995 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh-- 995 (1527)
+....++|+++|++|+|||||+++|+..... ......|.|..... ...+.++.+|||||+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~---------------~~~~~~~~t~~~~~---~~~~~~~~i~Dt~G~~~ 80 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIA---------------FVSKTPGKTRSINF---YLVNSKYYFVDLPGYGY 80 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS---------------CCCSSCCCCCCEEE---EEETTTEEEEECCCBSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccc---------------cccCCCCCccCeEE---EEECCcEEEEECCCCcc
Confidence 3345679999999999999999999876311 11122344443322 223457899999994
Q ss_pred --------CCchHHHHHHHHhc---CEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHHHHH
Q psy1758 996 --------ADFGGEVERILSMV---DNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFD 1063 (1527)
Q Consensus 996 --------~df~~ev~~~l~~a---D~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~~~~ 1063 (1527)
..|...+..+++.+ |++++|+|++.+...+...++..+...++|+++|+||+|+.+.+ .+...+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~ 160 (195)
T 3pqc_A 81 AKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRK 160 (195)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHH
T ss_pred ccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHH
Confidence 33444455555555 99999999999888888888888888899999999999997543 2333344444
Q ss_pred HHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1064 LFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1064 ~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.+... ..+|++++||++|. |++++++++.+.++
T Consensus 161 ~~~~~------~~~~~~~~Sa~~~~----------gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 161 VFSKY------GEYTIIPTSSVTGE----------GISELLDLISTLLK 193 (195)
T ss_dssp HHHSS------CCSCEEECCTTTCT----------THHHHHHHHHHHHC
T ss_pred HHhhc------CCCceEEEecCCCC----------CHHHHHHHHHHHhh
Confidence 33221 13579999999998 99999999998775
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.2e-16 Score=163.55 Aligned_cols=159 Identities=16% Similarity=0.107 Sum_probs=113.4
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..+|+++|++|+|||||+++|+...- .. .. .|+......+.+++..+++|||||+.+|.
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~-------------~~----~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 65 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEV--VT-------------TI----PTIGFNVETVTYKNLKFQVWDLGGLTSIR 65 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSC--CC-------------CC----CCSSEEEEEEEETTEEEEEEEECCCGGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCC--CC-------------cC----CcCccceEEEEECCEEEEEEECCCChhhh
Confidence 3457899999999999999999975421 10 01 12222335577789999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
..+..+++.+|++++|+|++++... .....+..... .++|+++|+||+|+.+... .+++.+.+.... ...
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~--~~~ 140 (171)
T 1upt_A 66 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT---SSEMANSLGLPA--LKD 140 (171)
T ss_dssp GGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTGGG--CTT
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC---HHHHHHHhCchh--ccC
Confidence 8888889999999999999876432 23333433333 4789999999999976532 122222221111 112
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |++++++.+.+.++
T Consensus 141 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 141 RKWQIFKTSATKGT----------GLDEAMEWLVETLK 168 (171)
T ss_dssp SCEEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred CceEEEECcCCCCc----------CHHHHHHHHHHHHh
Confidence 35689999999998 99999999988765
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.62 E-value=9.1e-16 Score=175.46 Aligned_cols=156 Identities=26% Similarity=0.390 Sum_probs=117.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..+|+++|++|+|||||+++|++... .....+|+|+......+.+++..+.||||||+.+|.
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~----------------~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~ 66 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQ----------------YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG 66 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCE----------------EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCC----------------cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccC
Confidence 3457899999999999999999975411 012236899999999999999999999999998876
Q ss_pred H-----HH-HHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCCh-hhhHHHHHHHHhhhcc
Q psy1758 1000 G-----EV-ERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARP-EWVVDATFDLFDKLCA 1070 (1527)
Q Consensus 1000 ~-----ev-~~~l--~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~-~~v~~~~~~~~~~l~~ 1070 (1527)
. .+ ...+ ..+|++++|+|++.. .....++..+.+.++|+++|+||+|+...+. ....+++..
T Consensus 67 ~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~------- 137 (258)
T 3a1s_A 67 YSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQK------- 137 (258)
T ss_dssp SSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHH-------
T ss_pred CCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHH-------
Confidence 4 22 2333 479999999999873 3445566777788999999999999743211 111222222
Q ss_pred cccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1071 TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1071 ~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
.+.+|++++||++|. |+++|++.+.+.++.
T Consensus 138 ---~lg~~vi~~SA~~g~----------gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 138 ---HLGIPVVFTSSVTGE----------GLEELKEKIVEYAQK 167 (258)
T ss_dssp ---HHCSCEEECCTTTCT----------THHHHHHHHHHHHHS
T ss_pred ---HcCCCEEEEEeeCCc----------CHHHHHHHHHHHhhc
Confidence 124689999999998 999999999887653
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=175.85 Aligned_cols=154 Identities=21% Similarity=0.267 Sum_probs=118.0
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH-
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG- 1000 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~- 1000 (1527)
.++|+++|++|+|||||+++|++... .....+|+|++.....+.+++..++||||||+.+|..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 66 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ----------------HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAH 66 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE----------------EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc----------------ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccC
Confidence 57999999999999999999975411 1123468899999999999999999999999998876
Q ss_pred -----HHHHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcC-CccEEEEeccCCCCCC-hhhhHHHHHHHHhhhccc
Q psy1758 1001 -----EVERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLG-FKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 1001 -----ev~~~l--~~aD~ailVVDa~~G~~~qt~~~~~~~~~~g-lp~IvviNKiD~~~a~-~~~v~~~~~~~~~~l~~~ 1071 (1527)
....++ ..+|++++|+|++.+ .+....+..+.+.+ +|+++|+||+|+...+ .....+++.+.
T Consensus 67 ~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~------- 137 (271)
T 3k53_A 67 SIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKE------- 137 (271)
T ss_dssp CHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHH-------
T ss_pred CHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHH-------
Confidence 233333 569999999999874 56667777788888 9999999999964211 01112333222
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
+.+|++++||++|. |++++++.+.+.+..
T Consensus 138 ---lg~~~~~~Sa~~g~----------gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 138 ---LGVPVIPTNAKKGE----------GVEELKRMIALMAEG 166 (271)
T ss_dssp ---HSSCEEECBGGGTB----------THHHHHHHHHHHHHT
T ss_pred ---cCCcEEEEEeCCCC----------CHHHHHHHHHHHHhc
Confidence 24689999999998 999999999887643
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-15 Score=158.94 Aligned_cols=155 Identities=15% Similarity=0.122 Sum_probs=109.8
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|++|+|||||+++|+...- ... .. |+......+.++++.++||||||+.+|...+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~--~~~-------------~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 62 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI--VTT-------------IP----TIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 62 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS--SCC-------------CC----CSSCCEEEEECSSCEEEEEECCCCGGGHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc--Ccc-------------cC----cCceeEEEEEECCEEEEEEEcCCChhhHHHHH
Confidence 799999999999999999986421 100 11 22223345677889999999999999999888
Q ss_pred HHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
.+++.+|++++|+|++++... .....+..... .+.|+++|+||+|+.+... .+++.+.+.... .....+|
T Consensus 63 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~--~~~~~~~ 137 (164)
T 1r8s_A 63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHS--LRHRNWY 137 (164)
T ss_dssp HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGG--CSSCCEE
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC---HHHHHHHhCccc--ccCccEE
Confidence 899999999999999875322 22333333333 2789999999999976432 222332221111 1123568
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
++++||++|. |++++++.+.+.++
T Consensus 138 ~~~~Sa~~~~----------gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 138 IQATCATSGD----------GLYEGLDWLSNQLR 161 (164)
T ss_dssp EEECBTTTTB----------THHHHHHHHHHHC-
T ss_pred EEEcccCCCc----------CHHHHHHHHHHHHh
Confidence 9999999998 99999999988775
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=165.37 Aligned_cols=161 Identities=16% Similarity=0.140 Sum_probs=113.2
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..+|+++|++|+|||||+++|+....... .....|.+ ...+.++++.++||||||+.+|.
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~----~~~~~~~~~~~~l~Dt~G~~~~~ 81 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNED--------------MIPTVGFN----MRKITKGNVTIKLWDIGGQPRFR 81 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCS--------------CCCCCSEE----EEEEEETTEEEEEEEECCSHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCc--------------cCCCCcee----EEEEEeCCEEEEEEECCCCHhHH
Confidence 4567999999999999999999986421100 01112222 33467889999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
..+..+++.+|++|+|+|+++... ......+..+.. .++|+++|+||+|+...... +++.+.+.... ...
T Consensus 82 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~--~~~ 156 (188)
T 1zd9_A 82 SMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE---KELIEKMNLSA--IQD 156 (188)
T ss_dssp TTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGG--CCS
T ss_pred HHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCH---HHHHHHhChhh--hcc
Confidence 999999999999999999987432 222333444332 57899999999999765311 22222221111 112
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
..++++++||++|. |+++++++|.+.+..
T Consensus 157 ~~~~~~~~SA~~g~----------gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 157 REICCYSISCKEKD----------NIDITLQWLIQHSKS 185 (188)
T ss_dssp SCEEEEECCTTTCT----------THHHHHHHHHHTCC-
T ss_pred CCeeEEEEECCCCC----------CHHHHHHHHHHHHHh
Confidence 35689999999998 999999999987753
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-15 Score=161.49 Aligned_cols=151 Identities=25% Similarity=0.330 Sum_probs=106.2
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH--
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG-- 1000 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~-- 1000 (1527)
.+|+++|++|+|||||+++|++.... .+...|+|++.....+.+++..+++|||||+.+|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 67 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVY----------------IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS 67 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSS----------------CC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCee----------------ccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc
Confidence 68999999999999999999854210 112346677777777888899999999999998852
Q ss_pred ----HHHHHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCCh-hhhHHHHHHHHhhhccccc
Q psy1758 1001 ----EVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARP-EWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 1001 ----ev~~~l~--~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~-~~v~~~~~~~~~~l~~~~~ 1073 (1527)
....+++ .+|++++|+|++. ..+....+..+.+.++|+++|.||+|+...+. ....+++.+ .
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~v~D~~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~---~------ 136 (165)
T 2wji_A 68 IDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEK---I------ 136 (165)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEETTC--HHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHH---H------
T ss_pred hhHHHHHHHHhcCCCCEEEEEecCCc--hhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHH---H------
Confidence 2233443 7999999999986 23334455556667999999999999753211 111122221 1
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..+|++++||++|. |++++++.+.+.+
T Consensus 137 -~~~~~~~~SA~~~~----------~v~~l~~~l~~~~ 163 (165)
T 2wji_A 137 -LGVKVVPLSAAKKM----------GIEELKKAISIAV 163 (165)
T ss_dssp -HTSCEEECBGGGTB----------SHHHHHHHHHHHT
T ss_pred -hCCCEEEEEcCCCC----------CHHHHHHHHHHHh
Confidence 23579999999998 9999999998765
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.62 E-value=4e-16 Score=192.01 Aligned_cols=156 Identities=23% Similarity=0.238 Sum_probs=109.3
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
...+|+|+|++|+|||||+|+|++.... ......|+|.+.....+.++++.++||||||+.++..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a---------------~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~ 287 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRA---------------IVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSD 287 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBS---------------CCSCCTTCCHHHHHHEEEETTEEEEECC---------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcc---------------cccCCCCeeEEEEEEEEEECCEEEEEEECCccccchh
Confidence 4467999999999999999999875221 1223356777777777888999999999999988776
Q ss_pred HHHH--------HHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 1001 EVER--------ILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 1001 ev~~--------~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
.++. .+..+|++|+|+|++++...+...++..+. ..|.++|+||+|+...+... . +..+
T Consensus 288 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~---~----~~~~---- 354 (462)
T 3geh_A 288 QVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLIT---S----LEYP---- 354 (462)
T ss_dssp -----------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGST---T----CCCC----
T ss_pred HHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhH---H----HHHh----
Confidence 6554 357899999999999988888777776654 37999999999997643211 0 0011
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 1115 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 1115 (1527)
....|++++||++|. |+++|++.|.+.+....
T Consensus 355 -~~~~~~i~iSAktg~----------Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 355 -ENITQIVHTAAAQKQ----------GIDSLETAILEIVQTGK 386 (462)
T ss_dssp -TTCCCEEEEBTTTTB----------SHHHHHHHHHHHHTTSS
T ss_pred -ccCCcEEEEECCCCC----------CHHHHHHHHHHHHhccC
Confidence 124589999999998 99999999999886543
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-15 Score=161.32 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=112.9
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+++|++|+|||||+++|+... +. ......|.+ ...+.+++..+++|||||+..|.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~--~~-------------~~~~t~g~~----~~~~~~~~~~l~i~Dt~G~~~~~ 74 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASED--IS-------------HITPTQGFN----IKSVQSQGFKLNVWDIGGQRKIR 74 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSC--CE-------------EEEEETTEE----EEEEEETTEEEEEEECSSCGGGH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCC--CC-------------cccCcCCeE----EEEEEECCEEEEEEECCCCHHHH
Confidence 345799999999999999999997541 10 112223433 23566778999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
..+..+++.+|++++|+|+++.... .....+..+.. .++|+++|+||+|+.++.. .+++.+.+.... ...
T Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~--~~~ 149 (181)
T 1fzq_A 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP---ASEIAEGLNLHT--IRD 149 (181)
T ss_dssp HHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC---HHHHHHHTTGGG--CCS
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC---HHHHHHHhCchh--ccC
Confidence 9999999999999999999875322 22333333322 4789999999999976542 223333221111 112
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
..++++++||++|. |++++++++.+.++.
T Consensus 150 ~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 150 RVWQIQSCSALTGE----------GVQDGMNWVCKNVNA 178 (181)
T ss_dssp SCEEEEECCTTTCT----------THHHHHHHHHHTC--
T ss_pred CceEEEEccCCCCC----------CHHHHHHHHHHHHHh
Confidence 34689999999998 999999999987753
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=161.63 Aligned_cols=161 Identities=16% Similarity=0.147 Sum_probs=111.9
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
.+...+|+++|++|+|||||+++|+....... .....|.+.......+......+.||||||+.+|
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 77 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMAD--------------CPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 77 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSS--------------CTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceEEEEEEEEECCeEEEEEEEECCCChHh
Confidence 34568999999999999999999986532111 1112334443333333334568999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
...+..+++.+|++++|+|++++...+.. .++..+.. .++|+++|+||+|+...+. ...+++.+....
T Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~------- 149 (179)
T 1z0f_A 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRD-VTYEEAKQFAEE------- 149 (179)
T ss_dssp CHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC-SCHHHHHHHHHH-------
T ss_pred hhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc-cCHHHHHHHHHH-------
Confidence 99999999999999999999875332222 22333333 4789999999999854321 112233332222
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..++++++||++|. |++++++++.+.+
T Consensus 150 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i 176 (179)
T 1z0f_A 150 NGLLFLEASAKTGE----------NVEDAFLEAAKKI 176 (179)
T ss_dssp TTCEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 24579999999998 9999999998765
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.4e-16 Score=165.20 Aligned_cols=158 Identities=17% Similarity=0.133 Sum_probs=111.1
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
..+..+|+++|++|+|||||+++|+...- .. .....|. ....+.+++..+.||||||+.+|
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~-------------~~~t~~~----~~~~~~~~~~~~~i~Dt~G~~~~ 78 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV--VH-------------TSPTIGS----NVEEIVINNTRFLMWDIGGQESL 78 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC--EE-------------EECCSSS----SCEEEEETTEEEEEEEESSSGGG
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC--Cc-------------cCCcCce----eeEEEEECCEEEEEEECCCCHhH
Confidence 34567999999999999999999986521 10 1111222 23456678899999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
...+..+++.+|++++|+|+++.... .....+..... .++|+++|+||+|+.+... .+++.+.+... ...
T Consensus 79 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~--~~~ 153 (181)
T 2h17_A 79 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT---VAEISQFLKLT--SIK 153 (181)
T ss_dssp TCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGG--GCC
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCC---HHHHHHHhCcc--ccc
Confidence 88888889999999999999986433 33344444443 5789999999999976432 22233222111 112
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
...++++++||++|. |++++++.|.+.
T Consensus 154 ~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~ 180 (181)
T 2h17_A 154 DHQWHIQACCALTGE----------GLCQGLEWMMSR 180 (181)
T ss_dssp SSCEEEEECBTTTTB----------THHHHHHHHHTC
T ss_pred CCceEEEEccCCCCc----------CHHHHHHHHHhh
Confidence 235689999999998 999999998764
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=164.63 Aligned_cols=159 Identities=19% Similarity=0.200 Sum_probs=113.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
+...+|+++|++|+|||||+++|+..... .+..++++.+.....+.+++ +.+.||||||+.+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 77 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYT----------------ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC----------------SCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCC----------------CCCCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 46789999999999999999999864211 11223444455555566666 6799999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|...+..+++.+|++|+|+|+++....+ ....+..+... ++|+++|+||+|+...+... .++......
T Consensus 78 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~------- 149 (196)
T 3tkl_A 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVD-YTTAKEFAD------- 149 (196)
T ss_dssp GCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC-HHHHHHHHH-------
T ss_pred hhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccC-HHHHHHHHH-------
Confidence 9999999999999999999998743222 23333334333 78999999999997553211 112222111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...+|++++||++|. |+++++++|.+.+.
T Consensus 150 ~~~~~~~~~Sa~~g~----------gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 150 SLGIPFLETSAKNAT----------NVEQSFMTMAAEIK 178 (196)
T ss_dssp HTTCCEEEECTTTCT----------THHHHHHHHHHHHH
T ss_pred HcCCcEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 124589999999998 99999999887764
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-15 Score=178.02 Aligned_cols=162 Identities=17% Similarity=0.136 Sum_probs=113.2
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeE--EEEEeCCChhhHHHHHHhhccccCEE
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGS--ITFLDTPGHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~--i~~iDTPG~e~f~~~~~~~~~~aD~~ 143 (1527)
..+.++|+++|++|+|||||++++....+.....+ ++.+.....+..++.. +.||||||++.|..++..+++.+|++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 230 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP-TVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 230 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCC-CSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCC-cccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEE
Confidence 45678999999999999999999998877554444 4444445556666664 55999999999999999999999999
Q ss_pred EEEEeCCCCCcHHHHH--HHHHHHHc--CCCEEEEEEcccCCcchhHH-HHHHHhhhc-------ccccccCCCCcEEEe
Q psy1758 144 VLVVAADDGVMPQTRE--AIAHAKIS--GVPLIVAINKIDKLDINLDR-IKQDLISEQ-------VIPEEYGGASPFISI 211 (1527)
Q Consensus 144 IlVvda~~g~~~qt~e--~i~~~~~~--~vpiIvviNKiDl~~~~~~~-~~~~l~~~~-------~~~~~~~~~~~v~~i 211 (1527)
++|+|+++....+... ++..+... ++|+++|+||+|+.+..... ......... ..... .+..+++++
T Consensus 231 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~ 309 (332)
T 2wkq_A 231 LICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE-IGAVKYLEC 309 (332)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH-TTCSEEEEC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHH-cCCcEEEEe
Confidence 9999999844333221 22333332 89999999999986532110 000000000 00111 122489999
Q ss_pred eccCCCChhHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~ 229 (1527)
||++|.|++++|+.|...
T Consensus 310 Sa~~~~gi~~l~~~l~~~ 327 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRA 327 (332)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHH
Confidence 999999999999999754
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-15 Score=158.88 Aligned_cols=159 Identities=19% Similarity=0.217 Sum_probs=108.7
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|++|+|||||+++|+...... ......|.+.......+......+.||||||+.+|...+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 69 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAE--------------NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLA 69 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCT--------------TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhh
Confidence 589999999999999999998652110 011223444433333333344689999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCCh-hhhH-HHHHHHHhhhcccccccC
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARP-EWVV-DATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~~-~~v~-~~~~~~~~~l~~~~~~~~ 1076 (1527)
...++.+|++++|+|++++...+. ...+..+.. .++|+++|+||+|+..... .++. ++....... ..
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-------~~ 142 (170)
T 1ek0_A 70 PXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEE-------KG 142 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHH-------HT
T ss_pred hhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHH-------cC
Confidence 999999999999999987532222 222333332 3788999999999865321 1111 122221111 23
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+|++++||++|. |++++++.|.+.++
T Consensus 143 ~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 143 LLFFETSAKTGE----------NVNDVFLGIGEKIP 168 (170)
T ss_dssp CEEEECCTTTCT----------THHHHHHHHHTTSC
T ss_pred CEEEEEeCCCCC----------CHHHHHHHHHHHHh
Confidence 579999999998 99999999988775
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.2e-15 Score=161.99 Aligned_cols=159 Identities=17% Similarity=0.141 Sum_probs=108.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..+|+++|++|+|||||+++|+... +.. ... |+......+.+++..++||||||+.+|.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~--~~~-------------~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 87 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGE--IVT-------------TIP----TIGFNVETVEYKNICFTVWDVGGQDKIR 87 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSC--CEE-------------EEE----ETTEEEEEEEETTEEEEEEECC-----C
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCC--ccc-------------cCC----cCceeEEEEEECCEEEEEEECCCCHhHH
Confidence 345789999999999999999997431 110 011 2223345677789999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
..+..+++.+|++++|+|++++..- .....+..... .++|+++|+||+|+.+... .+++.+.+.... ...
T Consensus 88 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~--~~~ 162 (192)
T 2b6h_A 88 PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP---VSELTDKLGLQH--LRS 162 (192)
T ss_dssp TTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGG--CSS
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC---HHHHHHHhCccc--ccC
Confidence 8888999999999999999875322 22333333333 3789999999999976532 223333222111 112
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |+++++++|.+.+.
T Consensus 163 ~~~~~~~~SA~~g~----------gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 163 RTWYVQATCATQGT----------GLYDGLDWLSHELS 190 (192)
T ss_dssp CCEEEEECBTTTTB----------THHHHHHHHHHHTT
T ss_pred CceEEEECcCCCcC----------CHHHHHHHHHHHHh
Confidence 35689999999998 99999999988764
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-15 Score=164.47 Aligned_cols=164 Identities=19% Similarity=0.127 Sum_probs=105.8
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD 997 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d 997 (1527)
..+...+|+++|++|+|||||+++|+...... ......|.+.......+......++||||||+.+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 89 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRE--------------NISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC------------------------CEEEEEEETTEEEEEEEEECTTCTT
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCc--------------cCCCCccceeEEEEEEECCEEEEEEEEECCCCcc
Confidence 34566899999999999999999998652110 0112234444333333433446799999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCC----hhhh-HHHHHHHHhhh
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNAR----PEWV-VDATFDLFDKL 1068 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~----~~~v-~~~~~~~~~~l 1068 (1527)
|...+..+++.+|++|+|+|++++...+. ..++..+.. .++|+++|+||+|+.+.. ...+ .++......
T Consensus 90 ~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~-- 167 (199)
T 2p5s_A 90 FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAM-- 167 (199)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHH--
T ss_pred hhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHH--
Confidence 99999999999999999999987543333 223333333 378999999999985211 0011 111111111
Q ss_pred cccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1069 ~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...+|++++||++|. |++++++.|.+.+.
T Consensus 168 -----~~~~~~~~~SA~~g~----------gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 168 -----TYGALFCETSAKDGS----------NIVEAVLHLAREVK 196 (199)
T ss_dssp -----HHTCEEEECCTTTCT----------THHHHHHHHHHHHT
T ss_pred -----HcCCeEEEeeCCCCC----------CHHHHHHHHHHHHH
Confidence 124579999999998 99999999988764
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.3e-16 Score=165.48 Aligned_cols=160 Identities=19% Similarity=0.180 Sum_probs=112.9
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~ 996 (1527)
.+...+|+++|++|+|||||+++|+..... .+..++++.+.....+.+++ +.++||||||+.
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 69 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFS----------------GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC-------------------CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGG
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCC----------------CccCCCceeEEEEEEEEECCEEEEEEEEcCCCch
Confidence 356789999999999999999999754211 12234455555556667776 789999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
+|......+++.+|++++|+|++++...+.. ..+..+... ++|+++|+||+|+...+... .++.......
T Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~------ 142 (181)
T 3tw8_B 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVE-TEDAYKFAGQ------ 142 (181)
T ss_dssp GCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSC-HHHHHHHHHH------
T ss_pred hhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccC-HHHHHHHHHH------
Confidence 9998888889999999999999885332222 222333332 58999999999986543111 1122221111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |++++++.+.+.+.
T Consensus 143 -~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 143 -MGIQLFETSAKENV----------NVEEMFNCITELVL 170 (181)
T ss_dssp -HTCCEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred -cCCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 23579999999998 99999999988764
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-15 Score=160.01 Aligned_cols=160 Identities=18% Similarity=0.138 Sum_probs=109.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC---eEEEEEeCCCCCC
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG---TRINIIDTPGHAD 997 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~---~~iniiDTPGh~d 997 (1527)
+..+|+++|++|+|||||+++|+..... .......| ++.....+.+.+ ..++||||||+.+
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~--------------~~~~~t~~--~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 68 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFG--------------KQYKQTIG--LDFFLRRITLPGNLNVTLQIWDIGGQTI 68 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTT--------------HHHHHTTT--SSEEEEEEEETTTEEEEEEEEECTTCCT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCC--------------CCCCCcee--EEEEEEEEEeCCCCEEEEEEEECCCCcc
Confidence 4468999999999999999999865211 00111122 223334555655 7899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH-----cCCc-cEEEEeccCCCCCChhhhHHHHHHHHhhhcc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK-----LGFK-PIVVVNKIDRSNARPEWVVDATFDLFDKLCA 1070 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~-----~glp-~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~ 1070 (1527)
|...+..+++.+|++++|+|++++...+ ...++..+.. .+.| +++|+||+|+.+.+.. ..++.......
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~-~~~~~~~~~~~--- 144 (178)
T 2hxs_A 69 GGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTI-KPEKHLRFCQE--- 144 (178)
T ss_dssp TCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSS-CHHHHHHHHHH---
T ss_pred ccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccccccc-CHHHHHHHHHH---
Confidence 9999999999999999999998743222 2233333333 2667 5788999998653210 11222222211
Q ss_pred cccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1071 TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1071 ~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
..+|++++||++|. |++++++.|.+.++..
T Consensus 145 ----~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 145 ----NGFSSHFVSAKTGD----------SVFLCFQKVAAEILGI 174 (178)
T ss_dssp ----HTCEEEEECTTTCT----------THHHHHHHHHHHHTTC
T ss_pred ----cCCcEEEEeCCCCC----------CHHHHHHHHHHHHHhh
Confidence 23579999999998 9999999999887643
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-15 Score=165.15 Aligned_cols=160 Identities=16% Similarity=0.222 Sum_probs=113.6
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..+|+++|++|+|||||+++|+... .... ....|. ....+.++++.++||||||+.+|.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~-------------~~t~~~----~~~~~~~~~~~~~~~Dt~G~~~~~ 76 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VDTI-------------SPTLGF----NIKTLEHRGFKLNIWDVGGQKSLR 76 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CSSC-------------CCCSSE----EEEEEEETTEEEEEEEECCSHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CCcc-------------cccCcc----ceEEEEECCEEEEEEECCCCHhHH
Confidence 355799999999999999999998653 1110 111232 234566788999999999999988
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
..+..+++.+|++++|+|++++.. ......+..... .++|+++|+||+|+.+... .+++.+.+... ....
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~--~~~~ 151 (186)
T 1ksh_A 77 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS---CNAIQEALELD--SIRS 151 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGG--GCCS
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC---HHHHHHHhChh--hccC
Confidence 888888899999999999987532 233334444433 4789999999999976532 22333322111 1112
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
..+|++++||++|. |++++++.+.+.++.
T Consensus 152 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 152 HHWRIQGCSAVTGE----------DLLPGIDWLLDDISS 180 (186)
T ss_dssp SCEEEEECCTTTCT----------THHHHHHHHHHHHHT
T ss_pred CceEEEEeeCCCCC----------CHHHHHHHHHHHHHh
Confidence 35689999999998 999999999887753
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.2e-15 Score=162.99 Aligned_cols=160 Identities=19% Similarity=0.164 Sum_probs=111.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
+...+|+++|++|+|||||+++|+....... .....|++.......+......++||||||+.+|.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 71 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPA--------------FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYR 71 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSC--------------CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC--------------cCCccceeEEEEEEEECCeEEEEEEEECCCchhhc
Confidence 4567999999999999999999986521100 11223455444444444445789999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
..+..+++.+|++|+|+|++++...+ ...++..+.. .+.|+++|+||+|+...+.. ..++....... .
T Consensus 72 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~-------~ 143 (203)
T 1zbd_A 72 TITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVV-SSERGRQLADH-------L 143 (203)
T ss_dssp HHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCS-CHHHHHHHHHH-------H
T ss_pred chHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCccccc-CHHHHHHHHHH-------C
Confidence 99999999999999999998743222 2233334443 37899999999999754311 11222222211 2
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+|++++||++|. |+++++++|.+.+
T Consensus 144 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i 169 (203)
T 1zbd_A 144 GFEFFEASAKDNI----------NVKQTFERLVDVI 169 (203)
T ss_dssp TCEEEECBTTTTB----------SSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 3579999999998 9999998887765
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-15 Score=160.28 Aligned_cols=160 Identities=19% Similarity=0.204 Sum_probs=102.9
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
+...+|+++|++|+|||||+++|+....... +..+.++.......+.+++ +.++||||||+.+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 72 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG---------------TFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER 72 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCC---------------CCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCC---------------CcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 4567999999999999999999986532110 1112222233333344444 5899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|...+..+++.+|++++|+|++++...+. ...+..+.. .++|+++|+||+|+...+.. ..++.......
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~------ 145 (180)
T 2g6b_A 73 FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVV-KREDGEKLAKE------ 145 (180)
T ss_dssp ------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCS-CHHHHHHHHHH------
T ss_pred HHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCccccc-CHHHHHHHHHH------
Confidence 99888888999999999999987432222 233333433 57899999999999754311 11222222211
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |++++++++.+.+.
T Consensus 146 -~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 146 -YGLPFMETSAKTGL----------NVDLAFTAIAKELK 173 (180)
T ss_dssp -HTCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred -cCCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 23579999999998 99999999988764
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-15 Score=163.83 Aligned_cols=161 Identities=14% Similarity=0.110 Sum_probs=112.4
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..+|+++|++|+|||||+++|+........ ...|+......+.+++..+.||||||+.+|.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-----------------ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYR 81 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-----------------CCCCSSEEEEEEECSSCEEEEEEECCSTTTG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------------cCCccceeEEEEEECCEEEEEEECCCCHHHH
Confidence 44579999999999999999999765211110 1123333345677788999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
..+..+++.+|++|+|+|++++.. ......+..+.. .++|+++|+||+|+.+... .+++.+.+. +. ..
T Consensus 82 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~-~~-~~ 156 (190)
T 2h57_A 82 NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVT---SVKVSQLLC-LE-NI 156 (190)
T ss_dssp GGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCC---HHHHHHHHT-GG-GC
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCC---HHHHHHHhC-hh-hc
Confidence 988889999999999999987421 222233444433 4789999999999976432 223333221 11 11
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
....++++++||++|. |++++++.|.+.+.
T Consensus 157 ~~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 157 KDKPWHICASDAIKGE----------GLQEGVDWLQDQIQ 186 (190)
T ss_dssp CSSCEEEEECBTTTTB----------THHHHHHHHHHHC-
T ss_pred cCCceEEEEccCCCCc----------CHHHHHHHHHHHHH
Confidence 1235689999999998 99999999988763
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-15 Score=157.51 Aligned_cols=161 Identities=18% Similarity=0.200 Sum_probs=113.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..+|+++|++|+|||||+++|+..... .......|.+.......+......+.||||||+.+|.
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 69 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFD--------------PNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR 69 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCC--------------TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCC--------------CCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh
Confidence 34579999999999999999999865211 0112334555554444444445789999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
......++.+|++++|+|++++...+. ..++..+... ++|+++|+||+|+...+. ...++...... ..
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~-v~~~~~~~~~~-------~~ 141 (170)
T 1z0j_A 70 ALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVRE-VMERDAKDYAD-------SI 141 (170)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCC-SCHHHHHHHHH-------HT
T ss_pred cccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccc-cCHHHHHHHHH-------Hc
Confidence 999999999999999999987543333 2333444443 577888899999864321 01122222111 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.+|++++||++|. |++++++.|.+.++
T Consensus 142 ~~~~~~~Sa~~~~----------~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 142 HAIFVETSAKNAI----------NINELFIEISRRIP 168 (170)
T ss_dssp TCEEEECBTTTTB----------SHHHHHHHHHHHCC
T ss_pred CCEEEEEeCCCCc----------CHHHHHHHHHHHHh
Confidence 4679999999998 99999999998875
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-15 Score=158.63 Aligned_cols=159 Identities=21% Similarity=0.211 Sum_probs=109.4
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
....+|+++|++|+|||||+++|+...... +..+.++.......+.+++ ..+.||||||+.+
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDT----------------QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 68 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC--------------------CCSEEEEEEEEEETTEEEEEEEEECCCCGG
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh
Confidence 456799999999999999999998652110 1112222333334455555 5899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH-------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK-------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC 1069 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~-------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~ 1069 (1527)
|...+...++.+|++++|+|++++...+.. ..+..+.. .++|+++|+||+|+.... ...+++......
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~--~~~~~~~~~~~~-- 144 (177)
T 1wms_A 69 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ--VSTEEAQAWCRD-- 144 (177)
T ss_dssp GHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS--SCHHHHHHHHHH--
T ss_pred hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc--cCHHHHHHHHHh--
Confidence 999888889999999999999875332222 22222222 578999999999986322 112233332211
Q ss_pred ccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1070 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1070 ~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...+|++++||++|. |++++++.+.+.+.
T Consensus 145 ----~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 145 ----NGDYPYFETSAKDAT----------NVAAAFEEAVRRVL 173 (177)
T ss_dssp ----TTCCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred ----cCCceEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 124579999999998 99999999988764
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-15 Score=165.46 Aligned_cols=158 Identities=17% Similarity=0.212 Sum_probs=106.2
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|++|+|||||+++|.... +.. .. .|+......+.+++..+++|||||+.+|...
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~--~~~-------------~~----~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 85 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDR--LGQ-------------HV----PTLHPTSEELTIAGMTFTTFDLGGHIQARRV 85 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-------------------------CCCCCSCEEEEETTEEEEEEEECC----CCG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC--CCc-------------cC----CCCCceeEEEEECCEEEEEEECCCcHhhHHH
Confidence 3589999999999999999997531 110 01 1222334567788899999999999999888
Q ss_pred HHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcc------
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA------ 1070 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~------ 1070 (1527)
+..+++.+|++++|+|++++.. ......+..+.+ .++|+++|+||+|+.++.. .+++.+.+.....
T Consensus 86 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~ 162 (198)
T 1f6b_A 86 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAIS---EERLREMFGLYGQTTGKGS 162 (198)
T ss_dssp GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCC---HHHHHHHHTCTTTCCCSSC
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCC---HHHHHHHhCcccccccccc
Confidence 7888999999999999987532 223333444432 4789999999999976322 2333433322110
Q ss_pred ----cccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1071 ----TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1071 ----~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
......++++++||++|. |++++++++.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~SA~~g~----------gv~~l~~~l~~~l 197 (198)
T 1f6b_A 163 VSLKELNARPLEVFMCSVLKRQ----------GYGEGFRWMAQYI 197 (198)
T ss_dssp CCTTTCCSCCEEEEECBTTTTB----------SHHHHHHHHHTTC
T ss_pred cccccccCceEEEEEEECCCCC----------CHHHHHHHHHHhc
Confidence 000134689999999998 9999999998754
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-15 Score=162.46 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=79.4
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH-cCCccEEEEeccCCCCCChhhhHHHHH
Q psy1758 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK-LGFKPIVVVNKIDRSNARPEWVVDATF 1062 (1527)
Q Consensus 985 ~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~-~glp~IvviNKiD~~~a~~~~v~~~~~ 1062 (1527)
..++||||||+.+|...+..+++.+|++|+|+|++++...+. ..++..+.. .+.|+++|+||+|.... +...+++.
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~--~~~~~~~~ 170 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKF--QVDILEVQ 170 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-C--CSCHHHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccc--cCCHHHHH
Confidence 789999999999999999999999999999999988543333 223333333 57899999999993221 11233444
Q ss_pred HHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1063 DLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1063 ~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..... ..+|++++||++|. |+++++++|.+.+
T Consensus 171 ~~~~~-------~~~~~~~~Sa~~~~----------~i~~l~~~l~~~~ 202 (208)
T 3clv_A 171 KYAQD-------NNLLFIQTSAKTGT----------NIKNIFYMLAEEI 202 (208)
T ss_dssp HHHHH-------TTCEEEEECTTTCT----------THHHHHHHHHHHH
T ss_pred HHHHH-------cCCcEEEEecCCCC----------CHHHHHHHHHHHH
Confidence 33322 24589999999998 9999999988765
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-15 Score=162.09 Aligned_cols=160 Identities=18% Similarity=0.203 Sum_probs=108.6
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~ 996 (1527)
.+...+|+++|++|+|||||+++|+...... ......|.+ .....+.+++ +.+.||||||+.
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~--------------~~~~t~~~~--~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCE--------------ACKSTVGVD--FKIKTVELRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC----------------------CCTTEE--EEEEEEEETTEEEEEEEEEECCSG
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCc--------------CCCCcccee--EEEEEEEECCeEEEEEEEeCCCcH
Confidence 4556799999999999999999997542110 011122333 3334455554 689999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
+|...+..+++.+|++|+|+|++++...+.. .++..+.. .++|+++|+||+|+...+.. ..++.......+
T Consensus 87 ~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v-~~~~~~~~~~~~---- 161 (192)
T 2il1_A 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREI-TRQQGEKFAQQI---- 161 (192)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS-CHHHHHHHHHTS----
T ss_pred HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccc-CHHHHHHHHHhc----
Confidence 9999999999999999999999875433332 22233333 37899999999998643210 112222221111
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..++++.+||++|. |++++++.|.+.+
T Consensus 162 --~~~~~~~~SA~~g~----------gi~~l~~~l~~~i 188 (192)
T 2il1_A 162 --TGMRFCEASAKDNF----------NVDEIFLKLVDDI 188 (192)
T ss_dssp --TTCEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred --CCCeEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 14579999999998 9999999998765
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-15 Score=162.61 Aligned_cols=159 Identities=19% Similarity=0.164 Sum_probs=87.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
+...+|+++|++|+|||||+++|+..... .+..++++.+.....+.+++ +.++||||||+.+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFN----------------STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69 (183)
T ss_dssp SEEEEEEEECCCCC--------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC----------------CCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh
Confidence 45679999999999999999999754110 11123344444444555665 7899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|.......++.+|++|+|+|+++... .....++..+.. .++|+++|+||+|+.+.+.. ..+++......
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~~------ 142 (183)
T 2fu5_C 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQV-SKERGEKLALD------ 142 (183)
T ss_dssp ----CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCS-CHHHHHHHHHH------
T ss_pred hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcC-CHHHHHHHHHH------
Confidence 98888888899999999999987432 222333344444 37899999999999754311 12222222211
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |++++++.+.+.+.
T Consensus 143 -~~~~~~~~Sa~~~~----------~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 143 -YGIKFMETSAKANI----------NVENAFFTLARDIK 170 (183)
T ss_dssp -HTCEEEECCC---C----------CHHHHHHHHHHHHH
T ss_pred -cCCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 24579999999998 99999999987764
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-15 Score=161.59 Aligned_cols=156 Identities=24% Similarity=0.301 Sum_probs=114.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
+..+|+++|++|+|||||+++|+.... ..+...|+|++.....+.+++..+++|||||+.+|..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 69 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENV----------------YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTA 69 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCE----------------EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc----------------cccCCCCeeccceEEEEEeCCcEEEEEECCCcCcccc
Confidence 457899999999999999999985410 1123357788777888889999999999999998852
Q ss_pred ------HHHHHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHHHHHHHhhhccc
Q psy1758 1001 ------EVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 1001 ------ev~~~l~--~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~~~~~~~~l~~~ 1071 (1527)
....++. .+|++++|+|++. ..+...++..+...+.|+++|.||+|+...+ .....+++.+ .
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~---- 140 (188)
T 2wjg_A 70 NSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEK---I---- 140 (188)
T ss_dssp SSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHH---H----
T ss_pred ccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHH---H----
Confidence 2333443 4999999999975 3444555666677899999999999985321 1111222222 1
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
..+|++++||++|. |++++++.+.+.++..
T Consensus 141 ---~~~~~~~~Sa~~~~----------~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 141 ---LGVKVVPLSAAKKM----------GIEELKKAISIAVKDK 170 (188)
T ss_dssp ---HTSCEEECBGGGTB----------SHHHHHHHHHHHHTTC
T ss_pred ---hCCCeEEEEecCCC----------CHHHHHHHHHHHHHhc
Confidence 23579999999998 9999999999888643
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-15 Score=159.21 Aligned_cols=159 Identities=21% Similarity=0.192 Sum_probs=110.0
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df 998 (1527)
+..+|+++|++|+|||||+++|+...... +..+.++++.....+.+++ +.+.||||||+.+|
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~ 76 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDN----------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 76 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCS----------------SCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHH
Confidence 34789999999999999999998542111 1112333334444455555 58999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
...+..+++.+|++++|+|+++.... .....+..+.. .++|+++|+||+|+.+.+.. ..++.......
T Consensus 77 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~------- 148 (179)
T 2y8e_A 77 RSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV-STEEGERKAKE------- 148 (179)
T ss_dssp GGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCS-CHHHHHHHHHH-------
T ss_pred HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcC-CHHHHHHHHHH-------
Confidence 99999999999999999999874221 22233333332 47899999999998643211 11222222211
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
..+|++.+||++|. |++++++.|.+.++.
T Consensus 149 ~~~~~~~~Sa~~~~----------~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 149 LNVMFIETSAKAGY----------NVKQLFRRVAAALPG 177 (179)
T ss_dssp HTCEEEEEBTTTTB----------SHHHHHHHHHHTCC-
T ss_pred cCCeEEEEeCCCCC----------CHHHHHHHHHHHHhh
Confidence 23579999999998 999999999988753
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-15 Score=165.63 Aligned_cols=159 Identities=19% Similarity=0.189 Sum_probs=109.9
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~ 996 (1527)
.....+|+++|++|+|||||+++|+..... .+..+.++.+.....+.+++ +.+.||||||+.
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFN----------------PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCC----------------CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGG
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCC----------------cccCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 345679999999999999999999854211 01112333334445566666 689999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
+|...+..+++.+|++|+|+|++++...+ ...++..+... ++|+++|+||+|+..... ..++.......
T Consensus 81 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~----- 153 (213)
T 3cph_A 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVV--TADQGEALAKE----- 153 (213)
T ss_dssp GGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCS--CHHHHHHHHHH-----
T ss_pred HHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc--CHHHHHHHHHH-----
Confidence 99988889999999999999998743222 23333444432 789999999999843221 12222222211
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |+++++++|.+.++
T Consensus 154 --~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 154 --LGIPFIESSAKNDD----------NVNEIFFTLAKLIQ 181 (213)
T ss_dssp --HTCCEEECBTTTTB----------SSHHHHHHHHHHHH
T ss_pred --cCCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 23589999999998 99999999987764
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-15 Score=162.83 Aligned_cols=162 Identities=20% Similarity=0.170 Sum_probs=113.2
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
.+...+|+++|++|+|||||+++|+....... .....|.+.......+....+.++||||||+.+|
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 84 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPA--------------FVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERY 84 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCS--------------CCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSS
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCC--------------cCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHH
Confidence 34568999999999999999999986521100 1122345554444444444578999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
...+..+++.+|++|+|+|++++... ....++..+... ++|+++|+||+|+...+.. ..+++......
T Consensus 85 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~------- 156 (189)
T 2gf9_A 85 RTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVV-PAEDGRRLADD------- 156 (189)
T ss_dssp CCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS-CHHHHHHHHHH-------
T ss_pred hhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCC-CHHHHHHHHHH-------
Confidence 98888899999999999999874322 223344444443 7899999999998643211 11222222222
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..++++++||++|. |++++++.|.+.++
T Consensus 157 ~~~~~~~~Sa~~g~----------gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 157 LGFEFFEASAKENI----------NVKQVFERLVDVIC 184 (189)
T ss_dssp HTCEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 23579999999998 99999999987764
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=6.2e-15 Score=156.13 Aligned_cols=160 Identities=17% Similarity=0.108 Sum_probs=107.4
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|++|+|||||+++|+......... ...+.+.. ....+....+.+.||||||+.+|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--------------~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~ 67 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYI--------------PTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAM 67 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCC--------------CCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------------CCccccEE-EEEEECCEEEEEEEEECCCchhhHHH
Confidence 3589999999999999999998642111100 01111111 11222223467999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH-----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~-----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
...+++.+|++++|+|+++... .+....+..+.+ .++|+++|+||+|+...+.. ...+...... ..
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v-~~~~~~~~~~-------~~ 139 (172)
T 2erx_A 68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREV-QSSEAEALAR-------TW 139 (172)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCS-CHHHHHHHHH-------HH
T ss_pred HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccccccc-CHHHHHHHHH-------Hh
Confidence 9999999999999999986422 223344444443 37899999999998643211 0111111111 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.+|++++||++|. |+++++++|.+.+..+
T Consensus 140 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 140 KCAFMETSAKLNH----------NVKELFQELLNLEKRR 168 (172)
T ss_dssp TCEEEECBTTTTB----------SHHHHHHHHHHTCCSS
T ss_pred CCeEEEecCCCCc----------CHHHHHHHHHHHHhhh
Confidence 3579999999998 9999999999887654
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-15 Score=159.29 Aligned_cols=156 Identities=20% Similarity=0.198 Sum_probs=107.1
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCch
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~ 999 (1527)
..+|+++|++|+|||||+++|+...-.. +..+.++.+.....+.+++ +.+.||||||+.+|.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 66 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP----------------SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFR 66 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-----------------------CCEEEEEEESSSCEEEEEEECCTTGGGTS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC----------------CCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhh
Confidence 4689999999999999999998652110 1112233333334455554 578999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
..+...++.+|++++|+|++++...+ ....+..+.. .++|+++|+||+|+..... ..++....... .
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~-------~ 137 (170)
T 1g16_A 67 TITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVV--TADQGEALAKE-------L 137 (170)
T ss_dssp CCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCS--CHHHHHHHHHH-------H
T ss_pred hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCcc--CHHHHHHHHHH-------c
Confidence 88889999999999999998743222 2333344443 3789999999999944221 12222222211 2
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.+|++++||++|. |++++++.+.+.++
T Consensus 138 ~~~~~~~Sa~~~~----------gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 138 GIPFIESSAKNDD----------NVNEIFFTLAKLIQ 164 (170)
T ss_dssp TCCEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 3589999999998 99999999988764
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.5e-15 Score=158.05 Aligned_cols=159 Identities=17% Similarity=0.179 Sum_probs=100.3
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC--c
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD--F 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d--f 998 (1527)
...+|+++|++|+|||||+++|+..... ......|.+.......+....+.+++|||||+.. +
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 67 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQER---------------DLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDK 67 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC--------------------CCCSSSSEEEEEEEETTEEEEEEEECCC-------
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCc---------------cccCccccceeEEEEEECCEEEEEEEEecCCCCccch
Confidence 3468999999999999999999854211 1112245554443333322335789999999988 4
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHHc----CCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALKL----GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~~----glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
.......++.+|++++|+|+++.... ....++..+... ++|+++|+||+|+.+.+.- ..++......
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v-~~~~~~~~~~------- 139 (175)
T 2nzj_A 68 SWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREV-SVEEGRACAV------- 139 (175)
T ss_dssp CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCS-CHHHHHHHHH-------
T ss_pred hhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcccccc-CHHHHHHHHH-------
Confidence 44445567889999999999863221 223334444443 7899999999999754311 1122222111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...+|++++||++|. |++++++.|.+.+.
T Consensus 140 ~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 140 VFDCKFIETSATLQH----------NVAELFEGVVRQLR 168 (175)
T ss_dssp HHTSEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred HcCCeEEEEecCCCC----------CHHHHHHHHHHHHH
Confidence 124579999999998 99999999988764
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.2e-15 Score=158.52 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=103.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df 998 (1527)
...+|+++|++|+|||||+++|+........ .+++.......+.+++ +.++||||||+.+|
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 65 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEY-----------------DPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCC-----------------CTTCCEEEEEEEEETTEEEEEEEEECCCC---
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------------CCCchheEEEEEEECCcEEEEEEEECCCcHHH
Confidence 3468999999999999999999865321111 1111111222333444 45888999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCccEEEEeccCCCCCC-hhhhHHHHHHHHhhhcccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~----~glp~IvviNKiD~~~a~-~~~v~~~~~~~~~~l~~~~ 1072 (1527)
......+++.+|++++|+|+++....+. ...+..+.. .++|+++|+||+|+.... ..+...++.. .
T Consensus 66 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~---~----- 137 (189)
T 4dsu_A 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR---S----- 137 (189)
T ss_dssp CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH---H-----
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH---H-----
Confidence 9999999999999999999987422222 223333333 378999999999997543 1222222221 1
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |++++++++.+.+.
T Consensus 138 --~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 138 --YGIPFIETSAKTRQ----------GVDDAFYTLVREIR 165 (189)
T ss_dssp --HTCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred --cCCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 23579999999998 99999999988764
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=3e-15 Score=162.92 Aligned_cols=158 Identities=19% Similarity=0.188 Sum_probs=111.0
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|++|+|||||+++|....- .. ...|+......+.++++.+++|||||+.+|...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~--~~-----------------~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 83 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRL--AT-----------------LQPTWHPTSEELAIGNIKFTTFDLGGHIQARRL 83 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCC--CC-----------------CCCCCSCEEEEEEETTEEEEEEECCCSGGGTTS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCC--Cc-----------------cccCCCCCeEEEEECCEEEEEEECCCCHHHHHH
Confidence 35899999999999999999986421 10 112233334567788999999999999998887
Q ss_pred HHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc-----
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT----- 1071 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~----- 1071 (1527)
...+++.+|++++|+|++++..- .....+..... .++|+++|+||+|+..... .+++.+.+......
T Consensus 84 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~ 160 (190)
T 1m2o_B 84 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS---EAELRSALGLLNTTGSQRI 160 (190)
T ss_dssp GGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC---HHHHHHHTTCSSCCC---C
T ss_pred HHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCC---HHHHHHHhCCccccccccc
Confidence 77788999999999999975422 23333333332 5789999999999976322 23344333221100
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.....++++++||++|. |++++++.+.+.+
T Consensus 161 ~~~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~l 190 (190)
T 1m2o_B 161 EGQRPVEVFMCSVVMRN----------GYLEAFQWLSQYI 190 (190)
T ss_dssp CSSCCEEEEECBTTTTB----------SHHHHHHHHHTTC
T ss_pred cccceEEEEEeECCcCC----------CHHHHHHHHHhhC
Confidence 11234689999999998 9999999997653
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-15 Score=161.80 Aligned_cols=159 Identities=19% Similarity=0.177 Sum_probs=110.4
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
+...+|+++|++|+|||||+++|+...... +....++.+.....+.+++ ..+.||||||+.+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 71 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD----------------DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT----------------TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 456799999999999999999998652211 1112233333344455555 6899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHH---HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKAL---KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~---~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|...+..+++.+|++|+|+|++++...+.. ..+..+. ..++|+++|+||+|+...+.. ..++......
T Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~------- 143 (186)
T 2bme_A 72 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREV-TFLEASRFAQ------- 143 (186)
T ss_dssp GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS-CHHHHHHHHH-------
T ss_pred HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccc-CHHHHHHHHH-------
Confidence 999998999999999999999874332222 2222222 247899999999998543211 1122222211
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...+|++.+||++|. |++++++.+.+.+.
T Consensus 144 ~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 144 ENELMFLETSALTGE----------NVEEAFVQCARKIL 172 (186)
T ss_dssp HTTCEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HcCCEEEEecCCCCC----------CHHHHHHHHHHHHH
Confidence 124689999999998 99999999887664
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-15 Score=157.35 Aligned_cols=156 Identities=17% Similarity=0.108 Sum_probs=90.2
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|++|+|||||+++|+..... ......|.|.. ....+......+.+|||||+.+|...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~---------------~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~ 65 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG---------------PEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWL 65 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-------------------------CEEE-EEEEETTEEEEEEEEECC--------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc---------------CCCCccccceE-EEEEECCEEEEEEEEECCCCccchhh
Confidence 358999999999999999999743110 11122344442 22233334567899999999999998
Q ss_pred HHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
....++.+|++++|+|+++... ......+..+.. .++|+++|+||+|+.+.+.. ..++...... ...
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~ 137 (166)
T 3q72_A 66 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREV-SVDEGRACAV-------VFD 137 (166)
T ss_dssp -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCS-CHHHHHHHHH-------HTT
T ss_pred hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccccccc-CHHHHHHHHH-------HhC
Confidence 8899999999999999986422 122333444443 37899999999999754311 1111111111 123
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+|++++||++|. |++++++.+.+.+
T Consensus 138 ~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 162 (166)
T 3q72_A 138 CKFIETSAALHH----------NVQALFEGVVRQI 162 (166)
T ss_dssp CEEEECBGGGTB----------SHHHHHHHHHHHH
T ss_pred CcEEEeccCCCC----------CHHHHHHHHHHHH
Confidence 589999999998 9999999998765
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.58 E-value=6.8e-15 Score=162.82 Aligned_cols=166 Identities=20% Similarity=0.227 Sum_probs=105.1
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec---CeEEEEEeCCCCCC
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---GTRINIIDTPGHAD 997 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---~~~iniiDTPGh~d 997 (1527)
+..+|+++|++|+|||||+++|+.... ... ..|+......+.++ ++.++||||||+.+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~-----------------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 66 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY--RDT-----------------QTSITDSSAIYKVNNNRGNSLTLIDLPGHES 66 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC--CCB-----------------CCCCSCEEEEEECSSTTCCEEEEEECCCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--ccc-----------------cCCcceeeEEEEecCCCccEEEEEECCCChh
Confidence 457899999999999999999986531 100 01111122235555 67899999999999
Q ss_pred chH-HHHHHHHhcCEEEEEEeCCCCCChhHHH---HHHHHH------HcCCccEEEEeccCCCCCC-hhhhHHHHHHHHh
Q psy1758 998 FGG-EVERILSMVDNVLLLIDAVEGPMPQTRF---VTRKAL------KLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFD 1066 (1527)
Q Consensus 998 f~~-ev~~~l~~aD~ailVVDa~~G~~~qt~~---~~~~~~------~~glp~IvviNKiD~~~a~-~~~v~~~~~~~~~ 1066 (1527)
|.. .+..+++.+|++|+|+|+++ ...+... .|.... ..++|+++|+||+|+...+ .+...+.+.+.+.
T Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~ 145 (214)
T 2fh5_B 67 LRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELN 145 (214)
T ss_dssp HHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHH
Confidence 988 56667899999999999986 2222222 232221 2368999999999997653 4455555554443
Q ss_pred h---------------------hccc-----cccc--CCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1067 K---------------------LCAT-----EEQL--DFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1067 ~---------------------l~~~-----~~~~--~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
. +... ...+ .++++.+||++|.+.. ...|+++++++|.+.
T Consensus 146 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~----~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 146 TLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDT----GSADIQDLEKWLAKI 213 (214)
T ss_dssp HHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-----------CCBCHHHHHHHHHH
T ss_pred HHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccc----cccChHHHHHHHHHh
Confidence 1 0100 0011 5679999999992110 111999999999765
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-15 Score=162.01 Aligned_cols=159 Identities=14% Similarity=0.168 Sum_probs=108.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..+|+++|++|+|||||+++|+... +.. .....| .....+.+++..+++|||||+.+|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~~-------------~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~ 76 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGE--VVT-------------TKPTIG----FNVETLSYKNLKLNVWDLGGQTSIR 76 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSE--EEE-------------ECSSTT----CCEEEEEETTEEEEEEEEC----CC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC--cCc-------------cCCcCc----cceEEEEECCEEEEEEECCCCHhHH
Confidence 456799999999999999999997431 110 011122 2234566788999999999999998
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
..+..+++.+|++++|+|++++... .....+..... .+.|+++|+||+|+.+... .+++.+.+.... ...
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~i~~~~~~~~--~~~ 151 (183)
T 1moz_A 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS---ASEVSKELNLVE--LKD 151 (183)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC---HHHHHHHTTTTT--CCS
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCC---HHHHHHHhCccc--ccC
Confidence 8888889999999999999876432 23334444432 5789999999999976432 223333222111 112
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |++++++++.+.++
T Consensus 152 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 152 RSWSIVASSAIKGE----------GITEGLDWLIDVIK 179 (183)
T ss_dssp SCEEEEEEBGGGTB----------THHHHHHHHHHHHH
T ss_pred CceEEEEccCCCCc----------CHHHHHHHHHHHHH
Confidence 34689999999998 99999999988764
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-15 Score=167.79 Aligned_cols=159 Identities=15% Similarity=0.179 Sum_probs=116.0
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+++|++|+|||||+++|+.... ........|+|.......+...++.++||||||+.+|.
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 78 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEF--------------EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFG 78 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHH--------------TCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCC--------------CCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHh
Confidence 4557899999999999999999764310 01122345777777777776677899999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
.....+++.+|++|+|+|++++...+....| ..+... ++|+++|+||+|+.+........++. ....
T Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~----------~~~~ 148 (221)
T 3gj0_A 79 GLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFH----------RKKN 148 (221)
T ss_dssp CCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHH----------HHHT
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHH----------HHcC
Confidence 8888999999999999999975433332223 333332 88999999999997654221111111 1124
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
++++.+||++|. |+++++++|.+.+.
T Consensus 149 ~~~~~~Sa~~~~----------gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 149 LQYYDISAKSNY----------NFEKPFLWLARKLI 174 (221)
T ss_dssp CEEEECBGGGTB----------TTTHHHHHHHHHHH
T ss_pred CEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 679999999998 99999999988764
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.3e-15 Score=159.48 Aligned_cols=161 Identities=19% Similarity=0.156 Sum_probs=108.8
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec-----------CeEE
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN-----------GTRI 987 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-----------~~~i 987 (1527)
.+...+|+++|++|+|||||+++|+.....-.. ....|.+... ...+.+. ...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 72 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKF--------------ITTVGIDFRE-KRVVYRANGPDGAVGRGQRIHL 72 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--------------CCCCSEEEEE-EEEEECTTSCCCSSCCCEEEEE
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCc--------------ccccceeeee-EEEEEecCCcccccccCcEEEE
Confidence 355689999999999999999999864211000 0111222110 1223333 3689
Q ss_pred EEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHH
Q psy1758 988 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATF 1062 (1527)
Q Consensus 988 niiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~ 1062 (1527)
+||||||+.+|...+..+++.+|++|+|+|++++...+. ...+..+.. .++|+++|+||+|+...+. ...+++.
T Consensus 73 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~ 151 (195)
T 3bc1_A 73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRA-VKEEEAR 151 (195)
T ss_dssp EEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCC-SCHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccc-cCHHHHH
Confidence 999999999999999999999999999999987533332 333333333 5789999999999864321 1122222
Q ss_pred HHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1063 DLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1063 ~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..... ..+|++++||++|. |++++++.|.+.+.
T Consensus 152 ~~~~~-------~~~~~~~~Sa~~~~----------~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 152 ELAEK-------YGIPYFETSAANGT----------NISHAIEMLLDLIM 184 (195)
T ss_dssp HHHHH-------HTCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HHHHH-------cCCCEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 22222 23579999999998 99999999887653
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=7.9e-15 Score=157.74 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=105.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
....+|+++|++|+|||||+++|+......... ...+.+. ...+.+++ +.++||||||+.+
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~--------------~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~ 78 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYD--------------PTIEDSY---LKHTEIDNQWAILDVLDTAGQEE 78 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCC--------------TTCCEEE---EEEEEETTEEEEEEEEECCSCGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------------CCcccee---EEEEEeCCcEEEEEEEECCCchh
Confidence 345799999999999999999998542111100 0111221 22233343 4677899999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHH----HHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKA----LKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~----~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
|......+++.+|++++|+|++++...+ ....+..+ ...++|+++|+||+|+.+.+. ...++.......
T Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-v~~~~~~~~~~~----- 152 (183)
T 3kkq_A 79 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK-VTRDQGKEMATK----- 152 (183)
T ss_dssp GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC-SCHHHHHHHHHH-----
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccC-cCHHHHHHHHHH-----
Confidence 9999999999999999999998742221 12222222 235789999999999865321 111222222222
Q ss_pred cccCCcEEEeccc-cCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1073 EQLDFPVIYTSAL-HGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~-~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..+|++++||+ +|. |++++++.|.+.+
T Consensus 153 --~~~~~~~~Sa~~~~~----------~v~~l~~~l~~~i 180 (183)
T 3kkq_A 153 --YNIPYIETSAKDPPL----------NVDKTFHDLVRVI 180 (183)
T ss_dssp --HTCCEEEEBCSSSCB----------SHHHHHHHHHHHH
T ss_pred --hCCeEEEeccCCCCC----------CHHHHHHHHHHHH
Confidence 23579999999 998 9999999998765
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-15 Score=163.21 Aligned_cols=163 Identities=18% Similarity=0.155 Sum_probs=115.0
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD 997 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d 997 (1527)
+.+...+|+++|++|+|||||+++|+....... .....|++.......+...++.++||||||+.+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 84 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPA--------------FVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER 84 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCC--------------EEEEETTTEEEEEEEETTTTEEEEEECHHHHHH
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcc--------------cCCCeeeEEEEEEEEECCEEEEEEEEeCCChHH
Confidence 446678999999999999999999986521100 011234455555555556778999999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|......+++.+|++|+|+|+++... .....++..+.. .++|+++|+||+|+.+.+.. ..++.......
T Consensus 85 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~------ 157 (191)
T 3dz8_A 85 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVV-PTEKGQLLAEQ------ 157 (191)
T ss_dssp CHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS-CHHHHHHHHHH------
T ss_pred HHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccc-CHHHHHHHHHH------
Confidence 99999999999999999999987422 222333444444 47899999999998643211 11222221111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++.+||++|. |++++++.+.+.+.
T Consensus 158 -~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 158 -LGFDFFEASAKENI----------SVRQAFERLVDAIC 185 (191)
T ss_dssp -HTCEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred -cCCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 24579999999998 99999999887653
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.7e-15 Score=155.07 Aligned_cols=155 Identities=18% Similarity=0.199 Sum_probs=102.4
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCch
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~ 999 (1527)
..+|+++|++|+|||||+++|+...-..... ...+.+. ...+.+++ +.+.||||||+.+|.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--------------~t~~~~~---~~~~~~~~~~~~~~l~D~~G~~~~~ 66 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYE--------------PTKADSY---RKKVVLDGEEVQIDILDTAGQEDYA 66 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCC--------------TTCCEEE---EEEEEETTEEEEEEEEECCC---CH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCC--------------CCcceEE---EEEEEECCEEEEEEEEECCCcchhH
Confidence 4689999999999999999998653110000 0111111 12233443 589999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
.....+++.+|++++|+|+++....+ ....+..+.. .++|+++|+||+|+.+.+. ...++.......
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~------- 138 (168)
T 1u8z_A 67 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ-VSVEEAKNRADQ------- 138 (168)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC-SCHHHHHHHHHH-------
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCc-cCHHHHHHHHHH-------
Confidence 99999999999999999998642212 2222233332 3789999999999865321 112233322221
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..+|++++||++|. |++++++++.+.+
T Consensus 139 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i 165 (168)
T 1u8z_A 139 WNVNYVETSAKTRA----------NVDKVFFDLMREI 165 (168)
T ss_dssp HTCEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred cCCeEEEeCCCCCC----------CHHHHHHHHHHHH
Confidence 23579999999998 9999999998765
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.4e-15 Score=156.33 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=103.7
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCchH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df~~ 1000 (1527)
.+|+++|++|+|||||+++|+......... ...+.. . ...+.++ ...++||||||+.+|..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------------~~~~~~-~--~~~~~~~~~~~~~~l~D~~G~~~~~~ 66 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYD--------------PTIEDF-Y--RKEIEVDSSPSVLEILDTAGTEQFAS 66 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCC--------------TTCCEE-E--EEEEEETTEEEEEEEEECCCTTCCHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCC--------------CCccee-E--EEEEEECCEEEEEEEEECCCchhhHH
Confidence 589999999999999999998652211000 001111 1 2223333 35699999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.....++.+|++++|+|+++.... .....+..+.. .++|+++|+||+|+...+. ...++....... .
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~-------~ 138 (167)
T 1kao_A 67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESERE-VSSSEGRALAEE-------W 138 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC-SCHHHHHHHHHH-------H
T ss_pred HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccccc-CCHHHHHHHHHH-------h
Confidence 999999999999999999874221 12223333332 4799999999999854321 011222222111 2
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+|++++||++|. |++++++.+.+.+
T Consensus 139 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 164 (167)
T 1kao_A 139 GCPFMETSAKSKT----------MVDELFAEIVRQM 164 (167)
T ss_dssp TSCEEEECTTCHH----------HHHHHHHHHHHHH
T ss_pred CCCEEEecCCCCc----------CHHHHHHHHHHHH
Confidence 4589999999998 9999999998765
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-15 Score=173.88 Aligned_cols=153 Identities=21% Similarity=0.292 Sum_probs=112.0
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH-
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG- 1000 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~- 1000 (1527)
..+|+++|++|+|||||+++|++... . .....|+|+..+...+.+ +..++||||||+.+|..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~------~----------v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~ 65 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ------R----------VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPY 65 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC------C----------CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC------c----------ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCC
Confidence 46899999999999999999985411 1 112258888877777777 88999999999998862
Q ss_pred -----HHHHHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHHHHHHHhhhcccc
Q psy1758 1001 -----EVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 1001 -----ev~~~l~--~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~~~~~~~~l~~~~ 1072 (1527)
....++. .+|++++|+|++.. .....++..+.+.++|+++|+||+|+...+ .....+++..
T Consensus 66 ~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~--------- 134 (272)
T 3b1v_A 66 SPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSY--------- 134 (272)
T ss_dssp SHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHH---------
T ss_pred ChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHH---------
Confidence 2334454 59999999999862 334445566677899999999999975321 1111222222
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
.+++|++++||++|. |+++|++.+.+.+..
T Consensus 135 -~lg~~vi~~SA~~g~----------gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 135 -HLGVPVVATSALKQT----------GVDQVVKKAAHTTTS 164 (272)
T ss_dssp -HHTSCEEECBTTTTB----------SHHHHHHHHHHSCTT
T ss_pred -HcCCCEEEEEccCCC----------CHHHHHHHHHHHHhh
Confidence 124689999999998 999999999887643
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-14 Score=174.60 Aligned_cols=157 Identities=27% Similarity=0.336 Sum_probs=105.5
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCCh---------hhHHHHHHhhcccc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGH---------EAFTAMRARGAKVT 140 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~---------e~f~~~~~~~~~~a 140 (1527)
+.|+++|++|+|||||+|+|.+..+.....+++|.+.....+.+++..+.+|||||+ +.|..... .+..+
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~a 258 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYS 258 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGS
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhC
Confidence 359999999999999999999988777777889998888888899999999999996 55655443 67899
Q ss_pred CEEEEEEeCCCCC--cHHH----HHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccccccc-CCCCcEEEeec
Q psy1758 141 DIVVLVVAADDGV--MPQT----REAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEY-GGASPFISISA 213 (1527)
Q Consensus 141 D~~IlVvda~~g~--~~qt----~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~-~~~~~v~~iSA 213 (1527)
|++++|+|+++.. .... .+.+..+...+.|+++|.||+|+.+............ ....+ ....+++++||
T Consensus 259 D~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---l~~~l~~~~~~~~~~SA 335 (364)
T 2qtf_A 259 DALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEK---LSKELYSPIFDVIPISA 335 (364)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHH---HHHHHCSCEEEEEECBT
T ss_pred CEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHH---HHHHhcCCCCcEEEEEC
Confidence 9999999998754 2222 2223333235789999999999976432211111100 00011 11236899999
Q ss_pred cCCCChhHHHHHHHHHH
Q psy1758 214 KTGVGINKLLENISLQA 230 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~~ 230 (1527)
++|.|+++|++.|....
T Consensus 336 ~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 336 LKRTNLELLRDKIYQLA 352 (364)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHh
Confidence 99999999999997654
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.6e-15 Score=160.61 Aligned_cols=160 Identities=19% Similarity=0.209 Sum_probs=111.6
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
+...+|+++|++|+|||||+++|+....... .....|.+.......+...+..+.||||||+.+|.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHD--------------SRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR 88 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSS--------------CCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC--------------CCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh
Confidence 4567999999999999999999986522111 01223444444444444456789999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
..+..+++.+|++|+|+|++++...+ ....+..+.. .++|+++|+||+|+...+.. ..++...... ..
T Consensus 89 ~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~-------~~ 160 (193)
T 2oil_A 89 AITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREV-PTEEARMFAE-------NN 160 (193)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCS-CHHHHHHHHH-------HT
T ss_pred hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccccccc-CHHHHHHHHH-------Hc
Confidence 99999999999999999998743222 2333344433 37899999999998653211 1222222221 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.++++++||++|. |++.+++.|.+.+
T Consensus 161 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i 186 (193)
T 2oil_A 161 GLLFLETSALDST----------NVELAFETVLKEI 186 (193)
T ss_dssp TCEEEEECTTTCT----------THHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 4579999999998 9999999988765
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-15 Score=178.07 Aligned_cols=154 Identities=20% Similarity=0.171 Sum_probs=111.8
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC-eEEEEEeCCChhh-------HHHHHHhhcccc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH-GSITFLDTPGHEA-------FTAMRARGAKVT 140 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~-~~i~~iDTPG~e~-------f~~~~~~~~~~a 140 (1527)
-+.|+++|.+|+|||||+++|++........+++|.+.....+.+++ ..+.||||||+.. +.....+.+..+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 35799999999999999999998887667777888887777788776 7899999999643 223334445679
Q ss_pred CEEEEEEeCCC---CCcH-HHHHHHHHHHH-----cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEe
Q psy1758 141 DIVVLVVAADD---GVMP-QTREAIAHAKI-----SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 141 D~~IlVvda~~---g~~~-qt~e~i~~~~~-----~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
|++|+|+|+++ .... +...++..+.. .++|+++|+||+|+.... +....+... +....+++++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--e~~~~l~~~------l~~~~~v~~i 309 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--ENLEAFKEK------LTDDYPVFPI 309 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--HHHHHHHHH------CCSCCCBCCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--HHHHHHHHH------hhcCCCEEEE
Confidence 99999999986 2222 22233334443 478999999999997632 111222211 1112579999
Q ss_pred eccCCCChhHHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~~ 230 (1527)
||+++.|+++|++.|....
T Consensus 310 SA~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 310 SAVTREGLRELLFEVANQL 328 (342)
T ss_dssp SSCCSSTTHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHHH
Confidence 9999999999999997553
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-14 Score=160.15 Aligned_cols=161 Identities=18% Similarity=0.191 Sum_probs=110.5
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~ 996 (1527)
.+...+|+++|++|+|||||+++|+...- .. +....++.+.....+.+++ +.++||||||+.
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~--~~--------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAF--SE--------------RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC--------------------------CEEEEEEEETTEEEEEEEECCTTCG
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCC--CC--------------CCCCCcceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 35568999999999999999999986421 00 0111122233334555655 689999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
+|...+..+++.+|++|+|+|+++.... ....++..+.. .++|+++|+||+|+...+.. ..+++.+....
T Consensus 90 ~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v-~~~~~~~~~~~----- 163 (201)
T 2hup_A 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREV-SLAEAQSLAEH----- 163 (201)
T ss_dssp GGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS-CHHHHHHHHHH-----
T ss_pred hHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccccccc-CHHHHHHHHHH-----
Confidence 9999999999999999999999874222 22333344443 46899999999998653211 12233332222
Q ss_pred cccCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1073 EQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1073 ~~~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
..+ +++++||++|. |++++++.|.+.+..
T Consensus 164 --~~~~~~~~~SA~~g~----------gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 164 --YDILCAIETSAKDSS----------NVEEAFLRVATELIM 193 (201)
T ss_dssp --TTCSEEEECBTTTTB----------SHHHHHHHHHHHHHH
T ss_pred --cCCCEEEEEeCCCCC----------CHHHHHHHHHHHHHH
Confidence 234 79999999998 999999999887753
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.4e-15 Score=160.46 Aligned_cols=161 Identities=19% Similarity=0.189 Sum_probs=112.8
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+++|++|+|||||+++|+...... ......|.+.......+....+.+.||||||+.+|.
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 78 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDP--------------ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR 78 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCT--------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCc--------------cCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhh
Confidence 455799999999999999999998652110 112223445444444444455789999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
.....+++.+|++|+|+|++++...+. ..++..+.. .++|+++|+||+|+...... .++.......
T Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~------- 149 (195)
T 1x3s_A 79 TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVD--RNEGLKFARK------- 149 (195)
T ss_dssp CSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSC--HHHHHHHHHH-------
T ss_pred hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccC--HHHHHHHHHH-------
Confidence 999999999999999999987532222 223333333 36889999999999543211 1222222211
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
..++++++||++|. |++++++.|.+.++.
T Consensus 150 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 150 HSMLFIEASAKTCD----------GVQCAFEELVEKIIQ 178 (195)
T ss_dssp TTCEEEECCTTTCT----------THHHHHHHHHHHHHT
T ss_pred cCCEEEEecCCCCC----------CHHHHHHHHHHHHHh
Confidence 24579999999998 999999999988754
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.7e-15 Score=157.99 Aligned_cols=160 Identities=17% Similarity=0.146 Sum_probs=107.7
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~ 996 (1527)
..+..+|+++|++|+|||||+++|+........ ....+.+. ...+.+++ +.++||||||+.
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------~~t~~~~~---~~~~~~~~~~~~~~~~Dt~G~~ 68 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDY--------------DPTIEDSY---TKICSVDGIPARLDILDTAGQE 68 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSC--------------CTTCCEEE---EEEEEETTEEEEEEEEECCCTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCcccc--------------CCCcCceE---EEEEEECCEEEEEEEEECCCch
Confidence 345679999999999999999999875211110 01112221 13344444 578999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHH----HHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKA----LKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~----~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~ 1071 (1527)
+|.......++.+|++++|+|+++... ......+..+ ...++|+++|+||+|+...+.. ..++......
T Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~----- 142 (181)
T 2fn4_A 69 EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQV-PRSEASAFGA----- 142 (181)
T ss_dssp TTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCS-CHHHHHHHHH-----
T ss_pred hhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccc-CHHHHHHHHH-----
Confidence 999888999999999999999987321 1122222222 2347899999999998643210 0112221111
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
...++++++||++|. |++++++.|.+.+..
T Consensus 143 --~~~~~~~~~Sa~~~~----------gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 143 --SHHVAYFEASAKLRL----------NVDEAFEQLVRAVRK 172 (181)
T ss_dssp --HTTCEEEECBTTTTB----------SHHHHHHHHHHHHHH
T ss_pred --HcCCeEEEecCCCCC----------CHHHHHHHHHHHHHH
Confidence 124579999999998 999999999887643
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.6e-15 Score=180.91 Aligned_cols=153 Identities=22% Similarity=0.251 Sum_probs=118.9
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCC-Cch-
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA-DFG- 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~-df~- 999 (1527)
..+|+|+|.+|+|||||+|+|+.... ..+....|+|.+.....+.+++..+.||||||+. ++.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~---------------a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~ 307 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDR---------------AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETND 307 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTB---------------CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCT
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCC---------------CccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchh
Confidence 36899999999999999999986521 1223346888888888899999999999999998 654
Q ss_pred -------HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 1000 -------GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 1000 -------~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
......+..+|++|+|+|++++...+...++..+ .+.|+++|+||+|+..... .+++.+.+ .
T Consensus 308 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~---~~~~~~~~---~--- 376 (482)
T 1xzp_A 308 LVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKIN---EEEIKNKL---G--- 376 (482)
T ss_dssp TCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCC---HHHHHHHH---T---
T ss_pred hHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccC---HHHHHHHh---c---
Confidence 2345678999999999999988777776666554 4889999999999975411 22333221 1
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...|++++||++|. |+++|+++|.+.+.
T Consensus 377 --~~~~~i~iSAktg~----------Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 377 --TDRHMVKISALKGE----------GLEKLEESIYRETQ 404 (482)
T ss_dssp --CSTTEEEEEGGGTC----------CHHHHHHHHHHHTH
T ss_pred --CCCcEEEEECCCCC----------CHHHHHHHHHHHHh
Confidence 13579999999998 99999999988764
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.5e-15 Score=156.07 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=106.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df 998 (1527)
...+|+++|++|+|||||+++|+....... .....|.+. ....+.++ ...+.||||||+.+|
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--------------~~~t~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKD--------------YKKTIGVDF--LERQIQVNDEDVRLMLWDTAGQEEF 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCC--------------SSCCCSSSE--EEEEEEETTEEEEEEEECCTTGGGT
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCC--------------CCCceEEEE--EEEEEEECCEEEEEEEEcCCCcHhH
Confidence 457899999999999999999986421100 001112222 22333444 458999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH--cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK--LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~--~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
...+..+++.+|++++|+|+++.... .....+..+.. .+.|+++|+||+|+...+. ...+++...... .
T Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~-------~ 139 (168)
T 1z2a_A 68 DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSC-IKNEEAEGLAKR-------L 139 (168)
T ss_dssp TCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCS-SCHHHHHHHHHH-------H
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccc-cCHHHHHHHHHH-------c
Confidence 88888999999999999999874322 22223333333 3899999999999864321 012222222221 2
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+|++++||++|. |++++++.|.+.+
T Consensus 140 ~~~~~~~Sa~~~~----------~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 140 KLRFYRTSVKEDL----------NVSEVFKYLAEKH 165 (168)
T ss_dssp TCEEEECBTTTTB----------SSHHHHHHHHHHH
T ss_pred CCeEEEEecCCCC----------CHHHHHHHHHHHH
Confidence 3579999999998 9999999998765
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.2e-15 Score=160.14 Aligned_cols=160 Identities=19% Similarity=0.186 Sum_probs=97.9
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec---CeEEEEEeCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN---GTRINIIDTPGHA 996 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---~~~iniiDTPGh~ 996 (1527)
....+|+++|++|+|||||+++|+...... +..+.++.+.....+.++ ...+.||||||+.
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQ----------------QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCT----------------TC---CCCSCEEEEECCSSSCCEEEEEECCC---
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCc----------------ccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh
Confidence 456799999999999999999998652110 011122222223344443 4689999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH-------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhh
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK-------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL 1068 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~-------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l 1068 (1527)
+|.......++.+|++|+|+|++++...+.. .++..+.. .++|+++|+||+|+.........+++......
T Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~- 148 (182)
T 1ky3_A 70 RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS- 148 (182)
T ss_dssp -------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH-
T ss_pred HhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh-
Confidence 9998888889999999999999875332222 22222222 57899999999998543211112222222111
Q ss_pred cccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1069 ~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
....|++++||++|. |++++++.|.+.+
T Consensus 149 -----~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 149 -----LGDIPLFLTSAKNAI----------NVDTAFEEIARSA 176 (182)
T ss_dssp -----TTSCCEEEEBTTTTB----------SHHHHHHHHHHHH
T ss_pred -----cCCCeEEEEecCCCC----------CHHHHHHHHHHHH
Confidence 124579999999998 9999999998765
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-15 Score=164.99 Aligned_cols=159 Identities=20% Similarity=0.169 Sum_probs=108.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~d 997 (1527)
....+|+++|++|+|||||+++|+....... ....++.+.....+.++ .+.+.||||||+.+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQ----------------YKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSS----------------CCCCCSEEEEEEEEESSSCEEEEEEEEECSSGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCC----------------CCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 4567999999999999999999986532110 01122223333334444 36899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHH-------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKALK-------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC 1069 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~-------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~ 1069 (1527)
|...+..+++.+|++|+|+|++++...+....| ..+.. .++|+++|+||+|+..... ..+++......
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~-- 145 (207)
T 1vg8_A 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQV--ATKRAQAWCYS-- 145 (207)
T ss_dssp GSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCS--CHHHHHHHHHH--
T ss_pred HHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccccc--CHHHHHHHHHh--
Confidence 988888888999999999999875332222222 22221 4789999999999974321 12222222211
Q ss_pred ccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1070 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1070 ~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...+|++++||++|. |+++++++|.+.++
T Consensus 146 ----~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 146 ----KNNIPYFETSAKEAI----------NVEQAFQTIARNAL 174 (207)
T ss_dssp ----TTSCCEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred ----cCCceEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 234689999999998 99999999988764
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-15 Score=161.52 Aligned_cols=159 Identities=13% Similarity=0.136 Sum_probs=111.7
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
+..+|+++|++|+|||||+++|+... +.. .....| .....+.++++.+++|||||+.+|..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~-------------~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~~~~~ 81 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGD--VVT-------------TVPTVG----VNLETLQYKNISFEVWDLGGQTGVRP 81 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSC--CEE-------------ECSSTT----CCEEEEEETTEEEEEEEECCSSSSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCC--CCC-------------cCCCCc----eEEEEEEECCEEEEEEECCCCHhHHH
Confidence 45689999999999999999996431 110 011122 22345677889999999999999888
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.+..+++.+|++++|+|++++... .....+..... .+.|+++|+||+|+.+... .+++.+.+.... ....
T Consensus 82 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~--~~~~ 156 (189)
T 2x77_A 82 YWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS---EAEIAEQLGVSS--IMNR 156 (189)
T ss_dssp CCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGG--CCSS
T ss_pred HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC---HHHHHHHhChhh--ccCC
Confidence 777788999999999999876432 22333444433 3789999999999976532 122332221111 1223
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
.+|++++||++|. |++++++.+.+.++.
T Consensus 157 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 157 TWTIVKSSSKTGD----------GLVEGMDWLVERLRE 184 (189)
T ss_dssp CEEEEECCTTTCT----------THHHHHHHHHHHHHH
T ss_pred ceEEEEccCCCcc----------CHHHHHHHHHHHHHh
Confidence 5689999999998 999999999887753
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-14 Score=171.14 Aligned_cols=156 Identities=21% Similarity=0.235 Sum_probs=112.6
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH---------HHHHhhc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT---------AMRARGA 137 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~---------~~~~~~~ 137 (1527)
.+.++|+++|++|+|||||+++|.+..+..+..+++|.+.....+...+..+.+|||||+..+. .......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 4678999999999999999999999887666677888887777777788899999999974321 1222334
Q ss_pred cccCEEEEEEeCCCCC--cHHH-HHHHHHHHH--cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEee
Q psy1758 138 KVTDIVVLVVAADDGV--MPQT-REAIAHAKI--SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISIS 212 (1527)
Q Consensus 138 ~~aD~~IlVvda~~g~--~~qt-~e~i~~~~~--~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iS 212 (1527)
..+|++++|+|+++.. ..+. .+++..+.. .+.|+++|+||+|+.............. . ...+++++|
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~------~--~~~~~~~iS 316 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVK------E--KGLNPIKIS 316 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHH------H--TTCCCEECB
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHH------h--cCCCeEEEe
Confidence 5699999999988743 3222 333333332 2799999999999976322111111111 1 135899999
Q ss_pred ccCCCChhHHHHHHHHHH
Q psy1758 213 AKTGVGINKLLENISLQA 230 (1527)
Q Consensus 213 Aktg~gI~eL~~~l~~~~ 230 (1527)
|++|+|+++|+++|....
T Consensus 317 A~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 317 ALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp TTTTBTHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 999999999999997554
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=159.43 Aligned_cols=154 Identities=15% Similarity=0.187 Sum_probs=111.1
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.++|+++|++|+|||||+++|.+..+.....++++.+.....+.+++. .+.+|||||++.|..++..+++.+|++++|
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 84 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV 84 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEE
Confidence 368999999999999999999998876666666666666667777775 567899999999987777788899999999
Q ss_pred EeCCCCCcHHHH-HHHHHHH---HcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQTR-EAIAHAK---ISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~qt~-e~i~~~~---~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++....+.. .++..+. ..+.|+++++||+|+.+... ......+.. . ..++++++||+++.|++
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~------~--~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 85 YDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE------K--NNLSFIETSALDSTNVE 156 (199)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------H--TTCEEEECCTTTCTTHH
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHH------H--cCCeEEEEeCCCCCCHH
Confidence 999874332222 2222222 24678999999999964211 111111111 1 12578999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
++++.|....
T Consensus 157 ~l~~~l~~~~ 166 (199)
T 2f9l_A 157 EAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998654
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.8e-15 Score=153.97 Aligned_cols=157 Identities=15% Similarity=0.154 Sum_probs=104.9
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|++|+|||||+++|+......... ...+.+. .....+...++.++||||||+.+|....
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~~~~--------------~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 68 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYD--------------PTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMR 68 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSCC--------------CCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------------CCccceE-EEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 589999999999999999998642110000 1111111 1112222235689999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
...++.+|++++|+|+++.... .....+..+.. .++|+++|+||+|+.+.+. ...+++......+ ..+
T Consensus 69 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~------~~~ 141 (167)
T 1c1y_A 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV-VGKEQGQNLARQW------CNC 141 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC-SCHHHHHHHHHHT------TSC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccccc-CCHHHHHHHHHHc------cCC
Confidence 9999999999999999873211 12223333333 3799999999999865321 1122222222111 145
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
|++++||++|. |++++++.|.+.+
T Consensus 142 ~~~~~Sa~~~~----------gi~~l~~~l~~~i 165 (167)
T 1c1y_A 142 AFLESSAKSKI----------NVNEIFYDLVRQI 165 (167)
T ss_dssp EEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred cEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 79999999998 9999999998765
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=155.96 Aligned_cols=158 Identities=16% Similarity=0.180 Sum_probs=107.0
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
....+|+++|++|+|||||+++|+...-..... ...+.+ ....+.+++ +.+.||||||+.+
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------------~t~~~~---~~~~~~~~~~~~~~~l~Dt~G~~~ 78 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE--------------PTKADS---YRKKVVLDGEEVQIDILDTAGQED 78 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC--------------TTCCEE---EEEEEEETTEEEEEEEEECCCTTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCC--------------CccceE---EEEEEEECCEEEEEEEEECCCCcc
Confidence 345799999999999999999998653110000 011111 122233444 5899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
|...+..+++.+|++++|+|+++....+. ..++..+.. .++|+++|+||+|+.+.+. ...+++......
T Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~----- 152 (187)
T 2a9k_A 79 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ-VSVEEAKNRAEQ----- 152 (187)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC-SCHHHHHHHHHH-----
T ss_pred cHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc-cCHHHHHHHHHH-----
Confidence 99999999999999999999986422112 222233322 3789999999999865321 112233332222
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |++++++.|.+.+.
T Consensus 153 --~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 153 --WNVNYVETSAKTRA----------NVDKVFFDLMREIR 180 (187)
T ss_dssp --TTCEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred --cCCeEEEeCCCCCC----------CHHHHHHHHHHHHH
Confidence 24579999999998 99999999987763
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=158.58 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=108.5
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~ 996 (1527)
.....+|+++|++|+|||||+++|+...-... . ....+.+. ...+.+++ +.+.||||||+.
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~-------------~~t~~~~~---~~~~~~~~~~~~~~l~Dt~G~~ 73 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVED-Y-------------EPTKADSY---RKKVVLDGEEVQIDILDTAGQE 73 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTT-C-------------CTTCCEEE---EEEEEETTEEEEEEEEECCCTT
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCC-C-------------CCccceEE---EEEEEECCEEEEEEEEcCCChh
Confidence 34567999999999999999999986531100 0 01111111 22344444 589999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~ 1071 (1527)
+|......+++.+|++++|+|+++....+. ..++..+.. .++|+++|+||+|+.+.+. ...+++......
T Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~---- 148 (206)
T 2bov_A 74 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ-VSVEEAKNRAEQ---- 148 (206)
T ss_dssp CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC-SCHHHHHHHHHH----
T ss_pred hhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccccc-ccHHHHHHHHHH----
Confidence 999999999999999999999987422222 222233332 3789999999999865321 112233332222
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |+++++++|.+.+.
T Consensus 149 ---~~~~~~~~Sa~~g~----------gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 149 ---WNVNYVETSAKTRA----------NVDKVFFDLMREIR 176 (206)
T ss_dssp ---HTCEEEEECTTTCT----------THHHHHHHHHHHHH
T ss_pred ---hCCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 23579999999998 99999999988764
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=151.05 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=104.1
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCchH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df~~ 1000 (1527)
.+|+++|++|+|||||+++|+.....-...+. .+.. ....+.++ .+.+.+|||||+.+|..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~--------------~~~~---~~~~~~~~~~~~~~~~~D~~G~~~~~~ 66 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPT--------------IEDS---YRKQVVIDGETCLLDILDTAGQEEYSA 66 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTT--------------CCEE---EEEEEEETTEEEEEEEEECCCCSSCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccCCc--------------cceE---EEEEEEECCEEEEEEEEECCCchhhhH
Confidence 58999999999999999999865221100000 0111 11223333 35689999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
....++..+|++++|+|+++....+ ...++..+.. .++|+++|+||+|+.... ...++..+.... .
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~-------~ 137 (166)
T 2ce2_X 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAART--VESRQAQDLARS-------Y 137 (166)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC--SCHHHHHHHHHH-------H
T ss_pred HHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcc--cCHHHHHHHHHH-------c
Confidence 9999999999999999998642212 2233333333 279999999999987532 112222222222 2
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+|++.+||++|. |++++++.+.+.+
T Consensus 138 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 138 GIPYIETSAKTRQ----------GVEDAFYTLVREI 163 (166)
T ss_dssp TCCEEEECTTTCT----------THHHHHHHHHHHH
T ss_pred CCeEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 3589999999998 9999999998765
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=169.94 Aligned_cols=162 Identities=17% Similarity=0.241 Sum_probs=110.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc------cccCCceeEEE----------------------------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV------FSEAGGITQHI---------------------------------- 106 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~------~~~~~giT~~~---------------------------------- 106 (1527)
...++|+++|++|+|||||+|+|.+..+. .+..++.++-.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 46689999999999999999999988763 23334322110
Q ss_pred -----------EEEEEEeC-CeEEEEEeCCChh-------------hHHHHHHhhccccCEEE-EEEeCCCCCcHHHH-H
Q psy1758 107 -----------GAYNVVTN-HGSITFLDTPGHE-------------AFTAMRARGAKVTDIVV-LVVAADDGVMPQTR-E 159 (1527)
Q Consensus 107 -----------~~~~~~~~-~~~i~~iDTPG~e-------------~f~~~~~~~~~~aD~~I-lVvda~~g~~~qt~-e 159 (1527)
....+... ...++||||||+. .+..++..+++.++.++ +|+|++++...+.. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 01111122 3689999999952 57778888888888776 69999987766654 4
Q ss_pred HHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHHHH
Q psy1758 160 AIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAE 231 (1527)
Q Consensus 160 ~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~ 231 (1527)
++..+...+.|+++|+||+|+.+.... ....+. ....... .+..+++++||++|.|++++++.|.....
T Consensus 184 ~~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~-~~~~~~~-~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 184 IAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLE-NKLLPLR-RGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp HHHHHCTTCSSEEEEEECGGGSCTTCC-CHHHHT-TCSSCCT-TCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHhCCCCCeEEEEEEccccCCCCch-HHHHHh-CCcCcCC-CCcEEEECCChhhccccccHHHHHHHHHH
Confidence 666666678999999999999763321 111121 1111100 12357899999999999999999986443
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-15 Score=160.14 Aligned_cols=159 Identities=16% Similarity=0.125 Sum_probs=105.6
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
.+..+|+++|++|+|||||+++|+....... .....+.+. ...+.+++ +.++||||||+.+
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~---~~~~~~~~~~~~~~l~Dt~G~~~ 66 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDS--------------YDPTIENTF---TKLITVNGQEYHLQLVDTAGQDE 66 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSC--------------CCTTCCEEE---EEEEEETTEEEEEEEEECCCCCT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCC--------------CCCCccccE---EEEEEECCEEEEEEEEeCCCchh
Confidence 4567999999999999999999985421111 011223333 22334444 6789999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHH----HHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKA----LKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~----~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
|.......++.+|++++|+|+++....+. ...+..+ ...++|+++|+||+|+...+.. ..++.......
T Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~----- 140 (181)
T 3t5g_A 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI-SYEEGKALAES----- 140 (181)
T ss_dssp TCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCS-CHHHHHHHHHH-----
T ss_pred hhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhccee-cHHHHHHHHHH-----
Confidence 98777788899999999999987322211 1222222 2347899999999998654311 12222222222
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
..+|++++||++|. |++++++.+.+.+..
T Consensus 141 --~~~~~~~~Sa~~~~----------~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 141 --WNAAFLESSAKENQ----------TAVDVFRRIILEAEK 169 (181)
T ss_dssp --TTCEEEECCTTSHH----------HHHHHHHHHHHHHHT
T ss_pred --hCCcEEEEecCCCC----------CHHHHHHHHHHHHHH
Confidence 24579999999998 999999999887754
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5e-15 Score=156.89 Aligned_cols=159 Identities=17% Similarity=0.107 Sum_probs=100.8
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
+...+|+++|++|+|||||+++|+....... ....++.......+.+++ +.+.||||||+.+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 67 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDK----------------HITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSS----------------CCCCCSCEEEEEEEESSSCEEEEEEEECCCC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcC----------------CCCccceEEEEEEEEECCEEEEEEEEECCCcHh
Confidence 3457999999999999999999986521100 011122222223344433 5789999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|.......++.+|++++|+|++++...+. ..++..+.. .++|+++|+||+|+...+.. ..++.......
T Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~------ 140 (170)
T 1z08_A 68 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHV-SIQEAESYAES------ 140 (170)
T ss_dssp -----CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCS-CHHHHHHHHHH------
T ss_pred hhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccccc-CHHHHHHHHHH------
Confidence 98888888899999999999987432222 222233322 47899999999998653211 12222222221
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |++++++.+.+.++
T Consensus 141 -~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 141 -VGAKHYHTSAKQNK----------GIEELFLDLCKRMI 168 (170)
T ss_dssp -TTCEEEEEBTTTTB----------SHHHHHHHHHHHHH
T ss_pred -cCCeEEEecCCCCC----------CHHHHHHHHHHHHh
Confidence 23579999999998 99999999988764
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8.1e-15 Score=159.27 Aligned_cols=160 Identities=18% Similarity=0.125 Sum_probs=108.4
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~ 996 (1527)
.....+|+++|++|+|||||+++|+....... .....|.+... ..+.+++ ..++||||||+.
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~ 81 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------HDLTIGVEFGA--RMVNIDGKQIKLQIWDTAGQE 81 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCSSEEE--EEEEETTEEEEEEEECCTTGG
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCC--------------CCCcccceeEE--EEEEECCEEEEEEEEECCCch
Confidence 34567999999999999999999986522110 01112333322 3344444 689999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
+|...+..+++.+|++|+|+|+++....+. ...+..+.. .++|+++|+||+|+...+.. ..++.......
T Consensus 82 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~~----- 155 (191)
T 2a5j_A 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDV-KREEGEAFARE----- 155 (191)
T ss_dssp GTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS-CHHHHHHHHHH-----
T ss_pred hhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCcccc-CHHHHHHHHHH-----
Confidence 999888899999999999999987432222 333344443 37899999999998642210 11222222211
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..++++.+||++|. |++++++.|.+.+.
T Consensus 156 --~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 156 --HGLIFMETSAKTAC----------NVEEAFINTAKEIY 183 (191)
T ss_dssp --HTCEEEEECTTTCT----------THHHHHHHHHHHHH
T ss_pred --cCCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 24579999999998 99999999887653
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-15 Score=171.56 Aligned_cols=157 Identities=11% Similarity=0.106 Sum_probs=100.9
Q ss_pred ccCCCEEEEEecC---------CCChhHHHHHHHc---cccccccCCce-eEEEEEE----------------EEEeCCe
Q psy1758 66 LVRAPIVTIMGHV---------DHGKTSLLDYIRK---TNVVFSEAGGI-TQHIGAY----------------NVVTNHG 116 (1527)
Q Consensus 66 ~~r~~~V~IvG~~---------~~GKTSLl~~L~~---~~~~~~~~~gi-T~~~~~~----------------~~~~~~~ 116 (1527)
..+..+|+++|.+ |+|||||+++|.+ ..+...+.+++ +.++... .+.....
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4566899999999 9999999999998 44544444443 2221111 0122334
Q ss_pred EEEEEe-----------------------CCChhhHHHHHHhhcc---------------------ccCEEEEEEeCCCC
Q psy1758 117 SITFLD-----------------------TPGHEAFTAMRARGAK---------------------VTDIVVLVVAADDG 152 (1527)
Q Consensus 117 ~i~~iD-----------------------TPG~e~f~~~~~~~~~---------------------~aD~~IlVvda~~g 152 (1527)
.+.||| ++|+++|..++..+++ .||++|+|+|+++.
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 788999 6666666666666666 79999999999985
Q ss_pred --CcHH----HHHHHHHH-HHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHH
Q psy1758 153 --VMPQ----TREAIAHA-KISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLEN 225 (1527)
Q Consensus 153 --~~~q----t~e~i~~~-~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~ 225 (1527)
...+ |...+... ...++|+++|+||+|+...........+. ... ..++++++||++|.|++++|+.
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~------~~~-~~~~~~e~SAk~g~gv~elf~~ 248 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFA------LSK-KNLQVVETSARSNVNVDLAFST 248 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHH------HTS-SSCCEEECBTTTTBSHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHH------Hhc-CCCeEEEEECCCCCCHHHHHHH
Confidence 3222 22222222 34579999999999996532111111111 111 1358999999999999999999
Q ss_pred HHHH
Q psy1758 226 ISLQ 229 (1527)
Q Consensus 226 l~~~ 229 (1527)
|...
T Consensus 249 l~~~ 252 (255)
T 3c5h_A 249 LVQL 252 (255)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9754
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.7e-15 Score=159.52 Aligned_cols=159 Identities=20% Similarity=0.231 Sum_probs=103.6
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
.+..+|+++|++|+|||||+++|+....... .....|.+. ....+.+++ ..++||||||+.+
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDR--------------TEATIGVDF--RERAVDIDGERIKIQLWDTAGQER 81 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSS--------------CCCCCSCCE--EEEEEEETTEEEEEEEEECCCSHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCCcceEE--EEEEEEECCEEEEEEEEECCCchh
Confidence 4568999999999999999999986421100 011122222 233344444 6899999999999
Q ss_pred ch-HHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc
Q psy1758 998 FG-GEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 998 f~-~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~ 1071 (1527)
|. ..+..+++.+|++|+|+|+++....+. ...+..+. ..++|+++|+||+|+.+.+.. ..++......
T Consensus 82 ~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~----- 155 (189)
T 1z06_A 82 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQV-PTDLAQKFAD----- 155 (189)
T ss_dssp HHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCS-CHHHHHHHHH-----
T ss_pred hhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccee-CHHHHHHHHH-----
Confidence 88 677788999999999999987422222 22223333 247899999999998643210 1122222111
Q ss_pred ccccCCcEEEeccccC---CcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1072 EEQLDFPVIYTSALHG---YANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g---~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...++++.+||++| . |+.++++.|.+.++
T Consensus 156 --~~~~~~~~~Sa~~~~~~~----------~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 156 --THSMPLFETSAKNPNDND----------HVEAIFMTLAHKLK 187 (189)
T ss_dssp --HTTCCEEECCSSSGGGGS----------CHHHHHHHHC----
T ss_pred --HcCCEEEEEeCCcCCccc----------CHHHHHHHHHHHHh
Confidence 12458999999999 6 89999999987764
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=158.69 Aligned_cols=162 Identities=15% Similarity=0.126 Sum_probs=108.9
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~ 996 (1527)
.....+|+++|++|+|||||+++|+.........+. .|.+. ...+.+++ +.++||||||+.
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t--------------~~~~~---~~~~~~~~~~~~~~i~D~~G~~ 77 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPT--------------VFDHY---AVSVTVGGKQYLLGLYDTAGQE 77 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCS--------------SCCCE---EEEEESSSCEEEEEEECCCCSS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--------------cccee---EEEEEECCEEEEEEEEECCCCc
Confidence 345679999999999999999999865211100000 11111 12334444 689999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhH-H-HHHHHHHHc--CCccEEEEeccCCCCCChh-----------hhHHHH
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQT-R-FVTRKALKL--GFKPIVVVNKIDRSNARPE-----------WVVDAT 1061 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt-~-~~~~~~~~~--glp~IvviNKiD~~~a~~~-----------~v~~~~ 1061 (1527)
+|......+++.+|++++|+|+++....+. . .++..+... ++|+++|+||+|+...... -..++.
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 157 (194)
T 2atx_A 78 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQG 157 (194)
T ss_dssp SSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHH
T ss_pred chhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHH
Confidence 999888888999999999999987432222 2 233444444 8999999999999764210 001111
Q ss_pred HHHHhhhcccccccCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1062 FDLFDKLCATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1062 ~~~~~~l~~~~~~~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
...... ..+ +++.+||++|. |++++++.+.+.+..|
T Consensus 158 ~~~~~~-------~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~i~~p 194 (194)
T 2atx_A 158 QKLAKE-------IGACCYVECSALTQK----------GLKTVFDEAIIAILTP 194 (194)
T ss_dssp HHHHHH-------HTCSCEEECCTTTCT----------THHHHHHHHHHHHHCC
T ss_pred HHHHHH-------cCCcEEEEeeCCCCC----------CHHHHHHHHHHHHhcC
Confidence 111111 123 79999999998 9999999998876543
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.6e-16 Score=170.43 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=103.8
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~ 996 (1527)
.+...+|+++|++|+|||||+++|+..... .+..++++.+.....+.+++ +.++||||||+.
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 93 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYT----------------ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCC----------------CHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCC----------------CCcCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 356789999999999999999999743111 11123344444445566665 679999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHHc---CCccEEEEeccCCCCCChh--hhHHHHHHHHhhhcc
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALKL---GFKPIVVVNKIDRSNARPE--WVVDATFDLFDKLCA 1070 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~~---glp~IvviNKiD~~~a~~~--~v~~~~~~~~~~l~~ 1070 (1527)
+|...+..+++.+|++|+|+|+++....+. ..++..+... ++|+++|+||+|+...+.. +...++.
T Consensus 94 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~-------- 165 (199)
T 3l0i_B 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFA-------- 165 (199)
T ss_dssp TCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHH--------
T ss_pred hHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHH--------
Confidence 999888889999999999999998533222 2333334333 7899999999998654311 1111111
Q ss_pred cccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1071 TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1071 ~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
....+|++++||++|. |+++++++|.+.+.
T Consensus 166 --~~~~~~~~~vSA~~g~----------gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 166 --DSLGIPFLETSAKNAT----------NVEQSFMTMAAEIK 195 (199)
T ss_dssp --HTTTCCBCCCCC---H----------HHHHHHHHHTTTTT
T ss_pred --HHcCCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 1234678999999998 99999999987764
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-14 Score=159.35 Aligned_cols=162 Identities=15% Similarity=0.063 Sum_probs=106.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..+|+++|.+|+|||||+++|+..... .....++|.......+.+++..+.||||||+.++.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 90 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD----------------VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRA 90 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE----------------EECC-----CEEEEEEEETTEEEEEEECTTTTTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc----------------cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcc
Confidence 34579999999999999999999864210 11124566666666777888999999999995421
Q ss_pred ---------HHHHHHHHhcCEEEEEEeCCCCCChh---HHHHHHHHHHc--CCccEEEEeccCCCCCCh--hhhHHHHHH
Q psy1758 1000 ---------GEVERILSMVDNVLLLIDAVEGPMPQ---TRFVTRKALKL--GFKPIVVVNKIDRSNARP--EWVVDATFD 1063 (1527)
Q Consensus 1000 ---------~ev~~~l~~aD~ailVVDa~~G~~~q---t~~~~~~~~~~--glp~IvviNKiD~~~a~~--~~v~~~~~~ 1063 (1527)
..+......+|++|+|+|+++....+ ....+..+... ++|+++|+||+|+...+. ....+.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 170 (228)
T 2qu8_A 91 FENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQ 170 (228)
T ss_dssp GGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHH
T ss_pred cchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHH
Confidence 12233467789999999998764422 23444555554 899999999999975421 111112222
Q ss_pred HHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1064 LFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1064 ~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.....+ ..++++++||++|. |++++++.|.+.+.
T Consensus 171 ~~~~~~-----~~~~~~~~SA~~g~----------gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 171 ILDNVK-----NPIKFSSFSTLTGV----------GVEQAKITACELLK 204 (228)
T ss_dssp HHHHCC-----SCEEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HHHhcC-----CCceEEEEecccCC----------CHHHHHHHHHHHHH
Confidence 111111 12579999999998 99999999988764
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=159.99 Aligned_cols=159 Identities=19% Similarity=0.210 Sum_probs=109.8
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
+...+|+++|++|+|||||+++|+...... +..+.++.......+.+++ +.+.||||||+.+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTN----------------DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCT----------------TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCCCcccceeEEEEEEECCEEEEEEEEeCCChHH
Confidence 456799999999999999999998652110 1112223333333445554 5899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|...+..+++.+|++|+|+|++++...+.. .++..+.. .++|+++|+||+|+...+.. ..++......
T Consensus 70 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~------- 141 (206)
T 2bcg_Y 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVV-EYDVAKEFAD------- 141 (206)
T ss_dssp TTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCS-CHHHHHHHHH-------
T ss_pred HHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccc-CHHHHHHHHH-------
Confidence 998888889999999999999875332322 22333333 35889999999999754311 1122222211
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...+|++++||++|. |++++++.|.+.+.
T Consensus 142 ~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 142 ANKMPFLETSALDST----------NVEDAFLTMARQIK 170 (206)
T ss_dssp HTTCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HcCCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 124689999999998 99999999987764
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.9e-15 Score=170.61 Aligned_cols=151 Identities=18% Similarity=0.189 Sum_probs=100.8
Q ss_pred EEEEEecCCCChhHHHHHHHcccccc---ccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH---HHHhhccccCEEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVF---SEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA---MRARGAKVTDIVV 144 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~---~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~---~~~~~~~~aD~~I 144 (1527)
+|+++|+.|+|||||++++....+.. ...+++..+.. .+. ...++++|||||||+|.. ++..+++.++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~--~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~I 77 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLE--HFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALV 77 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCE--EEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeE--EEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEE
Confidence 58999999999999999887553321 12233333332 231 235899999999999964 5788899999999
Q ss_pred EEEeCCCCCcHHHHHH----HHHHH--HcCCCEEEEEEcccCCcchhH-----HHHHHHhhhccccccc-CCCCcEEEee
Q psy1758 145 LVVAADDGVMPQTREA----IAHAK--ISGVPLIVAINKIDKLDINLD-----RIKQDLISEQVIPEEY-GGASPFISIS 212 (1527)
Q Consensus 145 lVvda~~g~~~qt~e~----i~~~~--~~~vpiIvviNKiDl~~~~~~-----~~~~~l~~~~~~~~~~-~~~~~v~~iS 212 (1527)
+|+|+++. .....+. +..+. ..++|+++++||+|+.+.+.. .+..+..+ ....... +..++|+++|
T Consensus 78 lV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~-~la~~~~~~~~i~f~eTS 155 (331)
T 3r7w_B 78 YVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGE-ELLELGLDGVQVSFYLTS 155 (331)
T ss_dssp EECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHH-TTSSSSCSCCCEEEECCC
T ss_pred EEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHH-HHHhhcccccCceEEEec
Confidence 99999987 3333332 33332 247899999999999764321 11111111 1111100 1347899999
Q ss_pred ccCCCChhHHHHHHH
Q psy1758 213 AKTGVGINKLLENIS 227 (1527)
Q Consensus 213 Aktg~gI~eL~~~l~ 227 (1527)
|++ .||.+.|..++
T Consensus 156 Akd-~nV~eAFs~iv 169 (331)
T 3r7w_B 156 IFD-HSIYEAFSRIV 169 (331)
T ss_dssp SSS-SHHHHHHHHHH
T ss_pred cCC-CcHHHHHHHHH
Confidence 998 58999999987
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=8.6e-15 Score=162.37 Aligned_cols=159 Identities=19% Similarity=0.161 Sum_probs=106.9
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec------------CeEE
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN------------GTRI 987 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~------------~~~i 987 (1527)
+...+|+++|++|+|||||+++|+...... +....++++.....+.++ ...+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNP----------------KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCC----------------EEEEEEEEEEEEEEEEEEC-------CCEEEEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCc----------------CCCCceeEEEEEEEEEECCccccccccCceeEEE
Confidence 456799999999999999999998542110 001112222222233333 5689
Q ss_pred EEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHH----cCCccEEEEeccCCCCCChhhhHHHHH
Q psy1758 988 NIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKALK----LGFKPIVVVNKIDRSNARPEWVVDATF 1062 (1527)
Q Consensus 988 niiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~ 1062 (1527)
+||||||+.+|...+..+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+...+.. ..+++.
T Consensus 87 ~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v-~~~~~~ 165 (217)
T 2f7s_A 87 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREV-NERQAR 165 (217)
T ss_dssp EEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCS-CHHHHH
T ss_pred EEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccccccc-CHHHHH
Confidence 9999999999999999999999999999999874322222222 22221 46899999999998653210 112222
Q ss_pred HHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1063 DLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1063 ~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.... ...++++++||++|. |+++++++|.+.+.
T Consensus 166 ~~~~-------~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 166 ELAD-------KYGIPYFETSAATGQ----------NVEKAVETLLDLIM 198 (217)
T ss_dssp HHHH-------HTTCCEEEEBTTTTB----------THHHHHHHHHHHHH
T ss_pred HHHH-------HCCCcEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 2221 124689999999998 99999999887653
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-14 Score=158.32 Aligned_cols=159 Identities=20% Similarity=0.166 Sum_probs=109.0
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
+...+|+++|++|+|||||+++|+...-.. +....++++.....+.+++ +.++||||||+.+
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 87 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPP----------------GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT----------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCC----------------CCCCccceeEEEEEEEECCEEEEEEEEECCCcHH
Confidence 456799999999999999999998642110 0112222333334455555 5899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|......+++.+|++|+|+|+++....+. ...+..+.. .++|+++|+||+|+.+.+. -..++......
T Consensus 88 ~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~-v~~~~~~~~~~------- 159 (201)
T 2ew1_A 88 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERRE-VSQQRAEEFSE------- 159 (201)
T ss_dssp GHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCS-SCHHHHHHHHH-------
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc-cCHHHHHHHHH-------
Confidence 99888888999999999999987432221 233333333 3688999999999864321 01122222111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...+|++++||++|. |++++++.+.+.+.
T Consensus 160 ~~~~~~~~~Sa~~g~----------gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 160 AQDMYYLETSAKESD----------NVEKLFLDLACRLI 188 (201)
T ss_dssp HHTCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HcCCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 124579999999998 99999999987764
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=158.39 Aligned_cols=165 Identities=16% Similarity=0.132 Sum_probs=106.8
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEE---ecCeEEEEEeCC
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE---YNGTRINIIDTP 993 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~---~~~~~iniiDTP 993 (1527)
.+.++..+|+++|..|+|||||+++|++... .. ...|.+.......+. ...+.++|||||
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~---~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~ 77 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMS---PN--------------ETLFLESTNKIYKDDISNSSFVNFQIWDFP 77 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCC---GG--------------GGGGCCCCCSCEEEEECCTTSCCEEEEECC
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCC---Cc--------------ceeeeccccceeeeeccCCCeeEEEEEECC
Confidence 3445677999999999999999998865311 10 111222222223333 345789999999
Q ss_pred CCCCchHHH---HHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHH-----cCCccEEEEeccCCCCCCh-----hhhHHH
Q psy1758 994 GHADFGGEV---ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK-----LGFKPIVVVNKIDRSNARP-----EWVVDA 1060 (1527)
Q Consensus 994 Gh~df~~ev---~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~-----~glp~IvviNKiD~~~a~~-----~~v~~~ 1060 (1527)
|+.+|.... ..+++.+|++|+|+|+++........+...+.+ .++|+++|.||+|+.+.+. ..+..+
T Consensus 78 G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~ 157 (196)
T 3llu_A 78 GQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQR 157 (196)
T ss_dssp SSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred CCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHH
Confidence 999998877 789999999999999998733333333333333 3789999999999865321 111111
Q ss_pred HHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1061 TFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1061 ~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
....+.... .....++++.+||++ . |++++++.+++.+
T Consensus 158 ~~~~~~~~~--~~~~~~~~~e~Sa~~-~----------~v~~~f~~l~~~l 195 (196)
T 3llu_A 158 ANDDLADAG--LEKLHLSFYLTSIYD-H----------SIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHTT--CTTSCEEEEEECTTS-T----------HHHHHHHHHHHHT
T ss_pred HHHHHHHhh--hhcCCcceEEEEech-h----------hHHHHHHHHHHHh
Confidence 112121111 113457899999999 8 9999999998754
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-15 Score=161.70 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=106.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
+...+|+++|++|+|||||+++|+...... +..+.++.+.....+.+++ +.++||||||+.+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 86 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQ----------------DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC----------------------------CCEEEEEEEETTEEEEEEEECCTTHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCc----------------cCCCcccceeEEEEEEECCeeeEEEEEcCCCcHh
Confidence 456799999999999999999998542110 0112222222333444555 7899999999988
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|...+..+++.+|++|+|+|++++...+. ...+..+.. .++|+++|+||+|+...+.. ...+......
T Consensus 87 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~------- 158 (200)
T 2o52_A 87 FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREV-TFLEASRFAQ------- 158 (200)
T ss_dssp HSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCS-CHHHHHHHHH-------
T ss_pred HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccc-CHHHHHHHHH-------
Confidence 88888889999999999999987433222 223333333 37899999999998643211 1122222211
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...++++++||++|. |++++++.|.+.+.
T Consensus 159 ~~~~~~~~~SA~~g~----------gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 159 ENELMFLETSALTGE----------NVEEAFLKCARTIL 187 (200)
T ss_dssp HTTCEEEEECTTTCT----------THHHHHHHHHHHHH
T ss_pred HcCCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 124689999999998 99999999887664
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-14 Score=151.97 Aligned_cols=156 Identities=19% Similarity=0.157 Sum_probs=95.9
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCch
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~ 999 (1527)
..+|+++|++|+|||||+++|+......... ...+.+.....+.+++ +.+.+|||||+.+|.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 65 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHE----------------MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAG 65 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC----------------------------CEEEEEEEETTEEEEEEEECCCCC----
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccccc----------------CCCcCCeeeEEEEECCeEEEEEEEECCCccccc
Confidence 4689999999999999999997542221110 1112222223334444 678899999999987
Q ss_pred H-HHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHHc----CCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 1000 G-EVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALKL----GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 1000 ~-ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~~----glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
. .....++.+|++++|+|+++.... .....+..+... ++|+++|+||+|+.+.+. ...++......
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~------- 137 (169)
T 3q85_A 66 GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSRE-VSLEEGRHLAG------- 137 (169)
T ss_dssp ----CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC-SCHHHHHHHHH-------
T ss_pred hhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhccc-CCHHHHHHHHH-------
Confidence 6 444568899999999999873211 222333333332 789999999999864321 11122222111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...+|++++||++|. |++++++.+.+.+
T Consensus 138 ~~~~~~~~~Sa~~~~----------~v~~l~~~l~~~i 165 (169)
T 3q85_A 138 TLSCKHIETSAALHH----------NTRELFEGAVRQI 165 (169)
T ss_dssp HTTCEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred HcCCcEEEecCccCC----------CHHHHHHHHHHHH
Confidence 124579999999998 9999999998765
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=172.50 Aligned_cols=158 Identities=15% Similarity=0.124 Sum_probs=109.7
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
+..+|+|+|++|+|||||+++|+... +. .. . .|+......+.++++.++||||||+.+|..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~--~~----------~~---~----pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 224 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGE--IV----------TT---I----PTIGFNVETVEYKNISFTVWDVGGQDKIRP 224 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSC--CE----------EE---E----EETTEEEEEEEETTEEEEEEECC-----CC
T ss_pred CcceEEEECCCCccHHHHHHHHhCCC--CC----------Cc---c----cccceEEEEEecCcEEEEEEECCCCHhHHH
Confidence 44689999999999999999997542 10 00 1 144444566788999999999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
....+++.+|++|+|+|+++.... .....+..... .++|+++|+||+|+.+... .+++...+.... ....
T Consensus 225 ~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~i~~~~~~~~--~~~~ 299 (329)
T 3o47_A 225 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHS--LRHR 299 (329)
T ss_dssp SHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTCTT--CCSS
T ss_pred HHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC---HHHHHHHhchhh--hhcC
Confidence 999999999999999999864332 22333333322 2789999999999986542 223333222111 1224
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.+|++++||++|. |+++|++.|.+.+.
T Consensus 300 ~~~~~~vSAk~g~----------gi~el~~~l~~~l~ 326 (329)
T 3o47_A 300 NWYIQATCATSGD----------GLYEGLDWLSNQLR 326 (329)
T ss_dssp CEEEEECBTTTTB----------THHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCc----------CHHHHHHHHHHHHH
Confidence 5789999999998 99999999988764
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-14 Score=155.45 Aligned_cols=160 Identities=15% Similarity=0.126 Sum_probs=107.6
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
...+|+++|++|+|||||+++|+......... ...+.+.. ....+....+.+.||||||+.+|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--------------~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~ 71 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYI--------------PTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPA 71 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTS--------------CCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCccc--------------Ccccccee-EEEEECCEEEEEEEEeCCChHHhHH
Confidence 45689999999999999999998642110000 01111111 1122222346899999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH-----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~-----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
....+++.+|++++|+|+++... .....++..+.+ .++|+++|+||+|+...... .++.......
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~------- 142 (199)
T 2gf0_A 72 MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVD--TREAQAVAQE------- 142 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSC--HHHHHHHHHH-------
T ss_pred HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccC--HHHHHHHHHH-------
Confidence 99999999999999999986322 122233333333 36899999999999753211 1222221111
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
..++++++||++|. |+++++++|.+.+...
T Consensus 143 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 143 WKCAFMETSAKMNY----------NVKELFQELLTLETRR 172 (199)
T ss_dssp HTCEEEECBTTTTB----------SHHHHHHHHHHHCSSS
T ss_pred hCCeEEEEecCCCC----------CHHHHHHHHHHHHhhh
Confidence 23579999999998 9999999999987644
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.53 E-value=5.2e-15 Score=159.18 Aligned_cols=168 Identities=15% Similarity=0.077 Sum_probs=107.2
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
+..+|+++|++|+|||||+++|+...-.-...+. .+.+. .....+....+.+.||||||+.+|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t--------------~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~ 68 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT--------------VFDNY-SANVMVDGKPVNLGLWDTAGQEDYDR 68 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCC--------------SCCEE-EEEEEETTEEEEEEEECCCCSGGGTT
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCc--------------cccee-EEEEEECCEEEEEEEEECCCCHhHHH
Confidence 3468999999999999999999864211110000 01111 11112222345778999999999988
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHH------hhhcc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLF------DKLCA 1070 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~--~~~~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~------~~l~~ 1070 (1527)
....+++.+|++++|+|++++...+.. .++..+... ++|+++|+||+|+.... ...+.+.+.. .+...
T Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~ 146 (186)
T 1mh1_A 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK--DTIEKLKEKKLTPITYPQGLA 146 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH--HHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccc--hhhhhhcccccccCCHHHHHH
Confidence 877888999999999999874333222 233344443 89999999999986542 1111111100 00000
Q ss_pred cccccCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCC
Q psy1758 1071 TEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 1115 (1527)
Q Consensus 1071 ~~~~~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 1115 (1527)
......+ |++++||++|. |++++++.+.+.++.|.
T Consensus 147 ~~~~~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 147 MAKEIGAVKYLECSALTQR----------GLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp HHHHTTCSEEEECCTTTCT----------THHHHHHHHHHHHSCCC
T ss_pred HHHhcCCcEEEEecCCCcc----------CHHHHHHHHHHHHhccc
Confidence 0011233 89999999998 99999999999887654
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-14 Score=155.99 Aligned_cols=174 Identities=18% Similarity=0.152 Sum_probs=107.7
Q ss_pred cCcccccccccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--e
Q psy1758 908 HGQNLFLSDENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--T 985 (1527)
Q Consensus 908 nG~~i~lsq~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~ 985 (1527)
.|+.....+.+.+...+|+++|.+|+|||||+++|+.....+... .+++.+.....+.+++ +
T Consensus 9 ~~~~~~~~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~ 72 (195)
T 3cbq_A 9 SGRENLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE----------------PENPEDTYERRIMVDKEEV 72 (195)
T ss_dssp -------------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGT----------------TTSCTTEEEEEEEETTEEE
T ss_pred CCCccccCCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCC----------------CCcccceEEEEEEECCEEE
Confidence 344444445555677899999999999999999997543322111 1122222223344444 5
Q ss_pred EEEEEeCCCCCCchH-HHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHH
Q psy1758 986 RINIIDTPGHADFGG-EVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVD 1059 (1527)
Q Consensus 986 ~iniiDTPGh~df~~-ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~ 1059 (1527)
.+.||||||+.+|.. ....+++.+|++|+|+|+++... ......+..+.. .++|+++|.||+|+...+.. ..+
T Consensus 73 ~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v-~~~ 151 (195)
T 3cbq_A 73 TLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREV-SLE 151 (195)
T ss_dssp EEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCS-CHH
T ss_pred EEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCc-CHH
Confidence 778999999998876 44556889999999999986321 122233333333 37899999999999754311 122
Q ss_pred HHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCC
Q psy1758 1060 ATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 1115 (1527)
Q Consensus 1060 ~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 1115 (1527)
+....... ..++++.+||++|. |++++++.+++.+....
T Consensus 152 ~~~~~a~~-------~~~~~~e~Sa~~~~----------~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 152 EGRHLAGT-------LSCKHIETSAALHH----------NTRELFEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHH-------TTCEEEEEBTTTTB----------SHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHH-------hCCEEEEEcCCCCC----------CHHHHHHHHHHHHHHhc
Confidence 22222111 23579999999998 99999999998886544
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.1e-15 Score=160.04 Aligned_cols=160 Identities=16% Similarity=0.091 Sum_probs=107.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~d 997 (1527)
....+|+++|++|+|||||+++|+.........+ ..|.+.. ..+.++ .+.++||||||+.+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~--------------t~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~ 83 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVP--------------TVFENFS---HVMKYKNEEFILHLWDTAGQEE 83 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCC--------------CSEEEEE---EEEEETTEEEEEEEEEECCSGG
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCC--------------eeeeeeE---EEEEECCEEEEEEEEECCCcHH
Confidence 3457999999999999999999986532111011 1122221 123333 35679999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhH--HHHHHHHHHc--CCccEEEEeccCCCCCCh-hhhHHHHHHHHhhhcccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQT--RFVTRKALKL--GFKPIVVVNKIDRSNARP-EWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt--~~~~~~~~~~--glp~IvviNKiD~~~a~~-~~v~~~~~~~~~~l~~~~ 1072 (1527)
|......+++.+|++++|+|+++....+. ..++..+... ++|+++|+||+|+...+. ....++.......+
T Consensus 84 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---- 159 (194)
T 3reg_A 84 YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKL---- 159 (194)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHH----
T ss_pred HHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhc----
Confidence 99888889999999999999987432222 2222333333 689999999999875321 11223333322222
Q ss_pred cccCCc-EEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1073 EQLDFP-VIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1073 ~~~~~p-vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
.++ ++++||++|. |++++++.+.+.+..
T Consensus 160 ---~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 160 ---GCVAYIEASSVAKI----------GLNEVFEKSVDCIFS 188 (194)
T ss_dssp ---TCSCEEECBTTTTB----------SHHHHHHHHHHHHHC
T ss_pred ---CCCEEEEeecCCCC----------CHHHHHHHHHHHHHh
Confidence 344 8999999998 999999999987743
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.52 E-value=4.8e-15 Score=159.03 Aligned_cols=162 Identities=15% Similarity=0.095 Sum_probs=101.2
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
...+|+++|++|+|||||+++|+.........+.+ |... .....+......++||||||+.+|..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~ 71 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV--------------FDNF-SANVVVNGATVNLGLWDTAGQEDYNR 71 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC------------------------C-BCCCC-------CEEECCCC-CTTTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCee--------------eeeE-EEEEEECCEEEEEEEEECCCChhhhh
Confidence 44689999999999999999998653111100100 0000 00111222346678999999999998
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCccEEEEeccCCCCCChh---------hhHHHHHHHHhh
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKL--GFKPIVVVNKIDRSNARPE---------WVVDATFDLFDK 1067 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~--~~~~~~~~~--glp~IvviNKiD~~~a~~~---------~v~~~~~~~~~~ 1067 (1527)
....+++.+|++++|+|+++....+.. .++..+... ++|+++|+||+|+.+.+.. -..++.......
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~ 151 (182)
T 3bwd_D 72 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKL 151 (182)
T ss_dssp TGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHH
T ss_pred hHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHH
Confidence 888889999999999999874322222 233333332 7899999999998654311 011222221111
Q ss_pred hcccccccC-CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1068 LCATEEQLD-FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1068 l~~~~~~~~-~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.. .|++++||++|. |++++++.+.+.+..|
T Consensus 152 -------~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 152 -------IGAPAYIECSSKSQE----------NVKGVFDAAIRVVLQP 182 (182)
T ss_dssp -------HTCSEEEECCTTTCT----------THHHHHHHHHHHHSCC
T ss_pred -------cCCCEEEEEECCCCC----------CHHHHHHHHHHHHhcC
Confidence 12 379999999998 9999999999887654
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-14 Score=158.93 Aligned_cols=163 Identities=16% Similarity=0.099 Sum_probs=107.2
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
..+..+|+++|++|+|||||+++|+........ ....+.+. .....+...++.++||||||+.+|
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~ 85 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY--------------DPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEY 85 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC--------------CCCSEEEE-EEEEC----CEEEEEEEECCCCTT
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC--------------CCccceEE-EEEEEECCEEEEEEEEECCCccch
Confidence 345689999999999999999999865221110 01122222 233334456788999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
......+++.+|++++|+|+++....+. ...+..+.. .++|+++|+||+|+...+... ..+.......
T Consensus 86 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~-~~~~~~~~~~------ 158 (201)
T 3oes_A 86 SILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQ-AVEGKKLAES------ 158 (201)
T ss_dssp CCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSC-HHHHHHHHHH------
T ss_pred HHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccC-HHHHHHHHHH------
Confidence 8888888999999999999986422222 222333332 378999999999986433111 1111221111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
..+|++.+||++|. |++++++.|.+.+...
T Consensus 159 -~~~~~~~~Sa~~~~----------~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 159 -WGATFMESSARENQ----------LTQGIFTKVIQEIARV 188 (201)
T ss_dssp -HTCEEEECCTTCHH----------HHHHHHHHHHHHHHHC
T ss_pred -hCCeEEEEeCCCCC----------CHHHHHHHHHHHHHhh
Confidence 23579999999998 9999999998877443
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.8e-14 Score=153.48 Aligned_cols=156 Identities=14% Similarity=0.156 Sum_probs=96.1
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df 998 (1527)
+..+|+++|++|+|||||+++|+......... ...+.. ....+.+++ +.+.||||||+.+|
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--------------~t~~~~---~~~~~~~~~~~~~~~l~Dt~G~~~~ 82 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYD--------------PTIEDS---YRKQVVIDGETCLLDILDTAGQEEY 82 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCC--------------TTCCEE---EEEEEEETTEEEEEEEEECCC----
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccC--------------CccceE---EEEEEEECCEEEEEEEEECCChHHH
Confidence 34689999999999999999998652110000 001111 112334444 56999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
......++..+|++++|+|+++....+. ..++..+.. .++|+++|+||+|+..... ..+++.+....
T Consensus 83 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~------ 154 (190)
T 3con_A 83 SAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTV--DTKQAHELAKS------ 154 (190)
T ss_dssp -------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCS--CHHHHHHHHHH------
T ss_pred HHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccC--CHHHHHHHHHH------
Confidence 9988899999999999999987533222 222233332 3789999999999865221 12233332222
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..+|++++||++|. |+++++++|.+.+.
T Consensus 155 -~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 182 (190)
T 3con_A 155 -YGIPFIETSAKTRQ----------GVEDAFYTLVREIR 182 (190)
T ss_dssp -HTCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred -cCCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 23579999999998 99999999987664
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-14 Score=160.12 Aligned_cols=161 Identities=17% Similarity=0.114 Sum_probs=106.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
....+|+++|++|+|||||+++|+...-.. ......|.+....... ..++ +.++||||||+.+
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~ 73 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEK--------------NYNATVGAVNHPVTFL-DDQGNVIKFNVWDTAGQEK 73 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTC--------------EEETTTTEEEEEEEEE-BTTSCEEEEEEEEECSGGG
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccceeeEEEEEE-eCCCcEEEEEEEecCCchh
Confidence 345799999999999999999998542110 0011122322221111 1122 6899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|.......+..+|++|+|+|++++...+....| ..+.. .++|+++|+||+|+...+. ...++..... .
T Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~-------~ 145 (218)
T 4djt_A 74 KAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQK-ISKKLVMEVL-------K 145 (218)
T ss_dssp TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-----CCHHHHHHHT-------T
T ss_pred hchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc-cCHHHHHHHH-------H
Confidence 988888889999999999999986443333222 33332 3689999999999865321 1111121111 1
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
...++++++||++|. |++++++.+.+.+..
T Consensus 146 ~~~~~~~~~Sa~~g~----------gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 146 GKNYEYFEISAKTAH----------NFGLPFLHLARIFTG 175 (218)
T ss_dssp TCCCEEEEEBTTTTB----------TTTHHHHHHHHHHHC
T ss_pred HcCCcEEEEecCCCC----------CHHHHHHHHHHHHhc
Confidence 235689999999998 999999999987754
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-14 Score=161.77 Aligned_cols=160 Identities=16% Similarity=0.183 Sum_probs=107.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
+...+|+++|++|+|||||+++|+....... ..+.++.......+.+++ +.+.||||||+.+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 74 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMD----------------SKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC----------------------CCSEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCC----------------CCCcccceeEEEEEEECCEEEEEEEEECCCccc
Confidence 4567999999999999999999986522111 011222223333455555 6899999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|...+..+++.+|++|+|+|++++...+. ..++..+... ++|+++|+||+|+...+.. ..++......
T Consensus 75 ~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~------- 146 (223)
T 3cpj_B 75 YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAV-PTEESKTFAQ------- 146 (223)
T ss_dssp TTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCS-CHHHHHHHHH-------
T ss_pred hhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccc-CHHHHHHHHH-------
Confidence 98888888999999999999987533232 2233344433 7899999999998643210 1122222211
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
...+|++++||++|. |+++++++|.+.+..
T Consensus 147 ~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 147 ENQLLFTETSALNSE----------NVDKAFEELINTIYQ 176 (223)
T ss_dssp HTTCEEEECCCC-CC----------CHHHHHHHHHHHHTT
T ss_pred HcCCEEEEEeCCCCC----------CHHHHHHHHHHHHHH
Confidence 124579999999998 999999999988754
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-14 Score=159.44 Aligned_cols=161 Identities=16% Similarity=0.134 Sum_probs=82.0
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec----CeEEEEEeCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN----GTRINIIDTPGH 995 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~----~~~iniiDTPGh 995 (1527)
....+|+++|++|+|||||+++|+.....+.. +....+.++.....+.++ .+.+.||||||+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 83 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLK--------------DYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS 83 (208)
T ss_dssp EEEEEEEEC------------------------------------------------CEEEECTTSSEEEEEEEEETTTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccC--------------CCCCccceEEEEEEEEECCcccEEEEEEEECCCc
Confidence 45579999999999999999999854111110 000111122333455555 468999999999
Q ss_pred CCchHHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH------cCCccEEEEeccCCCC-CChhhhHHHHHHHHhh
Q psy1758 996 ADFGGEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK------LGFKPIVVVNKIDRSN-ARPEWVVDATFDLFDK 1067 (1527)
Q Consensus 996 ~df~~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~------~glp~IvviNKiD~~~-a~~~~v~~~~~~~~~~ 1067 (1527)
.+|...+..+++.+|++|+|+|++++... ....++..+.. .++|+++|+||+|+.. .+. -..+++.+....
T Consensus 84 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~-v~~~~~~~~~~~ 162 (208)
T 2yc2_C 84 DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ-VRLDMAQDWATT 162 (208)
T ss_dssp HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------C-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhcc-CCHHHHHHHHHH
Confidence 99988888888999999999999875332 22333344443 4789999999999975 221 112233332222
Q ss_pred hcccccccCCcEEEecccc-CCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1068 LCATEEQLDFPVIYTSALH-GYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1068 l~~~~~~~~~pvi~~SA~~-g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..++++++||++ |. |++++++.|.+.+.
T Consensus 163 -------~~~~~~~~Sa~~~~~----------gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 163 -------NTLDFFDVSANPPGK----------DADAPFLSIATTFY 191 (208)
T ss_dssp -------TTCEEEECCC-----------------CHHHHHHHHHHH
T ss_pred -------cCCEEEEeccCCCCc----------CHHHHHHHHHHHHH
Confidence 236899999999 98 99999999987653
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.6e-15 Score=185.01 Aligned_cols=156 Identities=19% Similarity=0.192 Sum_probs=99.9
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEE------EEEe----CCeEEEEEeCCChhhHHHHHHh
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAY------NVVT----NHGSITFLDTPGHEAFTAMRAR 135 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~------~~~~----~~~~i~~iDTPG~e~f~~~~~~ 135 (1527)
..+..+|+++|++|+|||||+++|++..+.....+++..++... .+.. .+..+.+|||||++.|..+...
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 34668999999999999999999999887655555444444322 1111 2458999999999999988888
Q ss_pred hccccCEEEEEEeCCCCCcHHHHHHHHHHHHc--CCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeec
Q psy1758 136 GAKVTDIVVLVVAADDGVMPQTREAIAHAKIS--GVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 136 ~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~--~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSA 213 (1527)
+++.+|++|+|+|+++. .....++..+... +.|+|+|+||+|+.+...... ...... .... ..+++++||
T Consensus 118 ~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~-~~~~~~---~~~~--~~~~~~vSA 189 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQ-KKINER---FPAI--ENRFHRISC 189 (535)
T ss_dssp HHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCH-HHHHHH---CGGG--TTCEEECCC
T ss_pred HccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCH-HHHHHH---HHhc--CCceEEEec
Confidence 88999999999999874 3333444444443 599999999999975321111 111111 1111 247999999
Q ss_pred cCCCChhHHHHHHHHH
Q psy1758 214 KTGVGINKLLENISLQ 229 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~ 229 (1527)
++|.||++|++.|...
T Consensus 190 ~~g~gi~eL~~~l~~~ 205 (535)
T 3dpu_A 190 KNGDGVESIAKSLKSA 205 (535)
T ss_dssp -----CTTHHHHHHHH
T ss_pred CcccCHHHHHHHHHHH
Confidence 9999999999999754
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-14 Score=153.57 Aligned_cols=153 Identities=15% Similarity=0.178 Sum_probs=113.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeE--EEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGS--ITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~--i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
...+|+++|++|+|||||+++|.+..+.....++++.+.....+.+++.. +.+|||||+++|..++..+++.+|++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 34789999999999999999999988877777777877777778888764 5579999999988888888889999999
Q ss_pred EEeCCCCCcHHHH-HHHHHHH---HcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQTR-EAIAHAK---ISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt~-e~i~~~~---~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|.++....+.. .++..+. ..+.|+++++||+|+.+... ......+.. . ..++++++||+++.|+
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~------~--~~~~~ld~Sald~~~v 179 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE------K--NGLSFIETSALDSTNV 179 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------H--TTCEEEECCTTTCTTH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHH------H--cCCEEEEEeCCCCCCH
Confidence 9999874322221 1222222 24678999999999864211 111111211 1 1257899999999999
Q ss_pred hHHHHHHHH
Q psy1758 220 NKLLENISL 228 (1527)
Q Consensus 220 ~eL~~~l~~ 228 (1527)
+++++.|..
T Consensus 180 ~~l~~~l~~ 188 (191)
T 1oix_A 180 EAAFQTILT 188 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999864
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.4e-15 Score=163.53 Aligned_cols=143 Identities=22% Similarity=0.279 Sum_probs=89.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccccc---ccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccc----
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVF---SEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKV---- 139 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~---~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~---- 139 (1527)
.+.++|+++|++|+|||||+++|.+..+.. +..++++.+. ....+.+|||||++.|...+..+++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 82 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 82 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------GGSSCEEEECCCCGGGTHHHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------eCceEEEEECCCcHHHHHHHHHHHHhcccc
Confidence 467899999999999999999999887543 2334333322 45689999999999998888888876
Q ss_pred cCEEEEEEeCC-CC-CcHHHHHHHHHHH-------HcCCCEEEEEEcccCCcchh-HHHHHHHhhhc-ccccccCCCCcE
Q psy1758 140 TDIVVLVVAAD-DG-VMPQTREAIAHAK-------ISGVPLIVAINKIDKLDINL-DRIKQDLISEQ-VIPEEYGGASPF 208 (1527)
Q Consensus 140 aD~~IlVvda~-~g-~~~qt~e~i~~~~-------~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~-~~~~~~~~~~~v 208 (1527)
+|++++|+|++ +. ......+.+..+. ..++|+++|+||+|+..... ......+.... ...... ..++
T Consensus 83 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~--~~~~ 160 (218)
T 1nrj_B 83 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR--KKSL 160 (218)
T ss_dssp EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHH--hccc
Confidence 89999999998 32 2222222222221 25899999999999976533 22222221111 000111 1468
Q ss_pred EEeeccCCCC
Q psy1758 209 ISISAKTGVG 218 (1527)
Q Consensus 209 ~~iSAktg~g 218 (1527)
+++||++|.+
T Consensus 161 ~~~Sa~~~~~ 170 (218)
T 1nrj_B 161 NEVERKINEE 170 (218)
T ss_dssp HC--------
T ss_pred cccccccccc
Confidence 8999998875
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-14 Score=163.58 Aligned_cols=153 Identities=17% Similarity=0.224 Sum_probs=91.9
Q ss_pred CCEEEEEecCCCChhHHHHHHHcccccc-cc-------CCceeEEEEEEEEEeCCe--EEEEEeCCCh-------hhHHH
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVF-SE-------AGGITQHIGAYNVVTNHG--SITFLDTPGH-------EAFTA 131 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~-~~-------~~giT~~~~~~~~~~~~~--~i~~iDTPG~-------e~f~~ 131 (1527)
..+|+++|++|+|||||+|+|....... .. .++++.+.....+..++. ++++|||||+ +.|..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 3689999999999999999987766433 32 445556666565655554 8999999997 22333
Q ss_pred HH-------Hhhcc-------------ccCEEEEEEeCCC-CCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh-HHHH
Q psy1758 132 MR-------ARGAK-------------VTDIVVLVVAADD-GVMPQTREAIAHAKISGVPLIVAINKIDKLDINL-DRIK 189 (1527)
Q Consensus 132 ~~-------~~~~~-------------~aD~~IlVvda~~-g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~-~~~~ 189 (1527)
+. ..++. .+|+++++++... +..+...+.+..+.. ++|+|+|+||+|+..... ....
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~ 166 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFK 166 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHH
Confidence 32 22222 2779999987665 788888888888776 899999999999875322 1222
Q ss_pred HHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHH
Q psy1758 190 QDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227 (1527)
Q Consensus 190 ~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~ 227 (1527)
..+.... . ...++++++||+++.|++++++.|.
T Consensus 167 ~~i~~~l---~--~~~i~v~~~sa~~~~~~~~l~~~l~ 199 (274)
T 3t5d_A 167 KQIMKEI---Q--EHKIKIYEFPETDDEEENKLVKKIK 199 (274)
T ss_dssp HHHHHHH---H--HTTCCCCCC-----------CHHHH
T ss_pred HHHHHHH---H--HcCCeEEcCCCCCChhHHHHHHHHh
Confidence 2221111 0 1235788999999999999999885
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=155.59 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=105.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCC--ceeEEEEEEEEEeCCeEEEEEeCCC-----------hhhHHHHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAG--GITQHIGAYNVVTNHGSITFLDTPG-----------HEAFTAMR 133 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~--giT~~~~~~~~~~~~~~i~~iDTPG-----------~e~f~~~~ 133 (1527)
.+.++|+++|++|+|||||+++|.+..+.....+ ++|.+.....+.+++..++|||||| .+.+....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 106 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCI 106 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHH
Confidence 3567999999999999999999999887655554 7788888888889999999999999 45666777
Q ss_pred HhhccccCEEEEEEeCCCCCcHHHHHHHHHHH-----HcCCCEEEEEEcccCCcch-hHHHHHHHh-hhcccccccCCCC
Q psy1758 134 ARGAKVTDIVVLVVAADDGVMPQTREAIAHAK-----ISGVPLIVAINKIDKLDIN-LDRIKQDLI-SEQVIPEEYGGAS 206 (1527)
Q Consensus 134 ~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~-----~~~vpiIvviNKiDl~~~~-~~~~~~~l~-~~~~~~~~~~~~~ 206 (1527)
..++..+|++|+|+|++. ......+.+..+. ....|+++|+||+|+.... ..+...... ......+.++.
T Consensus 107 ~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~-- 183 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD-- 183 (239)
T ss_dssp HHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS--
T ss_pred HhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC--
Confidence 777788999999999975 3333333333321 2456999999999986532 111111000 00111223332
Q ss_pred cEEEeeccC-----CCChhHHHHHHHHHH
Q psy1758 207 PFISISAKT-----GVGINKLLENISLQA 230 (1527)
Q Consensus 207 ~v~~iSAkt-----g~gI~eL~~~l~~~~ 230 (1527)
.++.+++.. +.|+.+|++.+....
T Consensus 184 ~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 184 RYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp SEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 466666554 368999999886543
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-14 Score=154.19 Aligned_cols=157 Identities=24% Similarity=0.275 Sum_probs=102.1
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCC------
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA------ 996 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~------ 996 (1527)
.+|+++|++|+|||||+++|+...-. .+..+|+|...... .+. .+++|||||+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~ 61 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR----------------RGKRPGVTRKIIEI--EWK--NHKIIDMPGFGFMMGLP 61 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS----------------SSSSTTCTTSCEEE--EET--TEEEEECCCBSCCTTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc----------------cCCCCCccceeEEE--ecC--CEEEEECCCccccccCC
Confidence 58999999999999999999865211 11223555443332 333 68999999953
Q ss_pred -----CchHHHHHHHHh----cCEEEEEEeCCC-----------CCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhh
Q psy1758 997 -----DFGGEVERILSM----VDNVLLLIDAVE-----------GPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEW 1056 (1527)
Q Consensus 997 -----df~~ev~~~l~~----aD~ailVVDa~~-----------G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~ 1056 (1527)
.|...+..+++. +++++.|+|+.. +..+++..++..+...++|+++|+||+|+...+ .+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~ 140 (190)
T 2cxx_A 62 KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QE 140 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HH
T ss_pred HHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HH
Confidence 344444444443 567777777753 222334445556666799999999999997654 33
Q ss_pred hHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1057 VVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1057 v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
..+++... ++........+++++||++|. |++++++.+.+.++.
T Consensus 141 ~~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~----------~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 141 VINFLAEK---FEVPLSEIDKVFIPISAKFGD----------NIERLKNRIFEVIRE 184 (190)
T ss_dssp HHHHHHHH---HTCCGGGHHHHEEECCTTTCT----------THHHHHHHHHHHHHH
T ss_pred HHHHHHHH---hhhhhhccCCcEEEEecCCCC----------CHHHHHHHHHHhcch
Confidence 33333332 222111112368999999998 999999999887753
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-14 Score=159.04 Aligned_cols=163 Identities=14% Similarity=0.094 Sum_probs=104.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~d 997 (1527)
.+..+|+++|++|+|||||+++|+.....-.. .+++.......+.++ .+.++||||||+.+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY-----------------IPTVFDNYSANVMVDGKPVNLGLWDTAGLED 90 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-C-----------------CCCSEEEEEEEEECC-CEEEEEEEEECCSGG
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc-----------------CCeecceeEEEEEECCEEEEEEEEECCCchh
Confidence 34579999999999999999999865221111 111111122223333 35677999999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHH------hh
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLF------DK 1067 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt~--~~~~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~------~~ 1067 (1527)
|......+++.+|++++|+|++++...+.. .++..+... ++|+++|+||+|+...+. ..+.+.+.. .+
T Consensus 91 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~ 168 (204)
T 4gzl_A 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD--TIEKLKEKKLTPITYPQ 168 (204)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHH--HHHHHHHTTCCCCCHHH
T ss_pred hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchh--hhhhhhccccccccHHH
Confidence 998888889999999999999975433332 233344444 899999999999875431 111111100 00
Q ss_pred hcccccccC-CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1068 LCATEEQLD-FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1068 l~~~~~~~~-~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
......... .|++++||++|. |++++++.+.+.+
T Consensus 169 ~~~~~~~~~~~~~~~~SA~~g~----------gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 169 GLAMAKEIGAVKYLECSALTQR----------GLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHHHHTTCSEEEECCTTTCT----------THHHHHHHHHHTT
T ss_pred HHHHHHhcCCcEEEEeeCCCCC----------CHHHHHHHHHHHh
Confidence 000001112 369999999998 9999999998754
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-14 Score=156.99 Aligned_cols=163 Identities=13% Similarity=0.081 Sum_probs=106.3
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df 998 (1527)
...+|+++|++|+|||||+++|+.........+. .|.+. ...+.++ .+.++||||||+.+|
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t--------------~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~~ 70 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT--------------VFDNF---SANVAVDGQIVNLGLWDTAGQEDY 70 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCS--------------SCCCE---EEEEECSSCEEEEEEECCCCCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCc--------------cceeE---EEEEEECCEEEEEEEEECCCcHHH
Confidence 4578999999999999999999864211110000 11111 1122333 368999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCccEEEEeccCCCCCChh-------hhHHHHHHHHhh
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKL--GFKPIVVVNKIDRSNARPE-------WVVDATFDLFDK 1067 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~--~~~~~~~~~--glp~IvviNKiD~~~a~~~-------~v~~~~~~~~~~ 1067 (1527)
......+++.+|++|+|+|+++....+.. .++..+... ++|+++|+||+|+.+.+.. -..++.......
T Consensus 71 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~ 150 (212)
T 2j0v_A 71 SRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQ 150 (212)
T ss_dssp CC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHH
T ss_pred HHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHH
Confidence 98888889999999999999874322221 233344443 8999999999998654210 012222222222
Q ss_pred hcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC
Q psy1758 1068 LCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD 1116 (1527)
Q Consensus 1068 l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~ 1116 (1527)
++. .+++++||++|. |++++++.+.+.+..+..
T Consensus 151 ~~~------~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 151 IGA------AAYIECSSKTQQ----------NVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp HTC------SEEEECCTTTCT----------THHHHHHHHHHHHHCC--
T ss_pred cCC------ceEEEccCCCCC----------CHHHHHHHHHHHHhhhhh
Confidence 211 378999999998 999999999988865543
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.5e-14 Score=163.00 Aligned_cols=166 Identities=16% Similarity=0.186 Sum_probs=97.7
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc-
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF- 998 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df- 998 (1527)
..+|+++|++|+|||||+|+|+.........+.. .....+++++......+.+++ ..++||||||+.++
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~ 79 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGP--------SHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAV 79 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC-----------------------CCCEEEEEEECC--CCEEEEEEECCCCSCCS
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCc--------ccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccc
Confidence 3689999999999999999997652221111000 011134455555555666665 48999999998654
Q ss_pred ------hHHH-------HHHHHh-------------cCEEEEEEeCC-CCCChhHHHHHHHHHHcCCccEEEEeccCCCC
Q psy1758 999 ------GGEV-------ERILSM-------------VDNVLLLIDAV-EGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN 1051 (1527)
Q Consensus 999 ------~~ev-------~~~l~~-------------aD~ailVVDa~-~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~ 1051 (1527)
...+ ..++.. +|+++++||++ ++..+....+++.+.. ++|+|+|+||+|+..
T Consensus 80 ~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 80 DNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLT 158 (274)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCC
Confidence 2222 445554 78899999665 4888888888888777 899999999999864
Q ss_pred CC-hhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1052 AR-PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1052 a~-~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
.. .....+.+.+.+. ...++++.+||++|. |+..+++.|.+.+|-
T Consensus 159 ~~e~~~~~~~i~~~l~-------~~~i~v~~~sa~~~~----------~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 159 PEECQQFKKQIMKEIQ-------EHKIKIYEFPETDDE----------EENKLVKKIKDRLPL 204 (274)
T ss_dssp HHHHHHHHHHHHHHHH-------HTTCCCCCC---------------------CHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHH-------HcCCeEEcCCCCCCh----------hHHHHHHHHhcCCCc
Confidence 21 1222233333221 124568889999998 899999999887763
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.9e-14 Score=156.11 Aligned_cols=166 Identities=16% Similarity=0.089 Sum_probs=106.8
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df 998 (1527)
...+|+++|++|+|||||+++|+........ ....+.+.. ..+.+++ ..+.||||||+.+|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~~ 86 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVY--------------VPTVFENYV---ADIEVDGKQVELALWDTAGQEDY 86 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------------------CCEEE---EEEEETTEEEEEEEEECTTCTTC
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcC--------------CCcccceEE---EEEEECCEEEEEEEEECCCcHHH
Confidence 4569999999999999999999865221100 001111111 1233444 67999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhH--HHHHHHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHHhh------h
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQT--RFVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDK------L 1068 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt--~~~~~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~~~------l 1068 (1527)
......+++.+|++|+|+|+++....+. ..++..+... ++|+++|+||+|+.... ...+.+.+.... .
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~ 164 (207)
T 2fv8_A 87 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE--HVRTELARMKQEPVRTDDG 164 (207)
T ss_dssp TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCH--HHHHHHHHTTCCCCCHHHH
T ss_pred HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccc--cchhhhhhcccCCCCHHHH
Confidence 8888888899999999999987422121 2233444443 89999999999986542 112221111000 0
Q ss_pred cccccccCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCC
Q psy1758 1069 CATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 1115 (1527)
Q Consensus 1069 ~~~~~~~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 1115 (1527)
........+ +++++||++|. |++++++.|.+.+..+.
T Consensus 165 ~~~~~~~~~~~~~~~SA~~g~----------gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 165 RAMAVRIQAYDYLECSAKTKE----------GVREVFETATRAALQKR 202 (207)
T ss_dssp HHHHHHTTCSEEEECCTTTCT----------THHHHHHHHHHHHHSCC
T ss_pred HHHHHhcCCCEEEEeeCCCCC----------CHHHHHHHHHHHHHHHh
Confidence 000011223 78999999998 99999999998876554
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.5e-14 Score=155.33 Aligned_cols=158 Identities=14% Similarity=0.053 Sum_probs=89.2
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df 998 (1527)
+..+|+++|++|+|||||+++|+...-.... ..++.......+.++ .+.++||||||+.+|
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 95 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESY-----------------TPTVFERYMVNLQVKGKPVHLHIWDTAGQDDY 95 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC------------------------CCCCCEEEEEEEEETTEEEEEEEEEC------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCC-----------------CCccceeEEEEEEECCEEEEEEEEECCCchhh
Confidence 3468999999999999999999854211000 001111111223333 357999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHH--HHHHHHHH--cCCccEEEEeccCCCCCChh-hhH----------HHHHH
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALK--LGFKPIVVVNKIDRSNARPE-WVV----------DATFD 1063 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~--~~~~~~~~--~glp~IvviNKiD~~~a~~~-~v~----------~~~~~ 1063 (1527)
......+++.+|++++|+|++++...+.. .++..+.. .++|+++|+||+|+...+.. +.+ ++...
T Consensus 96 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 175 (214)
T 2j1l_A 96 DRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQE 175 (214)
T ss_dssp ---------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred hHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHH
Confidence 99888899999999999999874322222 22233333 27899999999999754311 000 11111
Q ss_pred HHhhhcccccccCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1064 LFDKLCATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1064 ~~~~l~~~~~~~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.. ....+ +++++||++|. |++++++.+.+.+.
T Consensus 176 ~~-------~~~~~~~~~~~SA~~g~----------gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 176 MA-------RSVGAVAYLECSARLHD----------NVHAVFQEAAEVAL 208 (214)
T ss_dssp HH-------HHTTCSEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred HH-------HhcCCCEEEEecCCCCC----------CHHHHHHHHHHHHH
Confidence 11 11233 79999999998 99999999988764
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.7e-14 Score=154.30 Aligned_cols=162 Identities=17% Similarity=0.069 Sum_probs=104.1
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~ 996 (1527)
.....+|+++|++|+|||||+++|+...-... ..+++.......+.+++ +.+.||||||+.
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 79 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTE-----------------YIPTAFDNFSAVVSVDGRPVRLQLCDTAGQD 79 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC-------------------------CCSSEEEEEEEEETTEEEEEEEEECCCST
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------CCCcccceeEEEEEECCEEEEEEEEECCCCH
Confidence 34567999999999999999999986421100 00111111123344555 567899999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCccEEEEeccCCCCCChh-----------hhHHHH
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKL--GFKPIVVVNKIDRSNARPE-----------WVVDAT 1061 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt~--~~~~~~~~~--glp~IvviNKiD~~~a~~~-----------~v~~~~ 1061 (1527)
+|......++..+|++|+|+|+++....+.. .++..+... ++|+++|+||+|+...... ...++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 159 (201)
T 2q3h_A 80 EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAA 159 (201)
T ss_dssp TCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred HHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHH
Confidence 9988777888999999999999874322222 223333332 8899999999998653110 001111
Q ss_pred HHHHhhhcccccccCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1062 FDLFDKLCATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1062 ~~~~~~l~~~~~~~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
...... ..+ +++++||++|. |++++++.+.+.+..+
T Consensus 160 ~~~~~~-------~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 160 KLLAEE-------IKAASYIECSALTQK----------NLKEVFDAAIVAGIQY 196 (201)
T ss_dssp HHHHHH-------HTCSEEEECCTTTCT----------THHHHHHHHHHHHHHH
T ss_pred HHHHHh-------cCCcEEEEEecCCCC----------CHHHHHHHHHHHHhcc
Confidence 111111 123 79999999998 9999999998876543
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-13 Score=149.35 Aligned_cols=157 Identities=18% Similarity=0.219 Sum_probs=103.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc--ccccCCceeEEEEEEEEEeCCeEEEEEeCCChh----------hHHHHHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV--VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE----------AFTAMRA 134 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~--~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e----------~f~~~~~ 134 (1527)
.+..+|+++|++|+|||||+++|.+..+ ...+.+|+|....... +++ .+.+|||||+. .|.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~--~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE--VAD-GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE--EET-TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE--ecC-CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 4567899999999999999999988763 2344556665544333 333 68899999973 3444333
Q ss_pred hhc---cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHH-HHHHhhhcccccccCCCCcEEE
Q psy1758 135 RGA---KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRI-KQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 135 ~~~---~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~-~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
.++ ..+|++++|+|++++......+....+...++|++++.||+|+.+...... ....... ........++++
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~---~~~~~~~~~~~~ 177 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREA---VLAFNGDVQVET 177 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHH---HGGGCSCEEEEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHH---HHhcCCCCceEE
Confidence 333 578999999999987766555555666678999999999999876322111 1111111 112222357899
Q ss_pred eeccCCCChhHHHHHHHHH
Q psy1758 211 ISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 211 iSAktg~gI~eL~~~l~~~ 229 (1527)
+||+++.|++++++.|...
T Consensus 178 ~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 178 FSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp CBTTTTBSHHHHHHHHHHH
T ss_pred EeecCCCCHHHHHHHHHHH
Confidence 9999999999999999754
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=164.83 Aligned_cols=167 Identities=22% Similarity=0.191 Sum_probs=108.2
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc--
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF-- 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df-- 998 (1527)
.++.|+|+|++|+|||||+++|++... ..+...+.|++.....+.+++..+.++||||+...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~----------------~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp 241 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ----------------KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIP 241 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEETTEEEEEEECCCBCSSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc----------------cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCC
Confidence 456799999999999999999985411 12234577888888889999999999999997431
Q ss_pred ---hH---HHHHHHHhcCEEEEEEeCCCCC--C-hhHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHh
Q psy1758 999 ---GG---EVERILSMVDNVLLLIDAVEGP--M-PQTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFD 1066 (1527)
Q Consensus 999 ---~~---ev~~~l~~aD~ailVVDa~~G~--~-~qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~ 1066 (1527)
.. .+...+..+|.+++|+|++++. . .+...+...+.. .+.|+|+|.||+|+.+.......+.+.....
T Consensus 242 ~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~ 321 (364)
T 2qtf_A 242 PQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSK 321 (364)
T ss_dssp GGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHH
Confidence 11 1223467899999999998754 2 222222333333 4689999999999976542222222222112
Q ss_pred hhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCC
Q psy1758 1067 KLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDN 1117 (1527)
Q Consensus 1067 ~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~ 1117 (1527)
.+.. ...+++++||++|. |++.|++.|.+.++.|.+.
T Consensus 322 ~l~~----~~~~~~~~SA~~g~----------gi~~L~~~I~~~l~~~~~~ 358 (364)
T 2qtf_A 322 ELYS----PIFDVIPISALKRT----------NLELLRDKIYQLATQLSLE 358 (364)
T ss_dssp HHCS----CEEEEEECBTTTTB----------SHHHHHHHHHHHHHHHC--
T ss_pred HhcC----CCCcEEEEECCCCc----------CHHHHHHHHHHHhcccCCC
Confidence 2211 12357999999998 9999999999888766544
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.8e-14 Score=157.32 Aligned_cols=164 Identities=15% Similarity=0.100 Sum_probs=107.1
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
.....+|+++|.+|+|||||+++|+...-..... ...|.+. .....+....+.++||||||+.+|
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~--------------~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~ 88 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYV--------------PTVFENY-TACLETEEQRVELSLWDTSGSPYY 88 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCC--------------CCSEEEE-EEEEEC--CEEEEEEEEECCSGGG
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcC--------------CeeeeeE-EEEEEECCEEEEEEEEECCCCHhH
Confidence 3456799999999999999999998653211100 1112222 122233444578999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhH--HHHHHHHHHc--CCccEEEEeccCCCCCCh-----------hhhHHHHHH
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQT--RFVTRKALKL--GFKPIVVVNKIDRSNARP-----------EWVVDATFD 1063 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt--~~~~~~~~~~--glp~IvviNKiD~~~a~~-----------~~v~~~~~~ 1063 (1527)
......+++.+|++|+|+|+++...... ..++..+... ++|+++|.||+|+.+... ....++...
T Consensus 89 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 168 (214)
T 3q3j_B 89 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA 168 (214)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHH
Confidence 8888888999999999999987533222 2333444443 789999999999865210 001111222
Q ss_pred HHhhhcccccccCC-cEEEeccccCCcCCCcccccCC-ChhHHHHHHhhcCCC
Q psy1758 1064 LFDKLCATEEQLDF-PVIYTSALHGYANENSKARQGN-MIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1064 ~~~~l~~~~~~~~~-pvi~~SA~~g~~~~~~~~~~~g-i~~Ll~~i~~~lp~p 1114 (1527)
... ...+ +++.+||++|. | ++.+++.+.+.+..+
T Consensus 169 ~~~-------~~~~~~~~e~SA~~g~----------g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 169 IAK-------QLGAEIYLEGSAFTSE----------KSIHSIFRTASMLCLNK 204 (214)
T ss_dssp HHH-------HHTCSEEEECCTTTCH----------HHHHHHHHHHHHHHHC-
T ss_pred HHH-------HcCCCEEEEeccCCCc----------ccHHHHHHHHHHHHhcc
Confidence 111 1234 79999999998 8 999999998876443
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=162.41 Aligned_cols=160 Identities=13% Similarity=0.147 Sum_probs=109.4
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe-cCeEEEEEeCCCCCCc--
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHADF-- 998 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~iniiDTPGh~df-- 998 (1527)
..+|+++|.+|+|||||+++|+..... ......|.|+......+.+ +++.++||||||+.+|
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~---------------~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 67 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSA---------------FDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME 67 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCT---------------GGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC---------------ccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhh
Confidence 368999999999999999999865211 1123456777777777775 6789999999999988
Q ss_pred ---hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHH-HHHH-----cCCccEEEEeccCCCCCChhh-----hHHHHHHH
Q psy1758 999 ---GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTR-KALK-----LGFKPIVVVNKIDRSNARPEW-----VVDATFDL 1064 (1527)
Q Consensus 999 ---~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~-~~~~-----~glp~IvviNKiD~~~a~~~~-----v~~~~~~~ 1064 (1527)
.......++.+|++|+|+|+++....+....|. .+.. .++|+++|+||+|+...+... ..+++.+.
T Consensus 68 ~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~ 147 (307)
T 3r7w_A 68 NYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSET 147 (307)
T ss_dssp HHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHH
Confidence 455667788999999999999865444433332 2222 289999999999997632211 11222222
Q ss_pred HhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1065 FDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1065 ~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...++. ..+|++.+||+++ ++.+++..++..+
T Consensus 148 ~~~~g~----~~~~~~~tSa~~~-----------~i~e~~~~iv~~l 179 (307)
T 3r7w_A 148 SSEFGF----PNLIGFPTSIWDE-----------SLYKAWSQIVCSL 179 (307)
T ss_dssp HHTTTC----CSCEEEECCTTSS-----------HHHHHHHHHHHTT
T ss_pred HHHcCC----CCeEEEEeeecCC-----------hHHHHHHHHHHHH
Confidence 222211 0368999999994 6777777776654
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-14 Score=169.81 Aligned_cols=156 Identities=18% Similarity=0.228 Sum_probs=112.0
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC-eEEEEEeCCCCCC---
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGHAD--- 997 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-~~iniiDTPGh~d--- 997 (1527)
+.+|+++|.+|+|||||+++|+.....+. ...++|+.+....+.+.+ ..+.||||||+.+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~----------------~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~ 221 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIA----------------DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAH 221 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEES----------------STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTT
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccc----------------cCCccccCceEEEEEeCCCceEEEecCCCCccccc
Confidence 56899999999999999999976532221 223456666666777775 8999999999533
Q ss_pred ----chHHHHHHHHhcCEEEEEEeCCC----CCChhHHHHHHHHHH-----cCCccEEEEeccCCCCCChhhhHHHHHHH
Q psy1758 998 ----FGGEVERILSMVDNVLLLIDAVE----GPMPQTRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDL 1064 (1527)
Q Consensus 998 ----f~~ev~~~l~~aD~ailVVDa~~----G~~~qt~~~~~~~~~-----~glp~IvviNKiD~~~a~~~~v~~~~~~~ 1064 (1527)
+.....+.+..+|++|+|+|++. .+..+...++..+.. .++|+++|+||+|+... .+..+++.+.
T Consensus 222 ~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~e~~~~l~~~ 299 (342)
T 1lnz_A 222 QGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AENLEAFKEK 299 (342)
T ss_dssp CTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHHHHHHHHH
T ss_pred ccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--HHHHHHHHHH
Confidence 55666677788999999999975 222333444455554 37899999999999753 2223333332
Q ss_pred HhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1065 FDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1065 ~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
+ .. .++++++||+++. |+++|++.|.+.+..
T Consensus 300 l---~~-----~~~v~~iSA~tg~----------gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 300 L---TD-----DYPVFPISAVTRE----------GLRELLFEVANQLEN 330 (342)
T ss_dssp C---CS-----CCCBCCCSSCCSS----------TTHHHHHHHHHHHTS
T ss_pred h---hc-----CCCEEEEECCCCc----------CHHHHHHHHHHHHhh
Confidence 2 11 1578999999998 999999999988854
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=148.68 Aligned_cols=153 Identities=20% Similarity=0.161 Sum_probs=101.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
.+..+|+++|.+|+|||||+++|+...-... .. .. +... ...+.+++ +.++||||||+.+
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~-~~-------------~t-~~~~---~~~~~~~~~~~~l~i~Dt~G~~~ 79 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQE-ES-------------PE-GGRF---KKEIVVDGQSYLLLIRDEGGPPE 79 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCC-CC-------------TT-CEEE---EEEEEETTEEEEEEEEECSSSCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCC-cC-------------CC-cceE---EEEEEECCEEEEEEEEECCCChh
Confidence 4457899999999999999999986421100 00 00 1111 13344555 5678899999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCccEEEEeccCCCCCChhh-hHHHHHHHHhhhccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEW-VVDATFDLFDKLCAT 1071 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~----~glp~IvviNKiD~~~a~~~~-v~~~~~~~~~~l~~~ 1071 (1527)
|. +++.+|++++|+|+++....+. ..++..+.. .++|+++|.||+|+....... ..++.......++
T Consensus 80 ~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~-- 152 (184)
T 3ihw_A 80 LQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLK-- 152 (184)
T ss_dssp HH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTT--
T ss_pred hh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcC--
Confidence 87 7788999999999997543333 333344443 368999999999984321111 1222232222221
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.++++.+||++|. |++++++.+.+.+
T Consensus 153 ----~~~~~e~Sa~~~~----------gv~~lf~~l~~~i 178 (184)
T 3ihw_A 153 ----RCTYYETCATYGL----------NVERVFQDVAQKV 178 (184)
T ss_dssp ----TCEEEEEBTTTTB----------THHHHHHHHHHHH
T ss_pred ----CCeEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 2578999999998 9999999998764
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-13 Score=149.25 Aligned_cols=159 Identities=20% Similarity=0.214 Sum_probs=103.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+++|++|+|||||+++|+......... ...+.+. .....+....+.+.||||||+.+ .
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~--------------~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~ 89 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYD--------------PTLESTY-RHQATIDDEVVSMEILDTAGQED-T 89 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCC--------------TTCCEEE-EEEEEETTEEEEEEEEECCCCCC-C
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccC--------------CCCCceE-EEEEEECCEEEEEEEEECCCCCc-c
Confidence 455799999999999999999998652211100 1111111 11122222346799999999998 7
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
......++.+|++++|+|+++... .....++..+.. .++|+++|+||+|+...+.. ..++.......
T Consensus 90 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v-~~~~~~~~~~~------- 161 (196)
T 2atv_A 90 IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQV-STEEGEKLATE------- 161 (196)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCS-CHHHHHHHHHH-------
T ss_pred cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccccccc-CHHHHHHHHHH-------
Confidence 777888999999999999987321 122223333332 48899999999998653211 11222222111
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..+|++++||++|. .|++++++.|.+.+
T Consensus 162 ~~~~~~~~Sa~~g~---------~gi~~l~~~l~~~i 189 (196)
T 2atv_A 162 LACAFYECSACTGE---------GNITEIFYELCREV 189 (196)
T ss_dssp HTSEEEECCTTTCT---------TCHHHHHHHHHHHH
T ss_pred hCCeEEEECCCcCC---------cCHHHHHHHHHHHH
Confidence 24689999999985 17889999988765
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-13 Score=152.03 Aligned_cols=162 Identities=16% Similarity=0.075 Sum_probs=104.0
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df 998 (1527)
...+|+++|++|+|||||+++|+........... .+.+.. ..+.+++ +.+.||||||+.+|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t--------------~~~~~~---~~~~~~~~~~~l~i~Dt~G~~~~ 86 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT--------------VFENYI---ADIEVDGKQVELALWDTAGQEDY 86 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCS--------------SCCCCE---EEEEETTEEEEEEEECCCCSGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCc--------------ccceEE---EEEEECCEEEEEEEEECCCchhH
Confidence 4568999999999999999999865321110000 111111 1233333 58999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhH--HHHHHHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHHh------hh
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQT--RFVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFD------KL 1068 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt--~~~~~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~~------~l 1068 (1527)
......+++.+|++++|+|+++....+. ..++..+... ++|+++|+||+|+..... ..+.+..... +.
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~ 164 (201)
T 2gco_A 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH--TRRELAKMKQEPVRSEEG 164 (201)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHH--HHHHHHTTTCCCCCHHHH
T ss_pred HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCcc--chhhhcccccCcCCHHHH
Confidence 8888888899999999999987322221 2333444444 899999999999976421 1111110000 00
Q ss_pred cccccccCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1069 CATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1069 ~~~~~~~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
........+ +++++||++|. |++++++.|.+.+
T Consensus 165 ~~~~~~~~~~~~~~~SA~~g~----------gi~~l~~~i~~~~ 198 (201)
T 2gco_A 165 RDMANRISAFGYLECSAKTKE----------GVREVFEMATRAG 198 (201)
T ss_dssp HHHHHHTTCSEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred HHHHHhCCCcEEEEeeCCCCC----------CHHHHHHHHHHHH
Confidence 000011233 78999999998 9999999987754
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=145.49 Aligned_cols=151 Identities=17% Similarity=0.162 Sum_probs=97.4
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCch
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~ 999 (1527)
..+|+++|.+|+|||||+++|+...-. .. ....|.+. ...+.+++ ..++||||||+.+
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~--~~-------------~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~-- 66 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQ--VL-------------EKTESEQY---KKEMLVDGQTHLVLIREEAGAPD-- 66 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCC--CC-------------SSCSSSEE---EEEEEETTEEEEEEEEECSSSCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC--Cc-------------CCCcceeE---EEEEEECCEEEEEEEEECCCCch--
Confidence 468999999999999999999865211 10 01112111 12233333 5789999999987
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHH------cCCccEEEEeccCCCCCChh-hhHHHHHHHHhhhccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKALK------LGFKPIVVVNKIDRSNARPE-WVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~------~glp~IvviNKiD~~~a~~~-~v~~~~~~~~~~l~~~ 1071 (1527)
..+++.+|++|+|+|+++....+....| ..+.. .++|+++|.||+|+...... -..++.........
T Consensus 67 ---~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~-- 141 (178)
T 2iwr_A 67 ---AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMK-- 141 (178)
T ss_dssp ---HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHS--
T ss_pred ---hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhc--
Confidence 4577889999999999874322222222 12222 37899999999998421111 11222222222111
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+|++.+||++|. |++++++.+.+.+
T Consensus 142 ----~~~~~~~Sa~~~~----------~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 142 ----RCSYYETXATYGL----------NVDRVFQEVAQKV 167 (178)
T ss_dssp ----SEEEEEEBTTTTB----------THHHHHHHHHHHH
T ss_pred ----CCeEEEEeccccC----------CHHHHHHHHHHHH
Confidence 3579999999998 9999999998765
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-13 Score=150.74 Aligned_cols=161 Identities=23% Similarity=0.270 Sum_probs=105.7
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
+..+|+++|..++|||||+++++... +.. .....-|.....+...+....++++||||||+.+|..
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~--f~~------------~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~ 77 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDS--FDN------------TYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS 77 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSC--CC----------------------CEEEEEECSSCEEEEEEECCSCTTTCGG
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCC--CCC------------CcCCccceEEEEEEEEecceEEEEEEEECCCchhhhh
Confidence 34589999999999999999998542 110 0011122222222222333346889999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
....+++.+|++++|+|.+.... ......|..+.. .++|+++|.||+|+.+.+.- ..++......+ ..
T Consensus 78 l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V-~~~e~~~~a~~-------~~ 149 (216)
T 4dkx_A 78 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQV-SIEEGERKAKE-------LN 149 (216)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCS-CHHHHHHHHHH-------HT
T ss_pred HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcc-cHHHHhhHHHH-------hC
Confidence 99999999999999999986322 222334444433 46889999999998654311 11222222111 24
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
++++.+||++|. |++++|+.|++.++.
T Consensus 150 ~~~~e~SAktg~----------nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 150 VMFIETSAKAGY----------NVKQLFRRVAAALPG 176 (216)
T ss_dssp CEEEEEBTTTTB----------SHHHHHHHHHHHC--
T ss_pred CeeEEEeCCCCc----------CHHHHHHHHHHHHHh
Confidence 578999999998 999999999988864
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.2e-15 Score=161.00 Aligned_cols=164 Identities=15% Similarity=0.110 Sum_probs=103.9
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
.+..+|+++|++|+|||||+++|+...-.-...+ +. +.+. .....+....+.++||||||+.+|.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~----t~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 92 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP----TV----------FDNY-SANVMVDGKPVNLGLWDTAGQEDYD 92 (204)
Confidence 3456899999999999999999975421100000 00 0000 1111222334677899999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHH------Hhhhc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDL------FDKLC 1069 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~--~~~~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~------~~~l~ 1069 (1527)
.....+++.+|++++|+|++++...+.. .++..+... ++|+++|+||+|+...+. ..+.+.+. .....
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~ 170 (204)
T 3th5_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD--TIEKLKEKKLTPITYPQGL 170 (204)
Confidence 9888899999999999999876433332 233333333 789999999999965421 11111000 00011
Q ss_pred ccccccCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1070 ATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1070 ~~~~~~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
.......+ |++++||++|. |++++++.|.+.
T Consensus 171 ~~~~~~~~~~~~~vSA~~g~----------gi~~l~~~l~~~ 202 (204)
T 3th5_A 171 AMAKEIGAVKYLECSALTQR----------GLKTVFDEAIRA 202 (204)
Confidence 11122334 78999999998 999999988754
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-13 Score=148.06 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=100.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+++|.+|+|||||+++|+...-..... ...|.+. .....+....+.+.||||||+.+|.
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~--------------~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 83 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYD--------------PNLEDTY-SSEETVDHQPVHLRVMDTADLDTPR 83 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCC--------------TTCCEEE-EEEEEETTEEEEEEEEECCC---CC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccC--------------CCcccee-eEEEEECCEEEEEEEEECCCCCcch
Confidence 345789999999999999999998653110000 1112222 1112233344688999999999887
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
. +.++++.+|++++|+|+++....+ ...++..+.. .++|+++|+||+|+.+.+.. ..++.......
T Consensus 84 ~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~~----- 156 (187)
T 3c5c_A 84 N-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQV-TKAEGVALAGR----- 156 (187)
T ss_dssp C-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSS-CHHHHHHHHHH-----
T ss_pred h-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCcc-CHHHHHHHHHH-----
Confidence 6 467889999999999998632222 2223333333 48999999999998643211 11222222222
Q ss_pred cccCCcEEEecc-ccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1073 EQLDFPVIYTSA-LHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1073 ~~~~~pvi~~SA-~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..++++.+|| ++|. |++++++.+.+.+
T Consensus 157 --~~~~~~e~Sa~~~g~----------gv~~lf~~l~~~i 184 (187)
T 3c5c_A 157 --FGCLFFEVSACLDFE----------HVQHVFHEAVREA 184 (187)
T ss_dssp --HTCEEEECCSSSCSH----------HHHHHHHHHHHHH
T ss_pred --cCCcEEEEeecCccc----------cHHHHHHHHHHHH
Confidence 2357999999 8998 9999999998765
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.4e-14 Score=151.19 Aligned_cols=161 Identities=14% Similarity=0.072 Sum_probs=101.8
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+++|++|+|||||+++|+......... ...+.+. .....+....+.+.||||||+.+|.
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~--------------~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~ 69 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYV--------------PTVFENY-TASFEIDTQRIELSLWDTSGSPYYD 69 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC--------------CCSEEEE-EEEEECSSCEEEEEEEEECCSGGGT
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCC--------------CccceeE-EEEEEECCEEEEEEEEECCCChhhh
Confidence 345789999999999999999998652110000 0011111 1111222234689999999999998
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHH-HHH-HHHHH--cCCccEEEEeccCCCCCChh-----------hhHHHHHHH
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTR-FVT-RKALK--LGFKPIVVVNKIDRSNARPE-----------WVVDATFDL 1064 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~-~~~-~~~~~--~glp~IvviNKiD~~~a~~~-----------~v~~~~~~~ 1064 (1527)
.....+++.+|++|+|+|+++....+.. ..| ..+.. .+.|+++|.||+|+.+.... -..++....
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 149 (184)
T 1m7b_A 70 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 149 (184)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHH
Confidence 8777788999999999999874322221 223 33333 37899999999998642100 001112221
Q ss_pred HhhhcccccccCCcEEEeccc-cCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1065 FDKLCATEEQLDFPVIYTSAL-HGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1065 ~~~l~~~~~~~~~pvi~~SA~-~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...++ ..|++.+||+ +|. |++++++.+.+.+
T Consensus 150 ~~~~~------~~~~~e~Sa~~~~~----------gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 150 AKQIG------AATYIECSALQSEN----------SVRDIFHVATLAC 181 (184)
T ss_dssp HHHHT------CSEEEECBTTTBHH----------HHHHHHHHHHHHH
T ss_pred HHHcC------CcEEEEeeecCCCc----------CHHHHHHHHHHHH
Confidence 11111 2479999999 677 8999999987754
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-13 Score=158.22 Aligned_cols=159 Identities=20% Similarity=0.223 Sum_probs=102.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccc------cCCceeEEEE---------------------------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFS------EAGGITQHIG--------------------------------- 107 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~------~~~giT~~~~--------------------------------- 107 (1527)
...|+|+|+|++|+|||||+|+|.+..+... ..++.++...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 4568999999999999999999998875211 1221111111
Q ss_pred --------------------EEE-EEeCCeEEEEEeCCChhh-------------HHHHHHhhccccCEEEEEEeC-CCC
Q psy1758 108 --------------------AYN-VVTNHGSITFLDTPGHEA-------------FTAMRARGAKVTDIVVLVVAA-DDG 152 (1527)
Q Consensus 108 --------------------~~~-~~~~~~~i~~iDTPG~e~-------------f~~~~~~~~~~aD~~IlVvda-~~g 152 (1527)
... ....+..++||||||+.. +..+...++..+|++++|+|+ +.+
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 000 112345799999999643 667777889999999999997 445
Q ss_pred CcHHH-HHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccccccc-CCCCcEEEeeccC---CCChhHHHHHHH
Q psy1758 153 VMPQT-REAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEY-GGASPFISISAKT---GVGINKLLENIS 227 (1527)
Q Consensus 153 ~~~qt-~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~-~~~~~v~~iSAkt---g~gI~eL~~~l~ 227 (1527)
...+. ...+..+...+.|+++|+||+|+...... ....+. .... .+ .+..+++.+||.+ +.|+.++++.+.
T Consensus 182 ~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~-~~~~~~-~~~~--~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~ 257 (315)
T 1jwy_B 182 LANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTD-AMEVLT-GRVI--PLTLGFIGVINRSQEDIIAKKSIRESLKSEI 257 (315)
T ss_dssp STTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCC-CHHHHT-TSSS--CCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred hhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchH-HHHHHh-CCCc--cCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence 54333 46666777778999999999999764321 122221 1111 11 1223455556666 789999999886
Q ss_pred HH
Q psy1758 228 LQ 229 (1527)
Q Consensus 228 ~~ 229 (1527)
..
T Consensus 258 ~~ 259 (315)
T 1jwy_B 258 LY 259 (315)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-13 Score=150.98 Aligned_cols=158 Identities=15% Similarity=0.073 Sum_probs=101.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe--cCeEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY--NGTRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~--~~~~iniiDTPGh~df 998 (1527)
...+|+++|.+|+|||||+++|+......... ...+.+. ...+.+ ..+.+.||||||+.+|
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~--------------~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~ 89 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYV--------------PTVFENY---TASFEIDTQRIELSLWDTSGSPYY 89 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC--------------CCSEEEE---EEEEESSSSEEEEEEEEECCSGGG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC--------------CccceeE---EEEEEECCEEEEEEEEeCCCcHhh
Confidence 45789999999999999999998652210000 0111111 112233 3468999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHH-HHH-HHHHH--cCCccEEEEeccCCCCCChh----------h-hHHHHHH
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTR-FVT-RKALK--LGFKPIVVVNKIDRSNARPE----------W-VVDATFD 1063 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~-~~~-~~~~~--~glp~IvviNKiD~~~a~~~----------~-v~~~~~~ 1063 (1527)
......+++.+|++|+|+|+++....+.. ..| ..+.. .+.|+++|.||+|+...... . ..++...
T Consensus 90 ~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 169 (205)
T 1gwn_A 90 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 169 (205)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred hHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHH
Confidence 88777788999999999999874222221 222 33333 37899999999998642100 0 0111222
Q ss_pred HHhhhcccccccCCcEEEeccc-cCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1064 LFDKLCATEEQLDFPVIYTSAL-HGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1064 ~~~~l~~~~~~~~~pvi~~SA~-~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
....++ .++++++||+ +|. |++++++.+.+.+
T Consensus 170 ~~~~~~------~~~~~e~SAk~~~~----------gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 170 MAKQIG------AATYIECSALQSEN----------SVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHT------CSEEEECCTTTCHH----------HHHHHHHHHHHHH
T ss_pred HHHHcC------CCEEEEeeeccCCc----------CHHHHHHHHHHHH
Confidence 111111 2478999999 677 8999999987653
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.8e-13 Score=161.13 Aligned_cols=199 Identities=18% Similarity=0.222 Sum_probs=98.8
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCe--EEEEEeCCCCCCch
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT--RINIIDTPGHADFG 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~--~iniiDTPGh~df~ 999 (1527)
..+|+++|++|+|||||+++|+.. +.+.. ..++....+..+++++......+.+.+. .+++|||||+.|+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~-~~~~~------~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~ 109 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLT-DLYPE------RVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAI 109 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTC-CC---------------------CEEEEEEEEC----CEEEEEEEEC--------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCC-CCCCC------CcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccC
Confidence 358999999999999999999754 11111 1111122223344555444444555554 78999999995543
Q ss_pred H-------HHH-------HHHHhc-------------CEEEEEEeC-CCCCChhHHHHHHHHHHcCCccEEEEeccCCCC
Q psy1758 1000 G-------EVE-------RILSMV-------------DNVLLLIDA-VEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSN 1051 (1527)
Q Consensus 1000 ~-------ev~-------~~l~~a-------------D~ailVVDa-~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~ 1051 (1527)
. .+. .+++.+ |+++++|++ .++..+....++..+ ..++|+|+|+||+|+..
T Consensus 110 ~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 110 NCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKADTLT 188 (361)
T ss_dssp ------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECCSSSC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEECCCCCC
Confidence 3 222 444443 468888887 445544444444433 46799999999999875
Q ss_pred CChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeec
Q psy1758 1052 ARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEY 1131 (1527)
Q Consensus 1052 a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~ 1131 (1527)
.+ ++ ..+.+.... .....++|++++||++|.. ...+..+++.|.+.+|.+....+.++.+
T Consensus 189 ~~--ev-~~~k~~i~~---~~~~~~i~~~~~Sa~~~~~-------~e~~~~l~~~i~~~ip~~vv~s~~~~~~------- 248 (361)
T 2qag_A 189 LK--ER-ERLKKRILD---EIEEHNIKIYHLPDAESDE-------DEDFKEQTRLLKASIPFSVVGSNQLIEA------- 248 (361)
T ss_dssp HH--HH-HHHHHHHHH---HTTCC-CCSCCCC----------------CHHHHHHHHHTCSCEECCCSEEC---------
T ss_pred HH--HH-HHHHHHHHH---HHHHCCCCEEeCCCcCCCc-------chhHHHHHHHHHhcCCCCEeCCCCcccc-------
Confidence 32 22 221111111 1223457899999999972 1256788888988888765544443321
Q ss_pred cccCceEEEEEeec-CccccC
Q psy1758 1132 SSYLGKIGIGRILS-GRIKSL 1151 (1527)
Q Consensus 1132 d~~~G~v~~grV~s-G~lk~G 1151 (1527)
.|+.+.||.|. |.+.+-
T Consensus 249 ---~g~~~~gr~ypwg~~~ve 266 (361)
T 2qag_A 249 ---KGKKVRGRLYPWGVVEVE 266 (361)
T ss_dssp -------CEEECCSSCCEESS
T ss_pred ---CCeEEEEEecCCceEecC
Confidence 47777788775 665543
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.9e-13 Score=158.19 Aligned_cols=119 Identities=10% Similarity=0.086 Sum_probs=78.2
Q ss_pred cCeEEEEEeCCCCCC-------------chHHHHHHHHhcCEEEEEEeC-CCCCChhH-HHHHHHHHHcCCccEEEEecc
Q psy1758 983 NGTRINIIDTPGHAD-------------FGGEVERILSMVDNVLLLIDA-VEGPMPQT-RFVTRKALKLGFKPIVVVNKI 1047 (1527)
Q Consensus 983 ~~~~iniiDTPGh~d-------------f~~ev~~~l~~aD~ailVVDa-~~G~~~qt-~~~~~~~~~~glp~IvviNKi 1047 (1527)
.+..++||||||+.+ |...+..++..+|++++|+|+ ..+...+. ..++..+...+.|.++|+||+
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCc
Confidence 457899999999864 556677789999999999997 55655444 367777777899999999999
Q ss_pred CCCCCChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1048 DRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1048 D~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
|+...+. ...+.+.. .......+++++|+.++.... ...|+.++++.+.+++|.
T Consensus 209 Dl~~~~~-~~~~~~~~-------~~~~~~~~~~~v~~~sa~~~~----~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 209 DLMDKGT-DAMEVLTG-------RVIPLTLGFIGVINRSQEDII----AKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TSSCSSC-CCHHHHTT-------SSSCCTTCEEECCCCCHHHHS----SSCCHHHHHHHHHHHHHT
T ss_pred ccCCcch-HHHHHHhC-------CCccCCCCeEEEecCChhhhc----cCCCHHHHHHHHHHHHhC
Confidence 9975432 12222221 001112334455554432100 012889999999998875
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-12 Score=165.84 Aligned_cols=164 Identities=16% Similarity=0.179 Sum_probs=110.1
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCce--------------eEEE------------------------
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGI--------------TQHI------------------------ 106 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~gi--------------T~~~------------------------ 106 (1527)
..++++|+|+|++|+|||||+|+|.+..+ ..+..+++ |++.
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 45678999999999999999999998875 44444444 3322
Q ss_pred ---------------EEEEEEeCC----eEEEEEeCCChhh---HHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHH-H
Q psy1758 107 ---------------GAYNVVTNH----GSITFLDTPGHEA---FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIA-H 163 (1527)
Q Consensus 107 ---------------~~~~~~~~~----~~i~~iDTPG~e~---f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~-~ 163 (1527)
....+.++. ..++||||||... .......++..+|++|+|+|++++......+.|. .
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 001111111 3589999999765 3455667788999999999999988777776664 4
Q ss_pred HHHcCCCEEEEEEcccCCcch---hH----------HHHHHHhhhcccccc---c-CCCCcEEEeecc------------
Q psy1758 164 AKISGVPLIVAINKIDKLDIN---LD----------RIKQDLISEQVIPEE---Y-GGASPFISISAK------------ 214 (1527)
Q Consensus 164 ~~~~~vpiIvviNKiDl~~~~---~~----------~~~~~l~~~~~~~~~---~-~~~~~v~~iSAk------------ 214 (1527)
+...+.|+++|+||+|+.... .+ .+...+......... + ....+++++||+
T Consensus 226 l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~ 305 (695)
T 2j69_A 226 IKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQA 305 (695)
T ss_dssp TTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTC
T ss_pred HHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchh
Confidence 455688999999999986532 11 011111110000000 0 112479999999
Q ss_pred --CCCChhHHHHHHHHH
Q psy1758 215 --TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 --tg~gI~eL~~~l~~~ 229 (1527)
+|.|+++|++.|...
T Consensus 306 ~~~~~Gi~~L~~~L~~~ 322 (695)
T 2j69_A 306 DLDGTGFPKFMDSLNTF 322 (695)
T ss_dssp CCTTSSHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHH
Confidence 999999999998643
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.38 E-value=8.6e-13 Score=157.89 Aligned_cols=160 Identities=18% Similarity=0.250 Sum_probs=105.6
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc------cccCCceeEEEE---------------------------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV------FSEAGGITQHIG--------------------------------- 107 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~------~~~~~giT~~~~--------------------------------- 107 (1527)
...|+|+++|++|+|||||+|+|.+..+. .+..|+.++...
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999987763 223344222111
Q ss_pred ------------EEEEEeC-CeEEEEEeCCCh-------------hhHHHHHHhhcccc-CEEEEEEeCCCCCcHHHH-H
Q psy1758 108 ------------AYNVVTN-HGSITFLDTPGH-------------EAFTAMRARGAKVT-DIVVLVVAADDGVMPQTR-E 159 (1527)
Q Consensus 108 ------------~~~~~~~-~~~i~~iDTPG~-------------e~f~~~~~~~~~~a-D~~IlVvda~~g~~~qt~-e 159 (1527)
...+... ...++||||||. +.+..+...++..+ +++++|+|++.+...+.. .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 0111122 457999999994 25677777777655 455667777776655443 4
Q ss_pred HHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 160 AIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 160 ~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
.+..+...+.|+++|+||+|+.+.... ....+ ........ .+..+++++||++|.|++++++.+...
T Consensus 189 i~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~-~~~~~~l~-~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 189 VAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVL-ENKLLPLR-RGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp HHHHHCTTCTTEEEEEECGGGSCTTCC-CHHHH-TTCSSCCT-TCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred HHHHhCcCCCceEEEeccccccCcchh-HHHHH-hCCccccc-CCceEEEeCCcccccccccHHHHHHHH
Confidence 666666678999999999999753221 11111 11111111 123578899999999999999999753
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.4e-13 Score=151.32 Aligned_cols=116 Identities=19% Similarity=0.176 Sum_probs=84.9
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
+..+|+++|++|+|||||+++|++..... .....++|.......+.+++..++||||||+.+|..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~ 99 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVR---------------VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGY 99 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSC---------------CCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcc---------------cCCCCCcceeeEEEEEEECCeeEEEEECCCCCCccc
Confidence 35789999999999999999999753211 122356677777888899999999999999998865
Q ss_pred HHHHHHH---------hcCEEEEEEeCCCC-CChhHHHHHHHHHHc-C----CccEEEEeccCCCC
Q psy1758 1001 EVERILS---------MVDNVLLLIDAVEG-PMPQTRFVTRKALKL-G----FKPIVVVNKIDRSN 1051 (1527)
Q Consensus 1001 ev~~~l~---------~aD~ailVVDa~~G-~~~qt~~~~~~~~~~-g----lp~IvviNKiD~~~ 1051 (1527)
....+++ .+|++++|+|.... .......++..+.+. + .|+++|+||+|+..
T Consensus 100 ~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 100 VNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp ECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred chHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 4444332 78999999887653 334444555555543 3 38899999999853
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=8.9e-13 Score=153.74 Aligned_cols=175 Identities=15% Similarity=0.187 Sum_probs=107.7
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCc------cccccc-cc----------------ceecchhh----hh----c--
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGT------FRKNQN-IN----------------ARIMDSNE----IE----K-- 967 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~------~~~~~~-~~----------------~~~~D~~~----~E----~-- 967 (1527)
...+|+++|.+|+|||||+++|++.... ...... +. ..+.+... .+ +
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 3468999999999999999999976421 111110 00 00011110 10 0
Q ss_pred --ccceeEeeeeEEEEec-CeEEEEEeCCCCCC-------------chHHHHHHHHhcCEEE-EEEeCCCCCChhHH-HH
Q psy1758 968 --ERGITIFSKNCSIEYN-GTRINIIDTPGHAD-------------FGGEVERILSMVDNVL-LLIDAVEGPMPQTR-FV 1029 (1527)
Q Consensus 968 --erGiTi~~~~~~~~~~-~~~iniiDTPGh~d-------------f~~ev~~~l~~aD~ai-lVVDa~~G~~~qt~-~~ 1029 (1527)
..|++.......+... ...++||||||+.+ +...+..+++.+|.++ +|+|++.+...+.. .+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 1333332222223332 47899999999742 4455667788888777 69999988777764 45
Q ss_pred HHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC-CcEEEeccccCCcCCCcccccCCChhHHHHHH
Q psy1758 1030 TRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYANENSKARQGNMIPLFEAIL 1108 (1527)
Q Consensus 1030 ~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~-~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~ 1108 (1527)
++.+...+.|.++|+||+|+.+.+.. ..+.+.. .+. ..... .|++++||++|. |++.|++.+.
T Consensus 185 ~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~---~~~--~~~~~~~~v~~~SA~~~~----------gi~~l~~~l~ 248 (299)
T 2aka_B 185 AKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLEN---KLL--PLRRGYIGVVNRSQKDID----------GKKDITAALA 248 (299)
T ss_dssp HHHHCTTCSSEEEEEECGGGSCTTCC-CHHHHTT---CSS--CCTTCEEECCCCCCBCTT----------SCBCHHHHHH
T ss_pred HHHhCCCCCeEEEEEEccccCCCCch-HHHHHhC---CcC--cCCCCcEEEECCChhhcc----------ccccHHHHHH
Confidence 66666678999999999999754321 1121111 010 00112 378899999998 8889999887
Q ss_pred hhc
Q psy1758 1109 KYV 1111 (1527)
Q Consensus 1109 ~~l 1111 (1527)
+..
T Consensus 249 ~~~ 251 (299)
T 2aka_B 249 AER 251 (299)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=7.9e-13 Score=151.56 Aligned_cols=116 Identities=14% Similarity=0.097 Sum_probs=86.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHH-------Hhhc-
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMR-------ARGA- 137 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~-------~~~~- 137 (1527)
.+.++|+++|++|+|||||+++|.+..+ .....+++|.......+.+++..++||||||+++|.... .+.+
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 3568999999999999999999998875 456667788888888888999999999999987663222 2222
Q ss_pred -cccCEEEEEEeCCC-CCcHHHHHHHHHHHH---c--CCCEEEEEEcccCCc
Q psy1758 138 -KVTDIVVLVVAADD-GVMPQTREAIAHAKI---S--GVPLIVAINKIDKLD 182 (1527)
Q Consensus 138 -~~aD~~IlVvda~~-g~~~qt~e~i~~~~~---~--~vpiIvviNKiDl~~ 182 (1527)
..+|++++|+|++. .........+..+.. . ..|+++|+||+|+..
T Consensus 114 ~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 37899999999876 333333344444332 2 248999999999853
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-12 Score=156.01 Aligned_cols=156 Identities=21% Similarity=0.163 Sum_probs=106.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
...+|+++|++|+|||||+++|+...... ....+.|.......+.+++..+.+|||||+.++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 229 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEI----------------ASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPI 229 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEE----------------ECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcc----------------CCCCCeeeceeEEEEEecCceEEEEeCCCccccch
Confidence 44689999999999999999997652111 11234555555566777889999999999876531
Q ss_pred --------HHHHH-HHhcCEEEEEEeCCCCC--ChhH-HHHHHHHHH-c-CCccEEEEeccCCCCCChhhhHHHHHHHHh
Q psy1758 1001 --------EVERI-LSMVDNVLLLIDAVEGP--MPQT-RFVTRKALK-L-GFKPIVVVNKIDRSNARPEWVVDATFDLFD 1066 (1527)
Q Consensus 1001 --------ev~~~-l~~aD~ailVVDa~~G~--~~qt-~~~~~~~~~-~-glp~IvviNKiD~~~a~~~~v~~~~~~~~~ 1066 (1527)
....+ ...+|++++|+|++.+. ..+. ..++..+.. . +.|+++|+||+|+.... . +++....+.
T Consensus 230 ~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~--~-~~~~~~~~~ 306 (357)
T 2e87_A 230 SERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEE--N-IKRLEKFVK 306 (357)
T ss_dssp TTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHH--H-HHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChH--H-HHHHHHHHH
Confidence 11112 24689999999987643 2222 333444333 3 89999999999986532 1 233332221
Q ss_pred hhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1067 KLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1067 ~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...+|++++||++|. |+++|++++.+.+.
T Consensus 307 -------~~~~~~~~iSA~~g~----------gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 307 -------EKGLNPIKISALKGT----------GIDLVKEEIIKTLR 335 (357)
T ss_dssp -------HTTCCCEECBTTTTB----------THHHHHHHHHHHHH
T ss_pred -------hcCCCeEEEeCCCCc----------CHHHHHHHHHHHHH
Confidence 124689999999998 99999999988764
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.1e-13 Score=149.21 Aligned_cols=169 Identities=17% Similarity=0.136 Sum_probs=97.9
Q ss_pred ccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCC
Q psy1758 917 ENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA 996 (1527)
Q Consensus 917 ~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~ 996 (1527)
.+....++|+++|++|+|||||+++|++...... .....++|.......+.+++..++||||||+.
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~ 89 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHS--------------GTAAKSITKKCEKRSSSWKETELVVVDTPGIF 89 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC---------------------CCSCEEEEEEETTEEEEEEECCSCC
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCcc--------------CCCCCceeeeEEEEEEEeCCceEEEEECCCcc
Confidence 3445678999999999999999999986522111 11223677777778888999999999999987
Q ss_pred Cch-------HHHHHHH----HhcCEEEEEEeCCCCCChhHHHHHHHHH-----HcCCccEEEEeccCCCCCC-hhhhHH
Q psy1758 997 DFG-------GEVERIL----SMVDNVLLLIDAVEGPMPQTRFVTRKAL-----KLGFKPIVVVNKIDRSNAR-PEWVVD 1059 (1527)
Q Consensus 997 df~-------~ev~~~l----~~aD~ailVVDa~~G~~~qt~~~~~~~~-----~~glp~IvviNKiD~~~a~-~~~v~~ 1059 (1527)
+.. .++.+.+ +.+|++|+|+|++.. .......+..+. ....|+++|+||+|+...+ .++.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~ 168 (239)
T 3lxx_A 90 DTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRY-TEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLR 168 (239)
T ss_dssp -----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCC-SSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC----------
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCC-CHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHH
Confidence 642 3344443 346999999999753 333333333332 2346899999999986542 222221
Q ss_pred ----HHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1060 ----ATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1060 ----~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.++++....+ ..+++.++..+.+ ....++.+|++.+.+.+.
T Consensus 169 ~~~~~l~~l~~~~~-------~~~~~~~~~~~~~-----~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 169 EAPEDIQDLMDIFG-------DRYCALNNKATGA-----EQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp --CHHHHHHHHHHS-------SSEEECCTTCCHH-----HHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHcC-------CEEEEEECCCCcc-----ccHHHHHHHHHHHHHHHH
Confidence 2333332222 2355555543310 001277889988877663
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.5e-13 Score=156.48 Aligned_cols=164 Identities=15% Similarity=0.117 Sum_probs=105.6
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCch
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFG 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~ 999 (1527)
..+|+++|.+|+|||||+++|+...-.-. ..+++.......+..++ +.++||||||+.+|.
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 217 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGE-----------------YIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD 217 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCS-----------------CCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcc-----------------cCCcccceeEEEEEECCEEEEEEEEeCCCchhhh
Confidence 46899999999999999999986421111 01112222223344444 456699999999998
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHH------hhhc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLF------DKLC 1069 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~--~~~~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~------~~l~ 1069 (1527)
.....+++.+|++++|+|++++...+.. .++..+... ++|+++|+||+|+..... ..+.+.+.. ....
T Consensus 218 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~ 295 (332)
T 2wkq_A 218 RLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD--TIEKLKEKKLTPITYPQGL 295 (332)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHH--HHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccc--hhhhccccccccccHHHHH
Confidence 8888889999999999999875333322 222344443 899999999999865321 111111100 0000
Q ss_pred ccccccCC-cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1070 ATEEQLDF-PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1070 ~~~~~~~~-pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.......+ |++++||++|. |++++++.+.+.+..|
T Consensus 296 ~~~~~~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 296 AMAKEIGAVKYLECSALTQR----------GLKTVFDEAIRAVLCP 331 (332)
T ss_dssp HHHHHTTCSEEEECCTTTCT----------THHHHHHHHHHHHHC-
T ss_pred HHHHHcCCcEEEEecCCCCc----------CHHHHHHHHHHHHhcC
Confidence 00011233 79999999998 9999999998877544
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.3e-13 Score=144.24 Aligned_cols=110 Identities=23% Similarity=0.299 Sum_probs=74.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccccc---ccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccc----
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVF---SEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKV---- 139 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~---~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~---- 139 (1527)
.+.++|+++|++|+|||||+++|.+..+.. +..++++.+ +.+..+.||||||++.|...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 118 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 118 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C-------CCCTTCSEEEETTCCBSSCCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-------ecCCeEEEEECCCCchHHHHHHHHHHhhccc
Confidence 567899999999999999999999877533 233333332 255689999999998886666666554
Q ss_pred cCEEEEEEeCC-CCCc-HHHHHHHHHH---H----HcCCCEEEEEEcccCCcc
Q psy1758 140 TDIVVLVVAAD-DGVM-PQTREAIAHA---K----ISGVPLIVAINKIDKLDI 183 (1527)
Q Consensus 140 aD~~IlVvda~-~g~~-~qt~e~i~~~---~----~~~vpiIvviNKiDl~~~ 183 (1527)
+|++++|+|++ +... .....++..+ . ..++|+++|+||+|+.+.
T Consensus 119 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 119 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp EEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred CCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 89999999998 4211 1111222211 1 148999999999999763
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.4e-12 Score=140.45 Aligned_cols=163 Identities=15% Similarity=0.144 Sum_probs=105.1
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
.....+|+++|++|+|||||+++|++.... .......|.|.... .+.+++ .+.++||||+.++
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~--------------~~~~~~~G~~~~~~--~~~~~~-~~~l~Dt~G~~~~ 85 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSL--------------ARTSKTPGRTQLIN--LFEVAD-GKRLVDLPGYGYA 85 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC---------------------------CCEE--EEEEET-TEEEEECCCCC--
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCcc--------------ccccCCCccceeeE--EEEecC-CEEEEECcCCccc
Confidence 345568999999999999999999754210 01122345555432 334444 6889999998642
Q ss_pred ----------hHHHHHHH---HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhh-hHHHHHHH
Q psy1758 999 ----------GGEVERIL---SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEW-VVDATFDL 1064 (1527)
Q Consensus 999 ----------~~ev~~~l---~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~-v~~~~~~~ 1064 (1527)
...+..++ ..+|++++++|+..+.......+...+...++|.+++.||+|+....... .++.+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~ 165 (210)
T 1pui_A 86 EVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREA 165 (210)
T ss_dssp ----CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHH
Confidence 22233333 46899999999998876666666667777899999999999986532111 13344433
Q ss_pred HhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1065 FDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1065 ~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
+.+. ...++++++||+++. |++.+++.|.+.++.
T Consensus 166 ~~~~-----~~~~~~~~~Sal~~~----------~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 166 VLAF-----NGDVQVETFSSLKKQ----------GVDKLRQKLDTWFSE 199 (210)
T ss_dssp HGGG-----CSCEEEEECBTTTTB----------SHHHHHHHHHHHHC-
T ss_pred HHhc-----CCCCceEEEeecCCC----------CHHHHHHHHHHHHhh
Confidence 3221 123568899999998 999999999887653
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=8.6e-13 Score=142.48 Aligned_cols=164 Identities=17% Similarity=0.180 Sum_probs=99.6
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEE---EecCeEEEEEeCCCCCCch
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSI---EYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~---~~~~~~iniiDTPGh~df~ 999 (1527)
.+|+++|.+|+|||||+++|+.....+.. ......|+........+ ......+.+|||||+.+|.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~------------~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 70 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLG------------MQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFY 70 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------------------CSEEEEEEEC---------CEEEEEEECSHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCC------------CcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHH
Confidence 47999999999999999999864211110 00111222222211111 1145789999999998887
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCC--ChhHHHHHHHHHH--cCCccEEEEeccCCCCCChh-hhHHHHHHHHhhhcccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGP--MPQTRFVTRKALK--LGFKPIVVVNKIDRSNARPE-WVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~--~~qt~~~~~~~~~--~glp~IvviNKiD~~~a~~~-~v~~~~~~~~~~l~~~~~~ 1074 (1527)
.....+++.+|++++|+|.+++. .......+..+.. .+.|+++|.||+|+...+.. ....+.... +. ..
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~---~~ 144 (184)
T 2zej_A 71 STHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKE---LL---NK 144 (184)
T ss_dssp TTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHH---TT---TC
T ss_pred HhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHH---HH---Hh
Confidence 77777889999999999998752 1122233333333 37888999999999653211 011111111 11 12
Q ss_pred cCCc----EEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1075 LDFP----VIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1075 ~~~p----vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
..+| ++++||++|. .+++.|++.|.+.++.
T Consensus 145 ~~~~~~~~~~~~Sa~~~~---------~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 145 RGFPAIRDYHFVNATEES---------DALAKLRKTIINESLN 178 (184)
T ss_dssp TTSCEEEEEEECCTTSCC---------HHHHHHHHHHHHHHHC
T ss_pred cCCcchhheEEEecccCc---------hhHHHHHHHHHHHHhc
Confidence 3444 8999999993 1788999999887754
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-12 Score=157.39 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=48.1
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEE---------------------eCC---eEEEEEeCCC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVV---------------------TNH---GSITFLDTPG 125 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~---------------------~~~---~~i~~iDTPG 125 (1527)
.+|+++|++|+|||||+|+|++.....+..+++|++....... +++ .++.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 3699999999999999999999886667788888876555422 122 4799999999
Q ss_pred hhhH----HHHHH---hhccccCEEEEEEeCCCC
Q psy1758 126 HEAF----TAMRA---RGAKVTDIVVLVVAADDG 152 (1527)
Q Consensus 126 ~e~f----~~~~~---~~~~~aD~~IlVvda~~g 152 (1527)
+..+ ..+.. .+++.+|++++|+|++++
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8643 22222 456899999999999875
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-12 Score=164.74 Aligned_cols=161 Identities=19% Similarity=0.202 Sum_probs=106.8
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeee------EEE--EecCeEEEEEe
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKN------CSI--EYNGTRINIID 991 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~------~~~--~~~~~~iniiD 991 (1527)
....+|+++|.+|+|||||+++|+...-.-. .....|.++..+. ..+ ...+..++|||
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~--------------~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~D 104 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPK--------------ESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWD 104 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-------------------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEEC
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCCccceEEEEeccccccceeecCCCceEEEEEEE
Confidence 3457899999999999999999986521100 0111222222110 001 12368999999
Q ss_pred CCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcC--CccEEEEeccCCCCCChhhhHHHHHHHHhhhc
Q psy1758 992 TPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG--FKPIVVVNKIDRSNARPEWVVDATFDLFDKLC 1069 (1527)
Q Consensus 992 TPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~g--lp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~ 1069 (1527)
|||+..|.......++.+|++|+|+|++.. .....++..+.+++ .|+|+|+||+|+...+.. ..+++...+..
T Consensus 105 t~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v-~~~~~~~~~~~-- 179 (535)
T 3dpu_A 105 FGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNI-EQKKINERFPA-- 179 (535)
T ss_dssp CCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCC-CHHHHHHHCGG--
T ss_pred CCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccccccc-CHHHHHHHHHh--
Confidence 999999998888889999999999999864 45555666666655 999999999999754321 12333333322
Q ss_pred ccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1070 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1070 ~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
...|++++||++|. |+++|++.+.+.+...
T Consensus 180 -----~~~~~~~vSA~~g~----------gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 180 -----IENRFHRISCKNGD----------GVESIAKSLKSAVLHP 209 (535)
T ss_dssp -----GTTCEEECCC---------------CTTHHHHHHHHHTCT
T ss_pred -----cCCceEEEecCccc----------CHHHHHHHHHHHHhcc
Confidence 34579999999998 9999999999988654
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-12 Score=143.96 Aligned_cols=146 Identities=19% Similarity=0.251 Sum_probs=89.5
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+++|++|+|||||+++|+....... . .....+++. .+.+..++||||||+.+|.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~----~---------~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~ 69 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----V---------VSQEPLSAA-------DYDGSGVTLVDFPGHVKLR 69 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB----C---------CCSSCEEET-------TGGGSSCEEEECCCCGGGT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe----e---------eecCceEEE-------EeeCceEEEEECCCcHHHH
Confidence 4557999999999999999999986531100 0 000111111 1256789999999999999
Q ss_pred HHHHHHHHh----cCEEEEEEeCC-CC-CChhHHHHHHHHHH-------cCCccEEEEeccCCCCCCh-hhhHHHHHHHH
Q psy1758 1000 GEVERILSM----VDNVLLLIDAV-EG-PMPQTRFVTRKALK-------LGFKPIVVVNKIDRSNARP-EWVVDATFDLF 1065 (1527)
Q Consensus 1000 ~ev~~~l~~----aD~ailVVDa~-~G-~~~qt~~~~~~~~~-------~glp~IvviNKiD~~~a~~-~~v~~~~~~~~ 1065 (1527)
..+..+++. +|++|+|+|++ .. ........+..... .++|+++|+||+|+...+. .++.+.+.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~ 149 (218)
T 1nrj_B 70 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEI 149 (218)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHH
Confidence 988888877 99999999998 32 23333333333322 4899999999999987653 33333333333
Q ss_pred hhhcccccccCCcEEEeccccCC
Q psy1758 1066 DKLCATEEQLDFPVIYTSALHGY 1088 (1527)
Q Consensus 1066 ~~l~~~~~~~~~pvi~~SA~~g~ 1088 (1527)
..+... ...+++.+||++|.
T Consensus 150 ~~~~~~---~~~~~~~~Sa~~~~ 169 (218)
T 1nrj_B 150 QKVIER---RKKSLNEVERKINE 169 (218)
T ss_dssp HHHHHH---HHHHHHC-------
T ss_pred HHHHHH---Hhcccccccccccc
Confidence 222211 12467889999886
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.31 E-value=9e-13 Score=156.86 Aligned_cols=114 Identities=21% Similarity=0.164 Sum_probs=76.0
Q ss_pred ecCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCC-ChhhhHHH
Q psy1758 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-RPEWVVDA 1060 (1527)
Q Consensus 982 ~~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a-~~~~v~~~ 1060 (1527)
|+++.++||||||+.++... ....+|++++|+|+..+...|.... ...++|.++|+||+|+.++ +.....++
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~ 218 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGDNHTNVAIARHM 218 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCCChHHHHHHHHH
Confidence 67899999999999987665 3689999999999987643332111 1235789999999999754 23334445
Q ss_pred HHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1061 TFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1061 ~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+++.+..+.........|++++||++|. |++.|++.|.+.++
T Consensus 219 l~~~l~~~~~~~~~~~~~vi~iSA~~g~----------gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 219 YESALHILRRKYDEWQPRVLTCSALEKR----------GIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHSCCSBTTBCCEEEECBGGGTB----------SHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCCcEEEeeCCCCC----------CHHHHHHHHHHHHH
Confidence 5544332221111113478999999998 99999999988764
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4e-12 Score=164.46 Aligned_cols=118 Identities=17% Similarity=0.217 Sum_probs=80.2
Q ss_pred eEEEEEeCCCCCC---chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHH-HHHHcCCccEEEEeccCCCCCC---hh--
Q psy1758 985 TRINIIDTPGHAD---FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTR-KALKLGFKPIVVVNKIDRSNAR---PE-- 1055 (1527)
Q Consensus 985 ~~iniiDTPGh~d---f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~-~~~~~glp~IvviNKiD~~~a~---~~-- 1055 (1527)
..++||||||+.+ +...+..++..+|++|+|+|++.+........|. .+...+.|+++|+||+|+.... ++
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~ 253 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDV 253 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCH
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhH
Confidence 4699999999765 4556667889999999999999887777666664 4455689999999999985432 11
Q ss_pred ----hhHHHHHHHHhh-hccccc-----ccCCcEEEeccc--------------cCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1056 ----WVVDATFDLFDK-LCATEE-----QLDFPVIYTSAL--------------HGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1056 ----~v~~~~~~~~~~-l~~~~~-----~~~~pvi~~SA~--------------~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+.+.+...+.. +..... ....+++++||+ +|. |++.|++.+.+.+
T Consensus 254 e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~----------Gi~~L~~~L~~~l 323 (695)
T 2j69_A 254 EELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGT----------GFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTS----------SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhcc----------CHHHHHHHHHHHH
Confidence 111223222111 111000 123479999999 555 8999999988776
Q ss_pred C
Q psy1758 1112 P 1112 (1527)
Q Consensus 1112 p 1112 (1527)
.
T Consensus 324 ~ 324 (695)
T 2j69_A 324 T 324 (695)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.9e-12 Score=141.90 Aligned_cols=160 Identities=18% Similarity=0.167 Sum_probs=98.4
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d 997 (1527)
....+|+++|.+|+|||||+++++.....+.... ...|.+... ..+.+++ +.+.+|||+|...
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-------------~~~g~d~~~--~~i~~~~~~~~l~~~Dt~g~~~ 99 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-------------EVLGEDTYE--RTLMVDGESATIILLDMWENKG 99 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----------------CCTTEEE--EEEEETTEEEEEEEECCTTTTH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-------------CccceeeEE--EEEEECCeeeEEEEeecCCCcc
Confidence 3457899999999999999999985432221100 001222211 2334444 4578899999876
Q ss_pred c-hHHHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc
Q psy1758 998 F-GGEVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 998 f-~~ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~ 1071 (1527)
. ......+++.+|++|+|+|.++... .....++..+.. .++|+|+|.||+|+...+.- ..++... +.
T Consensus 100 ~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v-~~~e~~~-~a----- 172 (211)
T 2g3y_A 100 ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREV-SVSEGRA-CA----- 172 (211)
T ss_dssp HHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCS-CHHHHHH-HH-----
T ss_pred hhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceE-eHHHHHH-HH-----
Confidence 3 2222223467899999999986311 122233333432 37899999999998643211 0111111 11
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
....++++++||++|. |++++|+.+.+.+.
T Consensus 173 -~~~~~~~~e~SAk~g~----------~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 173 -VVFDCKFIETSAAVQH----------NVKELFEGIVRQVR 202 (211)
T ss_dssp -HHHTCEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred -HHcCCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 1124579999999998 99999999988763
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.2e-12 Score=153.16 Aligned_cols=155 Identities=15% Similarity=0.202 Sum_probs=79.7
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-ccccC--------CceeEEEEEEEEEeCCe--EEEEEeCCCh-------hhH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEA--------GGITQHIGAYNVVTNHG--SITFLDTPGH-------EAF 129 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~--------~giT~~~~~~~~~~~~~--~i~~iDTPG~-------e~f 129 (1527)
...+|+++|++|+|||||+++|.+... ..... ++++.+.....+...+. .+++|||||+ +.|
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 346799999999999999999866543 22221 34444444444444554 7899999998 555
Q ss_pred HHHHH-------hhccc-------------cCEEEEEEeC-CCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHH
Q psy1758 130 TAMRA-------RGAKV-------------TDIVVLVVAA-DDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRI 188 (1527)
Q Consensus 130 ~~~~~-------~~~~~-------------aD~~IlVvda-~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~ 188 (1527)
..+.. .+++. +|+++++++. ..+......+++..+ ..++|+|+|+||+|+........
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~Dl~~~~ev~~ 194 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKADTLTLKERER 194 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECCSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEECCCCCCHHHHHH
Confidence 44433 33322 2467777775 445666555555554 36799999999999976322111
Q ss_pred -HHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 189 -KQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 189 -~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
...+... ...+ .++++++||++|.| ++.|..+...
T Consensus 195 ~k~~i~~~---~~~~--~i~~~~~Sa~~~~~-~e~~~~l~~~ 230 (361)
T 2qag_A 195 LKKRILDE---IEEH--NIKIYHLPDAESDE-DEDFKEQTRL 230 (361)
T ss_dssp HHHHHHHH---TTCC---CCSCCCC----------CHHHHHH
T ss_pred HHHHHHHH---HHHC--CCCEEeCCCcCCCc-chhHHHHHHH
Confidence 1111111 1112 35899999999999 8877777643
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-12 Score=154.18 Aligned_cols=155 Identities=19% Similarity=0.286 Sum_probs=104.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEE---------------------------------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIG--------------------------------------- 107 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~--------------------------------------- 107 (1527)
..-|.|+++|++|+|||||+++|.+..+.....+.+|....
T Consensus 32 ~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 35569999999999999999999997763322222221100
Q ss_pred ---------------EEEEE-eCCeEEEEEeCCChhhH-------------HHHHHhhccccCEEEEEEeCCC-C-CcHH
Q psy1758 108 ---------------AYNVV-TNHGSITFLDTPGHEAF-------------TAMRARGAKVTDIVVLVVAADD-G-VMPQ 156 (1527)
Q Consensus 108 ---------------~~~~~-~~~~~i~~iDTPG~e~f-------------~~~~~~~~~~aD~~IlVvda~~-g-~~~q 156 (1527)
...+. .....++||||||...+ ..+...+++.+|++|+|+|+.+ . ...+
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~ 191 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH
Confidence 11111 12346899999997766 6777788999999999998754 2 2345
Q ss_pred HHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHH
Q psy1758 157 TREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227 (1527)
Q Consensus 157 t~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~ 227 (1527)
+...+..+...+.|+|+|+||+|+.+.... ....+ ... ......+++++|++++.++++.++...
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~-~~~~~-~~~----~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDKGTD-AVEIL-EGR----SFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCTTCC-SHHHH-TTS----SSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCCccc-HHHHH-cCc----cccccCCeEEEEECChHHhccCCCHHH
Confidence 566666666678899999999999753221 11111 111 112235899999999999988776654
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-11 Score=140.78 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=82.2
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch--
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG-- 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~-- 999 (1527)
..+|+++|++|+|||||+++|++.... ......|.|.......+.+++..++||||||+.+|.
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~ 103 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVV---------------SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYI 103 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCS---------------CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEE
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcc---------------cccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccc
Confidence 468999999999999999999865211 111224556556666778889999999999998875
Q ss_pred -HHHHHHHH------hcCEEEEEEeCCC-CCChhHHHHHHHHHHc-C----CccEEEEeccCCCCC
Q psy1758 1000 -GEVERILS------MVDNVLLLIDAVE-GPMPQTRFVTRKALKL-G----FKPIVVVNKIDRSNA 1052 (1527)
Q Consensus 1000 -~ev~~~l~------~aD~ailVVDa~~-G~~~qt~~~~~~~~~~-g----lp~IvviNKiD~~~a 1052 (1527)
......+. .+|++|+|+|+.. ........++..+... + .|+++|+||+|+...
T Consensus 104 ~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 104 NDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp CHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred hHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 23333332 6999999988764 3444445555555432 4 588999999998643
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=142.60 Aligned_cols=116 Identities=19% Similarity=0.108 Sum_probs=86.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH-------HHHHhh--c
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT-------AMRARG--A 137 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~-------~~~~~~--~ 137 (1527)
+.++|+++|++|+|||||+|+|.+..+ ..+..+++|.+.....+...+..++||||||+++|. ....++ .
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD 117 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence 467999999999999999999998875 455667777777677778888899999999986553 222222 3
Q ss_pred cccCEEEEEEeCCC-CCcHHHHHHHHHHHHc-C----CCEEEEEEcccCCcc
Q psy1758 138 KVTDIVVLVVAADD-GVMPQTREAIAHAKIS-G----VPLIVAINKIDKLDI 183 (1527)
Q Consensus 138 ~~aD~~IlVvda~~-g~~~qt~e~i~~~~~~-~----vpiIvviNKiDl~~~ 183 (1527)
..+|++++|+|++. .......+.+..+... + .|+++|+||+|+...
T Consensus 118 ~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 118 KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp CEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred CCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 57999999999876 3444444555544322 2 699999999999653
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-12 Score=154.80 Aligned_cols=172 Identities=21% Similarity=0.210 Sum_probs=105.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhh------------------hhcccceeEeeeeE----
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNE------------------IEKERGITIFSKNC---- 978 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~------------------~E~erGiTi~~~~~---- 978 (1527)
+.+.|+|+|++|+|||||+++|...... ....+ .++|..+ .....+..+.....
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~--~g~kV--~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~ 153 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIE--RGHRV--AVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTL 153 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCE--EEEEEC----------------CHHHHTCTTEEEECCC--CCH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHh--CCCce--EEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccc
Confidence 4578999999999999999999754100 00000 0011110 00112232221111
Q ss_pred ------------EEEecCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEec
Q psy1758 979 ------------SIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNK 1046 (1527)
Q Consensus 979 ------------~~~~~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNK 1046 (1527)
.+.+.++.+.||||||... .....+..+|.+|+|+|+..+...+... .....+|.++|+||
T Consensus 154 ~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p~ivVlNK 226 (355)
T 3p32_A 154 GGVTRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK----KGVLELADIVVVNK 226 (355)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGCSEEEEEC
T ss_pred cchhHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH----HhHhhcCCEEEEEC
Confidence 1234678999999999654 3334568999999999998765443321 11134699999999
Q ss_pred cCCCCC-ChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1047 IDRSNA-RPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1047 iD~~~a-~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
+|+.+. ..+...+++...+..+.........|++++||++|. |+++|+++|.++++.
T Consensus 227 ~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~----------Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 227 ADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGR----------GLAELWDTVERHRQV 284 (355)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTB----------SHHHHHHHHHHHHHH
T ss_pred CCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCC----------CHHHHHHHHHHHHHH
Confidence 998643 123334444444433322222234689999999998 999999999988754
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=7.1e-12 Score=136.51 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=96.8
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCC-
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHAD- 997 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~d- 997 (1527)
...+|+++|.+|+|||||+++|++....+.... ...|.+.. ...+.+++ ..+.+|||+|...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-------------~~~~~~~~--~~~~~~~~~~~~l~~~Dt~~~~~~ 69 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-------------EVLGEDTY--ERTLMVDGESATIILLDMWENKGE 69 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----------------GGGCTTEE--EEEEEETTEEEEEEEECCCCC---
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-------------cccceeEE--EEEEEECCeEEEEEEEEeccCcch
Confidence 346899999999999999999986433221100 00122221 22344444 4567899999765
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
+......+++.+|++++|+|.++....+ ...++..+.. .++|+++|.||+|+...+.- ..++.. .+.
T Consensus 70 ~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v-~~~~~~-~~a------ 141 (192)
T 2cjw_A 70 NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREV-SVSEGR-AXA------ 141 (192)
T ss_dssp -CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCS-CHHHHH-HHH------
T ss_pred hhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccc-cHHHHH-HHH------
Confidence 2222344578899999999998632111 2223333332 37899999999998542211 111111 111
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
....++++++||++|. |++++++.+.+.+.
T Consensus 142 ~~~~~~~~e~SA~~g~----------~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 142 VVFDXKFIETSAAVQH----------NVKELFEGIVRQVR 171 (192)
T ss_dssp HHTTCEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred HHhCCceEEeccccCC----------CHHHHHHHHHHHHH
Confidence 1123578999999998 99999999988763
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-12 Score=157.87 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=46.8
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEE---------------------e
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE---------------------Y 982 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~---------------------~ 982 (1527)
+|+|+|++|+|||||+|+|++..... ...+++|+....+.+. +
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~----------------~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~ 65 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEI----------------ANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYR 65 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC------------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcc----------------cCCCCcccCCceEEEeeccCCchHHhhhhccccccccc
Confidence 79999999999999999998763111 1123344433333221 1
Q ss_pred c---CeEEEEEeCCCCCCchH-------HHHHHHHhcCEEEEEEeCCCC
Q psy1758 983 N---GTRINIIDTPGHADFGG-------EVERILSMVDNVLLLIDAVEG 1021 (1527)
Q Consensus 983 ~---~~~iniiDTPGh~df~~-------ev~~~l~~aD~ailVVDa~~G 1021 (1527)
+ ..+++||||||+.++.. .....++.+|++++|+|++++
T Consensus 66 ~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 66 NGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp TTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 2 36799999999865321 112346889999999999875
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-11 Score=147.72 Aligned_cols=155 Identities=21% Similarity=0.215 Sum_probs=105.0
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC-eEEEEEeCCChhh-------HHHHHHhhccc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH-GSITFLDTPGHEA-------FTAMRARGAKV 139 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~-~~i~~iDTPG~e~-------f~~~~~~~~~~ 139 (1527)
....|+|+|++|+|||||+++|++........+.+|.......+.+++ ..+++|||||+.. +.....+.+..
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er 235 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIAR 235 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence 346799999999999999999998876556666677666666677765 6899999999632 11222334567
Q ss_pred cCEEEEEEeCCCCCcHHHHHHHHHHH-----HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 140 TDIVVLVVAADDGVMPQTREAIAHAK-----ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 140 aD~~IlVvda~~g~~~qt~e~i~~~~-----~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
+|.+++|+|+++....+.......+. ..+.|.++++||+|+... .....+.... .. ...+++++||+
T Consensus 236 a~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l---~~--~g~~vi~iSA~ 307 (416)
T 1udx_A 236 TRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADAL---AR--EGLAVLPVSAL 307 (416)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHH---HT--TTSCEEECCTT
T ss_pred HHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHH---Hh--cCCeEEEEECC
Confidence 99999999997211111111111111 236899999999999764 1122221111 01 12589999999
Q ss_pred CCCChhHHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQA 230 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~~ 230 (1527)
+++|+++|++.|....
T Consensus 308 ~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 308 TGAGLPALKEALHALV 323 (416)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHH
Confidence 9999999999997654
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=143.64 Aligned_cols=161 Identities=12% Similarity=0.113 Sum_probs=102.6
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH---
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG--- 1000 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~--- 1000 (1527)
+|.++|..++|||||+.++.... ... . ...-+.|+......+. ...+++||||||+.+|..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~--~~~-~------------~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l 64 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNM--QPL-D------------TLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSY 64 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCC--CSG-G------------GTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSH
T ss_pred CEEEECCCCCCHHHHHHHHHcCC--CCC-c------------cceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhh
Confidence 47899999999999998765331 100 0 0012334433333332 347899999999999964
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHH----HH--cCCccEEEEeccCCCCCCh-hhhHHHHHHHHh-hhccc-
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKA----LK--LGFKPIVVVNKIDRSNARP-EWVVDATFDLFD-KLCAT- 1071 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~----~~--~glp~IvviNKiD~~~a~~-~~v~~~~~~~~~-~l~~~- 1071 (1527)
....+++.++++|+|+|+++. .......|... .. .++|+++|.||+|+...+. .+...++...-. ++...
T Consensus 65 ~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~ 143 (331)
T 3r7w_B 65 DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELG 143 (331)
T ss_dssp HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSS
T ss_pred hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhc
Confidence 457789999999999999987 54555444332 22 3789999999999976432 111222222111 12211
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.++.+++++.+||++. ++.+.|..+++.+.
T Consensus 144 ~~~~~i~f~eTSAkd~-----------nV~eAFs~iv~~li 173 (331)
T 3r7w_B 144 LDGVQVSFYLTSIFDH-----------SIYEAFSRIVQKLI 173 (331)
T ss_dssp CSCCCEEEECCCSSSS-----------HHHHHHHHHHTTSS
T ss_pred ccccCceEEEeccCCC-----------cHHHHHHHHHHHHH
Confidence 1125678999999974 67777777776654
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-11 Score=156.54 Aligned_cols=161 Identities=19% Similarity=0.257 Sum_probs=109.9
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCcee------------------------------------------
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGIT------------------------------------------ 103 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT------------------------------------------ 103 (1527)
....|+|+++|++++|||||+|+|.+..+.....+.+|
T Consensus 48 ~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 48 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp GGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 35678999999999999999999998765211111111
Q ss_pred ---------EEEEEEEEEeCC-eEEEEEeCCCh-------------hhHHHHHHhhc-cccCEEEEEEeCCCCCcHHHH-
Q psy1758 104 ---------QHIGAYNVVTNH-GSITFLDTPGH-------------EAFTAMRARGA-KVTDIVVLVVAADDGVMPQTR- 158 (1527)
Q Consensus 104 ---------~~~~~~~~~~~~-~~i~~iDTPG~-------------e~f~~~~~~~~-~~aD~~IlVvda~~g~~~qt~- 158 (1527)
.+.....+...+ ..++|+||||. +.+..++..++ ..+|++++|+|++.+...+..
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 112222222322 36899999992 24555666665 578999999999998776665
Q ss_pred HHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 159 EAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 159 e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
..+..+...+.|+|+|+||+|+.+..... ..+........ ..+..+++++||++|.|+++|++.+...
T Consensus 208 ~ll~~L~~~g~pvIlVlNKiDlv~~~~~~--~~il~~~~~~l-~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIAKEVDPQGQRTIGVITKLDLMDEGTDA--RDVLENKLLPL-RRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHCTTCSSEEEEEECTTSSCTTCCS--HHHHTTCSSCC-SSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEEeCcccCCcchhh--HHHHHHHhhhh-hccCCceEEecccccccchhHHHHHHHH
Confidence 67777777889999999999997643211 11111111111 1134578999999999999999999754
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=134.69 Aligned_cols=158 Identities=21% Similarity=0.223 Sum_probs=104.8
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df 998 (1527)
...+|+++|+.|+|||||+++|++...... ..+.++.......+.+++ ..+.||||||+..|
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~----------------~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~ 67 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE----------------SKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 67 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCCSCEEEEEEEEETTEEEEEEEEECSSGGGT
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCC----------------CCCccceeEEEEEEEECCEEEEEEEEECCCchhh
Confidence 457899999999999999999986522111 011122223334555665 46788999999988
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
.......+..+|++++|+|+++....+. ..++..+.. .+.|+++++||+|+...+.. ..++.+.+.. .
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~-~~~~a~~l~~-------~ 139 (199)
T 2f9l_A 68 RRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAV-PTDEARAFAE-------K 139 (199)
T ss_dssp TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS-CHHHHHHHHH-------H
T ss_pred hhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCc-CHHHHHHHHH-------H
Confidence 8777777889999999999987432222 233333332 36788999999998643211 1122222221 1
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
..++++.+||+++. |++.+++.+.+.+.
T Consensus 140 ~~~~~~d~Sal~~~----------~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 140 NNLSFIETSALDST----------NVEEAFKNILTEIY 167 (199)
T ss_dssp TTCEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 23578889999998 99999998887663
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=147.96 Aligned_cols=157 Identities=22% Similarity=0.222 Sum_probs=93.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-------ccccCCceeEEE-----------------EEEE------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-------VFSEAGGITQHI-----------------GAYN------------ 110 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-------~~~~~~giT~~~-----------------~~~~------------ 110 (1527)
.+.++|+++|++|+|||||+++|...-. .....++.+... ..+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 4567999999999999999999864311 000011111100 0000
Q ss_pred ----------EEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccC
Q psy1758 111 ----------VVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK 180 (1527)
Q Consensus 111 ----------~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl 180 (1527)
+...+..+.||||||...- ....+..+|++++|+|+..+...+... ....+.|.++|+||+|+
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p~ivVlNK~Dl 229 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK----KGVLELADIVVVNKADG 229 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGCSEEEEECCCG
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH----HhHhhcCCEEEEECCCC
Confidence 0224578999999994321 122348899999999988754333221 01134699999999999
Q ss_pred Ccchh-HHHHHHHhhhcc-c-ccccCCCCcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 181 LDINL-DRIKQDLISEQV-I-PEEYGGASPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 181 ~~~~~-~~~~~~l~~~~~-~-~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
..... ......+..... . ....+...|++++||++|.|+++|++.|....
T Consensus 230 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 230 EHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp GGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 75321 122222221110 0 00011136899999999999999999997553
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.20 E-value=2e-11 Score=145.23 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=92.8
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcc------cc-ccccCCceeEEE-----------------EEEE------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKT------NV-VFSEAGGITQHI-----------------GAYN------------ 110 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~------~~-~~~~~~giT~~~-----------------~~~~------------ 110 (1527)
.+..+|+++|++|+|||||+++|... .+ .....++.|..- ..+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 46678999999999999999998632 11 111112111100 0000
Q ss_pred ----------EEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccC
Q psy1758 111 ----------VVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK 180 (1527)
Q Consensus 111 ----------~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl 180 (1527)
+.+.+..++||||||...+... ....+|++++|+|+..+...++... ...+.|.++|+||+|+
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl 206 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDG 206 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCT
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCC
Confidence 0144678999999997665543 3588999999999986533222111 1125689999999999
Q ss_pred Ccc-hhHHHHHHHhhh----cccccccCCCCcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 181 LDI-NLDRIKQDLISE----QVIPEEYGGASPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 181 ~~~-~~~~~~~~l~~~----~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
.+. +.......+... ......| ..+++++||++|.|+++|++.|....
T Consensus 207 ~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 207 DNHTNVAIARHMYESALHILRRKYDEW--QPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCSBTTB--CCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhccccccCC--CCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 763 222222222211 1000112 24789999999999999999997643
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=4.7e-11 Score=144.64 Aligned_cols=158 Identities=22% Similarity=0.288 Sum_probs=108.1
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC-eEEEEEeCCCCCC--
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGHAD-- 997 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-~~iniiDTPGh~d-- 997 (1527)
....|+|+|++|+|||||+++|+.....+. ....+|+.+....+.+++ ..++++||||+.+
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~----------------~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a 219 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHPKIA----------------PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 219 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCCEEC----------------CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCG
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCcccc----------------CcccceecceeeEEEecCcceEEEEeccccccch
Confidence 345799999999999999999976532111 122345555556677775 7899999999854
Q ss_pred -----chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHH-----cCCccEEEEeccCCCCCChhhhHHHHHHHHhh
Q psy1758 998 -----FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK-----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDK 1067 (1527)
Q Consensus 998 -----f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~-----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~ 1067 (1527)
+.....+.+..+|.+++++|++..+..+....++.... ...|.++|+||+|.... ..++++.+.+..
T Consensus 220 ~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~~ 296 (416)
T 1udx_A 220 SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALAR 296 (416)
T ss_dssp GGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHHT
T ss_pred hhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHHHh
Confidence 33445556677999999999972222222222233222 36899999999998753 334444443321
Q ss_pred hcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1068 LCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1068 l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
..++++++||+++. |+++|++.|.+.+...
T Consensus 297 -------~g~~vi~iSA~~g~----------gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 297 -------EGLAVLPVSALTGA----------GLPALKEALHALVRST 326 (416)
T ss_dssp -------TTSCEEECCTTTCT----------THHHHHHHHHHHHHTS
T ss_pred -------cCCeEEEEECCCcc----------CHHHHHHHHHHHHHhc
Confidence 23579999999998 9999999999887543
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=9.7e-12 Score=148.23 Aligned_cols=156 Identities=21% Similarity=0.201 Sum_probs=87.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc------cc-ccccCCceeE-------------------------EEEEEE-----
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT------NV-VFSEAGGITQ-------------------------HIGAYN----- 110 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~------~~-~~~~~~giT~-------------------------~~~~~~----- 110 (1527)
..+.|+|+|.+|+|||||+|+|.+. .+ .....++... ......
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 3689999999999999999999852 11 1111111110 000000
Q ss_pred ---------EEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCC
Q psy1758 111 ---------VVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL 181 (1527)
Q Consensus 111 ---------~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~ 181 (1527)
+...+..+.|+||||..... ......+|++++|+|+.++...+... . .....|.++|+||+|+.
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~---~-~il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK---R-GIIEMADLVAVTKSDGD 225 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGG
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH---H-HHHhcCCEEEEeeecCC
Confidence 01255689999999942111 22356899999999998754322211 1 12457889999999996
Q ss_pred cchh-HHHHHHHhhhcc--cccccCCCCcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 182 DINL-DRIKQDLISEQV--IPEEYGGASPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 182 ~~~~-~~~~~~l~~~~~--~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
+... ......+..... .+.......+++++||++|.|+++|+++|....
T Consensus 226 ~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 226 LIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp GHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 5321 111122211110 110001135789999999999999999997543
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-11 Score=134.00 Aligned_cols=127 Identities=22% Similarity=0.307 Sum_probs=82.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
....+|+++|++|+|||||+++|+....... ......+++. .+.+..+++|||||+.+|.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~-------------~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~ 105 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-------------VVSQEPLSAA-------DYDGSGVTLVDFPGHVKLR 105 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------------------CCCCTTCSEEEETTCCBSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc-------------cccCCCceee-------eecCCeEEEEECCCCchHH
Confidence 3457999999999999999999986521100 0001112221 2256789999999999998
Q ss_pred HHHHHHHHh----cCEEEEEEeCCCCCCh--hHHHHHHHHHH-------cCCccEEEEeccCCCCCC-hhhhHHHHHHHH
Q psy1758 1000 GEVERILSM----VDNVLLLIDAVEGPMP--QTRFVTRKALK-------LGFKPIVVVNKIDRSNAR-PEWVVDATFDLF 1065 (1527)
Q Consensus 1000 ~ev~~~l~~----aD~ailVVDa~~G~~~--qt~~~~~~~~~-------~glp~IvviNKiD~~~a~-~~~v~~~~~~~~ 1065 (1527)
..+..++.. +|++|+|+|++..... .....+..... .++|+++|+||+|+.+.+ .+++.+.+...+
T Consensus 106 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l 185 (193)
T 2ged_A 106 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEI 185 (193)
T ss_dssp CCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHH
Confidence 777777766 8999999999822111 12222222221 389999999999997654 455555555444
Q ss_pred h
Q psy1758 1066 D 1066 (1527)
Q Consensus 1066 ~ 1066 (1527)
.
T Consensus 186 ~ 186 (193)
T 2ged_A 186 Q 186 (193)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.1e-11 Score=135.53 Aligned_cols=148 Identities=18% Similarity=0.207 Sum_probs=92.0
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccc------cccCCceeEE--------EEEEEE------------------EeCC
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVV------FSEAGGITQH--------IGAYNV------------------VTNH 115 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~------~~~~~giT~~--------~~~~~~------------------~~~~ 115 (1527)
+.++|+++|++|+|||||+++|...... ....++.+.+ .....+ .+.+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 5678999999999999999999765211 1111111100 000111 1234
Q ss_pred eEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcc---hhHHHHHHH
Q psy1758 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDI---NLDRIKQDL 192 (1527)
Q Consensus 116 ~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~---~~~~~~~~l 192 (1527)
..+.+|||||+-.-. ......++.+++|+|+.++....+ ......+.|.++|+||+|+.+. +.......+
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~~~----~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 181 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDVVE----KHPEIFRVADLIVINKVALAEAVGADVEKMKADA 181 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTHHH----HCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchhhh----hhhhhhhcCCEEEEecccCCcchhhHHHHHHHHH
Confidence 578999999951100 011135689999999998754332 2223346899999999998642 222222222
Q ss_pred hhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 193 ISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 193 ~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
.. .+...+++++||++|.|++++++.|...
T Consensus 182 ~~-------~~~~~~i~~~Sa~~g~gi~~l~~~l~~~ 211 (221)
T 2wsm_A 182 KL-------INPRAKIIEMDLKTGKGFEEWIDFLRGI 211 (221)
T ss_dssp HH-------HCTTSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HH-------hCCCCeEEEeecCCCCCHHHHHHHHHHH
Confidence 21 1234689999999999999999999754
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.15 E-value=3.1e-11 Score=144.44 Aligned_cols=172 Identities=15% Similarity=0.207 Sum_probs=101.2
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCc------cccccc-cc----------------ceecchhhhh--------cc--
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGT------FRKNQN-IN----------------ARIMDSNEIE--------KE-- 968 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~------~~~~~~-~~----------------~~~~D~~~~E--------~e-- 968 (1527)
..+|+++|.+|+|||||+|+|++..-. ..+... +. ..+.+...+. +-
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 468999999999999999999875321 111010 00 0001221111 11
Q ss_pred --cceeEeeeeEEEEec-CeEEEEEeCCCCCC-------------chHHHHHHHHhcC-EEEEEEeCCCCCChhHHH-HH
Q psy1758 969 --RGITIFSKNCSIEYN-GTRINIIDTPGHAD-------------FGGEVERILSMVD-NVLLLIDAVEGPMPQTRF-VT 1030 (1527)
Q Consensus 969 --rGiTi~~~~~~~~~~-~~~iniiDTPGh~d-------------f~~ev~~~l~~aD-~ailVVDa~~G~~~qt~~-~~ 1030 (1527)
.|+........+... +..++||||||..+ +...+..++..++ .+++|+|+..+...+... ++
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~ 190 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA 190 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence 344333333333333 57899999999643 3344555665555 555677887766666543 66
Q ss_pred HHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC-CcEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1031 RKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1031 ~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~-~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
+.+...+.|.++|+||+|+.+...+ ..+.+.. .. ...... ++++++||++|. |++.|++++.+
T Consensus 191 ~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~---~~--~~l~~~~~~v~~~SA~~~~----------~i~~l~~~l~~ 254 (353)
T 2x2e_A 191 KEVDPQGQRTIGVITKLDLMDEGTD-ARDVLEN---KL--LPLRRGYIGVVNRSQKDID----------GKKDITAALAA 254 (353)
T ss_dssp HHHCTTCTTEEEEEECGGGSCTTCC-CHHHHTT---CS--SCCTTCEEECCCCCHHHHH----------TTCCHHHHHHH
T ss_pred HHhCcCCCceEEEeccccccCcchh-HHHHHhC---Cc--ccccCCceEEEeCCccccc----------ccccHHHHHHH
Confidence 6666678999999999999754321 1111110 00 011122 367889999998 77788887765
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-11 Score=137.43 Aligned_cols=170 Identities=15% Similarity=0.174 Sum_probs=100.8
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccc---eecchhhhhcccceeEee-ee---EEE----------Ee
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA---RIMDSNEIEKERGITIFS-KN---CSI----------EY 982 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~---~~~D~~~~E~erGiTi~~-~~---~~~----------~~ 982 (1527)
.+.++|+++|++|+|||||+++|+.......+...+.. .-.|....+ ..|+++.. .. +.+ .+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVR-RFGIKAEAISTGKECHLDAHMIYHRLKKF 106 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHH-TTTCEEEECCCTTCSSCCHHHHHTTGGGG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHH-hCCCcEEEecCCceeecccHHHHHHHHhc
Confidence 45689999999999999999999976322111111110 011222222 12443211 11 111 34
Q ss_pred cCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHH
Q psy1758 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATF 1062 (1527)
Q Consensus 983 ~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~ 1062 (1527)
.+..+.||||||..+...... ...+.+++|+|+..+... .+..+...+.|.++|+||+|+.+.. ....+++.
T Consensus 107 ~~~d~iiidt~G~~~~~~~~~---~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~~~~-~~~~~~~~ 178 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPVDFD---LGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALAEAV-GADVEKMK 178 (221)
T ss_dssp TTCSEEEEEEEEBSSGGGGCC---CSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGHHHH-TCCHHHHH
T ss_pred CCCCEEEEeCCCCCCCCchhc---cccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCCcch-hhHHHHHH
Confidence 567899999999422111100 146889999999887432 2333344578999999999985320 01122333
Q ss_pred HHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1063 DLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1063 ~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
+.+..+. ...|++++||++|. |+++|++.+.+.+..
T Consensus 179 ~~~~~~~-----~~~~i~~~Sa~~g~----------gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 179 ADAKLIN-----PRAKIIEMDLKTGK----------GFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHC-----TTSEEEECBTTTTB----------THHHHHHHHHHHHC-
T ss_pred HHHHHhC-----CCCeEEEeecCCCC----------CHHHHHHHHHHHHHH
Confidence 3232221 13579999999998 999999999887653
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=126.47 Aligned_cols=158 Identities=21% Similarity=0.219 Sum_probs=104.8
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCe--EEEEEeCCCCCC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT--RINIIDTPGHAD 997 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~--~iniiDTPGh~d 997 (1527)
+...+|+|+|+.|+|||||+++|+....... ..+.++.+.....+.+++. .+.+|||||+..
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~----------------~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE----------------SKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCS----------------CCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC----------------CCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence 3457899999999999999999986522111 0112233333445666664 456799999999
Q ss_pred chHHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 FGGEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 f~~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
|...+...++.+|++++|+|.++.... .....+..+.. .+.|+++++||+|+.+.... ..++.+.+..
T Consensus 91 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~-~~~~a~~l~~------- 162 (191)
T 1oix_A 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAV-PTDEARAFAE------- 162 (191)
T ss_dssp SSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS-CHHHHHHHHH-------
T ss_pred hhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccc-CHHHHHHHHH-------
Confidence 988888888899999999998764221 22223333332 36788999999998642211 1122222211
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...++++.+||+++. |++.+++.+.+.+
T Consensus 163 ~~~~~~ld~Sald~~----------~v~~l~~~l~~~i 190 (191)
T 1oix_A 163 KNGLSFIETSALDST----------NVEAAFQTILTEI 190 (191)
T ss_dssp HTTCEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred HcCCEEEEEeCCCCC----------CHHHHHHHHHHHh
Confidence 123568889999998 9999999987654
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.9e-11 Score=149.44 Aligned_cols=116 Identities=24% Similarity=0.353 Sum_probs=90.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc---cccCCceeEEEEEEE---------------------------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV---FSEAGGITQHIGAYN--------------------------------- 110 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~---~~~~~giT~~~~~~~--------------------------------- 110 (1527)
...++|+|+|++|+|||||+|+|.+..+. .+..++++.......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999998763 555555543221110
Q ss_pred ---EEeCC---eEEEEEeCCChhh-----------HHHHHHhhccccCEEEEEEeCCC-CCcHHHHHHHHHHHHcCCCEE
Q psy1758 111 ---VVTNH---GSITFLDTPGHEA-----------FTAMRARGAKVTDIVVLVVAADD-GVMPQTREAIAHAKISGVPLI 172 (1527)
Q Consensus 111 ---~~~~~---~~i~~iDTPG~e~-----------f~~~~~~~~~~aD~~IlVvda~~-g~~~qt~e~i~~~~~~~vpiI 172 (1527)
+.+.+ ..++||||||+.. |......++..+|++++|+|+++ +...+...++..+...+.|++
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvi 222 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIR 222 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEE
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEE
Confidence 01111 3689999999765 77788888899999999999998 577788888888777788999
Q ss_pred EEEEcccCCc
Q psy1758 173 VAINKIDKLD 182 (1527)
Q Consensus 173 vviNKiDl~~ 182 (1527)
+|+||+|+..
T Consensus 223 lVlNK~Dl~~ 232 (550)
T 2qpt_A 223 VVLNKADMVE 232 (550)
T ss_dssp EEEECGGGSC
T ss_pred EEEECCCccC
Confidence 9999999975
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.3e-10 Score=129.26 Aligned_cols=114 Identities=19% Similarity=0.162 Sum_probs=72.6
Q ss_pred eEEEEEeCCChhhHHHHH------HhhccccCEEEEEEeCCCCCcHHHHHH-----HHHHHHcCCCEEEEEEcccCCcch
Q psy1758 116 GSITFLDTPGHEAFTAMR------ARGAKVTDIVVLVVAADDGVMPQTREA-----IAHAKISGVPLIVAINKIDKLDIN 184 (1527)
Q Consensus 116 ~~i~~iDTPG~e~f~~~~------~~~~~~aD~~IlVvda~~g~~~qt~e~-----i~~~~~~~vpiIvviNKiDl~~~~ 184 (1527)
..+.||||||+..+.... ...+.. +++++|+|+.....+..... .......+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 379999999987764332 235566 89999999877555443221 122334579999999999987532
Q ss_pred h-HHHHHHHhhh-----cc----------------cccccCCCCcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 185 L-DRIKQDLISE-----QV----------------IPEEYGGASPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 185 ~-~~~~~~l~~~-----~~----------------~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
. ......+... .. ....++...+++++||++|.|+++|+++|....
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence 1 1111111000 00 012333345899999999999999999997554
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.5e-10 Score=136.09 Aligned_cols=110 Identities=18% Similarity=0.166 Sum_probs=86.4
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChh-------hHHHHHHhhccccCE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE-------AFTAMRARGAKVTDI 142 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e-------~f~~~~~~~~~~aD~ 142 (1527)
..|+|+|.||+|||||+|+|++.....+..+++|++.....+.+.+.++.|+||||-- .........++.||+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~ 152 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL 152 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence 4899999999999999999999998889999999999999999999999999999931 122333456688999
Q ss_pred EEEEEeCCCCCcHHHHHHH-HHHHH-----cCCCEEEEEEcccCC
Q psy1758 143 VVLVVAADDGVMPQTREAI-AHAKI-----SGVPLIVAINKIDKL 181 (1527)
Q Consensus 143 ~IlVvda~~g~~~qt~e~i-~~~~~-----~~vpiIvviNKiDl~ 181 (1527)
+++|+|+.+... ..+.+ ..+.. ...|.++++||+|..
T Consensus 153 il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 153 LFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred cccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 999999987432 12211 22222 246888999999974
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.3e-11 Score=141.89 Aligned_cols=114 Identities=20% Similarity=0.181 Sum_probs=67.7
Q ss_pred ecCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHH
Q psy1758 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDA 1060 (1527)
Q Consensus 982 ~~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~ 1060 (1527)
+.++.+.|+||||..+.. ......+|.+++|+|+..|...|... . .-...|.++|+||+|+.+.. ......+
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~--~--~il~~~~ivVlNK~Dl~~~~~~~~~~~~ 236 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK--R--GIIEMADLVAVTKSDGDLIVPARRIQAE 236 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGGHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH--H--HHHhcCCEEEEeeecCCCchhHHHHHHH
Confidence 467899999999965332 33467899999999998764333211 1 12467899999999985321 1112233
Q ss_pred HHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1061 TFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1061 ~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+...+..+.........|++++||++|. |++.|+++|.+.++
T Consensus 237 l~~~l~~~~~~a~~~~~~vi~iSA~~g~----------Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 237 YVSALKLLRKRSQVWKPKVIRISARSGE----------GISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHTTCC-----CCCEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HHHHHHhcCccccCCCceEEEEecCCCC----------CHHHHHHHHHHHHH
Confidence 3322221111100113478999999998 99999999988764
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.09 E-value=8.9e-11 Score=147.79 Aligned_cols=132 Identities=22% Similarity=0.195 Sum_probs=88.6
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCc---ccccccccc-e-ecchhhhhcccceeEe------------------ee
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGT---FRKNQNINA-R-IMDSNEIEKERGITIF------------------SK 976 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~---~~~~~~~~~-~-~~D~~~~E~erGiTi~------------------~~ 976 (1527)
...++|+|+|++|+|||||+|+|++.... +.....+.. . +......+...|.++. ..
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45679999999999999999999987431 111111111 0 1100000011111110 01
Q ss_pred eEEEEecC---eEEEEEeCCCCCC-----------chHHHHHHHHhcCEEEEEEeCCC-CCChhHHHHHHHHHHcCCccE
Q psy1758 977 NCSIEYNG---TRINIIDTPGHAD-----------FGGEVERILSMVDNVLLLIDAVE-GPMPQTRFVTRKALKLGFKPI 1041 (1527)
Q Consensus 977 ~~~~~~~~---~~iniiDTPGh~d-----------f~~ev~~~l~~aD~ailVVDa~~-G~~~qt~~~~~~~~~~glp~I 1041 (1527)
...+.+.+ ..++||||||+.+ |...+..++..+|++|+|+|+++ +...++..++..+...+.|++
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvi 222 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIR 222 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEE
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEE
Confidence 11222222 4689999999876 67788888999999999999988 678888888888887889999
Q ss_pred EEEeccCCCC
Q psy1758 1042 VVVNKIDRSN 1051 (1527)
Q Consensus 1042 vviNKiD~~~ 1051 (1527)
+|+||+|+..
T Consensus 223 lVlNK~Dl~~ 232 (550)
T 2qpt_A 223 VVLNKADMVE 232 (550)
T ss_dssp EEEECGGGSC
T ss_pred EEEECCCccC
Confidence 9999999864
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-10 Score=148.15 Aligned_cols=172 Identities=15% Similarity=0.201 Sum_probs=107.0
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccC------cccccc---------c-c-------cceecchhhh----h--------
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSG------TFRKNQ---------N-I-------NARIMDSNEI----E-------- 966 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g------~~~~~~---------~-~-------~~~~~D~~~~----E-------- 966 (1527)
.++|+++|.+++|||||+|+|++..- ...+.+ . . ...+.|...+ +
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 46899999999999999999997531 111000 0 0 0001111111 0
Q ss_pred cccceeEeeeeEEEEec-CeEEEEEeCCCCCC-------------chHHHHHHH-HhcCEEEEEEeCCCCCChhHH-HHH
Q psy1758 967 KERGITIFSKNCSIEYN-GTRINIIDTPGHAD-------------FGGEVERIL-SMVDNVLLLIDAVEGPMPQTR-FVT 1030 (1527)
Q Consensus 967 ~erGiTi~~~~~~~~~~-~~~iniiDTPGh~d-------------f~~ev~~~l-~~aD~ailVVDa~~G~~~qt~-~~~ 1030 (1527)
...|++-+.....+.+. ...+.||||||... +...+..++ ..+|.+++|+||+.++..+.. .++
T Consensus 131 ~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll 210 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA 210 (772)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHH
T ss_pred CCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHH
Confidence 11344433333444443 35799999999654 223334444 478999999999998887776 677
Q ss_pred HHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC-CcEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1031 RKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD-FPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1031 ~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~-~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
..+...+.|.|+|+||+|+...... ...+.. .... ..... .|++++||++|. |++.|++++.+
T Consensus 211 ~~L~~~g~pvIlVlNKiDlv~~~~~--~~~il~--~~~~--~l~lg~~~VV~iSA~~G~----------GvdeL~eaI~~ 274 (772)
T 3zvr_A 211 KEVDPQGQRTIGVITKLDLMDEGTD--ARDVLE--NKLL--PLRRGYIGVVNRSQKDID----------GKKDITAALAA 274 (772)
T ss_dssp HHHCTTCSSEEEEEECTTSSCTTCC--SHHHHT--TCSS--CCSSCEEECCCCCCEESS----------SSEEHHHHHHH
T ss_pred HHHHhcCCCEEEEEeCcccCCcchh--hHHHHH--HHhh--hhhccCCceEEecccccc----------cchhHHHHHHH
Confidence 7787889999999999999754311 111110 0000 00112 368899999998 88888888876
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=7.9e-11 Score=134.31 Aligned_cols=85 Identities=22% Similarity=0.243 Sum_probs=56.5
Q ss_pred hcCEEEEEEeCCCC--CC-hhHHHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEE
Q psy1758 1008 MVDNVLLLIDAVEG--PM-PQTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVI 1080 (1527)
Q Consensus 1008 ~aD~ailVVDa~~G--~~-~qt~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi 1080 (1527)
.+|++|+|+|+++. .. ......+..+. ..++|+++|.||+|+...+ .+++....... ...+|++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~---~v~~~~~~~~~------~~~~~~~ 232 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER---YIRDAHTFALS------KKNLQVV 232 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHH---HHHHHHHHHHT------SSSCCEE
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccH---HHHHHHHHHHh------cCCCeEE
Confidence 58999999999875 22 22233333332 2479999999999985422 22333332211 1246899
Q ss_pred EeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1081 YTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1081 ~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+||++|. |++++++.|.+.+
T Consensus 233 e~SAk~g~----------gv~elf~~l~~~l 253 (255)
T 3c5h_A 233 ETSARSNV----------NVDLAFSTLVQLI 253 (255)
T ss_dssp ECBTTTTB----------SHHHHHHHHHHHH
T ss_pred EEECCCCC----------CHHHHHHHHHHHh
Confidence 99999998 9999999998764
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-10 Score=133.95 Aligned_cols=154 Identities=14% Similarity=0.192 Sum_probs=78.0
Q ss_pred CCEEEEEecCCCChhHHHHHHHcc-ccccccC--------CceeEEEEEEEEEeC--CeEEEEEeCCCh-------hhHH
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKT-NVVFSEA--------GGITQHIGAYNVVTN--HGSITFLDTPGH-------EAFT 130 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~-~~~~~~~--------~giT~~~~~~~~~~~--~~~i~~iDTPG~-------e~f~ 130 (1527)
..+|+++|++|+|||||+++|.+. .+..+.. +++......+.+... ...+++|||||+ +.|.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 467899999999999999998765 3322211 111111112222222 237899999997 4443
Q ss_pred HHHH-------hhcc-------------ccCEEEEEEeCCC-CCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHH-H
Q psy1758 131 AMRA-------RGAK-------------VTDIVVLVVAADD-GVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDR-I 188 (1527)
Q Consensus 131 ~~~~-------~~~~-------------~aD~~IlVvda~~-g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~-~ 188 (1527)
.+.. .+++ .+++++++++.+. ++.+...+.+..+. .++|+++|+||+|+....... .
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e~~~~ 176 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKERERL 176 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHHHHHH
Confidence 3332 2222 2345666666554 57776666666553 467999999999997532111 1
Q ss_pred HHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 189 KQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 189 ~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
...... ....+ .++++++||++| |++++|+.+...
T Consensus 177 ~~~~~~---~~~~~--~~~~~e~Sa~~~-~v~e~f~~l~~~ 211 (301)
T 2qnr_A 177 KKRILD---EIEEH--NIKIYHLPDAES-DEDEDFKEQTRL 211 (301)
T ss_dssp HHHHHH---HHHHT--TCCCCCCC----------CHHHHHH
T ss_pred HHHHHH---HHHHc--CCeEEecCCccc-cccHHHHHHHHH
Confidence 111111 11122 258999999999 999999988754
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-10 Score=136.56 Aligned_cols=82 Identities=20% Similarity=0.135 Sum_probs=62.0
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC-----------------eEEEEEeCCChhhHHHH
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH-----------------GSITFLDTPGHEAFTAM 132 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~-----------------~~i~~iDTPG~e~f~~~ 132 (1527)
.+|+++|.+|+|||||+|+|++..+..+..+++|++.....+.+++ ..+.||||||+..+...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 5799999999999999999999887777778888776665666655 46999999998776432
Q ss_pred -------HHhhccccCEEEEEEeCCC
Q psy1758 133 -------RARGAKVTDIVVLVVAADD 151 (1527)
Q Consensus 133 -------~~~~~~~aD~~IlVvda~~ 151 (1527)
....++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2234688999999999986
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.4e-10 Score=137.15 Aligned_cols=97 Identities=16% Similarity=0.240 Sum_probs=65.3
Q ss_pred CeEEEEEeCCCCCCc-------------hHHHHHHHHhcCEEEEEEeCCC-CCCh-hHHHHHHHHHHcCCccEEEEeccC
Q psy1758 984 GTRINIIDTPGHADF-------------GGEVERILSMVDNVLLLIDAVE-GPMP-QTRFVTRKALKLGFKPIVVVNKID 1048 (1527)
Q Consensus 984 ~~~iniiDTPGh~df-------------~~ev~~~l~~aD~ailVVDa~~-G~~~-qt~~~~~~~~~~glp~IvviNKiD 1048 (1527)
...+.||||||..++ ...+..++..+|++|+|+|+.. .... +...+++.+...+.|.|+|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 457999999998887 5566778899999999998753 2222 223344444456889999999999
Q ss_pred CCCCChhhhHHHHHHHHhhhcccccccCCcEEEeccccCC
Q psy1758 1049 RSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088 (1527)
Q Consensus 1049 ~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~ 1088 (1527)
+...... .. +.+ ......+..|++.+|++++.
T Consensus 215 l~~~~~~-~~----~~~---~~~~~~~~~~~~~v~~~s~~ 246 (360)
T 3t34_A 215 LMDKGTD-AV----EIL---EGRSFKLKYPWVGVVNRSQA 246 (360)
T ss_dssp GCCTTCC-SH----HHH---TTSSSCCSSCCEEECCCCHH
T ss_pred cCCCccc-HH----HHH---cCccccccCCeEEEEECChH
Confidence 8754321 11 111 11223455788899999875
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.7e-10 Score=133.71 Aligned_cols=113 Identities=17% Similarity=0.312 Sum_probs=86.7
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC---
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD--- 997 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d--- 997 (1527)
..-+|+|+|.||+|||||+|+|++.... +...+++|+++..+.+.+.+.++.|+||||..+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~----------------v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~ 134 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESE----------------AAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAK 134 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCC----------------GGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC--
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCc----------------ccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCch
Confidence 3468999999999999999999865322 233467899999999999999999999999754
Q ss_pred ----chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHc-----CCccEEEEeccCCC
Q psy1758 998 ----FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL-----GFKPIVVVNKIDRS 1050 (1527)
Q Consensus 998 ----f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~-----glp~IvviNKiD~~ 1050 (1527)
.+..+...++.||++++|||++++. .+...+...+... ..|.++++||+|+.
T Consensus 135 ~~~~~g~~~l~~i~~ad~il~vvD~~~p~-~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 135 DGRGRGKQVIAVARTCNLLFIILDVNKPL-HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp ---CHHHHHHHHHHHCSEEEEEEETTSHH-HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred hhhHHHHHHHHHHHhcCccccccccCccH-HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 3345667789999999999998742 2223333344433 46889999999974
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-09 Score=128.93 Aligned_cols=127 Identities=13% Similarity=0.078 Sum_probs=86.3
Q ss_pred eEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCC-----------CCcHHHHHHHHHHHH----c
Q psy1758 103 TQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADD-----------GVMPQTREAIAHAKI----S 167 (1527)
Q Consensus 103 T~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~-----------g~~~qt~e~i~~~~~----~ 167 (1527)
|..+....+..++..+.+|||+||+.|...+..+++.++++|+|+|+++ .-...+...+..+.. .
T Consensus 148 TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~ 227 (340)
T 4fid_A 148 TTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLK 227 (340)
T ss_dssp CCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGT
T ss_pred eeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccC
Confidence 3344556677778899999999999999999999999999999999982 112334444444332 4
Q ss_pred CCCEEEEEEcccCCcch------------------hHHHHHHHhhhc------c-cccccC-----------CCCcEEEe
Q psy1758 168 GVPLIVAINKIDKLDIN------------------LDRIKQDLISEQ------V-IPEEYG-----------GASPFISI 211 (1527)
Q Consensus 168 ~vpiIvviNKiDl~~~~------------------~~~~~~~l~~~~------~-~~~~~~-----------~~~~v~~i 211 (1527)
++|+++++||+|+.... .++....+.... . ...... ..+.++++
T Consensus 228 ~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~T 307 (340)
T 4fid_A 228 GAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPT 307 (340)
T ss_dssp TSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEE
T ss_pred CCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEE
Confidence 78999999999986421 111111111111 0 000001 24678999
Q ss_pred eccCCCChhHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~ 229 (1527)
||++..||..+|+.+...
T Consensus 308 sA~dt~nv~~vF~~v~~~ 325 (340)
T 4fid_A 308 NATDGSNIKRVFMLAVDV 325 (340)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred EeeCcHHHHHHHHHHHHH
Confidence 999999999999998754
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=98.92 E-value=6.9e-10 Score=132.45 Aligned_cols=82 Identities=16% Similarity=0.103 Sum_probs=60.1
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC---------------------CeEEEEEeCCChhh
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN---------------------HGSITFLDTPGHEA 128 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~---------------------~~~i~~iDTPG~e~ 128 (1527)
.+|+++|.+|+|||||+++|++........+++|++.....+... +..+.||||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 469999999999999999998876545555555554433333322 34799999999765
Q ss_pred H-------HHHHHhhccccCEEEEEEeCCC
Q psy1758 129 F-------TAMRARGAKVTDIVVLVVAADD 151 (1527)
Q Consensus 129 f-------~~~~~~~~~~aD~~IlVvda~~ 151 (1527)
+ .......++.+|++++|+|+.+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 4 2333456789999999999986
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.1e-09 Score=119.60 Aligned_cols=149 Identities=21% Similarity=0.236 Sum_probs=86.6
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEE--------------EEEEEeC------------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIG--------------AYNVVTN------------------ 114 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~--------------~~~~~~~------------------ 114 (1527)
.+.++|+++|++|+|||||+++|....+.....+.+..++. ...+..+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 35689999999999999999999876543222222222221 1111111
Q ss_pred --CeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcc---hhHHHH
Q psy1758 115 --HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDI---NLDRIK 189 (1527)
Q Consensus 115 --~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~---~~~~~~ 189 (1527)
+..+.++||+|.-.- ....-...+..+.++|+..+...... .....+.|.++|+||+|+.+. ......
T Consensus 116 ~~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~ 188 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLADAVGADIKKME 188 (226)
T ss_dssp GGGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred cCCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccCchhHHHHHHHH
Confidence 115677777773100 01111344667788886543211110 011246889999999998642 122222
Q ss_pred HHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 190 QDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 190 ~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
..+. .+....+++++||++|.|++++++.|...
T Consensus 189 ~~~~-------~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 221 (226)
T 2hf9_A 189 NDAK-------RINPDAEVVLLSLKTMEGFDKVLEFIEKS 221 (226)
T ss_dssp HHHH-------HHCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHH-------HhCCCCeEEEEEecCCCCHHHHHHHHHHH
Confidence 2111 11234689999999999999999999754
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-09 Score=131.22 Aligned_cols=153 Identities=19% Similarity=0.233 Sum_probs=75.8
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccC--------CceeEEEEEEEEEeCC--eEEEEEeCCChhhHH-------H
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEA--------GGITQHIGAYNVVTNH--GSITFLDTPGHEAFT-------A 131 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~--------~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~-------~ 131 (1527)
..+|+|+|++|+|||||+++|.+..+..... +++..+...+.+...+ ..+++|||||...+. .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 3578999999999999999999876521111 1122222222222222 268999999976642 1
Q ss_pred HH------------------Hhhccc--cCEEEEEEeCC-CCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh-HHHH
Q psy1758 132 MR------------------ARGAKV--TDIVVLVVAAD-DGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL-DRIK 189 (1527)
Q Consensus 132 ~~------------------~~~~~~--aD~~IlVvda~-~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~-~~~~ 189 (1527)
+. ...+.. +|+++++++.+ .++.+...+++..+.. ++|+|+|+||+|+..... ....
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~~~ev~~~k 189 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFK 189 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCccHHHHHHHH
Confidence 10 112233 34566666665 5777777777776654 899999999999975321 1111
Q ss_pred HHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHH
Q psy1758 190 QDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227 (1527)
Q Consensus 190 ~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~ 227 (1527)
..+... ...+ .++++++||+++.++++++..+.
T Consensus 190 ~~i~~~---~~~~--~i~~~~~sa~~~~~v~~~~~~l~ 222 (418)
T 2qag_C 190 KQIMKE---IQEH--KIKIYEFPETDDEEENKLVKKIK 222 (418)
T ss_dssp HHHHHH---HHHH--TCCCCCCC---------------
T ss_pred HHHHHH---HHHc--CCeEEeCCCCCCcCHHHHHHHHH
Confidence 111111 1111 25788999999999998777664
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.88 E-value=5.9e-09 Score=123.58 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=59.7
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC-----------------e
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-----------------T 985 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-----------------~ 985 (1527)
.+|+|+|++|+|||||+++|+...... ...+++|+.+..+.+.+.+ .
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v----------------~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~ 66 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEA----------------ANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPT 66 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC----------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcc----------------cCCCCceECceEEEEecCCcccceeeeeecccceeee
Confidence 479999999999999999998753111 1223445555555555544 5
Q ss_pred EEEEEeCCCCCCchH-------HHHHHHHhcCEEEEEEeCCC
Q psy1758 986 RINIIDTPGHADFGG-------EVERILSMVDNVLLLIDAVE 1020 (1527)
Q Consensus 986 ~iniiDTPGh~df~~-------ev~~~l~~aD~ailVVDa~~ 1020 (1527)
.++||||||+.++.. .....++.+|++++|+|+++
T Consensus 67 ~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 67 TMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 799999999988742 34556899999999999986
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-09 Score=124.75 Aligned_cols=115 Identities=23% Similarity=0.176 Sum_probs=72.9
Q ss_pred CeEEEEEeCCCCCCchH------HHHHHHHhcCEEEEEEeCCCCCChhHHH-H----HHHHHHcCCccEEEEeccCCCCC
Q psy1758 984 GTRINIIDTPGHADFGG------EVERILSMVDNVLLLIDAVEGPMPQTRF-V----TRKALKLGFKPIVVVNKIDRSNA 1052 (1527)
Q Consensus 984 ~~~iniiDTPGh~df~~------ev~~~l~~aD~ailVVDa~~G~~~qt~~-~----~~~~~~~glp~IvviNKiD~~~a 1052 (1527)
++.+.||||||..++.. .+..++.. +.+++++|+.....+.... . +......++|.++|+||+|+...
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccc
Confidence 36899999999877532 22234455 8999999998766554422 1 12233458999999999998653
Q ss_pred ChhhhHHHHHHHHh-------hhc----------------ccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1053 RPEWVVDATFDLFD-------KLC----------------ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1053 ~~~~v~~~~~~~~~-------~l~----------------~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
.. .+++.+.+. .+. ........|++++||++|. |+++|+++|.+
T Consensus 187 ~~---~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~----------gi~~l~~~i~~ 253 (262)
T 1yrb_A 187 EE---KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTRE----------GFEDLETLAYE 253 (262)
T ss_dssp HH---HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCT----------THHHHHHHHHH
T ss_pred cc---HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcc----------cHHHHHHHHHH
Confidence 21 111111111 100 0011112478999999998 99999999988
Q ss_pred hcC
Q psy1758 1110 YVP 1112 (1527)
Q Consensus 1110 ~lp 1112 (1527)
.++
T Consensus 254 ~~~ 256 (262)
T 1yrb_A 254 HYC 256 (262)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=98.85 E-value=2.4e-09 Score=127.22 Aligned_cols=127 Identities=9% Similarity=0.045 Sum_probs=88.2
Q ss_pred EEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCC-----------cHHHHHHHHHHHH----cC
Q psy1758 104 QHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-----------MPQTREAIAHAKI----SG 168 (1527)
Q Consensus 104 ~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-----------~~qt~e~i~~~~~----~~ 168 (1527)
..+....+..++..+.+|||+||+.|...+..+++.++++|+|+|+++.. ...+..++..+.. .+
T Consensus 181 ~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~ 260 (353)
T 1cip_A 181 TGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 260 (353)
T ss_dssp CSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTT
T ss_pred eceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccC
Confidence 33445567778889999999999999999999999999999999999721 2344444444432 47
Q ss_pred CCEEEEEEcccCCcc------------------hhHHHHHHHhhh--cccccccCCCCcEEEeeccCCCChhHHHHHHHH
Q psy1758 169 VPLIVAINKIDKLDI------------------NLDRIKQDLISE--QVIPEEYGGASPFISISAKTGVGINKLLENISL 228 (1527)
Q Consensus 169 vpiIvviNKiDl~~~------------------~~~~~~~~l~~~--~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~ 228 (1527)
+|+||++||+|+... +.++....+... ..........++++++||++|.||.++|+++..
T Consensus 261 ~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~ 340 (353)
T 1cip_A 261 TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD 340 (353)
T ss_dssp SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence 899999999998531 112222211111 000000123468999999999999999999975
Q ss_pred HH
Q psy1758 229 QA 230 (1527)
Q Consensus 229 ~~ 230 (1527)
..
T Consensus 341 ~i 342 (353)
T 1cip_A 341 VI 342 (353)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-09 Score=134.50 Aligned_cols=176 Identities=16% Similarity=0.131 Sum_probs=98.0
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccc-cccccc-----eecch-hhhhcccceeEeeeeE-------------E
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRK-NQNINA-----RIMDS-NEIEKERGITIFSKNC-------------S 979 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~-~~~~~~-----~~~D~-~~~E~erGiTi~~~~~-------------~ 979 (1527)
.+.++|+|+|++|+|||||+++|......-.+ ...+.. ...|. .......|+++..... .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999854211000 000000 00011 1112233454433211 1
Q ss_pred EEecCeEEEEEeCCCCCC----chHHHHHHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCCCC
Q psy1758 980 IEYNGTRINIIDTPGHAD----FGGEVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNA 1052 (1527)
Q Consensus 980 ~~~~~~~iniiDTPGh~d----f~~ev~~~l~--~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~~a 1052 (1527)
+.|+++.+.||||||... +..++..... .+|.+++||||..|.. ....+....+ .+|+ ++|+||+|...
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlNK~D~~~- 254 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVTKLDGHA- 254 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEECTTSCC-
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEeCCcccc-
Confidence 234788999999999764 3444443332 7899999999998753 2222333322 2675 89999999863
Q ss_pred ChhhhHHHHHHHHhh----h--ccccc--ccCCcEEEeccccCCcCCCcccccCC-ChhHHHHHHhh
Q psy1758 1053 RPEWVVDATFDLFDK----L--CATEE--QLDFPVIYTSALHGYANENSKARQGN-MIPLFEAILKY 1110 (1527)
Q Consensus 1053 ~~~~v~~~~~~~~~~----l--~~~~~--~~~~pvi~~SA~~g~~~~~~~~~~~g-i~~Ll~~i~~~ 1110 (1527)
+....++ +...+.. + +.... ....|..++|++.|. | +..|++.+.+.
T Consensus 255 ~~g~~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~----------Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 255 KGGGALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGM----------GDIEGLIDKVNEL 310 (504)
T ss_dssp CCTHHHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTT----------TTTTTTHHHHTTT
T ss_pred chHHHHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCC----------CcHHHHHHHHHHH
Confidence 3333333 2222210 0 00000 001245667888886 7 89999999765
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=98.82 E-value=9e-09 Score=122.81 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=57.1
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEE---------------------
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE--------------------- 981 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~--------------------- 981 (1527)
.+|+|+|++|+|||||+++|++....+... ++.|+.+..+.+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~----------------p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~ 65 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANY----------------PFATIDKNVGVVPLEDERLYALQRTFAKGERVPP 65 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSC----------------CGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCC----------------CCceeccceeeEecChHHHHHHHHHhcccccccc
Confidence 469999999999999999998763211111 1112222222221
Q ss_pred ecCeEEEEEeCCCCCCc-------hHHHHHHHHhcCEEEEEEeCCC
Q psy1758 982 YNGTRINIIDTPGHADF-------GGEVERILSMVDNVLLLIDAVE 1020 (1527)
Q Consensus 982 ~~~~~iniiDTPGh~df-------~~ev~~~l~~aD~ailVVDa~~ 1020 (1527)
+.+..++||||||+.++ .......++.+|++++|+|+++
T Consensus 66 ~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 66 VVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp EECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 23568999999998765 3456677899999999999986
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-09 Score=127.60 Aligned_cols=134 Identities=21% Similarity=0.199 Sum_probs=92.3
Q ss_pred HHHHHHHccccc-cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCC-cHHH-HHH
Q psy1758 84 SLLDYIRKTNVV-FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQT-REA 160 (1527)
Q Consensus 84 SLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-~~qt-~e~ 160 (1527)
+|+.++....|. ..+.+++..++. ..+..+ .++.+||| |++|..++..+++.+|++|+|+|+++.. .... ..+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~-~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~ 107 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDET-GSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKF 107 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCS-SSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCC-CeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHH
Confidence 677777777776 556666653332 222222 37999999 9999999999999999999999999854 3332 233
Q ss_pred HHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHH
Q psy1758 161 IAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227 (1527)
Q Consensus 161 i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~ 227 (1527)
+..+...++|+++|+||+|+.+.........+... +....+++++||++|.|++++|+.+.
T Consensus 108 l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~------~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 108 LVLAEKNELETVMVINKMDLYDEDDLRKVRELEEI------YSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHH------HTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHH------HhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 34455578999999999999763221111111111 11005899999999999999998774
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-09 Score=128.14 Aligned_cols=115 Identities=19% Similarity=0.244 Sum_probs=67.6
Q ss_pred EecCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCCh--hhhH
Q psy1758 981 EYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARP--EWVV 1058 (1527)
Q Consensus 981 ~~~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~--~~v~ 1058 (1527)
.+.++.+.||||||..+-.. .....+|.+++|+|+..+...+. +.... ..++.++++||+|+..... ....
T Consensus 144 ~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 144 EAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp HHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECCSTTCCHHHHHHHH
T ss_pred hcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEEEEEchhccCchhHHHHHH
Confidence 34688999999999865332 23578999999999875422110 00001 1346788899999743211 1112
Q ss_pred HHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1059 DATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1059 ~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+++...+..+.........|++++||++|. |++.|++.|.+..+
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~----------gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGK----------GLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTB----------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 222222211111000112478999999998 99999999887664
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=9.3e-09 Score=122.60 Aligned_cols=126 Identities=13% Similarity=0.108 Sum_probs=78.8
Q ss_pred EEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCC-----------cHHHHHHHHHHHH----cCC
Q psy1758 105 HIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-----------MPQTREAIAHAKI----SGV 169 (1527)
Q Consensus 105 ~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-----------~~qt~e~i~~~~~----~~v 169 (1527)
.+....+..++..+.+|||||++.|...+..+++.++++|+|+|+++-. ......++..+.. .++
T Consensus 190 Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~ 269 (362)
T 1zcb_A 190 GIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNV 269 (362)
T ss_dssp SEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred ceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCC
Confidence 3444566778889999999999999999999999999999999999721 2233334443322 468
Q ss_pred CEEEEEEcccCCcc-------------------hhHHHHHHHhhhc-cccccc-CCCCcEEEeeccCCCChhHHHHHHHH
Q psy1758 170 PLIVAINKIDKLDI-------------------NLDRIKQDLISEQ-VIPEEY-GGASPFISISAKTGVGINKLLENISL 228 (1527)
Q Consensus 170 piIvviNKiDl~~~-------------------~~~~~~~~l~~~~-~~~~~~-~~~~~v~~iSAktg~gI~eL~~~l~~ 228 (1527)
|+|+++||+|+... +.++....+.... ...... ...+.++++||+++.||+++|+++..
T Consensus 270 piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~ 349 (362)
T 1zcb_A 270 SIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD 349 (362)
T ss_dssp EEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence 99999999998531 1112211111100 000100 23467899999999999999999975
Q ss_pred HH
Q psy1758 229 QA 230 (1527)
Q Consensus 229 ~~ 230 (1527)
..
T Consensus 350 ~i 351 (362)
T 1zcb_A 350 TI 351 (362)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-08 Score=120.87 Aligned_cols=157 Identities=21% Similarity=0.211 Sum_probs=87.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHc------ccc-ccccCCce-----------------eEEEEEEE------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRK------TNV-VFSEAGGI-----------------TQHIGAYN------------ 110 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~------~~~-~~~~~~gi-----------------T~~~~~~~------------ 110 (1527)
.++..|+|+|++|+|||||++.|.+ ..+ ..+..++. .++...+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4567899999999999999999973 222 11111100 01111111
Q ss_pred ----------EEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccC
Q psy1758 111 ----------VVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK 180 (1527)
Q Consensus 111 ----------~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl 180 (1527)
+...+..+.|+||||...-.. .....+|.+++|+|+..+...+. +.. .....|.++++||+|+
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~---i~~-~i~~~~~ivvlNK~Dl 205 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG---IKK-GIFELADMIAVNKADD 205 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC---------CCT-THHHHCSEEEEECCST
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH---HHH-HHhccccEEEEEchhc
Confidence 123567899999999432111 12368899999999865321111 000 0012466788899997
Q ss_pred Ccchh--HHHHHHHhhhcccccc--cCCCCcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 181 LDINL--DRIKQDLISEQVIPEE--YGGASPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 181 ~~~~~--~~~~~~l~~~~~~~~~--~~~~~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
..... ....+.+......... .....+++++||++|.|+++|++.|....
T Consensus 206 ~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 206 GDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 54211 1112222211111110 00124799999999999999999997653
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.7e-08 Score=115.37 Aligned_cols=124 Identities=12% Similarity=0.092 Sum_probs=85.3
Q ss_pred EEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCC-------CCC----cHHHHHHHHHHHH----cCCC
Q psy1758 106 IGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAAD-------DGV----MPQTREAIAHAKI----SGVP 170 (1527)
Q Consensus 106 ~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~-------~g~----~~qt~e~i~~~~~----~~vp 170 (1527)
+....+..++.++.+|||+||+.|...+..+++.++++|+|+|.+ +.. ...+...+..+.. .++|
T Consensus 157 i~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~ 236 (327)
T 3ohm_A 157 IIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS 236 (327)
T ss_dssp EEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCE
T ss_pred EEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCce
Confidence 455667778889999999999999999999999999999999876 211 2234444444432 4689
Q ss_pred EEEEEEcccCCcc-------------------hhHHHHHHHhhhcc-cccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 171 LIVAINKIDKLDI-------------------NLDRIKQDLISEQV-IPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 171 iIvviNKiDl~~~-------------------~~~~~~~~l~~~~~-~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
+++++||+|+... +.++....+..... ....-...+.++++||+++.||+.+|+.+...
T Consensus 237 iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 237 VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT 315 (327)
T ss_dssp EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence 9999999998642 11222211111100 00011233578899999999999999999754
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.1e-08 Score=120.04 Aligned_cols=164 Identities=17% Similarity=0.178 Sum_probs=74.3
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCchH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADFGG 1000 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df~~ 1000 (1527)
.+|+|+|++|+|||||+++|++........+.. ..+. ...+.+......+...+ ..+++|||||..++..
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~---~~~~-----~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~ 103 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGP---SHRI-----KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD 103 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSC---C----------CCEEEEEECC------CEEEEEEECC-------
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCc---ccCC-----ccceeeeeEEEEEecCCcccceeeeechhhhhhcc
Confidence 468999999999999999998653211111000 0000 00011111111111122 3689999999877532
Q ss_pred ------HH--------HHHH-------------HhcCEEEEEEeCC-CCCChhHHHHHHHHHHcCCccEEEEeccCCCCC
Q psy1758 1001 ------EV--------ERIL-------------SMVDNVLLLIDAV-EGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA 1052 (1527)
Q Consensus 1001 ------ev--------~~~l-------------~~aD~ailVVDa~-~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a 1052 (1527)
.+ ..++ ..++++|++++++ .+..+....++..+. .++|+|+|+||+|+...
T Consensus 104 ~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 104 NSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp ----CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-TTSEEEEEEESTTSSCH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-ccCcEEEEEEcccCccH
Confidence 11 1111 1244577777776 688887766666554 48999999999998642
Q ss_pred C-hhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1053 R-PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1053 ~-~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+ .....+++.+.+.. ..++++.+||+++. ++..++..+.+.+|
T Consensus 183 ~ev~~~k~~i~~~~~~-------~~i~~~~~sa~~~~----------~v~~~~~~l~~~iP 226 (418)
T 2qag_C 183 EECQQFKKQIMKEIQE-------HKIKIYEFPETDDE----------EENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHHHH-------HTCCCCCCC---------------------------CC
T ss_pred HHHHHHHHHHHHHHHH-------cCCeEEeCCCCCCc----------CHHHHHHHHHhhCC
Confidence 1 11111233332221 24568889999886 66667777665554
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=5e-08 Score=113.82 Aligned_cols=163 Identities=18% Similarity=0.257 Sum_probs=76.9
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCC-----
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGH----- 995 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh----- 995 (1527)
.+|+++|+.|+|||||+++|.... .....+ +. .+..+.. +++.+......+... ...+++|||||+
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~-~~~~~g-i~---~~g~~~~--~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~ 91 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTD-LYPERV-IS---GAAEKIE--RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAIN 91 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-------------------------------CEEEEC---CCEEEEEEEEC-------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC-ccCCCC-cc---cCCcccC--CcceEeeEEEEecCCCcccCcchhhhhhhhhhcC
Confidence 578999999999999999987531 111111 00 0000000 011111111112212 357899999998
Q ss_pred --CCchHHHH-------HHHHhc-------------CEEEEEEeCCC-CCChhHHHHHHHHHHcCCccEEEEeccCCCCC
Q psy1758 996 --ADFGGEVE-------RILSMV-------------DNVLLLIDAVE-GPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA 1052 (1527)
Q Consensus 996 --~df~~ev~-------~~l~~a-------------D~ailVVDa~~-G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a 1052 (1527)
..|...+. ..++.+ ++++++++.+. |..+.....++.+. .+.|+++|+||.|+...
T Consensus 92 ~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 92 CRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTL 170 (301)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCH
Confidence 44443333 444433 33666666554 57776655554443 36789999999998652
Q ss_pred Ch-hhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1053 RP-EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1053 ~~-~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+. ....+++.+... ...++++.+||++| |++++++.+.+.+
T Consensus 171 ~e~~~~~~~~~~~~~-------~~~~~~~e~Sa~~~-----------~v~e~f~~l~~~i 212 (301)
T 2qnr_A 171 KERERLKKRILDEIE-------EHNIKIYHLPDAES-----------DEDEDFKEQTRLL 212 (301)
T ss_dssp HHHHHHHHHHHHHHH-------HTTCCCCCCC--------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HcCCeEEecCCccc-----------cccHHHHHHHHHh
Confidence 21 111223333222 12457899999998 4556666665555
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=98.61 E-value=4.7e-08 Score=120.91 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=89.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHH------ccccc-ccc---CC-------------ceeEEEEEE-------------E
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIR------KTNVV-FSE---AG-------------GITQHIGAY-------------N 110 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~------~~~~~-~~~---~~-------------giT~~~~~~-------------~ 110 (1527)
.++.+|+++|++|+|||||+++|. +.++. +.. .+ ++....... .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345689999999999999999997 33221 100 00 111100000 0
Q ss_pred EEeCCeEEEEEeCCChh----hHHHHHHhh--ccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCE-EEEEEcccCCcc
Q psy1758 111 VVTNHGSITFLDTPGHE----AFTAMRARG--AKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPL-IVAINKIDKLDI 183 (1527)
Q Consensus 111 ~~~~~~~i~~iDTPG~e----~f~~~~~~~--~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpi-IvviNKiDl~~~ 183 (1527)
+.+.+..+.||||||.. .+....... +..+|.+++|+|+..+.. ....+..+... +|+ ++|+||+|....
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHAK 255 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCCC
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCccccc
Confidence 01256789999999953 232222211 237899999999998753 23333333332 785 899999998642
Q ss_pred hhHHHHHHHhhhcc---------cccccCCCCcEEEeeccCCCC-hhHHHHHHH
Q psy1758 184 NLDRIKQDLISEQV---------IPEEYGGASPFISISAKTGVG-INKLLENIS 227 (1527)
Q Consensus 184 ~~~~~~~~l~~~~~---------~~~~~~~~~~v~~iSAktg~g-I~eL~~~l~ 227 (1527)
. ............ ....+..+.|.+.+|+.+|.| +++|++.+.
T Consensus 256 ~-g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~ 308 (504)
T 2j37_W 256 G-GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVN 308 (504)
T ss_dssp C-THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHT
T ss_pred h-HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHH
Confidence 2 111111111100 011112234667789999999 999999885
|
| >3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.5e-08 Score=107.34 Aligned_cols=85 Identities=28% Similarity=0.447 Sum_probs=70.0
Q ss_pred CCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--e
Q psy1758 1118 SNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--T 1195 (1527)
Q Consensus 1118 ~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~ 1195 (1527)
.++||+|+|.+++. +.|++..|||.+|++++||.|.++|. + ...+|.+|+.+. .++++|.|||+|++ .
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~--~--~~~~V~~I~~~~----~~~~~A~aGd~V~l~L~ 72 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPN--K--HNVEVLGILSDD----VETDTVAPGENLKIRLK 72 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTT--T--EEEEEEEECSSS----SCBSEECTTSEEEEEEE
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCC--C--CEEEEEEEEECC----EEeEEECCCCEEEEEEc
Confidence 47899999999965 68999999999999999999999876 3 467899987764 57999999999987 7
Q ss_pred cce--ecccCCeeeCCCCC
Q psy1758 1196 GIE--EICIGSTICDPSKP 1212 (1527)
Q Consensus 1196 gl~--~~~iGdTi~~~~~~ 1212 (1527)
|++ ++..||+||+++++
T Consensus 73 gi~~~di~rG~vl~~~~~~ 91 (204)
T 3e1y_E 73 GIEEEEILPGFILCDPNNL 91 (204)
T ss_dssp ESSSSCCCTTCEEBCSSSC
T ss_pred CCCHHHCccceEEECCCCC
Confidence 775 68889999998764
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=4.1e-08 Score=117.91 Aligned_cols=125 Identities=11% Similarity=0.050 Sum_probs=83.4
Q ss_pred EEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCC----------CC-cHHHHHHHHHHHH----cCC
Q psy1758 105 HIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADD----------GV-MPQTREAIAHAKI----SGV 169 (1527)
Q Consensus 105 ~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~----------g~-~~qt~e~i~~~~~----~~v 169 (1527)
.+....+..++..+.+|||+|++.|...+..+++.++++|+|+|+++ .- ...+..++..+.. .++
T Consensus 206 Gi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~ 285 (402)
T 1azs_C 206 GIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTI 285 (402)
T ss_dssp SEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSC
T ss_pred eeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCC
Confidence 33445667788899999999999999999999999999999999997 11 2233344444332 368
Q ss_pred CEEEEEEcccCCcchhH--------------------------------HHHHHHhhhccccc-----ccCCCCcEEEee
Q psy1758 170 PLIVAINKIDKLDINLD--------------------------------RIKQDLISEQVIPE-----EYGGASPFISIS 212 (1527)
Q Consensus 170 piIvviNKiDl~~~~~~--------------------------------~~~~~l~~~~~~~~-----~~~~~~~v~~iS 212 (1527)
|++||+||+|+...... .............. .-...+.++++|
T Consensus 286 piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TS 365 (402)
T 1azs_C 286 SVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTC 365 (402)
T ss_dssp CEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECC
T ss_pred eEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEE
Confidence 99999999998532110 00000000000000 001235678999
Q ss_pred ccCCCChhHHHHHHHHH
Q psy1758 213 AKTGVGINKLLENISLQ 229 (1527)
Q Consensus 213 Aktg~gI~eL~~~l~~~ 229 (1527)
|+++.||+++|+.+...
T Consensus 366 A~d~~nV~~vF~~v~~~ 382 (402)
T 1azs_C 366 AVDTENIRRVFNDCRDI 382 (402)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred eecCcCHHHHHHHHHHH
Confidence 99999999999998643
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.5e-08 Score=118.10 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=54.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC-----------------eEEEEEeCCChhhH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH-----------------GSITFLDTPGHEAF 129 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~-----------------~~i~~iDTPG~e~f 129 (1527)
..+.+|+++|.+|+|||||+|+|++..+..+..+++|++.....+.+.+ ..+.||||||...+
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 4567899999999999999999999888778888999888777776654 24999999998776
Q ss_pred HH-------HHHhhccccCEEEEEEeCCC
Q psy1758 130 TA-------MRARGAKVTDIVVLVVAADD 151 (1527)
Q Consensus 130 ~~-------~~~~~~~~aD~~IlVvda~~ 151 (1527)
.. ....+++.+|++++|+|+.+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 54 34567789999999999986
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.1e-08 Score=119.10 Aligned_cols=116 Identities=11% Similarity=0.097 Sum_probs=75.9
Q ss_pred CeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCC----------CC-CcHHHHHHHHHHHH----cCCCEEEEEEccc
Q psy1758 115 HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAAD----------DG-VMPQTREAIAHAKI----SGVPLIVAINKID 179 (1527)
Q Consensus 115 ~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~----------~g-~~~qt~e~i~~~~~----~~vpiIvviNKiD 179 (1527)
...+.+|||+|++.|..++..+++.++++|+|+|.+ +. -...+...+..+.. .++|++||+||+|
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~D 261 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHH
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcc
Confidence 357999999999999999999999999999999997 21 12333444444332 4689999999999
Q ss_pred CCcchh------------------------HHHHHHHhhhcc-c------ccccCCCCcEEEeeccCCCChhHHHHHHHH
Q psy1758 180 KLDINL------------------------DRIKQDLISEQV-I------PEEYGGASPFISISAKTGVGINKLLENISL 228 (1527)
Q Consensus 180 l~~~~~------------------------~~~~~~l~~~~~-~------~~~~~~~~~v~~iSAktg~gI~eL~~~l~~ 228 (1527)
+..... ++.......... . .........++++||+++.||+++|+.+..
T Consensus 262 L~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~ 341 (354)
T 2xtz_A 262 IFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDE 341 (354)
T ss_dssp HHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHH
Confidence 853211 001000010000 0 000012345789999999999999999975
Q ss_pred HH
Q psy1758 229 QA 230 (1527)
Q Consensus 229 ~~ 230 (1527)
..
T Consensus 342 ~I 343 (354)
T 2xtz_A 342 TL 343 (354)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=98.54 E-value=4.1e-08 Score=116.68 Aligned_cols=133 Identities=14% Similarity=0.100 Sum_probs=96.4
Q ss_pred cceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC-----------CChhHHHHHHHHHH--
Q psy1758 969 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-----------PMPQTRFVTRKALK-- 1035 (1527)
Q Consensus 969 rGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G-----------~~~qt~~~~~~~~~-- 1035 (1527)
+..|+......+.+++..+.||||+|+..|...+..+++.++++|+|+|.++- -+......|.....
T Consensus 177 ~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~ 256 (353)
T 1cip_A 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256 (353)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred cCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc
Confidence 34455555567888899999999999999999999999999999999999862 12334444554443
Q ss_pred --cCCccEEEEeccCCCC------------------CChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc
Q psy1758 1036 --LGFKPIVVVNKIDRSN------------------ARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA 1095 (1527)
Q Consensus 1036 --~glp~IvviNKiD~~~------------------a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~ 1095 (1527)
.+.|+|+|.||+|+.. .+.++..+.+...|..+........++++.+||++|.
T Consensus 257 ~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~------- 329 (353)
T 1cip_A 257 WFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTK------- 329 (353)
T ss_dssp GGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHH-------
T ss_pred cccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCch-------
Confidence 3689999999999842 2344444445555544433212345678999999998
Q ss_pred ccCCChhHHHHHHhhc
Q psy1758 1096 RQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1096 ~~~gi~~Ll~~i~~~l 1111 (1527)
|+..+|+++.+.+
T Consensus 330 ---nV~~vF~~v~~~i 342 (353)
T 1cip_A 330 ---NVQFVFDAVTDVI 342 (353)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHH
Confidence 8999999887765
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=8.3e-08 Score=106.66 Aligned_cols=168 Identities=18% Similarity=0.201 Sum_probs=91.6
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccc---eecchhhhhcc--cceeEeee-eEE------------EEe
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA---RIMDSNEIEKE--RGITIFSK-NCS------------IEY 982 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~---~~~D~~~~E~e--rGiTi~~~-~~~------------~~~ 982 (1527)
+.++|+|+|++|+|||||+++|+.....-.+...+.. ...|....+.. .-+.+... ... +.+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4579999999999999999999976321111111110 01122112111 11111100 000 011
Q ss_pred cCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHH
Q psy1758 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATF 1062 (1527)
Q Consensus 983 ~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~ 1062 (1527)
.+..+.++||||....... .-...+..+.|+|+..+...... .....+.|.++|+||+|+.+.+ +...+++.
T Consensus 117 ~~~d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~~~~-~~~~~~~~ 188 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLADAV-GADIKKME 188 (226)
T ss_dssp GGCSEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGHHHH-TCCHHHHH
T ss_pred CCCCEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccCchh-HHHHHHHH
Confidence 2347899999995321110 01234677888997654322211 1122478999999999985321 01123333
Q ss_pred HHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1063 DLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1063 ~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..+..+. ...|++++||++|. |+++|++.+.+.+
T Consensus 189 ~~~~~~~-----~~~~~~~~Sa~~g~----------gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 189 NDAKRIN-----PDAEVVLLSLKTME----------GFDKVLEFIEKSV 222 (226)
T ss_dssp HHHHHHC-----TTSEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred HHHHHhC-----CCCeEEEEEecCCC----------CHHHHHHHHHHHH
Confidence 3332221 13579999999998 9999999987765
|
| >2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-07 Score=115.09 Aligned_cols=97 Identities=24% Similarity=0.238 Sum_probs=84.0
Q ss_pred CCCcEEEEEEEECccccCCCCcccEEeecCCCCCCHHHHHHHHHhccc-cccccCccccccccCChhhHHHHhcCCcccc
Q psy1758 722 EADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHG-KISQIPPMYSALKYKGIPLYKYARSGITIKR 800 (1527)
Q Consensus 722 ~~~K~Y~~~~~~G~~tdt~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g-~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~ 800 (1527)
...|+|+|.+.+. .+++.++++++.. |.| .|.|.||.-++.+ +..
T Consensus 410 ~~~K~Y~alv~~~------------------~~v~~e~l~~~~~-l~~l~I~QrtP~RV~hR---------------R~~ 455 (530)
T 2v9k_A 410 EKTKTYSALIWTN------------------KAIQKKDIEFLND-IKDLKIDQKTPLRVLHR---------------RPL 455 (530)
T ss_dssp HCCEEEEEEEEES------------------SCCCHHHHGGGGG-CCSEEEEEECCGGGTTT---------------SCC
T ss_pred cCCeEEEEEEEEc------------------CCCCHHHHHHHHh-cCCceeeccCCeEEEEe---------------cCC
Confidence 5689999999973 2467899987766 999 9999999999941 223
Q ss_pred cceeEEEEEEEEEEEeCCeEEEEEEecccccHHHHHH-H-------HHHHhCChhhhHHH
Q psy1758 801 KLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSE-D-------IGKMLGCGAHLKYL 852 (1527)
Q Consensus 801 ~~r~~~i~~~~~~~~~~~~~~~~v~cs~gtYirsl~~-d-------ig~~l~~~a~~~~L 852 (1527)
..|..+||++++...+...|.|++.|+.|||||-|+| | ||..||++|+|.+|
T Consensus 456 ~~R~R~I~~i~~~~~~~~~~~l~i~~eaGtYIKelvhGD~GRT~Psl~~lLg~~a~i~eL 515 (530)
T 2v9k_A 456 AVRARVIHFMETQYVDEHHFRLHLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADILEL 515 (530)
T ss_dssp CEEEEEEEEEEEEEEETTEEEEEEEECTTCCHHHHHHCTTTTEESCHHHHHTSCEEEEEE
T ss_pred CccceEEEEEEEEEecCCEEEEEEEecCCCEEEEEEcCCCCCcCCcHHHHhCCCcEEEEe
Confidence 3499999999999999999999999999999999999 7 99999999988765
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-07 Score=112.97 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=85.9
Q ss_pred ceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC-----------CChhHHHHHHHHHH---
Q psy1758 970 GITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-----------PMPQTRFVTRKALK--- 1035 (1527)
Q Consensus 970 GiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G-----------~~~qt~~~~~~~~~--- 1035 (1527)
..|+......+.+++..+.||||||+..|...+..++..++++|+|+|.++- -+......|.....
T Consensus 186 ~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~ 265 (362)
T 1zcb_A 186 RPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV 265 (362)
T ss_dssp CCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh
Confidence 3344444567888899999999999999999888889999999999999872 12233444544443
Q ss_pred -cCCccEEEEeccCCCC-------------------CChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc
Q psy1758 1036 -LGFKPIVVVNKIDRSN-------------------ARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA 1095 (1527)
Q Consensus 1036 -~glp~IvviNKiD~~~-------------------a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~ 1095 (1527)
.+.|+|+|+||+|+.. .+.++..+.+...|..+........++++++||++|.
T Consensus 266 ~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~------- 338 (362)
T 1zcb_A 266 FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTE------- 338 (362)
T ss_dssp GTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHH-------
T ss_pred hCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCch-------
Confidence 3689999999999742 2334444444444444433111335678999999998
Q ss_pred ccCCChhHHHHHHhhc
Q psy1758 1096 RQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1096 ~~~gi~~Ll~~i~~~l 1111 (1527)
|+..+|+++.+.+
T Consensus 339 ---nV~~vF~~v~~~i 351 (362)
T 1zcb_A 339 ---NIRLVFRDVKDTI 351 (362)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHH
Confidence 8999998887654
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.41 E-value=1e-08 Score=123.06 Aligned_cols=112 Identities=14% Similarity=0.104 Sum_probs=75.6
Q ss_pred CCEEEEEecCCCChhHHHHHHHcc------ccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH-------HHHHh
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKT------NVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT-------AMRAR 135 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~------~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~-------~~~~~ 135 (1527)
..+|+++|.+|+|||||+|+|.+. ....+..+|+|++...+.+ + ..+.++||||-.... .....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~-~~~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL--E-SGATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC--S-TTCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe--C-CCeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 457999999999999999999886 4567788899988766543 2 238999999932111 01111
Q ss_pred hc---cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcc
Q psy1758 136 GA---KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDI 183 (1527)
Q Consensus 136 ~~---~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~ 183 (1527)
.+ ...|.+++++++...........+..+...+.|+++++||+|....
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHR 289 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEE
T ss_pred HHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCccccc
Confidence 12 6679999999985321111111122334457899999999998753
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.5e-08 Score=121.38 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=71.3
Q ss_pred CCEEEEEecCCCChhHHHHHHHcc-------ccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhh-------HHH-HH
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKT-------NVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEA-------FTA-MR 133 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~-------~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~-------f~~-~~ 133 (1527)
..+|+++|.+|+|||||+|+|.+. ....+..+|+|.+...+.+ .. .+.++||||-.. +.. ..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~~-~~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL--DE-ESSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES--SS-SCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe--cC-CeEEEeCCCcCcHHHHHHHhhHHHH
Confidence 467999999999999999999875 2346778899987766543 22 389999999321 111 11
Q ss_pred Hhh--ccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch
Q psy1758 134 ARG--AKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN 184 (1527)
Q Consensus 134 ~~~--~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~ 184 (1527)
... ....+.+++++++...........+..+...+.|+++++||+|.....
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEE
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccc
Confidence 111 366788999998853211111111222344578999999999987643
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=9e-07 Score=106.80 Aligned_cols=144 Identities=14% Similarity=0.170 Sum_probs=80.0
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df 998 (1527)
.+.+++|+|++|+|||||++.|++.. +... . + ....++.+.......+...+ ..++++|+||..+.
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~--l~g~-~----~-----~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~ 108 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTK--FEGE-P----A-----THTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQ 108 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSC--C-----------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCcc--ccCC-c----C-----CCCCccceEeeEEEEeecCccccccchhhhhhhhhc
Confidence 44679999999999999999998652 1000 0 0 00012223221111122222 26899999997653
Q ss_pred h--------------HHHHHHHHh---------------cC-EEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccC
Q psy1758 999 G--------------GEVERILSM---------------VD-NVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKID 1048 (1527)
Q Consensus 999 ~--------------~ev~~~l~~---------------aD-~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD 1048 (1527)
. ..+..++.. +| ++++++|+.++..+....+++.+. .+.|+|+|+||+|
T Consensus 109 ~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD 187 (427)
T 2qag_B 109 INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKAD 187 (427)
T ss_dssp CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGG
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchh
Confidence 1 112222211 12 477788999998888877766665 7899999999999
Q ss_pred CCCCChhhhHHHHHHHHhh-hcccccccCCcEEEecc
Q psy1758 1049 RSNARPEWVVDATFDLFDK-LCATEEQLDFPVIYTSA 1084 (1527)
Q Consensus 1049 ~~~a~~~~v~~~~~~~~~~-l~~~~~~~~~pvi~~SA 1084 (1527)
.... .+ +..+...+.. +.. .+++++++|.
T Consensus 188 ~Lt~--~E-~~~l~~~I~~~L~~----~gi~I~~is~ 217 (427)
T 2qag_B 188 AISK--SE-LTKFKIKITSELVS----NGVQIYQFPT 217 (427)
T ss_dssp GSCH--HH-HHHHHHHHHHHHBT----TBCCCCCCC-
T ss_pred ccch--HH-HHHHHHHHHHHHHH----cCCcEEecCC
Confidence 8642 22 2333333322 322 2457788874
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=4.1e-07 Score=108.89 Aligned_cols=82 Identities=21% Similarity=0.236 Sum_probs=51.6
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC-----------------e
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-----------------T 985 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-----------------~ 985 (1527)
.+|+|+|.+|+|||||+++|+.... .....+++|+.+....+.+.+ .
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~----------------~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~ 86 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQA----------------SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPA 86 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-----------------------------CCSEEEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc----------------cccCCCccccCceeEEEEECCccceeeccccCccccccc
Confidence 5799999999999999999986521 112334566666666665543 3
Q ss_pred EEEEEeCCCCCCchH-------HHHHHHHhcCEEEEEEeCCC
Q psy1758 986 RINIIDTPGHADFGG-------EVERILSMVDNVLLLIDAVE 1020 (1527)
Q Consensus 986 ~iniiDTPGh~df~~-------ev~~~l~~aD~ailVVDa~~ 1020 (1527)
.+.+|||||+..+.. .+...++.+|++++|||+++
T Consensus 87 ~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 87 FLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp EEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 599999999887554 56677899999999999975
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.23 E-value=9.8e-07 Score=105.88 Aligned_cols=86 Identities=19% Similarity=0.118 Sum_probs=70.2
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCC-----------------eEEEEEeCCCh-
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNH-----------------GSITFLDTPGH- 126 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~-----------------~~i~~iDTPG~- 126 (1527)
..++.+|+++|++|+|||||+|+|++... ..+..|++|++.....+...+ ..+.+|||||.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 34567999999999999999999999887 788889999988887777765 46899999993
Q ss_pred ------hhHHHHHHhhccccCEEEEEEeCCC
Q psy1758 127 ------EAFTAMRARGAKVTDIVVLVVAADD 151 (1527)
Q Consensus 127 ------e~f~~~~~~~~~~aD~~IlVvda~~ 151 (1527)
+.+.......++.+|.++.|+|+.+
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2233344556788999999999976
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.2e-06 Score=102.09 Aligned_cols=111 Identities=17% Similarity=0.264 Sum_probs=70.6
Q ss_pred EEEEecCCCChhHHHHHHHccccc----cccCCceeEEEEEEEEEeCC--eEEEEEeCCChhh-----------------
Q psy1758 72 VTIMGHVDHGKTSLLDYIRKTNVV----FSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEA----------------- 128 (1527)
Q Consensus 72 V~IvG~~~~GKTSLl~~L~~~~~~----~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~----------------- 128 (1527)
++|+|++|+|||||++.|.+..+. ....++.++....+.+...+ ..++++|+||...
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~ 124 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDA 124 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHH
Confidence 999999999999999999887532 11123445543333333333 2689999998321
Q ss_pred -HHHHHHhh--c-------ccc--C-EEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcc
Q psy1758 129 -FTAMRARG--A-------KVT--D-IVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDI 183 (1527)
Q Consensus 129 -f~~~~~~~--~-------~~a--D-~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~ 183 (1527)
|....... . ..+ | ++++++|+..+..+...+.++.+. .++|+|+|+||+|....
T Consensus 125 q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 125 QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccch
Confidence 11111111 1 122 3 467788888888888888888776 78999999999998763
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.3e-06 Score=92.38 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=89.5
Q ss_pred cCCCEEEEEecC-CCChhHHHHHHHccc--ccc---------ccCCceeEEEEE---EEE-E-e-------C--------
Q psy1758 67 VRAPIVTIMGHV-DHGKTSLLDYIRKTN--VVF---------SEAGGITQHIGA---YNV-V-T-------N-------- 114 (1527)
Q Consensus 67 ~r~~~V~IvG~~-~~GKTSLl~~L~~~~--~~~---------~~~~giT~~~~~---~~~-~-~-------~-------- 114 (1527)
...|++++.|+. ..=+.+|+.++.... +.+ +--+|++..+.. +++ + | +
T Consensus 14 ~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~~~~~~ 93 (227)
T 3l82_B 14 QNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAREEHTS 93 (227)
T ss_dssp CCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC--------------
T ss_pred CCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhhhhhhh
Confidence 456889999983 334458888886654 111 111244433221 111 0 0 0
Q ss_pred -CeEEEEEeCC------ChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHH----HHH----cCCCEEEEEEcc-
Q psy1758 115 -HGSITFLDTP------GHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAH----AKI----SGVPLIVAINKI- 178 (1527)
Q Consensus 115 -~~~i~~iDTP------G~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~----~~~----~~vpiIvviNKi- 178 (1527)
..++..--+| ||+.++.+|..|+..+|++|+|||++|.......+.+.. +.. .++|++|+.||.
T Consensus 94 ~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqq 173 (227)
T 3l82_B 94 AVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQ 173 (227)
T ss_dssp -----------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESS
T ss_pred hhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCc
Confidence 0134445566 799999999999999999999999998533234444422 111 478999999995
Q ss_pred cCCcc-hhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHHHHHH
Q psy1758 179 DKLDI-NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISL 228 (1527)
Q Consensus 179 Dl~~~-~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~ 228 (1527)
|++.+ +..++.+.+.-... ...+.+.+|||++|+|+.+-++||..
T Consensus 174 Dlp~Ams~~EI~e~L~L~~l-----~R~W~Iq~csA~TGeGL~EGLdWL~~ 219 (227)
T 3l82_B 174 GDVKRMPCFYLAHELHLNLL-----NHPWLVQDTEAETLTGFLNGIEWILE 219 (227)
T ss_dssp TTSCBCCHHHHHHHTTGGGG-----CSCEEEEEEETTTCTTHHHHHHHHTT
T ss_pred CccCCCCHHHHHHHcCCcCC-----CCCEEEEEeECCCCcCHHHHHHHHHH
Confidence 77654 33444444332221 23458999999999999999999963
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.14 E-value=3.1e-06 Score=103.16 Aligned_cols=125 Identities=18% Similarity=0.250 Sum_probs=69.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCccccccccc--------ceecchhh-hhcccceeEeeee------------EE
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--------ARIMDSNE-IEKERGITIFSKN------------CS 979 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--------~~~~D~~~-~E~erGiTi~~~~------------~~ 979 (1527)
..++|+++|++|+||||++..|...... ....+. ....+... .....|+.+.... .-
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~--~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l 175 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQK--RGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGM 175 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHH--HHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHH
Confidence 3468999999999999999999864210 000000 00000000 0011122211110 00
Q ss_pred EEecCeEEEEEeCCCCCCchHHHHHHH------HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCC-c-cEEEEeccCCC
Q psy1758 980 IEYNGTRINIIDTPGHADFGGEVERIL------SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGF-K-PIVVVNKIDRS 1050 (1527)
Q Consensus 980 ~~~~~~~iniiDTPGh~df~~ev~~~l------~~aD~ailVVDa~~G~~~qt~~~~~~~~~~gl-p-~IvviNKiD~~ 1050 (1527)
-.+.++.+.||||||...........+ ..+|.+++|+||..|. ........ ...++ | ..+|+||+|..
T Consensus 176 ~~~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~-~~~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 176 EKFKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKA-FKEAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp HTTSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHH-HHTTSCSCEEEEEECSSSC
T ss_pred HHhhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHH-HhhcccCCeEEEEeCCCCc
Confidence 012578899999999876544433332 2579999999998763 22222221 22346 7 67889999985
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.1e-05 Score=97.46 Aligned_cols=158 Identities=15% Similarity=0.168 Sum_probs=93.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccc----ccc-CCceeEEEEEEEEEeCC-eEEEEEeCCChh----hHHH-HHHh
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVV----FSE-AGGITQHIGAYNVVTNH-GSITFLDTPGHE----AFTA-MRAR 135 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~----~~~-~~giT~~~~~~~~~~~~-~~i~~iDTPG~e----~f~~-~~~~ 135 (1527)
.+...++++|++|+|||||+|.|.+.... ... ...+|+. .+.+.... ..++++|+||.. .... +...
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~--~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~ 144 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME--RHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKM 144 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC--CEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee--EEeccccccCCeeehHhhcccchHHHHHHHHHHc
Confidence 45668999999999999999999883211 100 0111221 11222222 268999999942 1211 2223
Q ss_pred hccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcc----------hhHHHHHHHhhhccc-ccccC-
Q psy1758 136 GAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDI----------NLDRIKQDLISEQVI-PEEYG- 203 (1527)
Q Consensus 136 ~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~----------~~~~~~~~l~~~~~~-~~~~~- 203 (1527)
++...|..++ +|... .+.|.......+...+.|+++|.||.|+.-. ...+....+...... ..+.+
T Consensus 145 ~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~ 222 (413)
T 1tq4_A 145 KFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI 222 (413)
T ss_dssp TGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4455566555 77654 4677777778787889999999999997521 112222222211000 00111
Q ss_pred CCCcEEEeec--cCCCChhHHHHHHHH
Q psy1758 204 GASPFISISA--KTGVGINKLLENISL 228 (1527)
Q Consensus 204 ~~~~v~~iSA--ktg~gI~eL~~~l~~ 228 (1527)
....+|.+|+ .++.|+++|.+.+..
T Consensus 223 ~~~~iiliSsh~l~~~~~e~L~d~I~~ 249 (413)
T 1tq4_A 223 AEPPIFLLSNKNVCHYDFPVLMDKLIS 249 (413)
T ss_dssp SSCCEEECCTTCTTSTTHHHHHHHHHH
T ss_pred CCCcEEEEecCcCCccCHHHHHHHHHH
Confidence 1236899999 677789999999964
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=4.8e-06 Score=95.34 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=72.2
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch---
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG--- 999 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~--- 999 (1527)
.+++|+|+.|+|||||++.|++..... .+.+.-.-.+.......++++.......+ ...++++|+||..+..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~--~G~i~~~g~~i~~~~~~~~i~~v~q~~~~---~~~ltv~d~~~~g~~~~~~ 77 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSR--KASSWNREEKIPKTVEIKAIGHVIEEGGV---KMKLTVIDTPGFGDQINNE 77 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC-------CCEEEEECCCC--CCSBCT
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCC--CCccccCCcccCcceeeeeeEEEeecCCC---cCCceEEechhhhhhcccH
Confidence 489999999999999999998752211 11110000000011112233322221111 1368999999965421
Q ss_pred ---HHHHH--------HH--------------HhcCEEEEEEeCC-CCCChhHHHHHHHHHHcCCccEEEEeccCCCCC
Q psy1758 1000 ---GEVER--------IL--------------SMVDNVLLLIDAV-EGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA 1052 (1527)
Q Consensus 1000 ---~ev~~--------~l--------------~~aD~ailVVDa~-~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a 1052 (1527)
..+.. .+ ..+.++++++|.. +|..+.....++.+.+. +++|+|+||+|....
T Consensus 78 ~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 78 NCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTL 155 (270)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCH
Confidence 11111 11 2258889999954 88999998888888776 999999999998653
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.3e-06 Score=102.65 Aligned_cols=133 Identities=16% Similarity=0.166 Sum_probs=93.7
Q ss_pred cceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCC-------C----CChhHHHHHHHHHH--
Q psy1758 969 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVE-------G----PMPQTRFVTRKALK-- 1035 (1527)
Q Consensus 969 rGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~-------G----~~~qt~~~~~~~~~-- 1035 (1527)
+..|+......+.+++..+.||||+|+..|...+..+++.++++|+|+|.++ . -+......|.....
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 5556666777888899999999999999999999999999999999999972 1 11233444544443
Q ss_pred --cCCccEEEEeccCCCC------------------CChhhhHHHHHHHH------hhhccccc----------ccCCcE
Q psy1758 1036 --LGFKPIVVVNKIDRSN------------------ARPEWVVDATFDLF------DKLCATEE----------QLDFPV 1079 (1527)
Q Consensus 1036 --~glp~IvviNKiD~~~------------------a~~~~v~~~~~~~~------~~l~~~~~----------~~~~pv 1079 (1527)
.++|+++|.||+|+.. .+.++..+.+...| ..+..... +..+.+
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~ 304 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT 304 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE
Confidence 3689999999999742 13445555566666 33322111 124678
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.++||+++. +++.+|+.+.+.+
T Consensus 305 h~TsA~dt~----------nv~~vF~~v~~~I 326 (340)
T 4fid_A 305 NPTNATDGS----------NIKRVFMLAVDVI 326 (340)
T ss_dssp EEECTTCHH----------HHHHHHHHHHHHH
T ss_pred EEEEeeCcH----------HHHHHHHHHHHHH
Confidence 899999987 8888887776654
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.9e-06 Score=100.94 Aligned_cols=132 Identities=15% Similarity=0.164 Sum_probs=96.3
Q ss_pred cceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCC-------CCC----ChhHHHHHHHHHH--
Q psy1758 969 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAV-------EGP----MPQTRFVTRKALK-- 1035 (1527)
Q Consensus 969 rGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~-------~G~----~~qt~~~~~~~~~-- 1035 (1527)
+..|+......+.+++.++.||||+|+..|...+..+++.++++|+|+|.+ +.. +......|.....
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 555666667788899999999999999999999999999999999999765 221 1223344444433
Q ss_pred --cCCccEEEEeccCCCC-------------------CChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcc
Q psy1758 1036 --LGFKPIVVVNKIDRSN-------------------ARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSK 1094 (1527)
Q Consensus 1036 --~glp~IvviNKiD~~~-------------------a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~ 1094 (1527)
.+.|+++|.||+|+.. .+.++..+-+...|..+.. .....+.+.++||+++.
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~-~~~~~i~~~~TsA~d~~------ 303 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNP-DSDKIIYSHFTCATDTE------ 303 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCT-TTTSCEEEEECCTTCHH------
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcc-cccCCcEEEEEEeecCH------
Confidence 3689999999999742 2445555566666655542 22345677889999998
Q ss_pred cccCCChhHHHHHHhhc
Q psy1758 1095 ARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1095 ~~~~gi~~Ll~~i~~~l 1111 (1527)
+++.+|+.+.+.+
T Consensus 304 ----nV~~vF~~v~~~I 316 (327)
T 3ohm_A 304 ----NIRFVFAAVKDTI 316 (327)
T ss_dssp ----HHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHH
Confidence 8888888887655
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.5e-05 Score=96.27 Aligned_cols=162 Identities=15% Similarity=0.189 Sum_probs=96.2
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhc----cCcccccccccceecchhhhhcccceeEeeeeEEEEecC-eEEEEEeCCCCC
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQ----SGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-TRINIIDTPGHA 996 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~----~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-~~iniiDTPGh~ 996 (1527)
...++|+|++|+|||||++.|++. .|.+.-.+ .+..+ +|+ .+.... ..++++|+||..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g---------~~~t~-~~~-------v~q~~~~~~ltv~D~~g~~ 131 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGV---------VEVTM-ERH-------PYKHPNIPNVVFWDLPGIG 131 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-------------C-CCE-------EEECSSCTTEEEEECCCGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECC---------eecce-eEE-------eccccccCCeeehHhhccc
Confidence 348999999999999999999874 23322111 11111 122 111111 258999999964
Q ss_pred CchHHHHHHH-----HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCC-------CCC---hhhhHHHH
Q psy1758 997 DFGGEVERIL-----SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS-------NAR---PEWVVDAT 1061 (1527)
Q Consensus 997 df~~ev~~~l-----~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~-------~a~---~~~v~~~~ 1061 (1527)
.-...+..++ ...|..++ +|+.. .+.|-..+.+.+...+.|+++|+||.|.. +-| .+++.+.+
T Consensus 132 ~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l 209 (413)
T 1tq4_A 132 STNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDI 209 (413)
T ss_dssp GSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHH
Confidence 2111223332 33455554 78755 56777777777778899999999999863 112 23333333
Q ss_pred HHHHhh-hccccccc-CCcEEEecc--ccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1062 FDLFDK-LCATEEQL-DFPVIYTSA--LHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1062 ~~~~~~-l~~~~~~~-~~pvi~~SA--~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
++...+ +... .. .-.++++|+ +++. |++.|.+.+.+.+|.-
T Consensus 210 ~~l~~~~l~~~--g~~~~~iiliSsh~l~~~----------~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 210 RLNCVNTFREN--GIAEPPIFLLSNKNVCHY----------DFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHHHHHT--TCSSCCEEECCTTCTTST----------THHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHhc--CCCCCcEEEEecCcCCcc----------CHHHHHHHHHHhCccc
Confidence 332210 0000 01 125788999 5665 7999999999999754
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.06 E-value=3.7e-06 Score=100.92 Aligned_cols=84 Identities=15% Similarity=0.243 Sum_probs=63.6
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC-----------------
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG----------------- 984 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~----------------- 984 (1527)
..+|+|+|++|+|||||+++|++... ......+++|+.+..+.+.+.+
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~---------------a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~ 84 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVL---------------GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVP 84 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTT---------------TSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc---------------ccccCCCceeecceeeeeeeCCcchhhhhhhcccccccC
Confidence 45899999999999999999987421 0122235566666666666654
Q ss_pred eEEEEEeCCCCCC-------chHHHHHHHHhcCEEEEEEeCCC
Q psy1758 985 TRINIIDTPGHAD-------FGGEVERILSMVDNVLLLIDAVE 1020 (1527)
Q Consensus 985 ~~iniiDTPGh~d-------f~~ev~~~l~~aD~ailVVDa~~ 1020 (1527)
..+.++||||... +.......++.+|++++|+|+.+
T Consensus 85 ~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 85 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5789999999644 45577788899999999999976
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.8e-06 Score=103.75 Aligned_cols=82 Identities=12% Similarity=0.138 Sum_probs=61.9
Q ss_pred cceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCC----------C-CChhHHHHHHHHHH--
Q psy1758 969 RGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVE----------G-PMPQTRFVTRKALK-- 1035 (1527)
Q Consensus 969 rGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~----------G-~~~qt~~~~~~~~~-- 1035 (1527)
+..|+......+.+++..+.||||+|+..|...+..+++.++++|+|+|.++ . -+......|.....
T Consensus 201 r~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~ 280 (402)
T 1azs_C 201 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280 (402)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT
T ss_pred ccceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc
Confidence 3334444456778889999999999999999999999999999999999986 1 11233444444443
Q ss_pred --cCCccEEEEeccCCC
Q psy1758 1036 --LGFKPIVVVNKIDRS 1050 (1527)
Q Consensus 1036 --~glp~IvviNKiD~~ 1050 (1527)
.++|+|+|.||+|+.
T Consensus 281 ~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 281 WLRTISVILFLNKQDLL 297 (402)
T ss_dssp TCSSCCEEEEEECHHHH
T ss_pred cCCCCeEEEEEEChhhh
Confidence 368899999999974
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.9e-06 Score=98.94 Aligned_cols=97 Identities=22% Similarity=0.220 Sum_probs=67.1
Q ss_pred hhhHHHHHHhhccccCEEEEEEeCCCCC-cHHH-HHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccC
Q psy1758 126 HEAFTAMRARGAKVTDIVVLVVAADDGV-MPQT-REAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYG 203 (1527)
Q Consensus 126 ~e~f~~~~~~~~~~aD~~IlVvda~~g~-~~qt-~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~ 203 (1527)
+++|..+...+++.+|++++|+|+++.. .... ..++..+...++|+++|+||+|+.+............ ....+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~---~~~~~- 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWIS---IYRDA- 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHH---HHHHT-
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHH---HHHHC-
Confidence 6777777777899999999999999854 4433 2344455668899999999999976321010111111 11112
Q ss_pred CCCcEEEeeccCCCChhHHHHHHH
Q psy1758 204 GASPFISISAKTGVGINKLLENIS 227 (1527)
Q Consensus 204 ~~~~v~~iSAktg~gI~eL~~~l~ 227 (1527)
..+++++||++|.|+++|++.+.
T Consensus 142 -g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 142 -GYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp -TCEEEECCTTTCTTHHHHHHHTT
T ss_pred -CCeEEEEECCCCCCHHHHHhhcc
Confidence 24899999999999999998763
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.01 E-value=5e-06 Score=100.82 Aligned_cols=151 Identities=18% Similarity=0.224 Sum_probs=82.2
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecch--------h-hhhcccceeEeeee-------------E
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDS--------N-EIEKERGITIFSKN-------------C 978 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~--------~-~~E~erGiTi~~~~-------------~ 978 (1527)
..+.|+++|++|+||||++..|...... ....+.---.|. . ......|+.+.... .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~--~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK--RGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 3578999999999999999999743110 000000000000 0 00111233222111 0
Q ss_pred EEEecCeEEEEEeCCCCCC------chHHHHHHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCC
Q psy1758 979 SIEYNGTRINIIDTPGHAD------FGGEVERILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS 1050 (1527)
Q Consensus 979 ~~~~~~~~iniiDTPGh~d------f~~ev~~~l~--~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~ 1050 (1527)
.+.++++.+.||||||... +..++....+ ..|.++||+||..|.. .........+.--+..+|+||+|..
T Consensus 174 ~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~--a~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK--AYDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--GHHHHHHHHHHCSSEEEEEECGGGC
T ss_pred HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH--HHHHHHHHhcccCCcEEEEeccccc
Confidence 1123478899999999644 4445544333 3599999999987622 2222333332224567889999986
Q ss_pred CCChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCc
Q psy1758 1051 NARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYA 1089 (1527)
Q Consensus 1051 ~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~ 1089 (1527)
++....+..... ...|+.|++. |+.
T Consensus 252 -a~~G~als~~~~-----------~g~Pi~fig~--Ge~ 276 (433)
T 3kl4_A 252 -AKGGGALSAVVA-----------TGATIKFIGT--GEK 276 (433)
T ss_dssp -SCHHHHHHHHHH-----------HTCEEEEEEC--CSS
T ss_pred -ccchHHHHHHHH-----------HCCCEEEEEC--CCC
Confidence 444333332221 2468888886 543
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.5e-05 Score=96.66 Aligned_cols=147 Identities=18% Similarity=0.196 Sum_probs=78.6
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchh---------hhhcccceeEeeeeE-------------
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSN---------EIEKERGITIFSKNC------------- 978 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~---------~~E~erGiTi~~~~~------------- 978 (1527)
+.+.|+++|++|+||||++..|...... +...+.-.-.|.. ......|+.+.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~--~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK--RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVD 176 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHH
Confidence 3578999999999999999999753110 0000000000100 111223443322110
Q ss_pred EEEecCeEEEEEeCCCCCCchHHHHH------HHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCCC
Q psy1758 979 SIEYNGTRINIIDTPGHADFGGEVER------ILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSN 1051 (1527)
Q Consensus 979 ~~~~~~~~iniiDTPGh~df~~ev~~------~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~~ 1051 (1527)
.+..+++.+.||||||......+... ....+|.++||+||..|- +.........+ .+++ .+|+||+|...
T Consensus 177 ~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~-~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKE-ATPIGSIIVTKLDGSA 253 (443)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHH-SCTTEEEEEECCSSCS
T ss_pred HHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHh-hCCCeEEEEECCCCcc
Confidence 01124588999999996554333222 234579999999998752 22222222222 3444 58899999853
Q ss_pred CChhhhHHHHHHHHhhhcccccccCCcEEEecc
Q psy1758 1052 ARPEWVVDATFDLFDKLCATEEQLDFPVIYTSA 1084 (1527)
Q Consensus 1052 a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA 1084 (1527)
.....+. +. .....|+.|++.
T Consensus 254 -~gG~~ls-~~----------~~~g~PI~fig~ 274 (443)
T 3dm5_A 254 -KGGGALS-AV----------AATGAPIKFIGT 274 (443)
T ss_dssp -SHHHHHH-HH----------HTTCCCEEEEEC
T ss_pred -cccHHHH-HH----------HHHCCCEEEEEc
Confidence 2222211 11 113568998886
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.95 E-value=4.7e-06 Score=97.11 Aligned_cols=129 Identities=19% Similarity=0.145 Sum_probs=86.6
Q ss_pred EEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCC-Chh-HHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHH
Q psy1758 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-MPQ-TRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFD 1063 (1527)
Q Consensus 986 ~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~-~~q-t~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~ 1063 (1527)
+++|||| +..|......+++.+|++|+|+|+++.. ... ...++..+...++|+++|+||+|+.+.+ . ++++.+
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~--~-v~~~~~ 138 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDED--D-LRKVRE 138 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHH--H-HHHHHH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCch--h-HHHHHH
Confidence 7899999 8888887778899999999999999754 222 2334445556789999999999996532 1 233333
Q ss_pred HHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCCCCCCCceeEEEeeeccccCceEEEEEe
Q psy1758 1064 LFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRI 1143 (1527)
Q Consensus 1064 ~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV 1143 (1527)
...... .. ++++++||++|. |++++++.+.. . +.-+.-.++.|+-++.+.
T Consensus 139 ~~~~~~----~~-~~~~~~SAktg~----------gv~~lf~~l~g-----------e----iv~l~G~sG~GKSTll~~ 188 (301)
T 1u0l_A 139 LEEIYS----GL-YPIVKTSAKTGM----------GIEELKEYLKG-----------K----ISTMAGLSGVGKSSLLNA 188 (301)
T ss_dssp HHHHHT----TT-SCEEECCTTTCT----------THHHHHHHHSS-----------S----EEEEECSTTSSHHHHHHH
T ss_pred HHHHHh----hh-CcEEEEECCCCc----------CHHHHHHHhcC-----------C----eEEEECCCCCcHHHHHHH
Confidence 222221 11 679999999998 99999887632 1 112223445666555566
Q ss_pred ecCccc
Q psy1758 1144 LSGRIK 1149 (1527)
Q Consensus 1144 ~sG~lk 1149 (1527)
..|.++
T Consensus 189 l~g~~~ 194 (301)
T 1u0l_A 189 INPGLK 194 (301)
T ss_dssp HSTTCC
T ss_pred hccccc
Confidence 666544
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=2.4e-05 Score=89.60 Aligned_cols=113 Identities=17% Similarity=0.249 Sum_probs=70.8
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccc--------cCCceeE-EEEEEEEEeCC--eEEEEEeCCChh-----------
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFS--------EAGGITQ-HIGAYNVVTNH--GSITFLDTPGHE----------- 127 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~--------~~~giT~-~~~~~~~~~~~--~~i~~iDTPG~e----------- 127 (1527)
++++++|++|+|||||++.|.+.....+ ..+..+. ....+.+...+ ..++++|+||..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 5799999999999999999976542211 0111110 00011111111 268999999821
Q ss_pred --h-----HHHHHHh----------hccccCEEEEEEeCC-CCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcc
Q psy1758 128 --A-----FTAMRAR----------GAKVTDIVVLVVAAD-DGVMPQTREAIAHAKISGVPLIVAINKIDKLDI 183 (1527)
Q Consensus 128 --~-----f~~~~~~----------~~~~aD~~IlVvda~-~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~ 183 (1527)
. |...... .+..++++++++|.. .+..+...+.+..+... +++|+|+||+|....
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCH
Confidence 1 1111111 123368889999955 68889998888888776 999999999998764
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.6e-05 Score=89.93 Aligned_cols=101 Identities=15% Similarity=0.050 Sum_probs=70.9
Q ss_pred CChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHH----HH---H-HcCCCEEEEEEc-ccCCcch-hHHHHHHHh
Q psy1758 124 PGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIA----HA---K-ISGVPLIVAINK-IDKLDIN-LDRIKQDLI 193 (1527)
Q Consensus 124 PG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~----~~---~-~~~vpiIvviNK-iDl~~~~-~~~~~~~l~ 193 (1527)
.||+.++.++..|+..+|++|+|||++|.......+.+. .+ . ..++|++|+.|| .|++.+- ..++.+.+.
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~ 274 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH 274 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcC
Confidence 368999999999999999999999999854322333222 22 1 258999999997 5887643 334444333
Q ss_pred hhcccccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 194 SEQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 194 ~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
-... ...+.+.+|||++|+|+.+-+++|...
T Consensus 275 L~~l-----~r~W~Iq~csA~tGeGL~EGldWL~~~ 305 (312)
T 3l2o_B 275 LNLL-----NHPWLVQDTEAETLTGFLNGIEWILEE 305 (312)
T ss_dssp GGGG-----CSCEEEEEEETTTCTTHHHHHHHHHHH
T ss_pred CccC-----CCcEEEEecccCCCcCHHHHHHHHHHH
Confidence 2221 234589999999999999999999744
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=97.89 E-value=3.5e-06 Score=102.66 Aligned_cols=155 Identities=16% Similarity=0.158 Sum_probs=83.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc------ccc-cc------------------------cCCceeEEEEE----EEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT------NVV-FS------------------------EAGGITQHIGA----YNVV 112 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~------~~~-~~------------------------~~~giT~~~~~----~~~~ 112 (1527)
++.+|+++|++|+||||+++.|... .+. .. ..++.+.+... ..-.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988642 110 00 00001111100 0000
Q ss_pred eCCeEEEEEeCCChhh----HHHHHH--hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCC-C-EEEEEEcccCCcch
Q psy1758 113 TNHGSITFLDTPGHEA----FTAMRA--RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGV-P-LIVAINKIDKLDIN 184 (1527)
Q Consensus 113 ~~~~~i~~iDTPG~e~----f~~~~~--~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~v-p-iIvviNKiDl~~~~ 184 (1527)
+.+..+.|+||||... +..... ..+..+|.+++|+|+..+. .......... ..+ | ..+|+||+|....
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~-~~~~~i~gvVlnK~D~~~~- 253 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFK-EAVGEIGSIIVTKLDGSAK- 253 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHH-TTSCSCEEEEEECSSSCST-
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHHh-hcccCCeEEEEeCCCCccc-
Confidence 2456799999999432 222221 2234689999999998763 2233333222 346 6 8899999998542
Q ss_pred hHHHHHHHhhhcc---------cccccCCCCcEEEeeccCCCC-hhHHHHHH
Q psy1758 185 LDRIKQDLISEQV---------IPEEYGGASPFISISAKTGVG-INKLLENI 226 (1527)
Q Consensus 185 ~~~~~~~l~~~~~---------~~~~~~~~~~v~~iSAktg~g-I~eL~~~l 226 (1527)
............. ...+...+.|...+|+..|.| +..|++.+
T Consensus 254 ~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~ 305 (432)
T 2v3c_C 254 GGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKA 305 (432)
T ss_dssp THHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTT
T ss_pred hHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHH
Confidence 1212211111100 001111233455678888887 77777666
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00013 Score=78.75 Aligned_cols=111 Identities=13% Similarity=-0.003 Sum_probs=66.6
Q ss_pred EEEEEeCC------CCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHH---HH--H---cCCccEEEEecc-CCC
Q psy1758 986 RINIIDTP------GHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRK---AL--K---LGFKPIVVVNKI-DRS 1050 (1527)
Q Consensus 986 ~iniiDTP------Gh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~---~~--~---~glp~IvviNKi-D~~ 1050 (1527)
++..--+| |+..+...+..++..+|++|+|||+++......+.-+.. +. . .+.|++|+.||. |.+
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 44555666 566677788899999999999999987533234443321 11 1 478999999995 787
Q ss_pred CCChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1051 NARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1051 ~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
++-.. .++.+.+. +... ...+-+..+||++|. |+.+-++++.+.+.
T Consensus 177 ~Ams~---~EI~e~L~-L~~l--~R~W~Iq~csA~TGe----------GL~EGLdWL~~~l~ 222 (227)
T 3l82_B 177 KRMPC---FYLAHELH-LNLL--NHPWLVQDTEAETLT----------GFLNGIEWILEEVE 222 (227)
T ss_dssp CBCCH---HHHHHHTT-GGGG--CSCEEEEEEETTTCT----------THHHHHHHHTTTTT
T ss_pred CCCCH---HHHHHHcC-CcCC--CCCEEEEEeECCCCc----------CHHHHHHHHHHHHH
Confidence 66322 23333221 2211 235678999999998 99999999988764
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.85 E-value=4.6e-06 Score=99.04 Aligned_cols=119 Identities=18% Similarity=0.163 Sum_probs=76.2
Q ss_pred cCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCC-------CCC----ChhHHHHHHHHHH----cCCccEEEEecc
Q psy1758 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAV-------EGP----MPQTRFVTRKALK----LGFKPIVVVNKI 1047 (1527)
Q Consensus 983 ~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~-------~G~----~~qt~~~~~~~~~----~glp~IvviNKi 1047 (1527)
+...+.||||+|+..|...+..+++.++++|+|+|.+ +.. +......|..... .+.|+++|.||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3578999999999999999999999999999999987 111 1233344444433 368999999999
Q ss_pred CCCCCC------------------------hhhhHHHHHHHHhhh---cccc--cccCCcEEEeccccCCcCCCcccccC
Q psy1758 1048 DRSNAR------------------------PEWVVDATFDLFDKL---CATE--EQLDFPVIYTSALHGYANENSKARQG 1098 (1527)
Q Consensus 1048 D~~~a~------------------------~~~v~~~~~~~~~~l---~~~~--~~~~~pvi~~SA~~g~~~~~~~~~~~ 1098 (1527)
|+.... .++..+-+...|..+ .... ....++++.+||+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~---------- 330 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQK---------- 330 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHH----------
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecch----------
Confidence 973210 111111122222222 0000 0123457899999998
Q ss_pred CChhHHHHHHhhc
Q psy1758 1099 NMIPLFEAILKYV 1111 (1527)
Q Consensus 1099 gi~~Ll~~i~~~l 1111 (1527)
|++.+|+++.+.+
T Consensus 331 nV~~vF~~v~~~I 343 (354)
T 2xtz_A 331 LVKKTFKLVDETL 343 (354)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8999998887654
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.79 E-value=6e-05 Score=86.83 Aligned_cols=101 Identities=23% Similarity=0.199 Sum_probs=66.2
Q ss_pred EEeCCChh-hHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhccc
Q psy1758 120 FLDTPGHE-AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVI 198 (1527)
Q Consensus 120 ~iDTPG~e-~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~ 198 (1527)
+-+.|||. +........+..+|+++.|+|+.++........-..+ .+.|.++|+||+|+.+... .......
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~---~~~~~~~--- 74 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADAAV---TQQWKEH--- 74 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCHHH---HHHHHHH---
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCHHH---HHHHHHH---
Confidence 44679986 5667778889999999999999986654432222222 5789999999999986321 1111111
Q ss_pred ccccCCCCcEEEeeccCCCChhHHHHHHHHHH
Q psy1758 199 PEEYGGASPFISISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 199 ~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~ 230 (1527)
.+. ...+++++||++|.|+++|++.+....
T Consensus 75 ~~~--~g~~~i~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 75 FEN--QGIRSLSINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp HHT--TTCCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred HHh--cCCcEEEEECCCcccHHHHHHHHHHHH
Confidence 011 124899999999999999999886543
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.79 E-value=4e-05 Score=88.90 Aligned_cols=122 Identities=19% Similarity=0.232 Sum_probs=71.2
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchh-----------hhhcccceeEeeee-------------
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSN-----------EIEKERGITIFSKN------------- 977 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~-----------~~E~erGiTi~~~~------------- 977 (1527)
...|+++|+.|+||||++..|...... ..+.+. +.|.. ......|+.+.+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~--l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l 173 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVG--LVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGV 173 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEE--EEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEE--EEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHH
Confidence 568899999999999999999754210 001110 00100 00112344332211
Q ss_pred EEEEecCeEEEEEeCCCCCC--chHHHH------HHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCc-cEEEEeccC
Q psy1758 978 CSIEYNGTRINIIDTPGHAD--FGGEVE------RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKID 1048 (1527)
Q Consensus 978 ~~~~~~~~~iniiDTPGh~d--f~~ev~------~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp-~IvviNKiD 1048 (1527)
..+.++++.+.||||||... ....+. ..+..+|.+++|+|+..| .++....+.... .+| ..+|+||+|
T Consensus 174 ~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D 250 (297)
T 1j8m_F 174 EKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMD 250 (297)
T ss_dssp HHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGG
T ss_pred HHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCC
Confidence 01123678899999999877 433332 245678999999999864 233333333332 577 467899999
Q ss_pred CC
Q psy1758 1049 RS 1050 (1527)
Q Consensus 1049 ~~ 1050 (1527)
..
T Consensus 251 ~~ 252 (297)
T 1j8m_F 251 GT 252 (297)
T ss_dssp GC
T ss_pred CC
Confidence 74
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.77 E-value=4e-05 Score=88.27 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=69.8
Q ss_pred EEeCCCCC-CchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhh
Q psy1758 989 IIDTPGHA-DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDK 1067 (1527)
Q Consensus 989 iiDTPGh~-df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~ 1067 (1527)
|-+-|||. .+..++.+.+..+|+++.|+||.++.......+-+.+ .++|.++|+||+|+.+ . +..+...+.+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~--~-~~~~~~~~~~~~ 77 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD--A-AVTQQWKEHFEN 77 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC--H-HHHHHHHHHHHT
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC--H-HHHHHHHHHHHh
Confidence 44679997 4678899999999999999999987655432222222 5789999999999965 2 223333333321
Q ss_pred hcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1068 LCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1068 l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.++|++++||++|. |+..|++.+.+.++
T Consensus 78 -------~g~~~i~iSA~~~~----------gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 78 -------QGIRSLSINSVNGQ----------GLNQIVPASKEILQ 105 (282)
T ss_dssp -------TTCCEEECCTTTCT----------TGGGHHHHHHHHHH
T ss_pred -------cCCcEEEEECCCcc----------cHHHHHHHHHHHHH
Confidence 24579999999998 99999998877664
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.77 E-value=8e-05 Score=90.30 Aligned_cols=142 Identities=17% Similarity=0.163 Sum_probs=78.0
Q ss_pred CCCEEEEEecCCCChhHHHHHHHc------cccc-cc----------------cCCceeEEEEEE-------------EE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRK------TNVV-FS----------------EAGGITQHIGAY-------------NV 111 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~------~~~~-~~----------------~~~giT~~~~~~-------------~~ 111 (1527)
++.+|+++|.+|+||||++..|.. ..+. .. ...++....... ..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999988753 1210 00 001111100000 00
Q ss_pred EeCCeEEEEEeCCCh----hhHHHHHH--hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh
Q psy1758 112 VTNHGSITFLDTPGH----EAFTAMRA--RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL 185 (1527)
Q Consensus 112 ~~~~~~i~~iDTPG~----e~f~~~~~--~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~ 185 (1527)
...+..+.|+||||. +....... ..+..+|.++||+|+..+- +...........-.+..+++||+|.....
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~~~~i~gVIlTKlD~~~~g- 255 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKEATPIGSIIVTKLDGSAKG- 255 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHHSCTTEEEEEECCSSCSSH-
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHhhCCCeEEEEECCCCcccc-
Confidence 013467999999992 12222111 2334579999999999752 23333444443334577999999986421
Q ss_pred HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHH
Q psy1758 186 DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223 (1527)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~ 223 (1527)
........ . ...|+..++. |+++++|.
T Consensus 256 G~~ls~~~-------~--~g~PI~fig~--Ge~vddL~ 282 (443)
T 3dm5_A 256 GGALSAVA-------A--TGAPIKFIGT--GEKIDDIE 282 (443)
T ss_dssp HHHHHHHH-------T--TCCCEEEEEC--SSSTTCEE
T ss_pred cHHHHHHH-------H--HCCCEEEEEc--CCChHHhh
Confidence 11111111 1 1247777775 88776543
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.68 E-value=3.1e-05 Score=94.38 Aligned_cols=127 Identities=14% Similarity=0.156 Sum_probs=72.6
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCccccccccc--------ceecchh-hhhcccceeEeeeeE------------
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN--------ARIMDSN-EIEKERGITIFSKNC------------ 978 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~--------~~~~D~~-~~E~erGiTi~~~~~------------ 978 (1527)
...+.|+++|+.|+||||++..|......- ....+- ....+.. ......|+.+.+...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~-~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l 176 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREK-HKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAAL 176 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHT-SCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHH
Confidence 346789999999999999999998542110 000000 0000000 012234444433210
Q ss_pred -EEEecCeEEEEEeCCCCCCchHHHHHH------HHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCC
Q psy1758 979 -SIEYNGTRINIIDTPGHADFGGEVERI------LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRS 1050 (1527)
Q Consensus 979 -~~~~~~~~iniiDTPGh~df~~ev~~~------l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~ 1050 (1527)
.+.+.++.+.||||||...+...+... +..+|.+++|+|+..|. . ........ ..++++ -+|+||+|..
T Consensus 177 ~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~-~-~~~~~~~f-~~~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 177 KEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ-D-AANTAKAF-NEALPLTGVVLTKVDGD 253 (433)
T ss_dssp HHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT-T-HHHHHHHH-HHHSCCCCEEEECTTSS
T ss_pred HHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH-H-HHHHHHHH-hccCCCeEEEEecCCCC
Confidence 112357899999999987775554443 33678999999998762 2 22222211 123553 4689999974
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=3e-05 Score=97.50 Aligned_cols=98 Identities=17% Similarity=0.152 Sum_probs=59.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCcee----EEEEEEEEE---eCCeEEEEEeCCChhhHH------HHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGIT----QHIGAYNVV---TNHGSITFLDTPGHEAFT------AMR 133 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT----~~~~~~~~~---~~~~~i~~iDTPG~e~f~------~~~ 133 (1527)
.+.++|+|+|.+|+|||||+|+|.+..... ..+++| ..+..+... ..+..+.|+||||-.... ...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~ 114 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSW 114 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHH
Confidence 345689999999999999999999876432 233333 322222111 245689999999932211 011
Q ss_pred HhhccccCEEEEEEeCCCCCcHHHHHHHHHHH
Q psy1758 134 ARGAKVTDIVVLVVAADDGVMPQTREAIAHAK 165 (1527)
Q Consensus 134 ~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~ 165 (1527)
..++...-..++|||+..++..+....+..+.
T Consensus 115 ~fala~llss~lv~n~~~~i~~~dl~~l~~v~ 146 (592)
T 1f5n_A 115 IFALAVLLSSTFVYNSIGTINQQAMDQLYYVT 146 (592)
T ss_dssp HHHHHHHHCSEEEEEEESCSSHHHHHTTHHHH
T ss_pred HHHHHHHhcCeEEEECCCCccHHHHHHHHHHH
Confidence 11111111126888888888888777665543
|
| >3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.64 E-value=3.4e-05 Score=88.67 Aligned_cols=140 Identities=23% Similarity=0.258 Sum_probs=92.6
Q ss_pred eeEEEEeCCCCCCHH-------HHHHHHHHHhccccccccCCCCCCCeEEEEEEecc--cccccccccCCCcEEEEEEEE
Q psy1758 663 HGVLLLDKPYGLSSN-------NALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGE--ATKFSNYLSEADKYYEAIIHL 733 (1527)
Q Consensus 663 ~G~~~v~Kp~g~ts~-------~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~--~tk~~~~~~~~~K~Y~~~~~~ 733 (1527)
.-++++|||+|+.|| .+++.+.. ..++.+.|.||..+||||+++-.. +.+|..--....|+|.+.+.
T Consensus 67 ~~~lvvnKP~G~~~~~~~~~~~tl~~~l~~---~~~~~~VhRLD~dTSGLllla~d~~~~~~L~~~~~~v~K~Y~a~V~- 142 (290)
T 3dh3_A 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVD- 142 (290)
T ss_dssp CCEEEEEECTTCBCCCCSSCTTBHHHHHTC---SSCCEESSCCCTTCEEEEEEESCTTHHHHHHCGGGCCCEEEEEEES-
T ss_pred ceEEEEECCCccccCCCCCCCCcHHHHhhc---cCceeeeccCCCCCcceEEEcCCHHHHHHHHHhhCCcCEEEEEEEC-
Confidence 348999999999887 46666654 457899999999999999999865 34454444467999999874
Q ss_pred CccccCCCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEE
Q psy1758 734 GITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITII 813 (1527)
Q Consensus 734 G~~tdt~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~ 813 (1527)
| +++.+.++..- .| +.++|. ..++..+ +..
T Consensus 143 ----------G---------~~~~~~i~~l~---~G-----------v~l~~~--------------~~~~~~v---~~~ 172 (290)
T 3dh3_A 143 ----------K---------PITEEFIRGMS---AG-----------VPILGT--------------VTKKCKV---KKE 172 (290)
T ss_dssp ----------S---------CCCHHHHHHHH---TC-----------CBCSSS--------------BCCCCEE---EEC
T ss_pred ----------C---------CCCHHHHHHHh---cC-----------cccCCc--------------ccceEEE---EEc
Confidence 2 23455544211 11 112221 1111111 111
Q ss_pred EEeCCeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCcccccc
Q psy1758 814 DYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDK 864 (1527)
Q Consensus 814 ~~~~~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~ 864 (1527)
+...+.+.++.++--.||..+..+|.. +..|.|+++|+++|++
T Consensus 173 --~~~~l~l~l~tGR~HQIR~~~~~lG~p------V~~L~R~~iG~l~L~~ 215 (290)
T 3dh3_A 173 --APFVFRITLVQGLNRQIRRMCEHFGYE------VKKLERTRIMNVSLSG 215 (290)
T ss_dssp --SSSEEEEEESCCCTTHHHHHHHHTTCC------EEEEEEEEETTEECTT
T ss_pred --CCeEEEEEEeCCCChHHHHHHHHcCCe------EEEeEEEEECCEecCC
Confidence 234566666667777899998876543 7899999999999975
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=2.3e-05 Score=98.48 Aligned_cols=107 Identities=16% Similarity=0.205 Sum_probs=64.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEE-EecCeEEEEEeCCCCCCc
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSI-EYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~-~~~~~~iniiDTPGh~df 998 (1527)
.....|+|+|.+|+|||||+|+|++....+...+.+. ...+|+.... ..+ ...+..+.|+||||..+.
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~---------~~T~gi~~~~--~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQ---------SHTKGIWMWC--VPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSS---------CCCCSEEEEE--EECSSSTTCEEEEEEECCBCCG
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCC---------CceeEEEEee--cccccCCCceEEEecCCCcCcc
Confidence 3457899999999999999999987643222111110 1112221100 000 125678999999997654
Q ss_pred hH-----HHH-HHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcC
Q psy1758 999 GG-----EVE-RILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG 1037 (1527)
Q Consensus 999 ~~-----ev~-~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~g 1037 (1527)
.. .+. .++...-..++|+|+..++..+....+..+.+.+
T Consensus 105 ~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~~ 149 (592)
T 1f5n_A 105 EKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTELT 149 (592)
T ss_dssp GGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTHH
T ss_pred cccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHHh
Confidence 32 111 1233322337888998888888887777666544
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=97.61 E-value=5.2e-05 Score=90.78 Aligned_cols=100 Identities=22% Similarity=0.235 Sum_probs=66.2
Q ss_pred ChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch--hHHHHHHHhhhccccccc
Q psy1758 125 GHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN--LDRIKQDLISEQVIPEEY 202 (1527)
Q Consensus 125 G~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~--~~~~~~~l~~~~~~~~~~ 202 (1527)
.+++|.+.....+..++++++|+|+.+.... +...+... ..+.|+++|+||+|+.+.+ .+.....+... ....
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s-~~~~l~~~-l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~---~~~~ 131 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNGS-FIPGLPRF-AADNPILLVGNKADLLPRSVKYPKLLRWMRRM---AEEL 131 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGGG-CCSSHHHH-CTTSCEEEEEECGGGSCTTCCHHHHHHHHHHH---HHTT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCCc-hhhHHHHH-hCCCCEEEEEEChhcCCCccCHHHHHHHHHHH---HHHc
Confidence 4899999999988999999999999985432 22222221 1378999999999997642 12222221111 0111
Q ss_pred CC-CCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 203 GG-ASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 203 ~~-~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
+. ..+++++||++|.|+++|++.+...
T Consensus 132 g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 132 GLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp TCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 21 1378999999999999999998643
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=97.58 E-value=4.4e-05 Score=91.38 Aligned_cols=99 Identities=20% Similarity=0.218 Sum_probs=65.8
Q ss_pred ChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhccccccc
Q psy1758 125 GHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEY 202 (1527)
Q Consensus 125 G~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~ 202 (1527)
.+++|..+.....+.+|++++|+|+++.. ..|...+... ..+.|+++|+||+|+.+... +.....+... ....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-~~~~~~l~~~-~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~---~~~~ 129 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-GSWLPGLHRF-VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYS---AKQL 129 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-HHCCTTHHHH-SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHH---HHHT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-ccHHHHHHHH-hCCCcEEEEEEChhcCCcccCHHHHHHHHHHH---HHHc
Confidence 46899999999999999999999999732 2222222222 13789999999999975331 1222211110 0111
Q ss_pred CC-CCcEEEeeccCCCChhHHHHHHHH
Q psy1758 203 GG-ASPFISISAKTGVGINKLLENISL 228 (1527)
Q Consensus 203 ~~-~~~v~~iSAktg~gI~eL~~~l~~ 228 (1527)
+. ..+++++||++|.|+++|++.+..
T Consensus 130 g~~~~~v~~iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 130 GLKPEDVFLISAAKGQGIAELADAIEY 156 (368)
T ss_dssp TCCCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCCcccEEEEeCCCCcCHHHHHhhhhh
Confidence 11 137999999999999999999864
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00011 Score=89.09 Aligned_cols=139 Identities=19% Similarity=0.174 Sum_probs=77.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHc------ccccc-c----------------cCCceeEEEEEE-------------EE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRK------TNVVF-S----------------EAGGITQHIGAY-------------NV 111 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~------~~~~~-~----------------~~~giT~~~~~~-------------~~ 111 (1527)
++..|+++|++|+||||++..|.. .++.. . ...++....... ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 466889999999999999988852 11100 0 011111100000 00
Q ss_pred EeCCeEEEEEeCCChhh------HHHHHHh--hccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcc
Q psy1758 112 VTNHGSITFLDTPGHEA------FTAMRAR--GAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDI 183 (1527)
Q Consensus 112 ~~~~~~i~~iDTPG~e~------f~~~~~~--~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~ 183 (1527)
...+..+.|+||||... +...... .....|.+++|+|+..+ .+...........-.+..+++||+|...
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG--QKAYDLASRFHQASPIGSVIITKMDGTA- 252 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGGHHHHHHHHHHCSSEEEEEECGGGCS-
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc--hHHHHHHHHHhcccCCcEEEEecccccc-
Confidence 01255789999999422 2222221 22346999999999875 2233344444433356889999999753
Q ss_pred hhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 184 NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 184 ~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
............ ..|+..++. |++++
T Consensus 253 ~~G~als~~~~~---------g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 253 KGGGALSAVVAT---------GATIKFIGT--GEKID 278 (433)
T ss_dssp CHHHHHHHHHHH---------TCEEEEEEC--CSSSS
T ss_pred cchHHHHHHHHH---------CCCEEEEEC--CCChH
Confidence 222222211111 247777775 87775
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.52 E-value=4.4e-05 Score=88.90 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=63.8
Q ss_pred CCCchHHHHHHHHhcCEEEEEEeCCCCC-ChhH-HHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 995 HADFGGEVERILSMVDNVLLLIDAVEGP-MPQT-RFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 995 h~df~~ev~~~l~~aD~ailVVDa~~G~-~~qt-~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
+..|..-...+++.+|.+++|+|++++. ..+. ...+..+...++|+++|+||+|+.+.+.....++..+.+..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~----- 140 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRD----- 140 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH-----
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHH-----
Confidence 3344333334689999999999999764 3332 34455666789999999999999643210112333333322
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHH
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAI 1107 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i 1107 (1527)
..+|++++||++|. |+++|++.+
T Consensus 141 --~g~~~~~~SA~~g~----------gi~~L~~~l 163 (302)
T 2yv5_A 141 --AGYDVLKVSAKTGE----------GIDELVDYL 163 (302)
T ss_dssp --TTCEEEECCTTTCT----------THHHHHHHT
T ss_pred --CCCeEEEEECCCCC----------CHHHHHhhc
Confidence 24679999999998 888888765
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00089 Score=77.57 Aligned_cols=141 Identities=18% Similarity=0.185 Sum_probs=79.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc------cccc--ccC--C-------------ceeEEEEE-------------EEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT------NVVF--SEA--G-------------GITQHIGA-------------YNV 111 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~------~~~~--~~~--~-------------giT~~~~~-------------~~~ 111 (1527)
++..|+++|++|+||||++..|... .+.. ... + ++..-... ..+
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~ 176 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKF 176 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999887521 2110 000 0 11100000 000
Q ss_pred EeCCeEEEEEeCCChhh--HHH-HHH-----hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCc
Q psy1758 112 VTNHGSITFLDTPGHEA--FTA-MRA-----RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLD 182 (1527)
Q Consensus 112 ~~~~~~i~~iDTPG~e~--f~~-~~~-----~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~ 182 (1527)
...+..+.|+||||... ... ++. ..+..+|.+++|+|+..+ .+..+.+..... ..| ..+++||+|...
T Consensus 177 ~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 177 LSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTA 253 (297)
T ss_dssp HHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCT
T ss_pred HhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCc
Confidence 11455799999999554 211 111 234578999999999864 334444444333 467 788999999753
Q ss_pred chhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHH
Q psy1758 183 INLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223 (1527)
Q Consensus 183 ~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~ 223 (1527)
....... +.. .+ ..|+..++ +|+++++|.
T Consensus 254 -~~g~~~~-~~~------~~--~~pi~~i~--~Ge~v~dl~ 282 (297)
T 1j8m_F 254 -KGGGALS-AVA------AT--GATIKFIG--TGEKIDELE 282 (297)
T ss_dssp -THHHHHH-HHH------TT--TCCEEEEE--CSSSTTCEE
T ss_pred -chHHHHH-HHH------HH--CcCEEEEe--CCCChhhcc
Confidence 1111111 111 11 24777766 688887654
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00014 Score=82.81 Aligned_cols=92 Identities=20% Similarity=0.223 Sum_probs=61.7
Q ss_pred CCCCCch-HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc
Q psy1758 993 PGHADFG-GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 993 PGh~df~-~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~ 1071 (1527)
|||.... .++...+..+|.++.|+||.++.......+ ..+ ++|+++|+||+|+.+. +..++..+.+.+
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~ll---~k~~iivlNK~DL~~~---~~~~~~~~~~~~---- 73 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-DFS---RKETIILLNKVDIADE---KTTKKWVEFFKK---- 73 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-CCT---TSEEEEEEECGGGSCH---HHHHHHHHHHHH----
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-Hhc---CCCcEEEEECccCCCH---HHHHHHHHHHHH----
Confidence 9997644 688899999999999999998755432211 111 8999999999999652 223333333322
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHh
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILK 1109 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~ 1109 (1527)
.++|+ ++||++|. |++.|++.+.+
T Consensus 74 ---~g~~v-~iSa~~~~----------gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 ---QGKRV-ITTHKGEP----------RKVLLKKLSFD 97 (262)
T ss_dssp ---TTCCE-EECCTTSC----------HHHHHHHHCCC
T ss_pred ---cCCeE-EEECCCCc----------CHHHHHHHHHH
Confidence 24578 99999998 88888877643
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00054 Score=87.32 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=43.8
Q ss_pred EEEEEeCCCh-------------hhHHHHHHhhccc-cCEEEEEEeCCCCCcH-HHHHHHHHHHHcCCCEEEEEEcccCC
Q psy1758 117 SITFLDTPGH-------------EAFTAMRARGAKV-TDIVVLVVAADDGVMP-QTREAIAHAKISGVPLIVAINKIDKL 181 (1527)
Q Consensus 117 ~i~~iDTPG~-------------e~f~~~~~~~~~~-aD~~IlVvda~~g~~~-qt~e~i~~~~~~~vpiIvviNKiDl~ 181 (1527)
.+.++|.||. .....+...++.. ..+++++++++..... .....+..+...+.+.|+|+||.|+.
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv 227 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLV 227 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGS
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhc
Confidence 5899999972 2344455555544 3566677776654432 33455555555678999999999997
Q ss_pred cc
Q psy1758 182 DI 183 (1527)
Q Consensus 182 ~~ 183 (1527)
..
T Consensus 228 ~~ 229 (608)
T 3szr_A 228 DK 229 (608)
T ss_dssp SS
T ss_pred Cc
Confidence 53
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00047 Score=80.96 Aligned_cols=148 Identities=19% Similarity=0.278 Sum_probs=77.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhc----cCcccccccccceecchhhh------hcccceeEeeeeEEE----------
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQ----SGTFRKNQNINARIMDSNEI------EKERGITIFSKNCSI---------- 980 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~----~g~~~~~~~~~~~~~D~~~~------E~erGiTi~~~~~~~---------- 980 (1527)
....++++|+.|+|||||+..|.+. .|.+.-.+. ........ -+..|+.+.......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~---D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS---DTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE---CCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee---cccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3467999999999999999999754 121110000 00000001 122343222111000
Q ss_pred ---EecCeEEEEEeCCCCCCc----hHHHHHH--HHhcCEEEEEEeCCCCCChhHHHHHHHHH-HcCCccEEEEeccCCC
Q psy1758 981 ---EYNGTRINIIDTPGHADF----GGEVERI--LSMVDNVLLLIDAVEGPMPQTRFVTRKAL-KLGFKPIVVVNKIDRS 1050 (1527)
Q Consensus 981 ---~~~~~~iniiDTPGh~df----~~ev~~~--l~~aD~ailVVDa~~G~~~qt~~~~~~~~-~~glp~IvviNKiD~~ 1050 (1527)
...++.+.++||+|.... ..++... .-..|-.++++|+..+- +....++... ..+ ..++++||+|..
T Consensus 205 ~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~-it~iilTKlD~~ 281 (328)
T 3e70_C 205 QHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVK-IDGIILTKLDAD 281 (328)
T ss_dssp HHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSC-CCEEEEECGGGC
T ss_pred HHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcC-CCEEEEeCcCCc
Confidence 013456788999996543 2333221 12479999999988762 2233333322 223 347889999973
Q ss_pred CCChhhhHHHHHHHHhhhcccccccCCcEEEeccccCC
Q psy1758 1051 NARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088 (1527)
Q Consensus 1051 ~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~ 1088 (1527)
+.....+.-+.. ...|+.|++ +|+
T Consensus 282 -a~~G~~l~~~~~-----------~~~pi~~i~--~Ge 305 (328)
T 3e70_C 282 -ARGGAALSISYV-----------IDAPILFVG--VGQ 305 (328)
T ss_dssp -SCCHHHHHHHHH-----------HTCCEEEEE--CSS
T ss_pred -cchhHHHHHHHH-----------HCCCEEEEe--CCC
Confidence 333333322221 245888888 555
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00016 Score=82.24 Aligned_cols=91 Identities=15% Similarity=0.059 Sum_probs=57.1
Q ss_pred CCChhhH-HHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccc
Q psy1758 123 TPGHEAF-TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEE 201 (1527)
Q Consensus 123 TPG~e~f-~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~ 201 (1527)
-|||... .......+..+|+++.|+|+.++........ ..+ +.|.++|+||+|+.+... ....... ...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~ll---~k~~iivlNK~DL~~~~~---~~~~~~~---~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-DFS---RKETIILLNKVDIADEKT---TKKWVEF---FKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-CCT---TSEEEEEEECGGGSCHHH---HHHHHHH---HHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-Hhc---CCCcEEEEECccCCCHHH---HHHHHHH---HHH
Confidence 3888644 3456677899999999999998654432111 111 899999999999986321 1111111 011
Q ss_pred cCCCCcEEEeeccCCCChhHHHHHH
Q psy1758 202 YGGASPFISISAKTGVGINKLLENI 226 (1527)
Q Consensus 202 ~~~~~~v~~iSAktg~gI~eL~~~l 226 (1527)
. ..++ .+||++|.|+++|++.+
T Consensus 74 ~--g~~v-~iSa~~~~gi~~L~~~l 95 (262)
T 3cnl_A 74 Q--GKRV-ITTHKGEPRKVLLKKLS 95 (262)
T ss_dssp T--TCCE-EECCTTSCHHHHHHHHC
T ss_pred c--CCeE-EEECCCCcCHHHHHHHH
Confidence 1 2467 99999999999998876
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.002 Score=72.89 Aligned_cols=103 Identities=14% Similarity=0.008 Sum_probs=70.7
Q ss_pred CCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHH----HH---HH-cCCccEEEEec-cCCCCCChhhhHHHHHHH
Q psy1758 994 GHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTR----KA---LK-LGFKPIVVVNK-IDRSNARPEWVVDATFDL 1064 (1527)
Q Consensus 994 Gh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~----~~---~~-~glp~IvviNK-iD~~~a~~~~v~~~~~~~ 1064 (1527)
|+..+...+..++..+|++|+|||+++......+.-+. .+ .. .+.|++|+.|| -|.+++-.. .++.+.
T Consensus 196 GQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~---~EI~e~ 272 (312)
T 3l2o_B 196 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC---FYLAHE 272 (312)
T ss_dssp -CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCH---HHHHHH
T ss_pred CHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCH---HHHHHH
Confidence 67778889999999999999999998753222333221 12 22 58999999997 588776422 233332
Q ss_pred HhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1065 FDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1065 ~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+. +... ...+-+..+||++|. |+.+-++++.+.+.
T Consensus 273 L~-L~~l--~r~W~Iq~csA~tGe----------GL~EGldWL~~~l~ 307 (312)
T 3l2o_B 273 LH-LNLL--NHPWLVQDTEAETLT----------GFLNGIEWILEEVE 307 (312)
T ss_dssp TT-GGGG--CSCEEEEEEETTTCT----------THHHHHHHHHHHSC
T ss_pred cC-CccC--CCcEEEEecccCCCc----------CHHHHHHHHHHHHH
Confidence 21 2111 235668999999998 99999999988774
|
| >3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0024 Score=69.75 Aligned_cols=82 Identities=17% Similarity=0.245 Sum_probs=64.5
Q ss_pred CCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEe--cCCCCCC
Q psy1758 238 PVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEI--QGLTKVP 313 (1527)
Q Consensus 238 ~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~~ 313 (1527)
+.+.|++..|.+.+. +.|++++++|.+|++++||.|.+.+ ...+|++|+.++ +.+.+|.||+.+.+ .|++...
T Consensus 2 ~~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~-~~~~~A~aGd~V~l~L~gi~~~d 78 (204)
T 3e1y_E 2 PLGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDD-VETDTVAPGENLKIRLKGIEEEE 78 (204)
T ss_dssp -----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSSS-SCBSEECTTSEEEEEEEESSSSC
T ss_pred CCCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEECC-EEeEEECCCCEEEEEEcCCCHHH
Confidence 356788999998876 7899999999999999999998865 468999997665 57899999998887 7777554
Q ss_pred -CCCCeEEEe
Q psy1758 314 -FSGEELFVI 322 (1527)
Q Consensus 314 -~~G~~~~~~ 322 (1527)
.+|+++..-
T Consensus 79 i~rG~vl~~~ 88 (204)
T 3e1y_E 79 ILPGFILCDP 88 (204)
T ss_dssp CCTTCEEBCS
T ss_pred CccceEEECC
Confidence 789977643
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.002 Score=69.87 Aligned_cols=64 Identities=9% Similarity=0.034 Sum_probs=52.4
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcC-----CccEEEEeccCCC
Q psy1758 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLG-----FKPIVVVNKIDRS 1050 (1527)
Q Consensus 984 ~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~g-----lp~IvviNKiD~~ 1050 (1527)
.|.+.|||||+.. ......++..+|.+|+++.+.... ..+...++.+.+.+ ++..+|+|++|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 5789999999976 556778899999999999998776 77777777777553 5778899999954
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0018 Score=82.53 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=39.6
Q ss_pred eEEEEEeCCCCCC--c-------hHHHHHHHHh-----cCEEEEEEeCCCCCChhH-HHHHHHHHHcCCccEEEEeccCC
Q psy1758 985 TRINIIDTPGHAD--F-------GGEVERILSM-----VDNVLLLIDAVEGPMPQT-RFVTRKALKLGFKPIVVVNKIDR 1049 (1527)
Q Consensus 985 ~~iniiDTPGh~d--f-------~~ev~~~l~~-----aD~ailVVDa~~G~~~qt-~~~~~~~~~~glp~IvviNKiD~ 1049 (1527)
-.+.|+|.||... + ...+...+.. ...+++++++......+. ..+++.+...|.+.|+|+||.|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 4689999998543 1 1233333322 256677777665443222 33444444458899999999998
Q ss_pred CCC
Q psy1758 1050 SNA 1052 (1527)
Q Consensus 1050 ~~a 1052 (1527)
...
T Consensus 227 v~~ 229 (608)
T 3szr_A 227 VDK 229 (608)
T ss_dssp SSS
T ss_pred cCc
Confidence 754
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0043 Score=71.98 Aligned_cols=127 Identities=20% Similarity=0.163 Sum_probs=64.9
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhc----cCccccccccccee--cchh-hhhcccceeEeeeeEE----------E---
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQ----SGTFRKNQNINARI--MDSN-EIEKERGITIFSKNCS----------I--- 980 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~----~g~~~~~~~~~~~~--~D~~-~~E~erGiTi~~~~~~----------~--- 980 (1527)
....|+|+|+.|+|||||+..|... .|.+.-.+....+. .+.. ...+.+++.+...... +
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999754 12111000000000 0000 0001123322111100 0
Q ss_pred EecCeEEEEEeCCCCCCchHHHHH-------HH-----HhcCEEEEEEeCCCCCChhHHHHHH-HHHHcCCccEEEEecc
Q psy1758 981 EYNGTRINIIDTPGHADFGGEVER-------IL-----SMVDNVLLLIDAVEGPMPQTRFVTR-KALKLGFKPIVVVNKI 1047 (1527)
Q Consensus 981 ~~~~~~iniiDTPGh~df~~ev~~-------~l-----~~aD~ailVVDa~~G~~~qt~~~~~-~~~~~glp~IvviNKi 1047 (1527)
...++.+.++||+|..+....... ++ ...+.+++++|+..+.. ....+. .....++ .++++||.
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~-t~iivTh~ 257 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGL-TGVIVTKL 257 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCC-SEEEEECT
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCC-cEEEEECC
Confidence 113456779999997553322211 11 23678899999987632 222222 2233454 57889999
Q ss_pred CCC
Q psy1758 1048 DRS 1050 (1527)
Q Consensus 1048 D~~ 1050 (1527)
|..
T Consensus 258 d~~ 260 (304)
T 1rj9_A 258 DGT 260 (304)
T ss_dssp TSS
T ss_pred ccc
Confidence 864
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0023 Score=78.33 Aligned_cols=128 Identities=19% Similarity=0.236 Sum_probs=66.4
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhc----cCcccccccccceec--chh-hhhcccceeEeeeeEEEE-----------
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQ----SGTFRKNQNINARIM--DSN-EIEKERGITIFSKNCSIE----------- 981 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~----~g~~~~~~~~~~~~~--D~~-~~E~erGiTi~~~~~~~~----------- 981 (1527)
.....|+|+|..|+|||||+..|.+. .|.+.-.+....+.. +.. .....+++.+........
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 34567999999999999999999754 222211000000000 000 011223443332211100
Q ss_pred --ecCeEEEEEeCCCCCCchHHH----H---HHHH-----hcCEEEEEEeCCCCCChhHHHHHHHHH-HcCCccEEEEec
Q psy1758 982 --YNGTRINIIDTPGHADFGGEV----E---RILS-----MVDNVLLLIDAVEGPMPQTRFVTRKAL-KLGFKPIVVVNK 1046 (1527)
Q Consensus 982 --~~~~~iniiDTPGh~df~~ev----~---~~l~-----~aD~ailVVDa~~G~~~qt~~~~~~~~-~~glp~IvviNK 1046 (1527)
..++.+.||||+|........ . +.++ ..+-++||+|++.|- .....++... ..++ ..+++||
T Consensus 371 a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq--~al~~ak~f~~~~~i-tgvIlTK 447 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAVGL-TGITLTK 447 (503)
T ss_dssp HHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH--HHHHHHHHHHHHTCC-SEEEEEC
T ss_pred HHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH--HHHHHHHHHHhhcCC-CEEEEEc
Confidence 145678899999976543322 1 2222 146789999998762 1112222222 2343 3578999
Q ss_pred cCCC
Q psy1758 1047 IDRS 1050 (1527)
Q Consensus 1047 iD~~ 1050 (1527)
+|..
T Consensus 448 LD~t 451 (503)
T 2yhs_A 448 LDGT 451 (503)
T ss_dssp GGGC
T ss_pred CCCc
Confidence 9963
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0026 Score=74.67 Aligned_cols=143 Identities=14% Similarity=0.145 Sum_probs=76.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccc--------cC---------------CceeEEEEEEEE------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFS--------EA---------------GGITQHIGAYNV------------ 111 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~--------~~---------------~giT~~~~~~~~------------ 111 (1527)
.++-.++++|++|+|||||+..|.+.....+ .. -++..-......
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 3566899999999999999998864311100 00 010000000000
Q ss_pred -EeCCeEEEEEeCCChh----hHHHHHHh--hccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch
Q psy1758 112 -VTNHGSITFLDTPGHE----AFTAMRAR--GAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN 184 (1527)
Q Consensus 112 -~~~~~~i~~iDTPG~e----~f~~~~~~--~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~ 184 (1527)
...+..+.++||+|.. .+...... .+-..|-.++++|+..+ .+..+.+..+...--..++++||+|-.. .
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilTKlD~~a-~ 283 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILTKLDADA-R 283 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEECGGGCS-C
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEeCcCCcc-c
Confidence 0013457789999942 22222111 12347899999998875 2444444444432223578899999633 2
Q ss_pred hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHH
Q psy1758 185 LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223 (1527)
Q Consensus 185 ~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~ 223 (1527)
........... ..|+..++ +|+++++|.
T Consensus 284 ~G~~l~~~~~~---------~~pi~~i~--~Ge~v~dl~ 311 (328)
T 3e70_C 284 GGAALSISYVI---------DAPILFVG--VGQGYDDLR 311 (328)
T ss_dssp CHHHHHHHHHH---------TCCEEEEE--CSSSTTCEE
T ss_pred hhHHHHHHHHH---------CCCEEEEe--CCCCccccc
Confidence 22222211111 14777777 788887653
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0022 Score=77.71 Aligned_cols=125 Identities=19% Similarity=0.193 Sum_probs=67.1
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCccccccccc---ceecchhh------hhcccceeEeeeeE----------EE-
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN---ARIMDSNE------IEKERGITIFSKNC----------SI- 980 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~---~~~~D~~~------~E~erGiTi~~~~~----------~~- 980 (1527)
....|+++|+.|+||||++..|...... ..+.+. ........ .....|+.+.+... .+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~ 174 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHH
Confidence 4567899999999999999999754111 011110 00000000 11123443332210 01
Q ss_pred --EecCeEEEEEeCCCCCCchHHHH----HH--HHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCc-cEEEEeccCCC
Q psy1758 981 --EYNGTRINIIDTPGHADFGGEVE----RI--LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVNKIDRS 1050 (1527)
Q Consensus 981 --~~~~~~iniiDTPGh~df~~ev~----~~--l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp-~IvviNKiD~~ 1050 (1527)
...++.+.||||||......... .. +..+|.++||+|+..| + ........... .++ .-+|+||+|..
T Consensus 175 ~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg-q-~av~~a~~f~~-~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 175 KARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG-Q-EALSVARAFDE-KVGVTGLVLTKLDGD 250 (425)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT-T-HHHHHHHHHHH-HTCCCEEEEESGGGC
T ss_pred HHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch-H-HHHHHHHHHHh-cCCceEEEEeCcCCc
Confidence 12567899999999765432222 11 2358999999999865 1 22222222121 344 45789999974
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0029 Score=74.02 Aligned_cols=124 Identities=20% Similarity=0.209 Sum_probs=67.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchh---------hhhc---ccceeEe-eeeE--------
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSN---------EIEK---ERGITIF-SKNC-------- 978 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~---------~~E~---erGiTi~-~~~~-------- 978 (1527)
.....|+++|..|+||||++..|...... ..+.+--.-.|.. ..-. ..|+.+. +...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~ 180 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVV 180 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHH
Confidence 34568999999999999999998754110 0111100000100 0001 3344443 1110
Q ss_pred --EEE---ecCeEEEEEeCCCCCCchHHHHHHH------------HhcCEEEEEEeCCCCCChhHHHHHHHHHHc--CCc
Q psy1758 979 --SIE---YNGTRINIIDTPGHADFGGEVERIL------------SMVDNVLLLIDAVEGPMPQTRFVTRKALKL--GFK 1039 (1527)
Q Consensus 979 --~~~---~~~~~iniiDTPGh~df~~ev~~~l------------~~aD~ailVVDa~~G~~~qt~~~~~~~~~~--glp 1039 (1527)
.+. ..++.+.||||||...........+ ..+|.+++|+|+..+ ..+ +..+..+ .++
T Consensus 181 ~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~---l~~~~~~~~~~~ 255 (320)
T 1zu4_A 181 FDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNG---VIQAEEFSKVAD 255 (320)
T ss_dssp HHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHH---HHHHHHHTTTSC
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHH---HHHHHHHhhcCC
Confidence 000 1478899999999766543322222 137899999999854 222 2223332 244
Q ss_pred c-EEEEeccCCC
Q psy1758 1040 P-IVVVNKIDRS 1050 (1527)
Q Consensus 1040 ~-IvviNKiD~~ 1050 (1527)
+ =+|+||+|..
T Consensus 256 i~GvVltk~d~~ 267 (320)
T 1zu4_A 256 VSGIILTKMDST 267 (320)
T ss_dssp CCEEEEECGGGC
T ss_pred CcEEEEeCCCCC
Confidence 4 3789999964
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0031 Score=73.17 Aligned_cols=85 Identities=15% Similarity=0.218 Sum_probs=59.0
Q ss_pred HHHhcCEEEEEEeCCCCCChhH--HHHHHHHHHcCCccEEEEeccCCCCCChh-hhHHHHHHHHhhhcccccccCCcEEE
Q psy1758 1005 ILSMVDNVLLLIDAVEGPMPQT--RFVTRKALKLGFKPIVVVNKIDRSNARPE-WVVDATFDLFDKLCATEEQLDFPVIY 1081 (1527)
Q Consensus 1005 ~l~~aD~ailVVDa~~G~~~qt--~~~~~~~~~~glp~IvviNKiD~~~a~~~-~v~~~~~~~~~~l~~~~~~~~~pvi~ 1081 (1527)
.+..+|.+++|+|+.++..... ...+..+...++|+++|+||+|+.+.... +.++++.+.+..+ .+++++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~-------g~~v~~ 155 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI-------GYDVYL 155 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH-------TCCEEE
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC-------CCeEEE
Confidence 5788999999999997655543 23334445679999999999999754210 2345555555333 357999
Q ss_pred eccccCCcCCCcccccCCChhHHHH
Q psy1758 1082 TSALHGYANENSKARQGNMIPLFEA 1106 (1527)
Q Consensus 1082 ~SA~~g~~~~~~~~~~~gi~~Ll~~ 1106 (1527)
+||.+|. |++.|++.
T Consensus 156 ~sa~~~~----------g~~~L~~~ 170 (307)
T 1t9h_A 156 TSSKDQD----------SLADIIPH 170 (307)
T ss_dssp CCHHHHT----------TCTTTGGG
T ss_pred EecCCCC----------CHHHHHhh
Confidence 9999997 77666543
|
| >1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.012 Score=57.15 Aligned_cols=78 Identities=22% Similarity=0.168 Sum_probs=53.5
Q ss_pred CCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ecc
Q psy1758 1120 NPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TGI 1197 (1527)
Q Consensus 1120 ~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~gl 1197 (1527)
.|-.+.+..+..--| |.+..|||.+|+|++|+.| +. +. ...+|.+|.. +..++++|.|||.|++ .|.
T Consensus 33 ~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg--~~-~vg~VkSIE~----~~e~v~eA~~GdnVai~Ikg~ 101 (116)
T 1xe1_A 33 PAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KG--PS-GIGGIVRIER----NREKVEFAIAGDRIGISIEGK 101 (116)
T ss_dssp CSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---EC--SS-CEEEEEEEEE----TTEEESEEETTCEEEEEEESC
T ss_pred CcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CC--Cc-eEEEEEEEEE----CCcCcCCcCCCCEEEEEEECC
Confidence 355555544222122 7789999999999999998 44 10 2456777664 3468999999999976 454
Q ss_pred e-ecccCCeeeC
Q psy1758 1198 E-EICIGSTICD 1208 (1527)
Q Consensus 1198 ~-~~~iGdTi~~ 1208 (1527)
. +++.||++..
T Consensus 102 ~~~I~~GdVLyv 113 (116)
T 1xe1_A 102 IGKVKKGDVLEI 113 (116)
T ss_dssp CCCCCTTCEEEE
T ss_pred ccccCCCcEEEE
Confidence 3 6777888753
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0042 Score=71.88 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=20.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIR 90 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~ 90 (1527)
.++..|+++|++|+||||++..|.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 356799999999999999998774
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.004 Score=72.23 Aligned_cols=87 Identities=15% Similarity=0.154 Sum_probs=57.9
Q ss_pred hhccccCEEEEEEeCCCCCcHHH--HHHHHHHHHcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEe
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQT--REAIAHAKISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt--~e~i~~~~~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
..+.++|.+++|+|+.++..... ...+..+...++|.++|+||+|+.+.... .....+... ....+ .+++.+
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~---y~~~g--~~v~~~ 156 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAED---YRNIG--YDVYLT 156 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHH---HHHHT--CCEEEC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHH---HHhCC--CeEEEE
Confidence 35789999999999997554333 22333445678999999999999864320 111222111 11112 489999
Q ss_pred eccCCCChhHHHHHH
Q psy1758 212 SAKTGVGINKLLENI 226 (1527)
Q Consensus 212 SAktg~gI~eL~~~l 226 (1527)
||++|.|+++|++..
T Consensus 157 sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 157 SSKDQDSLADIIPHF 171 (307)
T ss_dssp CHHHHTTCTTTGGGG
T ss_pred ecCCCCCHHHHHhhc
Confidence 999999999987654
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0067 Score=73.87 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=39.9
Q ss_pred CCeEEEEEeCCChhhH----H-HHHH-hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCC
Q psy1758 114 NHGSITFLDTPGHEAF----T-AMRA-RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKL 181 (1527)
Q Consensus 114 ~~~~i~~iDTPG~e~f----~-~~~~-~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~ 181 (1527)
.++.+.|+||||.-.+ . .+.. ..+..+|.+++|+|+..+. .....+.... ..++ .-+++||+|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~-~~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFN-EALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHH-HHSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHh-ccCCCeEEEEecCCCC
Confidence 4567999999995332 1 1111 2245789999999998762 2233333222 2355 35799999964
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0031 Score=72.99 Aligned_cols=125 Identities=10% Similarity=0.059 Sum_probs=63.1
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhc----cCc-cc--ccccccceecchhh-hhcccceeEeeee-------EEEEecCeE
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQ----SGT-FR--KNQNINARIMDSNE-IEKERGITIFSKN-------CSIEYNGTR 986 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~----~g~-~~--~~~~~~~~~~D~~~-~E~erGiTi~~~~-------~~~~~~~~~ 986 (1527)
...|+++|+.|+||||++..|... .|. +. ..........+... .....|+.+.... .--...++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 357999999999999999999743 221 00 00000000000000 0011222211100 000125678
Q ss_pred EEEEeCCCCCCchHHHH----HHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcC-Cc-cEEEEeccCCC
Q psy1758 987 INIIDTPGHADFGGEVE----RILS--MVDNVLLLIDAVEGPMPQTRFVTRKALKLG-FK-PIVVVNKIDRS 1050 (1527)
Q Consensus 987 iniiDTPGh~df~~ev~----~~l~--~aD~ailVVDa~~G~~~qt~~~~~~~~~~g-lp-~IvviNKiD~~ 1050 (1527)
+.|+||||......... ..+. ..|.+++|+|++.+. + .+.+.+.... ++ .-+++||+|..
T Consensus 185 lvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~--~--~~~~~~~~~~~l~~~giVltk~D~~ 252 (296)
T 2px0_A 185 HVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY--E--DMKHIVKRFSSVPVNQYIFTKIDET 252 (296)
T ss_dssp EEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH--H--HHHHHTTTTSSSCCCEEEEECTTTC
T ss_pred EEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH--H--HHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 99999999766543322 2222 257889999998652 1 1222222221 22 24667999975
|
| >1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0032 Score=69.98 Aligned_cols=70 Identities=21% Similarity=0.347 Sum_probs=55.9
Q ss_pred eeEEEEeCCCCCCHH-------HHHHHHHHHhc-cccccccCCCCCCCeEEEEEEecccc--ccccccc--CCCcEEEEE
Q psy1758 663 HGVLLLDKPYGLSSN-------NALKKIKYLLN-AKKVGYTGTLDPFATGLLPLCFGEAT--KFSNYLS--EADKYYEAI 730 (1527)
Q Consensus 663 ~G~~~v~Kp~g~ts~-------~~~~~~~~~~~-~~kvgh~gtLdp~a~Gvl~~~~g~~t--k~~~~~~--~~~K~Y~~~ 730 (1527)
+.+++||||+|+.+| .++..++..++ ..+++..|.||..+||||+++-+..+ +|...+. .-.|+|.|.
T Consensus 9 ~~~lvvnKP~G~~~~~~~~~~~~l~~~l~~~~~~~~~~~~VhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~ 88 (228)
T 1v9k_A 9 DHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 88 (228)
T ss_dssp SSEEEEEECTTSCSSCCSSSBCCHHHHHHHHSTTCSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCEEEEECCCCCeEecCCChHHHHHHHHHHHcCCCCccceEecCCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEEEEE
Confidence 458999999999987 47888877665 35789999999999999999987653 3455443 468999998
Q ss_pred EE
Q psy1758 731 IH 732 (1527)
Q Consensus 731 ~~ 732 (1527)
+.
T Consensus 89 v~ 90 (228)
T 1v9k_A 89 VR 90 (228)
T ss_dssp EE
T ss_pred Ee
Confidence 86
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0061 Score=74.16 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=21.7
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
+-..|+|+|.+++|||||+|+|.+.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4467999999999999999999753
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0039 Score=72.38 Aligned_cols=147 Identities=17% Similarity=0.213 Sum_probs=74.0
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchh---------hhhcccceeEeeeeE----------EE-
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSN---------EIEKERGITIFSKNC----------SI- 980 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~---------~~E~erGiTi~~~~~----------~~- 980 (1527)
....|+|+|++|+||||++..|...... ..+.+.---.|.. ..-...|+.+..... .+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 4567999999999999999999754110 0111100000000 001122333321100 00
Q ss_pred --EecCeEEEEEeCCCCCCchHHHHHH-------H-----HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCc-cEEEEe
Q psy1758 981 --EYNGTRINIIDTPGHADFGGEVERI-------L-----SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFK-PIVVVN 1045 (1527)
Q Consensus 981 --~~~~~~iniiDTPGh~df~~ev~~~-------l-----~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp-~IvviN 1045 (1527)
...++.+.|+||||.......+... + ..+|.++||+|+..+ .......+...+ ..+ .-+|+|
T Consensus 181 ~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~-~~~i~gvVlT 257 (306)
T 1vma_A 181 HALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKE-AVNVTGIILT 257 (306)
T ss_dssp HHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHH-HSCCCEEEEE
T ss_pred HHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHh-cCCCCEEEEe
Confidence 1246789999999975544433221 1 137899999999743 111111222222 133 346789
Q ss_pred ccCCCCCChhhhHHHHHHHHhhhcccccccCCcEEEecc
Q psy1758 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSA 1084 (1527)
Q Consensus 1046 KiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA 1084 (1527)
|+|.. +....+++-... ...|+.|++.
T Consensus 258 k~D~~-~~gG~~l~~~~~-----------~~~Pi~~i~~ 284 (306)
T 1vma_A 258 KLDGT-AKGGITLAIARE-----------LGIPIKFIGV 284 (306)
T ss_dssp CGGGC-SCTTHHHHHHHH-----------HCCCEEEEEC
T ss_pred CCCCc-cchHHHHHHHHH-----------HCCCEEEEeC
Confidence 99974 333333322211 2458888754
|
| >1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.016 Score=56.18 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=52.8
Q ss_pred eEeEEEeEEEEcCCCCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccccchhhh
Q psy1758 473 LGLAEIRQVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLSRIEN 547 (1527)
Q Consensus 473 ~g~a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~r~~~ 547 (1527)
.|.-.|+.+|..-=.+.++| +|..|.|+.|.++ +++- ..|+|.||+..+++|+++.+|+++++.++...
T Consensus 34 P~k~~ilp~~~~vFgpvivG-rVe~G~LK~G~~V----Pg~~-~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~ 102 (116)
T 1xe1_A 34 AGKVVVEEVVNIMGKDVIIG-TVESGMIGVGFKV----KGPS-GIGGIVRIERNREKVEFAIAGDRIGISIEGKI 102 (116)
T ss_dssp SEEEEEEEEEEETTEEEEEE-EEEEEEEETTCEE----ECSS-CEEEEEEEEETTEEESEEETTCEEEEEEESCC
T ss_pred cEEEEEEecCCeEECCeeEE-EEeEEEEcCCCCc----CCCc-eEEEEEEEEECCcCcCCcCCCCEEEEEEECCc
Confidence 35556666322211347889 9999999999997 3331 36889999999999999999999999998743
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.017 Score=70.20 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=22.9
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhc
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQ 945 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~ 945 (1527)
.+.--|+|+|.+++|||||+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 35567999999999999999999975
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.023 Score=65.93 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRK 91 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~ 91 (1527)
++-.|+++|++|+||||++..|..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 445789999999999999987753
|
| >2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0055 Score=67.97 Aligned_cols=66 Identities=24% Similarity=0.294 Sum_probs=46.1
Q ss_pred eEEEEeCCCCCCHHH-------HHHHHHHHhccccccccCCCCCCCeEEEEEEeccc--ccccccccCCCcEEEEEEE
Q psy1758 664 GVLLLDKPYGLSSNN-------ALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEA--TKFSNYLSEADKYYEAIIH 732 (1527)
Q Consensus 664 G~~~v~Kp~g~ts~~-------~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~--tk~~~~~~~~~K~Y~~~~~ 732 (1527)
=+|++|||+|+.|+- +++.+.. ..++...|.||-.+||+|+++-... .+|..--....|+|.+.+.
T Consensus 15 ~~lvlnKPaG~vs~~~~~~~~tv~dll~~---~~rl~~VgRLD~dTSGLLLlT~dg~~a~~L~~p~~~v~K~Y~a~V~ 89 (237)
T 2gml_A 15 VLIALNKPVGIVSTTEDGERDNIVDFVNH---SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVD 89 (237)
T ss_dssp CEEEEEECTTCBCCSSSSCSSBHHHHSCC---SSCCEEESCCCTTCEEEEEEESCHHHHHHHHHHHHHSCEEEEEEES
T ss_pred EEEEEECCCCCEeCCCCCCCCCHHHHhhc---cCCeeEecCCCCCCeeEEEEEcCHHHHHHHhCccCCCCEEEEEEEc
Confidence 379999999996652 3443321 2468899999999999999886432 2233222257899999875
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.054 Score=58.35 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=48.7
Q ss_pred CeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCEEEEEEcccCCc
Q psy1758 115 HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKIS-----GVPLIVAINKIDKLD 182 (1527)
Q Consensus 115 ~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~-----~vpiIvviNKiDl~~ 182 (1527)
.+.+.++|||+.. .......+..+|.+++++..+... ......+..+... +.++.+|+|++|...
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 3579999999865 234445667799999999998866 6677777766544 467899999999644
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.03 Score=68.59 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=21.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRK 91 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~ 91 (1527)
.++-.++|+|..|+|||||+..|.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 3456899999999999999998854
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=95.33 E-value=0.041 Score=65.02 Aligned_cols=87 Identities=20% Similarity=0.162 Sum_probs=53.5
Q ss_pred hhccccCEEEEEEeCCCCCcHHH-HHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeec
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQT-REAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt-~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSA 213 (1527)
..+.++|.+++|.+..-...... ...+..+...++|.++|+||+|+.+.........+... .... .++++.+||
T Consensus 126 ~i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~---y~~~--G~~v~~~Sa 200 (358)
T 2rcn_A 126 PIAANIDQIVIVSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDI---YRNI--GYRVLMVSS 200 (358)
T ss_dssp EEEECCCEEEEEEESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHH---HHTT--TCCEEECBT
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHH---HHhC--CCcEEEEec
Confidence 34688999998765432222222 22333445678999999999999864321111122111 1111 257999999
Q ss_pred cCCCChhHHHHHH
Q psy1758 214 KTGVGINKLLENI 226 (1527)
Q Consensus 214 ktg~gI~eL~~~l 226 (1527)
++|.|+++|...+
T Consensus 201 ~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 201 HTQDGLKPLEEAL 213 (358)
T ss_dssp TTTBTHHHHHHHH
T ss_pred CCCcCHHHHHHhc
Confidence 9999999887643
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.011 Score=68.18 Aligned_cols=127 Identities=17% Similarity=0.135 Sum_probs=65.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhcc----Cccccccc-cc-ceecchh-hhhcccceeEeeeeE-----E--------E
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQS----GTFRKNQN-IN-ARIMDSN-EIEKERGITIFSKNC-----S--------I 980 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~----g~~~~~~~-~~-~~~~D~~-~~E~erGiTi~~~~~-----~--------~ 980 (1527)
....++++|+.|+||||++..|.... +.+.-.+. .. ....+.. ....+.|+.+.+... . .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999987541 11100000 00 0000000 011122333332100 0 0
Q ss_pred EecCeEEEEEeCCCCCCchHHHHH----HH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCC
Q psy1758 981 EYNGTRINIIDTPGHADFGGEVER----IL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRS 1050 (1527)
Q Consensus 981 ~~~~~~iniiDTPGh~df~~ev~~----~l--~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~ 1050 (1527)
...++.+.|+||||.......... .. ..+|.+++|+|+..+ ..+....+.... .+++ -+|+||+|..
T Consensus 177 ~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~ 250 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGD 250 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGC
T ss_pred HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCC
Confidence 014688999999986544322222 11 258999999998753 222222222221 2443 4789999975
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.033 Score=65.00 Aligned_cols=65 Identities=17% Similarity=0.145 Sum_probs=38.0
Q ss_pred CeEEEEEeCCChhhHH----HHHH---hh-----ccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCC
Q psy1758 115 HGSITFLDTPGHEAFT----AMRA---RG-----AKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKL 181 (1527)
Q Consensus 115 ~~~i~~iDTPG~e~f~----~~~~---~~-----~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~ 181 (1527)
++.+.|+||||.-... .... +. ...+|.+++|+++..+ ....+.+.... ...+ .=+++||+|..
T Consensus 191 ~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~-~~~~i~GvVltk~d~~ 267 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFS-KVADVSGIILTKMDST 267 (320)
T ss_dssp TCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHT-TTSCCCEEEEECGGGC
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHh-hcCCCcEEEEeCCCCC
Confidence 4579999999943321 1111 11 1347999999999854 33333333322 1234 34789999964
Q ss_pred c
Q psy1758 182 D 182 (1527)
Q Consensus 182 ~ 182 (1527)
.
T Consensus 268 ~ 268 (320)
T 1zu4_A 268 S 268 (320)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=95.00 E-value=0.046 Score=64.57 Aligned_cols=83 Identities=23% Similarity=0.371 Sum_probs=52.9
Q ss_pred HHHhcCEEEEEEeCCCCCChhHHH---HHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEEE
Q psy1758 1005 ILSMVDNVLLLIDAVEGPMPQTRF---VTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIY 1081 (1527)
Q Consensus 1005 ~l~~aD~ailVVDa~~G~~~qt~~---~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~ 1081 (1527)
.+..+|.+++| ||.. +...... .+..+...++|+++|+||+|+.+....+.+++....|. ...+|+++
T Consensus 127 i~anvD~v~iv-~a~~-P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~-------~~G~~v~~ 197 (358)
T 2rcn_A 127 IAANIDQIVIV-SAIL-PELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR-------NIGYRVLM 197 (358)
T ss_dssp EEECCCEEEEE-EEST-TTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHH-------TTTCCEEE
T ss_pred HHhcCCEEEEE-EeCC-CCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHH-------hCCCcEEE
Confidence 35789999866 5655 3333333 33445567999999999999975321111333333332 23568999
Q ss_pred eccccCCcCCCcccccCCChhHHHH
Q psy1758 1082 TSALHGYANENSKARQGNMIPLFEA 1106 (1527)
Q Consensus 1082 ~SA~~g~~~~~~~~~~~gi~~Ll~~ 1106 (1527)
+||.+|. |++.|...
T Consensus 198 ~Sa~~~~----------gl~~L~~~ 212 (358)
T 2rcn_A 198 VSSHTQD----------GLKPLEEA 212 (358)
T ss_dssp CBTTTTB----------THHHHHHH
T ss_pred EecCCCc----------CHHHHHHh
Confidence 9999998 77766654
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=94.64 E-value=0.021 Score=69.09 Aligned_cols=65 Identities=20% Similarity=0.183 Sum_probs=38.7
Q ss_pred CCeEEEEEeCCChhh----HHHHHH--hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCC
Q psy1758 114 NHGSITFLDTPGHEA----FTAMRA--RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKL 181 (1527)
Q Consensus 114 ~~~~i~~iDTPG~e~----f~~~~~--~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~ 181 (1527)
.++.+.|+||||.-. ...... ..+..+|.+++|+|+..+ ......+..... .++ .-+++||+|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~-~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHH-HTCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHh-cCCceEEEEeCcCCc
Confidence 345799999999422 111111 122358999999999865 233333333322 244 56789999964
|
| >1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5 | Back alignment and structure |
|---|
Probab=94.43 E-value=0.0094 Score=66.86 Aligned_cols=67 Identities=24% Similarity=0.335 Sum_probs=49.4
Q ss_pred EEEEeCCCCCCHH-------HHHHHHHHHhccccccccCCCCCCCeEEEEEEecc--cccccccccCCCcEEEEEEE
Q psy1758 665 VLLLDKPYGLSSN-------NALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGE--ATKFSNYLSEADKYYEAIIH 732 (1527)
Q Consensus 665 ~~~v~Kp~g~ts~-------~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~--~tk~~~~~~~~~K~Y~~~~~ 732 (1527)
+++||||+|+.++ .+.+.++..+. .+++..|.||..+||||+++-+. +.+++.--..-.|+|.|.+.
T Consensus 64 ~lvvnKP~G~~~~~~~~~~~tl~~~l~~~~~-~~~~~vhRLD~~TsGlll~ak~~~~a~~l~~~~~~v~K~Y~a~v~ 139 (243)
T 1vio_A 64 YFMLNKPQGCVCSNDDGDYPTIYQFFDYPLA-GKLHSAGRLDVDTTGLVLLTDDGQWSHRITSPKHHCEKTYLVTLA 139 (243)
T ss_dssp EEEEEECTTCBSSCCC--CCBGGGGSCTTGG-GGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEES
T ss_pred EEEEECCCCCEeCCCCCCCCcHHHHHhHHhc-CCEeEccCCCCCCeEEEEEEECHHHHHHHhCCCCCCCEEEEEEEe
Confidence 8999999999887 23444433322 36889999999999999999875 34444433357899999875
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.087 Score=60.96 Aligned_cols=133 Identities=19% Similarity=0.211 Sum_probs=70.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhc----cCcccccccccceecchh-----h-hhcccceeEeeeeEE-EE--------
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQ----SGTFRKNQNINARIMDSN-----E-IEKERGITIFSKNCS-IE-------- 981 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~----~g~~~~~~~~~~~~~D~~-----~-~E~erGiTi~~~~~~-~~-------- 981 (1527)
....++++|+.|+|||||+..|.+. .|.+.-.+. ...... . .-..+++.+...... ..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~---d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~ 175 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG---DTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKA 175 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC---CCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEee---cccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHH
Confidence 4567999999999999999999764 222111000 000000 0 001234444332221 10
Q ss_pred -----ecCeEEEEEeCCCCCCchHHHHH-------HH-----HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEE
Q psy1758 982 -----YNGTRINIIDTPGHADFGGEVER-------IL-----SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVV 1044 (1527)
Q Consensus 982 -----~~~~~iniiDTPGh~df~~ev~~-------~l-----~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~Ivvi 1044 (1527)
..++...++||.|..++...... ++ ...+-++||+|++.|..+... ........++ .++++
T Consensus 176 l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~-~~~~~~~~g~-t~iii 253 (302)
T 3b9q_A 176 VKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGI-TGLIL 253 (302)
T ss_dssp HHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCC-CEEEE
T ss_pred HHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH-HHHHHHhcCC-CEEEE
Confidence 12344678999997664432221 11 235677999998877655433 2222234454 46778
Q ss_pred eccCCCCCChhhhHH
Q psy1758 1045 NKIDRSNARPEWVVD 1059 (1527)
Q Consensus 1045 NKiD~~~a~~~~v~~ 1059 (1527)
+|+|-. +.....+.
T Consensus 254 ThlD~~-~~~g~~l~ 267 (302)
T 3b9q_A 254 TKLDGS-ARGGCVVS 267 (302)
T ss_dssp ECCSSC-SCTHHHHH
T ss_pred eCCCCC-CccChhee
Confidence 999864 44444433
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.057 Score=62.55 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=21.0
Q ss_pred CCCEEEEEecCCCChhHHHHHHHc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRK 91 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~ 91 (1527)
++-.|+++|++|+|||||++.|.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456899999999999999998853
|
| >1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.011 Score=66.03 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=50.4
Q ss_pred eeEEEEeCCCCCCHHH-------HHHHHHHHhccccccccCCCCCCCeEEEEEEecc--cccccccccCCCcEEEEEEE
Q psy1758 663 HGVLLLDKPYGLSSNN-------ALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGE--ATKFSNYLSEADKYYEAIIH 732 (1527)
Q Consensus 663 ~G~~~v~Kp~g~ts~~-------~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~--~tk~~~~~~~~~K~Y~~~~~ 732 (1527)
+-+++||||+|+.+|. +.+.+...++ .+++..|.||-.+||+|+++-+. +.++..--..-.|+|.|.+.
T Consensus 63 ~~~lvvnKP~G~~~~~~~~~~~tl~~~l~~~~~-~~~~~vhRLD~~TsGlll~ak~~~~~~~l~~~~~~v~K~Y~a~v~ 140 (234)
T 1ksk_A 63 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVA-WKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLE 140 (234)
T ss_dssp CCEEEEEECTTCBSSSSCSSSCBGGGGCCCTTG-GGCEESSCCCTTCEEEEEEESCHHHHHHHHCTTSCCCEEEEEEES
T ss_pred CEEEEEECCCCCEeCCCCCCCCcHHHHhhhhhc-CCeeEcCCCCCCCeeEEEEEcCHHHHHHHhCCCCCCCeEEEEEEc
Confidence 4589999999998763 3444433322 36889999999999999999875 34454433457899999875
|
| >1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.078 Score=50.07 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=63.4
Q ss_pred eEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCC-cCcceeeeEEEeecCceeEeeeeecCCEEEEe--cceec
Q psy1758 1124 LQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDK-PNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GIEEI 1200 (1527)
Q Consensus 1124 ~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~-~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~--gl~~~ 1200 (1527)
+.|-.++..+..|.+|-.+|.+|.++.+..+.+++. |. ..+.++.+|..+. .++.++.+|.-|.|. +..|+
T Consensus 9 AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd--~~vI~eG~i~SLkr~K----ddV~EV~~G~ECGi~l~~~~di 82 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQ--GIVVYEGEIDSLKRYK----DDVREVAQGYECGLTIKNFNDI 82 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECS--SSEEEEEECSEEECSS----SCCSCCBTTCEEEEECTTCSSC
T ss_pred EEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEEC--CEEEEEeEEhhhcccc----cccceECCCcEEEEEEcCcCCC
Confidence 345556666788999999999999999999999986 43 2446788887664 579999999999774 56799
Q ss_pred ccCCeeeC
Q psy1758 1201 CIGSTICD 1208 (1527)
Q Consensus 1201 ~iGdTi~~ 1208 (1527)
+.||.|-.
T Consensus 83 k~GD~Ie~ 90 (99)
T 1d1n_A 83 KEGDVIEA 90 (99)
T ss_dssp SSCSEEEE
T ss_pred CCCCEEEE
Confidence 99999843
|
| >2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.031 Score=61.53 Aligned_cols=70 Identities=21% Similarity=0.351 Sum_probs=53.1
Q ss_pred eeEEEEeCCCCCCHHH---------HHHHHHHHhccccccccCCCCCCCeEEEEEEeccc-c-ccccccc--CCCcEEEE
Q psy1758 663 HGVLLLDKPYGLSSNN---------ALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEA-T-KFSNYLS--EADKYYEA 729 (1527)
Q Consensus 663 ~G~~~v~Kp~g~ts~~---------~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~-t-k~~~~~~--~~~K~Y~~ 729 (1527)
+.+++||||+|+-+|. +++.++..+. +++..|.||-..||+|+++-+.. . +|...+. .-.|+|.|
T Consensus 19 ~~~lvvnKP~G~~~~~~~~~~~~~tl~~~l~~~~~--~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~f~~~~v~K~Y~a 96 (217)
T 2i82_A 19 DHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYP--QAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVA 96 (217)
T ss_dssp SSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHCT--TCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCEEEEECCCCCeEeCCCCCCchhHHHHHHHHHCC--CCceeecCCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEEEE
Confidence 5689999999997652 5666766553 67899999999999999998664 3 3444343 56899999
Q ss_pred EEEECc
Q psy1758 730 IIHLGI 735 (1527)
Q Consensus 730 ~~~~G~ 735 (1527)
.+. |.
T Consensus 97 ~v~-G~ 101 (217)
T 2i82_A 97 RVW-GH 101 (217)
T ss_dssp EEE-SC
T ss_pred EEe-cc
Confidence 876 44
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.048 Score=59.46 Aligned_cols=120 Identities=15% Similarity=0.031 Sum_probs=0.0
Q ss_pred EEEEE-ecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEe----------------------CCeEEEEEeCCCh-
Q psy1758 71 IVTIM-GHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT----------------------NHGSITFLDTPGH- 126 (1527)
Q Consensus 71 ~V~Iv-G~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~----------------------~~~~i~~iDTPG~- 126 (1527)
+|++. +..|+||||+.-.|...-...+ .-.-.|.....-.. ..+.+.++|||+.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g--~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~ 79 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG--ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARP 79 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS--CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC--CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCc
Q ss_pred hhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHc-CCCEEEEEEcccCCc-chhHHHHHHHhh
Q psy1758 127 EAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKIS-GVPLIVAINKIDKLD-INLDRIKQDLIS 194 (1527)
Q Consensus 127 e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~-~vpiIvviNKiDl~~-~~~~~~~~~l~~ 194 (1527)
... .....+..+|.+|+++..+..........+..+... +.++.+++|++|... ....+..+.+.+
T Consensus 80 ~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~l~~ 147 (209)
T 3cwq_A 80 EDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQLLTT 147 (209)
T ss_dssp SSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHHHHHH
T ss_pred CcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCccchHHHHHHHHHHH
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1527 | ||||
| d1sgva2 | 233 | d.265.1.2 (A:3-235) Pseudouridine synthase II TruB | 2e-58 | |
| d1r3ea2 | 228 | d.265.1.2 (A:10-237) Pseudouridine synthase II Tru | 8e-55 | |
| d1d2ea3 | 196 | c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), | 4e-52 | |
| d1d2ea3 | 196 | c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), | 2e-35 | |
| d1k8wa5 | 242 | d.265.1.2 (A:9-250) Pseudouridine synthase II TruB | 6e-52 | |
| d2c78a3 | 204 | c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N | 3e-49 | |
| d2c78a3 | 204 | c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N | 2e-39 | |
| d2ey4a2 | 245 | d.265.1.2 (A:8-252) Pseudouridine synthase II TruB | 3e-44 | |
| d2apoa2 | 230 | d.265.1.2 (A:17-246) Pseudouridine synthase II Tru | 6e-43 | |
| d1f60a3 | 239 | c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N | 3e-39 | |
| d1f60a3 | 239 | c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N | 1e-27 | |
| d2bv3a2 | 276 | c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-t | 4e-39 | |
| d2bv3a2 | 276 | c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-t | 2e-30 | |
| d1jnya3 | 224 | c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N | 1e-38 | |
| d1jnya3 | 224 | c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N | 2e-28 | |
| d1n0ua2 | 341 | c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N- | 4e-36 | |
| d1n0ua2 | 341 | c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N- | 5e-21 | |
| d1zunb3 | 222 | c.37.1.8 (B:16-237) Sulfate adenylate transferase | 9e-29 | |
| d1zunb3 | 222 | c.37.1.8 (B:16-237) Sulfate adenylate transferase | 2e-23 | |
| d1g7sa4 | 227 | c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N- | 4e-28 | |
| d1g7sa4 | 227 | c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N- | 2e-20 | |
| d1r5ba3 | 245 | c.37.1.8 (A:215-459) Eukaryotic peptide chain rele | 7e-27 | |
| d1r5ba3 | 245 | c.37.1.8 (A:215-459) Eukaryotic peptide chain rele | 5e-22 | |
| d2qn6a3 | 205 | c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su | 6e-26 | |
| d2qn6a3 | 205 | c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su | 8e-22 | |
| d1g7sa3 | 131 | c.20.1.1 (A:329-459) Initiation factor IF2/eIF5b, | 2e-23 | |
| d1d1na_ | 99 | b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains | 2e-23 | |
| d1g7sa1 | 101 | b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, | 4e-23 | |
| d1pa4a_ | 96 | d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Myc | 7e-23 | |
| d1josa_ | 100 | d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Hae | 1e-22 | |
| d1yrba1 | 244 | c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09 | 2e-22 | |
| d1yrba1 | 244 | c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09 | 2e-12 | |
| d1kkga_ | 108 | d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Esc | 3e-22 | |
| d2dy1a2 | 267 | c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-t | 2e-20 | |
| d2dy1a2 | 267 | c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-t | 5e-10 | |
| d2e7ga1 | 116 | d.52.7.1 (A:86-201) Ribosome-binding factor A, Rbf | 1e-19 | |
| d2dyja1 | 91 | d.52.7.1 (A:4-94) Ribosome-binding factor A, RbfA | 2e-19 | |
| d1kk1a3 | 195 | c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su | 4e-19 | |
| d1kk1a3 | 195 | c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su | 8e-18 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 1e-18 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 0.001 | |
| d1wb1a4 | 179 | c.37.1.8 (A:1-179) Elongation factor SelB, N-termi | 4e-17 | |
| d1wb1a4 | 179 | c.37.1.8 (A:1-179) Elongation factor SelB, N-termi | 2e-14 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 9e-17 | |
| d1n0ua1 | 138 | b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), | 9e-17 | |
| d2dy1a1 | 103 | b.43.3.1 (A:275-377) Elongation factor G (EF-G), d | 2e-15 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 5e-15 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 1e-10 | |
| d2bv3a5 | 89 | d.58.11.1 (A:600-688) Elongation factor G (EF-G) { | 6e-14 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 1e-13 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 5e-07 | |
| d2dy1a5 | 96 | d.58.11.1 (A:570-665) Elongation factor G (EF-G) { | 5e-13 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 1e-12 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 0.002 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 4e-12 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 4e-04 | |
| d1puia_ | 188 | c.37.1.8 (A:) Probable GTPase EngB {Escherichia co | 4e-12 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 5e-12 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 0.002 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 5e-12 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 6e-05 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 7e-12 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 4e-04 | |
| d2bv3a1 | 121 | b.43.3.1 (A:283-403) Elongation factor G (EF-G), d | 7e-12 | |
| d1n0ua5 | 117 | d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) | 1e-11 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 3e-11 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 3e-04 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 3e-11 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 4e-11 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 8e-11 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 5e-10 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 7e-05 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 1e-09 | |
| d1svia_ | 195 | c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti | 2e-09 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 2e-09 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 1e-04 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 3e-09 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 0.002 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 5e-09 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 5e-09 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 8e-09 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 1e-08 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 2e-08 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 5e-08 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 5e-08 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 7e-08 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 2e-07 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 2e-07 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 3e-07 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 6e-07 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 6e-07 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 2e-05 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 6e-06 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 7e-06 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 1e-05 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-05 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 1e-04 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 1e-04 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 3e-04 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 4e-04 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 5e-04 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 7e-04 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 0.001 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 0.003 |
| >d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase II TruB domain: Pseudouridine synthase II TruB species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 199 bits (506), Expect = 2e-58
Identities = 73/218 (33%), Positives = 122/218 (55%), Gaps = 4/218 (1%)
Query: 663 HGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSE 722
G++++DKP G++S++ + + + + ++VG+ GTLDP ATG+L + ATK L+
Sbjct: 4 PGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTA 63
Query: 723 ADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALK 782
A K Y A I LG TT T D EG+++ +IE I+ + G+I Q+P SA+K
Sbjct: 64 APKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIK 123
Query: 783 YKGIPLYKYARSGITIKRKLRYIKIYKITIIDYT----IPYLTLRIHCSKGTYIRVLSED 838
G Y+ AR G +++ + R I+I + ++ + + + I CS GTYIR L+ D
Sbjct: 124 VGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALARD 183
Query: 839 IGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSE 876
+G LG G H+ LRR + + LD+ ++D + +
Sbjct: 184 LGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPA 221
|
| >d1r3ea2 d.265.1.2 (A:10-237) Pseudouridine synthase II TruB {Thermotoga maritima [TaxId: 2336]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase II TruB domain: Pseudouridine synthase II TruB species: Thermotoga maritima [TaxId: 2336]
Score = 188 bits (479), Expect = 8e-55
Identities = 81/230 (35%), Positives = 127/230 (55%), Gaps = 4/230 (1%)
Query: 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYL 720
+ HG+L+ KP G +S++ + +++ L +KVG+ GTLDPFA G+L + + T+ +
Sbjct: 1 MKHGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFY 60
Query: 721 SEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSA 780
+ K Y + LG+ TET DI G + + + E I + + +F G+ Q+PP YSA
Sbjct: 61 KDLKKVYWVKMRLGLITETFDITG-EVVEERECNVTEEEIREAIFSFVGEYDQVPPAYSA 119
Query: 781 LKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIG 840
KYKG LYK AR G I + +KI+KI ++ ++ R+ S GTYIR L DIG
Sbjct: 120 KKYKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGTYIRSLCMDIG 179
Query: 841 KMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILL 890
LGCGA L R + T+++ LN+ + E + +IP++ L
Sbjct: 180 YKLGCGATAVELVRESVGPHTIEESLNVFEA---APEEIENRIIPLEKCL 226
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 179 bits (456), Expect = 4e-52
Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 5/190 (2%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
I HVDHGKTTL + + + +D+ E+ RGITI + +
Sbjct: 7 GTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAAR 66
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVV- 1044
D PGHAD+ + + +D +L++ A +GPMPQTR A ++G + +VV
Sbjct: 67 HYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYV 126
Query: 1045 NKID--RSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 1102
NK D + + E V +L + E + P+I SAL + + ++
Sbjct: 127 NKADAVQDSEMVELVELEIRELLTEFGYKGE--ETPIIVGSALCALEQRDPELGLKSVQK 184
Query: 1103 LFEAILKYVP 1112
L +A+ Y+P
Sbjct: 185 LLDAVDTYIP 194
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 131 bits (331), Expect = 2e-35
Identities = 52/184 (28%), Positives = 75/184 (40%), Gaps = 29/184 (15%)
Query: 72 VTIMGHVDHGKTSLLDYIRKT----------------NVVFSEAGGITQHIGAYNVVTNH 115
V +GHVDHGKT+L I K N A GIT + T
Sbjct: 6 VGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA 65
Query: 116 GSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGV-PLIVA 174
D PGH + G D +LVVAA+DG MPQTRE + A+ GV ++V
Sbjct: 66 RHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVY 125
Query: 175 INKIDKLD--INLDRIKQDLISEQVIPEEYGGASPFISISAKTGV----------GINKL 222
+NK D + ++ ++ ++ G +P I SA + + KL
Sbjct: 126 VNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKL 185
Query: 223 LENI 226
L+ +
Sbjct: 186 LDAV 189
|
| >d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB {Escherichia coli [TaxId: 562]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase II TruB domain: Pseudouridine synthase II TruB species: Escherichia coli [TaxId: 562]
Score = 181 bits (459), Expect = 6e-52
Identities = 107/228 (46%), Positives = 152/228 (66%), Gaps = 1/228 (0%)
Query: 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLS 721
I+GVLLLDKP G+SSN+AL+K+K + NA + G+TG LDP ATG+LP+C GEATKFS YL
Sbjct: 3 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 62
Query: 722 EADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSAL 781
++DK Y I LG T+T D +G+I+ + + S E + L F G I QIP MYSAL
Sbjct: 63 DSDKRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 121
Query: 782 KYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGK 841
KY+G LY+YAR GI + R+ R I +Y++ I + L L IHCSKGTYIR + +D+G+
Sbjct: 122 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 181
Query: 842 MLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDIL 889
LGCGAH+ YLRR+ + K +++ + ++ + + E + ++L
Sbjct: 182 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 229
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 171 bits (435), Expect = 3e-49
Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 10/197 (5%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNI-NARIMDSNEIEKERGITIFSKNCSIEYNG 984
I HVDHGKTTL L + N + + +D E+ RGITI + + E
Sbjct: 7 GTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK 66
Query: 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV-V 1043
+ +D PGHAD+ + + +D +L++ A +GPMPQTR A ++G IV
Sbjct: 67 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVF 126
Query: 1044 VNKIDR--SNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQG--- 1098
+NK+D + V DL ++ +++ + N K R+G
Sbjct: 127 MNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENE 186
Query: 1099 ---NMIPLFEAILKYVP 1112
+ L +AI +Y+P
Sbjct: 187 WVDKIWELLDAIDEYIP 203
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 143 bits (363), Expect = 2e-39
Identities = 52/168 (30%), Positives = 72/168 (42%), Gaps = 20/168 (11%)
Query: 72 VTIMGHVDHGKTSLLDYIRKT-----------------NVVFSEAGGITQHIGAYNVVTN 114
V +GHVDHGKT+L + A GIT + T
Sbjct: 6 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 65
Query: 115 HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIV 173
+ +D PGH + GA D +LVV+A DG MPQTRE I A+ GVP ++V
Sbjct: 66 KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVV 125
Query: 174 AINKIDKLDI--NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
+NK+D +D LD ++ ++ E G P I SA +
Sbjct: 126 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQ 173
|
| >d2ey4a2 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase II TruB domain: Pseudouridine synthase II TruB species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 159 bits (402), Expect = 3e-44
Identities = 69/240 (28%), Positives = 108/240 (45%), Gaps = 44/240 (18%)
Query: 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYL 720
I GV+ LDKP G +S+ + IK +LN +K G+ GTLDP +G+LP+ +AT+ L
Sbjct: 40 IQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQAL 99
Query: 721 SEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSA 780
A K Y A++HL + I +++ F G+I Q PP+ SA
Sbjct: 100 LPAGKEYVALMHLHGDVPE------------------DKIIQVMKEFEGEIIQRPPLRSA 141
Query: 781 LKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIG 840
+KR+LR K+Y I +++ + R+ GTYIR L IG
Sbjct: 142 -----------------VKRRLRTRKVYYIEVLEIEGRDVLFRVGVEAGTYIRSLIHHIG 184
Query: 841 KMLGCGAHLKYLRRIGIDKLTLDKCL-NIDTIIKYSEYERISS--------LIPIDILLS 891
LG GAH+ LRR D+ L + ++ Y + + + P++ +
Sbjct: 185 LALGVGAHMSELRRTRSGPFKEDETLITLHDLVDYYYFWKEDGIEEYFRKAIQPMEKAVE 244
|
| >d2apoa2 d.265.1.2 (A:17-246) Pseudouridine synthase II TruB {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase II TruB domain: Pseudouridine synthase II TruB species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 154 bits (391), Expect = 6e-43
Identities = 66/238 (27%), Positives = 105/238 (44%), Gaps = 43/238 (18%)
Query: 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYL 720
I +GV+++DKP G +S+ +K +LN K G+ GTLDP TG+LP+ ATK
Sbjct: 27 IKYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTIPMW 86
Query: 721 SEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSA 780
K Y ++HL D I ++ F G+I Q PP+ +A
Sbjct: 87 HIPPKEYVCLMHLHRDASEED------------------ILRVFKEFTGRIYQRPPLKAA 128
Query: 781 LKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIG 840
+KR+LR KI+++ ++D + R+ C GTYIR L EDIG
Sbjct: 129 -----------------VKRRLRIRKIHELELLDKDGKDVLFRVKCQSGTYIRKLCEDIG 171
Query: 841 KMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISS--------LIPIDILL 890
+ LG AH++ LRR + + ++ + + + P++ L
Sbjct: 172 EALGTSAHMQELRRTKSGCFEEKDAVYLQDLLDAYVFWKEDGDEEELRRVIKPMEYGL 229
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 144 bits (364), Expect = 3e-39
Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 28/188 (14%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNI---------------NARIMDSNEIEKERG 970
+I HVD GK+T HL+ + G K A ++D + E+ERG
Sbjct: 10 VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERG 69
Query: 971 ITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPM------- 1023
ITI E ++ +ID PGH DF + S D +L+I G
Sbjct: 70 ITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKD 129
Query: 1024 PQTRFVTRKALKLGFKPIVV-VNKIDRSN---ARPEWVVDATFDLFDKLCATEEQLDFPV 1079
QTR A LG + ++V VNK+D +R + +V T + K+ + + F
Sbjct: 130 GQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPF-- 187
Query: 1080 IYTSALHG 1087
+ S +G
Sbjct: 188 VPISGWNG 195
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 110 bits (277), Expect = 1e-27
Identities = 48/198 (24%), Positives = 71/198 (35%), Gaps = 42/198 (21%)
Query: 72 VTIMGHVDHGKTSLL------------DYIRKTNVVFSEAGG------------------ 101
V ++GHVD GK++ I K +E G
Sbjct: 9 VVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERER 68
Query: 102 -ITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVM------ 154
IT I + T +T +D PGH F G D +L++A G
Sbjct: 69 GITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISK 128
Query: 155 -PQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIPEEYG---GASPFI 209
QTRE A GV LIVA+NK+D + + R ++ + ++ G PF+
Sbjct: 129 DGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFV 188
Query: 210 SISAKTGVGINKLLENIS 227
IS G + + N
Sbjct: 189 PISGWNGDNMIEATTNAP 206
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 145 bits (366), Expect = 4e-39
Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 5/170 (2%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNI--NARIMDSNEIEKERGITIFSKNCSIEYN 983
I AH+D GKTT + +L +G K + A MD E E+ERGITI + + +
Sbjct: 10 GIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK 69
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
RINIID PGH DF EVER + ++D +++ D+ +G PQ+ V R+A K I
Sbjct: 70 DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAF 129
Query: 1044 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENS 1093
NK+D++ A V + ++L A + P+ G +
Sbjct: 130 ANKMDKTGADLWLV---IRTMQERLGARPVVMQLPIGREDTFSGIIDVLR 176
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 120 bits (301), Expect = 2e-30
Identities = 33/139 (23%), Positives = 49/139 (35%), Gaps = 18/139 (12%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFS-----EAGGITQHIGAYNV-------------VT 113
+ I H+D GKT+ + I G T
Sbjct: 9 IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW 68
Query: 114 NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIV 173
I +D PGH FT R +V D ++V + GV PQ+ A+ VP I
Sbjct: 69 KDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIA 128
Query: 174 AINKIDKLDINLDRIKQDL 192
NK+DK +L + + +
Sbjct: 129 FANKMDKTGADLWLVIRTM 147
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 142 bits (358), Expect = 1e-38
Identities = 57/220 (25%), Positives = 82/220 (37%), Gaps = 37/220 (16%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERG 970
+I HVDHGK+TL+ LL G + A ++D + E+ERG
Sbjct: 7 IVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERG 66
Query: 971 ITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-------M 1023
+TI E IID PGH DF + S D +L++ A +G
Sbjct: 67 VTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVE 126
Query: 1024 PQTRFVTRKALKLGFKP-IVVVNKID-----RSNARPEWVVDATFDLFDKLCATEEQLDF 1077
QTR A +G IV VNK+D R + +VD ++ F
Sbjct: 127 GQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRF 186
Query: 1078 PVIYTSALHGYANENSKARQGNM----IPLFEAILKYVPV 1113
+ A G +N + NM P E L + +
Sbjct: 187 --VPVVAPSG---DNITHKSENMKWYNGPTLEEYLDQLEL 221
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 112 bits (280), Expect = 2e-28
Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 50/217 (23%)
Query: 72 VTIMGHVDHGKTSLLD------------YIRKTNVVFSEAG------------------- 100
+ ++GHVDHGK++L+ +++ + G
Sbjct: 6 LIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERER 65
Query: 101 GITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV------- 153
G+T ++ T T +D PGH F GA D +LVV+A G
Sbjct: 66 GVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSV 125
Query: 154 MPQTREAIAHAKISGVP-LIVAINKIDKLDINLD--RIKQDLISEQVIPEEYG---GASP 207
QTRE I AK G+ LIVA+NK+D + D R K+ + YG
Sbjct: 126 EGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVR 185
Query: 208 FISISAKTGVGINKLLENI------SLQAEILELKAP 238
F+ + A +G I EN+ +L+ + +L+ P
Sbjct: 186 FVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLELP 222
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 138 bits (349), Expect = 4e-36
Identities = 62/170 (36%), Positives = 91/170 (53%), Gaps = 19/170 (11%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY--- 982
++IAHVDHGK+TL D L++++G + AR D+ + E+ERGITI S S+
Sbjct: 21 SVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMS 80
Query: 983 -------------NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFV 1029
N IN+ID+PGH DF EV L + D L+++D +EG QT V
Sbjct: 81 DEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV 140
Query: 1030 TRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079
R+AL KP+VV+NK+DR+ + + DL+ T E ++ V
Sbjct: 141 LRQALGERIKPVVVINKVDRALLELQVSKE---DLYQTFARTVESVNVIV 187
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 94.0 bits (233), Expect = 5e-21
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 32/153 (20%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAG----------------GITQHIGAYNVVT-- 113
++++ HVDHGK++L D + + + S A GIT A ++ +
Sbjct: 20 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEM 79
Query: 114 --------------NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTRE 159
N I +D+PGH F++ +VTD ++VV +GV QT
Sbjct: 80 SDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET 139
Query: 160 AIAHAKISGVPLIVAINKIDKLDINLDRIKQDL 192
+ A + +V INK+D+ + L K+DL
Sbjct: 140 VLRQALGERIKPVVVINKVDRALLELQVSKEDL 172
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Score = 113 bits (284), Expect = 9e-29
Identities = 50/210 (23%), Positives = 77/210 (36%), Gaps = 27/210 (12%)
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINAR-----------------IMDSNE 964
+++ +VD GK+TLI LL S ++ ++D +
Sbjct: 9 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQ 68
Query: 965 IEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP 1024
E+E+GITI + I DTPGH + + S D ++L+DA G
Sbjct: 69 AEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT 128
Query: 1025 QTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA--TEEQLDFPVIYT 1082
QTR + A LG K IVV N E V ++ + K + +
Sbjct: 129 QTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPM 188
Query: 1083 SALHGYANENSKARQGNMI-----PLFEAI 1107
SAL G +N + L E +
Sbjct: 189 SALKG---DNVVNKSERSPWYAGQSLMEIL 215
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Score = 98.4 bits (244), Expect = 2e-23
Identities = 43/194 (22%), Positives = 66/194 (34%), Gaps = 38/194 (19%)
Query: 71 IVTIMGHVDHGKTSLLDYI---------------------------------RKTNVVFS 97
+T G+VD GK++L+ + +
Sbjct: 12 FLTC-GNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAE 70
Query: 98 EAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQT 157
GIT + T DTPGHE +T A GA D+ +++V A GV QT
Sbjct: 71 REQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT 130
Query: 158 REAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIPEEY---GGASPFISISA 213
R A + G+ ++VAINK+D + + E F+ +SA
Sbjct: 131 RRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSA 190
Query: 214 KTGVGINKLLENIS 227
G + E
Sbjct: 191 LKGDNVVNKSERSP 204
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 112 bits (279), Expect = 4e-28
Identities = 69/215 (32%), Positives = 103/215 (47%), Gaps = 50/215 (23%)
Query: 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGA------------------ 108
+R+PIV+++GHVDHGKT+LLD+IR + V EAGGITQHIGA
Sbjct: 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKK 62
Query: 109 YNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISG 168
+++ + F+DTPGHEAFT +R RG + D+ +L+V ++G PQT+EA+ ++
Sbjct: 63 FSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYR 122
Query: 169 VPLIVAINKIDKLDINLDRIKQDLISEQV------------------------------- 197
P +VA NKID++ + +
Sbjct: 123 TPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERF 182
Query: 198 -IPEEYGGASPFISISAKTGVGINKLLENISLQAE 231
++ I ISA TG GI +LL + A+
Sbjct: 183 DRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 89.4 bits (220), Expect = 2e-20
Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 3/190 (1%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIM--DSNEIEKERGITIFSKNCSIEYN 983
+++ HVDHGKTTL+DH+ + R+ I I + E F K SI
Sbjct: 9 SVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRET 68
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
+ IDTPGH F +R ++ D +L++D EG PQT+ +V
Sbjct: 69 LPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVA 128
Query: 1044 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPL 1103
NKIDR + + F K + Q + E ++ + + +
Sbjct: 129 ANKIDRIHGWRVHEGRPFMETFSKQDI-QVQQKLDTKVYELVGKLHEEGFESERFDRVTD 187
Query: 1104 FEAILKYVPV 1113
F + + +P+
Sbjct: 188 FASQVSIIPI 197
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 108 bits (271), Expect = 7e-27
Identities = 47/190 (24%), Positives = 71/190 (37%), Gaps = 28/190 (14%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQ---------------NINARIMDSNEIEKERG 970
I HVD GK+TL ++L +G K + +DS E+E+G
Sbjct: 28 VFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKG 87
Query: 971 ITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMP------ 1024
T+ E R +++D PGH + + S D +L+I A G
Sbjct: 88 KTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERG 147
Query: 1025 -QTRFVTRKALKLGFKPIVV-VNKIDR-----SNARPEWVVDATFDLFDKLCATEEQLDF 1077
QTR A G +VV +NK+D S R + VD ++ + D
Sbjct: 148 GQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDV 207
Query: 1078 PVIYTSALHG 1087
+ SA G
Sbjct: 208 KYMPVSAYTG 217
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 94.9 bits (235), Expect = 5e-22
Identities = 48/225 (21%), Positives = 81/225 (36%), Gaps = 49/225 (21%)
Query: 48 DPESFLLNEYNKNITAESLVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAG------- 100
D ++ + E K++ + V + +GHVD GK++L I + +
Sbjct: 6 DLQNEVDQELLKDMYGKEHVN---IVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIERE 62
Query: 101 ------------------------GITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARG 136
G T +G T H + LD PGH+ + G
Sbjct: 63 AKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMING 122
Query: 137 AKVTDIVVLVVAADDGVMP-------QTREAIAHAKISGVP-LIVAINKIDKLDINLDRI 188
A DI VLV++A G QTRE A+ G+ L+V INK+D+ +
Sbjct: 123 ASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEE 182
Query: 189 KQDLI-------SEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ +V ++ +SA TG + +++
Sbjct: 183 RYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSS 227
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 105 bits (261), Expect = 6e-26
Identities = 42/204 (20%), Positives = 71/204 (34%), Gaps = 30/204 (14%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
++ HVDHGKTTL+ + + + + E G+ K
Sbjct: 12 GVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEP 71
Query: 986 ---------------RINIIDTPGHADFGGEVERILSMVD-NVLLLIDAVEGPMPQTRFV 1029
RI+ ID PGH + +++D +L++ P PQTR
Sbjct: 72 SCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREH 131
Query: 1030 TRKALKLGFKPIVV-VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088
+G K +++ NK+D + + + + P+I SALH
Sbjct: 132 FVALGIIGVKNLIIVQNKVDVVSKEEALSQ---YRQIKQFTKGTWAENVPIIPVSALHKI 188
Query: 1089 ANENSKARQGNMIPLFEAILKYVP 1112
N+ L E I +Y+
Sbjct: 189 ----------NIDSLIEGIEEYIK 202
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 93.1 bits (230), Expect = 8e-22
Identities = 46/187 (24%), Positives = 70/187 (37%), Gaps = 32/187 (17%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFS----------EAGGITQHIGAYNVVTNHG----- 116
+ ++GHVDHGKT+L+ I + G +IG
Sbjct: 11 IGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTE 70
Query: 117 ----------------SITFLDTPGHEAFTAMRARGAKVTDIVVLVVA-ADDGVMPQTRE 159
I+F+D PGHE A GA + D +LVVA + PQTRE
Sbjct: 71 PSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE 130
Query: 160 AIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219
I GV ++ + + + + Q +Q + P I +SA + I
Sbjct: 131 HFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINI 190
Query: 220 NKLLENI 226
+ L+E I
Sbjct: 191 DSLIEGI 197
|
| >d1g7sa3 c.20.1.1 (A:329-459) Initiation factor IF2/eIF5b, domain 3 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 131 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Initiation factor IF2/eIF5b, domain 3 superfamily: Initiation factor IF2/eIF5b, domain 3 family: Initiation factor IF2/eIF5b, domain 3 domain: Initiation factor IF2/eIF5b, domain 3 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 95.3 bits (237), Expect = 2e-23
Identities = 25/128 (19%), Positives = 60/128 (46%), Gaps = 13/128 (10%)
Query: 353 ENMFNDINKEKV--KNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESD 410
E + ++I K+ +++K D GS E + + L+ + + + +G+++ D
Sbjct: 7 EEILSEIEDIKIDTDEAGVVVKADTLGSLEAVVKILR-----DMYVPIKVADIGDVSRRD 61
Query: 411 INLAIASK------AIIIGFNVRADASTRKLAQINNINIRYHNIIYNIIKEIKSEITNLI 464
+ A + II FNV+ S + + ++I + N+IY +++E + + +
Sbjct: 62 VVNAGIALQEDRVYGAIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEWVRGIE 121
Query: 465 PLEKKENL 472
+KK+ +
Sbjct: 122 EEKKKKWM 129
|
| >d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4 {Bacillus stearothermophilus [TaxId: 1422]} Length = 99 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Bacillus stearothermophilus [TaxId: 1422]
Score = 94.0 bits (234), Expect = 2e-23
Identities = 37/71 (52%), Positives = 55/71 (77%)
Query: 469 KENLLGLAEIRQVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKD 528
+E ++G AE+RQ V+KV IAGCY+ +G I RDSK+R++R +++ GE+DSLKR+KD
Sbjct: 2 EEKVIGQAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKD 61
Query: 529 NVKEVKAGFEC 539
+V+EV G+EC
Sbjct: 62 DVREVAQGYEC 72
|
| >d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 93.3 bits (232), Expect = 4e-23
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 18/98 (18%)
Query: 242 PAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNEN---------- 291
PA+G I+E + + G G +I G LR D + S I + +
Sbjct: 4 PARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMR 63
Query: 292 -----GKNILEAGPSIPVEI--QGLTKVPFSGEELFVI 322
+ + E + ++I G+ V +G L V+
Sbjct: 64 ESRKKFQKVDEVVAAAGIKIVAPGIDDVM-AGSPLRVV 100
|
| >d1pa4a_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Mycoplasma pneumoniae [TaxId: 2104]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Alpha-lytic protease prodomain-like superfamily: Ribosome-binding factor A, RbfA family: Ribosome-binding factor A, RbfA domain: Ribosome-binding factor A, RbfA species: Mycoplasma pneumoniae [TaxId: 2104]
Score = 92.2 bits (229), Expect = 7e-23
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 544 RIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNL 603
R+EN I R I+ + +I N + +T VK++ D + ++ +N++ + +
Sbjct: 3 RLENDIIRLINRTVIHEIYNETVKTGHVTHVKLSDDLLHVTVYLDCYNREQIDRVV-GAF 61
Query: 604 SKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAM 638
++AK L+ L++ ++F D +I+NAM
Sbjct: 62 NQAKGVFSRVLAHNLYLAKAVQIHFVKDKAIDNAM 96
|
| >d1josa_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Haemophilus influenzae [TaxId: 727]} Length = 100 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Alpha-lytic protease prodomain-like superfamily: Ribosome-binding factor A, RbfA family: Ribosome-binding factor A, RbfA domain: Ribosome-binding factor A, RbfA species: Haemophilus influenzae [TaxId: 727]
Score = 91.9 bits (228), Expect = 1e-22
Identities = 33/100 (33%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
Query: 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFN--KDISIKN 598
R R+ +IQ++I+ I+ ++++P I ++T+++V+++ D SYAKIF T +++I+
Sbjct: 1 RSDRVAQEIQKEIAVILQREVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQ 60
Query: 599 ILDNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAM 638
+ L KA YIR L K + + +P + F YD S+ M
Sbjct: 61 GMKGLEKASPYIRSLLGKAMRLRIVPEIRFIYDQSLVEGM 100
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Score = 95.8 bits (237), Expect = 2e-22
Identities = 30/236 (12%), Positives = 51/236 (21%), Gaps = 80/236 (33%)
Query: 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNV------------------- 111
IV +G GKT+L + + + G +
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMR 61
Query: 112 -----------------------------VTNHGSITFLDTPGHEAFTAMRARGAKVTD- 141
+ +DTPG G ++ +
Sbjct: 62 EGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMEN 121
Query: 142 ----IVVLVVAADDGVMPQTREAIAHAKIS-----GVPLIVAINKIDKLDIN-------- 184
+VV + + P + + G I A+NK+D L
Sbjct: 122 LPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKY 181
Query: 185 --------------LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ E + +SAKT G L
Sbjct: 182 FEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLA 237
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Score = 66.6 bits (161), Expect = 2e-12
Identities = 33/208 (15%), Positives = 55/208 (26%), Gaps = 42/208 (20%)
Query: 927 IIAHVDHGKTTLIDHLLRQSGTFRKNQNIN----------------ARIMDSNEIEKERG 970
+ GKTTL R K +N + EI +E
Sbjct: 5 FVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGY 64
Query: 971 ITIFSKNCSIEYNGT----------------RINIIDTPGHADFGGEVERILSMVDN--- 1011
+ S + +IDTPG + E + +++N
Sbjct: 65 GPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY 124
Query: 1012 --VLLLIDAVEGPMPQTRF-----VTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDL 1064
V+ + D P L+LG I +NK+D + + F+
Sbjct: 125 PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFED 184
Query: 1065 FDKLCATEEQLDFPVIYTSALHGYANEN 1092
D L A + +
Sbjct: 185 IDYLTARLKLDPSMQGLMAYKMCSMMTE 212
|
| >d1kkga_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Escherichia coli [TaxId: 562]} Length = 108 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Alpha-lytic protease prodomain-like superfamily: Ribosome-binding factor A, RbfA family: Ribosome-binding factor A, RbfA domain: Ribosome-binding factor A, RbfA species: Escherichia coli [TaxId: 562]
Score = 90.7 bits (225), Expect = 3e-22
Identities = 31/101 (30%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 541 RLSRIENQIQRDISEIIAFDIQNPIIN-IITITEVKITLDYSYAKIFFTTFNKDI--SIK 597
R R+ ++Q++I+ I+ +I++P + + T++ V+++ D +YAK++ T N ++K
Sbjct: 7 RPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMSRDLAYAKVYVTFLNDKDEDAVK 66
Query: 598 NILDNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAM 638
+ L +A +IR L K + + +P L FFYDNS+ M
Sbjct: 67 AGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGM 107
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 91.1 bits (225), Expect = 2e-20
Identities = 42/171 (24%), Positives = 67/171 (39%), Gaps = 7/171 (4%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARI--MDSNEIEKERGITIFSKNCSIEYN 983
A++ H GKTTL + LL ++G + + D K T+ + + +
Sbjct: 6 ALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR 65
Query: 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 1043
G R+ ++D PG+ DF GE+ L D L+ + A G T A +LG +VV
Sbjct: 66 GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVV 125
Query: 1044 VNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSK 1094
V K+D + DL L +D P+ G +
Sbjct: 126 VTKLD----KGGDYYALLEDLRSTLGPI-LPIDLPLYEGGKWVGLIDVFHG 171
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 59.9 bits (144), Expect = 5e-10
Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 18/126 (14%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAG------------------GITQHIGAYNVVT 113
V ++GH GKT+L + + G T G ++
Sbjct: 5 VALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF 64
Query: 114 NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIV 173
+ LD PG+ F + D ++ V+A+ GV T A A+ G+P +V
Sbjct: 65 RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMV 124
Query: 174 AINKID 179
+ K+D
Sbjct: 125 VVTKLD 130
|
| >d2e7ga1 d.52.7.1 (A:86-201) Ribosome-binding factor A, RbfA {Human (Homo sapiens) [TaxId: 9606]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Alpha-lytic protease prodomain-like superfamily: Ribosome-binding factor A, RbfA family: Ribosome-binding factor A, RbfA domain: Ribosome-binding factor A, RbfA species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.8 bits (207), Expect = 1e-19
Identities = 14/109 (12%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Query: 541 RLSRIENQIQRDISEIIAFDIQNPIIN--IITITEVKITLDYSYAKIFFTTFNKDISIKN 598
RL + + + +++++ + + + +++V +T D+S + ++ T +
Sbjct: 7 RLRALNGLLYKALTDLLCTPEVSQELYDLNVELSKVSLTPDFSACRAYWKTTLSAEQNAH 66
Query: 599 ILDNLSKAKNYIRFKLSKKLHIHTLPILNFFYDNSIENAMMISKLIDGI 647
+ L ++ ++R L + + +P + F D + +L+
Sbjct: 67 MEAVLQRSAAHMRHLLMSQQTLRNVPPIVFVQDKGNAALAELDQLLAVA 115
|
| >d2dyja1 d.52.7.1 (A:4-94) Ribosome-binding factor A, RbfA {Thermus thermophilus [TaxId: 274]} Length = 91 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Alpha-lytic protease prodomain-like superfamily: Ribosome-binding factor A, RbfA family: Ribosome-binding factor A, RbfA domain: Ribosome-binding factor A, RbfA species: Thermus thermophilus [TaxId: 274]
Score = 82.5 bits (204), Expect = 2e-19
Identities = 20/91 (21%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 543 SRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDN 602
+ +E Q++R ++E I +++P + ++T+ V+++ D S ++ F ++ + L
Sbjct: 3 AHLEAQLKRALAEEIQ-ALEDPRLFLLTVEAVRLSKDGSVLSVYVEAFREE---EGALRA 58
Query: 603 LSKAKNYIRFKLSKKLHIHTLPILNFFYDNS 633
LS+A+ + L++++ + LP L F +
Sbjct: 59 LSRAERRLVAALARRVRMRRLPRLEFLPWRA 89
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Score = 84.7 bits (208), Expect = 4e-19
Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 21/197 (10%)
Query: 926 AIIAHVDHGKTTLIDHLL----------RQSGTFRKNQNINARIMDSNEIEKERGITIFS 975
++ HVDHGKTTL L + G K +A I + +
Sbjct: 9 GMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCP 68
Query: 976 KNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK 1035
R++ ID PGH + S++D +L+I A E AL+
Sbjct: 69 YCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQ 128
Query: 1036 LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA 1095
+ + +++ ++ + + + + P+I SALHG
Sbjct: 129 IIGQKNIIIA-QNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGA------- 180
Query: 1096 RQGNMIPLFEAILKYVP 1112
N+ L +AI ++P
Sbjct: 181 ---NIDVLVKAIEDFIP 194
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Score = 81.2 bits (199), Expect = 8e-18
Identities = 52/183 (28%), Positives = 75/183 (40%), Gaps = 29/183 (15%)
Query: 72 VTIMGHVDHGKTSLLDYIRKT---NVVFSEAGGITQHIGAYNVVTNHGS----------- 117
+ ++GHVDHGKT+L + GIT IG +
Sbjct: 8 IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 67
Query: 118 ------------ITFLDTPGHEAFTAMRARGAKVTDIVVLVVA-ADDGVMPQTREAIAHA 164
++F+D PGHEA GA + D +LV+A + PQTRE +
Sbjct: 68 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 127
Query: 165 KISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223
+I G +I+A NKI+ +D I E I +P I ISA G I+ L+
Sbjct: 128 QIIGQKNIIIAQNKIELVDKEKALENYRQIKE-FIEGTVAENAPIIPISALHGANIDVLV 186
Query: 224 ENI 226
+ I
Sbjct: 187 KAI 189
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 84.3 bits (207), Expect = 1e-18
Identities = 28/204 (13%), Positives = 62/204 (30%), Gaps = 22/204 (10%)
Query: 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG-SITFLDTPGH 126
P + I G + GKTSLL + +V + G +T +D PGH
Sbjct: 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVR-----PTVVSQEPLSAADYDGSGVTLVDFPGH 56
Query: 127 EA----FTAMRARGAKVTDIVVLVVAADDGV---------MPQTREAIAHAKISGVPLIV 173
+ AK ++ +V + + + +G+ +++
Sbjct: 57 VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 116
Query: 174 AINKIDKLDINLDRIKQDLISEQV--IPEEYGGASPFISISAKTGVGINKLLENISLQAE 231
A NK + +D + ++ + E + + L+ +
Sbjct: 117 ACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDG 176
Query: 232 I-LELKAPVTTPAKGVIIESRLDK 254
+G I + ++ +
Sbjct: 177 FKFANLEASVVAFEGSINKRKISQ 200
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.6 bits (91), Expect = 0.001
Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 33/146 (22%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
I + GKT+L+ L + + +Y+G+
Sbjct: 7 IIAGPQNSGKTSLLTLLTTD--------------------SVRPTVVSQEPLSAADYDGS 46
Query: 986 RINIIDTPGHA----DFGGEVERILSMVDNVLLLIDAVEGP---------MPQTRFVTRK 1032
+ ++D PGH ++ V ++ ++D+ P + +T
Sbjct: 47 GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITES 106
Query: 1033 ALKLGFKPIVVVNKIDRSNARPEWVV 1058
+ + G ++ NK + ARP +
Sbjct: 107 SCENGIDILIACNKSELFTARPPSKI 132
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Score = 78.6 bits (192), Expect = 4e-17
Identities = 48/171 (28%), Positives = 74/171 (43%), Gaps = 7/171 (4%)
Query: 72 VTIMGHVDHGKTSLLDYIRKT-------NVVFSEAGGITQHIGAYNVVTNHGSITFLDTP 124
+ I GH+DHGKT+L + + + S+ GIT IG + IT +D P
Sbjct: 8 LGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAP 67
Query: 125 GHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN 184
GH A + D+ ++VV A +G QT E + +P+IV I K D
Sbjct: 68 GHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTE 127
Query: 185 LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILEL 235
+ + ++ + S I ISAKTG G+++L I E+
Sbjct: 128 EIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEI 178
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Score = 70.9 bits (172), Expect = 2e-14
Identities = 47/187 (25%), Positives = 71/187 (37%), Gaps = 21/187 (11%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
I H+DHGKTTL L + T D ++RGITI + +
Sbjct: 9 GIFGHIDHGKTTLSKVLTEIAST---------SAHDKLPESQKRGITIDIGFSAFKLENY 59
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
RI ++D PGHAD V ++D L+++DA EGP QT ++V
Sbjct: 60 RITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIP--IIVV 117
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
NA E + + L +T + +I SA G+ + L
Sbjct: 118 ITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGF----------GVDELKN 167
Query: 1106 AILKYVP 1112
I+ +
Sbjct: 168 LIITTLN 174
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 78.5 bits (192), Expect = 9e-17
Identities = 42/206 (20%), Positives = 62/206 (30%), Gaps = 18/206 (8%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFL--DTPGHEAF 129
V +G D GKT L + ++ IT Y V N G+ L
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61
Query: 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREA--------IAHAKISGVPLIVAINKIDKL 181
+ R VV VV + A + A + L++A NK D
Sbjct: 62 FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 121
Query: 182 D-INLDRIKQDLISE-QVIPEEYGGASPFISISAKTGV-----GINKLLENISLQAEILE 234
+ I+Q L E + A + S+ G + L+ E LE
Sbjct: 122 MAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLE 181
Query: 235 LKAPVTTPAKGVIIESRLDKGKGPVA 260
A G L+K +A
Sbjct: 182 CSAKGGRGDTGSADIQDLEKWLAKIA 207
|
| >d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor 2 (eEF-2), domain II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.3 bits (187), Expect = 9e-17
Identities = 21/113 (18%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 1113 VHKDNSNNPLQLQIISLEYSSYLGK-IGIGRILSGRIKSLQDVVIMN-----GPDDKPNK 1166
+ + L L + + +S G+ GR+ +G +KS Q V I G D
Sbjct: 26 IKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFI 85
Query: 1167 AKINQIRVFKGLDRVLVNEALSGDIVLITGIEE-ICIGSTICDPSKPNGLPML 1218
I ++ + G +++ +G+I+ + GI++ + T+ + + ++
Sbjct: 86 KAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVM 138
|
| >d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 71.2 bits (174), Expect = 2e-15
Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 1117 NSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFK 1176
+ P ++ ++ ++G++ R+ GR+K + G + + V
Sbjct: 5 FGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQVR------LPHLYVPM 58
Query: 1177 GLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPM 1217
G D + V EA +G ++ + E + G + KP +
Sbjct: 59 GKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEV 99
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 72.8 bits (177), Expect = 5e-15
Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 14/170 (8%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTNHGSITFLDTPGHE--- 127
V I+G + GK++L + I S G T+ V + F+DT G
Sbjct: 11 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKS 70
Query: 128 ---------AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKI 178
+ D+VV+V+ A G+ Q + + G +V NK
Sbjct: 71 RVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKW 130
Query: 179 DKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISL 228
D + + ++ + + SP I SA G I+++++ ++L
Sbjct: 131 DLVV-HREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNL 179
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 60.1 bits (144), Expect = 1e-10
Identities = 38/188 (20%), Positives = 73/188 (38%), Gaps = 18/188 (9%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 982
IK AI+ + GK+TL + +L + R +E+ + +F +
Sbjct: 9 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 68
Query: 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 1042
+ + V + D V++++DA +G Q + + + G +V
Sbjct: 69 ---KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVV 125
Query: 1043 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF-PVIYTSALHGYANENSKARQGNMI 1101
V NK D R + + T +KL +D+ P+I+TSA G+ N+
Sbjct: 126 VFNKWDLVVHREKRYDEFTKLFREKL----YFIDYSPLIFTSADKGW----------NID 171
Query: 1102 PLFEAILK 1109
+ +A+
Sbjct: 172 RMIDAMNL 179
|
| >d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]} Length = 89 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus [TaxId: 274]
Score = 66.4 bits (162), Expect = 6e-14
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 1315 LYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEF 1374
+ EP + V E G ++ LN R G + +E +V + +P + G+ +
Sbjct: 2 ILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV-IRAFVPLAEMFGYATDL 60
Query: 1375 ITLTRGTGLISHVFEEYAP 1393
+ T+G G F+ Y
Sbjct: 61 RSKTQGRGSFVMFFDHYQE 79
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 68.6 bits (166), Expect = 1e-13
Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 24/177 (13%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF----------- 120
+ G + GK++L+ + V + G+T+ I +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62
Query: 121 LDTPGHEAFTAMRARGAKVTDIVVLV-----------VAADDGVMPQTREAIAHAKISGV 169
+ + AK D+ VLV G +P E + +
Sbjct: 63 VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122
Query: 170 PLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
P IVA+NK+DK+ + I + ++E+ FI ISAK G I +L I
Sbjct: 123 PTIVAVNKLDKIKNVQEVI--NFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRI 177
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 49.7 bits (117), Expect = 5e-07
Identities = 32/193 (16%), Positives = 57/193 (29%), Gaps = 20/193 (10%)
Query: 926 AIIAHVDHGKTTLIDHLLRQ----SGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE 981
+ GK+TLI L + + I +++I G
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLID--AVEGPMPQTRFVTRKALKLGFK 1039
+ I+ +V ++ +I G +P + +L
Sbjct: 64 QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 123
Query: 1040 PIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGN 1099
IV VNK+D+ E + L +K ++D I SA G N
Sbjct: 124 TIVAVNKLDKIKNVQEVIN----FLAEKFEVPLSEIDKVFIPISAKFGD----------N 169
Query: 1100 MIPLFEAILKYVP 1112
+ L I + +
Sbjct: 170 IERLKNRIFEVIR 182
|
| >d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Score = 64.2 bits (156), Expect = 5e-13
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 1315 LYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEF 1374
L EP L V + G ++ L R G + +E E + +P ++ +
Sbjct: 2 LLEPIYRLKVLAPQERVGDVLSDLQARRGRILGME-QEGALSVVHAEVPLAEVLEYYKAL 60
Query: 1375 ITLTRGTGLISHVFEEYAP 1393
LT G G + F YA
Sbjct: 61 PGLTGGAGAYTLEFSHYAE 79
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.2 bits (158), Expect = 1e-12
Identities = 28/157 (17%), Positives = 51/157 (32%), Gaps = 5/157 (3%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF--LDTPGHEAF 129
+ ++G GK+ LL + S I V N + DT G E F
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF 64
Query: 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIK 189
+ + ++LV D +T I + ++ + D
Sbjct: 65 RTITTAYYRGAMGIILVY---DITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 121
Query: 190 QDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ + ++Q PFI SAK +N++ +
Sbjct: 122 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 158
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.6 bits (89), Expect = 0.002
Identities = 28/167 (16%), Positives = 50/167 (29%), Gaps = 19/167 (11%)
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE 981
++K +I GK+ L+ + F + GI K I
Sbjct: 2 IMKILLIGDSGVGKSCLLVRFVE--DKF------------NPSFITTIGIDFKIKTVDIN 47
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
++ I DT G F ++L+ D + K +
Sbjct: 48 GKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE 107
Query: 1042 VVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088
+ + + VV A D+ A ++L P I +SA +
Sbjct: 108 AQLLLVGNKSDMETRVVTA-----DQGEALAKELGIPFIESSAKNDD 149
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 64.0 bits (155), Expect = 4e-12
Identities = 23/161 (14%), Positives = 47/161 (29%), Gaps = 12/161 (7%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF--LDTPGHEAF 129
+ ++G GKT +L + + I + + I DT G E F
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 68
Query: 130 TAMRARGAKVTDIVVLVVAADDG----VMPQTREAIAHAKISGVPLIVAINKIDKLDINL 185
+ + ++LV + + I + V ++ N
Sbjct: 69 RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN------KCD 122
Query: 186 DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
K+ + E+ F+ SAK + + +
Sbjct: 123 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 163
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.9 bits (95), Expect = 4e-04
Identities = 24/171 (14%), Positives = 44/171 (25%), Gaps = 26/171 (15%)
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE 981
L K +I GKT ++ F GI + ++
Sbjct: 6 LFKLLLIGDSGVGKTCVLFRFSE--DAFNSTFISTI------------GIDFKIRTIELD 51
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG----PMPQTRFVTRKALKLG 1037
++ I DT G F ++L+ D + +
Sbjct: 52 GKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD 111
Query: 1038 FKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088
+ +++ NK D ++ R D + TSA
Sbjct: 112 VEKMILGNKCDVNDKRQVSKERGEKLALD--------YGIKFMETSAKANI 154
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Score = 64.4 bits (155), Expect = 4e-12
Identities = 24/172 (13%), Positives = 56/172 (32%), Gaps = 14/172 (8%)
Query: 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE 127
V G + GK+S L+ + + + + G
Sbjct: 15 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY 74
Query: 128 AFTAMRARG------------AKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAI 175
A + + +V+++ + ++ I A S + ++V +
Sbjct: 75 AEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 134
Query: 176 NKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
K DKL + + +++ E V + G + S+ G++KL + +
Sbjct: 135 TKADKLASGARKAQLNMVREAV--LAFNGDVQVETFSSLKKQGVDKLRQKLD 184
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.7 bits (154), Expect = 5e-12
Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 12/161 (7%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF--LDTPGHEAF 129
+ ++G+ GKT L+ + + I V N + DT G E F
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF 67
Query: 130 TAMRARGAKVTDIVVLVVAADDG----VMPQTREAIAHAKISGVPLIVAINKIDKLDINL 185
++ + + ++L +P+ I + V ++ NKID
Sbjct: 68 RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID------ 121
Query: 186 DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
++++ ++ ++ SAK + KL ++
Sbjct: 122 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 162
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (88), Expect = 0.002
Identities = 28/170 (16%), Positives = 44/170 (25%), Gaps = 24/170 (14%)
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE 981
L K +I + GKT L+ + G F Q G+ K I
Sbjct: 5 LFKIVLIGNAGVGKTCLVRRFTQ--GLFPPGQGAT------------IGVDFMIKTVEIN 50
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLL---LIDAVEGPMPQTRFVTRKALKLGF 1038
++ I DT G F + + ++L + +
Sbjct: 51 GEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK 110
Query: 1039 KPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088
V+V R E + E D + TSA
Sbjct: 111 VITVLVGNKIDLAERREVS-------QQRAEEFSEAQDMYYLETSAKESD 153
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.7 bits (154), Expect = 5e-12
Identities = 29/165 (17%), Positives = 53/165 (32%), Gaps = 6/165 (3%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAF 129
+ I+G GK+SLL A I + + + DT G E F
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 69
Query: 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIK 189
+ + V+LV + + + +N + I+ + +
Sbjct: 70 RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE 129
Query: 190 QDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILE 234
D ++ FI SAKT G+ E + +I++
Sbjct: 130 VDRNEGLKFARKHS--MLFIEASAKTCDGVQCAFEELV--EKIIQ 170
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (101), Expect = 6e-05
Identities = 29/196 (14%), Positives = 54/196 (27%), Gaps = 28/196 (14%)
Query: 916 DENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFS 975
DE++ +K II GK++L+ TF G+
Sbjct: 1 DEDVLTTLKILIIGESGVGKSSLLLRFTD--DTFDPELAATI------------GVDFKV 46
Query: 976 KNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK 1035
K S++ N ++ I DT G F V+L+ D
Sbjct: 47 KTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNE-L 105
Query: 1036 LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA 1095
+ + + N + + + K + I SA
Sbjct: 106 ETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA---RKHSMLFIEASAKTCD------- 155
Query: 1096 RQGNMIPLFEAILKYV 1111
+ FE +++ +
Sbjct: 156 ---GVQCAFEELVEKI 168
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 63.6 bits (153), Expect = 7e-12
Identities = 28/168 (16%), Positives = 65/168 (38%), Gaps = 14/168 (8%)
Query: 68 RAPIVTIMGHVDHGKTSLLDYI--RKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG 125
+ I+G + GK++LL+ + +K ++ +A I + + +I
Sbjct: 4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 63
Query: 126 HE------AFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAK-ISGVPLIVAINKI 178
H +A + + D+ +++ + E + + P+I+A+NK+
Sbjct: 64 HMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKV 123
Query: 179 DKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
D + K DL+ + ISA+TG+ ++ + +
Sbjct: 124 D-----NVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 166
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 40.9 bits (94), Expect = 4e-04
Identities = 28/187 (14%), Positives = 57/187 (30%), Gaps = 24/187 (12%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
AI+ + GK+TL++ LL Q +I +R + T +
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQ------KISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPG 62
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
+ + V+ V+ +++ V K + I+ VN
Sbjct: 63 LHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDD-EMVLNKLREGKAPVILAVN 121
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
K+D + + + F ++ SA G N+ +
Sbjct: 122 KVDNVQEKADLLPHLQFLASQMNFL-------DIVPISAETGL----------NVDTIAA 164
Query: 1106 AILKYVP 1112
+ K++P
Sbjct: 165 IVRKHLP 171
|
| >d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II {Thermus thermophilus [TaxId: 274]} Length = 121 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus [TaxId: 274]
Score = 61.6 bits (149), Expect = 7e-12
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 1119 NNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGL 1178
N PL + Y+G++ R+ SG + S V K K ++ ++
Sbjct: 24 NGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTT----KGRKERVARLLRMHAN 79
Query: 1179 DRVLVNEALSGDIVLITGIEEICIGSTICDPSKPN 1213
R V E +GD+ + G++E G T+ P
Sbjct: 80 HREEVEELKAGDLGAVVGLKETITGDTLVGEDAPR 114
|
| >d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor 2 (eEF-2) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.2 bits (148), Expect = 1e-11
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 1317 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKER-VRLEYRIPSRGLIGFQNEFI 1375
EP + + E G I LN + G + + E ++ +P GF E
Sbjct: 1 EPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELR 60
Query: 1376 TLTRGTGLISHVFEEYAPFY 1395
T G VF+ ++
Sbjct: 61 QATGGQAFPQMVFDHWSTLG 80
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 61.1 bits (147), Expect = 3e-11
Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 21/165 (12%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVF-SEAGGITQHIGAYNVVTNHGSITFLDTPG----- 125
+ I+G + GK++LL+ + + ++ G T+ + + +V +DT G
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET 62
Query: 126 ---HEAFTAMRARGA-KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL 181
E R + DIV+ V+ A + + R+ + I L
Sbjct: 63 NDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILER-----------IKNKRYL 111
Query: 182 DINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ + I+E+ I + G + ISA G G+ KL E+I
Sbjct: 112 VVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESI 156
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 41.1 bits (95), Expect = 3e-04
Identities = 31/187 (16%), Positives = 66/187 (35%), Gaps = 29/187 (15%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 982
++ I+ + GK+TL++ LL +++ I I + I I +
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLL------NEDRAIVTDIPGTTRDVISEEIVI--RGILFRI 52
Query: 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 1042
T +T + G +ER L ++ +++ ++ P + ++ K +
Sbjct: 53 VDTAGVRSETNDLVERLG-IERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYL 111
Query: 1043 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 1102
VV VD + ++ + D ++ SAL G +
Sbjct: 112 VVI----------NKVDVVEKINEEEIKNKLGTDRHMVKISALKGE----------GLEK 151
Query: 1103 LFEAILK 1109
L E+I +
Sbjct: 152 LEESIYR 158
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.2 bits (147), Expect = 3e-11
Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 12/165 (7%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
+ +G + GKT+LL ++ + T H + + + T D GH
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLA---TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARR 59
Query: 132 MRARGAKVTDIVVLVVAADD-----GVMPQTREAIAHAKISGVPLIVAINKIDKL-DINL 185
+ + +V +V A D + A++ VP ++ NKID ++
Sbjct: 60 LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSE 119
Query: 186 DRIKQDLISEQVIPEEYGGAS---PFISISAKTGVGINKLLENIS 227
++ L + S G + + +S
Sbjct: 120 AELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.4 bits (148), Expect = 4e-11
Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 14/171 (8%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN--HGSITFLDTPGHEAF 129
V ++G GK++LL + I ++ + DT G E +
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 66
Query: 130 TAMRARGAKVTDIVVLVVAADD----GVMPQTREAIAHAKISGVPLIVAINKIDKLDINL 185
+ + + +LV + + + + S + +++ NK D
Sbjct: 67 RRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD------ 120
Query: 186 DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELK 236
R + + +++ FI SA + + +NI EI +
Sbjct: 121 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL--TEIYRIV 169
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 60.4 bits (145), Expect = 8e-11
Identities = 28/178 (15%), Positives = 55/178 (30%), Gaps = 10/178 (5%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPG----- 125
V ++G+ + GK+SLL + + + + V+ T D PG
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63
Query: 126 HEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL 185
E + VL+ D P ++ + +
Sbjct: 64 SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKV 123
Query: 186 DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELKAPVTTPA 243
D ++++ + G + +SA TG G+ L E + ++ P P
Sbjct: 124 DLLEEEAVKALADALAREGL-AVLPVSALTGAGLPALKEAL---HALVRSTPPPEMPK 177
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 58.2 bits (139), Expect = 5e-10
Identities = 35/177 (19%), Positives = 68/177 (38%), Gaps = 20/177 (11%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVF-SEAGGITQHI---------GAYNVVTNHGSITFL 121
V I+G + GK++L + + K + G+T+ + +V G
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62
Query: 122 DTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL 181
+ + + D+V+ VV G+ + + S V I+ NK + L
Sbjct: 63 QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 122
Query: 182 DINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS--LQAEILELK 236
+K +L S G I +SA+ + ++ +LE I L+ + L+L+
Sbjct: 123 REFEREVKPELYSL--------GFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLE 171
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 42.8 bits (99), Expect = 7e-05
Identities = 31/187 (16%), Positives = 55/187 (29%), Gaps = 26/187 (13%)
Query: 926 AIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGT 985
I+ + GK+TL + L+++ +++ R + +E C + N
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ 63
Query: 986 RINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045
I D VL ++D G + + K I+V N
Sbjct: 64 DIISQKMKEVTLNMIR------EADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVAN 117
Query: 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFE 1105
K + V + L I SA H N+ + E
Sbjct: 118 KAENLREFEREVKPELYSLGFG----------EPIPVSAEHNI----------NLDTMLE 157
Query: 1106 AILKYVP 1112
I+K +
Sbjct: 158 TIIKKLE 164
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 56.6 bits (135), Expect = 1e-09
Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 10/164 (6%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
+T++G GKT+ ++ I F+E T + + +I D G F +
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQ--FNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRS 62
Query: 132 MRARGAKVTDIVVLVVA-----ADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD 186
M R + +V +V + + + ++ G+P++V NK D +
Sbjct: 63 MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE 122
Query: 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQA 230
+ + ++ I + SIS K I+ L+ + +
Sbjct: 123 KELIEKMNLSAIQDR---EICCYSISCKEKDNIDITLQWLIQHS 163
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Score = 56.7 bits (135), Expect = 2e-09
Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 15/170 (8%)
Query: 70 PIVTIMGHVDHGKTSLLDYIR--KTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG-- 125
P + + G + GK+S ++ + K S G TQ + Y + +
Sbjct: 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAK 83
Query: 126 --------HEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINK 177
+ VV +V + K G+P+IV K
Sbjct: 84 VSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATK 143
Query: 178 IDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
DK+ ++ + + I S++T G ++ I
Sbjct: 144 ADKIPKGKWDKHAKVVRQTL---NIDPEDELILFSSETKKGKDEAWGAIK 190
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 56.0 bits (134), Expect = 2e-09
Identities = 25/165 (15%), Positives = 47/165 (28%), Gaps = 6/165 (3%)
Query: 72 VTIMGHVDHGKTSLLDYI--RKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAF 129
+ I+G+ GKTS L F GI + + DT G E +
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY 67
Query: 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIK 189
+ + +L+ + + + + + + D
Sbjct: 68 RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERV 127
Query: 190 QDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILE 234
+ + + G F SAK + + + E L I E
Sbjct: 128 VSSERGRQLADHLG--FEFFEASAKDNINVKQTFE--RLVDVICE 168
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.2 bits (98), Expect = 1e-04
Identities = 22/167 (13%), Positives = 38/167 (22%), Gaps = 18/167 (10%)
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE 981
+ K II + GKT+ + +F GI K
Sbjct: 5 MFKILIIGNSSVGKTSFLFRYAD--DSFTPAFVST------------VGIDFKVKTIYRN 50
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI 1041
++ I DT G + +L+ D +K
Sbjct: 51 DKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN 110
Query: 1042 VVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088
V + + ++ + L F SA
Sbjct: 111 AQVLLVGNKCDMEDE----RVVSSERGRQLADHLGFEFFEASAKDNI 153
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.7 bits (133), Expect = 3e-09
Identities = 23/165 (13%), Positives = 44/165 (26%), Gaps = 6/165 (3%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAF 129
++G+ GK+ LL + I G+ + + DT G E F
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 67
Query: 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIK 189
++ + +LV + I +
Sbjct: 68 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADRE 127
Query: 190 QDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILE 234
+ +E F+ SA TG + + + +IL
Sbjct: 128 VTFLEASRFAQENE--LMFLETSALTGENVEEAFVQCA--RKILN 168
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 0.002
Identities = 29/171 (16%), Positives = 50/171 (29%), Gaps = 26/171 (15%)
Query: 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE 981
L K +I + GK+ L+ + F+ + N + SK ++
Sbjct: 5 LFKFLVIGNAGTGKSCLLHQFIE--KKFKDDSNHTIGVE------------FGSKIINVG 50
Query: 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP- 1040
++ I DT G F LL+ D ++
Sbjct: 51 GKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN 110
Query: 1041 ---IVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088
I+ NK D R F + ++ + + TSAL G
Sbjct: 111 IVIILCGNKKDLDADREVT--------FLEASRFAQENELMFLETSALTGE 153
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 55.3 bits (132), Expect = 5e-09
Identities = 29/165 (17%), Positives = 49/165 (29%), Gaps = 9/165 (5%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG-SITFLDTPG-HEAF 129
V ++G GK++LL + ++ T V T+ G S D PG E
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGA 63
Query: 130 TAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAK---ISGVPLIVAINKIDKLDINLD 186
G + + + E L ++ + +
Sbjct: 64 HQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIV 123
Query: 187 RIKQDLISEQVIPEE----YGGASPFISISAKTGVGINKLLENIS 227
K D+ E P ISA T G+ +LL ++
Sbjct: 124 ANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVA 168
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 55.1 bits (131), Expect = 5e-09
Identities = 23/162 (14%), Positives = 49/162 (30%), Gaps = 3/162 (1%)
Query: 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGH 126
+ V I+G + GK++LL+ + V S T+ + I F+DTPG
Sbjct: 4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 63
Query: 127 EAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD 186
L + R + + + + +
Sbjct: 64 HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGN 123
Query: 187 RIKQDLISEQVI--PEEYGGASPFISISAKTGVGINKLLENI 226
++ E+ + E + +SA + +L ++
Sbjct: 124 KLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADL 165
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 54.3 bits (129), Expect = 8e-09
Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 11/161 (6%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
+ ++G + GKT++L +V + T + + D G ++ +
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDV---DTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRS 61
Query: 132 MRARGAKVTDIVVLVVAADDGVMPQT-----REAIAHAKISGVPLIVAINKIDKLDINLD 186
+ TD ++ VV + D Q + + +++G L++ NK D
Sbjct: 62 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC 121
Query: 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
Q+ + I + SA TG + ++ +
Sbjct: 122 NAIQEALELDSIRSHH---WRIQGCSAVTGEDLLPGIDWLL 159
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.1 bits (129), Expect = 1e-08
Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 5/158 (3%)
Query: 72 VTIMGHVDHGKTSLLD-YIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF--LDTPGHEA 128
V ++G GKT LL + + + + + + + DT G E
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER 68
Query: 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRI 188
F ++ + ++L+ + +A VA+ + +
Sbjct: 69 FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHER 128
Query: 189 KQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ + +EYG PF+ SAKTG+ ++ I
Sbjct: 129 VVKREDGEKLAKEYG--LPFMETSAKTGLNVDLAFTAI 164
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 2e-08
Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 15/177 (8%)
Query: 67 VRAPIVTIMGHVDHGKTSLLD-YIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG 125
+R +V I+G GKT LL + ++ V + DT G
Sbjct: 1 IRKKLV-IVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 59
Query: 126 HEAFTAMRARGAKVTDIVVLVVAAD-----DGVMPQTREAIAHAKISGVPLIVAINKIDK 180
E + +R TD++++ + D + + + + H VP+I+ NK D
Sbjct: 60 LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 118
Query: 181 LDINLDRIKQDLISEQVIPEEYG-------GASPFISISAKTGVGINKLLENISLQA 230
+ R + + ++ + E G GA ++ SAKT G+ ++ E + A
Sbjct: 119 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 52.3 bits (124), Expect = 5e-08
Identities = 26/158 (16%), Positives = 52/158 (32%), Gaps = 5/158 (3%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
+ I+G GKT++L ++ T + + + D G +
Sbjct: 20 ILILGLDGAGKTTILYRLQIG---EVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRP 76
Query: 132 MRARGAKVTDIVVLVVAADDGVMPQT--REAIAHAKISGVPLIVAINKIDKLDINLDRIK 189
T V+ VV + D T +E + + + +K D
Sbjct: 77 YWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSA 136
Query: 190 QDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
++ E + E + ++ SA G GI + L+ +
Sbjct: 137 SEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLI 174
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 52.0 bits (123), Expect = 5e-08
Identities = 27/161 (16%), Positives = 60/161 (37%), Gaps = 11/161 (6%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
+ ++G GKT++L ++ +V + T V + S T D G +
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIRP 59
Query: 132 MRARGAKVTDIVVLVVAADD-----GVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD 186
+ + T ++ VV ++D + +A ++ L+V NK D +
Sbjct: 60 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA 119
Query: 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
++ + + + A +G G+ + L+ +S
Sbjct: 120 A---EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 157
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (122), Expect = 7e-08
Identities = 29/161 (18%), Positives = 49/161 (30%), Gaps = 12/161 (7%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFL--DTPGHEAF 129
I+G + GK+ LL + + I G + + I DT G E F
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 66
Query: 130 TAMRARGAKVTDIVVLVVAADDG----VMPQTREAIAHAKISGVPLIVAINKIDKLDINL 185
A+ + ++V + + +I+ NK D
Sbjct: 67 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRD 126
Query: 186 DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
++ + EE G F+ SAKTG +
Sbjct: 127 VTYEEA----KQFAEENG--LLFLEASAKTGENVEDAFLEA 161
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 50.3 bits (119), Expect = 2e-07
Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 11/161 (6%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
+ ++G + GKT+LL + ++ TQ +V + + D G
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHIT---PTQGFNIKSVQSQGFKLNVWDIGGQRKIRP 75
Query: 132 MRARGAKVTDIVVLVVAADDGVMPQTREAI-----AHAKISGVPLIVAINKIDKLDINLD 186
+ TDI++ V+ + D + K+S VP+++ NK D L
Sbjct: 76 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 135
Query: 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
+ ++ I + S SA TG G+ + +
Sbjct: 136 SEIAEGLNLHTIRDR---VWQIQSCSALTGEGVQDGMNWVC 173
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 49.7 bits (117), Expect = 2e-07
Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 3/156 (1%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130
V I G + GK+SLL+ + + ++ G T+ + ++ + + +DT G +
Sbjct: 4 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 63
Query: 131 AMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQ 190
R + A M A P +A R K
Sbjct: 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITV-VRNKA 122
Query: 191 DLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
D+ E + E G I +SA+TG G++ L ++
Sbjct: 123 DITGETLGMSEVNGH-ALIRLSARTGEGVDVLRNHL 157
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 50.1 bits (118), Expect = 3e-07
Identities = 30/170 (17%), Positives = 63/170 (37%), Gaps = 17/170 (10%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
+ +G + GKT+LL ++ + T H + + + T D GH
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDRLGQHV---PTLHPTSEELTIAGMTFTTFDLGGHIQARR 72
Query: 132 M-RARGAKVTDIVVLVVAADDGVMPQTREAIA----HAKISGVPLIVAINKIDK-LDINL 185
+ + + IV LV AD + +++E + I+ VP+++ NKID+ I+
Sbjct: 73 VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISE 132
Query: 186 DRIKQDLISEQVIPEEYGGAS--------PFISISAKTGVGINKLLENIS 227
+R+++ + + S G + ++
Sbjct: 133 ERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 182
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 49.2 bits (116), Expect = 6e-07
Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 5/163 (3%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
V I+G + GKT++L VV + T +V N+ D G E+ +
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEVVHT---SPTIGSNVEEIVINNTRFLMWDIGGQESLRS 74
Query: 132 MRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKIS--GVPLIVAINKIDKLDINLDRIK 189
T+ V++VV + D + ++ + + +K D+
Sbjct: 75 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV 134
Query: 190 QDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEI 232
++ + + A TG G+ + LE + + +I
Sbjct: 135 AEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 177
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.3 bits (122), Expect = 6e-07
Identities = 31/267 (11%), Positives = 73/267 (27%), Gaps = 21/267 (7%)
Query: 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 982
+ A+ GK++ I+ L + + ++
Sbjct: 57 LNVAVTGETGSGKSSFINTLR------------GIGNEEEGAAKTGVVEVTMERHPYKHP 104
Query: 983 NGTRINIIDTPGHADFGGEVERILSMVDN---VLLLIDAVEGPMPQTRFVTRKALKLGFK 1039
N + D PG + L + +I + + + + +
Sbjct: 105 NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKE 164
Query: 1040 PIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL--DFPVIYTSALHGYANENSKARQ 1097
V K+D TFD L F + + N
Sbjct: 165 FYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCH 224
Query: 1098 GNMIPLFEAILKYVPVHKDN----SNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQD 1153
+ L + ++ +P++K + S + +I + +I + + + +
Sbjct: 225 YDFPVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPS 284
Query: 1154 VVIMNGPDDKPNKAKINQIRVFKGLDR 1180
+ + D + K + R G+D
Sbjct: 285 LTFLLDSDLETLKKSMKFYRTVFGVDE 311
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.7 bits (110), Expect = 2e-05
Identities = 31/237 (13%), Positives = 69/237 (29%), Gaps = 36/237 (15%)
Query: 64 ESLVRAPI-VTIMGHVDHGKTSLLDYIR-----KTNVVFSEAGGITQHIGAYNVVTNHGS 117
+ + + + V + G GK+S ++ +R + + +T N +
Sbjct: 50 KEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER-HPYKHPNIPN 108
Query: 118 ITFLDTPG-----HEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLI 172
+ F D PG T + D +++ + + +
Sbjct: 109 VVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIII--SATRFKKNDIDIAKAISMMKKEFY 166
Query: 173 VAINKIDK-LDINLDRIKQDLISEQVIPE----------EYGGASP---FISISAKTGVG 218
K+D + D Q E+V+ + E G A P +S
Sbjct: 167 FVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYD 226
Query: 219 INKLLENI-----SLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLR 270
L++ + + + P T + +IE + K + + +
Sbjct: 227 FPVLMDKLISDLPIYKRHNFMVSLPNITDS---VIEKKRQFLKQRIWLEGFAADLVN 280
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (109), Expect = 6e-06
Identities = 24/161 (14%), Positives = 48/161 (29%), Gaps = 12/161 (7%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITF--LDTPGHEAF 129
+ ++G+ GK+ LL I V + ++ DT G E F
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF 68
Query: 130 TAMRARGAKVTDIVVLVVAAD----DGVMPQTREAIAHAKISGVPLIVAINKIDKLDINL 185
+ + + + +++V + + I S V ++ NK D D +
Sbjct: 69 RTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRV 128
Query: 186 DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ PF+ SA + +
Sbjct: 129 VEY------DVAKEFADANKMPFLETSALDSTNVEDAFLTM 163
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 7e-06
Identities = 32/176 (18%), Positives = 54/176 (30%), Gaps = 16/176 (9%)
Query: 72 VTIMGHVDHGKTSLLD-YIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130
++G GKT LL Y + V ++ DT G E +
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD 67
Query: 131 AMRARGAKVTDIVVLVVAADDG-----VMPQTREAIAHAKISGVPLIVAINKIDKLDINL 185
+R TD+ ++ + V + + H P+I+ K+D D
Sbjct: 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKD 126
Query: 186 DRIKQDLISEQVIPEEYG-------GASPFISISAKTGVGINKLLENISLQAEILE 234
K I G GA ++ SA T G+ + + +L
Sbjct: 127 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD--EAIRAVLC 180
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 1e-05
Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 18/177 (10%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGS---ITFLDTPGHEA 128
++G GKT LL + N F E T VT G + DT G E
Sbjct: 12 CVVVGDGAVGKTCLL--MSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69
Query: 129 FTAMRARGAKVTDIVVLVVAADDGVM----PQTREAIAHAKISGVPLIVAINKIDKLDIN 184
+ +R +TD+ ++ + + + VP ++ +ID D
Sbjct: 70 YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP 129
Query: 185 LDRIKQDLISEQVIPEEYG-------GASPFISISAKTGVGINKLLENISLQAEILE 234
+ + + E+ I E G GA ++ SA T G+ + + IL
Sbjct: 130 KTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE--AIIAILT 184
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 44.7 bits (104), Expect = 1e-05
Identities = 29/161 (18%), Positives = 53/161 (32%), Gaps = 11/161 (6%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
+ I+G GKT++L ++ VV + T V + D G +
Sbjct: 8 ILILGLDGAGKTTILYRLQVGEVVTT---IPTIGFNVETVTYKNLKFQVWDLGGLTSIRP 64
Query: 132 MRARGAKVTDIVVLVVAADDGVMPQTR-----EAIAHAKISGVPLIVAINKIDKLDINLD 186
TD V+ VV + D + ++ L+V NK D
Sbjct: 65 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ---A 121
Query: 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENIS 227
++ + +P SA G G+++ +E +
Sbjct: 122 MTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 162
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.0 bits (97), Expect = 1e-04
Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 10/170 (5%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSE----AGGITQHIGAYNVVTNHGSITFLDTPGHE 127
+ ++G GK+S++ +R + F+E G + + DT G E
Sbjct: 6 LVLLGEAAVGKSSIV--LRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 128 AFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHAKISGVPLIVAINKIDKLDINLD 186
F ++ + ++V + R + I+ +K+D+ +
Sbjct: 64 RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQE 123
Query: 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQAEILELK 236
++ + E+ F SAKTG +N + I E + LK
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGI---GEKIPLK 170
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (98), Expect = 1e-04
Identities = 24/168 (14%), Positives = 48/168 (28%), Gaps = 15/168 (8%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG------------SIT 119
+ +G GKT+ L + VV N +
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 67
Query: 120 FLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKID 179
DT G E F ++ + +L+ + +
Sbjct: 68 LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLI 127
Query: 180 KLDINLDRIKQDLISE-QVIPEEYGGASPFISISAKTGVGINKLLENI 226
+L ++ + + + ++YG P+ SA TG + K +E +
Sbjct: 128 GNKADLPDQREVNERQARELADKYG--IPYFETSAATGQNVEKAVETL 173
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 41.1 bits (95), Expect = 3e-04
Identities = 27/161 (16%), Positives = 61/161 (37%), Gaps = 12/161 (7%)
Query: 72 VTIMGHVDHGKTSLLD-YIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130
V ++G GK++L ++ V E + + I LDT G E +
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 66
Query: 131 AMRARGAKVTDIVVLVVAADDGVMPQT-----REAIAHAKISGVPLIVAINKIDKLDINL 185
A+R + + + V + + + + + VP ++ NK D D
Sbjct: 67 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ 126
Query: 186 DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+++ + +++ ++ SAKT ++K+ ++
Sbjct: 127 VSVEEA----KNRADQWN--VNYVETSAKTRANVDKVFFDL 161
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (94), Expect = 4e-04
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 12/161 (7%)
Query: 72 VTIMGHVDHGKTSLLD-YIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT 130
V ++G GK++L ++ T + + + V ++ + LDT G E F
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA 65
Query: 131 AMRARGAKVTDIVVLVVAADDGVM-----PQTREAIAHAKISGVPLIVAINKIDKLDINL 185
+MR K +LV + + P + I + VP+I+ NK+D
Sbjct: 66 SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESERE 125
Query: 186 DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ + + EE+G PF+ SAK+ +++L I
Sbjct: 126 VSSSEG----RALAEEWG--CPFMETSAKSKTMVDELFAEI 160
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 5e-04
Identities = 34/173 (19%), Positives = 53/173 (30%), Gaps = 16/173 (9%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFL---DTPGHEA 128
++G GKT LL I T F T V G L DT G E
Sbjct: 6 CVVVGDGAVGKTCLL--ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 129 FTAMRARGAKVTDIVVLVVAADDGVM----PQTREAIAHAKISGVPLIVAINKIDKLDIN 184
+ +R TD+ ++ + + P ++ +ID D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 185 LDRIKQDLISEQVIPEEYG-------GASPFISISAKTGVGINKLLENISLQA 230
K ++ I E A ++ SA T G+ + + L A
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.1 bits (92), Expect = 7e-04
Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 13/169 (7%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEA-----GGITQHIGAYNVVTNHGSITFLDTPGH 126
V I+G GKTSL+ R N +S+ G ++ DT G
Sbjct: 5 VIILGDSGVGKTSLM--HRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62
Query: 127 EAFTAMRARGAKVTDIVVLVVAAD-----DGVMPQTREAIAHAKISGVPLIVAINKIDKL 181
E F ++ + D VLV + + E + HA ++ + +K+
Sbjct: 63 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122
Query: 182 DINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENISLQA 230
D + S Q + + G P SAK + ++ E I+ A
Sbjct: 123 DAEESKKIVSEKSAQELAKSLG-DIPLFLTSAKNAINVDTAFEEIARSA 170
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 0.001
Identities = 30/163 (18%), Positives = 54/163 (33%), Gaps = 16/163 (9%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFL----DTPGHE 127
I+G GK+ LL ++ T+ F +T + + N DT G E
Sbjct: 6 YIIIGDTGVGKSCLL--LQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63
Query: 128 AFTAMRARGAKVTDIVVLVVAADDGVMPQT----REAIAHAKISGVPLIVAINKIDKLDI 183
+F ++ + +LV E S + +++ NK D
Sbjct: 64 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD---- 119
Query: 184 NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
++D+ E+ F+ SAKT + + N
Sbjct: 120 --LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT 160
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (86), Expect = 0.003
Identities = 21/155 (13%), Positives = 42/155 (27%), Gaps = 1/155 (0%)
Query: 72 VTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131
V ++G GK++L + + V S+ D +
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRW 63
Query: 132 MRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQD 191
+ + D V+V + D + + + +L R ++
Sbjct: 64 LPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREV 123
Query: 192 LISEQVIPEEYGGASPFISISAKTGVGINKLLENI 226
+ E FI SA + L E +
Sbjct: 124 SVDEGRACAVVFDC-KFIETSAALHHNVQALFEGV 157
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1527 | |||
| d1k8wa5 | 242 | Pseudouridine synthase II TruB {Escherichia coli [ | 100.0 | |
| d1sgva2 | 233 | Pseudouridine synthase II TruB {Mycobacterium tube | 100.0 | |
| d1r3ea2 | 228 | Pseudouridine synthase II TruB {Thermotoga maritim | 100.0 | |
| d2apoa2 | 230 | Pseudouridine synthase II TruB {Archaeon Methanoco | 100.0 | |
| d2ey4a2 | 245 | Pseudouridine synthase II TruB {Archaeon Pyrococcu | 100.0 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 100.0 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.98 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.97 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.97 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.97 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.96 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.95 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.95 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.94 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.92 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.92 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.91 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.91 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.89 | |
| d1g7sa3 | 131 | Initiation factor IF2/eIF5b, domain 3 {Archaeon Me | 99.88 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.88 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.87 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.86 | |
| d1josa_ | 100 | Ribosome-binding factor A, RbfA {Haemophilus influ | 99.86 | |
| d1pa4a_ | 96 | Ribosome-binding factor A, RbfA {Mycoplasma pneumo | 99.85 | |
| d1kkga_ | 108 | Ribosome-binding factor A, RbfA {Escherichia coli | 99.85 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.84 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.84 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.84 | |
| d1d1na_ | 99 | Initiation factor IF2/eIF5b, domains 2 and 4 {Baci | 99.84 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.83 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.82 | |
| d2e7ga1 | 116 | Ribosome-binding factor A, RbfA {Human (Homo sapie | 99.82 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.81 | |
| d2bv3a5 | 89 | Elongation factor G (EF-G) {Thermus thermophilus [ | 99.8 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.8 | |
| d2dyja1 | 91 | Ribosome-binding factor A, RbfA {Thermus thermophi | 99.8 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.79 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.79 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.79 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.78 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.78 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.78 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.77 | |
| d2dy1a5 | 96 | Elongation factor G (EF-G) {Thermus thermophilus, | 99.77 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.77 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.76 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.76 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.76 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.76 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.76 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.76 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.75 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.75 | |
| d2bv3a1 | 121 | Elongation factor G (EF-G), domain II {Thermus the | 99.75 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.75 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.75 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.75 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.75 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.74 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.74 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.74 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.74 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.74 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.74 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.74 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.74 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.74 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.74 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.74 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.73 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.73 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.73 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.73 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.73 | |
| d2dy1a1 | 103 | Elongation factor G (EF-G), domain II {Thermus the | 99.73 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.73 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.73 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.72 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.72 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.72 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.72 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.71 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.71 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.71 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.71 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.71 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.7 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.7 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.7 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.7 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.7 | |
| d1n0ua5 | 117 | Elongation factor 2 (eEF-2) {Baker's yeast (Saccha | 99.69 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.69 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.69 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.68 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.67 | |
| d1n0ua1 | 138 | Elongation factor 2 (eEF-2), domain II {Baker's ye | 99.67 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.67 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.66 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.65 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.65 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.63 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.63 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.62 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.62 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.62 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.61 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.6 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.59 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.57 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.57 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.57 | |
| d2dy1a4 | 77 | Elongation factor G (EF-G) {Thermus thermophilus, | 99.56 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.56 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.54 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.53 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.52 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.51 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.51 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.51 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.5 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.49 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.49 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.49 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.48 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.47 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.47 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.46 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.46 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.46 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.44 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.44 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.44 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.44 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.43 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.42 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.42 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.41 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.41 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.4 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.4 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.4 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.39 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.39 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.38 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.38 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.37 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.36 | |
| d2bv3a4 | 75 | Elongation factor G (EF-G) {Thermus thermophilus [ | 99.36 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.36 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.35 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.35 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.34 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.33 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.33 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.33 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.33 | |
| d1n0ua4 | 79 | Elongation factor 2 (eEF-2) {Baker's yeast (Saccha | 99.32 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.32 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.32 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.29 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.29 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.28 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.27 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.26 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.26 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.26 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.24 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.22 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.2 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.19 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.18 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.16 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.14 | |
| d1g7sa1 | 101 | Initiation factor IF2/eIF5b, domains 2 and 4 {Arch | 99.12 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.11 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.06 | |
| d1f60a1 | 94 | Elongation factor eEF-1alpha, domain 2 {Baker's ye | 99.0 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 98.95 | |
| d1jnya1 | 95 | Elongation factor eEF-1alpha, domain 2 {Archaeon S | 98.94 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 98.9 | |
| d2c78a1 | 100 | Elongation factor Tu (EF-Tu), domain 2 {Thermus th | 98.89 | |
| d1efca1 | 92 | Elongation factor Tu (EF-Tu), domain 2 {Escherichi | 98.89 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 98.82 | |
| d1r5ba1 | 95 | Eukaryotic peptide chain release factor ERF2, post | 98.81 | |
| d1d2ea1 | 98 | Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos t | 98.81 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 98.75 | |
| d1zunb1 | 92 | Sulfate adenylate transferase subunit cysN/C, EF-T | 98.71 | |
| d1wb1a1 | 92 | Elongation factor SelB, domains 2 and 4 {Methanoco | 98.66 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 98.65 | |
| d1kk1a1 | 121 | Initiation factor eIF2 gamma subunit, domain II {A | 98.56 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 98.52 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.5 | |
| d1xe1a_ | 91 | Hypothetical protein PF0907 {Pyrococcus furiosus [ | 98.45 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 98.4 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.36 | |
| d1s0ua1 | 118 | Initiation factor eIF2 gamma subunit, domain II {A | 98.35 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 98.34 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.27 | |
| d2bv3a1 | 121 | Elongation factor G (EF-G), domain II {Thermus the | 98.18 | |
| d2dy1a1 | 103 | Elongation factor G (EF-G), domain II {Thermus the | 98.14 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.1 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.1 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 98.1 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.05 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 98.05 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 98.02 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 97.98 | |
| d2qn6a1 | 114 | Initiation factor eIF2 gamma subunit, domain II {S | 97.95 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 97.86 | |
| d1xe1a_ | 91 | Hypothetical protein PF0907 {Pyrococcus furiosus [ | 97.7 | |
| d1efca1 | 92 | Elongation factor Tu (EF-Tu), domain 2 {Escherichi | 97.68 | |
| d1f60a1 | 94 | Elongation factor eEF-1alpha, domain 2 {Baker's ye | 97.67 | |
| d1g7sa2 | 128 | Initiation factor IF2/eIF5b, domains 2 and 4 {Arch | 97.65 | |
| d1jnya1 | 95 | Elongation factor eEF-1alpha, domain 2 {Archaeon S | 97.63 | |
| d1r5ba1 | 95 | Eukaryotic peptide chain release factor ERF2, post | 97.57 | |
| d1d2ea1 | 98 | Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos t | 97.56 | |
| d2c78a1 | 100 | Elongation factor Tu (EF-Tu), domain 2 {Thermus th | 97.37 | |
| d1n0ua1 | 138 | Elongation factor 2 (eEF-2), domain II {Baker's ye | 97.37 | |
| d1kk1a1 | 121 | Initiation factor eIF2 gamma subunit, domain II {A | 97.27 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 97.26 | |
| d1wb1a1 | 92 | Elongation factor SelB, domains 2 and 4 {Methanoco | 97.21 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.21 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.09 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.07 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.0 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.94 | |
| d1zunb1 | 92 | Sulfate adenylate transferase subunit cysN/C, EF-T | 96.87 | |
| d1s0ua1 | 118 | Initiation factor eIF2 gamma subunit, domain II {A | 96.87 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.83 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.81 | |
| d1vioa1 | 174 | Ribosomal small subunit pseudouridine 516 synthase | 96.72 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.67 | |
| d2qn6a1 | 114 | Initiation factor eIF2 gamma subunit, domain II {S | 96.67 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.6 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 96.53 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.47 | |
| d1g7sa1 | 101 | Initiation factor IF2/eIF5b, domains 2 and 4 {Arch | 96.44 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.34 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.27 | |
| d1g7sa2 | 128 | Initiation factor IF2/eIF5b, domains 2 and 4 {Arch | 96.19 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.18 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 95.87 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.83 | |
| d1kska4 | 172 | Ribosomal small subunit pseudouridine 516 synthase | 95.74 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 95.55 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.48 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.01 | |
| d1v9fa_ | 250 | Ribosomal large subunit pseudouridine synthase D, | 94.77 | |
| d1v9ka_ | 227 | Ribosomal large subunit pseudouridine synthase C, | 94.45 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 94.43 | |
| d1d1na_ | 99 | Initiation factor IF2/eIF5b, domains 2 and 4 {Baci | 94.16 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.3 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.89 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 92.85 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.41 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 92.12 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 92.12 | |
| d1vi7a2 | 71 | Hypothetical protein YigZ, C-terminal domain {Esch | 92.06 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 91.57 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 91.23 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 91.03 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 90.95 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 90.76 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 90.52 | |
| d1t95a3 | 73 | Hypothetical protein AF0491, C-terminal domain {Ar | 90.39 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 89.86 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 89.38 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 89.37 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 88.2 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 88.12 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 87.82 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 87.73 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 87.53 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 87.03 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 86.79 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 86.66 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 86.55 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 86.42 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 86.2 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 86.15 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 85.96 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 85.84 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 85.58 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 85.3 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 85.11 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 85.01 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 84.97 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 84.85 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 84.57 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 84.46 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 84.37 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 84.21 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 84.17 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 84.16 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 84.11 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 84.08 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 84.07 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 83.94 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 83.92 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 83.83 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 83.7 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 83.5 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 83.49 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 83.47 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 83.42 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 83.41 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 83.29 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 83.28 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 83.2 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 83.12 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 83.0 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 82.89 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 82.8 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 82.73 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 82.73 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 82.67 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 82.59 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 82.52 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 82.34 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 82.27 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 82.0 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 81.95 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 81.92 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 81.78 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 81.72 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 81.63 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 81.53 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 81.45 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 81.41 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 81.4 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 81.2 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 81.19 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 81.01 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 80.81 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 80.79 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 80.63 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 80.45 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 80.32 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 80.32 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 80.12 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 80.12 |
| >d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase II TruB domain: Pseudouridine synthase II TruB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-65 Score=568.38 Aligned_cols=214 Identities=49% Similarity=0.853 Sum_probs=208.3
Q ss_pred ceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCC
Q psy1758 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 740 (1527)
Q Consensus 661 ~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~ 740 (1527)
.|||||+||||+|||||+|++++|+.|+.+|+||+|||||+||||||||+|+|||+++|+++.+|+|+++++||.+|||+
T Consensus 2 ~~~G~l~v~KP~g~tS~~vv~~~k~~l~~kKvGh~GTLDP~AsGvL~i~ig~aTK~~~~~~~~~K~Y~~~i~~G~~TdT~ 81 (242)
T d1k8wa5 2 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTS 81 (242)
T ss_dssp CCCEEEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGTHHHHTSCEEEEEEEEETEEESSS
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHhCCCcCCcCCcCCCcccceEEEEEchhhhhhhhhhhhhheeeEEEEECcccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeE
Q psy1758 741 DIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYL 820 (1527)
Q Consensus 741 d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~ 820 (1527)
|.+|+|++++++ +++.+++++++++|+|.++|+||+|||+|+||||||+|||+|+++++++|.+.||++++++++.|.+
T Consensus 82 D~~G~i~~~~~~-~~~~~~i~~~l~~f~G~~~Q~PP~~SAvKv~GkraY~lAR~g~~v~~~~r~i~i~~l~~~~~~~~~~ 160 (242)
T d1k8wa5 82 DADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNEL 160 (242)
T ss_dssp BTTSCEEEECCC-CCCHHHHHHHHHTTSEEEEECCCSSSCCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEEEEETTEE
T ss_pred cchhhhcccccc-cchhHHHHHhHHhccccEEeeccHHHHHHHhhHHHHHHHHhhcccccceeEEEeEeeeeccccccEE
Confidence 999999998765 5689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhh
Q psy1758 821 TLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYS 875 (1527)
Q Consensus 821 ~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~ 875 (1527)
.|+|+||+||||||||||||++|||+|||+.||||++|+|++++|++++++.+..
T Consensus 161 ~f~v~cskGTYIRsLa~DlG~~Lg~~a~l~~LrRt~~G~f~~~~a~~l~~l~~~~ 215 (242)
T d1k8wa5 161 ELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELV 215 (242)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHTSCEEEEEEEEEEETTCCGGGCEEHHHHHHHH
T ss_pred EEEEEEccchHHHHHHHHHHHhcCCCEEEeEEEEeeECCCCHHHCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999997643
|
| >d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase II TruB domain: Pseudouridine synthase II TruB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=9.7e-66 Score=566.45 Aligned_cols=212 Identities=34% Similarity=0.595 Sum_probs=179.7
Q ss_pred eeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCC
Q psy1758 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 741 (1527)
Q Consensus 662 ~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d 741 (1527)
-+|||+||||.|||||+||+++|+.|+.+|+||+|||||+||||||||+|++||+++|+++.+|+|++++.||.+|||+|
T Consensus 3 ~~G~l~v~KP~G~TS~~~v~~vk~~~~~kKvGh~GTLDP~AtGvL~i~ig~aTK~~~~~~~~~K~Y~~~~~lG~~TdT~D 82 (233)
T d1sgva2 3 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTED 82 (233)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGTTTSCEEEEEEEEETEEETTSB
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHhCcCccccCcCCCCcceeeEEEEechhhhhhhhhccCceEEEEEEEEcccccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeC----
Q psy1758 742 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI---- 817 (1527)
Q Consensus 742 ~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~---- 817 (1527)
++|+|+++.++.+++.++|++++++|+|+++|+||+|||+|+||||||+|||+|+.+++++|+++||++++++|+.
T Consensus 83 ~~G~vi~~~~~~~~t~~~i~~~l~~f~G~~~Q~PP~ySAvKv~GkraYelAR~G~~~~~~~r~v~I~~~~l~~~~~~~~~ 162 (233)
T d1sgva2 83 AEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQL 162 (233)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHTCEEC----------------------------CCCCCCEEEEEEEEEEEEETTE
T ss_pred cccceeeeeccccchHHHHHHHHHhcCCcEEeeccHHHHhhccChHHHHHHHhCCcccccccceeeeeEEEEeeccCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CeEEEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHh
Q psy1758 818 PYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIK 873 (1527)
Q Consensus 818 ~~~~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~ 873 (1527)
|.|+|+|+||+||||||||||||.+|||+|||++||||++|+|+++||++++++.+
T Consensus 163 ~~~~~~v~Cs~GTYIRsLa~DiG~~Lg~~A~l~~LrRt~~G~F~~~~a~~l~~l~~ 218 (233)
T d1sgva2 163 IDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAE 218 (233)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHHTSCEEEEEEEEEEETTEEGGGCBCHHHHHH
T ss_pred eEEEEEEEECchhHHHHHHHHHHHHhCCcEEEEEeEeeeEcCCCHHHccCHHHHhc
Confidence 68999999999999999999999999999999999999999999999999999965
|
| >d1r3ea2 d.265.1.2 (A:10-237) Pseudouridine synthase II TruB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase II TruB domain: Pseudouridine synthase II TruB species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.3e-64 Score=557.34 Aligned_cols=227 Identities=36% Similarity=0.562 Sum_probs=215.7
Q ss_pred ceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCC
Q psy1758 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 740 (1527)
Q Consensus 661 ~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~ 740 (1527)
+.||||+||||+|||||+|++++|+.|+.+|+||+|||||+||||||+|+|+|||+++|+++.+|+|++++.||.+|||+
T Consensus 1 m~~G~l~i~Kp~g~tS~~~v~~vk~~l~~~KvGh~GTLDP~AsGvL~i~ig~~tkl~~~~~~~~K~Y~~~~~lG~~TdT~ 80 (228)
T d1r3ea2 1 MKHGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLKKVYWVKMRLGLITETF 80 (228)
T ss_dssp CCCEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGGTTSCEEEEEEEEETEEESSS
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHhCCCccCcCcccCCcceeeEEEEEcccccchhhhhcccceEEEEEEEecccccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeE
Q psy1758 741 DIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYL 820 (1527)
Q Consensus 741 d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~ 820 (1527)
|.+|+|++++... ++.++|+++|++|+|.++|.||+|||+|+||+|||+|||+|+.+++++|.+.||++++++|+.|.+
T Consensus 81 D~~G~i~~~~~~~-~~~~~i~~~l~~f~G~~~Q~pP~ySA~Kv~Gkr~Y~lAR~g~~~~~~~r~v~I~~~~l~~~~~~~~ 159 (228)
T d1r3ea2 81 DITGEVVEERECN-VTEEEIREAIFSFVGEYDQVPPAYSAKKYKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDV 159 (228)
T ss_dssp BTTSCEEEECCCC-CCHHHHHHHHHSSSEEEEECCCSSSSCEETTEEHHHHHHTTCCCCCCCEEEEEEEEEEEEEETTEE
T ss_pred ccCCccceecccc-hhHHHHHHHHHhccChhhhHHHHHHHhhcchHHHHHHHHhhhccccccchhhhhhhhheeecCCcc
Confidence 9999999987665 588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhhhhhccccCccccccc
Q psy1758 821 TLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSEYERISSLIPIDILLS 891 (1527)
Q Consensus 821 ~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~~~~~~~L~pie~~L~ 891 (1527)
+|+|+||+||||||||||||..|||+|||.+|||+++|+|++++|++++++... .....++|+|.+|.
T Consensus 160 ~~~v~cs~GTYIRsL~~dlg~~Lg~~a~l~~LrR~~~G~f~l~~a~~l~~~~~~---~i~~~i~P~e~~L~ 227 (228)
T d1r3ea2 160 SFRVEVSPGTYIRSLCMDIGYKLGCGATAVELVRESVGPHTIEESLNVFEAAPE---EIENRIIPLEKCLE 227 (228)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTSCEEEEEEEEEEETTEEGGGCBCTTTSCHH---HHHHHCEEGGGSST
T ss_pred eeEEEECCHHHHHHHHHHHHHHcCCcEEEeEeEEeeecCcChHHcCCHHHhCHh---HHHhhhcCHHHHhC
Confidence 999999999999999999999999999999999999999999999999887431 22346899998873
|
| >d2apoa2 d.265.1.2 (A:17-246) Pseudouridine synthase II TruB {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase II TruB domain: Pseudouridine synthase II TruB species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=9.8e-56 Score=481.06 Aligned_cols=194 Identities=34% Similarity=0.536 Sum_probs=170.3
Q ss_pred eeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCCC
Q psy1758 662 IHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGD 741 (1527)
Q Consensus 662 ~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~d 741 (1527)
.+|||+||||.|||||+||+++|++|+.+|+||+|||||+||||||||+|+|||+++|++..+|+|.+++.||..|||+|
T Consensus 28 ~~G~l~idKP~G~TS~~vv~~ikk~l~~kKvGH~GTLDP~AtGvL~v~iG~aTKl~~~~~~~~K~Y~~~~~~g~~t~~~d 107 (230)
T d2apoa2 28 KYGVVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTIPMWHIPPKEYVCLMHLHRDASEED 107 (230)
T ss_dssp HTEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGTTSSCEEEEEEEEESSCCCHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCCCCCcccccCccceeeeeeeecHHHHHHHHHhccCceEEEEEEeeccccHhH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeEE
Q psy1758 742 IEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLT 821 (1527)
Q Consensus 742 ~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~~ 821 (1527)
|++++++|.|+++|+||+|||+| +++|.++||++++++++.|.+.
T Consensus 108 ------------------i~~~l~~f~G~i~Q~PP~ySAiK-----------------~~~r~~~i~~l~l~~~~~~~~~ 152 (230)
T d2apoa2 108 ------------------ILRVFKEFTGRIYQRPPLKAAVK-----------------RRLRIRKIHELELLDKDGKDVL 152 (230)
T ss_dssp ------------------HHHHHHHHSEEEECC----------------------------CEEEEEEEEEEEEETTEEE
T ss_pred ------------------HHHHHHhccCcccccCCeeeeec-----------------cccceeeeEEeeeccccCCeEE
Confidence 78899999999999999999987 3468899999999999999999
Q ss_pred EEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccccChhHHHhhhh-------hhhc-cccCcccccc
Q psy1758 822 LRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNIDTIIKYSE-------YERI-SSLIPIDILL 890 (1527)
Q Consensus 822 ~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~~l~~~~~-------~~~~-~~L~pie~~L 890 (1527)
|+|+||+||||||||+|||.+|||+|||+.|||+++|+|++++|++++++.+... ...+ ..|.|+|.+|
T Consensus 153 ~~V~CSkGTYIRSLa~DlG~~Lg~~a~l~~LrRt~~G~f~l~~ai~l~dl~~a~~~~~~~~~~~~L~~~L~Pie~aL 229 (230)
T d2apoa2 153 FRVKCQSGTYIRKLCEDIGEALGTSAHMQELRRTKSGCFEEKDAVYLQDLLDAYVFWKEDGDEEELRRVIKPMEYGL 229 (230)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTSCEEEEEEEEEEETTEEGGGCBCHHHHHHHHHHHHTSCCCHHHHHHEEEGGGGG
T ss_pred EEEEECCCccHHHHHHHHHHHcCCEEEEeECcCCccCCcCHHHccCHHHHHHHHHHHHhhCCHHHHHhhcCCHHHHh
Confidence 9999999999999999999999999999999999999999999999999965321 1122 3478998877
|
| >d2ey4a2 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase II TruB domain: Pseudouridine synthase II TruB species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=7.7e-55 Score=475.74 Aligned_cols=197 Identities=34% Similarity=0.536 Sum_probs=180.4
Q ss_pred ceeeEEEEeCCCCCCHHHHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccccCCCcEEEEEEEECccccCC
Q psy1758 661 IIHGVLLLDKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG 740 (1527)
Q Consensus 661 ~~~G~~~v~Kp~g~ts~~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~~~~~K~Y~~~~~~G~~tdt~ 740 (1527)
+.+|||+||||.|||||+||+++|++|+.+|+||+|||||+||||||||+|+|||+++|++..+|+|.++++||..|+
T Consensus 40 ~~~G~l~idKP~G~TS~~vv~~vkk~l~~kKvGH~GTLDP~AtGvL~i~iG~aTKl~~~~~~~~K~Y~~~~~lg~~~~-- 117 (245)
T d2ey4a2 40 IQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLDPKVSGVLPVALEKATRVVQALLPAGKEYVALMHLHGDVP-- 117 (245)
T ss_dssp HHTEEEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGHHHHTTSCEEEEEEEEESSCCC--
T ss_pred hCCcEEEEeCCCCCCHHHHHHHHHHHhCcCCCCcCccCCCcceeeEEEEecHHHHHHHHhccCCcEEEEEEEecCccc--
Confidence 457999999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred CCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEEEEeCCeE
Q psy1758 741 DIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYL 820 (1527)
Q Consensus 741 d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~~~~~~~~ 820 (1527)
.+++.+++++|.|+++|+||+|||+|++| |.++||++++++|+.|.+
T Consensus 118 ----------------~~~i~~~l~~f~G~i~Q~PP~ySAiK~~~-----------------r~~~I~~~ell~~~~~~~ 164 (245)
T d2ey4a2 118 ----------------EDKIIQVMKEFEGEIIQRPPLRSAVKRRL-----------------RTRKVYYIEVLEIEGRDV 164 (245)
T ss_dssp ----------------HHHHHHHHHTTSEEEEECCCSSSCSCCCC-----------------EEEEEEEEEEEEEETTEE
T ss_pred ----------------HHHHHHHHHhCcceeeecCChHHhccccc-----------------cceEEEEEEEeeeccccc
Confidence 46789999999999999999999998764 778899999999999999
Q ss_pred EEEEEecccccHHHHHHHHHHHhCChhhhHHHhhcccCccccccc-cChhHHHhhhhh-------hhc-cccCccccccc
Q psy1758 821 TLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKC-LNIDTIIKYSEY-------ERI-SSLIPIDILLS 891 (1527)
Q Consensus 821 ~~~v~cs~gtYirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a-~~l~~l~~~~~~-------~~~-~~L~pie~~L~ 891 (1527)
.|+|+||+||||||||+|||.+|||+|||++||||++|+|++++| ++++++.+.... +.+ ..|+|+|.+|.
T Consensus 165 ~~~V~CSkGTYIRSLa~DiG~~Lg~~a~l~~LrRt~~G~F~l~~alvtl~dL~d~~~~~~~~~~~~~l~~~l~P~e~aL~ 244 (245)
T d2ey4a2 165 LFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPFKEDETLITLHDLVDYYYFWKEDGIEEYFRKAIQPMEKAVE 244 (245)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTSSCEEEEEEEEEEETTEESSTTCBCHHHHHHHHHHHHHHCCCHHHHHTSEEGGGGGT
T ss_pred eeeccccCchhhhhHHHHHHHhhCCeEEEeEEEEEEecCccHHhccCCHHHHHHHHHHHHhcCCHHHHHhccCCHHHhcC
Confidence 999999999999999999999999999999999999999999999 699998654211 112 34899999886
Q ss_pred c
Q psy1758 892 S 892 (1527)
Q Consensus 892 ~ 892 (1527)
|
T Consensus 245 H 245 (245)
T d2ey4a2 245 H 245 (245)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6.8e-35 Score=329.70 Aligned_cols=148 Identities=35% Similarity=0.499 Sum_probs=128.2
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccc--eecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCC
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA--RIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGH 995 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~--~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh 995 (1527)
+.+++|||||+||+|||||||+++|++.+|.+.+.+.+++ +++|+.+.|++||+|+.++..++.|+++++||+|||||
T Consensus 2 ~~~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~ 81 (276)
T d2bv3a2 2 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGH 81 (276)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSS
T ss_pred ChhhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCch
Confidence 4678999999999999999999999999999999888764 79999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHH
Q psy1758 996 ADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLF 1065 (1527)
Q Consensus 996 ~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~ 1065 (1527)
.||.+++.++++.+|+||+||||.+|+++||+.+|+.+.++++|+|+||||||+++++++++++++++.|
T Consensus 82 ~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~ad~~~~l~ei~~~l 151 (276)
T d2bv3a2 82 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERL 151 (276)
T ss_dssp SSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTTCCHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEecccccccccchhHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.98 E-value=7e-33 Score=312.76 Aligned_cols=144 Identities=25% Similarity=0.372 Sum_probs=136.6
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccc--eecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA--RIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~--~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
+|||||+||+|||||||+++|++.+|.+.+.+.+++ +++|+.+.|++||+|+.++..++.|+++++||||||||.||.
T Consensus 2 iRNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~ 81 (267)
T d2dy1a2 2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV 81 (267)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH
T ss_pred eeEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhh
Confidence 799999999999999999999999999988887764 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHh
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFD 1066 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~ 1066 (1527)
+++.++++.+|+||+||||.+|+++||+.+|+.+.+.++|.++|+||||+ .+++.+.++++++.|.
T Consensus 82 ~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~-~~~~~~~l~~~~~~lg 147 (267)
T d2dy1a2 82 GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDK-GGDYYALLEDLRSTLG 147 (267)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGG-CCCHHHHHHHHHHHHC
T ss_pred hhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhcccccccccccccc-cccchhhhhhHHHHhc
Confidence 99999999999999999999999999999999999999999999999998 4678888888887764
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.97 E-value=3.2e-33 Score=303.16 Aligned_cols=191 Identities=28% Similarity=0.357 Sum_probs=160.1
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..||||+||+|||||||+++|++..+..........+.+|..+.|++||+|++.+...+.|.++.++++|||||.+|..+
T Consensus 3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~ 82 (196)
T d1d2ea3 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (196)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHH
Confidence 46999999999999999999998654433333344567899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCCCC--ChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNA--RPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~~a--~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
+.++++.+|+|||||||.+|+++||+++|..+..++++. |||+||||+... .++.+.+++++.+..++... -.+|
T Consensus 83 ~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~--~~~p 160 (196)
T d1d2ea3 83 MITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG--EETP 160 (196)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT--TTSC
T ss_pred HHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCc--ccCE
Confidence 999999999999999999999999999999999999865 567999998642 24556667777776655433 3579
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
++++||++|....+......++..||++|.+++|+|
T Consensus 161 ii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP~P 196 (196)
T d1d2ea3 161 IIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196 (196)
T ss_dssp EEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred EEEEEccccccccCcccccCCHHHHHHHHHhhCCCC
Confidence 999999999644444444557889999999999987
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=2.3e-32 Score=298.98 Aligned_cols=190 Identities=30% Similarity=0.402 Sum_probs=157.2
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccc-eecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINA-RIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~-~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
..||||+||+|||||||+++|++.+|.+.+.+.+.. ..+|..+.|++||+|+++....+.|+++++||+|||||.||.+
T Consensus 3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~ 82 (204)
T d2c78a3 3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIK 82 (204)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHH
T ss_pred CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHH
Confidence 469999999999999999999999888877666543 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccE-EEEeccCCCCCC--hhhhHHHHHHHHhhhcccccccCC
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI-VVVNKIDRSNAR--PEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~I-vviNKiD~~~a~--~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
++.++++.||+|||||||.+|+++||+++|..+..+|+|.+ |++||||+.+.. ++++.+++++.+...... ...+
T Consensus 83 ~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~--~~~i 160 (204)
T d2c78a3 83 NMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP--GDEV 160 (204)
T ss_dssp HHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC--TTTS
T ss_pred HHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCC--cccc
Confidence 99999999999999999999999999999999999999865 669999996532 456667777766554432 2357
Q ss_pred cEEEeccccCCcCCC--------cccccCCChhHHHHHHhhcCC
Q psy1758 1078 PVIYTSALHGYANEN--------SKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~--------~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
|++++||+.|..... .......+.+|++++.+++|+
T Consensus 161 ~~i~~sa~~~~~~~~~~~~~~~~~~~~~~~I~eLLdaIde~iP~ 204 (204)
T d2c78a3 161 PVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 204 (204)
T ss_dssp CEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred eeeeeechhhhhhhhcCccccCCcccchhhHHHHHHHHHHhCcC
Confidence 899999987642100 000112456899999999985
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=7.1e-31 Score=293.16 Aligned_cols=193 Identities=29% Similarity=0.324 Sum_probs=155.9
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCccccc---------------ccccceecchhhhhcccceeEeeeeEEEEecCeE
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKN---------------QNINARIMDSNEIEKERGITIFSKNCSIEYNGTR 986 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~---------------~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~ 986 (1527)
..||+++||+|||||||+++||+.+|.+.+. ....+++||..+.|++||+|++++...|.|++++
T Consensus 6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~ 85 (239)
T d1f60a3 6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 85 (239)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEE
Confidence 3699999999999999999999998877532 1122478999999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCC-------CChhHHHHHHHHHHcCCcc-EEEEeccCCCCCCh---h
Q psy1758 987 INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEG-------PMPQTRFVTRKALKLGFKP-IVVVNKIDRSNARP---E 1055 (1527)
Q Consensus 987 iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G-------~~~qt~~~~~~~~~~glp~-IvviNKiD~~~a~~---~ 1055 (1527)
+||+|||||.||.++|.++++.+|+|||||||.+| +++||+++|..+..+|+|. |||+||||+.+++. +
T Consensus 86 i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKmD~~~~d~~~~~ 165 (239)
T d1f60a3 86 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQ 165 (239)
T ss_dssp EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECCCCCCCCHHHHH
Confidence 99999999999999999999999999999999998 4589999999999999986 56799999988764 4
Q ss_pred hhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCc----ccc----------cCCChhHHHHHHhhcCCCCCC
Q psy1758 1056 WVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENS----KAR----------QGNMIPLFEAILKYVPVHKDN 1117 (1527)
Q Consensus 1056 ~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~----~~~----------~~gi~~Ll~~i~~~lp~p~~~ 1117 (1527)
++.+++.+.+...+... ..+|++++||.+|.+..+. .+. ...+..|+++| +.+|+|.++
T Consensus 166 ~~~~el~~~l~~~~~~~--~~i~~ipiSa~~G~ni~~~s~~~~wykg~~~~~~~~~~~~~TLlEaL-D~I~~P~R~ 238 (239)
T d1f60a3 166 EIVKETSNFIKKVGYNP--KTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAI-DAIEQPSRP 238 (239)
T ss_dssp HHHHHHHHHHHHHTCCG--GGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHH-HTSCCCCCC
T ss_pred HHHHHHHHHHHhcCCCC--CcEEEEEEEccCCCcceeccccCccccCcccccccCccccccHHHHh-hCCCCCCCC
Confidence 45555666555554433 2467899999999753321 111 01234689986 678888653
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.2e-29 Score=295.32 Aligned_cols=171 Identities=37% Similarity=0.546 Sum_probs=132.4
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe---------------
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY--------------- 982 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~--------------- 982 (1527)
.++++|||||+||+|||||||+++|+..+|.+.+.+....+++|+.+.|++||+|+.++..++.|
T Consensus 13 ~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~ 92 (341)
T d1n0ua2 13 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD 92 (341)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred CcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccc
Confidence 35789999999999999999999999999999988888888999999999999999999999866
Q ss_pred -cCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHH
Q psy1758 983 -NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDAT 1061 (1527)
Q Consensus 983 -~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~ 1061 (1527)
+++.+||||||||.||.+++.++++.+|+||+||||.+|+++||+++|+.|.+.++|+++|+||||+..+++....+++
T Consensus 93 ~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~~~el~~~~~~~ 172 (341)
T d1n0ua2 93 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDL 172 (341)
T ss_dssp SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHHH
T ss_pred ccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECcccccccHHhhHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999999877766666666
Q ss_pred HHHHhhh-----------ccc------ccccCCcEEEeccccCC
Q psy1758 1062 FDLFDKL-----------CAT------EEQLDFPVIYTSALHGY 1088 (1527)
Q Consensus 1062 ~~~~~~l-----------~~~------~~~~~~pvi~~SA~~g~ 1088 (1527)
+..|... ... ..+..-.|+++||+.||
T Consensus 173 ~~~l~~~i~~vn~~i~~~~~~~~~~~~~~P~~gnV~FaSa~~g~ 216 (341)
T d1n0ua2 173 YQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGW 216 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTE
T ss_pred HHHHcCccccccceeeecccccccccccCcccCceEecccccCe
Confidence 6555321 100 01122459999999998
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.95 E-value=4e-28 Score=267.76 Aligned_cols=171 Identities=27% Similarity=0.306 Sum_probs=135.2
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccc-----------------cccceecchhhhhcccceeEeeeeEEEE
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQ-----------------NINARIMDSNEIEKERGITIFSKNCSIE 981 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~-----------------~~~~~~~D~~~~E~erGiTi~~~~~~~~ 981 (1527)
.+...||+++||+|||||||+++|++.+|.+.+.. ....+.+|..+.|+++|+|+..+...+.
T Consensus 6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 85 (222)
T d1zunb3 6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 85 (222)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence 45678899999999999999999999988775321 1123577888999999999999999999
Q ss_pred ecCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCcc-EEEEeccCCCCCCh---hhh
Q psy1758 982 YNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKP-IVVVNKIDRSNARP---EWV 1057 (1527)
Q Consensus 982 ~~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~-IvviNKiD~~~a~~---~~v 1057 (1527)
+.+++++|+|||||.||..++.++++.+|+|||||||.+|+++||++++..+..+|+|. |+++||||+.+.+. ++.
T Consensus 86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~~~~~~~~~~~ 165 (222)
T d1zunb3 86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESI 165 (222)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHH
T ss_pred ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEccccccccceehhhh
Confidence 99999999999999999999999999999999999999999999999999999999885 67799999987653 333
Q ss_pred HHHHHHHHhhhcccccccCCcEEEeccccCCcCC
Q psy1758 1058 VDATFDLFDKLCATEEQLDFPVIYTSALHGYANE 1091 (1527)
Q Consensus 1058 ~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~ 1091 (1527)
.+++...+...+... .++|++|+||++|.+..
T Consensus 166 ~~~l~~~~~~~~~~~--~~i~~IPiSA~~G~ni~ 197 (222)
T d1zunb3 166 KADYLKFAEGIAFKP--TTMAFVPMSALKGDNVV 197 (222)
T ss_dssp HHHHHHHHHTTTCCC--SEEEEEECCTTTCTTTS
T ss_pred HHHHhhhhHhhccCC--CceEEEEEEcccCccCC
Confidence 344444444433322 34688999999997543
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.95 E-value=2.9e-28 Score=270.61 Aligned_cols=191 Identities=27% Similarity=0.306 Sum_probs=140.3
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccc---------------cceecchhhhhcccceeEeeeeEEEEecCeE
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNI---------------NARIMDSNEIEKERGITIFSKNCSIEYNGTR 986 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~---------------~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~ 986 (1527)
..||+++||+|||||||+++|++.+|.+...... ..+++|..+.|++||+|+......++|+++.
T Consensus 3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~ 82 (224)
T d1jnya3 3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 82 (224)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence 4699999999999999999999998877643221 1358999999999999999999999999999
Q ss_pred EEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCC-------ChhHHHHHHHHHHcCCc-cEEEEeccCCCCCC-----
Q psy1758 987 INIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-------MPQTRFVTRKALKLGFK-PIVVVNKIDRSNAR----- 1053 (1527)
Q Consensus 987 iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~-------~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~----- 1053 (1527)
+||||||||.||..++.++++.+|+|||||||.+|+ ++||++++..+..++++ .|+++||||+..++
T Consensus 83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~~~~~ 162 (224)
T d1jnya3 83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKR 162 (224)
T ss_dssp EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHH
T ss_pred eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCccccHHH
Confidence 999999999999999999999999999999999994 67899999999999987 46679999997543
Q ss_pred hhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCccc--ccCCChhHHHHHHhhcCCCC
Q psy1758 1054 PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA--RQGNMIPLFEAILKYVPVHK 1115 (1527)
Q Consensus 1054 ~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~--~~~gi~~Ll~~i~~~lp~p~ 1115 (1527)
++.+.+++...+...+... ..++++++||.+|.+..+..+ .+. -.++|+.+++.+|.|+
T Consensus 163 ~~~v~~~i~~~~~~~~~~~--~~i~~IPISA~~G~NV~~~s~~~~wy-~~~~L~~~Ld~i~~P~ 223 (224)
T d1jnya3 163 YKEIVDQVSKFMRSYGFNT--NKVRFVPVVAPSGDNITHKSENMKWY-NGPTLEEYLDQLELPP 223 (224)
T ss_dssp HHHHHHHHHHHHHHTTCCC--TTCEEEECBTTTTBTTTBCCSSCTTC-CSCCHHHHHTTCCCCC
T ss_pred HHHHHHHHHhHHHhcCCCc--ccCeEEEEEccCCCCcccccccCCCc-ccccHHHHHhcCCCcC
Confidence 2344444454444444332 356889999999974322111 111 1267788889998875
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.94 E-value=3.4e-28 Score=272.73 Aligned_cols=171 Identities=26% Similarity=0.314 Sum_probs=114.3
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCccccccc---------------ccceecchhhhhcccceeEeeeeEEEEecC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQN---------------INARIMDSNEIEKERGITIFSKNCSIEYNG 984 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~---------------~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 984 (1527)
...+||+|+||+|||||||+++|++.+|.+.+... ...+.+|....|++||+|++.....+.|++
T Consensus 22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~ 101 (245)
T d1r5ba3 22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 101 (245)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence 34569999999999999999999999988764321 113688999999999999999999999999
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCC-------hhHHHHHHHHHHcCCccE-EEEeccCCCCCC---
Q psy1758 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPM-------PQTRFVTRKALKLGFKPI-VVVNKIDRSNAR--- 1053 (1527)
Q Consensus 985 ~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~-------~qt~~~~~~~~~~glp~I-vviNKiD~~~a~--- 1053 (1527)
++++++|||||.+|..++.++++.+|+|+|||||.+|++ +||++++..+..+|+|.| +++||||++.++
T Consensus 102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~~~~~~e 181 (245)
T d1r5ba3 102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 181 (245)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCCCCccchhH
Confidence 999999999999999999999999999999999999964 499999999999999865 779999998765
Q ss_pred --hhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcC
Q psy1758 1054 --PEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYAN 1090 (1527)
Q Consensus 1054 --~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~ 1090 (1527)
++++.+++...+..+.......++|++++||++|++.
T Consensus 182 ~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI 220 (245)
T d1r5ba3 182 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNV 220 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTT
T ss_pred HHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCc
Confidence 3455566665555554433344679999999999843
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.92 E-value=5.6e-26 Score=243.27 Aligned_cols=173 Identities=28% Similarity=0.326 Sum_probs=130.0
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..||||+||+|||||||+|+|++.... ...|....|+++|+|+......+.+.++.++++|||||.+|..+
T Consensus 5 ~inIaiiG~~naGKSTL~n~L~~~~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 75 (179)
T d1wb1a4 5 NINLGIFGHIDHGKTTLSKVLTEIAST---------SAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRA 75 (179)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC-----------------------------CCCEEEETTEEEEECCCSSHHHHHHH
T ss_pred CEEEEEEeCCCCcHHHHHHHHHHhcCc---------eecccccceeeeeeeccccccccccCCccccccccccccccccc
Confidence 359999999999999999999865332 23466778999999999999999999999999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEEE
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIY 1081 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~ 1081 (1527)
+.+++..+|++++|+|+.+|+.+||++++..+...++|+++|+||+|+.+.+..+..+++.+.+.. ........|+++
T Consensus 76 ~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~--~~~~~~~~~iv~ 153 (179)
T d1wb1a4 76 VVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQ--STHNLKNSSIIP 153 (179)
T ss_dssp HHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHH--HSSSGGGCCEEE
T ss_pred hhhhhhhccccccccccccccchhhhhhhhhhhhcCCcceeccccccccCHHHHHHHHHHHHHHHH--HhhcCCCCeEEE
Confidence 999999999999999999999999999999999999999999999999875433323333222211 111223468999
Q ss_pred eccccCCcCCCcccccCCChhHHHHHHhhcCCCC
Q psy1758 1082 TSALHGYANENSKARQGNMIPLFEAILKYVPVHK 1115 (1527)
Q Consensus 1082 ~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 1115 (1527)
+||++|+ |+++|++.|.+.+|.+.
T Consensus 154 iSA~~g~----------gi~eL~~~I~~~l~~~e 177 (179)
T d1wb1a4 154 ISAKTGF----------GVDELKNLIITTLNNAE 177 (179)
T ss_dssp CCTTTCT----------THHHHHHHHHHHHHHSC
T ss_pred EEccCCc----------CHHHHHHHHHhcCCccc
Confidence 9999999 99999999999998764
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.92 E-value=3.9e-26 Score=249.97 Aligned_cols=181 Identities=24% Similarity=0.237 Sum_probs=125.5
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCccccccc----------ccceecchhhhhcccceeEeeeeE-----EEEecC
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQN----------INARIMDSNEIEKERGITIFSKNC-----SIEYNG 984 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~----------~~~~~~D~~~~E~erGiTi~~~~~-----~~~~~~ 984 (1527)
+...||||+||+|||||||+++|++..+....... .+..+......+.+++.+...... .....+
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 85 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence 34469999999999999999999975433221111 111111112222222222211111 112234
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHHcCCc-cEEEEeccCCCCCCh-hhhHHHH
Q psy1758 985 TRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKLGFK-PIVVVNKIDRSNARP-EWVVDAT 1061 (1527)
Q Consensus 985 ~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~~glp-~IvviNKiD~~~a~~-~~v~~~~ 1061 (1527)
++++++|||||.||..++.+++..+|++|+||||.+|+ +.||++++..+..+|++ +||++||||+.+.+. ....+++
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~~~~~~~~~~ 165 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQI 165 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCccchHHHHHHHHH
Confidence 68999999999999999999999999999999999996 88999999999999985 466799999976432 2222222
Q ss_pred HHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1062 FDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1062 ~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.+.+. .....++|++++||++|. |++.|++.|.+++|.|
T Consensus 166 ~~~l~----~~~~~~~p~ipiSA~~g~----------nI~~L~e~i~~~ip~P 204 (205)
T d2qn6a3 166 KQFTK----GTWAENVPIIPVSALHKI----------NIDSLIEGIEEYIKTP 204 (205)
T ss_dssp HHHHT----TSTTTTCCEEECBTTTTB----------SHHHHHHHHHHHSCCC
T ss_pred HHHhc----cccCCCCeEEEEeCCCCC----------ChHHHHHHHHhhCCCC
Confidence 22222 222345799999999998 9999999999999987
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.91 E-value=5e-25 Score=239.18 Aligned_cols=166 Identities=31% Similarity=0.359 Sum_probs=127.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe------------------
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY------------------ 982 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~------------------ 982 (1527)
...||||+||+|||||||+++|++... |....|.++|+|.......+.+
T Consensus 4 ~~inIaiiGhvd~GKSTL~~~L~g~~~-------------~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (195)
T d1kk1a3 4 AEVNIGMVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYC 70 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCC-------------C--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTT
T ss_pred CcEEEEEEeccCCcHHHHHHHHHhhhh-------------hhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeee
Confidence 456999999999999999999986422 3334455556665544333322
Q ss_pred -----cCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHHcCCcc-EEEEeccCCCCCC-h
Q psy1758 983 -----NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKLGFKP-IVVVNKIDRSNAR-P 1054 (1527)
Q Consensus 983 -----~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~~glp~-IvviNKiD~~~a~-~ 1054 (1527)
.+++++++|||||.+|..++.++++.+|++++|||+.+|. ++||++++..+..+++|. |+++||+|+.+.. .
T Consensus 71 ~~~~~~~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~ 150 (195)
T d1kk1a3 71 GHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKA 150 (195)
T ss_dssp CCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHH
T ss_pred eeeecCceeEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHHH
Confidence 3467999999999999999999999999999999999996 678999999999999886 5679999997643 1
Q ss_pred hhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1055 EWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1055 ~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
.+..+++.+.+... ...++|++++||++|. |++.|+++|.+++|.
T Consensus 151 ~~~~~~~~~~~~~~----~~~~~~iIpiSA~~G~----------ni~~Ll~~I~~~iPt 195 (195)
T d1kk1a3 151 LENYRQIKEFIEGT----VAENAPIIPISALHGA----------NIDVLVKAIEDFIPT 195 (195)
T ss_dssp HHHHHHHHHHHTTS----TTTTCCEEECBTTTTB----------SHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhccc----cCCCCeEEEEECCCCC----------CHHHHHHHHHHHCcC
Confidence 23334444433322 2235789999999998 999999999999984
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.91 E-value=6.3e-26 Score=252.26 Aligned_cols=181 Identities=27% Similarity=0.270 Sum_probs=130.6
Q ss_pred eeeE--EEEEeecCCCCCcHHhHHhhccCcccccccccce-ecchhhhhcccceeEe-eeeEEEEecCeEEEEEeCCCCC
Q psy1758 921 ILIK--SAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINAR-IMDSNEIEKERGITIF-SKNCSIEYNGTRINIIDTPGHA 996 (1527)
Q Consensus 921 ~irn--IaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~-~~D~~~~E~erGiTi~-~~~~~~~~~~~~iniiDTPGh~ 996 (1527)
++|| |||+||+|||||||+++|++.++.+.+.+.+... ..+..+.|+.+++|.. .....+.+++.+++++|||||.
T Consensus 2 ~~r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~ 81 (227)
T d1g7sa4 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (227)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCCCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeeccccccccccccccee
Confidence 5678 9999999999999999999987766655544321 1122233444444322 2334567888999999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhH---------------HHH
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVV---------------DAT 1061 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~---------------~~~ 1061 (1527)
+|..++.+++..||++|+||||.+|+++||+.+|..+.+.++|+|+|+||+|+.+++..... ...
T Consensus 82 ~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 161 (227)
T d1g7sa4 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL 161 (227)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHH
T ss_pred cccccchhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999765422111 111
Q ss_pred HHHH----hhhcc-----------cccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1062 FDLF----DKLCA-----------TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1062 ~~~~----~~l~~-----------~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...+ ..+.. ....-..|++++||++|. |++.|++.|....
T Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~----------gid~Ll~~l~~l~ 216 (227)
T d1g7sa4 162 DTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGE----------GIPELLTMLMGLA 216 (227)
T ss_dssp HHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCC----------CHHHHHHHHHHHH
Confidence 1111 00000 000112589999999998 9999999887643
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.89 E-value=4.1e-23 Score=223.12 Aligned_cols=159 Identities=33% Similarity=0.408 Sum_probs=127.6
Q ss_pred CEEEEEecCCCChhHHHHHHHcc----------------ccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHH
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKT----------------NVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMR 133 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~----------------~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~ 133 (1527)
.+|+++||+|||||||+++|++. ........|+|++.....+.+.++.++|+|||||++|..++
T Consensus 4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~~ 83 (196)
T d1d2ea3 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNM 83 (196)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHH
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHHH
Confidence 57999999999999999999752 12334556999999999999999999999999999999999
Q ss_pred HhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCC-CEEEEEEcccCCcch--hHHHHHHHhhhcccccccCCCCcEEE
Q psy1758 134 ARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGV-PLIVAINKIDKLDIN--LDRIKQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 134 ~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~v-piIvviNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
.++++.+|+++||+|+.+|+++||++++..+...++ |+|||+||+|+...+ .+.+..++.............+|+++
T Consensus 84 ~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~pii~ 163 (196)
T d1d2ea3 84 ITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIV 163 (196)
T ss_dssp HHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEE
T ss_pred HHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcccCEEEE
Confidence 999999999999999999999999999999999887 589999999997522 12222222222111111123579999
Q ss_pred eeccCC----------CChhHHHHHHHH
Q psy1758 211 ISAKTG----------VGINKLLENISL 228 (1527)
Q Consensus 211 iSAktg----------~gI~eL~~~l~~ 228 (1527)
+||++| .|+.+|+++|..
T Consensus 164 iSa~~g~~~~~~~~~~~~~~~Lldai~~ 191 (196)
T d1d2ea3 164 GSALCALEQRDPELGLKSVQKLLDAVDT 191 (196)
T ss_dssp CCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred EEccccccccCcccccCCHHHHHHHHHh
Confidence 999998 588888888753
|
| >d1g7sa3 c.20.1.1 (A:329-459) Initiation factor IF2/eIF5b, domain 3 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Initiation factor IF2/eIF5b, domain 3 superfamily: Initiation factor IF2/eIF5b, domain 3 family: Initiation factor IF2/eIF5b, domain 3 domain: Initiation factor IF2/eIF5b, domain 3 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.88 E-value=3.2e-24 Score=212.42 Aligned_cols=103 Identities=21% Similarity=0.345 Sum_probs=96.6
Q ss_pred ceeEeEEEEeccCCcHHHHHHHHHhcCCCceeeeEEeeccCcCChhhHHHHHhc------CCEEEEeCCCCChhHHHHHH
Q psy1758 364 VKNLLIIIKTDVYGSREVLTESLKNLSTDKVKIQVIHNAVGNINESDINLAIAS------KAIIIGFNVRADASTRKLAQ 437 (1527)
Q Consensus 364 ~~~~~~iiKad~~Gs~eAi~~~l~~~~~~~v~i~iv~~~vG~it~~Dv~~A~~~------~a~Ii~Fnv~~~~~~~~~a~ 437 (1527)
.+.+++|||||++||+|||.++|.++ +++|++++||+||++||.+|+++ +|+|+||||++++++++.|+
T Consensus 20 ~~~~~viiKaDt~GSlEAi~~~L~~~-----~i~i~~~~VG~it~~DV~~A~~~~~~~~~~a~IlgFnV~~~~~a~~~a~ 94 (131)
T d1g7sa3 20 TDEAGVVVKADTLGSLEAVVKILRDM-----YVPIKVADIGDVSRRDVVNAGIALQEDRVYGAIIAFNVKVIPSAAQELK 94 (131)
T ss_dssp CSSSCCEEEESSHHHHHHHHHHHHHT-----TCCCSEEEESSBCHHHHHHHHHHHTTCTTSCEEEEESCCBCHHHHHHTS
T ss_pred ccccCEEEEcCCcchHHHHHHHHHhc-----CceeEEeeEeccchhhHHHHHHhhccCccCcEEEEEecccCchhHHHHH
Confidence 35689999999999999999999876 78999999999999999999997 69999999999999999999
Q ss_pred hCCCeEEEeehHHHHHHHHHHHHhccCCcceeee
Q psy1758 438 INNINIRYHNIIYNIIKEIKSEITNLIPLEKKEN 471 (1527)
Q Consensus 438 ~~~V~i~~~~iIY~l~~~~~~~~~~~l~~~~~e~ 471 (1527)
+.||+|++|+|||+|+|+++++|++++++.+++.
T Consensus 95 ~~~V~i~~~~IIY~Lid~~~~~~~~~~~~~~~e~ 128 (131)
T d1g7sa3 95 NSDIKLFQGNVIYRLMEEYEEWVRGIEEEKKKKW 128 (131)
T ss_dssp SSSSEEEEESCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcEEEeCchhhHHHHHHHHHHhccChHHHHh
Confidence 9999999999999999999999999998777653
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.88 E-value=1.1e-22 Score=217.50 Aligned_cols=163 Identities=29% Similarity=0.384 Sum_probs=124.9
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhcccc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVT 140 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~a 140 (1527)
+..+|+++||+|||||||+|+|++... ......|+|.+.....+.+.+..++++|||||.+|...+.+++..+
T Consensus 4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~ 83 (179)
T d1wb1a4 4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII 83 (179)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhc
Confidence 456899999999999999999986432 1223346777777778888999999999999999999999999999
Q ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 141 D~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|++++|+|++++..+|+.+++..+...++|+++|+||+|+.+.+..+...................|+|++||++|+|++
T Consensus 84 d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~ 163 (179)
T d1wb1a4 84 DLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVD 163 (179)
T ss_dssp CEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHH
T ss_pred cccccccccccccchhhhhhhhhhhhcCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHH
Confidence 99999999999999999999999999999999999999998765433322222221111111234689999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
+|++.|....
T Consensus 164 eL~~~I~~~l 173 (179)
T d1wb1a4 164 ELKNLIITTL 173 (179)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 9999997554
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.87 E-value=7e-23 Score=227.41 Aligned_cols=165 Identities=43% Similarity=0.677 Sum_probs=126.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEE------------------EeCCeEEEEEeCCChhh
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNV------------------VTNHGSITFLDTPGHEA 128 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~------------------~~~~~~i~~iDTPG~e~ 128 (1527)
.|+|+|+|+||+|||||||+++|++........+++|.+...... .+++.+++|+|||||++
T Consensus 3 ~r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~ 82 (227)
T d1g7sa4 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (227)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceec
Confidence 478999999999999999999998876655555555554444333 24556899999999999
Q ss_pred HHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhH---------------H----H-
Q psy1758 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD---------------R----I- 188 (1527)
Q Consensus 129 f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~---------------~----~- 188 (1527)
|...+.+++..+|++|+|+||.+|+.+++.+++..+...++|+|+|+||+|+...+.. . .
T Consensus 83 f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 162 (227)
T d1g7sa4 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD 162 (227)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred ccccchhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998753310 0 0
Q ss_pred ------HHHHhhhcc------cccccCCCCcEEEeeccCCCChhHHHHHHHHHHH
Q psy1758 189 ------KQDLISEQV------IPEEYGGASPFISISAKTGVGINKLLENISLQAE 231 (1527)
Q Consensus 189 ------~~~l~~~~~------~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~ 231 (1527)
...+.+... ....+...++++++||++|.|+++|++.|...++
T Consensus 163 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~ 217 (227)
T d1g7sa4 163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (227)
T ss_dssp HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 011111111 1122344578999999999999999999986553
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.86 E-value=6.3e-22 Score=215.55 Aligned_cols=147 Identities=35% Similarity=0.427 Sum_probs=116.9
Q ss_pred CEEEEEecCCCChhHHHHHHHcccc-----------------ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHH
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNV-----------------VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAM 132 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~-----------------~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~ 132 (1527)
.+|+++||+|||||||+++|..... ......|+|++.....+.+++.+++|+|||||++|...
T Consensus 4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~~ 83 (204)
T d2c78a3 4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKN 83 (204)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHH
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHHH
Confidence 6899999999999999999963211 11222389999999999999999999999999999999
Q ss_pred HHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcch--hHHHHHHHhhhcccccccCCCCcEE
Q psy1758 133 RARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDIN--LDRIKQDLISEQVIPEEYGGASPFI 209 (1527)
Q Consensus 133 ~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~--~~~~~~~l~~~~~~~~~~~~~~~v~ 209 (1527)
+.++++.+|++|||+||.+|+++||.++|..+...++| +||++||+|+.+.. .+++..++..............+++
T Consensus 84 ~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~i 163 (204)
T d2c78a3 84 MITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVI 163 (204)
T ss_dssp HHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEE
T ss_pred HHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCcccceee
Confidence 99999999999999999999999999999999999997 78889999997632 2333333322211111123457899
Q ss_pred EeeccCC
Q psy1758 210 SISAKTG 216 (1527)
Q Consensus 210 ~iSAktg 216 (1527)
++||..+
T Consensus 164 ~~sa~~~ 170 (204)
T d2c78a3 164 RGSALLA 170 (204)
T ss_dssp ECCHHHH
T ss_pred eeechhh
Confidence 9998744
|
| >d1josa_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Alpha-lytic protease prodomain-like superfamily: Ribosome-binding factor A, RbfA family: Ribosome-binding factor A, RbfA domain: Ribosome-binding factor A, RbfA species: Haemophilus influenzae [TaxId: 727]
Probab=99.86 E-value=1.3e-22 Score=193.91 Aligned_cols=97 Identities=33% Similarity=0.630 Sum_probs=90.7
Q ss_pred ccchhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecCCh--hhHHHHHHHHHHhhHHHHHHHhccc
Q psy1758 541 RLSRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKD--ISIKNILDNLSKAKNYIRFKLSKKL 618 (1527)
Q Consensus 541 r~~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~~~--~~~~~~~~~l~~~~g~ir~~l~~~l 618 (1527)
|..|..+.++++|++++.++++||++++||||+|++|+||++|+||||++++. ...++++++|++++|+||++||+++
T Consensus 1 R~~rv~~~i~~~is~il~~~i~d~~l~~vtIt~V~~S~Dl~~A~Vy~s~~~~~~~~~~~~~~~~L~~~~~~ir~~la~~l 80 (100)
T d1josa_ 1 RSDRVAQEIQKEIAVILQREVKDPRIGMVTVSDVEVSSDLSYAKIFVTFLFDHDEMAIEQGMKGLEKASPYIRSLLGKAM 80 (100)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCTTTCCEEEEEEEECTTSCEEEEEEEESCCSCHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhccCcccCceEEEEEEEcCCcceEEEEEEecCcchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45688999999999999999999999999999999999999999999999853 3457899999999999999999999
Q ss_pred ccccCCeEEEEeccchhhH
Q psy1758 619 HIHTLPILNFFYDNSIENA 637 (1527)
Q Consensus 619 ~lr~~P~l~F~~D~s~~~~ 637 (1527)
+||++|+|+|++|+|+|+|
T Consensus 81 ~~r~~P~L~F~~D~s~e~g 99 (100)
T d1josa_ 81 RLRIVPEIRFIYDQSLVEG 99 (100)
T ss_dssp CCSSCCEEEEEECCCCCCC
T ss_pred CCccCCeEEEEecCchhcc
Confidence 9999999999999999986
|
| >d1pa4a_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Alpha-lytic protease prodomain-like superfamily: Ribosome-binding factor A, RbfA family: Ribosome-binding factor A, RbfA domain: Ribosome-binding factor A, RbfA species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=99.85 E-value=2.7e-23 Score=196.12 Aligned_cols=94 Identities=24% Similarity=0.421 Sum_probs=88.9
Q ss_pred chhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecCChhhHHHHHHHHHHhhHHHHHHHhccccccc
Q psy1758 543 SRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLSKKLHIHT 622 (1527)
Q Consensus 543 ~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~~~~~~~~~~~~l~~~~g~ir~~l~~~l~lr~ 622 (1527)
.|.+++|++.|++++.++++||++++||||+|++|+||++|+||||+++++ +.++++++|++++|+||++||++++||+
T Consensus 2 eR~~~~i~r~is~~l~~ei~d~~l~~vtIt~V~vS~Dl~~AkVy~s~~~~~-~~~~~~~~L~~~~g~ir~~l~~~l~lr~ 80 (96)
T d1pa4a_ 2 ERLENDIIRLINRTVIHEIYNETVKTGHVTHVKLSDDLLHVTVYLDCYNRE-QIDRVVGAFNQAKGVFSRVLAHNLYLAK 80 (96)
T ss_dssp CHHHHHHHHHHHHHHTTCSSSSCHHHHCCSCCEEETTTTEEEECCCCSSSS-SHHHHHHHHHHTHHHHHHHHHTTCCCGG
T ss_pred hHHHHHHHHHHHHHHHHhCCCcccCceEEEEEEECCCCcEEEEEEEeCCcc-chHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 467899999999999999999999999999999999999999999999765 4478999999999999999999999999
Q ss_pred CCeEEEEeccchhhH
Q psy1758 623 LPILNFFYDNSIENA 637 (1527)
Q Consensus 623 ~P~l~F~~D~s~~~~ 637 (1527)
+|+|+|++|+|+|+|
T Consensus 81 ~P~L~F~~D~s~e~~ 95 (96)
T d1pa4a_ 81 AVQIHFVKDKAIDNA 95 (96)
T ss_dssp GCCCEECSSSTTSSC
T ss_pred CCeEEEEeCCchhcc
Confidence 999999999999986
|
| >d1kkga_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Alpha-lytic protease prodomain-like superfamily: Ribosome-binding factor A, RbfA family: Ribosome-binding factor A, RbfA domain: Ribosome-binding factor A, RbfA species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.5e-22 Score=195.77 Aligned_cols=103 Identities=31% Similarity=0.570 Sum_probs=94.1
Q ss_pred ccccccchhhhhhhhhhHHhhhhhccCcceee-eEEEEEEEeCCcceEEEEEEecCChhh--HHHHHHHHHHhhHHHHHH
Q psy1758 537 FECERLSRIENQIQRDISEIIAFDIQNPIINI-ITITEVKITLDYSYAKIFFTTFNKDIS--IKNILDNLSKAKNYIRFK 613 (1527)
Q Consensus 537 ~ecgr~~r~~~~i~~~Iseii~~ei~d~~~~~-vtvt~V~~s~Dl~~a~vy~s~~~~~~~--~~~~~~~l~~~~g~ir~~ 613 (1527)
.|..|..|+++.+++.|++++.++++||+++. +|||+|++|+||++|+||||+++++++ .++++++|++++|+||+.
T Consensus 3 ~~~~R~~rv~~~i~r~is~il~~~~~dp~l~~~vtIt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~~~L~~~~~~ir~~ 82 (108)
T d1kkga_ 3 KEFGRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMSRDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIRSL 82 (108)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTTSSSSSGGGTSCCBCSCEEEETTTTEEEEEEBCSGGGCHHHHHHHHHHHHHTHHHHHHH
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHhccCcccCCeeEEeEEEEcCCcceEEEEEEecCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 35668899999999999999999999999974 699999999999999999999986543 467899999999999999
Q ss_pred HhcccccccCCeEEEEeccchhhHHH
Q psy1758 614 LSKKLHIHTLPILNFFYDNSIENAMM 639 (1527)
Q Consensus 614 l~~~l~lr~~P~l~F~~D~s~~~~~~ 639 (1527)
||++|+||++|+|+|++|+|+|++.|
T Consensus 83 l~~~l~lr~~P~L~F~~D~s~e~a~R 108 (108)
T d1kkga_ 83 LGKAMRLRIVPELTFFYDNSLVEGMR 108 (108)
T ss_dssp HHHHTTCSCCCEEEEEECCTTSSSCC
T ss_pred HHhhCCCeECCEEEEEecCchhhhcC
Confidence 99999999999999999999999764
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.84 E-value=7.5e-21 Score=205.92 Aligned_cols=158 Identities=34% Similarity=0.446 Sum_probs=119.0
Q ss_pred CEEEEEecCCCChhHHHHHHHcccc---ccccCCceeEEEEEEEEEe-----------------------CCeEEEEEeC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNV---VFSEAGGITQHIGAYNVVT-----------------------NHGSITFLDT 123 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~---~~~~~~giT~~~~~~~~~~-----------------------~~~~i~~iDT 123 (1527)
.+|+++||+|||||||+++|++... ......|+|++.......+ ....++|+||
T Consensus 6 inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDt 85 (195)
T d1kk1a3 6 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 85 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred EEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeecc
Confidence 4689999999999999999987432 3333456666554433222 1235899999
Q ss_pred CChhhHHHHHHhhccccCEEEEEEeCCCCC-cHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHHHHHHHhhhcccccc
Q psy1758 124 PGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISEQVIPEE 201 (1527)
Q Consensus 124 PG~e~f~~~~~~~~~~aD~~IlVvda~~g~-~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~~~~~l~~~~~~~~~ 201 (1527)
|||++|...+.++++.+|++++|+|+.+|. .++|.+++..+...++| +|+|+||+|+.+............. .....
T Consensus 86 PGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~~~~~~~~~~-~~~~~ 164 (195)
T d1kk1a3 86 PGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKE-FIEGT 164 (195)
T ss_dssp SSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHH-HHTTS
T ss_pred chhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHHHHHHHHHHHH-Hhccc
Confidence 999999999999999999999999999996 67899999999998887 7889999999874322221111111 11122
Q ss_pred cCCCCcEEEeeccCCCChhHHHHHHHH
Q psy1758 202 YGGASPFISISAKTGVGINKLLENISL 228 (1527)
Q Consensus 202 ~~~~~~v~~iSAktg~gI~eL~~~l~~ 228 (1527)
....+|++++||++|+||++|++.|..
T Consensus 165 ~~~~~~iIpiSA~~G~ni~~Ll~~I~~ 191 (195)
T d1kk1a3 165 VAENAPIIPISALHGANIDVLVKAIED 191 (195)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 234579999999999999999999864
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.84 E-value=3.8e-21 Score=211.49 Aligned_cols=153 Identities=27% Similarity=0.336 Sum_probs=119.3
Q ss_pred CEEEEEecCCCChhHHHHHHHcccc---------------------------------ccccCCceeEEEEEEEEEeCCe
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNV---------------------------------VFSEAGGITQHIGAYNVVTNHG 116 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~---------------------------------~~~~~~giT~~~~~~~~~~~~~ 116 (1527)
++|+++||+|||||||+++|..... ......++|++.....+.+.++
T Consensus 10 ~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 89 (222)
T d1zunb3 10 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKR 89 (222)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSE
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEeccce
Confidence 5699999999999999999953211 0112247788888888889999
Q ss_pred EEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHHHHHHHhhh
Q psy1758 117 SITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQDLISE 195 (1527)
Q Consensus 117 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~~~~~l~~~ 195 (1527)
.++|+|||||++|...+.++++.+|++|+|+||.+|+.+||.+++..+...++| +|+++||+|+.+.+.........+.
T Consensus 90 ~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~~~~~~~~~~~~~~l 169 (222)
T d1zunb3 90 KFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADY 169 (222)
T ss_dssp EEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHH
T ss_pred EEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEccccccccceehhhhHHHH
Confidence 999999999999999999999999999999999999999999999999999988 8999999999876554433322111
Q ss_pred ccccccc---CCCCcEEEeeccCCCChhHH
Q psy1758 196 QVIPEEY---GGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 196 ~~~~~~~---~~~~~v~~iSAktg~gI~eL 222 (1527)
....... ...++++|+||++|.||.+.
T Consensus 170 ~~~~~~~~~~~~~i~~IPiSA~~G~ni~~~ 199 (222)
T d1zunb3 170 LKFAEGIAFKPTTMAFVPMSALKGDNVVNK 199 (222)
T ss_dssp HHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred hhhhHhhccCCCceEEEEEEcccCccCCcC
Confidence 1111111 23468999999999999653
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.84 E-value=7.3e-21 Score=207.67 Aligned_cols=159 Identities=33% Similarity=0.441 Sum_probs=114.4
Q ss_pred CEEEEEecCCCChhHHHHHHHcccccc---ccCCceeEEEEEEEEE----------------------------eCCeEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVF---SEAGGITQHIGAYNVV----------------------------TNHGSI 118 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~---~~~~giT~~~~~~~~~----------------------------~~~~~i 118 (1527)
.+|+++||+|||||||+++|++..... ......+.+.+..... ...+.+
T Consensus 9 ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 88 (205)
T d2qn6a3 9 VNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRI 88 (205)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEE
T ss_pred eEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEEE
Confidence 589999999999999999998633210 0111111111111100 012368
Q ss_pred EEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCC-cHHHHHHHHHHHHcCC-CEEEEEEcccCCcchhHHHHHHHhhhc
Q psy1758 119 TFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-MPQTREAIAHAKISGV-PLIVAINKIDKLDINLDRIKQDLISEQ 196 (1527)
Q Consensus 119 ~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-~~qt~e~i~~~~~~~v-piIvviNKiDl~~~~~~~~~~~l~~~~ 196 (1527)
+|+|||||++|...+.+++..+|++|+|+|+.+|+ ..||++++..+...++ |+||++||+|+.+.+.......... .
T Consensus 89 ~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~~~~~~~~~~~-~ 167 (205)
T d2qn6a3 89 SFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIK-Q 167 (205)
T ss_dssp EEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCHHHHHHHHHHHH-H
T ss_pred EEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCccchHHHHHHHHHH-H
Confidence 99999999999999999999999999999999997 8899999999999997 6899999999987543322221111 1
Q ss_pred ccccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 197 VIPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 197 ~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
.....+...+|++++||++|.||++|++.|.+.
T Consensus 168 ~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ 200 (205)
T d2qn6a3 168 FTKGTWAENVPIIPVSALHKINIDSLIEGIEEY 200 (205)
T ss_dssp HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HhccccCCCCeEEEEeCCCCCChHHHHHHHHhh
Confidence 112233456799999999999999999998643
|
| >d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.84 E-value=2.3e-22 Score=188.16 Aligned_cols=91 Identities=45% Similarity=0.803 Sum_probs=85.0
Q ss_pred eeeeeeEeEEEeEEEEcCCCCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccccchhhh
Q psy1758 468 KKENLLGLAEIRQVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLSRIEN 547 (1527)
Q Consensus 468 ~~e~~~g~a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~r~~~ 547 (1527)
|+|+++|+|+|+++|+++|.++||||+|++|++++++.+||+|++++||+|+|.||||+|++|+||++|+|||+.+..++
T Consensus 1 yeE~~~G~A~V~~vF~~~k~~~iAGc~V~~G~i~~~~~vrv~R~~~~I~~G~i~sLk~~K~~V~eV~~G~ECGi~l~~~~ 80 (99)
T d1d1na_ 1 YEEKVIGQAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKNFN 80 (99)
T ss_dssp CCCCEEEEEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTTCS
T ss_pred CccEEEEEEEEEEEEEcCCCcEEEEEEEEeCeEccCCceEEecCCEEEEEeEEeeecccccccCEecCCeEEEEEecCcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHhhhh
Q psy1758 548 QIQRDISEIIAF 559 (1527)
Q Consensus 548 ~i~~~Iseii~~ 559 (1527)
+|+.. +.+..+
T Consensus 81 d~~~G-D~ie~y 91 (99)
T d1d1na_ 81 DIKEG-DVIEAY 91 (99)
T ss_dssp SCSSC-SEEEEE
T ss_pred CCCCC-CEEEEE
Confidence 99874 444444
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=3.1e-21 Score=214.64 Aligned_cols=153 Identities=29% Similarity=0.384 Sum_probs=122.5
Q ss_pred CEEEEEecCCCChhHHHHHHHcccc-------------------------------ccccCCceeEEEEEEEEEeCCeEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNV-------------------------------VFSEAGGITQHIGAYNVVTNHGSI 118 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~-------------------------------~~~~~~giT~~~~~~~~~~~~~~i 118 (1527)
.+|+++||+|||||||+.+|..... ......|+|++.....+.+.++++
T Consensus 7 iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i 86 (239)
T d1f60a3 7 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV 86 (239)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEEE
Confidence 5899999999999999999853110 112346999999999999999999
Q ss_pred EEEeCCChhhHHHHHHhhccccCEEEEEEeCCCC-------CcHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHHHHH
Q psy1758 119 TFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDG-------VMPQTREAIAHAKISGVP-LIVAINKIDKLDINLDRIKQ 190 (1527)
Q Consensus 119 ~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g-------~~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~~~~ 190 (1527)
+|+|||||++|..++.++++.+|++|||+||.+| +.+||.+++..+...++| +|+++||+|+.+++..++..
T Consensus 87 ~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKmD~~~~d~~~~~~ 166 (239)
T d1f60a3 87 TVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQE 166 (239)
T ss_dssp EEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHH
T ss_pred EEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECCCCCCCCHHHHHH
Confidence 9999999999999999999999999999999987 457999999999999998 78899999998876654433
Q ss_pred HHhhhcccccccC---CCCcEEEeeccCCCChhHH
Q psy1758 191 DLISEQVIPEEYG---GASPFISISAKTGVGINKL 222 (1527)
Q Consensus 191 ~l~~~~~~~~~~~---~~~~v~~iSAktg~gI~eL 222 (1527)
...+.......++ ..++++++||.+|.|+.+.
T Consensus 167 ~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~~ 201 (239)
T d1f60a3 167 IVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 201 (239)
T ss_dssp HHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHHHHHHHHHhcCCCCCcEEEEEEEccCCCcceec
Confidence 2221111111111 2468999999999997653
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.82 E-value=1.3e-20 Score=212.07 Aligned_cols=124 Identities=27% Similarity=0.335 Sum_probs=107.5
Q ss_pred CEEEEEecCCCChhHHHHHHHccccc------------------cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVV------------------FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA 131 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~------------------~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~ 131 (1527)
.+|+++||.|+|||||+.+|...... .....++|+......+.|++.+++|+|||||.+|..
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~ 86 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTI 86 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCST
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHH
Confidence 37999999999999999998542211 122347888888899999999999999999999999
Q ss_pred HHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHh
Q psy1758 132 MRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLI 193 (1527)
Q Consensus 132 ~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~ 193 (1527)
.+.++++.+|++|+|+|+.+|+..||...|+.+...++|.|+++||+|+..++..+...++.
T Consensus 87 e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~ad~~~~l~ei~ 148 (276)
T d2bv3a2 87 EVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQ 148 (276)
T ss_dssp THHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEecccccccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999877666655443
|
| >d2e7ga1 d.52.7.1 (A:86-201) Ribosome-binding factor A, RbfA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Alpha-lytic protease prodomain-like superfamily: Ribosome-binding factor A, RbfA family: Ribosome-binding factor A, RbfA domain: Ribosome-binding factor A, RbfA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=8.7e-22 Score=193.26 Aligned_cols=111 Identities=13% Similarity=0.238 Sum_probs=100.2
Q ss_pred ccccccchhhhhhhhhhHHhhhhhccCcce-e-eeEEEEEEEeCCcceEEEEEEecCChhhHHHHHHHHHHhhHHHHHHH
Q psy1758 537 FECERLSRIENQIQRDISEIIAFDIQNPII-N-IITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKL 614 (1527)
Q Consensus 537 ~ecgr~~r~~~~i~~~Iseii~~ei~d~~~-~-~vtvt~V~~s~Dl~~a~vy~s~~~~~~~~~~~~~~l~~~~g~ir~~l 614 (1527)
.+..|..+..+.++++|+++++.+..++.+ + .||||+|+||+||++|+||||++|++...+.++++|++++|+||+.|
T Consensus 3 ~~s~R~~kv~~li~k~is~il~~~~~~~~l~~~~ItIt~V~vS~Dl~~AkVy~s~~~~~~~~~~~~~~L~~~~~~ir~~l 82 (116)
T d2e7ga1 3 EDHARLRALNGLLYKALTDLLCTPEVSQELYDLNVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVLQRSAAHMRHLL 82 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTTCHHHHHHTCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCcCccccCceEEEEEEEEcCCCcEEEEEEEeCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999999999876555444 3 69999999999999999999999988777888899999999999999
Q ss_pred hcccccccCCeEEEEeccchhhHHHHHHHHhhc
Q psy1758 615 SKKLHIHTLPILNFFYDNSIENAMMISKLIDGI 647 (1527)
Q Consensus 615 ~~~l~lr~~P~l~F~~D~s~~~~~~i~~ll~~i 647 (1527)
++++.||++|+|+|++|++++++.+|++||+++
T Consensus 83 ~~~l~lr~~P~L~F~~D~s~~~~~~i~~ll~~~ 115 (116)
T d2e7ga1 83 MSQQTLRNVPPIVFVQDKGNAALAELDQLLAVA 115 (116)
T ss_dssp HTCTTCSCCCCEEEEETTCCCCCCCCCCCSCCC
T ss_pred HHHhCccccceEEEEeCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999876
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.81 E-value=1.1e-19 Score=204.35 Aligned_cols=111 Identities=25% Similarity=0.346 Sum_probs=100.0
Q ss_pred EEEEEecCCCChhHHHHHHHcccccc------------------ccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHH
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVF------------------SEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAM 132 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~------------------~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~ 132 (1527)
+|+++||.+||||||+++|....... ....++|++.....+.|++.+++|+|||||.+|...
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e 83 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE 83 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence 69999999999999999985322111 123578888889999999999999999999999999
Q ss_pred HHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCC
Q psy1758 133 RARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKL 181 (1527)
Q Consensus 133 ~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~ 181 (1527)
+.++++.+|++|+|+|+.+|++.||.++|+.+...++|.++++||+|..
T Consensus 84 ~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 84 IRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred hhhhhcccCceEEEeeccCCccchhHHHHHhhhhccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999985
|
| >d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=3.2e-20 Score=173.60 Aligned_cols=81 Identities=21% Similarity=0.347 Sum_probs=78.3
Q ss_pred eEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceee
Q psy1758 1314 ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAP 1393 (1527)
Q Consensus 1314 ~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~ 1393 (1527)
++||||++++|++|++|+|.|+++|++|||+++++++. +++++|+|.+|+++++||+++|+++|+|+|+|+++|+||+|
T Consensus 1 VllEPi~~~~I~~p~e~~g~v~~~l~~rrg~i~~~~~~-~~~~~i~a~iP~~e~~g~~~~Lrs~T~G~g~~~~~f~~y~~ 79 (89)
T d2bv3a5 1 VILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPR-GNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQE 79 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHTTTCEEEEEEEE-TTEEEEEEEEEGGGCTTHHHHHHHTTTTCCEEEEEEEEEEE
T ss_pred CEECcEEEEEEEECHHHHHHHHHHHHHcCCccccCCcc-cccEEEEEECCHHHHhhHHHhhhhcCCCCEEEEEEecCccc
Confidence 58999999999999999999999999999999999985 57899999999999999999999999999999999999999
Q ss_pred cc
Q psy1758 1394 FY 1395 (1527)
Q Consensus 1394 ~~ 1395 (1527)
++
T Consensus 80 vp 81 (89)
T d2bv3a5 80 VP 81 (89)
T ss_dssp CC
T ss_pred CC
Confidence 97
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=2e-19 Score=190.20 Aligned_cols=152 Identities=17% Similarity=0.181 Sum_probs=117.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|....+...+.++++.++....+..++. ++.+|||||++.|..++..+++.+|++++|+
T Consensus 6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~ 85 (171)
T d2ew1a1 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTY 85 (171)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEee
Confidence 57999999999999999999999998888888888888888887776 5778999999999999999999999999999
Q ss_pred eCCCCCcHH-HHHHHHH---HHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQ-TREAIAH---AKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~q-t~e~i~~---~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|.++....+ ..+++.. ....++|+++|+||+|+.+... .+....+. ..+ .+++++|||++|.||++
T Consensus 86 d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~------~~~--~~~~~~~SAktg~gV~e 157 (171)
T d2ew1a1 86 DITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFS------EAQ--DMYYLETSAKESDNVEK 157 (171)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHH------HHH--TCCEEECCTTTCTTHHH
T ss_pred ecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHH------HhC--CCEEEEEccCCCCCHHH
Confidence 999843222 2222332 2334678999999999865321 11111121 112 24899999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|..|+..
T Consensus 158 ~f~~l~~~ 165 (171)
T d2ew1a1 158 LFLDLACR 165 (171)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988744
|
| >d2dyja1 d.52.7.1 (A:4-94) Ribosome-binding factor A, RbfA {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Alpha-lytic protease prodomain-like superfamily: Ribosome-binding factor A, RbfA family: Ribosome-binding factor A, RbfA domain: Ribosome-binding factor A, RbfA species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=4.4e-20 Score=172.49 Aligned_cols=87 Identities=23% Similarity=0.478 Sum_probs=82.1
Q ss_pred chhhhhhhhhhHHhhhhhccCcceeeeEEEEEEEeCCcceEEEEEEecCChhhHHHHHHHHHHhhHHHHHHHhccccccc
Q psy1758 543 SRIENQIQRDISEIIAFDIQNPIINIITITEVKITLDYSYAKIFFTTFNKDISIKNILDNLSKAKNYIRFKLSKKLHIHT 622 (1527)
Q Consensus 543 ~r~~~~i~~~Iseii~~ei~d~~~~~vtvt~V~~s~Dl~~a~vy~s~~~~~~~~~~~~~~l~~~~g~ir~~l~~~l~lr~ 622 (1527)
.|.++++++.|+++++ +++||++.+||||+|++|+||++|+||||+++++ ++++++|++++|+||+.|+++++||+
T Consensus 3 ~rle~~i~r~is~il~-~~~d~~~~~vtIt~V~~S~Dl~~akVyvs~~~~~---~~~~~~L~~~~~~ir~~l~~~l~~r~ 78 (91)
T d2dyja1 3 AHLEAQLKRALAEEIQ-ALEDPRLFLLTVEAVRLSKDGSVLSVYVEAFREE---EGALRALSRAERRLVAALARRVRMRR 78 (91)
T ss_dssp HHHHHHHHHHHHHHHH-TCCCGGGTTCEEEEEEECTTSSEEEEEEECSSCH---HHHHHHHHHTHHHHHHHHHTTSCCSS
T ss_pred HHHHHHHHHHHHHHHH-HccCcccCceEEEEEEECCCcccEEEEEEeccch---HHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence 4788999999999986 8999999999999999999999999999999865 57899999999999999999999999
Q ss_pred CCeEEEEeccc
Q psy1758 623 LPILNFFYDNS 633 (1527)
Q Consensus 623 ~P~l~F~~D~s 633 (1527)
+|+|+|++|+|
T Consensus 79 ~P~L~F~~D~s 89 (91)
T d2dyja1 79 LPRLEFLPWRA 89 (91)
T ss_dssp CCEEEEEEGGG
T ss_pred CCEEEEEeCCC
Confidence 99999999997
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.79 E-value=1.8e-20 Score=209.44 Aligned_cols=157 Identities=28% Similarity=0.373 Sum_probs=102.4
Q ss_pred CEEEEEecCCCChhHHHHHHHcccc-------------------------------ccccCCceeEEEEEEEEEeCCeEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNV-------------------------------VFSEAGGITQHIGAYNVVTNHGSI 118 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~-------------------------------~~~~~~giT~~~~~~~~~~~~~~i 118 (1527)
.+|+++||+|||||||+++|..... ......|+|++.....+.+.+..+
T Consensus 25 iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i 104 (245)
T d1r5ba3 25 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRF 104 (245)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEE
T ss_pred eEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccccee
Confidence 4699999999999999999943110 122334788888888889999999
Q ss_pred EEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCC-EEEEEEcccCCcchh-----
Q psy1758 119 TFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVM-------PQTREAIAHAKISGVP-LIVAINKIDKLDINL----- 185 (1527)
Q Consensus 119 ~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~-------~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~----- 185 (1527)
+|+|||||.+|..++.+++..+|++++|+|+.+|+. .||.+++..+...++| +++++||+|+...+.
T Consensus 105 ~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~~~~~~e~~~ 184 (245)
T d1r5ba3 105 SLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERY 184 (245)
T ss_dssp EECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHH
T ss_pred eeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCCCCccchhHHHH
Confidence 999999999999999999999999999999999864 4899999999999998 889999999975432
Q ss_pred HHHHHHHhhhccc--ccccCCCCcEEEeeccCCCChhHHHHHH
Q psy1758 186 DRIKQDLISEQVI--PEEYGGASPFISISAKTGVGINKLLENI 226 (1527)
Q Consensus 186 ~~~~~~l~~~~~~--~~~~~~~~~v~~iSAktg~gI~eL~~~l 226 (1527)
.++..++...... .......+|++|+||++|+||.++++..
T Consensus 185 ~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s~ 227 (245)
T d1r5ba3 185 KECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSS 227 (245)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTT
T ss_pred HHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhcc
Confidence 2222222211100 0011124689999999999999886653
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.79 E-value=1.4e-19 Score=199.97 Aligned_cols=153 Identities=30% Similarity=0.386 Sum_probs=110.4
Q ss_pred CEEEEEecCCCChhHHHHHHHccc-------------------------------cccccCCceeEEEEEEEEEeCCeEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTN-------------------------------VVFSEAGGITQHIGAYNVVTNHGSI 118 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~-------------------------------~~~~~~~giT~~~~~~~~~~~~~~i 118 (1527)
.+|+++||+|||||||+.+|.... .......|+|.+.....+++++..+
T Consensus 4 iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i 83 (224)
T d1jnya3 4 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFF 83 (224)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEE
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCcee
Confidence 579999999999999999885311 0123346889999999999999999
Q ss_pred EEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCC-------cHHHHHHHHHHHHcCCC-EEEEEEcccCCcchhHH---
Q psy1758 119 TFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGV-------MPQTREAIAHAKISGVP-LIVAINKIDKLDINLDR--- 187 (1527)
Q Consensus 119 ~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~-------~~qt~e~i~~~~~~~vp-iIvviNKiDl~~~~~~~--- 187 (1527)
+|+|||||++|..++.++++.+|++|+|+|+.+|+ .+|+++++..+...+++ +|+++||+|+...+.+.
T Consensus 84 ~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~~~~~~ 163 (224)
T d1jnya3 84 TIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRY 163 (224)
T ss_dssp EECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHH
T ss_pred EEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCccccHHHH
Confidence 99999999999999999999999999999999984 67899999999988886 88999999997543222
Q ss_pred --HHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 188 --IKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 188 --~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
+...+.............++++++||.+|.||.+.
T Consensus 164 ~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~~ 200 (224)
T d1jnya3 164 KEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 200 (224)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred HHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcccc
Confidence 11112111111112234578999999999998653
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=5.7e-19 Score=186.30 Aligned_cols=152 Identities=16% Similarity=0.177 Sum_probs=114.7
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|....+.....+.++.+.....+...+. .+.||||||+++|..++..+++.+|++|+|+
T Consensus 6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~ 85 (169)
T d3raba_ 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMY 85 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEEE
Confidence 57999999999999999999998887777776766666666666654 7889999999999999999999999999999
Q ss_pred eCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++.... .+.+.+........|+++++||+|+.+... .+....+. ..++ ++++++||++|.||++
T Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~------~~~~--~~~~e~Sak~g~gv~e 157 (169)
T d3raba_ 86 DITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLA------DHLG--FEFFEASAKDNINVKQ 157 (169)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHH------HHHT--CEEEECBTTTTBSHHH
T ss_pred ECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHH------HHcC--CEEEEecCCCCcCHHH
Confidence 99983222 222222333334677999999999865321 11111121 1222 4899999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|+.|+..
T Consensus 158 ~f~~l~~~ 165 (169)
T d3raba_ 158 TFERLVDV 165 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999754
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=6e-19 Score=187.68 Aligned_cols=152 Identities=20% Similarity=0.187 Sum_probs=120.3
Q ss_pred CCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCCh--------hhHHHHHHhhccc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGH--------EAFTAMRARGAKV 139 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~--------e~f~~~~~~~~~~ 139 (1527)
.+.|+++|++|||||||+++|++... ..+..+++|.+.........+..+.+|||||+ +.+.....+++..
T Consensus 5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 84 (178)
T d1wf3a1 5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD 84 (178)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhccccccccccc
Confidence 45799999999999999999998874 56777888988888888899999999999995 4445556677899
Q ss_pred cCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 140 TDIVVLVVAADDGVMPQTREAIAHAKI--SGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 140 aD~~IlVvda~~g~~~qt~e~i~~~~~--~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
||++++|+|++++...+...++..++. .+.|+++|+||+|+..... .....+.. ..+...++++||++|.
T Consensus 85 ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~-------~~~~~~~~~iSA~~~~ 156 (178)
T d1wf3a1 85 VNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE-EAMKAYHE-------LLPEAEPRMLSALDER 156 (178)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH-HHHHHHHH-------TSTTSEEEECCTTCHH
T ss_pred ccceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccCHH-HHHHHHHh-------hcccCceEEEecCCCC
Confidence 999999999999988877666666654 3689999999999976432 22222111 1223478899999999
Q ss_pred ChhHHHHHHHH
Q psy1758 218 GINKLLENISL 228 (1527)
Q Consensus 218 gI~eL~~~l~~ 228 (1527)
||++|++.|..
T Consensus 157 gi~~L~~~i~~ 167 (178)
T d1wf3a1 157 QVAELKADLLA 167 (178)
T ss_dssp HHHHHHHHHHT
T ss_pred CHHHHHHHHHH
Confidence 99999999963
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=4e-19 Score=186.83 Aligned_cols=151 Identities=18% Similarity=0.153 Sum_probs=117.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++++|||||+++|.+..+.....++++.+.....+..++. .+.+|||||++.|..++..+++.+|++++|+
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 84 (166)
T d1z0fa1 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 84 (166)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEe
Confidence 57999999999999999999999988888887888777777777776 7888999999999999999999999999999
Q ss_pred eCCCCCc----HHHHHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVM----PQTREAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~----~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++... ..+...+........|+++++||+|+...... +....+. ..+ .+++++|||++|.||++
T Consensus 85 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~e~Saktg~~v~e 156 (166)
T d1z0fa1 85 DITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFA------EEN--GLLFLEASAKTGENVED 156 (166)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH------HHT--TCEEEECCTTTCTTHHH
T ss_pred ccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHH------HHc--CCEEEEEeCCCCCCHHH
Confidence 9998432 23333333334456789999999998643221 1111111 112 25899999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+|+.|+.
T Consensus 157 ~f~~i~~ 163 (166)
T d1z0fa1 157 AFLEAAK 163 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999864
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.78 E-value=3.6e-19 Score=186.82 Aligned_cols=156 Identities=17% Similarity=0.132 Sum_probs=114.5
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
|..+|+++|.+|+|||||+++|.+..+.. .+.|.......+..++..+.+|||||++.|...+..++..+|++++|+
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 77 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDVDT---ISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV 77 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSS---CCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCCCc---ccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeee
Confidence 45689999999999999999998876532 223444556667888999999999999999999999999999999999
Q ss_pred eCCCCCc-HHHHHHHHHH----HHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 148 AADDGVM-PQTREAIAHA----KISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 148 da~~g~~-~qt~e~i~~~----~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
|+++... ....+.+... ...++|+++|+||+|+.+................ ....++++++||++|+||+++
T Consensus 78 d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~e~ 154 (165)
T d1ksha_ 78 DSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSI---RSHHWRIQGCSAVTGEDLLPG 154 (165)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGC---CSSCEEEEECCTTTCTTHHHH
T ss_pred ecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhh---hcCCCEEEEEECCCCCCHHHH
Confidence 9988432 2333333322 3457899999999999764322222221111111 122468999999999999999
Q ss_pred HHHHHHH
Q psy1758 223 LENISLQ 229 (1527)
Q Consensus 223 ~~~l~~~ 229 (1527)
|++|..+
T Consensus 155 ~~~l~~~ 161 (165)
T d1ksha_ 155 IDWLLDD 161 (165)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999754
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1e-18 Score=185.68 Aligned_cols=157 Identities=20% Similarity=0.224 Sum_probs=111.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|....+...+.+++.. ........++. .+.+|||||++.|..++..+++.+|++++|+
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 81 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-eccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence 47999999999999999999999887666665543 33333444444 6889999999999999999999999999999
Q ss_pred eCCCCCcH-----HHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcc--------cccccCCCCcEEEeecc
Q psy1758 148 AADDGVMP-----QTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQV--------IPEEYGGASPFISISAK 214 (1527)
Q Consensus 148 da~~g~~~-----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~--------~~~~~~~~~~v~~iSAk 214 (1527)
|+++...- ++...+.. ...++|++||+||+|+.+............... .... .+..+|++|||+
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~-~~~~~~~E~SAk 159 (177)
T d1kmqa_ 82 SIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR-IGAFGYMECSAK 159 (177)
T ss_dssp ETTCHHHHHHHHHTHHHHHHH-HSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHH-TTCSEEEECCTT
T ss_pred ccchhHHHHHHHHHHHHHHHH-hCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHH-cCCcEEEEecCC
Confidence 99983321 12222222 234789999999999976433222111111110 1111 234689999999
Q ss_pred CCCChhHHHHHHHHH
Q psy1758 215 TGVGINKLLENISLQ 229 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~ 229 (1527)
+|.||+++|+.+...
T Consensus 160 t~~gi~e~F~~i~~~ 174 (177)
T d1kmqa_ 160 TKDGVREVFEMATRA 174 (177)
T ss_dssp TCTTHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHH
Confidence 999999999998754
|
| >d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.77 E-value=2.2e-19 Score=170.29 Aligned_cols=81 Identities=22% Similarity=0.297 Sum_probs=78.3
Q ss_pred eEeeeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceee
Q psy1758 1314 ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAP 1393 (1527)
Q Consensus 1314 ~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~ 1393 (1527)
++||||++++|.+|++|+|.|+++|++|||++.+++.. ++++.|+|.+|+++++||+++|+++|+|+|+|++.|+||+|
T Consensus 1 VllEPi~~~~I~~p~e~~g~v~~~l~~rrg~i~~~~~~-~~~~~i~a~iP~~e~~g~~~~Lrs~T~G~g~~~~~f~~y~~ 79 (96)
T d2dy1a5 1 VLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQE-GALSVVHAEVPLAEVLEYYKALPGLTGGAGAYTLEFSHYAE 79 (96)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEE-TTEEEEEEEEEGGGCTTHHHHHHHHHTTCCEEEEEEEEEEE
T ss_pred CeECcEEEEEEEECHHHHHHHHHHHHhcCCEEeecccc-CCcEEEEEEEeHHHhhCHHHHhhhhCCCcEEEEEEeCcccc
Confidence 58999999999999999999999999999999999985 57899999999999999999999999999999999999999
Q ss_pred cc
Q psy1758 1394 FY 1395 (1527)
Q Consensus 1394 ~~ 1395 (1527)
++
T Consensus 80 vp 81 (96)
T d2dy1a5 80 VP 81 (96)
T ss_dssp CC
T ss_pred CC
Confidence 97
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.2e-18 Score=182.66 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=116.7
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|.+..+...+.++++.+........++. .+.+|||+|++.|...+..+++.+|++++|+
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 80 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY 80 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence 47999999999999999999999988888888877777766666654 6789999999999999999999999999999
Q ss_pred eCCCCCcHH----HHHHHHHHHHcCCCEEEEEEcccCCcchhHH--HHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQ----TREAIAHAKISGVPLIVAINKIDKLDINLDR--IKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~q----t~e~i~~~~~~~vpiIvviNKiDl~~~~~~~--~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++....+ +...+......++|+++|+||+|+.+..... ....+. ..+ .+++++|||++|.||++
T Consensus 81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~e~SAk~g~~v~e 152 (164)
T d1yzqa1 81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKA------KEL--NVMFIETSAKAGYNVKQ 152 (164)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHH------HHT--TCEEEECCTTTCTTHHH
T ss_pred ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHH------HHc--CCEEEEecCCCCcCHHH
Confidence 999844322 2222333344578999999999986532211 111111 111 25899999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+|+.|+.
T Consensus 153 ~f~~i~~ 159 (164)
T d1yzqa1 153 LFRRVAA 159 (164)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999974
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.76 E-value=9.3e-19 Score=183.63 Aligned_cols=153 Identities=18% Similarity=0.210 Sum_probs=115.6
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAA 149 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda 149 (1527)
.+|+++|++|+|||||+++|....+.....+++. .....+..++..+.+|||||++.|...+..++..+|++++|+|+
T Consensus 3 ~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 80 (164)
T d1zd9a1 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDA 80 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCS--EEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEET
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCcccccce--eeeeeeeeeeEEEEEeeccccccccccccccccccchhhccccc
Confidence 5799999999999999999999888766666444 34456678888999999999999999999999999999999999
Q ss_pred CCCCc-HHHHHHHHHH----HHcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHH
Q psy1758 150 DDGVM-PQTREAIAHA----KISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223 (1527)
Q Consensus 150 ~~g~~-~qt~e~i~~~----~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~ 223 (1527)
++... ......+..+ ...++|+++|+||+|+.+.. ...+...+...... ...++++++||++|.||+++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~----~~~~~~~e~Sa~~g~gv~e~~ 156 (164)
T d1zd9a1 81 ADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQ----DREICCYSISCKEKDNIDITL 156 (164)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCC----SSCEEEEECCTTTCTTHHHHH
T ss_pred ccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHH----hCCCEEEEEeCcCCcCHHHHH
Confidence 87432 2222233322 23578999999999997643 23333332221111 234689999999999999999
Q ss_pred HHHHH
Q psy1758 224 ENISL 228 (1527)
Q Consensus 224 ~~l~~ 228 (1527)
++|+.
T Consensus 157 ~~l~~ 161 (164)
T d1zd9a1 157 QWLIQ 161 (164)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99974
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=2.5e-18 Score=182.02 Aligned_cols=152 Identities=16% Similarity=0.119 Sum_probs=114.0
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|||||||+++|....+.....++.+.......+..++. .+.+|||||+++|..++..+++.+|++++|+
T Consensus 6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 85 (174)
T d2bmea1 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 85 (174)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEEE
Confidence 57999999999999999999998887776666666655555555554 6889999999999999999999999999999
Q ss_pred eCCCCCcHHH----HHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQT----REAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~qt----~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|.++...... ...+......++|+++|+||+|+...... .....+.. . ..++++++||++|.||++
T Consensus 86 d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~------~--~~~~~~e~Sak~~~gi~e 157 (174)
T d2bmea1 86 DITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQ------E--NELMFLETSALTGENVEE 157 (174)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------H--TTCEEEECCTTTCTTHHH
T ss_pred ecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHH------h--CCCEEEEeeCCCCcCHHH
Confidence 9998433222 22222223357899999999998643221 11111111 1 135899999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|+.+...
T Consensus 158 ~f~~l~~~ 165 (174)
T d2bmea1 158 AFVQCARK 165 (174)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999754
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.76 E-value=9.8e-19 Score=185.37 Aligned_cols=155 Identities=19% Similarity=0.220 Sum_probs=113.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccccc-ccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVF-SEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~-~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
.+..+|+++|++|+|||||+++|.+..+.. ....++ ....+.+.+..+.+||+||++.|..++..+++.+|++++
T Consensus 14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~----~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 89 (176)
T d1fzqa_ 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGF----NIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (176)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTE----EEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeee----eEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEE
Confidence 456899999999999999999998877632 222222 334566788899999999999999999999999999999
Q ss_pred EEeCCCCCcHH-HHHHHHHH----HHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 146 VVAADDGVMPQ-TREAIAHA----KISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 146 Vvda~~g~~~q-t~e~i~~~----~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|+|+++....+ ....+... ...++|+++|+||+|+.+........+...... .....++++++||++|+||+
T Consensus 90 v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~SA~tg~gv~ 166 (176)
T d1fzqa_ 90 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHT---IRDRVWQIQSCSALTGEGVQ 166 (176)
T ss_dssp EEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGG---CCSSCEEEEECCTTTCTTHH
T ss_pred eeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHH---HHhcCCEEEEEeCCCCCCHH
Confidence 99999854332 22333222 334789999999999976443322222111111 11234689999999999999
Q ss_pred HHHHHHHH
Q psy1758 221 KLLENISL 228 (1527)
Q Consensus 221 eL~~~l~~ 228 (1527)
++|++|+.
T Consensus 167 e~~~~l~~ 174 (176)
T d1fzqa_ 167 DGMNWVCK 174 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999864
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.4e-18 Score=183.20 Aligned_cols=150 Identities=17% Similarity=0.134 Sum_probs=95.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|||||||+++|.+..+.... .++.+.....+..++. .+.+|||||++.|..++..+++.+|++|+|+
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~ 79 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 79 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCcC--Ceeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence 47999999999999999999887653322 2223333344555554 7889999999999999999999999999999
Q ss_pred eCCCCCcHHHHH-HHHHHH----HcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 148 AADDGVMPQTRE-AIAHAK----ISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 148 da~~g~~~qt~e-~i~~~~----~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|+++....+... ++..+. ..++|+++|+||+|+.+... ......+. ..+ .++++++||++|.||+
T Consensus 80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~------~~~--~~~~~e~Sak~~~~v~ 151 (168)
T d2gjsa1 80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA------VVF--DCKFIETSAALHHNVQ 151 (168)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHH------HHH--TSEEEECBTTTTBSHH
T ss_pred cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHH------Hhc--CCEEEEEeCCCCcCHH
Confidence 999843322222 222221 34589999999999875321 11111111 122 2589999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
++|+.|+..
T Consensus 152 ~~f~~l~~~ 160 (168)
T d2gjsa1 152 ALFEGVVRQ 160 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999754
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=1.7e-18 Score=185.22 Aligned_cols=158 Identities=23% Similarity=0.299 Sum_probs=119.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHH------------HHHH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFT------------AMRA 134 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~------------~~~~ 134 (1527)
...+|+++|++|||||||+|+|++... ..+..+++|.......+.+++..+.++||||+.... ....
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 86 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 86 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHHH
Confidence 457899999999999999999998774 567777888888888888999999999999964332 3445
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhH---HHHHHHhhhcccccccCCCCcEEEe
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD---RIKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~---~~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
..+..+|++++|+|++.+...+..+++..+...+.|+|+|+||+|+...... +....+... . .+....|++++
T Consensus 87 ~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~-~---~~~~~~~i~~v 162 (186)
T d1mkya2 87 DSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREK-L---YFIDYSPLIFT 162 (186)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHH-C---GGGTTSCEEEC
T ss_pred HHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhcchhhhhhhHHHHHHHH-h---cccCCCeEEEE
Confidence 5678899999999999999999999999999999999999999998753322 122122111 1 22345689999
Q ss_pred eccCCCChhHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~ 229 (1527)
||++|.|+++|++.|...
T Consensus 163 Sa~~g~gv~~L~~~i~~~ 180 (186)
T d1mkya2 163 SADKGWNIDRMIDAMNLA 180 (186)
T ss_dssp BTTTTBSHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999999999999999654
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=4.4e-18 Score=179.66 Aligned_cols=151 Identities=23% Similarity=0.320 Sum_probs=111.9
Q ss_pred EEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCCh---------hhHHHHHHhhcccc
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGH---------EAFTAMRARGAKVT 140 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~---------e~f~~~~~~~~~~a 140 (1527)
+|+++|++|||||||+++|++... ..+..+++|.......+......+.++||||. ..+.......+..+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a 81 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 81 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence 699999999999999999998775 46777888988888888899999999999992 22333444566889
Q ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 141 DIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 141 D~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|++++++|++++...+..+++..++..++|+|+|+||+|+.+....+...++... +..+++++||++|.||+
T Consensus 82 d~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~~~~~~~~~~~~~--------~~~~~i~iSAk~g~gid 153 (171)
T d1mkya1 82 DLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSL--------GFGEPIPVSAEHNINLD 153 (171)
T ss_dssp SEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHGGG--------SSCSCEECBTTTTBSHH
T ss_pred cEEEEeecccccccccccccccccccccccccccchhhhhhhhhhhHHHHHHHhc--------CCCCeEEEecCCCCCHH
Confidence 9999999999999999999888899999999999999999753332222222111 12367899999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
+|+++|..+
T Consensus 154 ~L~~~i~~~ 162 (171)
T d1mkya1 154 TMLETIIKK 162 (171)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999764
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.3e-18 Score=183.77 Aligned_cols=152 Identities=15% Similarity=0.147 Sum_probs=111.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|....+...+.+++..+.....+..++ ..+.+|||||++.|..++..+++.+|++++|+
T Consensus 4 ~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 83 (170)
T d1i2ma_ 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMF 83 (170)
T ss_dssp EEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhcc
Confidence 4799999999999999999999888777777776777666666655 47899999999999999999999999999999
Q ss_pred eCCCCCcHHH-HHHHHHH--HHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 148 AADDGVMPQT-REAIAHA--KISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 148 da~~g~~~qt-~e~i~~~--~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
|+++....+. .+++... ...++|+++|+||+|+............. ....++++++||++|.||+++|+
T Consensus 84 d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~--------~~~~~~~~e~Sak~~~~v~e~f~ 155 (170)
T d1i2ma_ 84 DVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFH--------RKKNLQYYDISAKSNYNFEKPFL 155 (170)
T ss_dssp ETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTSHHHH--------SSCSSEEEEEBTTTTBTTTHHHH
T ss_pred ccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHHHHHH--------HHcCCEEEEEeCCCCCCHHHHHH
Confidence 9998443222 2222222 13579999999999997643221111111 12246899999999999999999
Q ss_pred HHHHH
Q psy1758 225 NISLQ 229 (1527)
Q Consensus 225 ~l~~~ 229 (1527)
.|+..
T Consensus 156 ~l~~~ 160 (170)
T d1i2ma_ 156 WLARK 160 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99753
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.75 E-value=6.1e-19 Score=186.80 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=89.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|.+..+.....++++.+.....+..++. .+.||||||++.|..++..+++.+|++|+|+
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~ 86 (173)
T d2fu5c1 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVY 86 (173)
T ss_dssp EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEEE
Confidence 57999999999999999999998887777788888888888888775 5677999999999999999999999999999
Q ss_pred eCCCCCcH----HHHHHHHHHHHcCCCEEEEEEcccCCcchhHHH--HHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMP----QTREAIAHAKISGVPLIVAINKIDKLDINLDRI--KQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~----qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~--~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++.... ++...+......+.|+++|+||+|+........ ..... ..+ .++++++||++|.||++
T Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~------~~~--~~~~~e~Sa~~g~gv~e 158 (173)
T d2fu5c1 87 DITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLA------LDY--GIKFMETSAKANINVEN 158 (173)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHH------HHH--TCEEEECCC---CCHHH
T ss_pred ECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHH------Hhc--CCEEEEEeCCCCCCHHH
Confidence 99984322 222222333345688999999999876322111 11111 111 25899999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|++|+..
T Consensus 159 ~f~~l~~~ 166 (173)
T d2fu5c1 159 AFFTLARD 166 (173)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999854
|
| >d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=1.2e-18 Score=171.65 Aligned_cols=93 Identities=23% Similarity=0.370 Sum_probs=86.8
Q ss_pred CCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEec
Q psy1758 1117 NSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITG 1196 (1527)
Q Consensus 1117 ~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~g 1196 (1527)
++++||+++||+++||+|.|+++|+||+||+|+.||+|++..+ ..++||++|+.+.|.++.++++|.||||++|+|
T Consensus 22 d~~~p~~a~Vfk~~~d~~~G~i~~~RV~sG~l~~g~~v~~~~~----~~~~rv~~l~~~~g~~~~~v~~~~aGdI~~i~g 97 (121)
T d2bv3a1 22 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTK----GRKERVARLLRMHANHREEVEELKAGDLGAVVG 97 (121)
T ss_dssp CTTSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTT----TEEEEECEEEEECSSCEEEESEEETTCEEEEES
T ss_pred CCCCCEEEEEEeeeecCCCCeEEeeeecccccCCCCEEEEccC----CCEEEEeeeeeeecccccEeeEeccccceEEec
Confidence 5578999999999999999999999999999999999998755 346899999999999999999999999999999
Q ss_pred ceecccCCeeeCCCCCC
Q psy1758 1197 IEEICIGSTICDPSKPN 1213 (1527)
Q Consensus 1197 l~~~~iGdTi~~~~~~~ 1213 (1527)
++++.+|||||+.++|.
T Consensus 98 l~~~~~GDTl~~~~~p~ 114 (121)
T d2bv3a1 98 LKETITGDTLVGEDAPR 114 (121)
T ss_dssp CSSCCTTCEEEETTSCC
T ss_pred cCCceeCCEEecCCCCc
Confidence 99999999999988863
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2e-18 Score=183.20 Aligned_cols=152 Identities=15% Similarity=0.187 Sum_probs=113.8
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|.+|+|||||+++|.+..+.....++++.......+..++. .+.+|||||+++|..++...++.+|++|+|+
T Consensus 5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~ 84 (175)
T d2f9la1 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVY 84 (175)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEEE
Confidence 57999999999999999999999887777777777777777777765 6789999999999999999999999999999
Q ss_pred eCCCCCc----HHHHHHHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVM----PQTREAIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~----~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|.++... ..+...+......++|+++|+||+|+.+.... ........ . ...+++++||++|.||++
T Consensus 85 d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~------~--~~~~~~e~Sa~~g~~i~e 156 (175)
T d2f9la1 85 DIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE------K--NNLSFIETSALDSTNVEE 156 (175)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------H--TTCEEEECCTTTCTTHHH
T ss_pred ECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhc------c--cCceEEEEecCCCcCHHH
Confidence 9998322 22222233333356899999999999753211 11111111 1 135899999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|+.+...
T Consensus 157 ~f~~l~~~ 164 (175)
T d2f9la1 157 AFKNILTE 164 (175)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2.1e-18 Score=181.32 Aligned_cols=153 Identities=24% Similarity=0.248 Sum_probs=112.0
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
|..+|+++|++|||||||+++|.+..+.....+++.. ........++. .+.+||++|++.+..++..+++.+|++++
T Consensus 2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il 80 (167)
T d1kaoa_ 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-eeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence 5578999999999999999999998887666665543 33344445554 67889999999999999999999999999
Q ss_pred EEeCCCCCcHHHH-HHHHHH----HHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 146 VVAADDGVMPQTR-EAIAHA----KISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 146 Vvda~~g~~~qt~-e~i~~~----~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
|+|+++....... .++..+ ...++|++||+||+|+...... .....+. ..+ .++++++||++|.|
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~------~~~--~~~~~e~Sak~g~~ 152 (167)
T d1kaoa_ 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA------EEW--GCPFMETSAKSKTM 152 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH------HHH--TSCEEEECTTCHHH
T ss_pred eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHH------HHc--CCeEEEECCCCCcC
Confidence 9999983322221 122222 2356899999999998653211 1111111 122 25899999999999
Q ss_pred hhHHHHHHHHH
Q psy1758 219 INKLLENISLQ 229 (1527)
Q Consensus 219 I~eL~~~l~~~ 229 (1527)
|+++|+.|+.+
T Consensus 153 i~e~f~~i~~~ 163 (167)
T d1kaoa_ 153 VDELFAEIVRQ 163 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999754
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.75 E-value=2.7e-18 Score=180.58 Aligned_cols=154 Identities=21% Similarity=0.211 Sum_probs=115.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
|..+|+++|.+|||||||+++|.+..+...+.+++...........++. .+.+|||+|++.+..++..+++.+|++|+
T Consensus 3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (167)
T d1z0ja1 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 82 (167)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence 5578999999999999999999999988777776666666666666554 67799999999999999999999999999
Q ss_pred EEeCCCCCcHHHHHHH----HHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 146 VVAADDGVMPQTREAI----AHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 146 Vvda~~g~~~qt~e~i----~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+|+++....+..+.| ......+.|+++|+||+|+.+... .+....+. ..+ .++++++||++|.||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~------~~~--~~~~~e~SAk~~~nV 154 (167)
T d1z0ja1 83 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYA------DSI--HAIFVETSAKNAINI 154 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHH------HHT--TCEEEECBTTTTBSH
T ss_pred EeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHH------HHc--CCEEEEEecCCCCCH
Confidence 9999973332222222 222345678999999999965321 11111111 112 258999999999999
Q ss_pred hHHHHHHHHH
Q psy1758 220 NKLLENISLQ 229 (1527)
Q Consensus 220 ~eL~~~l~~~ 229 (1527)
+++|..|+.+
T Consensus 155 ~e~f~~l~~~ 164 (167)
T d1z0ja1 155 NELFIEISRR 164 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998743
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2.5e-18 Score=180.93 Aligned_cols=154 Identities=25% Similarity=0.266 Sum_probs=113.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
|..+|+++|++|||||||+++|....+...+.+++..... ..+..++. .+.+||++|++.+..++..+++.+|++++
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 80 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccc-eeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence 5678999999999999999999999987777666654443 33444443 68899999999999999999999999999
Q ss_pred EEeCCCCCcHHH----HHHHHH-HHHcCCCEEEEEEcccCCcchhHHH--HHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 146 VVAADDGVMPQT----REAIAH-AKISGVPLIVAINKIDKLDINLDRI--KQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 146 Vvda~~g~~~qt----~e~i~~-~~~~~vpiIvviNKiDl~~~~~~~~--~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
|+|+++....+. ...+.. ....++|+++|+||+|+........ ...+.. ++ ..++++++||++|.|
T Consensus 81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~------~~-~~~~~~e~Sak~g~g 153 (167)
T d1c1ya_ 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR------QW-CNCAFLESSAKSKIN 153 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH------HT-TSCEEEECBTTTTBS
T ss_pred eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHH------Hh-CCCEEEEEcCCCCcC
Confidence 999998433222 222222 2234689999999999975322111 111111 11 236899999999999
Q ss_pred hhHHHHHHHHH
Q psy1758 219 INKLLENISLQ 229 (1527)
Q Consensus 219 I~eL~~~l~~~ 229 (1527)
|+++|+.|+..
T Consensus 154 v~e~F~~l~~~ 164 (167)
T d1c1ya_ 154 VNEIFYDLVRQ 164 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999754
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=1.9e-18 Score=183.75 Aligned_cols=156 Identities=26% Similarity=0.279 Sum_probs=118.0
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch---
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG--- 999 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~--- 999 (1527)
..|+++|++|+|||||+++|++..-. ......++|.......+.+.+..++++||||+.++.
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~---------------~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 70 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVA---------------PISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDAL 70 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCS---------------CCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCce---------------eecccCCcccccccceeeeeeeeeeeccccccccccccc
Confidence 47999999999999999999865211 122345677777777788899999999999986643
Q ss_pred -----HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHc--CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 1000 -----GEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKL--GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 1000 -----~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~--glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
..+.+++..||++|+|+|++++..++...+++.+... ++|+++|+||+|+... .++..+.+.+.+ .
T Consensus 71 ~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~---~--- 143 (178)
T d1wf3a1 71 GEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY-PEEAMKAYHELL---P--- 143 (178)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS-HHHHHHHHHHTS---T---
T ss_pred chhcccccccccccccceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccC-HHHHHHHHHhhc---c---
Confidence 3344556789999999999999888887777766554 6789999999999653 233333333221 1
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
...++++||++|. |++.|++.|.+.+|.
T Consensus 144 ---~~~~~~iSA~~~~----------gi~~L~~~i~~~lpe 171 (178)
T d1wf3a1 144 ---EAEPRMLSALDER----------QVAELKADLLALMPE 171 (178)
T ss_dssp ---TSEEEECCTTCHH----------HHHHHHHHHHTTCCB
T ss_pred ---cCceEEEecCCCC----------CHHHHHHHHHHhCCC
Confidence 1247889999998 999999999999973
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.9e-18 Score=185.05 Aligned_cols=158 Identities=18% Similarity=0.215 Sum_probs=111.6
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|.+|+|||||+++|....+...+.+++. +.....+...+. .+.+|||+|++.|..++..+++.+|++++|
T Consensus 9 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv 87 (185)
T d2atxa1 9 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 87 (185)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeeec
Confidence 45899999999999999999999888766666543 333444445443 678999999999999999999999999999
Q ss_pred EeCCCCCc-----HHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcc--------cccccCCCCcEEEeec
Q psy1758 147 VAADDGVM-----PQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQV--------IPEEYGGASPFISISA 213 (1527)
Q Consensus 147 vda~~g~~-----~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~--------~~~~~~~~~~v~~iSA 213 (1527)
||+++... .+|...++. ...++|+++|+||+|+.+............... ....+ +.++|++|||
T Consensus 88 ~d~t~~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~-~~~~~~E~SA 165 (185)
T d2atxa1 88 FSVVNPASFQNVKEEWVPELKE-YAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEI-GACCYVECSA 165 (185)
T ss_dssp EETTCHHHHHHHHHTHHHHHHH-HSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHH-TCSCEEECCT
T ss_pred cccchHHHHHHHHHHHHHHHHh-cCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHc-CCCEEEEecC
Confidence 99998332 122222222 245789999999999976322111100000000 01111 3468999999
Q ss_pred cCCCChhHHHHHHHHH
Q psy1758 214 KTGVGINKLLENISLQ 229 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~ 229 (1527)
++|.||+++|+.++..
T Consensus 166 k~~~gv~e~F~~li~~ 181 (185)
T d2atxa1 166 LTQKGLKTVFDEAIIA 181 (185)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHH
Confidence 9999999999998754
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=6.1e-18 Score=180.86 Aligned_cols=164 Identities=25% Similarity=0.257 Sum_probs=121.7
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCC---
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHA--- 996 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~--- 996 (1527)
.+..+|||+||+|||||||+|+|++..... .....+.|.......+.+++..+.++||||+.
T Consensus 6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~ 70 (186)
T d1mkya2 6 TDAIKVAIVGRPNVGKSTLFNAILNKERAL---------------VSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKS 70 (186)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEE---------------ECCCC------CCEEEEETTEEEEESSCSCC----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCcce---------------eecccccccccceeeeccCCceeeeeccCCccccc
Confidence 345689999999999999999998653221 12234556666667788999999999999964
Q ss_pred ---------CchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhh
Q psy1758 997 ---------DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDK 1067 (1527)
Q Consensus 997 ---------df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~ 1067 (1527)
++...+.+++..+|++++|+|+..|..+|+..++..+...+.|.|+|+||+|+.... +...+++.+.+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~-~~~~~~~~~~~~~ 149 (186)
T d1mkya2 71 RVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHR-EKRYDEFTKLFRE 149 (186)
T ss_dssp -------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTG-GGCHHHHHHHHHH
T ss_pred cccccccccchhHHHHHHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhcch-hhhhhhHHHHHHH
Confidence 355678888999999999999999999999999999999999999999999986543 2233444333322
Q ss_pred hcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1068 LCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1068 l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.... .-..|++++||++|+ |+++|++.|.+.+
T Consensus 150 ~~~~--~~~~~i~~vSa~~g~----------gv~~L~~~i~~~~ 181 (186)
T d1mkya2 150 KLYF--IDYSPLIFTSADKGW----------NIDRMIDAMNLAY 181 (186)
T ss_dssp HCGG--GTTSCEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred Hhcc--cCCCeEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 2111 113589999999998 9999999986644
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.74 E-value=6e-18 Score=180.34 Aligned_cols=152 Identities=28% Similarity=0.337 Sum_probs=112.7
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCCh---------------hhHHHHHHh
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGH---------------EAFTAMRAR 135 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~---------------e~f~~~~~~ 135 (1527)
.|+++|++|+|||||+|+|++..+..+..+|+|+++..+ .+. .+.||||||. ..+......
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~--~~~--~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEI--EWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED 77 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEE--EET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccccc--ccc--cceecccCCceeccccccccccccchhhhhhhhh
Confidence 599999999999999999999888888899999886543 333 4678999993 222334445
Q ss_pred hccccCEEEEEEeCCC-----------CCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhc-ccccccC
Q psy1758 136 GAKVTDIVVLVVAADD-----------GVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQ-VIPEEYG 203 (1527)
Q Consensus 136 ~~~~aD~~IlVvda~~-----------g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~-~~~~~~~ 203 (1527)
+++.+|++++|+|+.. +...+..+.+..+...++|+++|+||+|+..... .....+.... .....
T Consensus 78 ~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~~-~~~~~~~~~~~~~~~~-- 154 (184)
T d2cxxa1 78 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQ-EVINFLAEKFEVPLSE-- 154 (184)
T ss_dssp HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHH-HHHHHHHHHHTCCGGG--
T ss_pred cccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhHH-HHHHHHHHHhcccccc--
Confidence 6788999999999873 5666777888888889999999999999875332 2222221111 11111
Q ss_pred CCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 204 GASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 204 ~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
...+++++||++|.||++|++.|...
T Consensus 155 ~~~~~~~vSA~~g~gi~~L~~~i~~~ 180 (184)
T d2cxxa1 155 IDKVFIPISAKFGDNIERLKNRIFEV 180 (184)
T ss_dssp HHHHEEECCTTTCTTHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 12368999999999999999999754
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=3.4e-18 Score=181.07 Aligned_cols=154 Identities=18% Similarity=0.165 Sum_probs=113.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|||||||+++|....+.....++. .+.....+..++. .+.+|||+|+++|..++..+++.+|++++
T Consensus 5 ~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (173)
T d2fn4a1 5 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL 83 (173)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTC-CEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred CeEEEEEECCCCcCHHHHHHHHHhCCCCccccccc-ccceeeEeccCCeeeeeeccccccccccccccchhhccceeeee
Confidence 44689999999999999999999988876665543 3444556667765 67789999999999999999999999999
Q ss_pred EEeCCCCCcHHHHHHH-H----HHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 146 VVAADDGVMPQTREAI-A----HAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 146 Vvda~~g~~~qt~e~i-~----~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
|+|.++.........| . .....++|+++|+||+|+..... ......+.. .+ .+++++|||++|.|
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~e~Sak~g~g 155 (173)
T d2fn4a1 84 VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGA------SH--HVAYFEASAKLRLN 155 (173)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHH------HT--TCEEEECBTTTTBS
T ss_pred ecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHH------hc--CCEEEEEeCCCCcC
Confidence 9999984432222222 2 12235789999999999865321 111111111 11 25899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
|+++|+.|+...
T Consensus 156 v~e~f~~l~~~i 167 (173)
T d2fn4a1 156 VDEAFEQLVRAV 167 (173)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998653
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=4.2e-18 Score=179.14 Aligned_cols=152 Identities=19% Similarity=0.127 Sum_probs=110.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|....+...+.+++..+.....+..++. .+.+|||+|++.+..++..+++.+|++++|+
T Consensus 4 fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 83 (167)
T d1z08a1 4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVY 83 (167)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEEE
Confidence 57999999999999999999999988888887777777777777664 7889999999999999999999999999999
Q ss_pred eCCCCCcHH----HHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQ----TREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~q----t~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++....+ +.+.+........|+++++||+|+..... .+....+. ..+ .++++++||++|.||++
T Consensus 84 d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a------~~~--~~~~~e~Sak~~~~v~e 155 (167)
T d1z08a1 84 DITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYA------ESV--GAKHYHTSAKQNKGIEE 155 (167)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHH------HHT--TCEEEEEBTTTTBSHHH
T ss_pred eCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHH------HHc--CCeEEEEecCCCcCHHH
Confidence 999844322 23333333456778999999999865321 11111111 122 25899999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|+.|+..
T Consensus 156 ~F~~l~~~ 163 (167)
T d1z08a1 156 LFLDLCKR 163 (167)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999754
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=3.7e-18 Score=183.73 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=113.1
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++|+|||||+++|....+...+.+++.... .......+. .+.||||+|+++|..++..+++.+|++++|
T Consensus 3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 81 (191)
T d2ngra_ 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 81 (191)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeec-ceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence 46899999999999999999999998777777666444 333444444 788999999999999999999999999999
Q ss_pred EeCCCCCcHH-----HHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcc--------cccccCCCCcEEEeec
Q psy1758 147 VAADDGVMPQ-----TREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQV--------IPEEYGGASPFISISA 213 (1527)
Q Consensus 147 vda~~g~~~q-----t~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~--------~~~~~~~~~~v~~iSA 213 (1527)
||+++....+ +.+.+.. ...+.|+++|+||+|+.+............... +... .+.++|+++||
T Consensus 82 ~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~e~SA 159 (191)
T d2ngra_ 82 FSVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARD-LKAVKYVECSA 159 (191)
T ss_dssp EETTCHHHHHHHHHTHHHHHHH-HCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH-TTCSCEEECCT
T ss_pred cccchHHHHHHHHHHHHHHHhh-cCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHH-cCCCeEEEEeC
Confidence 9999843222 2222221 235789999999999975322111110000000 0111 13468999999
Q ss_pred cCCCChhHHHHHHHHH
Q psy1758 214 KTGVGINKLLENISLQ 229 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~ 229 (1527)
++|.||+++|+.++..
T Consensus 160 k~~~~V~e~f~~l~~~ 175 (191)
T d2ngra_ 160 LTQKGLKNVFDEAILA 175 (191)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHH
Confidence 9999999999998754
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2.5e-18 Score=180.83 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=114.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVL 145 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~Il 145 (1527)
+..+|+++|++|||||||+++|.+..+...+.+++..+.. ..+..++. .+.+|||+|++.|..++...++.+|++++
T Consensus 3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il 81 (167)
T d1xtqa1 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 81 (167)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEE-EEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccc-eEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence 4468999999999999999999998887766676666543 34556665 67789999999999999999999999999
Q ss_pred EEeCCCCCcHHHHHH-----HHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 146 VVAADDGVMPQTREA-----IAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 146 Vvda~~g~~~qt~e~-----i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
|+|+++....+.... .......++|+++|+||+|+..... .+....+. ..++ ++++++||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a------~~~~--~~~~e~Sak~~~~ 153 (167)
T d1xtqa1 82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA------ESWN--AAFLESSAKENQT 153 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHH------HHHT--CEEEECCTTCHHH
T ss_pred hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHH------HHcC--CEEEEEecCCCCC
Confidence 999998433322221 1222345789999999999865321 11111121 1222 5899999999999
Q ss_pred hhHHHHHHHHHH
Q psy1758 219 INKLLENISLQA 230 (1527)
Q Consensus 219 I~eL~~~l~~~~ 230 (1527)
|+++|+.|+..+
T Consensus 154 v~~~f~~li~~~ 165 (167)
T d1xtqa1 154 AVDVFRRIILEA 165 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999997654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.74 E-value=2.4e-18 Score=180.51 Aligned_cols=152 Identities=18% Similarity=0.219 Sum_probs=114.0
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|....+.....++++.+.........+. .+.+|||||++.|..++..+++.+|++++|+
T Consensus 3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (164)
T d1z2aa1 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVF 82 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEEE
Confidence 57999999999999999999998887777776666666666666664 6789999999999999999999999999999
Q ss_pred eCCCCCcHHHHH-HHHHHH--HcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 148 AADDGVMPQTRE-AIAHAK--ISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 148 da~~g~~~qt~e-~i~~~~--~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
|+++....+... ++..+. ..++|+++|+||+|+.+... .+....+. ..+ .++++++||++|.||+++
T Consensus 83 d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~------~~~--~~~~~e~Sak~g~~v~e~ 154 (164)
T d1z2aa1 83 STTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLA------KRL--KLRFYRTSVKEDLNVSEV 154 (164)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHH------HHH--TCEEEECBTTTTBSSHHH
T ss_pred eccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHH------HHc--CCEEEEeccCCCcCHHHH
Confidence 999843322222 222222 35799999999999865321 11111111 122 258999999999999999
Q ss_pred HHHHHHH
Q psy1758 223 LENISLQ 229 (1527)
Q Consensus 223 ~~~l~~~ 229 (1527)
|+.|+..
T Consensus 155 f~~l~~~ 161 (164)
T d1z2aa1 155 FKYLAEK 161 (164)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999754
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=2.3e-18 Score=185.92 Aligned_cols=152 Identities=17% Similarity=0.181 Sum_probs=113.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+|+|.+|||||||+++|....+.....++++.......+..++. .+.+|||||+++|..++..+++.+|++|+|+
T Consensus 7 ~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~ 86 (194)
T d2bcgy1 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVY 86 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEE
Confidence 57999999999999999999998887766666555555555555554 7888999999999999999999999999999
Q ss_pred eCCCCCcHHHHH----HHHHHHHcCCCEEEEEEcccCCcchhHHH--HHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQTRE----AIAHAKISGVPLIVAINKIDKLDINLDRI--KQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~qt~e----~i~~~~~~~vpiIvviNKiDl~~~~~~~~--~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+++....+... .+......++|+++|+||+|+.+...... ...... . ...+++++||++|.||++
T Consensus 87 d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~------~--~~~~~~e~SAk~g~gi~e 158 (194)
T d2bcgy1 87 DVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD------A--NKMPFLETSALDSTNVED 158 (194)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH------H--TTCCEEECCTTTCTTHHH
T ss_pred eCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhh------c--cCcceEEEecCcCccHHH
Confidence 999843333222 22233345678999999999976322111 111111 1 135799999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|+.|+..
T Consensus 159 ~f~~l~~~ 166 (194)
T d2bcgy1 159 AFLTMARQ 166 (194)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999743
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=5e-18 Score=179.05 Aligned_cols=151 Identities=16% Similarity=0.165 Sum_probs=115.5
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|....+.....++.+.+.....+...+. .+.+|||||++.|..++..+++.+|++++|+
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~ 86 (170)
T d1r2qa_ 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVY 86 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEEe
Confidence 47999999999999999999999988777777777777767766665 6788999999999999999999999999999
Q ss_pred eCCCCCcHHH-HHHHHHH---HHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQT-REAIAHA---KISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~qt-~e~i~~~---~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|.++...... ...+..+ ...++|+++|+||+|+..... .+....+.. .+ .++++++||++|.||++
T Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~------~~--~~~~~e~SAk~g~~V~e 158 (170)
T d1r2qa_ 87 DITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYAD------DN--SLLFMETSAKTSMNVNE 158 (170)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------HT--TCEEEECCTTTCTTHHH
T ss_pred ccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHH------hc--CCEEEEeeCCCCCCHHH
Confidence 9998433222 2222222 334688999999999865321 111111111 12 35899999999999999
Q ss_pred HHHHHHH
Q psy1758 222 LLENISL 228 (1527)
Q Consensus 222 L~~~l~~ 228 (1527)
+|+.|+.
T Consensus 159 ~f~~l~~ 165 (170)
T d1r2qa_ 159 IFMAIAK 165 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999964
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.73 E-value=4.7e-18 Score=179.83 Aligned_cols=155 Identities=16% Similarity=0.143 Sum_probs=113.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+..+|+++|.+|||||||+++|....+... ..|..............+.+|||||++.+...+...++.+|++++|
T Consensus 10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~---~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v 86 (173)
T d1e0sa_ 10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT---IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 86 (173)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHTTCCCCEEE---EEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEE
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCCCCCc---cceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEE
Confidence 3567899999999999999999987765322 2334444556677788999999999999999999999999999999
Q ss_pred EeCCCCCcHH-HHHHHHHH----HHcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQ-TREAIAHA----KISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~q-t~e~i~~~----~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++..... ..+.+... ...+.|+++++||+|+.+.. ...+...+...... ...++++++||++|+||+
T Consensus 87 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~----~~~~~~~e~SA~tg~gv~ 162 (173)
T d1e0sa_ 87 VDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIR----DRNWYVQPSCATSGDGLY 162 (173)
T ss_dssp EETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCC----SSCEEEEECBTTTTBTHH
T ss_pred EecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHH----hCCCEEEEeeCCCCcCHH
Confidence 9998743322 22333332 23468999999999997642 33333332211111 123579999999999999
Q ss_pred HHHHHHHH
Q psy1758 221 KLLENISL 228 (1527)
Q Consensus 221 eL~~~l~~ 228 (1527)
++|++|..
T Consensus 163 e~~~~l~~ 170 (173)
T d1e0sa_ 163 EGLTWLTS 170 (173)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999964
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=7.9e-18 Score=177.54 Aligned_cols=152 Identities=20% Similarity=0.254 Sum_probs=105.6
Q ss_pred CEEEEEecCCCChhHHHHHHHcccccccc-CCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSE-AGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~-~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+|+++|++++|||||+++|.+..+.... .++++.+.....+...+. .+.||||||++.|..++..+++.+|++++|
T Consensus 7 fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v 86 (170)
T d2g6ba1 7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLL 86 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEEE
Confidence 57999999999999999999998875443 445556666666777776 678999999999999999999999999999
Q ss_pred EeCCCCCcHHHHH----HHHHHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQTRE----AIAHAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~qt~e----~i~~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|.++....+... ..........|+++|+||+|+...... +....+. ..+ .++++++||++|.||+
T Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~------~~~--~~~~~e~Sak~g~gi~ 158 (170)
T d2g6ba1 87 YDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLA------KEY--GLPFMETSAKTGLNVD 158 (170)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHH------HHH--TCCEEECCTTTCTTHH
T ss_pred ecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHH------HHc--CCEEEEEeCCCCcCHH
Confidence 9999844332222 222223346789999999998763221 1111121 122 2589999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
++|+.|+..
T Consensus 159 e~f~~l~~~ 167 (170)
T d2g6ba1 159 LAFTAIAKE 167 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999754
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=3.7e-18 Score=182.41 Aligned_cols=158 Identities=18% Similarity=0.199 Sum_probs=113.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~I 144 (1527)
++..+|+++|++|||||||+++|.+..+...+.+++. +.....+..++. .+.+||++|++.|..++..+++.+|+++
T Consensus 3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 81 (183)
T d1mh1a_ 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (183)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence 4567999999999999999999999988776666554 333344445554 6789999999999999999999999999
Q ss_pred EEEeCCCCCcHH-----HHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcc----------cccccCCCCcEE
Q psy1758 145 LVVAADDGVMPQ-----TREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQV----------IPEEYGGASPFI 209 (1527)
Q Consensus 145 lVvda~~g~~~q-----t~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~----------~~~~~~~~~~v~ 209 (1527)
+|+|+++....+ |...+. ....++|+++|+||+|+...... ......... .... .+.++|+
T Consensus 82 lv~d~~~~~sf~~i~~~~~~~~~-~~~~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~ 157 (183)
T d1mh1a_ 82 ICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDT--IEKLKEKKLTPITYPQGLAMAKE-IGAVKYL 157 (183)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHH-HHSTTSCEEEEEECHHHHTCHHH--HHHHHHTTCCCCCHHHHHHHHHH-TTCSEEE
T ss_pred eeeccchHHHHHHHHHHHHHHHH-HhCCCCcEEEEeecccchhhhhh--hhhhhhccccchhhHHHHHHHHH-cCCceEE
Confidence 999999843222 122222 12347899999999998653211 111111100 0111 1346899
Q ss_pred EeeccCCCChhHHHHHHHHH
Q psy1758 210 SISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 210 ~iSAktg~gI~eL~~~l~~~ 229 (1527)
+|||++|.||+++|+.|+..
T Consensus 158 E~SAk~~~~V~e~F~~l~~~ 177 (183)
T d1mh1a_ 158 ECSALTQRGLKTVFDEAIRA 177 (183)
T ss_dssp ECCTTTCTTHHHHHHHHHHH
T ss_pred EcCCCCCcCHHHHHHHHHHH
Confidence 99999999999999999754
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=8e-18 Score=178.14 Aligned_cols=154 Identities=23% Similarity=0.288 Sum_probs=98.8
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC---eEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH---GSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~---~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
++|+++|++|||||||+++|.+..+.....++.+...........+ ..+.+|||||++.+..++..+++.+|++++|
T Consensus 3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (175)
T d1ky3a_ 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLV 82 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEEE
Confidence 5799999999999999999999887665555444333333333332 3688999999999999999999999999999
Q ss_pred EeCCCCCcHH----HHHHHHHHH----HcCCCEEEEEEcccCCcchh---HHHHHHHhhhcccccccCCCCcEEEeeccC
Q psy1758 147 VAADDGVMPQ----TREAIAHAK----ISGVPLIVAINKIDKLDINL---DRIKQDLISEQVIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 147 vda~~g~~~q----t~e~i~~~~----~~~vpiIvviNKiDl~~~~~---~~~~~~l~~~~~~~~~~~~~~~v~~iSAkt 215 (1527)
+|+++....+ |.+.+.... ..++|+++|+||+|+.+... ....+++. ..+ +..+++++||++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~------~~~-~~~~~~e~SA~~ 155 (175)
T d1ky3a_ 83 YDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELA------KSL-GDIPLFLTSAKN 155 (175)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHH------HHT-TSCCEEEEBTTT
T ss_pred eecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHH------HHc-CCCeEEEEeCCC
Confidence 9999843222 222222211 13689999999999875321 11112221 112 346899999999
Q ss_pred CCChhHHHHHHHHHH
Q psy1758 216 GVGINKLLENISLQA 230 (1527)
Q Consensus 216 g~gI~eL~~~l~~~~ 230 (1527)
|.||+++|+.|+...
T Consensus 156 g~gv~e~f~~l~~~~ 170 (175)
T d1ky3a_ 156 AINVDTAFEEIARSA 170 (175)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999997543
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.2e-17 Score=175.26 Aligned_cols=152 Identities=26% Similarity=0.321 Sum_probs=113.1
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++|||||||+++|.+..+...+.++++...... +...+. .+.+||++|++.|...+...++.+|++++|
T Consensus 3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv 81 (166)
T d1ctqa_ 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence 36899999999999999999999888776666666555444 334443 688999999999999999999999999999
Q ss_pred EeCCCCCcH----HHHHHHHHHH-HcCCCEEEEEEcccCCcchhHH-HHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMP----QTREAIAHAK-ISGVPLIVAINKIDKLDINLDR-IKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~----qt~e~i~~~~-~~~vpiIvviNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++.... .|...+.... ..++|+++|+||+|+....... ....+. ..+ .++++++||++|.||+
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------~~~--~~~~~e~Sak~g~gi~ 153 (166)
T d1ctqa_ 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA------RSY--GIPYIETSAKTRQGVE 153 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHH------HHH--TCCEEECCTTTCTTHH
T ss_pred ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHH------HHh--CCeEEEEcCCCCcCHH
Confidence 999984332 2333322222 3468999999999986533221 111121 122 2589999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
++|+.|+..
T Consensus 154 e~f~~i~~~ 162 (166)
T d1ctqa_ 154 DAFYTLVRE 162 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999754
|
| >d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.73 E-value=9.2e-19 Score=167.94 Aligned_cols=96 Identities=18% Similarity=0.307 Sum_probs=87.3
Q ss_pred CCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEE
Q psy1758 1114 HKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL 1193 (1527)
Q Consensus 1114 p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIva 1193 (1527)
|.++.++||+++|||++||+|.|+++++||+||+|+.||+|++.. ...++.+++.++|.++++++++.|||||+
T Consensus 2 ~~~~~d~p~~a~Vfk~~~d~~~G~i~~~RV~sG~l~~g~~v~~~~------~~~~~~~~~~~~~~~~~~v~~~~aGdI~~ 75 (103)
T d2dy1a1 2 TERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEA------GQVRLPHLYVPMGKDLLEVEEAEAGFVLG 75 (103)
T ss_dssp HHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCTT------SCEEESSEEEEETTEEEEESCEETTCEEE
T ss_pred CCCCCCCCcEEEEEEEEecCCCCEEEEEEEeccccCCCCEEEEee------cccccceeeeeecCcceecCEecCCCEEE
Confidence 446778999999999999999999999999999999999997642 24689999999999999999999999999
Q ss_pred EecceecccCCeeeCCCCCCCC
Q psy1758 1194 ITGIEEICIGSTICDPSKPNGL 1215 (1527)
Q Consensus 1194 i~gl~~~~iGdTi~~~~~~~~l 1215 (1527)
|+|++++++|||||+.+.|+++
T Consensus 76 v~g~~~~~iGDTl~~~~~p~~~ 97 (103)
T d2dy1a1 76 VPKAEGLHRGMVLWQGEKPESE 97 (103)
T ss_dssp ESSCTTCCTTCEEESSSCCCGG
T ss_pred EeCCCCCccCCEEcCCCCcCcC
Confidence 9999999999999998887653
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=1.3e-17 Score=175.98 Aligned_cols=158 Identities=22% Similarity=0.247 Sum_probs=116.2
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc-----
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF----- 998 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df----- 998 (1527)
.|+++|++|||||||+++|++.. ....+...|.|.......+.+.++.+.++||||..+.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~---------------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 66 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK---------------KAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDII 66 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-----------------------------CCSEEEEEETTEEEEEEECTTTTSSGGGCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---------------cceecccCceeeccccccccccccccccccccceeeeecccc
Confidence 69999999999999999998642 1223344677887778888999999999999996442
Q ss_pred ----hHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 999 ----GGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 999 ----~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
...+..++..+|.+++++|+.++...++++++..+...++|+|+|+||+|+... ...++...+..++.
T Consensus 67 ~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~----~~~~~~~~~~~~~~---- 138 (171)
T d1mkya1 67 SQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE----FEREVKPELYSLGF---- 138 (171)
T ss_dssp CHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH----HHHHTHHHHGGGSS----
T ss_pred ccccccccccccccCcEEEEeecccccccccccccccccccccccccccchhhhhhhh----hhhHHHHHHHhcCC----
Confidence 234445578899999999999999999999999999999999999999998532 22233222222221
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCCC
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKD 1116 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~~ 1116 (1527)
.+++++||++|. |+++|+++|.+++|....
T Consensus 139 --~~~i~iSAk~g~----------gid~L~~~i~~~l~e~~~ 168 (171)
T d1mkya1 139 --GEPIPVSAEHNI----------NLDTMLETIIKKLEEKGL 168 (171)
T ss_dssp --CSCEECBTTTTB----------SHHHHHHHHHHHHHHTTC
T ss_pred --CCeEEEecCCCC----------CHHHHHHHHHHhCCCCCC
Confidence 246889999998 999999999999986543
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.73 E-value=1.8e-17 Score=174.61 Aligned_cols=151 Identities=19% Similarity=0.201 Sum_probs=108.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|....+...+.+++..++. ..+..++. .+.+|||||++.+..++...++.+|++++|+
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 83 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVF 83 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc-cccccccccccccccccccccchhhhhhhcccccceeEEEe
Confidence 48999999999999999999998887776666554443 34455554 6788999999999999999999999999999
Q ss_pred eCCCCCcHHHHHHH-HHH----HHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 148 AADDGVMPQTREAI-AHA----KISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 148 da~~g~~~qt~e~i-~~~----~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
|.++....+....| ..+ ...++|+++|+||+|+.+... .+....+. ..+ .++++++||++|.||+
T Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~------~~~--~~~~~e~Sak~g~gv~ 155 (168)
T d1u8za_ 84 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA------DQW--NVNYVETSAKTRANVD 155 (168)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH------HHH--TCEEEECCTTTCTTHH
T ss_pred eccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHH------HHc--CCeEEEEcCCCCcCHH
Confidence 99984433322222 222 235789999999999865321 11111111 122 2589999999999999
Q ss_pred HHHHHHHHH
Q psy1758 221 KLLENISLQ 229 (1527)
Q Consensus 221 eL~~~l~~~ 229 (1527)
++|+.|+..
T Consensus 156 e~f~~l~~~ 164 (168)
T d1u8za_ 156 KVFFDLMRE 164 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999754
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.8e-17 Score=174.82 Aligned_cols=150 Identities=19% Similarity=0.249 Sum_probs=108.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|....+...+.+++.... ......++. .+.+|||+|++.|...+..+++.+|++++|+
T Consensus 3 ~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~ 81 (171)
T d2erxa1 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 81 (171)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEEe
Confidence 5799999999999999999999888766666554333 334455555 5677999999999999999999999999999
Q ss_pred eCCCCC----cHHHHHHHHHHH--HcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 148 AADDGV----MPQTREAIAHAK--ISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 148 da~~g~----~~qt~e~i~~~~--~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
|+++.. ...|...+.... ..++|+++|+||+|+..... .+....+. ..+ .++++++||++|.||
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~------~~~--~~~~~e~Sak~~~~v 153 (171)
T d2erxa1 82 SITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA------RTW--KCAFMETSAKLNHNV 153 (171)
T ss_dssp ETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHH------HHH--TCEEEECBTTTTBSH
T ss_pred ecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHH------HHc--CCeEEEEcCCCCcCH
Confidence 999832 122333232222 35689999999999864321 11111221 122 258999999999999
Q ss_pred hHHHHHHHH
Q psy1758 220 NKLLENISL 228 (1527)
Q Consensus 220 ~eL~~~l~~ 228 (1527)
+++|+.|+.
T Consensus 154 ~e~f~~l~~ 162 (171)
T d2erxa1 154 KELFQELLN 162 (171)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999874
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=6.5e-18 Score=177.39 Aligned_cols=153 Identities=20% Similarity=0.162 Sum_probs=112.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|.+|+|||||+++|....+.....++++.+.....+..++. .+.+|||||++.|..++..+++.+|++++|+
T Consensus 3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T d1g16a_ 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVY 82 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEE
Confidence 47999999999999999999999988888888888888888877775 5678999999999999999999999999999
Q ss_pred eCCCCCcHHHHHHH----HHHHHcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 148 AADDGVMPQTREAI----AHAKISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 148 da~~g~~~qt~e~i----~~~~~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
|.++....+..+.+ ........|+++++||.|+..... .+....+.. .+ .++++++||++|.||+++
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~~v~e~ 154 (166)
T d1g16a_ 83 DITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK------EL--GIPFIESSAKNDDNVNEI 154 (166)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHH------HH--TCCEEECBTTTTBSHHHH
T ss_pred ECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHH------hc--CCeEEEECCCCCCCHHHH
Confidence 99984433333222 222234567899999999865322 111222211 22 258999999999999999
Q ss_pred HHHHHHHH
Q psy1758 223 LENISLQA 230 (1527)
Q Consensus 223 ~~~l~~~~ 230 (1527)
|+.|+.+.
T Consensus 155 f~~l~~~i 162 (166)
T d1g16a_ 155 FFTLAKLI 162 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998653
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.72 E-value=2.4e-18 Score=183.64 Aligned_cols=157 Identities=18% Similarity=0.156 Sum_probs=111.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+..+|+++|.+|||||||+++|....+.... + |...........+..+.+|||||++.|..++..++..+|++++|
T Consensus 15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~-~--t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v 91 (182)
T d1moza_ 15 NKELRILILGLDGAGKTTILYRLQIGEVVTTK-P--TIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFV 91 (182)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-S--STTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccc-c--ccceEEEEEeeCCEEEEEEecccccccchhHHhhhccceeEEEE
Confidence 45689999999999999999999877653221 2 22233455567888999999999999999999999999999999
Q ss_pred EeCCCCCcHH-HHHHHHHHH----HcCCCEEEEEEcccCCcc-hhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQ-TREAIAHAK----ISGVPLIVAINKIDKLDI-NLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~q-t~e~i~~~~----~~~vpiIvviNKiDl~~~-~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++..... ..+.+.... ..+.|++||+||+|+.+. +..++...+.... .....+++++|||++|+||+
T Consensus 92 ~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~----~~~~~~~~~e~SA~~g~gv~ 167 (182)
T d1moza_ 92 VDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVE----LKDRSWSIVASSAIKGEGIT 167 (182)
T ss_dssp EETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTT----CCSSCEEEEEEBGGGTBTHH
T ss_pred eeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHH----HhhCCCEEEEEECCCCCCHH
Confidence 9999865443 333343322 246899999999999764 2333333322111 11224689999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
++|++|....
T Consensus 168 e~~~~l~~~i 177 (182)
T d1moza_ 168 EGLDWLIDVI 177 (182)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999997654
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.5e-17 Score=177.99 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=112.0
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC------------eEEEEEeCCChhhHHHHHHhhc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH------------GSITFLDTPGHEAFTAMRARGA 137 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~------------~~i~~iDTPG~e~f~~~~~~~~ 137 (1527)
.+|+++|++|+|||||+++|.+..+.....++.+.++....+..++ ..+.+|||||+++|..++..++
T Consensus 6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~~ 85 (186)
T d2f7sa1 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFF 85 (186)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHHH
Confidence 5799999999999999999999888777766666666555554332 3688999999999999999999
Q ss_pred cccCEEEEEEeCCCCCcHHHHHHHHH-H----HHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEE
Q psy1758 138 KVTDIVVLVVAADDGVMPQTREAIAH-A----KISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFIS 210 (1527)
Q Consensus 138 ~~aD~~IlVvda~~g~~~qt~e~i~~-~----~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~ 210 (1527)
+.+|++|+|+|+++....+....|.. + ...+.|+++|+||+|+...... +....+. ..+ .+++++
T Consensus 86 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~------~~~--~~~~~e 157 (186)
T d2f7sa1 86 RDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA------DKY--GIPYFE 157 (186)
T ss_dssp TTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH------HHT--TCCEEE
T ss_pred hcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHH------HHc--CCEEEE
Confidence 99999999999988333222222221 1 1234679999999998653211 1111111 122 258999
Q ss_pred eeccCCCChhHHHHHHHHHH
Q psy1758 211 ISAKTGVGINKLLENISLQA 230 (1527)
Q Consensus 211 iSAktg~gI~eL~~~l~~~~ 230 (1527)
+||++|.||+++|+.|....
T Consensus 158 ~Sak~~~~i~e~f~~l~~~i 177 (186)
T d2f7sa1 158 TSAATGQNVEKAVETLLDLI 177 (186)
T ss_dssp EBTTTTBTHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998643
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.3e-17 Score=172.91 Aligned_cols=153 Identities=19% Similarity=0.206 Sum_probs=108.2
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++++|||||++++....+...+.++.. +.....+..++. .+.+|||+|++.|...+..+++.+|++++|
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv 83 (171)
T d2erya1 5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV 83 (171)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence 36899999999999999999999887666555433 444455556664 688999999999999999999999999999
Q ss_pred EeCCCCCcHH----HH-HHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 147 VAADDGVMPQ----TR-EAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 147 vda~~g~~~q----t~-e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
+|.++....+ |. +..........|+|+|+||+|+..... .+....+. ..+ .+++++|||++|.||
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~------~~~--~~~~~e~Sak~~~~i 155 (171)
T d2erya1 84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLA------RQL--KVTYMEASAKIRMNV 155 (171)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHH------HHT--TCEEEECBTTTTBSH
T ss_pred eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHH------HHc--CCEEEEEcCCCCcCH
Confidence 9999833222 22 222223345689999999999865311 11111121 122 258999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
+++|+.|+...
T Consensus 156 ~e~f~~l~~~i 166 (171)
T d2erya1 156 DQAFHELVRVI 166 (171)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999997653
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1e-17 Score=177.15 Aligned_cols=152 Identities=19% Similarity=0.140 Sum_probs=109.9
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||++++.+..+...+.++.+...........+. .+.+||++|++.|..++..+++.+|++|+|+
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~ 83 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 83 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEE
Confidence 47999999999999999999998887666666655555555555554 7889999999999999999999999999999
Q ss_pred eCCCCCc----HHHHHHHHHHHHcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVM----PQTREAIAHAKISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~----~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|.++... .++...+......++|++||+||+|+..... .+....+.. .+ .++++++||++|.||++
T Consensus 84 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~------~~--~~~~~e~Sa~tg~~V~e 155 (173)
T d2a5ja1 84 DITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAR------EH--GLIFMETSAKTACNVEE 155 (173)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HH--TCEEEEECTTTCTTHHH
T ss_pred eecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHH------Hc--CCEEEEecCCCCCCHHH
Confidence 9998322 2222223233335789999999999864221 111122211 11 25899999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|..++..
T Consensus 156 ~f~~i~~~ 163 (173)
T d2a5ja1 156 AFINTAKE 163 (173)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999764
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=1.7e-17 Score=172.94 Aligned_cols=147 Identities=21% Similarity=0.257 Sum_probs=111.0
Q ss_pred CCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCChh--------hHHHHHHhhccc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHE--------AFTAMRARGAKV 139 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e--------~f~~~~~~~~~~ 139 (1527)
+.+|+++|++|||||||+++|++.+. ..+..++++.+.....+...+..+.++||||.. ........++..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 80 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence 35899999999999999999998775 456778888888888888999999999999931 122334456789
Q ss_pred cCEEEEEEeCCCCCcHHHHHHHHHHH---HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 140 TDIVVLVVAADDGVMPQTREAIAHAK---ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 140 aD~~IlVvda~~g~~~qt~e~i~~~~---~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
+|++++++|+.+.......+.+.... ..++|+++|+||+|+.+... ...+. ...+++++||++|
T Consensus 81 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~------------~~~~~-~~~~~~~iSAk~~ 147 (161)
T d2gj8a1 81 ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL------------GMSEV-NGHALIRLSARTG 147 (161)
T ss_dssp CSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC------------EEEEE-TTEEEEECCTTTC
T ss_pred ccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHH------------HHHHh-CCCcEEEEECCCC
Confidence 99999999999865544444333222 24789999999999854211 11111 2358999999999
Q ss_pred CChhHHHHHHHH
Q psy1758 217 VGINKLLENISL 228 (1527)
Q Consensus 217 ~gI~eL~~~l~~ 228 (1527)
.||++|+++|..
T Consensus 148 ~gi~~L~~~l~~ 159 (161)
T d2gj8a1 148 EGVDVLRNHLKQ 159 (161)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 999999999964
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.1e-17 Score=177.63 Aligned_cols=154 Identities=21% Similarity=0.200 Sum_probs=117.0
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++|+|||||+++|.+..+.....++++.......+..++. .+.||||||++++..++..+++.+|++++|
T Consensus 7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v 86 (177)
T d1x3sa1 7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILV 86 (177)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEE
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 368999999999999999999999988887777777777777777665 688999999999999999999999999999
Q ss_pred EeCCCCCcHH-HHHHHHHHH----HcCCCEEEEEEcccCCcchhHHH-HHHHhhhcccccccCCCCcEEEeeccCCCChh
Q psy1758 147 VAADDGVMPQ-TREAIAHAK----ISGVPLIVAINKIDKLDINLDRI-KQDLISEQVIPEEYGGASPFISISAKTGVGIN 220 (1527)
Q Consensus 147 vda~~g~~~q-t~e~i~~~~----~~~vpiIvviNKiDl~~~~~~~~-~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~ 220 (1527)
+|+++....+ ...++..+. ....|+++++||.|......... ...+.. .+ .++++++||++|.||+
T Consensus 87 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~------~~--~~~~~e~Sa~tg~gv~ 158 (177)
T d1x3sa1 87 YDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR------KH--SMLFIEASAKTCDGVQ 158 (177)
T ss_dssp EETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH------HT--TCEEEECCTTTCTTHH
T ss_pred EECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHH------HC--CCEEEEEeCCCCCCHH
Confidence 9999833222 223333332 23467899999999865332211 111111 11 2589999999999999
Q ss_pred HHHHHHHHHH
Q psy1758 221 KLLENISLQA 230 (1527)
Q Consensus 221 eL~~~l~~~~ 230 (1527)
++|+.++...
T Consensus 159 e~f~~l~~~l 168 (177)
T d1x3sa1 159 CAFEELVEKI 168 (177)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999997543
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=9.9e-18 Score=176.69 Aligned_cols=151 Identities=19% Similarity=0.187 Sum_probs=115.1
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|....+...+.++++.++....+..++. .+.+|||+|++.+..++..+++.+|++++|+
T Consensus 4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 83 (170)
T d1ek0a_ 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVY 83 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEEE
Confidence 58999999999999999999999988777777777777777777765 7889999999999999999999999999999
Q ss_pred eCCCCCcHHHHHHH----HHHHHcCCCEEEEEEcccCCcchhH-----HHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 148 AADDGVMPQTREAI----AHAKISGVPLIVAINKIDKLDINLD-----RIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 148 da~~g~~~qt~e~i----~~~~~~~vpiIvviNKiDl~~~~~~-----~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
|.++.........+ ........|+++++||+|+.+.... .....+.. .+ .++++++||++|.|
T Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~------~~--~~~~~e~Sak~g~g 155 (170)
T d1ek0a_ 84 DVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAE------EK--GLLFFETSAKTGEN 155 (170)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH------HH--TCEEEECCTTTCTT
T ss_pred eCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHH------Hc--CCEEEEecCCCCcC
Confidence 99984433222222 2222345789999999998643111 11111111 12 25899999999999
Q ss_pred hhHHHHHHHH
Q psy1758 219 INKLLENISL 228 (1527)
Q Consensus 219 I~eL~~~l~~ 228 (1527)
|+++|+.|+.
T Consensus 156 V~e~F~~i~~ 165 (170)
T d1ek0a_ 156 VNDVFLGIGE 165 (170)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999999863
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.70 E-value=4.7e-17 Score=171.49 Aligned_cols=152 Identities=20% Similarity=0.283 Sum_probs=111.9
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|++++|||||++++.+..+...+.++..... ...+..++. .+.+|||+|++.+..++..+++.+|++++|
T Consensus 4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv 82 (169)
T d1x1ra1 4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV 82 (169)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence 36899999999999999999999888766666554433 333445554 678999999999999999999999999999
Q ss_pred EeCCCCCc----HHHHHHHH-HHHHcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCCC-C
Q psy1758 147 VAADDGVM----PQTREAIA-HAKISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTGV-G 218 (1527)
Q Consensus 147 vda~~g~~----~qt~e~i~-~~~~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~-g 218 (1527)
+|+++... ..|...+. .....++|+|+++||+|+...... +...++. ..+ .++++++||++|. |
T Consensus 83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~------~~~--~~~~~e~Sak~~~~n 154 (169)
T d1x1ra1 83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA------TKY--NIPYIETSAKDPPLN 154 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH------HHH--TCCEEEEBCSSSCBS
T ss_pred cccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHH------HHc--CCEEEEEcCCCCCcC
Confidence 99998332 23333332 223457899999999998764211 1111121 122 2589999999986 9
Q ss_pred hhHHHHHHHHH
Q psy1758 219 INKLLENISLQ 229 (1527)
Q Consensus 219 I~eL~~~l~~~ 229 (1527)
|+++|+.|+..
T Consensus 155 V~~~F~~l~~~ 165 (169)
T d1x1ra1 155 VDKTFHDLVRV 165 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999754
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=6.9e-17 Score=169.94 Aligned_cols=149 Identities=21% Similarity=0.223 Sum_probs=109.0
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++|+|||||+++|....+...+.|++..++.... ..++. .+.+|||+|++.|. .+..+++.+|++++|+
T Consensus 3 iKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~-~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~ 80 (168)
T d2atva1 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY 80 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEE-EETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccc-cccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence 68999999999999999999999888777777766654433 34443 68899999998885 5667889999999999
Q ss_pred eCCCCCcHHHHH----HHHH-HHHcCCCEEEEEEcccCCcch---hHHHHHHHhhhcccccccCCCCcEEEeeccCCC-C
Q psy1758 148 AADDGVMPQTRE----AIAH-AKISGVPLIVAINKIDKLDIN---LDRIKQDLISEQVIPEEYGGASPFISISAKTGV-G 218 (1527)
Q Consensus 148 da~~g~~~qt~e----~i~~-~~~~~vpiIvviNKiDl~~~~---~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~-g 218 (1527)
|+++.......+ .... ....+.|+++|+||+|+.... .++. ..+.. .+ .++++++||++|. |
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~-~~~a~------~~--~~~~~e~Saktg~gn 151 (168)
T d2atva1 81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEG-EKLAT------EL--ACAFYECSACTGEGN 151 (168)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHH-HHHHH------HH--TSEEEECCTTTCTTC
T ss_pred ccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHH-HHHHH------Hh--CCeEEEEccccCCcC
Confidence 999843332222 2222 223578999999999986431 1111 11211 22 2589999999998 5
Q ss_pred hhHHHHHHHHH
Q psy1758 219 INKLLENISLQ 229 (1527)
Q Consensus 219 I~eL~~~l~~~ 229 (1527)
|+++|..|+..
T Consensus 152 V~e~F~~l~~~ 162 (168)
T d2atva1 152 ITEIFYELCRE 162 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999754
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.70 E-value=3.6e-17 Score=173.99 Aligned_cols=152 Identities=22% Similarity=0.254 Sum_probs=104.3
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEE-EeCCeEEEEEeCCCh-------hhHHHHHHhhccccCE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNV-VTNHGSITFLDTPGH-------EAFTAMRARGAKVTDI 142 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~-~~~~~~i~~iDTPG~-------e~f~~~~~~~~~~aD~ 142 (1527)
.|+|+|++|||||||+|+|++.........+.|........ ...+.++++|||||. +.+.....+.+..+|+
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 82 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence 49999999999999999999887655444444444444333 345568999999993 2233445567789999
Q ss_pred EEEEEeCCCCCcHHHHHHHHHH-----HHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCC
Q psy1758 143 VVLVVAADDGVMPQTREAIAHA-----KISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGV 217 (1527)
Q Consensus 143 ~IlVvda~~g~~~qt~e~i~~~-----~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~ 217 (1527)
+++++|+..............+ ...+.|+++|+||+|+...+..+...+... ....++|++||++|+
T Consensus 83 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~--------~~~~~~~~iSA~tg~ 154 (180)
T d1udxa2 83 LLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA--------REGLAVLPVSALTGA 154 (180)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH--------TTTSCEEECCTTTCT
T ss_pred hhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHH--------hcCCeEEEEEcCCCC
Confidence 9999998765433222222221 234689999999999977433222111111 124589999999999
Q ss_pred ChhHHHHHHHHHH
Q psy1758 218 GINKLLENISLQA 230 (1527)
Q Consensus 218 gI~eL~~~l~~~~ 230 (1527)
||++|++.|....
T Consensus 155 gid~L~~~i~~~l 167 (180)
T d1udxa2 155 GLPALKEALHALV 167 (180)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999996543
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.70 E-value=2e-17 Score=172.13 Aligned_cols=148 Identities=23% Similarity=0.339 Sum_probs=115.7
Q ss_pred CEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCCh--------hhH-HHHHHhhccc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPGH--------EAF-TAMRARGAKV 139 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~--------e~f-~~~~~~~~~~ 139 (1527)
.+|+++|++|||||||+|+|++... ..+..+++|.......+...+..+.+|||||. +.+ .......+..
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 80 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence 3799999999999999999998764 56777888888888888899999999999993 222 2334455788
Q ss_pred cCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 140 TDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 140 aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
+|++++|+|++++...+.......+ ...++++++||+|+.+....+. +. ..++...+++++||++|.||
T Consensus 81 ad~ii~v~d~~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~~~~~~~---~~------~~~~~~~~~~~vSA~~g~gi 149 (160)
T d1xzpa2 81 ADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINEEE---IK------NKLGTDRHMVKISALKGEGL 149 (160)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCHHH---HH------HHHTCSTTEEEEEGGGTCCH
T ss_pred CCEEEEEEeCCCCcchhhhhhhhhc--ccccceeeeeeccccchhhhHH---HH------HHhCCCCcEEEEECCCCCCH
Confidence 9999999999999888877766543 4678999999999976432211 11 11233468999999999999
Q ss_pred hHHHHHHHH
Q psy1758 220 NKLLENISL 228 (1527)
Q Consensus 220 ~eL~~~l~~ 228 (1527)
++|+++|..
T Consensus 150 ~~L~~~I~k 158 (160)
T d1xzpa2 150 EKLEESIYR 158 (160)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999864
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=4.3e-17 Score=174.12 Aligned_cols=153 Identities=21% Similarity=0.251 Sum_probs=113.1
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
++|+++|.+|||||||+++|.+..+...+.+++..+.....+...+. .+.+|||||++.+..++...+..+|++++|+
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 82 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF 82 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence 47999999999999999999999887777666666665555555544 7888999999999999999999999999999
Q ss_pred eCCCCCc----HHHHHHHHHHH----HcCCCEEEEEEcccCCcchhHH-HHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 148 AADDGVM----PQTREAIAHAK----ISGVPLIVAINKIDKLDINLDR-IKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 148 da~~g~~----~qt~e~i~~~~----~~~vpiIvviNKiDl~~~~~~~-~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
|.++... ..|++.+.... ..++|+++|+||+|+.+..... ....+... ...+++++|||++|.|
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~e~Sak~~~g 155 (184)
T d1vg8a_ 83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS-------KNNIPYFETSAKEAIN 155 (184)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH-------TTSCCEEECBTTTTBS
T ss_pred cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHH-------hcCCeEEEEcCCCCcC
Confidence 9987332 22332222221 2368999999999986532211 11111111 1236899999999999
Q ss_pred hhHHHHHHHHH
Q psy1758 219 INKLLENISLQ 229 (1527)
Q Consensus 219 I~eL~~~l~~~ 229 (1527)
|+++|++|+..
T Consensus 156 I~e~f~~l~~~ 166 (184)
T d1vg8a_ 156 VEQAFQTIARN 166 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999754
|
| >d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor 2 (eEF-2) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=1.5e-17 Score=163.43 Aligned_cols=79 Identities=22% Similarity=0.281 Sum_probs=74.3
Q ss_pred eeeEEEEEEecCcchHHHHHHHhccCCeEeeeeecC-CcEEEEEEEechhhhcChHHHHccccceeEEEEeEecceeecc
Q psy1758 1317 EPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINE-KERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 1395 (1527)
Q Consensus 1317 EP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~-~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~Y~~~~ 1395 (1527)
|||+.++|.+|++|+|.||++|++|||++++|+... +++++|.|.+|+++++||+++|+++|+|+|+|+++|+||++++
T Consensus 1 EPi~~v~I~~p~e~~G~V~~~l~~rRG~i~~~~~~~~~~~~~i~a~iP~~e~~gf~~~Lrs~T~G~a~~~~~f~~y~~v~ 80 (117)
T d1n0ua5 1 EPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLG 80 (117)
T ss_dssp EEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECC
T ss_pred CCEEEEEEEECHHHHHHHHHHHHHcCCeEeeeeecCCCceEEEEEECCchhhcCHHHHHHhhCCCCceEEEEeCChhhcc
Confidence 899999999999999999999999999999998753 4567899999999999999999999999999999999999998
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2.1e-16 Score=167.03 Aligned_cols=153 Identities=19% Similarity=0.241 Sum_probs=111.1
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|.+|+|||||+++|....+...+.+++........+...+. .+.+|||+|+..+...+..++..+|++++|+
T Consensus 7 ~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~ 86 (174)
T d1wmsa_ 7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTF 86 (174)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEEEE
Confidence 47999999999999999999998887776666666665666666665 6679999999999999999999999999999
Q ss_pred eCCCCCc----HHHHHHHHHHH----HcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCCCC
Q psy1758 148 AADDGVM----PQTREAIAHAK----ISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVG 218 (1527)
Q Consensus 148 da~~g~~----~qt~e~i~~~~----~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~g 218 (1527)
|.++... ..|.+.+.... ..++|+++|+||+|+.+.... +..+.+.. + ....+++++||++|.|
T Consensus 87 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~------~-~~~~~~~e~Sak~~~g 159 (174)
T d1wmsa_ 87 SVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR------D-NGDYPYFETSAKDATN 159 (174)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH------H-TTCCCEEECCTTTCTT
T ss_pred eeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHH------H-cCCCeEEEEcCCCCcC
Confidence 9997332 22333333222 236899999999998652211 11111211 1 1235899999999999
Q ss_pred hhHHHHHHHHH
Q psy1758 219 INKLLENISLQ 229 (1527)
Q Consensus 219 I~eL~~~l~~~ 229 (1527)
|+++|+.|+..
T Consensus 160 I~e~f~~l~~~ 170 (174)
T d1wmsa_ 160 VAAAFEEAVRR 170 (174)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998754
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.69 E-value=1.7e-16 Score=170.97 Aligned_cols=155 Identities=20% Similarity=0.273 Sum_probs=108.5
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc--ccccCCceeEEEEEEEEEeCCeEEEEEeCCC-------------hhhHHHH
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV--VFSEAGGITQHIGAYNVVTNHGSITFLDTPG-------------HEAFTAM 132 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~--~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG-------------~e~f~~~ 132 (1527)
.-|+|+|+|++|||||||+|+|++... ..+..+++|.+...... ...+.++|++| +..+...
T Consensus 22 ~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T d1svia_ 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccc---cccceEEEEEeeccccccccccchhhhHHhh
Confidence 346899999999999999999997653 45555666665544433 23566788877 2233444
Q ss_pred HHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch-hHHHHHHHhhhcccccccCCCCcEEEe
Q psy1758 133 RARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEYGGASPFISI 211 (1527)
Q Consensus 133 ~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~i 211 (1527)
...++..+|++++|+|++++...+..+++..+...++|+++|+||+|+.... ..+....+.+.. ......+++++
T Consensus 99 ~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~ 174 (195)
T d1svia_ 99 YITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTL----NIDPEDELILF 174 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHH----TCCTTSEEEEC
T ss_pred hhccccchhhhhhhhhccccccccccccccccccccCcceechhhccccCHHHHHHHHHHHHHHh----cccCCCCEEEE
Confidence 5566778899999999999999999999999999999999999999986532 222222222211 12344689999
Q ss_pred eccCCCChhHHHHHHHHH
Q psy1758 212 SAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 212 SAktg~gI~eL~~~l~~~ 229 (1527)
||++|.|+++|+++|...
T Consensus 175 SA~~~~gi~el~~~i~~~ 192 (195)
T d1svia_ 175 SSETKKGKDEAWGAIKKM 192 (195)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999999999999998643
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.68 E-value=4.5e-17 Score=173.36 Aligned_cols=158 Identities=13% Similarity=0.131 Sum_probs=110.5
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
.+|+++|++++|||||+++|....+...+.+++.. .....+..++. .+.+|||+|++.|..++..+++.+|++++|+
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF 81 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-cccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence 47999999999999999999999987776665543 33333444443 6789999999999999999999999999999
Q ss_pred eCCCCCcHHH-HHHHHH---HHHcCCCEEEEEEcccCCcchhHHHHHHHhhhc--------ccccccCCCCcEEEeeccC
Q psy1758 148 AADDGVMPQT-REAIAH---AKISGVPLIVAINKIDKLDINLDRIKQDLISEQ--------VIPEEYGGASPFISISAKT 215 (1527)
Q Consensus 148 da~~g~~~qt-~e~i~~---~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~--------~~~~~~~~~~~v~~iSAkt 215 (1527)
|+++...-+. .+.|.. ....++|+++|+||+|+................ ....++ +..+|++|||++
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~-~~~~y~E~SAk~ 160 (179)
T d1m7ba_ 82 DISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI-GAATYIECSALQ 160 (179)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH-TCSEEEECBTTT
T ss_pred ecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHh-CCCeEEEEeCCC
Confidence 9998433222 112221 223578999999999987533221111000000 001111 236899999999
Q ss_pred CC-ChhHHHHHHHHH
Q psy1758 216 GV-GINKLLENISLQ 229 (1527)
Q Consensus 216 g~-gI~eL~~~l~~~ 229 (1527)
|. ||+++|+.++..
T Consensus 161 ~~n~i~~~F~~~~~~ 175 (179)
T d1m7ba_ 161 SENSVRDIFHVATLA 175 (179)
T ss_dssp BHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHH
Confidence 98 599999988754
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=8.1e-17 Score=170.13 Aligned_cols=151 Identities=17% Similarity=0.228 Sum_probs=102.4
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccc-cCCceeEEEEEEEEEeCCe--EEEEEeCC---ChhhHHHHHHhhccccCEE
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFS-EAGGITQHIGAYNVVTNHG--SITFLDTP---GHEAFTAMRARGAKVTDIV 143 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~-~~~giT~~~~~~~~~~~~~--~i~~iDTP---G~e~f~~~~~~~~~~aD~~ 143 (1527)
.+|+++|++|+|||||+++|....+... ..+++..+.....+..++. .+.+||+| |+++| ++..+++.+|++
T Consensus 4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~~ 81 (172)
T d2g3ya1 4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAY 81 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--ccccccccccee
Confidence 5899999999999999999998775433 3334444444455556555 56778855 67777 566788999999
Q ss_pred EEEEeCCCCCcHHHHHH-HHHHH----HcCCCEEEEEEcccCCcchhH--HHHHHHhhhcccccccCCCCcEEEeeccCC
Q psy1758 144 VLVVAADDGVMPQTREA-IAHAK----ISGVPLIVAINKIDKLDINLD--RIKQDLISEQVIPEEYGGASPFISISAKTG 216 (1527)
Q Consensus 144 IlVvda~~g~~~qt~e~-i~~~~----~~~vpiIvviNKiDl~~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iSAktg 216 (1527)
|+|+|+++......... +..+. ..++|+++|+||+|+.+.... +....+. ..+ .++++++||++|
T Consensus 82 ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a------~~~--~~~~~e~Sak~g 153 (172)
T d2g3ya1 82 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACA------VVF--DCKFIETSAAVQ 153 (172)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHH------HHH--TCEEEECBTTTT
T ss_pred eeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHH------HHc--CCeEEEEeCCCC
Confidence 99999998433222222 22222 247899999999998653211 1111111 112 258999999999
Q ss_pred CChhHHHHHHHHHH
Q psy1758 217 VGINKLLENISLQA 230 (1527)
Q Consensus 217 ~gI~eL~~~l~~~~ 230 (1527)
.||+++|+.|+.+.
T Consensus 154 ~~i~~~f~~l~~~i 167 (172)
T d2g3ya1 154 HNVKELFEGIVRQV 167 (172)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999998654
|
| >d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor 2 (eEF-2), domain II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=1e-16 Score=161.48 Aligned_cols=102 Identities=19% Similarity=0.273 Sum_probs=89.2
Q ss_pred CCCCCCceeEEEeeeccccCce-EEEEEeecCccccCCEEEEecCCC--C---CcCcceeeeEEEeecCceeEeeeeecC
Q psy1758 1116 DNSNNPLQLQIISLEYSSYLGK-IGIGRILSGRIKSLQDVVIMNGPD--D---KPNKAKINQIRVFKGLDRVLVNEALSG 1189 (1527)
Q Consensus 1116 ~~~~~p~~~~V~~~~~d~~~G~-v~~grV~sG~lk~Gd~v~~~~~~~--g---~~~~~kV~~i~~~~g~~~~~v~~a~AG 1189 (1527)
+++++||+++|+++.++++.|+ +++||||||+|++||+|++++.+. + .....+|.+||.++|.+++++++|.||
T Consensus 29 cd~~~Pl~~~v~k~~~~~~~g~~~~~gRV~SGtl~~G~~v~vl~~~~~~~~~~~~~~~~i~~i~~~~g~~~~~v~~a~AG 108 (138)
T d1n0ua1 29 CDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAG 108 (138)
T ss_dssp TCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETT
T ss_pred cCCCCCEEEEEEeeccCCCCCEEEEEEEEEeceEcCCCEEEEecCCcccccccccceeeeeeeEEEecCceeeEeEEecC
Confidence 4778999999999999999999 599999999999999999986521 1 112368999999999999999999999
Q ss_pred CEEEEecceec-ccCCeeeCCCCCCCCCC
Q psy1758 1190 DIVLITGIEEI-CIGSTICDPSKPNGLPM 1217 (1527)
Q Consensus 1190 dIvai~gl~~~-~iGdTi~~~~~~~~l~~ 1217 (1527)
|||+|+|+++. ..|+|||+.+++.+||.
T Consensus 109 dIvai~Gl~~~i~k~~Tl~~~~~~~pl~~ 137 (138)
T d1n0ua1 109 NIIGLVGIDQFLLKTGTLTTSETAHNMKV 137 (138)
T ss_dssp CEEEEESCTTTCCSSEEEESCTTCCCBCC
T ss_pred cEEEEeccccceeccceecCCCCCccCCC
Confidence 99999999984 45999999999888764
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.67 E-value=1.3e-16 Score=165.26 Aligned_cols=153 Identities=18% Similarity=0.130 Sum_probs=109.1
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAA 149 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda 149 (1527)
.+|+++|++|+|||||+++|.+..+....... .............+.+||+||.+.+...+..++..++++++++|.
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~ 77 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTI---GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 77 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCS---SCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccce---eeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEe
Confidence 37999999999999999999988764332221 122334556677899999999999999999999999999999999
Q ss_pred CCCCcHHHH-HHHHHH----HHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHHH
Q psy1758 150 DDGVMPQTR-EAIAHA----KISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLLE 224 (1527)
Q Consensus 150 ~~g~~~qt~-e~i~~~----~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~~ 224 (1527)
++....... ..+..+ .....|+++++||+|+.+............... .....++++++||++|+||+++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~SAktg~gi~e~~~ 154 (160)
T d1r8sa_ 78 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS---LRHRNWYIQATCATSGDGLYEGLD 154 (160)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG---CSSCCEEEEECBTTTTBTHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHH---HhhCCCEEEEeECCCCCCHHHHHH
Confidence 884433222 222222 234678999999999986543322221111111 112346899999999999999999
Q ss_pred HHHH
Q psy1758 225 NISL 228 (1527)
Q Consensus 225 ~l~~ 228 (1527)
+|..
T Consensus 155 ~l~~ 158 (160)
T d1r8sa_ 155 WLSN 158 (160)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9974
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=9e-17 Score=171.07 Aligned_cols=155 Identities=25% Similarity=0.285 Sum_probs=111.9
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc-----
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF----- 998 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df----- 998 (1527)
.|+|+|++|+|||||+|+|+++.- ..+..+|+|.+. ..+.+.+ +.|+||||+...
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~----------------~~~~~~g~T~~~--~~~~~~~--~~ivDtpG~~~~~~~~~ 61 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKV----------------RRGKRPGVTRKI--IEIEWKN--HKIIDMPGFGFMMGLPK 61 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC----------------SSSSSTTCTTSC--EEEEETT--EEEEECCCBSCCTTSCH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc----------------eeeCCCCEeecc--ccccccc--ceecccCCceecccccc
Confidence 699999999999999999986411 123455677553 3455655 578999996321
Q ss_pred ----------hHHHHHHHHhcCEEEEEEeCC-----------CCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhh
Q psy1758 999 ----------GGEVERILSMVDNVLLLIDAV-----------EGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWV 1057 (1527)
Q Consensus 999 ----------~~ev~~~l~~aD~ailVVDa~-----------~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v 1057 (1527)
...+..+++.+|++++|+|+. .+...+...++..+.+.++|.|+|+||+|+... .+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~-~~~~ 140 (184)
T d2cxxa1 62 EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN-VQEV 140 (184)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC-HHHH
T ss_pred ccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhh-HHHH
Confidence 122334457899999999996 366778888888899999999999999998643 3444
Q ss_pred HHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1058 VDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1058 ~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.+.+.+.+. ........+++++||++|+ |+++|++.|.+.+|
T Consensus 141 ~~~~~~~~~---~~~~~~~~~~~~vSA~~g~----------gi~~L~~~i~~~l~ 182 (184)
T d2cxxa1 141 INFLAEKFE---VPLSEIDKVFIPISAKFGD----------NIERLKNRIFEVIR 182 (184)
T ss_dssp HHHHHHHHT---CCGGGHHHHEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HHHHHHHhc---ccccccCCeEEEEECCCCC----------CHHHHHHHHHHHcc
Confidence 444444332 1112223468899999998 99999999999887
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=3.8e-16 Score=162.33 Aligned_cols=150 Identities=23% Similarity=0.256 Sum_probs=113.3
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCC-----
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHAD----- 997 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~d----- 997 (1527)
.+|+++|++|+|||||+|+|++... .......|.|.......+.+.+..+.++||||+..
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~ 65 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDR---------------AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDL 65 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTB---------------CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc---------------eeeeccccccccceeEEEEeCCeeEEeccccccccCCccH
Confidence 3799999999999999999986521 11233456666666778889999999999999532
Q ss_pred ----chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 998 ----FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 998 ----f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
......+++..+|++++|+|++++...+...++... ...+.++++||+|..+.... +++...+ .
T Consensus 66 ~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~~~~~---~~~~~~~---~---- 133 (160)
T d1xzpa2 66 VERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINE---EEIKNKL---G---- 133 (160)
T ss_dssp CCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCCH---HHHHHHH---T----
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhhhhhhc--ccccceeeeeeccccchhhh---HHHHHHh---C----
Confidence 124566678899999999999999988887776654 46788899999999764322 2232222 2
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
.+.|++++||++|. |+++|+++|.+.
T Consensus 134 -~~~~~~~vSA~~g~----------gi~~L~~~I~ke 159 (160)
T d1xzpa2 134 -TDRHMVKISALKGE----------GLEKLEESIYRE 159 (160)
T ss_dssp -CSTTEEEEEGGGTC----------CHHHHHHHHHHH
T ss_pred -CCCcEEEEECCCCC----------CHHHHHHHHHhc
Confidence 23579999999998 999999998753
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.65 E-value=3.4e-16 Score=163.74 Aligned_cols=151 Identities=20% Similarity=0.190 Sum_probs=105.4
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCC--eEEEEEeCCChhhHHH-HHHhhccccCEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNH--GSITFLDTPGHEAFTA-MRARGAKVTDIVV 144 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~--~~i~~iDTPG~e~f~~-~~~~~~~~aD~~I 144 (1527)
|..+|+++|.+|+|||||+++|....+.....+.++............ ..+.+||++|+..+.. .+..+++.+|+++
T Consensus 1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 80 (165)
T d1z06a1 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (165)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence 346899999999999999999999887666665555444444444444 4788999999887765 4567889999999
Q ss_pred EEEeCCCCCcHHHH-HHHHHHH----HcCCCEEEEEEcccCCcchh--HHHHHHHhhhcccccccCCCCcEEEeeccCC-
Q psy1758 145 LVVAADDGVMPQTR-EAIAHAK----ISGVPLIVAINKIDKLDINL--DRIKQDLISEQVIPEEYGGASPFISISAKTG- 216 (1527)
Q Consensus 145 lVvda~~g~~~qt~-e~i~~~~----~~~vpiIvviNKiDl~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg- 216 (1527)
+|+|+++....+.. +++..+. ..++|++||+||+|+.+... .+....+. ..+ .++++++||++|
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~------~~~--~~~~~e~SAkt~~ 152 (165)
T d1z06a1 81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA------DTH--SMPLFETSAKNPN 152 (165)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH------HHT--TCCEEECCSSSGG
T ss_pred EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHH------HHC--CCEEEEEecccCC
Confidence 99999984322222 2222222 34789999999999865321 11111111 222 258999999974
Q ss_pred --CChhHHHHHH
Q psy1758 217 --VGINKLLENI 226 (1527)
Q Consensus 217 --~gI~eL~~~l 226 (1527)
.||+++|+.|
T Consensus 153 ~~~~V~e~F~~l 164 (165)
T d1z06a1 153 DNDHVEAIFMTL 164 (165)
T ss_dssp GGSCHHHHHHHH
T ss_pred cCcCHHHHHHHh
Confidence 5999999876
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=4.3e-16 Score=162.11 Aligned_cols=149 Identities=20% Similarity=0.208 Sum_probs=110.8
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH--
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG-- 1000 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~-- 1000 (1527)
.+|+++|++|+|||||+++|++.... ......|.|.......+.+.++.++++||||..+...
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~ 66 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAA---------------IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 66 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCS---------------CCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce---------------EeecccccccceEeeeeeccCceeeeccccccccccccc
Confidence 47999999999999999999865221 1223456666677778889999999999999876532
Q ss_pred ------HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc
Q psy1758 1001 ------EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 1001 ------ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~ 1071 (1527)
....++..+|++++++|+.+.........|....+ .++|+++|+||+|+...... .
T Consensus 67 ~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~---------------~ 131 (161)
T d2gj8a1 67 ERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG---------------M 131 (161)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE---------------E
T ss_pred hhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHH---------------H
Confidence 23345788999999999998765555555544433 27899999999997543211 0
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+....|++++||++|. |+++|++.|.+.+
T Consensus 132 ~~~~~~~~~~iSAk~~~----------gi~~L~~~l~~~l 161 (161)
T d2gj8a1 132 SEVNGHALIRLSARTGE----------GVDVLRNHLKQSM 161 (161)
T ss_dssp EEETTEEEEECCTTTCT----------THHHHHHHHHHHC
T ss_pred HHhCCCcEEEEECCCCC----------CHHHHHHHHHhhC
Confidence 11224689999999998 9999999998754
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.63 E-value=3.8e-16 Score=168.23 Aligned_cols=165 Identities=15% Similarity=0.106 Sum_probs=111.3
Q ss_pred cccccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCC
Q psy1758 914 LSDENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTP 993 (1527)
Q Consensus 914 lsq~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTP 993 (1527)
..++|...+++|||+|++|+|||||+|+|++...... .....+.|...... +..+.+.++|+|
T Consensus 15 ~~~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~--------------~~~~~~~t~~~~~~---~~~~~~~~~d~~ 77 (195)
T d1svia_ 15 PEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLAR--------------TSSKPGKTQTLNFY---IINDELHFVDVP 77 (195)
T ss_dssp GGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEEE---EETTTEEEEECC
T ss_pred hhHCCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEE--------------eecccceeeecccc---cccccceEEEEE
Confidence 4466667788999999999999999999986522110 11112233222211 223456678888
Q ss_pred CCCC-------------chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCC-ChhhhHH
Q psy1758 994 GHAD-------------FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNA-RPEWVVD 1059 (1527)
Q Consensus 994 Gh~d-------------f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a-~~~~v~~ 1059 (1527)
|..- +..........+|++++|+|+.+++.+++..+++.+...++|+++|+||+|+... +.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~~~~~~~~~~ 157 (195)
T d1svia_ 78 GYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAK 157 (195)
T ss_dssp CBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHH
T ss_pred eeccccccccccchhhhHHhhhhccccchhhhhhhhhccccccccccccccccccccCcceechhhccccCHHHHHHHHH
Confidence 7321 1222333345679999999999999999999999999999999999999998542 2333344
Q ss_pred HHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1060 ATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1060 ~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+++.+. ...+.|++++||++|+ |+++|+++|.+.+
T Consensus 158 ~~~~~l~------~~~~~~~~~~SA~~~~----------gi~el~~~i~~~l 193 (195)
T d1svia_ 158 VVRQTLN------IDPEDELILFSSETKK----------GKDEAWGAIKKMI 193 (195)
T ss_dssp HHHHHHT------CCTTSEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred HHHHHhc------ccCCCCEEEEeCCCCC----------CHHHHHHHHHHHh
Confidence 4444331 1124579999999998 9999999998765
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.62 E-value=1.3e-16 Score=170.24 Aligned_cols=152 Identities=21% Similarity=0.199 Sum_probs=103.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeC-CeEEEEEeCCChhh-------HHHHHHhhccccC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTN-HGSITFLDTPGHEA-------FTAMRARGAKVTD 141 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~-~~~i~~iDTPG~e~-------f~~~~~~~~~~aD 141 (1527)
+.|+|+|++|||||||+|+|++........+++|.+.......+. +..+++|||||+.. ........+..++
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~ 81 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 81 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence 359999999999999999999888766666677776666555554 45899999999522 1122334556788
Q ss_pred EEEEEEeCCCC--CcHHH----HHHHHHHH---HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEee
Q psy1758 142 IVVLVVAADDG--VMPQT----REAIAHAK---ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISIS 212 (1527)
Q Consensus 142 ~~IlVvda~~g--~~~qt----~e~i~~~~---~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iS 212 (1527)
.++++++.... ..... ........ ..++|+++|+||+|+.+.. .....+.. .+....|++++|
T Consensus 82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~--~~~~~~~~------~~~~~~~v~~iS 153 (185)
T d1lnza2 82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--ENLEAFKE------KLTDDYPVFPIS 153 (185)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--HHHHHHHH------HCCSCCCBCCCS
T ss_pred hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH--HHHHHHHH------HhccCCcEEEEE
Confidence 88888877652 22111 11111111 2367999999999997632 11122221 223456899999
Q ss_pred ccCCCChhHHHHHHHHH
Q psy1758 213 AKTGVGINKLLENISLQ 229 (1527)
Q Consensus 213 Aktg~gI~eL~~~l~~~ 229 (1527)
|++|.||++|++.|...
T Consensus 154 A~~g~Gi~~L~~~i~~~ 170 (185)
T d1lnza2 154 AVTREGLRELLFEVANQ 170 (185)
T ss_dssp SCCSSTTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999999654
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.62 E-value=7.7e-16 Score=163.55 Aligned_cols=155 Identities=21% Similarity=0.254 Sum_probs=105.6
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeE-EEEecCeEEEEEeCCCCC-----
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNC-SIEYNGTRINIIDTPGHA----- 996 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~-~~~~~~~~iniiDTPGh~----- 996 (1527)
.+|||+|++|+|||||+|+|++....+. ...+.|...... ....++.++.+|||||+.
T Consensus 2 ~~VaivG~~nvGKSTLin~L~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~ 65 (180)
T d1udxa2 2 ADVGLVGYPNAGKSSLLAAMTRAHPKIA----------------PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 65 (180)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEEC----------------CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcee----------------ccCCCceeeeeceeeecCCCeEEEcCCCeeecCchH
Confidence 4799999999999999999975422111 112223222222 233356789999999954
Q ss_pred --CchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHH-----HHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhc
Q psy1758 997 --DFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKA-----LKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLC 1069 (1527)
Q Consensus 997 --df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~-----~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~ 1069 (1527)
.....+.+.+..+|.+++++|+............... ...++|.|+|+||+|+... +..+++.+.+..
T Consensus 66 ~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~---~~~~~~~~~~~~-- 140 (180)
T d1udxa2 66 GKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALAR-- 140 (180)
T ss_dssp SCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhH---HHHHHHHHHHHh--
Confidence 3445677888999999999999875443332222222 2346899999999999653 233444443321
Q ss_pred ccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1070 ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1070 ~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
...|++++||++|+ |+++|++.|.+.++.
T Consensus 141 -----~~~~~~~iSA~tg~----------gid~L~~~i~~~l~~ 169 (180)
T d1udxa2 141 -----EGLAVLPVSALTGA----------GLPALKEALHALVRS 169 (180)
T ss_dssp -----TTSCEEECCTTTCT----------THHHHHHHHHHHHHT
T ss_pred -----cCCeEEEEEcCCCC----------CHHHHHHHHHHHHhh
Confidence 25689999999998 999999999887753
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=1e-16 Score=185.52 Aligned_cols=113 Identities=30% Similarity=0.420 Sum_probs=94.1
Q ss_pred EEEEEecCCCChhHHHHHHHcccc----------------ccccCCceeEEEEEEEEEe----------------CCeEE
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNV----------------VFSEAGGITQHIGAYNVVT----------------NHGSI 118 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~----------------~~~~~~giT~~~~~~~~~~----------------~~~~i 118 (1527)
+|+|+||+|||||||+++|..... ......|+|+......+.+ +++.+
T Consensus 19 NI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i 98 (341)
T d1n0ua2 19 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLI 98 (341)
T ss_dssp EEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceEE
Confidence 599999999999999999953221 1122347777766666544 34579
Q ss_pred EEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcc
Q psy1758 119 TFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDI 183 (1527)
Q Consensus 119 ~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~ 183 (1527)
+|+|||||.+|...+.++++.+|++|+|||+.+|+..||.++|+++...++|+++++||+|+...
T Consensus 99 nliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~~~ 163 (341)
T d1n0ua2 99 NLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALL 163 (341)
T ss_dssp EEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHH
T ss_pred EEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999998643
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=5.6e-16 Score=164.10 Aligned_cols=152 Identities=11% Similarity=0.146 Sum_probs=101.2
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe--EEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG--SITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~--~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
..+|+++|+++||||||++++....+.... +++. +.....+..++. .+.+|||+|++.+. +++.+|++|+|
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~-~t~~-~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilV 77 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTGSYQVLE-KTES-EQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFV 77 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHSCCCCCC-CSSC-EEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCcC-Cccc-eeEEEEeecCceEEEEEEeecccccccc-----cccccceeEEE
Confidence 478999999999999999999998875433 2222 222344555664 68899999998764 56789999999
Q ss_pred EeCCCCCcHHH----HHHHHHHH---HcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 147 VAADDGVMPQT----REAIAHAK---ISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 147 vda~~g~~~qt----~e~i~~~~---~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
||+++....+. .+.+..++ ..++|+++|+||.|+.......+....... ...++ ..++|++|||++|.||
T Consensus 78 fd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~--~~~~~-~~~~~~e~SAk~~~~v 154 (175)
T d2bmja1 78 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARA--LCADM-KRCSYYETCATYGLNV 154 (175)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHH--HHHTS-TTEEEEEEBTTTTBTH
T ss_pred eecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHH--HHHHh-CCCeEEEeCCCCCcCH
Confidence 99998433222 22222222 235689999999997543221111100000 00111 2358999999999999
Q ss_pred hHHHHHHHHHH
Q psy1758 220 NKLLENISLQA 230 (1527)
Q Consensus 220 ~eL~~~l~~~~ 230 (1527)
+++|..++...
T Consensus 155 ~~~F~~l~~~i 165 (175)
T d2bmja1 155 DRVFQEVAQKV 165 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988543
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.60 E-value=2.7e-15 Score=158.45 Aligned_cols=159 Identities=19% Similarity=0.196 Sum_probs=112.6
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
+++..+|+++|.+|+|||||+++|.... +. ......|+++ ..+.++++.+.++|+||+..|
T Consensus 13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~~--~~-------------~~~~~~~~~~----~~i~~~~~~~~i~d~~g~~~~ 73 (176)
T d1fzqa_ 13 PDQEVRILLLGLDNAGKTTLLKQLASED--IS-------------HITPTQGFNI----KSVQSQGFKLNVWDIGGQRKI 73 (176)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSC--CE-------------EEEEETTEEE----EEEEETTEEEEEEECSSCGGG
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhcCC--CC-------------cceeeeeeeE----EEeccCCeeEeEeeccccccc
Confidence 3455689999999999999999996531 11 0112234443 456778999999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
...+...+..+|++++|+|+++.... +....+.... ..++|+++|.||+|+.++.....+ .+.+.... ..
T Consensus 74 ~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~---~~~~~~~~--~~ 148 (176)
T d1fzqa_ 74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEI---AEGLNLHT--IR 148 (176)
T ss_dssp HHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHH---HHHTTGGG--CC
T ss_pred hhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHH---HHHHHHHH--HH
Confidence 99999999999999999999874332 2333333332 236899999999999876433222 22211111 11
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...++++++||++|. |++++|++|++.+
T Consensus 149 ~~~~~~~~~SA~tg~----------gv~e~~~~l~~~i 176 (176)
T d1fzqa_ 149 DRVWQIQSCSALTGE----------GVQDGMNWVCKNV 176 (176)
T ss_dssp SSCEEEEECCTTTCT----------THHHHHHHHHHTC
T ss_pred hcCCEEEEEeCCCCC----------CHHHHHHHHHhcC
Confidence 234678999999998 9999999998754
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.59 E-value=3.7e-15 Score=157.18 Aligned_cols=156 Identities=19% Similarity=0.162 Sum_probs=108.5
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
+..+|+++|.+|+|||||+++|.+..+....... ......+...+.++.+||++|++.+.......+..++++++|+
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~ 90 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTI---GSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV 90 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCS---CSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCCcccccc---ceeEEEEeecceEEEEeccccccccccchhhhhccceeeeeec
Confidence 4578999999999999999999998764332211 1223445567789999999999998888888999999999999
Q ss_pred eCCCCCcHHHHHH-HHH----HHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 148 AADDGVMPQTREA-IAH----AKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 148 da~~g~~~qt~e~-i~~----~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
|.++......... ... ....+.|+++|+||+|+............... .......++++++||++|+||+++
T Consensus 91 d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~---~~~~~~~~~~~~~Sa~tg~Gi~e~ 167 (177)
T d1zj6a1 91 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKL---TSIKDHQWHIQACCALTGEGLCQG 167 (177)
T ss_dssp ETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTG---GGCCSSCEEEEECBTTTTBTHHHH
T ss_pred ccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHH---HhhHhcCCEEEEEeCCCCCCHHHH
Confidence 9998554333221 111 12357899999999999765433222222111 111234568999999999999999
Q ss_pred HHHHHHH
Q psy1758 223 LENISLQ 229 (1527)
Q Consensus 223 ~~~l~~~ 229 (1527)
+++|..+
T Consensus 168 ~~~L~~~ 174 (177)
T d1zj6a1 168 LEWMMSR 174 (177)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999754
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.57 E-value=1.4e-14 Score=150.67 Aligned_cols=155 Identities=19% Similarity=0.133 Sum_probs=114.5
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
+..+|+++|.+|||||||+++|.+..+.... .|..........++..+.+||++|++.+.......+..++++++++
T Consensus 4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T d1upta_ 4 REMRILILGLDGAGKTTILYRLQVGEVVTTI---PTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV 80 (169)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCC---CCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCCccee---cccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhh
Confidence 5578999999999999999999998874322 2333444566678889999999999999999999999999999999
Q ss_pred eCCCCCcHHHHHHH-HH----HHHcCCCEEEEEEcccCCcchhH-HHHHHHhhhcccccccCCCCcEEEeeccCCCChhH
Q psy1758 148 AADDGVMPQTREAI-AH----AKISGVPLIVAINKIDKLDINLD-RIKQDLISEQVIPEEYGGASPFISISAKTGVGINK 221 (1527)
Q Consensus 148 da~~g~~~qt~e~i-~~----~~~~~vpiIvviNKiDl~~~~~~-~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~e 221 (1527)
|+.+.......... .. ......|+++++||+|+...... .....+.... .....++++++||++|+||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~----~~~~~~~~~~~SA~~g~gv~e 156 (169)
T d1upta_ 81 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPA----LKDRKWQIFKTSATKGTGLDE 156 (169)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGG----CTTSCEEEEECCTTTCTTHHH
T ss_pred hhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHH----HhcCCCEEEEEeCCCCCCHHH
Confidence 99875554443322 22 12345789999999999764332 2222221111 122346999999999999999
Q ss_pred HHHHHHHH
Q psy1758 222 LLENISLQ 229 (1527)
Q Consensus 222 L~~~l~~~ 229 (1527)
+|++|...
T Consensus 157 ~~~~l~~~ 164 (169)
T d1upta_ 157 AMEWLVET 164 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999754
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=7.9e-15 Score=151.67 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=111.1
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAA 149 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda 149 (1527)
.+|+++|++|+|||||+++|.+..+.. . +.|...........+....+|||+|+..+..........++.+++++|.
T Consensus 1 ~KI~liG~~nvGKSSLln~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (166)
T d2qtvb1 1 GKLLFLGLDNAGKTTLLHMLKNDRLAT-L--QPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA 77 (166)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCC-C--CCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCe-e--eceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence 379999999999999999999987642 1 2233444455667778999999999999999999999999999999999
Q ss_pred CCCCcHHHHH-HHHH----HHHcCCCEEEEEEcccCCcch-hHHHHHHHhhhccccccc---CCCCcEEEeeccCCCChh
Q psy1758 150 DDGVMPQTRE-AIAH----AKISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPEEY---GGASPFISISAKTGVGIN 220 (1527)
Q Consensus 150 ~~g~~~qt~e-~i~~----~~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~~~---~~~~~v~~iSAktg~gI~ 220 (1527)
++........ .+.. ....+.|+++++||+|+.... ..+....+.........+ ...+++++|||++|+||+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~ 157 (166)
T d2qtvb1 78 ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYL 157 (166)
T ss_dssp TCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHH
T ss_pred cchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHH
Confidence 9854433322 2222 223468899999999997642 333333332221111111 234579999999999999
Q ss_pred HHHHHHH
Q psy1758 221 KLLENIS 227 (1527)
Q Consensus 221 eL~~~l~ 227 (1527)
++|++|.
T Consensus 158 e~~~~l~ 164 (166)
T d2qtvb1 158 EAFQWLS 164 (166)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999985
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.57 E-value=3.3e-15 Score=156.14 Aligned_cols=155 Identities=16% Similarity=0.177 Sum_probs=111.7
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|++|+|||||+++|.... +... ...|+......+.+++..+++|||||+..|...+
T Consensus 3 ~ki~i~G~~~~GKTsLl~~l~~~~--~~~~----------------~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 64 (164)
T d1zd9a1 3 MELTLVGLQYSGKTTFVNVIASGQ--FNED----------------MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMW 64 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--CCCS----------------CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC--CCCc----------------ccccceeeeeeeeeeeEEEEEeeccccccccccc
Confidence 589999999999999999997541 1100 0123334445677889999999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHH----cCCccEEEEeccCCCCCC-hhhhHHHHHHHHhhhcccccccC
Q psy1758 1003 ERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK----LGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~----~glp~IvviNKiD~~~a~-~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
...+..+|++++|+|+++.. +......+..+.. .++|+++|.||+|+.++. ..++.+++ ..- ......
T Consensus 65 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~----~~~--~~~~~~ 138 (164)
T d1zd9a1 65 ERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKM----NLS--AIQDRE 138 (164)
T ss_dssp HHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHT----TGG--GCCSSC
T ss_pred cccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHH----HHH--HHHhCC
Confidence 99999999999999998632 2233334443432 378999999999997653 22222222 111 112235
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
++++.+||++|. |++++|++|++++
T Consensus 139 ~~~~e~Sa~~g~----------gv~e~~~~l~~~~ 163 (164)
T d1zd9a1 139 ICCYSISCKEKD----------NIDITLQWLIQHS 163 (164)
T ss_dssp EEEEECCTTTCT----------THHHHHHHHHHTC
T ss_pred CEEEEEeCcCCc----------CHHHHHHHHHHcc
Confidence 689999999998 9999999999875
|
| >d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.56 E-value=2.7e-15 Score=135.17 Aligned_cols=77 Identities=19% Similarity=0.400 Sum_probs=71.1
Q ss_pred cCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHhcCcEE
Q psy1758 1220 IDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYEL 1299 (1527)
Q Consensus 1220 ~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrreg~ev 1299 (1527)
+|+|++++++.|.+. + +..+|.++|+++.++||||+|+.++++++ ++++|||||||+|+++|||++|+++
T Consensus 1 iP~Pv~~~ai~p~~~---~------d~~kl~~aL~~L~~eDPsl~v~~d~et~e-~vl~g~GelHLei~~~rL~~~~v~v 70 (77)
T d2dy1a4 1 LPDPNVPVALHPKGR---T------DEARLGEALRKLLEEDPSLKLERQEETGE-LLLWGHGELHLATAKERLQDYGVEV 70 (77)
T ss_dssp CCCCCEEEEEEESSH---H------HHHHHHHHHHHHHHHCTTSEEEECTTTCC-EEEEESSHHHHHHHHHHHHHTTCCE
T ss_pred CCCCceEEEEEECCH---H------HHHHHHHHHHHHHhhcCeEEEEEcCCchh-heEeccccchHHHHHHHHHHcCCcE
Confidence 578999999998653 1 45899999999999999999999999999 9999999999999999999889999
Q ss_pred EEecCee
Q psy1758 1300 SVSRPRV 1306 (1527)
Q Consensus 1300 ~vs~P~V 1306 (1527)
.+++|+|
T Consensus 71 ~~~~P~V 77 (77)
T d2dy1a4 71 EFSVPKV 77 (77)
T ss_dssp EEECCCC
T ss_pred EeeCCcC
Confidence 9999987
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.56 E-value=2.4e-15 Score=157.19 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=112.1
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|.+|+|||||+++|.... +. +.+.|+......+.++++.+.+|||||+..|....
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~~~--~~-----------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 63 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNGED--VD-----------------TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYW 63 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC--CS-----------------SCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTG
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC--CC-----------------cccceEeeeeeeccccccceeeeecCcchhhhhHH
Confidence 479999999999999999996431 10 12234444556778899999999999999888888
Q ss_pred HHHHHhcCEEEEEEeCCCC-CChhHHHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1003 ERILSMVDNVLLLIDAVEG-PMPQTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G-~~~qt~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
...+..+|++++|+|+++- ........|.... ..++|+++|.||+|+++....+ +....+.. . ......+
T Consensus 64 ~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~---~~~~~~~~-~-~~~~~~~ 138 (165)
T d1ksha_ 64 RNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCN---AIQEALEL-D-SIRSHHW 138 (165)
T ss_dssp GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH---HHHHHTTG-G-GCCSSCE
T ss_pred HhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHH---HHHHHHHh-h-hhhcCCC
Confidence 8889999999999998863 2233444444433 2578999999999997654322 22222211 1 1112356
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+++.+||++|. |+.+++++|++.+.
T Consensus 139 ~~~~~Sa~~g~----------gv~e~~~~l~~~i~ 163 (165)
T d1ksha_ 139 RIQGCSAVTGE----------DLLPGIDWLLDDIS 163 (165)
T ss_dssp EEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred EEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 79999999998 99999999988753
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.54 E-value=5.1e-15 Score=157.75 Aligned_cols=155 Identities=18% Similarity=0.184 Sum_probs=104.6
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe-cCeEEEEEeCCCCC-----
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY-NGTRINIIDTPGHA----- 996 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~iniiDTPGh~----- 996 (1527)
-+|||+|++|+|||||+|+|++....+. ..++.|.......+.+ ++..+.++||||+.
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~----------------~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~ 65 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIA----------------DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ 65 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEES----------------STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcee----------------cCCCceEeeeeceeEecCCcEEEEecCCCcccCchH
Confidence 3799999999999999999976522111 1245555555555555 45789999999952
Q ss_pred --CchHHHHHHHHhcCEEEEEEeCCCC--CChhHH----HHHHHHH---HcCCccEEEEeccCCCCCChhhhHHHHHHHH
Q psy1758 997 --DFGGEVERILSMVDNVLLLIDAVEG--PMPQTR----FVTRKAL---KLGFKPIVVVNKIDRSNARPEWVVDATFDLF 1065 (1527)
Q Consensus 997 --df~~ev~~~l~~aD~ailVVDa~~G--~~~qt~----~~~~~~~---~~glp~IvviNKiD~~~a~~~~v~~~~~~~~ 1065 (1527)
.....+.+.+..++.++.+++...- ...... ..+..+. ..++|.++|+||+|+.+. .+..+.+.+.+
T Consensus 66 ~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~--~~~~~~~~~~~ 143 (185)
T d1lnza2 66 GVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AENLEAFKEKL 143 (185)
T ss_dssp TTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH--HHHHHHHHHHh
Confidence 2334566777889999999987632 222111 1111111 135789999999999753 23333333322
Q ss_pred hhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1066 DKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1066 ~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
. ..+|++++||++|. |+++|++.|.+.++.
T Consensus 144 ---~-----~~~~v~~iSA~~g~----------Gi~~L~~~i~~~L~~ 173 (185)
T d1lnza2 144 ---T-----DDYPVFPISAVTRE----------GLRELLFEVANQLEN 173 (185)
T ss_dssp ---C-----SCCCBCCCSSCCSS----------TTHHHHHHHHHHHTS
T ss_pred ---c-----cCCcEEEEECCCCC----------CHHHHHHHHHHhhhh
Confidence 1 24689999999998 999999999999864
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=9.3e-15 Score=153.52 Aligned_cols=159 Identities=19% Similarity=0.174 Sum_probs=108.0
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
...+|+++|.+|+|||||+++|+.....- ......|.+............+.+++|||||+.+|..
T Consensus 4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~ 69 (169)
T d3raba_ 4 YMFKILIIGNSSVGKTSFLFRYADDSFTP--------------AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRT 69 (169)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS--------------SCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHH
T ss_pred eEEEEEEECCCCcCHHHHHHHHHcCCCCc--------------ccccccccceeeEEEEeecceEEEEEEECCCchhhHH
Confidence 45789999999999999999998642110 0112234444444444444457899999999999998
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
.....++.+|++|+|+|+++.... .....+..... ...|++++.||.|..+.+.- ..++..... ....
T Consensus 70 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v-~~~~~~~~~-------~~~~ 141 (169)
T d3raba_ 70 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVV-SSERGRQLA-------DHLG 141 (169)
T ss_dssp HHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCS-CHHHHHHHH-------HHHT
T ss_pred HHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeeccccccccc-chhhhHHHH-------HHcC
Confidence 888899999999999999874222 12233333333 24677788899998654310 011222211 1224
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+|++.+||++|. |++++|+.+++.+
T Consensus 142 ~~~~e~Sak~g~----------gv~e~f~~l~~~i 166 (169)
T d3raba_ 142 FEFFEASAKDNI----------NVKQTFERLVDVI 166 (169)
T ss_dssp CEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred CEEEEecCCCCc----------CHHHHHHHHHHHH
Confidence 689999999998 9999999998765
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=4.7e-14 Score=149.49 Aligned_cols=159 Identities=14% Similarity=0.130 Sum_probs=104.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCC-----------hhhHHHHHH
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPG-----------HEAFTAMRA 134 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG-----------~e~f~~~~~ 134 (1527)
...++|+++|++|||||||+|+|++... ......+++...........+......++++ +..+.....
T Consensus 14 ~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (188)
T d1puia_ 14 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYL 93 (188)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhhh
Confidence 4578899999999999999999988764 2333344444444444444454444444433 112222333
Q ss_pred hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHH-HHHHhhhcccccccCCCCcEEEeec
Q psy1758 135 RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRI-KQDLISEQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 135 ~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~-~~~l~~~~~~~~~~~~~~~v~~iSA 213 (1527)
......+.++.+.++..+...++.+.+........++++++||+|+.+...... ...+.+ ....+.+..+++++||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~---~l~~~~~~~~~i~vSA 170 (188)
T d1puia_ 94 EKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVRE---AVLAFNGDVQVETFSS 170 (188)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHH---HHGGGCSCEEEEECBT
T ss_pred hhhhheeEEEEeecccccchhHHHHHHHHhhhccccccchhhhhhccCHHHHHHHHHHHHH---HHHhhCCCCcEEEEeC
Confidence 445566778888888889999999999988889999999999999976432221 112111 2233455678999999
Q ss_pred cCCCChhHHHHHHHH
Q psy1758 214 KTGVGINKLLENISL 228 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~ 228 (1527)
++|.||++|++.|..
T Consensus 171 ~~g~Gid~L~~~i~~ 185 (188)
T d1puia_ 171 LKKQGVDKLRQKLDT 185 (188)
T ss_dssp TTTBSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999998854
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.51 E-value=1.2e-14 Score=154.57 Aligned_cols=159 Identities=14% Similarity=0.151 Sum_probs=109.0
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF 998 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df 998 (1527)
..+..+|+++|.+|+|||||+++|.... .. . ...|.......+.+++..+.+|||||+..|
T Consensus 14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~--~~-------------~----~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (182)
T d1moza_ 14 SNKELRILILGLDGAGKTTILYRLQIGE--VV-------------T----TKPTIGFNVETLSYKNLKLNVWDLGGQTSI 74 (182)
T ss_dssp CSSCEEEEEEEETTSSHHHHHHHTCCSE--EE-------------E----ECSSTTCCEEEEEETTEEEEEEEEC----C
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCC--CC-------------c----cccccceEEEEEeeCCEEEEEEeccccccc
Confidence 3456789999999999999999996431 00 0 111222334556778999999999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
.......+..+|++++|+|+++..... ....|..... .+.|+++|.||+|++++... +++...+.... ..
T Consensus 75 ~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~---~~i~~~~~~~~--~~ 149 (182)
T d1moza_ 75 RPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSA---SEVSKELNLVE--LK 149 (182)
T ss_dssp CTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCH---HHHHHHTTTTT--CC
T ss_pred chhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCH---HHHHHHHHHHH--Hh
Confidence 988888899999999999998865443 3344444332 36899999999999765322 22222221111 12
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...++++.+||++|. |+++++++|++.+
T Consensus 150 ~~~~~~~e~SA~~g~----------gv~e~~~~l~~~i 177 (182)
T d1moza_ 150 DRSWSIVASSAIKGE----------GITEGLDWLIDVI 177 (182)
T ss_dssp SSCEEEEEEBGGGTB----------THHHHHHHHHHHH
T ss_pred hCCCEEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 235679999999998 9999999998765
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.51 E-value=2.5e-14 Score=150.69 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=110.8
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|.+|+|||||+++|.... .. ....|.........+....+.+|||||+..+...
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~~~--~~-----------------~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 72 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKLGQ--SV-----------------TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 72 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTCCC--CE-----------------EEEEETTEEEEEEEETTEEEEEEEESCCGGGHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC--CC-----------------CccceeeeeEEEeeccceeeEEecCCCcchhhhH
Confidence 4679999999999999999997531 11 0112222334556778899999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
....++.+|++++|+|++..... .....|....+ ...|+++|.||+|++++... .++...+. +. ......
T Consensus 73 ~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~---~~i~~~~~-~~-~~~~~~ 147 (173)
T d1e0sa_ 73 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP---HEIQEKLG-LT-RIRDRN 147 (173)
T ss_dssp HGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH---HHHHHHTT-GG-GCCSSC
T ss_pred HHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccH---HHHHHHHH-HH-HHHhCC
Confidence 99999999999999999863222 23334444332 36899999999999765322 22222221 11 122235
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
++++.+||++|. |++++|++|.+++
T Consensus 148 ~~~~e~SA~tg~----------gv~e~~~~l~~~~ 172 (173)
T d1e0sa_ 148 WYVQPSCATSGD----------GLYEGLTWLTSNY 172 (173)
T ss_dssp EEEEECBTTTTB----------THHHHHHHHHHHC
T ss_pred CEEEEeeCCCCc----------CHHHHHHHHHHhc
Confidence 678999999998 9999999998875
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.51 E-value=1.1e-14 Score=153.90 Aligned_cols=159 Identities=16% Similarity=0.165 Sum_probs=106.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEE
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLV 146 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlV 146 (1527)
.+..+|+++|.+|||||||+++|.+..+.... + |.......+.+++..+.+||++|+..+..........++.++++
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-P--TLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFL 87 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------C--CCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-c--ccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeee
Confidence 46689999999999999999999988764322 1 22223344567788999999999999988888899999999999
Q ss_pred EeCCCCCcH-HHHHHHHHH----HHcCCCEEEEEEcccCCcch-hHHHHHHHhhhccccc--------ccCCCCcEEEee
Q psy1758 147 VAADDGVMP-QTREAIAHA----KISGVPLIVAINKIDKLDIN-LDRIKQDLISEQVIPE--------EYGGASPFISIS 212 (1527)
Q Consensus 147 vda~~g~~~-qt~e~i~~~----~~~~vpiIvviNKiDl~~~~-~~~~~~~l~~~~~~~~--------~~~~~~~v~~iS 212 (1527)
+|+++.... +....+..+ ...+.|+++++||.|+...- ...+...+........ .....+++++||
T Consensus 88 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (186)
T d1f6ba_ 88 VDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCS 167 (186)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECB
T ss_pred eeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEe
Confidence 999884332 222222222 23578999999999997643 3333332221111111 112245799999
Q ss_pred ccCCCChhHHHHHHHH
Q psy1758 213 AKTGVGINKLLENISL 228 (1527)
Q Consensus 213 Aktg~gI~eL~~~l~~ 228 (1527)
|++|+||+++|++|+.
T Consensus 168 A~tg~Gi~e~~~~l~~ 183 (186)
T d1f6ba_ 168 VLKRQGYGEGFRWMAQ 183 (186)
T ss_dssp TTTTBSHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999999974
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=5.6e-14 Score=148.40 Aligned_cols=153 Identities=20% Similarity=0.297 Sum_probs=106.1
Q ss_pred CEEEEEecCCCChhHHHHHHHccccc-cccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHH-----HH----hhccc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVV-FSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAM-----RA----RGAKV 139 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~-~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~-----~~----~~~~~ 139 (1527)
..|+++|++|||||||+|+|++.... .+..++++..........+...+.++|+||....... .. .....
T Consensus 6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (179)
T d1egaa1 6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD 85 (179)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhh
Confidence 46999999999999999999987753 4445555555555666677778888999984332221 11 12245
Q ss_pred cCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCCh
Q psy1758 140 TDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGI 219 (1527)
Q Consensus 140 aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI 219 (1527)
+|+++++.|+.+ ...+..+....+.....|.++|+||+|+.....+.. .... ..... .+..+++++||++|.|+
T Consensus 86 ~~~~l~~~d~~~-~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~~~~~~-~~~~---~~~~~-~~~~~~~~vSA~~g~gi 159 (179)
T d1egaa1 86 VELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLL-PHLQ---FLASQ-MNFLDIVPISAETGLNV 159 (179)
T ss_dssp EEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHH-HHHH---HHHTT-SCCSEEEECCTTTTTTH
T ss_pred cceeEEEEecCc-cchhHHHHHHHhhhccCceeeeeeeeeccchhhhhh-hHhh---hhhhh-cCCCCEEEEeCcCCCCH
Confidence 788888888775 445555666666777889999999999877533211 1111 01111 23468999999999999
Q ss_pred hHHHHHHHH
Q psy1758 220 NKLLENISL 228 (1527)
Q Consensus 220 ~eL~~~l~~ 228 (1527)
++|++.|..
T Consensus 160 ~~L~~~i~~ 168 (179)
T d1egaa1 160 DTIAAIVRK 168 (179)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999999853
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2.3e-14 Score=150.67 Aligned_cols=157 Identities=20% Similarity=0.169 Sum_probs=106.7
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe--cCeEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY--NGTRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~--~~~~iniiDTPGh~df 998 (1527)
.+.+|+++|.+|+|||||+++|+...... +..++++.......+.+ ..+++.+|||||+..|
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~ 67 (171)
T d2ew1a1 4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP----------------GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF 67 (171)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT----------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCC----------------cccccccceEEEEEEEECCEEEEEEEEECCCchhh
Confidence 45789999999999999999998542111 11122333333333444 3467899999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
.......++.+|++++|+|.++.. ......+|..+.+. +.|.++|.||+|+...+.. ..++....- ..
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v-~~~~~~~~~-------~~ 139 (171)
T d2ew1a1 68 RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREV-SQQRAEEFS-------EA 139 (171)
T ss_dssp HHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSS-CHHHHHHHH-------HH
T ss_pred HHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccch-hhhHHHHHH-------Hh
Confidence 988888899999999999988642 22334455555443 5778888999998643211 112222211 11
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..+|++++||++|. |++++|..++..+
T Consensus 140 ~~~~~~~~SAktg~----------gV~e~f~~l~~~l 166 (171)
T d2ew1a1 140 QDMYYLETSAKESD----------NVEKLFLDLACRL 166 (171)
T ss_dssp HTCCEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred CCCEEEEEccCCCC----------CHHHHHHHHHHHH
Confidence 24689999999998 9999988876543
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=3.7e-14 Score=148.29 Aligned_cols=159 Identities=16% Similarity=0.156 Sum_probs=107.2
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
.+.+|+++|++++|||||+++|+........ ....+.+.......+....+.+++|||||+.+|..
T Consensus 3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 68 (166)
T d1z0fa1 3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADC--------------PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA 68 (166)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSC--------------TTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCH
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcc--------------cccccccceeEEEEECCEEEEEEEeccCCchhHHH
Confidence 3568999999999999999999865211110 11122233333333333446899999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
.....++.+|++|+|+|.++...- .....+..+.. ...|.+++.||+|+...+.. ..++...... ...
T Consensus 69 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~-~~~~~~~~~~-------~~~ 140 (166)
T d1z0fa1 69 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDV-TYEEAKQFAE-------ENG 140 (166)
T ss_dssp HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS-CHHHHHHHHH-------HTT
T ss_pred HHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhccc-HHHHHHHHHH-------HcC
Confidence 999999999999999999873221 22333444433 35677888999998543311 1222222221 234
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+|++.+||++|. |++++|+.+++.+
T Consensus 141 ~~~~e~Saktg~----------~v~e~f~~i~~~i 165 (166)
T d1z0fa1 141 LLFLEASAKTGE----------NVEDAFLEAAKKI 165 (166)
T ss_dssp CEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred CEEEEEeCCCCC----------CHHHHHHHHHHHh
Confidence 689999999998 9999999988753
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=3.3e-14 Score=149.09 Aligned_cols=156 Identities=17% Similarity=0.122 Sum_probs=94.6
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
+.+|+++|.+|+|||||++++.... ..... ...+.+ ..+...+....+.+.+|||||+.+|...
T Consensus 1 ifKi~lvG~~~vGKTsLi~~~~~~~--~~~~~-------------~~~~~~-~~~~i~~~~~~~~l~i~D~~g~e~~~~~ 64 (168)
T d2gjsa1 1 VYKVLLLGAPGVGKSALARIFGGVE--DGPEA-------------EAAGHT-YDRSIVVDGEEASLMVYDIWEQDGGRWL 64 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHTC------------------------CEE-EEEEEEETTEEEEEEEEECC-------C
T ss_pred CeEEEEECCCCcCHHHHHHHHhCCc--cCCcC-------------Ceeeee-ecceeeccccccceeeeeccccccccee
Confidence 3589999999999999999997541 11000 011111 1122222223468899999999999988
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
....++.+|++|+|+|.++....+.. .++..+.. ..+|+++|.||+|+...+.- ...+.+..- ...+
T Consensus 65 ~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v-~~~~~~~~~-------~~~~ 136 (168)
T d2gjsa1 65 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREV-SVDEGRACA-------VVFD 136 (168)
T ss_dssp HHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCS-CHHHHHHHH-------HHHT
T ss_pred cccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhhcch-hHHHHHHHH-------HhcC
Confidence 88999999999999999874222222 23333332 35788999999998653210 111222211 1124
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+|++.+||++|. |++.+|+.|++.+
T Consensus 137 ~~~~e~Sak~~~----------~v~~~f~~l~~~i 161 (168)
T d2gjsa1 137 CKFIETSAALHH----------NVQALFEGVVRQI 161 (168)
T ss_dssp SEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCc----------CHHHHHHHHHHHH
Confidence 579999999998 9999999988754
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.49 E-value=2.1e-14 Score=151.40 Aligned_cols=161 Identities=17% Similarity=0.179 Sum_probs=82.9
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
+.+.+|+++|++++|||||+++|+... +. + ......|.+.......+....+.++||||||+..|.
T Consensus 4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~--~~----------~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~ 69 (173)
T d2fu5c1 4 DYLFKLLLIGDSGVGKTCVLFRFSEDA--FN----------S--TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 69 (173)
T ss_dssp SEEEEEEEECCCCC------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------
T ss_pred cEEEEEEEECCCCcCHHHHHHHHHhCC--CC----------C--ccCccccceEEEEEEEECCEEEEEEEEECCCchhhH
Confidence 456789999999999999999997541 11 0 111222333333333332234678899999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHH---HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKAL---KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~---~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
......++.+|++|+|+|+++...-.. ...+.... ..+.|+++|.||.|....+... .++..... ...
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~-~~~~~~~~-------~~~ 141 (173)
T d2fu5c1 70 TITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVS-KERGEKLA-------LDY 141 (173)
T ss_dssp --CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSC-HHHHHHHH-------HHH
T ss_pred HHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccH-HHHHHHHH-------Hhc
Confidence 888888999999999999987322111 12223332 2457889999999987643221 12222211 122
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.+|++.+||++|. |++++|+.|++.+.
T Consensus 142 ~~~~~e~Sa~~g~----------gv~e~f~~l~~~i~ 168 (173)
T d2fu5c1 142 GIKFMETSAKANI----------NVENAFFTLARDIK 168 (173)
T ss_dssp TCEEEECCC---C----------CHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 4679999999998 99999999987663
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=2.5e-14 Score=150.82 Aligned_cols=159 Identities=19% Similarity=0.187 Sum_probs=107.6
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
...+|+++|++|+|||||+++|+.....-. ..+..+.+..............+.+|||||+.+|..
T Consensus 4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 69 (174)
T d2bmea1 4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDD--------------SNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 69 (174)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTT--------------CCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHH
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCcc--------------cccccccceeeEEEEecCcceeEEEEECCCchhhhh
Confidence 346899999999999999999985421100 011223343333334444456899999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
.....++.+|++++|+|.+.....+. ...+..+.. .++|+++|.||+|+...... ....... +. ....
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~-~~------~~~~ 141 (174)
T d2bmea1 70 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREV-TFLEASR-FA------QENE 141 (174)
T ss_dssp HHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS-CHHHHHH-HH------HHTT
T ss_pred hHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhch-hhhHHHH-HH------HhCC
Confidence 99999999999999999987432222 223333332 36899999999998543211 1111111 11 1235
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+|++.+||++|. |++++|+.+++.+
T Consensus 142 ~~~~e~Sak~~~----------gi~e~f~~l~~~i 166 (174)
T d2bmea1 142 LMFLETSALTGE----------NVEEAFVQCARKI 166 (174)
T ss_dssp CEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred CEEEEeeCCCCc----------CHHHHHHHHHHHH
Confidence 689999999998 9999998887754
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.5e-14 Score=149.69 Aligned_cols=160 Identities=18% Similarity=0.153 Sum_probs=107.9
Q ss_pred cceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCC
Q psy1758 918 NIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGH 995 (1527)
Q Consensus 918 ~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh 995 (1527)
++.+..+|+++|.+++|||||+++|+.....-.... ++.+.....+.+++ +.+.+|||||+
T Consensus 2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~-----------------t~~~~~~~~~~~~~~~~~l~~~d~~g~ 64 (173)
T d2fn4a1 2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDP-----------------TIEDSYTKICSVDGIPARLDILDTAGQ 64 (173)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCT-----------------TCCEEEEEEEEETTEEEEEEEEECCCT
T ss_pred CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCccccc-----------------ccccceeeEeccCCeeeeeeccccccc
Confidence 455677899999999999999999986422111000 01111112233443 57888999999
Q ss_pred CCchHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcc
Q psy1758 996 ADFGGEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA 1070 (1527)
Q Consensus 996 ~df~~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~ 1070 (1527)
.+|.......++.+|++|+|+|.++...... ..++..+.+ .++|.++|.||+|+...+.. ..++.....
T Consensus 65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~-~~~~~~~~~----- 138 (173)
T d2fn4a1 65 EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQV-PRSEASAFG----- 138 (173)
T ss_dssp TTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCS-CHHHHHHHH-----
T ss_pred cccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhcccc-chhhhhHHH-----
Confidence 9999999999999999999999987432222 233333322 46799999999998643211 112222211
Q ss_pred cccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1071 TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1071 ~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...++|++.+||++|. |++++|+.+++.+.
T Consensus 139 --~~~~~~~~e~Sak~g~----------gv~e~f~~l~~~i~ 168 (173)
T d2fn4a1 139 --ASHHVAYFEASAKLRL----------NVDEAFEQLVRAVR 168 (173)
T ss_dssp --HHTTCEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred --HhcCCEEEEEeCCCCc----------CHHHHHHHHHHHHH
Confidence 1234689999999998 99999999988653
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.48 E-value=7.4e-14 Score=151.45 Aligned_cols=112 Identities=26% Similarity=0.279 Sum_probs=80.7
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEe-CCeEEEEEeCCChhhHH-HHHHhhccccCEEEEEEe
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVT-NHGSITFLDTPGHEAFT-AMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~-~~~~i~~iDTPG~e~f~-~~~~~~~~~aD~~IlVvd 148 (1527)
+|+++|++|||||||+++|.+..+.... ++++.+.....+.. .+..+.+|||||++.+. ..+..++..+|++++|+|
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D 80 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD 80 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence 6999999999999999999998875443 45555554444332 34589999999999986 456677799999999999
Q ss_pred CCCCCc--HHHHHHHH-H---HH--HcCCCEEEEEEcccCCcc
Q psy1758 149 ADDGVM--PQTREAIA-H---AK--ISGVPLIVAINKIDKLDI 183 (1527)
Q Consensus 149 a~~g~~--~qt~e~i~-~---~~--~~~vpiIvviNKiDl~~~ 183 (1527)
+++... ....+.+. . .. ..++|++||+||+|++.+
T Consensus 81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a 123 (207)
T d2fh5b1 81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 123 (207)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence 987332 11122221 1 11 235789999999999864
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.47 E-value=4.6e-14 Score=147.26 Aligned_cols=157 Identities=17% Similarity=0.203 Sum_probs=105.0
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|.+|+|||||+++|+.....-. ....-|.+............+.+.+|||||+.++....
T Consensus 3 iKv~liG~~~vGKSsLi~rl~~~~~~~~--------------~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~ 68 (164)
T d1z2aa1 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKD--------------YKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT 68 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCC--------------SSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcc--------------cccccccccceeeeeecCceeeeeeeccCCccchhhhh
Confidence 4799999999999999999986421100 01112222222222222234678999999999999888
Q ss_pred HHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH--cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK--LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~--~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
...++.+|++++|+|.++...-+ ...++..+.+ .++|.++|.||+|+...+.- ..++++... ...++|+
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v-~~~~~~~~~-------~~~~~~~ 140 (164)
T d1z2aa1 69 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCI-KNEEAEGLA-------KRLKLRF 140 (164)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSS-CHHHHHHHH-------HHHTCEE
T ss_pred hhhhccCceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCcccceee-eehhhHHHH-------HHcCCEE
Confidence 88999999999999998743222 2233344433 47899999999998643210 112222211 1234689
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+++||++|. |++++|+.|++.+
T Consensus 141 ~e~Sak~g~----------~v~e~f~~l~~~~ 162 (164)
T d1z2aa1 141 YRTSVKEDL----------NVSEVFKYLAEKH 162 (164)
T ss_dssp EECBTTTTB----------SSHHHHHHHHHHH
T ss_pred EEeccCCCc----------CHHHHHHHHHHHH
Confidence 999999998 9999999998754
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=3e-14 Score=153.14 Aligned_cols=161 Identities=17% Similarity=0.229 Sum_probs=109.5
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
+.+.+|+|+|.+++|||||+++|+... +.. ......|.+.......+....+.++||||||+.+|.
T Consensus 4 ~~~~KivvvG~~~vGKTsli~~l~~~~--~~~------------~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~ 69 (194)
T d2bcgy1 4 DYLFKLLLIGNSGVGKSCLLLRFSDDT--YTN------------DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFR 69 (194)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCC--CCT------------TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTT
T ss_pred CEEEEEEEECCCCcCHHHHHHHHhhCC--CCC------------CcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhH
Confidence 345789999999999999999998542 110 011123344444333344445789999999999998
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
..+..+++.+|++|+|+|++.....+. ...+..+.+ .++|+++|.||+|+.+.+.-. .++...... ..
T Consensus 70 ~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~-~~~~~~~~~-------~~ 141 (194)
T d2bcgy1 70 TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVE-YDVAKEFAD-------AN 141 (194)
T ss_dssp CCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC-HHHHHHHHH-------HT
T ss_pred HHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchh-HHHHhhhhh-------cc
Confidence 888888999999999999986432222 223333332 367889999999987643211 112222111 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
.++++++||++|. |++++|+.+++.++
T Consensus 142 ~~~~~e~SAk~g~----------gi~e~f~~l~~~i~ 168 (194)
T d2bcgy1 142 KMPFLETSALDST----------NVEDAFLTMARQIK 168 (194)
T ss_dssp TCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred CcceEEEecCcCc----------cHHHHHHHHHHHHH
Confidence 4578999999998 99999999987764
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=2.3e-14 Score=153.11 Aligned_cols=154 Identities=10% Similarity=0.099 Sum_probs=106.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
|..+|+++|..|||||||+++|....+.. + .+....+.....++.+|||+|++.|..++..+++.++++++|+
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t-----~--~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~ 73 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHEAG-----T--GIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCV 73 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHSCC-----C--SEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCC-----c--cEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEE
Confidence 34689999999999999999998765532 2 2334567788889999999999999999999999999999999
Q ss_pred eCCCCCc-----------HHHHHHHHHH----HHcCCCEEEEEEcccCCcch------------------hHHHHHHHhh
Q psy1758 148 AADDGVM-----------PQTREAIAHA----KISGVPLIVAINKIDKLDIN------------------LDRIKQDLIS 194 (1527)
Q Consensus 148 da~~g~~-----------~qt~e~i~~~----~~~~vpiIvviNKiDl~~~~------------------~~~~~~~l~~ 194 (1527)
|.++... ......|... ...+.|+++++||+|+.... ..+.......
T Consensus 74 d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (195)
T d1svsa1 74 ALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC 153 (195)
T ss_dssp EGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHH
T ss_pred eecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHH
Confidence 9887221 1122222222 23468999999999974311 1111111111
Q ss_pred h--cccccccCCCCcEEEeeccCCCChhHHHHHHHH
Q psy1758 195 E--QVIPEEYGGASPFISISAKTGVGINKLLENISL 228 (1527)
Q Consensus 195 ~--~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~ 228 (1527)
. ..........++++++||++|.||+++|+.+..
T Consensus 154 ~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~ 189 (195)
T d1svsa1 154 QFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD 189 (195)
T ss_dssp HHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHH
Confidence 0 010111123457889999999999999998854
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=4.4e-14 Score=149.10 Aligned_cols=157 Identities=22% Similarity=0.235 Sum_probs=107.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC--eEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG--TRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~iniiDTPGh~df 998 (1527)
...+|+++|.+|+|||||+++++...... +..++++.......+.+++ ..+.|+||||+.+|
T Consensus 3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~ 66 (175)
T d2f9la1 3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL----------------ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 66 (175)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCCSCEEEEEEEEETTEEEEEEEEECSSGGGT
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCC----------------cccccccceeeeEEEEECCEEEEEEecccCCcHHH
Confidence 45689999999999999999998642111 1112222333334444544 57889999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHHc---CCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALKL---GFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~~---glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
.......++.+|++|+|+|.++.- +......+..+... ++|+++|.||+|+.+.+... .+....... .
T Consensus 67 ~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~-~~~~~~~~~-------~ 138 (175)
T d2f9la1 67 RRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP-TDEARAFAE-------K 138 (175)
T ss_dssp TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC-HHHHHHHHH-------H
T ss_pred HHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccch-HHHHHHhhc-------c
Confidence 999999999999999999998742 23344455555443 57899999999986543211 111111111 1
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...|++.+||++|. |++++|+.+++.+
T Consensus 139 ~~~~~~e~Sa~~g~----------~i~e~f~~l~~~i 165 (175)
T d2f9la1 139 NNLSFIETSALDST----------NVEEAFKNILTEI 165 (175)
T ss_dssp TTCEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred cCceEEEEecCCCc----------CHHHHHHHHHHHH
Confidence 23579999999998 9999988887654
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=7.2e-14 Score=145.66 Aligned_cols=155 Identities=22% Similarity=0.237 Sum_probs=109.1
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCchHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df~~e 1001 (1527)
+|+++|..|+|||||+++|+... +. .+....++.......+..+ .+.+++|||||+.+|...
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 65 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDS--FD--------------NTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSL 65 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC--CC--------------SSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGG
T ss_pred EEEEECCCCcCHHHHHHHHHhCC--CC--------------CccccceeeeccceeeccCCCceeeeecccCCcchhccc
Confidence 69999999999999999998642 11 1111222333333333333 467899999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
....+..+|++++|+|.++.... +....|..... .+.|.++|.||+|+.+.+.. ..++...... ...+
T Consensus 66 ~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~-~~~~~~~~~~-------~~~~ 137 (164)
T d1yzqa1 66 IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQV-SIEEGERKAK-------ELNV 137 (164)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCS-CHHHHHHHHH-------HTTC
T ss_pred hHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhh-hHHHHHHHHH-------HcCC
Confidence 99999999999999999875332 33444444433 46888899999998643321 1223322221 2346
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+++.+||++|. |++++|+.|++.+|
T Consensus 138 ~~~e~SAk~g~----------~v~e~f~~i~~~l~ 162 (164)
T d1yzqa1 138 MFIETSAKAGY----------NVKQLFRRVAAALP 162 (164)
T ss_dssp EEEECCTTTCT----------THHHHHHHHHHHSC
T ss_pred EEEEecCCCCc----------CHHHHHHHHHHhhC
Confidence 79999999998 99999999999987
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.44 E-value=9.9e-14 Score=148.78 Aligned_cols=157 Identities=11% Similarity=0.104 Sum_probs=109.7
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
|..+|+++|..+||||||+++|....+. +.|++..+ ...+......+.+|||+|++.|...+..+++.++++++|+
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~--~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 76 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGII--EYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLV 76 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCE--EEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEE--EEEEeccceeeeeccccccccccccccccccccceeeEee
Confidence 3468999999999999999999888763 44544433 4556677889999999999999999999999999999999
Q ss_pred eCCCCC-----------cHHHHHHHHHHH----HcCCCEEEEEEcccCCcchh-------------------HHHHHHHh
Q psy1758 148 AADDGV-----------MPQTREAIAHAK----ISGVPLIVAINKIDKLDINL-------------------DRIKQDLI 193 (1527)
Q Consensus 148 da~~g~-----------~~qt~e~i~~~~----~~~vpiIvviNKiDl~~~~~-------------------~~~~~~l~ 193 (1527)
|+++.. ..+..+.|..+. ..++|+++++||+|+..... ......+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 156 (200)
T d2bcjq2 77 ALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFIL 156 (200)
T ss_dssp EGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHH
T ss_pred eccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHH
Confidence 998732 122233333322 35789999999999853211 00011111
Q ss_pred hhc-ccccccCCCCcEEEeeccCCCChhHHHHHHHH
Q psy1758 194 SEQ-VIPEEYGGASPFISISAKTGVGINKLLENISL 228 (1527)
Q Consensus 194 ~~~-~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~ 228 (1527)
... .........+.++++||++|.||+++|+.|..
T Consensus 157 ~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~ 192 (200)
T d2bcjq2 157 KMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD 192 (200)
T ss_dssp HHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHH
Confidence 000 00011123356889999999999999998854
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.44 E-value=1.1e-13 Score=148.63 Aligned_cols=156 Identities=14% Similarity=0.186 Sum_probs=101.5
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVV 147 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVv 147 (1527)
|..+|+++|.+|||||||+++|. +.....|++. +....+...+.++.+|||+|++.+...+..+++.++++++++
T Consensus 1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG--~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~ 75 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKG--IHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLV 75 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSS--EEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeee--eEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEE
Confidence 45789999999999999999994 4444555444 445567888899999999999999999999999999999999
Q ss_pred eCCCCCc-----------HHHHHHHHHH----HHcCCCEEEEEEcccCCcch-------------------hHHHHHHHh
Q psy1758 148 AADDGVM-----------PQTREAIAHA----KISGVPLIVAINKIDKLDIN-------------------LDRIKQDLI 193 (1527)
Q Consensus 148 da~~g~~-----------~qt~e~i~~~----~~~~vpiIvviNKiDl~~~~-------------------~~~~~~~l~ 193 (1527)
|.++... ..+...+..+ ...++|+++++||+|+.... .......+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 155 (200)
T d1zcba2 76 SSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLV 155 (200)
T ss_dssp ETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHH
T ss_pred EcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHH
Confidence 9998432 1222222222 23578999999999985311 111111111
Q ss_pred hhc--ccccccCCCCcEEEeeccCCCChhHHHHHHHH
Q psy1758 194 SEQ--VIPEEYGGASPFISISAKTGVGINKLLENISL 228 (1527)
Q Consensus 194 ~~~--~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~ 228 (1527)
... .........+.++++||+++.||+++|+.+..
T Consensus 156 ~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d 192 (200)
T d1zcba2 156 ECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD 192 (200)
T ss_dssp HHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHH
Confidence 110 00111112345668999999999999998754
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.44 E-value=8.9e-14 Score=145.30 Aligned_cols=157 Identities=20% Similarity=0.220 Sum_probs=104.0
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
+.+|+++|.+++|||||+++|+... +.. ...+..|.+.......+....+.+++|||||+..|...
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~--~~~------------~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~ 67 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDK--FNP------------SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI 67 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC--CCC-------------------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCC--CCC------------ccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHH
Confidence 5689999999999999999998541 110 01112233333333333334467889999999999888
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTRFVT-RKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
...+++.+|++++|+|.++....+....| ..... ...|.+++.||.|....... .++...... ...+
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~--~~~~~~~~~-------~~~~ 138 (166)
T d1g16a_ 68 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVT--ADQGEALAK-------ELGI 138 (166)
T ss_dssp CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSC--HHHHHHHHH-------HHTC
T ss_pred HHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhh--HHHHHHHHH-------hcCC
Confidence 88999999999999999984322222222 22222 34677888999998654321 222222221 2246
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
|++++||++|. |++++|+.|++.+
T Consensus 139 ~~~~~Sa~~~~----------~v~e~f~~l~~~i 162 (166)
T d1g16a_ 139 PFIESSAKNDD----------NVNEIFFTLAKLI 162 (166)
T ss_dssp CEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred eEEEECCCCCC----------CHHHHHHHHHHHH
Confidence 89999999999 9999999998764
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.44 E-value=1.8e-13 Score=143.11 Aligned_cols=159 Identities=18% Similarity=0.205 Sum_probs=107.7
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|.+++|||||+++|....-.-. .....+.+..............+.+|||||+.++....
T Consensus 5 ~Ki~lvG~~~vGKTsli~rl~~~~f~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~ 70 (167)
T d1z0ja1 5 LKVCLLGDTGVGKSSIMWRFVEDSFDPN--------------INPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALA 70 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTT--------------CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGT
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCcc--------------cccccccccccccccccccccceeeeecCCchhhhHHH
Confidence 4799999999999999999986421100 11122333333333333334578899999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
...++.+|++|+|+|.+....-+. +..+..... ...|+++|.||+|+...+.. ..++.++... ...+|
T Consensus 71 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v-~~~~~~~~~~-------~~~~~ 142 (167)
T d1z0ja1 71 PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREV-MERDAKDYAD-------SIHAI 142 (167)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCS-CHHHHHHHHH-------HTTCE
T ss_pred HHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccch-hHHHHHHHHH-------HcCCE
Confidence 999999999999999986322222 222323332 46788899999998643211 1122222211 23467
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
++.+||++|. |++++|..|++.+|+
T Consensus 143 ~~e~SAk~~~----------nV~e~f~~l~~~i~~ 167 (167)
T d1z0ja1 143 FVETSAKNAI----------NINELFIEISRRIPS 167 (167)
T ss_dssp EEECBTTTTB----------SHHHHHHHHHHHCCC
T ss_pred EEEEecCCCC----------CHHHHHHHHHHhCCC
Confidence 9999999998 999999999999985
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1.9e-13 Score=143.49 Aligned_cols=160 Identities=19% Similarity=0.191 Sum_probs=98.9
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
...+|+++|.+++|||||+++++......... ...-|.++...........+.++||||||+.+|..
T Consensus 5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~ 71 (170)
T d2g6ba1 5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-------------ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS 71 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCC-------------CCCCSCEEEEEEEEETTEEEEEEEEECCCC-----
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccc-------------cceeeeeeEEEEEEecCcEEEEEEEECCCchhhHH
Confidence 44689999999999999999998642211110 11123333333333322335789999999999998
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
.....++.+|++++|+|.++.... .....+..... ...|.++|.||+|....+.-. .++...... ...
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~-~~~~~~~~~-------~~~ 143 (170)
T d2g6ba1 72 VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVK-REDGEKLAK-------EYG 143 (170)
T ss_dssp ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSC-HHHHHHHHH-------HHT
T ss_pred HHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhccccc-HHHHHHHHH-------HcC
Confidence 888889999999999999863322 22333333322 357788889999987643211 122222211 224
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+|++.+||++|. |++++++.|++.+
T Consensus 144 ~~~~e~Sak~g~----------gi~e~f~~l~~~i 168 (170)
T d2g6ba1 144 LPFMETSAKTGL----------NVDLAFTAIAKEL 168 (170)
T ss_dssp CCEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred CEEEEEeCCCCc----------CHHHHHHHHHHHc
Confidence 689999999998 9999999998754
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.4e-13 Score=142.55 Aligned_cols=158 Identities=16% Similarity=0.232 Sum_probs=109.4
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|.+++|||||+++|+... +.. ......+.+..............+++|||||+.+|....
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~--f~~------------~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~ 72 (170)
T d1r2qa_ 7 FKLVLLGESAVGKSSLVLRFVKGQ--FHE------------FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--CCT------------TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC--CCc------------ccccccccccccceeeccceEEEEEeccCCCchhhhhhH
Confidence 479999999999999999998641 111 112233444433333333334678999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1003 ERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
...++.+|++++|+|.++.. ..+....|....+ .++|.++|.||+|+...+.-. .++.+... ....+|
T Consensus 73 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~-~e~~~~~~-------~~~~~~ 144 (170)
T d1r2qa_ 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD-FQEAQSYA-------DDNSLL 144 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC-HHHHHHHH-------HHTTCE
T ss_pred HHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeeccccccccccccc-HHHHHHHH-------HhcCCE
Confidence 99999999999999988642 2333444444433 367888999999986532110 12222211 123468
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
++.+||++|. |++++|+.|++.++
T Consensus 145 ~~e~SAk~g~----------~V~e~f~~l~~~i~ 168 (170)
T d1r2qa_ 145 FMETSAKTSM----------NVNEIFMAIAKKLP 168 (170)
T ss_dssp EEECCTTTCT----------THHHHHHHHHHTSC
T ss_pred EEEeeCCCCC----------CHHHHHHHHHHHHh
Confidence 9999999998 99999999998775
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=5.7e-13 Score=140.49 Aligned_cols=161 Identities=20% Similarity=0.164 Sum_probs=108.9
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
..-+|+|+|++|||||||+|+|+++...+.. ...+.+..........+...+..+|+||......
T Consensus 4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (179)
T d1egaa1 4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITS---------------RKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 68 (179)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECC---------------CCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHhCCCceeec---------------cCCCceEEEEEeeeecCCceeEeecCCCceecch
Confidence 3457999999999999999999865211111 1112222222344455667788899999766544
Q ss_pred HHHHHH---------HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc
Q psy1758 1001 EVERIL---------SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 1001 ev~~~l---------~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~ 1071 (1527)
.-.... ..+|.+++++|+.+ ...+...++..+.+...|.++|+||+|..... .............+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~~-~~~~~~~~~~~~~~~-- 144 (179)
T d1egaa1 69 RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEK-ADLLPHLQFLASQMN-- 144 (179)
T ss_dssp HHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCH-HHHHHHHHHHHTTSC--
T ss_pred hhhhhhhhhccccchhhcceeEEEEecCc-cchhHHHHHHHhhhccCceeeeeeeeeccchh-hhhhhHhhhhhhhcC--
Confidence 333222 34678888888764 55666677777778889999999999987643 223333333222222
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
..|++++||++|+ |+++|++.|.+++|..
T Consensus 145 ----~~~~~~vSA~~g~----------gi~~L~~~i~~~lpe~ 173 (179)
T d1egaa1 145 ----FLDIVPISAETGL----------NVDTIAAIVRKHLPEA 173 (179)
T ss_dssp ----CSEEEECCTTTTT----------THHHHHHHHHTTCCBC
T ss_pred ----CCCEEEEeCcCCC----------CHHHHHHHHHHhCCCC
Confidence 2479999999998 9999999999999754
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=5.8e-14 Score=147.53 Aligned_cols=157 Identities=17% Similarity=0.218 Sum_probs=107.6
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|.+++|||||+++|+... +.. ..+...|.+............+.+.+|||||...|....
T Consensus 4 ~Ki~vvG~~~vGKTsli~~~~~~~--f~~------------~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 69 (170)
T d1i2ma_ 4 FKLVLVGDGGTGKTTFVKRHLTGE--FEK------------KYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 69 (170)
T ss_dssp EEEEEEECTTSSHHHHHHTTC-------C------------CEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC--CCc------------ccccceeccccccccccccccccccccccccccccceec
Confidence 379999999999999999997541 111 011223444433333333345789999999999988888
Q ss_pred HHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHH--HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcE
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPM-PQTRFVTRKAL--KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPV 1079 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~--~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pv 1079 (1527)
...++.+|++++|+|+++... ......+.... ..++|+++|.||+|+...+..+ +.... .....+|+
T Consensus 70 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~---~~~~~-------~~~~~~~~ 139 (170)
T d1i2ma_ 70 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA---KSIVF-------HRKKNLQY 139 (170)
T ss_dssp GGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTT---TSHHH-------HSSCSSEE
T ss_pred chhcccccchhhccccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhh---HHHHH-------HHHcCCEE
Confidence 888999999999999987432 22334444333 2479999999999987654221 11111 11235689
Q ss_pred EEeccccCCcCCCcccccCCChhHHHHHHhhcCC
Q psy1758 1080 IYTSALHGYANENSKARQGNMIPLFEAILKYVPV 1113 (1527)
Q Consensus 1080 i~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~ 1113 (1527)
+.+||++|. |++++|+.|++.+..
T Consensus 140 ~e~Sak~~~----------~v~e~f~~l~~~l~~ 163 (170)
T d1i2ma_ 140 YDISAKSNY----------NFEKPFLWLARKLIG 163 (170)
T ss_dssp EEEBTTTTB----------TTTHHHHHHHHHHHT
T ss_pred EEEeCCCCC----------CHHHHHHHHHHHHcc
Confidence 999999998 999999999987753
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.42 E-value=1.3e-13 Score=149.29 Aligned_cols=113 Identities=20% Similarity=0.279 Sum_probs=86.3
Q ss_pred CCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHH----HHHhhccccCEE
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTA----MRARGAKVTDIV 143 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~----~~~~~~~~aD~~ 143 (1527)
..|+|+|+|++|||||||+|+|.+..+. +++|.+.....+..++..+.+||||||+.+.. ....++..++.+
T Consensus 2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~ 77 (209)
T d1nrjb_ 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGL 77 (209)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCC----CBCCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhcccc
Confidence 3579999999999999999999987653 56676666777778888999999999986544 444556777999
Q ss_pred EEEEeCCCCC--cHHH-------HHHHHHHHHcCCCEEEEEEcccCCcch
Q psy1758 144 VLVVAADDGV--MPQT-------REAIAHAKISGVPLIVAINKIDKLDIN 184 (1527)
Q Consensus 144 IlVvda~~g~--~~qt-------~e~i~~~~~~~vpiIvviNKiDl~~~~ 184 (1527)
++++|+.+.. ..++ ...+..+...++|+++|+||+|+.+..
T Consensus 78 i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~ 127 (209)
T d1nrjb_ 78 IFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 127 (209)
T ss_dssp EEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred ceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence 9999988643 2222 233344555789999999999997643
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.41 E-value=1.1e-13 Score=145.68 Aligned_cols=160 Identities=20% Similarity=0.253 Sum_probs=93.0
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEE-EEecCeEEEEEeCCCCCCchH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCS-IEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~-~~~~~~~iniiDTPGh~df~~ 1000 (1527)
+.+|+++|.+|+|||||+++|+.....-.. ....|.+....... .......+.++||||+.++..
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 67 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQY--------------KATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS 67 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----------------CCCSCEEEEECCSSSCCEEEEEECCC-------
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCcc--------------CcccccceeeeeeeecCcccccceeeccCCchhhhh
Confidence 578999999999999999999864211000 00111111111110 111235789999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH-------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK-------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATE 1072 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~-------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~ 1072 (1527)
.....++.+|++++|+|+++... .....++..+.+ .++|+++|.||+|+.+.+..-..++.++.....+
T Consensus 68 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~--- 144 (175)
T d1ky3a_ 68 LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLG--- 144 (175)
T ss_dssp ---CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTT---
T ss_pred HHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcC---
Confidence 88889999999999999987432 222333333332 3689999999999865321001122222111211
Q ss_pred cccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1073 EQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1073 ~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+|++.+||++|. |++++|+.|++.+
T Consensus 145 ---~~~~~e~SA~~g~----------gv~e~f~~l~~~~ 170 (175)
T d1ky3a_ 145 ---DIPLFLTSAKNAI----------NVDTAFEEIARSA 170 (175)
T ss_dssp ---SCCEEEEBTTTTB----------SHHHHHHHHHHHH
T ss_pred ---CCeEEEEeCCCCc----------CHHHHHHHHHHHH
Confidence 3578999999998 9999999887643
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.41 E-value=2.5e-13 Score=142.36 Aligned_cols=159 Identities=19% Similarity=0.220 Sum_probs=108.7
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|..++|||||+++++...- . + ......|.++...........+.+++|||||+.++....
T Consensus 4 iKi~vvG~~~vGKTsLi~~~~~~~f--~----------~--~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~ 69 (170)
T d1ek0a_ 4 IKLVLLGEAAVGKSSIVLRFVSNDF--A----------E--NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLA 69 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--C----------T--TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC--C----------c--cccccccceeeccccccccccccccccccCCchhHHHHH
Confidence 4799999999999999999985521 1 0 111223444444333333344789999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH---cCCccEEEEeccCCCCCCh-hhh-HHHHHHHHhhhcccccccC
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK---LGFKPIVVVNKIDRSNARP-EWV-VDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~---~glp~IvviNKiD~~~a~~-~~v-~~~~~~~~~~l~~~~~~~~ 1076 (1527)
...+..+|++++|+|.++..... ....+..... ...|.+++.||+|+..... ..+ .++.++... ...
T Consensus 70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~-------~~~ 142 (170)
T d1ek0a_ 70 PMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAE-------EKG 142 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH-------HHT
T ss_pred HHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHH-------HcC
Confidence 99999999999999998743222 2233333222 3567889999999754321 111 122222221 234
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+|++.+||++|. |++++|..|++.+|
T Consensus 143 ~~~~e~Sak~g~----------gV~e~F~~i~~~i~ 168 (170)
T d1ek0a_ 143 LLFFETSAKTGE----------NVNDVFLGIGEKIP 168 (170)
T ss_dssp CEEEECCTTTCT----------THHHHHHHHHTTSC
T ss_pred CEEEEecCCCCc----------CHHHHHHHHHHHhc
Confidence 689999999998 99999999999887
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=2.4e-13 Score=143.59 Aligned_cols=159 Identities=19% Similarity=0.201 Sum_probs=106.7
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|.+|+|||||+++|+...- .. ......+.+.......+....+.++||||||+.++....
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 73 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTDDTF--DP------------ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT 73 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--CT------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSH
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCC--CC------------ccccceeecceeEEEEEeccccEEEEEECCCchhhHHHH
Confidence 5799999999999999999986421 10 001112233333333333345689999999999999888
Q ss_pred HHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
...+..+|++++|+|.++.... .....+..+.+ ...|++++.||.|....... .++..+... ...+
T Consensus 74 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~--~~~~~~~~~-------~~~~ 144 (177)
T d1x3sa1 74 PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVD--RNEGLKFAR-------KHSM 144 (177)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSC--HHHHHHHHH-------HTTC
T ss_pred HHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeecccccccccc--HHHHHHHHH-------HCCC
Confidence 8999999999999998863222 22334444433 24677888999997653321 122222211 1346
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
+++.+||++|. |++++|+.+++.+..+
T Consensus 145 ~~~e~Sa~tg~----------gv~e~f~~l~~~l~~~ 171 (177)
T d1x3sa1 145 LFIEASAKTCD----------GVQCAFEELVEKIIQT 171 (177)
T ss_dssp EEEECCTTTCT----------THHHHHHHHHHHHHTS
T ss_pred EEEEEeCCCCC----------CHHHHHHHHHHHHccC
Confidence 79999999998 9999999998876443
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=7.1e-13 Score=138.97 Aligned_cols=156 Identities=19% Similarity=0.175 Sum_probs=101.9
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|.+++|||||+++|+... +.... ....|... .....+....+.+.+|||||...|....
T Consensus 3 ~Ki~viG~~~vGKTsLi~r~~~~~--f~~~~------------~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~ 67 (171)
T d2erxa1 3 YRVAVFGAGGVGKSSLVLRFVKGT--FRESY------------IPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQ 67 (171)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCC--CCSSC------------CCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCCcc------------Ccceeecc-ccceeeccccceeccccccccccccccc
Confidence 379999999999999999998642 11100 00111111 1111222223577889999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHH-----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPM-PQTRFVTRKAL-----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~-----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
...++.+|++++|+|+++... ......+.... ..++|+++|.||+|+...+.- ..++.+.... ...
T Consensus 68 ~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v-~~~e~~~~~~-------~~~ 139 (171)
T d2erxa1 68 RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREV-QSSEAEALAR-------TWK 139 (171)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCS-CHHHHHHHHH-------HHT
T ss_pred cccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccc-cHHHHHHHHH-------HcC
Confidence 999999999999999986321 12233333332 246789999999998543210 0122222111 224
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+|++.+||++|. |++++|+.|++.+
T Consensus 140 ~~~~e~Sak~~~----------~v~e~f~~l~~~~ 164 (171)
T d2erxa1 140 CAFMETSAKLNH----------NVKELFQELLNLE 164 (171)
T ss_dssp CEEEECBTTTTB----------SHHHHHHHHHHTC
T ss_pred CeEEEEcCCCCc----------CHHHHHHHHHHHH
Confidence 689999999998 9999999998765
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=2.3e-13 Score=144.85 Aligned_cols=159 Identities=19% Similarity=0.182 Sum_probs=101.3
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEE----------ecCeEEEEE
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIE----------YNGTRINII 990 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~----------~~~~~inii 990 (1527)
...+|+++|++|+|||||+++|+... +... .....+.+.......+. .....++++
T Consensus 4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~--~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~ 69 (186)
T d2f7sa1 4 YLIKLLALGDSGVGKTTFLYRYTDNK--FNPK------------FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLW 69 (186)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSC--CCCE------------EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHhcCC--CCCc------------cCCcccceeeEEEEEEecccccccccccceEEeccc
Confidence 45689999999999999999998542 1110 00111111111111111 113579999
Q ss_pred eCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHH-HH----HcCCccEEEEeccCCCCCChhhhHHHHHHHH
Q psy1758 991 DTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRK-AL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLF 1065 (1527)
Q Consensus 991 DTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~-~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~ 1065 (1527)
||||+.+|.......++.+|++|+|+|+++....+....|.. .. ....|+++|.||+|+...+.- ..++..+..
T Consensus 70 dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v-~~~e~~~~~ 148 (186)
T d2f7sa1 70 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREV-NERQARELA 148 (186)
T ss_dssp EEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCS-CHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcc-hHHHHHHHH
Confidence 999999999999999999999999999987322222222211 11 123567888999998643210 011222221
Q ss_pred hhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1066 DKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1066 ~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...++|++.+||++|. |++++++.+++.+
T Consensus 149 -------~~~~~~~~e~Sak~~~----------~i~e~f~~l~~~i 177 (186)
T d2f7sa1 149 -------DKYGIPYFETSAATGQ----------NVEKAVETLLDLI 177 (186)
T ss_dssp -------HHTTCCEEEEBTTTTB----------THHHHHHHHHHHH
T ss_pred -------HHcCCEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 1234689999999998 9999999988754
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.40 E-value=6.2e-13 Score=139.27 Aligned_cols=157 Identities=18% Similarity=0.228 Sum_probs=102.0
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
+.+|+++|.+++|||||+++++... +... .+...|.+.. ....+....+.+.+|||||+.++...
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~--f~~~------------~~~T~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~ 68 (168)
T d1u8za_ 4 LHKVIMVGSGGVGKSALTLQFMYDE--FVED------------YEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAI 68 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC--CCSC------------CCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCC--CCcc------------cCCccccccc-cccccccccccccccccccccchhhh
Confidence 4589999999999999999998542 1110 0111222221 11222223467889999999999988
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTR-FVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
....++.+|++++|+|.++....+.. .++..+.+ .++|.++|.||+|+...+.- ..++....... ..
T Consensus 69 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v-~~~~~~~~~~~-------~~ 140 (168)
T d1u8za_ 69 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV-SVEEAKNRADQ-------WN 140 (168)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCS-CHHHHHHHHHH-------HT
T ss_pred hhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccc-cHHHHHHHHHH-------cC
Confidence 88999999999999999874333322 23333332 47899999999998643210 11223222222 23
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
++++.+||++|. |++++|+.|++.+
T Consensus 141 ~~~~e~Sak~g~----------gv~e~f~~l~~~i 165 (168)
T d1u8za_ 141 VNYVETSAKTRA----------NVDKVFFDLMREI 165 (168)
T ss_dssp CEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred CeEEEEcCCCCc----------CHHHHHHHHHHHH
Confidence 578999999998 9999999988765
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.39 E-value=3.1e-13 Score=146.20 Aligned_cols=112 Identities=21% Similarity=0.364 Sum_probs=83.7
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
++|+|+|++|+|||||+|+|++..- ..++|.......+.+++..+.++|||||..+....
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~~~--------------------~~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 63 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTDSV--------------------RPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKL 63 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSC--------------------CCBCCCSSCEEETTGGGSSCEEEECCCCGGGTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC--------------------CCeEEecceEEEEEeCCeEEEEEecccccchhhHH
Confidence 5899999999999999999986411 13455555666777888999999999999865554
Q ss_pred HH----HHHhcCEEEEEEeCCCCCC--hhH-------HHHHHHHHHcCCccEEEEeccCCCCCCh
Q psy1758 1003 ER----ILSMVDNVLLLIDAVEGPM--PQT-------RFVTRKALKLGFKPIVVVNKIDRSNARP 1054 (1527)
Q Consensus 1003 ~~----~l~~aD~ailVVDa~~G~~--~qt-------~~~~~~~~~~glp~IvviNKiD~~~a~~ 1054 (1527)
.. ++..+|.+++++|+..... ..+ ...+..+...++|+++|+||+|+.++..
T Consensus 64 ~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~ 128 (209)
T d1nrjb_ 64 SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 128 (209)
T ss_dssp HHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred HHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence 44 4566799999999986543 232 2233344456899999999999987654
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=8.1e-13 Score=138.65 Aligned_cols=156 Identities=20% Similarity=0.283 Sum_probs=99.5
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|.+++|||||+++++.....-. . +...|... .....+....+.+++|||||+.+|....
T Consensus 6 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~-~-------------~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~ 70 (171)
T d2erya1 6 YRLVVVGGGGVGKSALTIQFIQSYFVTD-Y-------------DPTIEDSY-TKQCVIDDRAARLDILDTAGQEEFGAMR 70 (171)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCSS-C-------------CTTCCEEE-EEEEEETTEEEEEEEEECC----CCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-c-------------Ccccccce-eeeeeecccccccccccccccccccccc
Confidence 4799999999999999999986421110 0 01111111 1112222234689999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
...++.+|++++|+|.++.... ....++.... ....|.|+|.||+|+...+.- ..++..... ....+
T Consensus 71 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v-~~~~~~~~~-------~~~~~ 142 (171)
T d2erya1 71 EQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQV-TQEEGQQLA-------RQLKV 142 (171)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSS-CHHHHHHHH-------HHTTC
T ss_pred cccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccc-hHHHHHHHH-------HHcCC
Confidence 9999999999999999873222 2222333222 235788999999998654311 112222221 12346
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
|++.+||++|. |++++|+.|++.+
T Consensus 143 ~~~e~Sak~~~----------~i~e~f~~l~~~i 166 (171)
T d2erya1 143 TYMEASAKIRM----------NVDQAFHELVRVI 166 (171)
T ss_dssp EEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred EEEEEcCCCCc----------CHHHHHHHHHHHH
Confidence 89999999998 9999999998754
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.3e-13 Score=143.79 Aligned_cols=161 Identities=15% Similarity=0.072 Sum_probs=101.4
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
++|+++|..++|||||+++++... +.... ...-| ........+..+.+.+.||||||+..|....
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~--f~~~~------------~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 67 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQ--FPEVY------------VPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLR 67 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC--CCSSC------------CCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC--CCCCc------------CCcee-eeccccccccccceeeeccccCccchhcccc
Confidence 589999999999999999998642 11100 00011 1111222233345679999999999999988
Q ss_pred HHHHHhcCEEEEEEeCCCCCChh-HHHHHHH-HHH--cCCccEEEEeccCCCCCChhhhHHHHHHHHhhh------cccc
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMPQ-TRFVTRK-ALK--LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKL------CATE 1072 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~-~~~--~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l------~~~~ 1072 (1527)
..+++.+|++|||+|.++...-+ ....|.. ... .++|+++|.||+|+...+. ..++....-... ....
T Consensus 68 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~--~~~~~~~~~~~~v~~~e~~~~a 145 (177)
T d1kmqa_ 68 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH--TRRELAKMKQEPVKPEEGRDMA 145 (177)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHH--HHHHHHHTTCCCCCHHHHHHHH
T ss_pred hhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhh--HHHHHHHhhcccccHHHHHHHH
Confidence 88999999999999998732111 1222222 222 3689999999999976432 111111100000 0000
Q ss_pred ccc-CCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1073 EQL-DFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1073 ~~~-~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
... .++++.+||++|. |++++|+.+++.
T Consensus 146 ~~~~~~~~~E~SAkt~~----------gi~e~F~~i~~~ 174 (177)
T d1kmqa_ 146 NRIGAFGYMECSAKTKD----------GVREVFEMATRA 174 (177)
T ss_dssp HHTTCSEEEECCTTTCT----------THHHHHHHHHHH
T ss_pred HHcCCcEEEEecCCCCc----------CHHHHHHHHHHH
Confidence 011 2578999999998 999999998764
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=7.1e-13 Score=140.22 Aligned_cols=168 Identities=14% Similarity=0.072 Sum_probs=107.0
Q ss_pred cccccceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCC
Q psy1758 914 LSDENIYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTP 993 (1527)
Q Consensus 914 lsq~~~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTP 993 (1527)
+++.|.++.++|+|+|++|+|||||+|+|+....... ....+.|.........+.+......+++
T Consensus 8 ~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (188)
T d1puia_ 8 IRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLAR---------------TSKTPGRTQLINLFEVADGKRLVDLPGY 72 (188)
T ss_dssp GGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------------------CCEEEEEEETTEEEEECCCC
T ss_pred hhHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEe---------------ecccccceeeccceecccccceeeeecc
Confidence 3455667788999999999999999999976522111 1112233333333444556666666666
Q ss_pred CCCCchH-----------HHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHHH
Q psy1758 994 GHADFGG-----------EVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDAT 1061 (1527)
Q Consensus 994 Gh~df~~-----------ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~~ 1061 (1527)
+...... ........++.++.+.|+..+...+....+......+.+.++++||+|+.+.. .....+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~ 152 (188)
T d1puia_ 73 GYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMV 152 (188)
T ss_dssp C------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhhhhhhhheeEEEEeecccccchhHHHHHHHHhhhccccccchhhhhhccCHHHHHHHHHHH
Confidence 5433111 11111244567778888888988888888888888999999999999986532 23334444
Q ss_pred HHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1062 FDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1062 ~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+.+.... ...|++++||++|. |+++|++.|.+++
T Consensus 153 ~~~l~~~~-----~~~~~i~vSA~~g~----------Gid~L~~~i~~~~ 187 (188)
T d1puia_ 153 REAVLAFN-----GDVQVETFSSLKKQ----------GVDKLRQKLDTWF 187 (188)
T ss_dssp HHHHGGGC-----SCEEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred HHHHHhhC-----CCCcEEEEeCCCCC----------CHHHHHHHHHHHh
Confidence 44433222 23579999999999 9999999997764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=4.3e-13 Score=140.17 Aligned_cols=156 Identities=17% Similarity=0.210 Sum_probs=103.0
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|.+|+|||||+++|+...-.-...+. -| ........+.-....+++|||||...+....
T Consensus 4 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t--------------~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~ 68 (167)
T d1kaoa_ 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPT--------------IE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMR 68 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTT--------------CC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCCccCCc--------------ee-eeeeeeeecCcceEeeccccCCCccccccch
Confidence 47999999999999999999865211110000 11 1111112222223578999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
...++.+|++++|+|.++...- ....++..+.. .++|+++|.||+|+...+... .++...... ...+
T Consensus 69 ~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~-~~~~~~~~~-------~~~~ 140 (167)
T d1kaoa_ 69 DLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVS-SSEGRALAE-------EWGC 140 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSC-HHHHHHHHH-------HHTS
T ss_pred HHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccch-HHHHHHHHH-------HcCC
Confidence 9999999999999999863222 22233333322 368899999999986533211 122222111 1245
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
|++.+||++|. |++++|+.+++.+
T Consensus 141 ~~~e~Sak~g~----------~i~e~f~~i~~~i 164 (167)
T d1kaoa_ 141 PFMETSAKSKT----------MVDELFAEIVRQM 164 (167)
T ss_dssp CEEEECTTCHH----------HHHHHHHHHHHHH
T ss_pred eEEEECCCCCc----------CHHHHHHHHHHHH
Confidence 79999999998 9999999987654
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.2e-12 Score=136.72 Aligned_cols=153 Identities=15% Similarity=0.153 Sum_probs=103.8
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe--cCeEEEEEeCCCCCCchH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY--NGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~--~~~~iniiDTPGh~df~~ 1000 (1527)
.+|+++|.+++|||||+++|+...- ... .....|.+.. ..+.. ....+++||+||+..|..
T Consensus 4 ~Ki~viG~~~vGKTsli~~l~~~~~--~~~------------~~~~~~~~~~---~~~~~~~~~~~l~~~d~~~~~~~~~ 66 (166)
T d1ctqa_ 4 YKLVVVGAGGVGKSALTIQLIQNHF--VDE------------YDPTIEDSYR---KQVVIDGETCLLDILDTAGQEEYSA 66 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCC--CCS------------CCCCSEEEEE---EEEEETTEEEEEEEEEECCCGGGHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CCc------------cCCccceeec---cceeeeceeeeeeeeeccCcccccc
Confidence 4799999999999999999986421 110 0011112111 11222 236789999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
.....++.+|++++|+|.++....+. ..++..+.+ .++|+++|.||+|+...... .+++.+... ..
T Consensus 67 ~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~-------~~ 137 (166)
T d1ctqa_ 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE--SRQAQDLAR-------SY 137 (166)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSC--HHHHHHHHH-------HH
T ss_pred chhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccccccc--HHHHHHHHH-------Hh
Confidence 99999999999999999987432222 223333332 35899999999998654321 223322211 23
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+|++.+||++|. |++++|+.+++.+
T Consensus 138 ~~~~~e~Sak~g~----------gi~e~f~~i~~~i 163 (166)
T d1ctqa_ 138 GIPYIETSAKTRQ----------GVEDAFYTLVREI 163 (166)
T ss_dssp TCCEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCc----------CHHHHHHHHHHHH
Confidence 4689999999998 9999999998765
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.37 E-value=3.1e-13 Score=143.69 Aligned_cols=158 Identities=22% Similarity=0.264 Sum_probs=107.3
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
+.+|+++|.+|+|||||+++|++.. +.. ...+..|.+............+.+.++||||+.++...
T Consensus 2 ~~Kv~vvG~~~vGKSSLi~~l~~~~--f~~------------~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 67 (184)
T d1vg8a_ 2 LLKVIILGDSGVGKTSLMNQYVNKK--FSN------------QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL 67 (184)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC--CCS------------SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCC--CCC------------CcCCccceeeeeeeeeeCCceEEEEeeecCCccccccc
Confidence 3589999999999999999998642 110 01122345554444444445578999999999998888
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH-------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK-------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~-------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
....+..+|++++++|.++...... ..++..... .++|.++|.||+|+.+... ..++.......
T Consensus 68 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~--~~~~~~~~~~~------ 139 (184)
T d1vg8a_ 68 GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQV--ATKRAQAWCYS------ 139 (184)
T ss_dssp CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCS--CHHHHHHHHHH------
T ss_pred ccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccch--hHHHHHHHHHH------
Confidence 8888999999999999986322221 222222222 3579999999999865431 12222222211
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...+|++.+||++|. |++++|+.+++.+
T Consensus 140 ~~~~~~~e~Sak~~~----------gI~e~f~~l~~~i 167 (184)
T d1vg8a_ 140 KNNIPYFETSAKEAI----------NVEQAFQTIARNA 167 (184)
T ss_dssp TTSCCEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred hcCCeEEEEcCCCCc----------CHHHHHHHHHHHH
Confidence 224689999999998 9999999887654
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.36 E-value=1.4e-12 Score=134.14 Aligned_cols=154 Identities=16% Similarity=0.110 Sum_probs=106.7
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|.+|+|||||+++|....-.. .+.+.........+..+.+.++|+||...+.....
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 62 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGEIVT-------------------TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 62 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC-------------------CCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc-------------------cccceeeEEEEEeeeeEEEEEecCCCcccchhhhh
Confidence 68999999999999999998652110 00111112234556778999999999999999999
Q ss_pred HHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCc
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFP 1078 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~p 1078 (1527)
..+..+|++++++|..+....+ ....+..... ...|.+++.||.|+.+..... ++...... ......+++
T Consensus 63 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~---~i~~~~~~--~~~~~~~~~ 137 (160)
T d1r8sa_ 63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA---EITDKLGL--HSLRHRNWY 137 (160)
T ss_dssp HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH---HHHHHTTG--GGCSSCCEE
T ss_pred hhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHH---HHHHHHHH--HHHhhCCCE
Confidence 9999999999999998643222 2233333332 357888999999998764322 22221111 111234578
Q ss_pred EEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1079 VIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1079 vi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
++++||++|. |++++|++|.+.+
T Consensus 138 ~~~~SAktg~----------gi~e~~~~l~~~l 160 (160)
T d1r8sa_ 138 IQATCATSGD----------GLYEGLDWLSNQL 160 (160)
T ss_dssp EEECBTTTTB----------THHHHHHHHHHHC
T ss_pred EEEeECCCCC----------CHHHHHHHHHhcC
Confidence 9999999999 9999999998754
|
| >d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor G (EF-G) species: Thermus thermophilus [TaxId: 274]
Probab=99.36 E-value=4.1e-14 Score=126.24 Aligned_cols=74 Identities=19% Similarity=0.372 Sum_probs=40.8
Q ss_pred cCCCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHh-cCcE
Q psy1758 1220 IDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRR-EGYE 1298 (1527)
Q Consensus 1220 ~~~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrr-eg~e 1298 (1527)
+|+|++++++.|.+. ++ ..+|.++|.++.++||||+++.++++++ ++++|||||||+|+++||+| +|++
T Consensus 1 vP~Pv~~~ai~p~~~---~D------~~kl~~aL~~L~~EDPsl~~~~d~et~e-~il~g~GelHLev~~~rL~~~~~ve 70 (75)
T d2bv3a4 1 VPEPVIDVAIEPKTK---AD------QEKLSQALARLAEESPTFSVSTHPETGS-TIISGMGELSLEIIVDRLKREFKVD 70 (75)
T ss_dssp CCCCCEECBCCC----------------------------CCSCEEEECSSSSC-EEEEBSSHHHHTTCC----------
T ss_pred CCCCcEEEEEEECCH---hH------HHHHHHHHHHHHhhCCceEEEEcCcCCc-EEEeeCCHhHHHHHHHHHHHHHCCc
Confidence 478999999987653 22 3689999999999999999999999999 99999999999999999975 5999
Q ss_pred EEEec
Q psy1758 1299 LSVSR 1303 (1527)
Q Consensus 1299 v~vs~ 1303 (1527)
+.+++
T Consensus 71 v~~gk 75 (75)
T d2bv3a4 71 ANVGK 75 (75)
T ss_dssp --CCC
T ss_pred eEeCC
Confidence 98763
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=4.5e-13 Score=142.68 Aligned_cols=163 Identities=14% Similarity=0.129 Sum_probs=104.3
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEe--cCeEEEEEeCCCCC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY--NGTRINIIDTPGHA 996 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~--~~~~iniiDTPGh~ 996 (1527)
...+.+|+++|..++|||||+++|+... +..... .++ + +.....+.. ..+.+++|||||+.
T Consensus 6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~--f~~~~~--~Ti----------~---~~~~~~~~~~~~~~~l~i~D~~g~e 68 (185)
T d2atxa1 6 GALMLKCVVVGDGAVGKTCLLMSYANDA--FPEEYV--PTV----------F---DHYAVSVTVGGKQYLLGLYDTAGQE 68 (185)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSS--CCCSCC--CSS----------C---CCEEEEEESSSCEEEEEEECCCCSS
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHhhCC--CCCcCC--Cce----------e---eeeeEEEeeCCceEEeecccccccc
Confidence 4556799999999999999999998642 111100 000 1 011111222 23678999999999
Q ss_pred CchHHHHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHH-H--HcCCccEEEEeccCCCCCChhh-----------hHHHH
Q psy1758 997 DFGGEVERILSMVDNVLLLIDAVEGPMP-QTRFVTRKA-L--KLGFKPIVVVNKIDRSNARPEW-----------VVDAT 1061 (1527)
Q Consensus 997 df~~ev~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~-~--~~glp~IvviNKiD~~~a~~~~-----------v~~~~ 1061 (1527)
.|.......++.+|++++|+|+++...- .....|... . ..++|.++|.||+|+.+..... ..++.
T Consensus 69 ~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~ 148 (185)
T d2atxa1 69 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQG 148 (185)
T ss_dssp SSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHH
T ss_pred hhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHH
Confidence 9998888899999999999999873211 122222222 2 2368899999999986532110 01111
Q ss_pred HHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1062 FDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1062 ~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.+...+.+ .++++.+||++|. |++++|+.+++.+-.|
T Consensus 149 ~~~a~~~~------~~~~~E~SAk~~~----------gv~e~F~~li~~il~P 185 (185)
T d2atxa1 149 QKLAKEIG------ACCYVECSALTQK----------GLKTVFDEAIIAILTP 185 (185)
T ss_dssp HHHHHHHT------CSCEEECCTTTCT----------THHHHHHHHHHHHHCC
T ss_pred HHHHHHcC------CCEEEEecCCCCc----------CHHHHHHHHHHHHcCC
Confidence 11111111 2578999999998 9999999998776443
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=7.7e-13 Score=139.14 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=104.5
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCch
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADFG 999 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df~ 999 (1527)
..+|+++|.+|+|||||+++++...-.. +..++.+.........+. ...++++||+|+..+.
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 66 (173)
T d2a5ja1 3 LFKYIIIGDTGVGKSCLLLQFTDKRFQP----------------VHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFR 66 (173)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---------------------CCSSEEEEEEEETTEEEEEEEECCTTGGGTS
T ss_pred eEEEEEECCCCcCHHHHHHHHhcCCCCC----------------CcccceeeccceeeeeeeeeEEEEEeecccCccchh
Confidence 4589999999999999999998652110 011112222222223333 4678999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHH---cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGP-MPQTRFVTRKALK---LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~-~~qt~~~~~~~~~---~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
......+..+|++|+|+|.++.. +......|..+.+ .++|+++|.||+|....+.. ..++...... ..
T Consensus 67 ~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~a~-------~~ 138 (173)
T d2a5ja1 67 SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDV-KREEGEAFAR-------EH 138 (173)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS-CHHHHHHHHH-------HH
T ss_pred hHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhh-HHHHHHHHHH-------Hc
Confidence 99999999999999999998632 2233444554544 36888999999997543321 1122222111 12
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+|++.+||++|. |+++++..+++.+
T Consensus 139 ~~~~~e~Sa~tg~----------~V~e~f~~i~~~i 164 (173)
T d2a5ja1 139 GLIFMETSAKTAC----------NVEEAFINTAKEI 164 (173)
T ss_dssp TCEEEEECTTTCT----------THHHHHHHHHHHH
T ss_pred CCEEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 4689999999998 9999998887654
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=3.6e-13 Score=140.73 Aligned_cols=156 Identities=17% Similarity=0.139 Sum_probs=102.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEec--CeEEEEEeCCCCCCc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN--GTRINIIDTPGHADF 998 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~iniiDTPGh~df 998 (1527)
+.++|+++|..|+|||||+++|+.... ... .....+... . ..+.++ .+.+.++||||..+|
T Consensus 3 k~~Kv~liG~~~vGKTsLl~~~~~~~f--~~~------------~~~t~~~~~-~--~~~~~~~~~~~l~i~d~~g~~~~ 65 (167)
T d1xtqa1 3 KSRKIAILGYRSVGKSSLTIQFVEGQF--VDS------------YDPTIENTF-T--KLITVNGQEYHLQLVDTAGQDEY 65 (167)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCC--CSC------------CCSSCCEEE-E--EEEEETTEEEEEEEEECCCCCTT
T ss_pred cceEEEEECCCCcCHHHHHHHHHhCCC--Ccc------------cCcceeccc-c--eEEecCcEEEEeeeccccccccc
Confidence 457899999999999999999986421 110 001111111 1 223333 467889999999999
Q ss_pred hHHHHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccc
Q psy1758 999 GGEVERILSMVDNVLLLIDAVEGPMPQTR-FVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEE 1073 (1527)
Q Consensus 999 ~~ev~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~ 1073 (1527)
.......++.+|++|+|+|.++...-+.. .++..+. ..++|+++|.||+|+...+.- ..++.+..-.
T Consensus 66 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v-~~~~~~~~a~------- 137 (167)
T d1xtqa1 66 SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI-SYEEGKALAE------- 137 (167)
T ss_dssp CCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCS-CHHHHHHHHH-------
T ss_pred ccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccch-hHHHHHHHHH-------
Confidence 87777788999999999999874322222 2222332 246899999999998643210 0122222211
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
...+|++.+||++|. |++++|+.++..+
T Consensus 138 ~~~~~~~e~Sak~~~----------~v~~~f~~li~~~ 165 (167)
T d1xtqa1 138 SWNAAFLESSAKENQ----------TAVDVFRRIILEA 165 (167)
T ss_dssp HHTCEEEECCTTCHH----------HHHHHHHHHHHHH
T ss_pred HcCCEEEEEecCCCC----------CHHHHHHHHHHHh
Confidence 224578999999998 9999999887653
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.34 E-value=1.9e-12 Score=135.62 Aligned_cols=157 Identities=20% Similarity=0.280 Sum_probs=103.3
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|..++|||||+++++... +... .+...+.. ..+...+....+.+++|||||+.++....
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~~~--~~~~------------~~~t~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~~~~ 69 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQKI--FVPD------------YDPTIEDS-YLKHTEIDNQWAILDVLDTAGQEEFSAMR 69 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS--CCTT------------CCTTCCEE-EEEEEEETTEEEEEEEEECCSCGGGCSSH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC--CCcc------------cCcceeec-cccccccccccccccccccccccccccch
Confidence 579999999999999999998642 1110 00011111 11222233344788999999999999988
Q ss_pred HHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
...++.+|++++|+|.++...- ....++.... ..++|.|++.||+|+...+.- ..++..+.... .++
T Consensus 70 ~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v-~~e~~~~~~~~-------~~~ 141 (169)
T d1x1ra1 70 EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKV-TRDQGKEMATK-------YNI 141 (169)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCS-CHHHHHHHHHH-------HTC
T ss_pred hhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhcee-ehhhHHHHHHH-------cCC
Confidence 8999999999999999874222 2223333332 347899999999998765421 11223322222 245
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
|++.+||++|. .|++++|+.+++.+
T Consensus 142 ~~~e~Sak~~~---------~nV~~~F~~l~~~i 166 (169)
T d1x1ra1 142 PYIETSAKDPP---------LNVDKTFHDLVRVI 166 (169)
T ss_dssp CEEEEBCSSSC---------BSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCC---------cCHHHHHHHHHHHH
Confidence 79999999872 18899999887654
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=3.3e-13 Score=143.39 Aligned_cols=166 Identities=16% Similarity=0.075 Sum_probs=104.5
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|.+|+|||||+++|+...-.-...+ + -+.. ...........+.+++||++|+..|...
T Consensus 5 ~iKivviG~~~vGKTsli~~~~~~~f~~~~~~----t----------i~~~-~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 69 (183)
T d1mh1a_ 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP----T----------VFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRL 69 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCC----C----------SCCE-EEEEEEETTEEEEEEEECCCCSGGGTTT
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCccccc----c----------eeec-eeeeeeccCcceEEEeecccccccchhh
Confidence 45799999999999999999986421100000 0 0111 1111223334567899999999999998
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHH-H--HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcc------c
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQ-TRFVTRKA-L--KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA------T 1071 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~-~--~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~------~ 1071 (1527)
...+++.+|++++|+|+++...-+ ....|... . ..++|+++|.||+|+...+ .+.+........... .
T Consensus 70 ~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~ 147 (183)
T d1mh1a_ 70 RPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK--DTIEKLKEKKLTPITYPQGLAM 147 (183)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH--HHHHHHHHTTCCCCCHHHHHHH
T ss_pred hhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhh--hhhhhhhhccccchhhHHHHHH
Confidence 888899999999999998632222 12222222 2 2368999999999985432 222222211100000 0
Q ss_pred -ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1072 -EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1072 -~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
.....++++.+||++|. |++++|+.+++.+-.|
T Consensus 148 a~~~~~~~~~E~SAk~~~----------~V~e~F~~l~~~il~p 181 (183)
T d1mh1a_ 148 AKEIGAVKYLECSALTQR----------GLKTVFDEAIRAVLCP 181 (183)
T ss_dssp HHHTTCSEEEECCTTTCT----------THHHHHHHHHHHHSCC
T ss_pred HHHcCCceEEEcCCCCCc----------CHHHHHHHHHHHHcCC
Confidence 00112679999999998 9999999998865333
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.33 E-value=3.2e-12 Score=134.24 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=105.5
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|.+|+|||||+++|....-. +.....+ .....+...+..+.++|++|+..+...
T Consensus 15 ~~kI~vvG~~~~GKSsLi~rl~~~~~~---------------~~~~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~ 75 (177)
T d1zj6a1 15 EHKVIIVGLDNAGKTTILYQFSMNEVV---------------HTSPTIG----SNVEEIVINNTRFLMWDIGGQESLRSS 75 (177)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCE---------------EEECCSC----SSCEEEEETTEEEEEEECCC----CGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC---------------ccccccc----eeEEEEeecceEEEEeccccccccccc
Confidence 368999999999999999999764211 0011111 123445567899999999999998888
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQT-RFVTRKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
....+..++++++++|.++...... ...+.... ..+.|.++|.||+|++.+.... ++.+.+..... ....
T Consensus 76 ~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~---~i~~~~~~~~~--~~~~ 150 (177)
T d1zj6a1 76 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVA---EISQFLKLTSI--KDHQ 150 (177)
T ss_dssp GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHH---HHHHHHTGGGC--CSSC
T ss_pred hhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHH---HHHHHHHHHhh--HhcC
Confidence 8889999999999999986433322 22222222 2478999999999998765432 22332221111 1235
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
++++.+||++|. |+++++++|.+.+
T Consensus 151 ~~~~~~Sa~tg~----------Gi~e~~~~L~~~l 175 (177)
T d1zj6a1 151 WHIQACCALTGE----------GLCQGLEWMMSRL 175 (177)
T ss_dssp EEEEECBTTTTB----------THHHHHHHHHHHH
T ss_pred CEEEEEeCCCCC----------CHHHHHHHHHHHh
Confidence 689999999998 9999999998875
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=2.3e-12 Score=135.51 Aligned_cols=160 Identities=19% Similarity=0.215 Sum_probs=106.2
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG 999 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~ 999 (1527)
+.+.+|+++|.+|+|||||++++++..-.-. .....+.+.........-..+.+.+|||||..++.
T Consensus 4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~ 69 (174)
T d1wmsa_ 4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQ--------------LFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFR 69 (174)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC------------------CCSEEEEEEEEEETTEEEEEEEEECCCCGGGH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCc--------------cccceeeeeeeeeeeecCceeeEeeecccCcceeh
Confidence 4567899999999999999999986421100 11122333333322222234678899999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHHH-------cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQTRFVT-RKALK-------LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCAT 1071 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~~-------~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~ 1071 (1527)
......+..+|+++++.|.+....-+....| ....+ .++|+++|.||+|+..... ..++++....+.
T Consensus 70 ~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v--~~~~~~~~~~~~--- 144 (174)
T d1wmsa_ 70 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQV--STEEAQAWCRDN--- 144 (174)
T ss_dssp HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSS--CHHHHHHHHHHT---
T ss_pred hhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccC--cHHHHHHHHHHc---
Confidence 9999999999999999999864322222222 22221 3689999999999865321 122333322221
Q ss_pred ccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1072 EEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1072 ~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..+|++.+||++|. |++++|+.+++.+
T Consensus 145 ---~~~~~~e~Sak~~~----------gI~e~f~~l~~~i 171 (174)
T d1wmsa_ 145 ---GDYPYFETSAKDAT----------NVAAAFEEAVRRV 171 (174)
T ss_dssp ---TCCCEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred ---CCCeEEEEcCCCCc----------CHHHHHHHHHHHH
Confidence 24679999999998 9999999988754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=7.5e-13 Score=138.31 Aligned_cols=158 Identities=19% Similarity=0.164 Sum_probs=99.3
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|.+++|||||+++++... +.. ......+.....+..........+++|||+|..++...
T Consensus 3 ~fKivlvG~~~vGKTsLi~r~~~~~--f~~------------~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 68 (167)
T d1z08a1 3 SFKVVLLGEGCVGKTSLVLRYCENK--FND------------KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL 68 (167)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC--CCS------------SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC------
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCC--CCc------------ccccccccchheeeeccCCccceeeeeccCCcceeccc
Confidence 3589999999999999999998542 111 01111233333333333333478999999999999888
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHH---HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQT-RFVTRKAL---KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~---~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
....++.+|++|+|+|.++...-+. ...+.... ....|.++|.||+|+...+.- ..++.+... ...++
T Consensus 69 ~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v-~~~e~~~~a-------~~~~~ 140 (167)
T d1z08a1 69 GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHV-SIQEAESYA-------ESVGA 140 (167)
T ss_dssp -CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCS-CHHHHHHHH-------HHTTC
T ss_pred chhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeecccccccccccc-chHHHHHHH-------HHcCC
Confidence 8888999999999999987432222 22333322 346777888999998654310 122222221 12346
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
|++.+||++|. |++++|+.|++.+
T Consensus 141 ~~~e~Sak~~~----------~v~e~F~~l~~~i 164 (167)
T d1z08a1 141 KHYHTSAKQNK----------GIEELFLDLCKRM 164 (167)
T ss_dssp EEEEEBTTTTB----------SHHHHHHHHHHHH
T ss_pred eEEEEecCCCc----------CHHHHHHHHHHHH
Confidence 89999999998 9999999998765
|
| >d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: EF-G/eEF-2 domains III and V domain: Elongation factor 2 (eEF-2) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.32 E-value=1.7e-12 Score=117.02 Aligned_cols=72 Identities=24% Similarity=0.399 Sum_probs=64.2
Q ss_pred CCceeEEEEecCCCCCCCCCccccHHHHHHHHHHHHhcCCceEEEecCCCCCeEEEEecchhHHHHHHHHHHh-c-CcEE
Q psy1758 1222 EPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRR-E-GYEL 1299 (1527)
Q Consensus 1222 ~P~l~~~~~~~~~p~~g~e~~~~~~~~l~~~L~~~~~~d~sl~v~~~~~~~~g~~v~g~GelhL~vl~e~lrr-e-g~ev 1299 (1527)
.|++++++.|.+. + +.++|.++|.++.++||||+++.+ ++|+ ++++|||||||+|+++||+| + |+|+
T Consensus 5 ~Pv~~~aiep~~~---~------d~~kL~~aL~kl~~eDpsl~v~~~-etge-~il~G~GelHLev~~~rL~~~f~~vev 73 (79)
T d1n0ua4 5 SPVVQVAVEVKNA---N------DLPKLVEGLKRLSKSDPCVLTYMS-ESGE-HIVAGTGELHLEICLQDLEHDHAGVPL 73 (79)
T ss_dssp SCCEEEEEEESSG---G------GHHHHHHHHHHHHHHCTTCEEEEC-TTSC-EEEEESSHHHHHHHHHHHHHTTSCSCE
T ss_pred CCEEEEEEEECCH---H------HHHHHHHHHHHHHHhCCcEEEEEc-CCCC-cEEecCCHHHHHHHHHHHHHHhCCceE
Confidence 5999999998653 1 458999999999999999999765 6899 99999999999999999985 5 9999
Q ss_pred EEecC
Q psy1758 1300 SVSRP 1304 (1527)
Q Consensus 1300 ~vs~P 1304 (1527)
.+++|
T Consensus 74 ~~~~P 78 (79)
T d1n0ua4 74 KISPP 78 (79)
T ss_dssp EEECC
T ss_pred EeCCC
Confidence 99998
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=2.5e-12 Score=134.29 Aligned_cols=157 Identities=15% Similarity=0.186 Sum_probs=104.7
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|.+++|||||+++++... +... .....|... ............+.+||++|+..+....
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~--f~~~------------~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~ 68 (167)
T d1c1ya_ 4 YKLVVLGSGGVGKSALTVQFVQGI--FVEK------------YDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMR 68 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC--CCCS------------CCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCc------------cCCcccccc-ceeEEeeeeEEEeccccccCcccccccc
Confidence 479999999999999999998652 1110 001111111 1111222344689999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
..+++.+|++|+|+|+++...- .....+..+.+ .++|.++|.||+|+...+... .++......+. ..+
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~-~~~~~~~~~~~------~~~ 141 (167)
T d1c1ya_ 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVG-KEQGQNLARQW------CNC 141 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSC-HHHHHHHHHHT------TSC
T ss_pred cccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccc-hhHHHHHHHHh------CCC
Confidence 9999999999999999874322 22334444433 357889999999986543211 12222222111 246
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
|++.+||++|. |++++|+.+++.+
T Consensus 142 ~~~e~Sak~g~----------gv~e~F~~l~~~i 165 (167)
T d1c1ya_ 142 AFLESSAKSKI----------NVNEIFYDLVRQI 165 (167)
T ss_dssp EEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred EEEEEcCCCCc----------CHHHHHHHHHHHh
Confidence 78999999998 9999999998754
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.32 E-value=2.4e-13 Score=150.67 Aligned_cols=118 Identities=23% Similarity=0.140 Sum_probs=82.8
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHhc-----CEEEEEEeCCCCCChhHHHHHHHH-----HHcCCccEEEEeccCCCCCC
Q psy1758 984 GTRINIIDTPGHADFGGEVERILSMV-----DNVLLLIDAVEGPMPQTRFVTRKA-----LKLGFKPIVVVNKIDRSNAR 1053 (1527)
Q Consensus 984 ~~~iniiDTPGh~df~~ev~~~l~~a-----D~ailVVDa~~G~~~qt~~~~~~~-----~~~glp~IvviNKiD~~~a~ 1053 (1527)
...+.++|||||.++...+.+....+ +.+++++|+..+.++|+....... .+.++|.++|+||+|+..++
T Consensus 94 ~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~ 173 (244)
T d1yrba1 94 ENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 173 (244)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred ccceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHH
Confidence 45699999999999888777765544 479999999999999987655443 34689999999999998754
Q ss_pred hhhhHHHHHHHHhh----hc----------------ccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1054 PEWVVDATFDLFDK----LC----------------ATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1054 ~~~v~~~~~~~~~~----l~----------------~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.........+.+.. +. ..+....+|++++||++|. |+++|++.|.+++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~ge----------Gi~~L~~~l~e~~ 241 (244)
T d1yrba1 174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTRE----------GFEDLETLAYEHY 241 (244)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCT----------THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCC----------CHHHHHHHHHHHh
Confidence 32222111111100 00 0011235789999999998 9999999987753
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.29 E-value=1e-12 Score=145.48 Aligned_cols=113 Identities=19% Similarity=0.142 Sum_probs=79.8
Q ss_pred EEEEEeCCChhhHHHHHHhhcc-----ccCEEEEEEeCCCCCcHHHHHHHHHH-----HHcCCCEEEEEEcccCCcchhH
Q psy1758 117 SITFLDTPGHEAFTAMRARGAK-----VTDIVVLVVAADDGVMPQTREAIAHA-----KISGVPLIVAINKIDKLDINLD 186 (1527)
Q Consensus 117 ~i~~iDTPG~e~f~~~~~~~~~-----~aD~~IlVvda~~g~~~qt~e~i~~~-----~~~~vpiIvviNKiDl~~~~~~ 186 (1527)
.+.++|||||..+...+....+ ..+++++++|+..+..++........ ...+.|.++++||+|+...+..
T Consensus 96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~~~ 175 (244)
T d1yrba1 96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEK 175 (244)
T ss_dssp SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHH
T ss_pred ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHHHH
Confidence 4899999999888766555433 35689999999999998887654432 3468899999999999875432
Q ss_pred HHHHHH-----------hh-----------hcccccccCCCCcEEEeeccCCCChhHHHHHHHHH
Q psy1758 187 RIKQDL-----------IS-----------EQVIPEEYGGASPFISISAKTGVGINKLLENISLQ 229 (1527)
Q Consensus 187 ~~~~~l-----------~~-----------~~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~ 229 (1527)
...... .. ......++...+|++++||++|+|+++|++.|.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~ 240 (244)
T d1yrba1 176 ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 240 (244)
T ss_dssp HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 221100 00 00011234556899999999999999999988653
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.29 E-value=3.9e-12 Score=137.65 Aligned_cols=115 Identities=20% Similarity=0.243 Sum_probs=75.9
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEE-EecCeEEEEEeCCCCCCchHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSI-EYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~-~~~~~~iniiDTPGh~df~~e 1001 (1527)
|||+|+|++|+|||||+++|+...-... ....+.+.. ...+ ...+..+.++||||+..|...
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~---------------~~t~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~ 63 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDT---------------QTSITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQ 63 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCB---------------CCCCSCEEE--EEECSSTTCCEEEEEECCCCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc---------------cCCeeEEEE--EEEEeeeeeeeeeeeeccccccccch
Confidence 6899999999999999999986521110 011122221 1111 234678999999999998654
Q ss_pred H-HHHHHhcCEEEEEEeCCCCCCh---hHHHHHHHHH-----HcCCccEEEEeccCCCCCCh
Q psy1758 1002 V-ERILSMVDNVLLLIDAVEGPMP---QTRFVTRKAL-----KLGFKPIVVVNKIDRSNARP 1054 (1527)
Q Consensus 1002 v-~~~l~~aD~ailVVDa~~G~~~---qt~~~~~~~~-----~~glp~IvviNKiD~~~a~~ 1054 (1527)
. ...+..+|++++|+|+++.... ....+...+. ..++|++||+||+|++++..
T Consensus 64 ~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~ 125 (207)
T d2fh5b1 64 LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS 125 (207)
T ss_dssp HHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC
T ss_pred hhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCC
Confidence 4 5566999999999999864321 1122222222 13578888999999988754
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=2.9e-12 Score=131.93 Aligned_cols=155 Identities=19% Similarity=0.181 Sum_probs=108.0
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|.+|+|||||+++|++..- .. .+.|+........+.+..+.++||+|+..+.....
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~--~~-----------------~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRL--AT-----------------LQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK 62 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC--CC-----------------CCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--Ce-----------------eeceeeEeEEEeccCCeeEEEEeeccchhhhhhHh
Confidence 699999999999999999986521 10 11233333455667788999999999999988888
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHHHH-HHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcc-----ccc
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQTRFV-TRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA-----TEE 1073 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~qt~~~-~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~-----~~~ 1073 (1527)
..+..++++++++|.++......... +..... ...|++++.||+|++.+.. ..++.+.+..... ...
T Consensus 63 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~---~~~i~~~~~~~~~~~~~~~~~ 139 (166)
T d2qtvb1 63 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS---EAELRSALGLLNTTGSQRIEG 139 (166)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCC---HHHHHHHHTCSSCCC---CCS
T ss_pred hhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCC---HHHHHHHhhhhhhhHHHhhcc
Confidence 88999999999999987544433322 222222 4678889999999976542 2222222211111 112
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
...++++.+||++|. |++++|++|.+|
T Consensus 140 ~~~~~~~~~SA~tg~----------Gv~e~~~~l~~~ 166 (166)
T d2qtvb1 140 QRPVEVFMCSVVMRN----------GYLEAFQWLSQY 166 (166)
T ss_dssp SCCEEEEEEBTTTTB----------SHHHHHHHHTTC
T ss_pred cCCCEEEEeeCCCCC----------CHHHHHHHHhCC
Confidence 234679999999999 999999998764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.5e-11 Score=128.43 Aligned_cols=156 Identities=21% Similarity=0.226 Sum_probs=97.6
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|..++|||||+++++... +... .++.-|..... ........+.+++|||||...|. ..
T Consensus 3 iKi~lvG~~~vGKTsli~r~~~~~--f~~~------------~~pTi~~~~~~-~~~~~~~~~~l~i~D~~g~~~~~-~~ 66 (168)
T d2atva1 3 VKLAIFGRAGVGKSALVVRFLTKR--FIWE------------YDPTLESTYRH-QATIDDEVVSMEILDTAGQEDTI-QR 66 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC--CCSC------------CCTTCCEEEEE-EEEETTEEEEEEEEECCCCCCCH-HH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC--CCCc------------cCCceeccccc-cccccccceEEEEeecccccccc-cc
Confidence 479999999999999999998642 1110 00111222211 11112223678999999998884 55
Q ss_pred HHHHHhcCEEEEEEeCCCCCChhHH-HHHHHH---H-HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCC
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMPQTR-FVTRKA---L-KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDF 1077 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~qt~-~~~~~~---~-~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~ 1077 (1527)
...++.+|++++|+|.++....+.. ..+... . ..+.|.++|.||+|+...+.- ..++.++... ...+
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V-~~~e~~~~a~-------~~~~ 138 (168)
T d2atva1 67 EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQV-STEEGEKLAT-------ELAC 138 (168)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCS-CHHHHHHHHH-------HHTS
T ss_pred hhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccC-cHHHHHHHHH-------HhCC
Confidence 6688999999999999874322222 111221 1 246899999999998643210 1122222211 2246
Q ss_pred cEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1078 PVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1078 pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
|++.+||++|. .+++++|..+++.+
T Consensus 139 ~~~e~Saktg~---------gnV~e~F~~l~~~i 163 (168)
T d2atva1 139 AFYECSACTGE---------GNITEIFYELCREV 163 (168)
T ss_dssp EEEECCTTTCT---------TCHHHHHHHHHHHH
T ss_pred eEEEEccccCC---------cCHHHHHHHHHHHH
Confidence 79999999996 13889998887654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=4.1e-12 Score=135.76 Aligned_cols=165 Identities=15% Similarity=0.112 Sum_probs=103.0
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|.+++|||||+++++... +.... ...-|.. .........+.+.++||||||+.+|...
T Consensus 3 ~iKvvllG~~~vGKTSli~r~~~~~--f~~~~------------~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 67 (191)
T d2ngra_ 3 TIKCVVVGDGAVGKTCLLISYTTNK--FPSEY------------VPTVFDN-YAVTVMIGGEPYTLGLFDTAGQEDYDRL 67 (191)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC--CCSSC------------CCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTT
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCC--CCCCc------------CCceeee-cceeEeeCCceeeeeccccccchhhhhh
Confidence 3589999999999999999998642 11100 0001111 1111111223457999999999999988
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHH-H--cCCccEEEEeccCCCCCChhhhHHHHHHH---------Hhhh
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQT-RFVTRKAL-K--LGFKPIVVVNKIDRSNARPEWVVDATFDL---------FDKL 1068 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~-~--~glp~IvviNKiD~~~a~~~~v~~~~~~~---------~~~l 1068 (1527)
...+++.+|++++|+|.++.-.-+. ...|.... . .+.|.++|.||+|+..... ..+++... -.++
T Consensus 68 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~ 145 (191)
T d2ngra_ 68 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS--TIEKLAKNKQKPITPETAEKL 145 (191)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHH--HHHHHHTTTCCCCCHHHHHHH
T ss_pred hhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccch--hhhhhhhcccccccHHHHHHH
Confidence 8888999999999999987422122 12232222 2 3788999999999864321 11111000 0000
Q ss_pred cccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCCC
Q psy1758 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHK 1115 (1527)
Q Consensus 1069 ~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p~ 1115 (1527)
.. ....++++.+||++|. |++++|+.++..+..|.
T Consensus 146 ~~--~~~~~~~~e~SAk~~~----------~V~e~f~~l~~~~~~~~ 180 (191)
T d2ngra_ 146 AR--DLKAVKYVECSALTQK----------GLKNVFDEAILAALEPP 180 (191)
T ss_dssp HH--HTTCSCEEECCTTTCT----------THHHHHHHHHHHHTSCC
T ss_pred HH--HcCCCeEEEEeCCCCc----------CHHHHHHHHHHHHhcCc
Confidence 00 0113578999999998 99999999988765443
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.26 E-value=6.6e-12 Score=130.53 Aligned_cols=157 Identities=20% Similarity=0.224 Sum_probs=102.2
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
+.+|+++|..|+|||||+++++...-... .....+.+.......+......+.++|++|...+...
T Consensus 2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (165)
T d1z06a1 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDR--------------TEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKS 67 (165)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSS--------------CCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTT
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCc--------------cCcccccccceeeeeeeccceEEEEEeccCchhhccc
Confidence 56899999999999999999986421110 1122334444444455556678999999998776554
Q ss_pred -HHHHHHhcCEEEEEEeCCCCCCh-hHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhccccccc
Q psy1758 1002 -VERILSMVDNVLLLIDAVEGPMP-QTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQL 1075 (1527)
Q Consensus 1002 -v~~~l~~aD~ailVVDa~~G~~~-qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~ 1075 (1527)
...+++.+|++|+|+|.++...- .....+..+.+ .++|.++|.||+|+...+. -..++..... ...
T Consensus 68 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~-v~~~~~~~~~-------~~~ 139 (165)
T d1z06a1 68 MVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQ-VPTDLAQKFA-------DTH 139 (165)
T ss_dssp THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC-SCHHHHHHHH-------HHT
T ss_pred cceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccc-hhHHHHHHHH-------HHC
Confidence 45678999999999999874222 22334444433 3678999999999865321 0112222211 123
Q ss_pred CCcEEEeccccCCcCCCcccccCCChhHHHHH
Q psy1758 1076 DFPVIYTSALHGYANENSKARQGNMIPLFEAI 1107 (1527)
Q Consensus 1076 ~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i 1107 (1527)
++|++.+||++|.... |++++|+.|
T Consensus 140 ~~~~~e~SAkt~~~~~-------~V~e~F~~l 164 (165)
T d1z06a1 140 SMPLFETSAKNPNDND-------HVEAIFMTL 164 (165)
T ss_dssp TCCEEECCSSSGGGGS-------CHHHHHHHH
T ss_pred CCEEEEEecccCCcCc-------CHHHHHHHh
Confidence 4679999999875322 788888776
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.26 E-value=1.2e-11 Score=127.97 Aligned_cols=157 Identities=17% Similarity=0.101 Sum_probs=110.4
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
-.+|+|+|.+|+|||||+++++...-. . . ..|.......+..+++.+.++|+||+..+...
T Consensus 5 e~kI~ivG~~~vGKSSLi~~~~~~~~~--~-------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (169)
T d1upta_ 5 EMRILILGLDGAGKTTILYRLQVGEVV--T-------------T----IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPY 65 (169)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC--C-------------C----CCCSSEEEEEEEETTEEEEEEEECCCGGGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc--c-------------e----ecccceeeeeeccCceEEEEeecccccccccc
Confidence 367999999999999999999865211 0 0 11222333456678899999999999999988
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHH----HcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccC
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTRFVT-RKAL----KLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLD 1076 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~~~~-~~~~----~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~ 1076 (1527)
.......++++++++|.......+....+ .... ....|.+++.||.|+....... ++...+... ......
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~---~i~~~~~~~--~~~~~~ 140 (169)
T d1upta_ 66 WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSS---EMANSLGLP--ALKDRK 140 (169)
T ss_dssp GGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH---HHHHHHTGG--GCTTSC
T ss_pred chhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHH---HHHHHHHHH--HHhcCC
Confidence 88889999999999999875555443322 2222 2356778899999997654321 222222111 112235
Q ss_pred CcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1077 FPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1077 ~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
+|++++||++|. |++++++.|.+.+.
T Consensus 141 ~~~~~~SA~~g~----------gv~e~~~~l~~~l~ 166 (169)
T d1upta_ 141 WQIFKTSATKGT----------GLDEAMEWLVETLK 166 (169)
T ss_dssp EEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 789999999998 99999999988763
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.3e-11 Score=129.97 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=95.3
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|+++|+.++|||||+++++... +..... ..+.+. .+...++...+.+.||||||+.++.
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~~--f~~~~~-------------t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~~-- 66 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTGS--YQVLEK-------------TESEQY-KKEMLVDGQTHLVLIREEAGAPDAK-- 66 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHSC--CCCCCC-------------SSCEEE-EEEEEETTEEEEEEEEECSSCCCHH--
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCC--CCCcCC-------------ccceeE-EEEeecCceEEEEEEeecccccccc--
Confidence 3689999999999999999998652 111110 111111 1222232334678999999998753
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHH-HHHHHH------HcCCccEEEEeccCCCCCChhhhH-HHHHHHHhhhccccc
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTRF-VTRKAL------KLGFKPIVVVNKIDRSNARPEWVV-DATFDLFDKLCATEE 1073 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~~-~~~~~~------~~glp~IvviNKiD~~~a~~~~v~-~~~~~~~~~l~~~~~ 1073 (1527)
.++.+|++|+|+|.++.-.-+... +...+. ...+|+++|.||.|+.......+. ++......+.
T Consensus 67 ---~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~----- 138 (175)
T d2bmja1 67 ---FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADM----- 138 (175)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTS-----
T ss_pred ---cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHh-----
Confidence 688999999999998732222222 222222 134688899988887543322121 1222221111
Q ss_pred ccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1074 QLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1074 ~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
..++++.+||++|. |++++|..+++.+
T Consensus 139 -~~~~~~e~SAk~~~----------~v~~~F~~l~~~i 165 (175)
T d2bmja1 139 -KRCSYYETCATYGL----------NVDRVFQEVAQKV 165 (175)
T ss_dssp -TTEEEEEEBTTTTB----------THHHHHHHHHHHH
T ss_pred -CCCeEEEeCCCCCc----------CHHHHHHHHHHHH
Confidence 23578999999998 9999998887654
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=4.7e-12 Score=132.97 Aligned_cols=156 Identities=18% Similarity=0.187 Sum_probs=94.7
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCC---CCCch
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPG---HADFG 999 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPG---h~df~ 999 (1527)
.+|+++|..++|||||++++............ ..|.....+...+..+.+.+.+||+|| +.+|.
T Consensus 4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~-------------t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~ 70 (172)
T d2g3ya1 4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-------------VLGEDTYERTLMVDGESATIILLDMWENKGENEWL 70 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC----------------CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCcCCcccccc-------------ceeeecceeeeccCCceeeeeeecccccccccccc
Confidence 57999999999999999999754222111100 011111222222333345678888775 33342
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccc
Q psy1758 1000 GEVERILSMVDNVLLLIDAVEGPMPQT-RFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQ 1074 (1527)
Q Consensus 1000 ~ev~~~l~~aD~ailVVDa~~G~~~qt-~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~ 1074 (1527)
...+++.+|++|+|+|.++...-.. ..++..... .++|.++|.||+|+...+.- ..++.+. +. ..
T Consensus 71 --~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v-~~~~~~~-~a------~~ 140 (172)
T d2g3ya1 71 --HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREV-SVSEGRA-CA------VV 140 (172)
T ss_dssp --HHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCS-CHHHHHH-HH------HH
T ss_pred --ccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccc-cHHHHHH-HH------HH
Confidence 2334688999999999987322221 222333332 36899999999998654311 1222222 11 11
Q ss_pred cCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1075 LDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1075 ~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.++|++.+||++|. |++++|+.+++.+
T Consensus 141 ~~~~~~e~Sak~g~----------~i~~~f~~l~~~i 167 (172)
T d2g3ya1 141 FDCKFIETSAAVQH----------NVKELFEGIVRQV 167 (172)
T ss_dssp HTCEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCc----------CHHHHHHHHHHHH
Confidence 24689999999998 9999999998765
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.20 E-value=1.8e-11 Score=128.71 Aligned_cols=162 Identities=18% Similarity=0.212 Sum_probs=105.2
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
+..+|+++|.+|+|||||+++|.+..- . ... .|.......+.+++..++.+|++|+.++..
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~~--~-------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDRL--G-------------QHV----PTLHPTSEELTIAGMTFTTFDLGGHIQARR 72 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------------------------CCCCCSCEEEEETTEEEEEEEECC----CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC--c-------------cee----cccccceeEEEecccccccccccchhhhhh
Confidence 345799999999999999999975411 0 001 122223345677889999999999999888
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCC-hhHHHHHHHHHH----cCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcc-----
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPM-PQTRFVTRKALK----LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCA----- 1070 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~-~qt~~~~~~~~~----~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~----- 1070 (1527)
.........+++++++|.++... .+....+..... .+.|.+++.||.|++.+-....+.+..+.......
T Consensus 73 ~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~ 152 (186)
T d1f6ba_ 73 VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVS 152 (186)
T ss_dssp GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCC
T ss_pred HHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhh
Confidence 88888999999999999886422 223333332222 36899999999999876433322222221111000
Q ss_pred --cccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1071 --TEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1071 --~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
......++++++||++|. |++++|++|.+++
T Consensus 153 ~~~~~~~~~~~~~~SA~tg~----------Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 153 LKELNARPLEVFMCSVLKRQ----------GYGEGFRWMAQYI 185 (186)
T ss_dssp TTTCCSCCEEEEECBTTTTB----------SHHHHHHHHHTTC
T ss_pred HHHhhcCCCEEEEEeCCCCC----------CHHHHHHHHHHhh
Confidence 011124578999999999 9999999998875
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.19 E-value=1e-11 Score=135.93 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=82.8
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEe
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVA 148 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvd 148 (1527)
..+|+++|..|||||||+++|....+. |++. +....+..++..+.+||++|++.+...+..++..++++++|+|
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~~----pTiG--~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d 79 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHVV----LTSG--IFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVA 79 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHCC----CCCS--CEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEE
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCcC----CCCC--eEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEE
Confidence 468999999999999999999765543 2222 3445567888999999999999999999999999999999999
Q ss_pred CCCCC-----------cHHHHHHHHHHH----HcCCCEEEEEEcccCCc
Q psy1758 149 ADDGV-----------MPQTREAIAHAK----ISGVPLIVAINKIDKLD 182 (1527)
Q Consensus 149 a~~g~-----------~~qt~e~i~~~~----~~~vpiIvviNKiDl~~ 182 (1527)
.++.. ..+..+.+..+. ..++|++|++||+|+..
T Consensus 80 ~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~ 128 (221)
T d1azta2 80 SSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 128 (221)
T ss_dssp TTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhh
Confidence 88621 112223333222 24689999999999864
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.18 E-value=4.2e-11 Score=142.28 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=101.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcccc-----ccccCCceeEEEEEEEEEeCCeEEEEEeCCChhhH-----HHHHHhh
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNV-----VFSEAGGITQHIGAYNVVTNHGSITFLDTPGHEAF-----TAMRARG 136 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~-----~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~e~f-----~~~~~~~ 136 (1527)
..+.+|+|+|.+|+|||||+|+|++... ......++|++...+.. .++..+.||||||.... ..+....
T Consensus 54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~-~~~~~~~l~DtPG~~~~~~~~~~~~~~~~ 132 (400)
T d1tq4a_ 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMK 132 (400)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeec-cCCCeEEEEeCCCcccccccHHHHHHHhh
Confidence 4568899999999999999999997543 22233456776655432 34447999999994221 1223345
Q ss_pred ccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcch----------hHHHHHHHhhh--cccccccCC
Q psy1758 137 AKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDIN----------LDRIKQDLISE--QVIPEEYGG 204 (1527)
Q Consensus 137 ~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~----------~~~~~~~l~~~--~~~~~~~~~ 204 (1527)
+..+|+++++.| .....+..+.+..+...+.|+++|.||+|....+ .++....+... .........
T Consensus 133 ~~~~d~~l~~~~--~~~~~~d~~l~~~l~~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~~~ 210 (400)
T d1tq4a_ 133 FYEYDFFIIISA--TRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 210 (400)
T ss_dssp GGGCSEEEEEES--SCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hhcceEEEEecC--CCCCHHHHHHHHHHHHcCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcCCC
Confidence 677888888776 4567888899999999999999999999964211 11111111110 000011112
Q ss_pred CCcEEEeeccC--CCChhHHHHHHHH
Q psy1758 205 ASPFISISAKT--GVGINKLLENISL 228 (1527)
Q Consensus 205 ~~~v~~iSAkt--g~gI~eL~~~l~~ 228 (1527)
..++|.+|+.. ..|+++|.+.+..
T Consensus 211 ~~~vflvS~~~~~~~d~~~L~~~l~~ 236 (400)
T d1tq4a_ 211 EPPIFLLSNKNVCHYDFPVLMDKLIS 236 (400)
T ss_dssp SCCEEECCTTCTTSTTHHHHHHHHHH
T ss_pred CCCEEEecCCcccccCHHHHHHHHHH
Confidence 34789999765 4589999998863
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.16 E-value=2.5e-11 Score=144.18 Aligned_cols=171 Identities=12% Similarity=0.079 Sum_probs=105.8
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..||||+|.+|+|||||+|+|++.......... ....++|.+..... ..++..+.||||||.......
T Consensus 56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~-----------~g~~~tT~~~~~~~-~~~~~~~~l~DtPG~~~~~~~ 123 (400)
T d1tq4a_ 56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAK-----------TGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFP 123 (400)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCC-----------CCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCC-----------CCCCCCceeeeeee-ccCCCeEEEEeCCCccccccc
Confidence 469999999999999999999865211100000 00122343332222 223456899999997653322
Q ss_pred HHHH-----HHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCC----------CCChhhhHHHHHHHHh
Q psy1758 1002 VERI-----LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS----------NARPEWVVDATFDLFD 1066 (1527)
Q Consensus 1002 v~~~-----l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~----------~a~~~~v~~~~~~~~~ 1066 (1527)
.+.+ +..+|.+|+++| ..+..+...+++.+.+.++|+++|+||+|.. ..+.+..++++++...
T Consensus 124 ~~~~~~~~~~~~~d~~l~~~~--~~~~~~d~~l~~~l~~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~ 201 (400)
T d1tq4a_ 124 PDTYLEKMKFYEYDFFIIISA--TRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCV 201 (400)
T ss_dssp HHHHHHHTTGGGCSEEEEEES--SCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcceEEEEecC--CCCCHHHHHHHHHHHHcCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHH
Confidence 2222 456777777666 4577888889999999999999999999952 1123455555554332
Q ss_pred hhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcCCC
Q psy1758 1067 KLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVH 1114 (1527)
Q Consensus 1067 ~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp~p 1114 (1527)
..-......+-|++.+|+.... ..|+..|.+.+.+.+|.-
T Consensus 202 ~~l~~~~~~~~~vflvS~~~~~--------~~d~~~L~~~l~~~L~~~ 241 (400)
T d1tq4a_ 202 NTFRENGIAEPPIFLLSNKNVC--------HYDFPVLMDKLISDLPIY 241 (400)
T ss_dssp HHHHHTTCSSCCEEECCTTCTT--------STTHHHHHHHHHHHSCGG
T ss_pred HHHHHcCCCCCCEEEecCCccc--------ccCHHHHHHHHHHHhHHH
Confidence 2111111123468888876432 227889999999999864
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.14 E-value=1.3e-11 Score=130.32 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=98.7
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHHH
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVE 1003 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev~ 1003 (1527)
+|+++|..++|||||+.+++... +..... ..-+ ........+....+.++||||||+..|.....
T Consensus 4 KivliG~~~vGKTsli~r~~~~~--f~~~~~------------~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 68 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDC--FPENYV------------PTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRP 68 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC--CCSSCC------------CCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGG
T ss_pred EEEEECCCCcCHHHHHHHHHhCC--CCCccC------------Ccee-ecccccccccceEEeecccccccccccccccc
Confidence 78999999999999999998642 111000 0001 11112222223346889999999999988777
Q ss_pred HHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH---cCCccEEEEeccCCCCCChhh----------h-HHHHHHHHhhh
Q psy1758 1004 RILSMVDNVLLLIDAVEGPMPQ-TRFVTRKALK---LGFKPIVVVNKIDRSNARPEW----------V-VDATFDLFDKL 1068 (1527)
Q Consensus 1004 ~~l~~aD~ailVVDa~~G~~~q-t~~~~~~~~~---~glp~IvviNKiD~~~a~~~~----------v-~~~~~~~~~~l 1068 (1527)
..++.+|++|||+|.++...-+ ....|..... .+.|.++|.||+|+....... + .++......+.
T Consensus 69 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~ 148 (179)
T d1m7ba_ 69 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 148 (179)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred chhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHh
Confidence 7889999999999998743212 2223333222 478999999999985432110 0 11111111111
Q ss_pred cccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1069 CATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1069 ~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+ ..+++.+||++|. .|++++|+.++..+
T Consensus 149 ~------~~~y~E~SAk~~~---------n~i~~~F~~~~~~~ 176 (179)
T d1m7ba_ 149 G------AATYIECSALQSE---------NSVRDIFHVATLAC 176 (179)
T ss_dssp T------CSEEEECBTTTBH---------HHHHHHHHHHHHHH
T ss_pred C------CCeEEEEeCCCCC---------cCHHHHHHHHHHHH
Confidence 1 2468899999996 14889999887653
|
| >d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.12 E-value=5.8e-11 Score=110.00 Aligned_cols=83 Identities=25% Similarity=0.384 Sum_probs=74.1
Q ss_pred CCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceeeeEeEeec---------------cCCceeeecCCCcce
Q psy1758 240 TTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLN---------------ENGKNILEAGPSIPV 304 (1527)
Q Consensus 240 ~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~kVr~i~~---------------~~g~~v~~a~~~~~v 304 (1527)
+.|++++|+|++.++++|.++++++++|+|++||.+++|..+++|++..+ .++++++++.|++++
T Consensus 2 d~~a~G~VlEs~~dkg~G~~atviv~~GtLk~GD~iv~g~~~G~i~~~iraLl~p~pl~emr~~~~~~~~vke~~aa~gV 81 (101)
T d1g7sa1 2 DSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGI 81 (101)
T ss_dssp TSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEE
T ss_pred CCCcEEEEEEEEEcCCCCeeEEEEEEcCEEccCCEEEEecCcCCEEEEeecccCCcchhhhhccccCCeECcEEeCCCce
Confidence 56899999999999999999999999999999999999998887765332 456789999999999
Q ss_pred Eec--CCCCCCCCCCeEEEeC
Q psy1758 305 EIQ--GLTKVPFSGEELFVIL 323 (1527)
Q Consensus 305 ~I~--gl~~~~~~G~~~~~~~ 323 (1527)
.|. ||..++ ||+.|++++
T Consensus 82 kI~a~gLe~v~-aG~~~~VV~ 101 (101)
T d1g7sa1 82 KIVAPGIDDVM-AGSPLRVVT 101 (101)
T ss_dssp EEECSSCTTBC-TTCEEEECS
T ss_pred EEEcCCCCcCC-CCCEEEEeC
Confidence 997 899997 999999874
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=3.4e-11 Score=128.87 Aligned_cols=159 Identities=15% Similarity=0.148 Sum_probs=105.6
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..+|.++|..++|||||+++|-... ....|+......+.+++..+.+|||+|+..+...
T Consensus 2 ~iKivllG~~~vGKTsll~r~~f~~---------------------~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~ 60 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMRIIH---------------------GQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKR 60 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH---------------------SCCCCSSEEEEEEEETTEEEEEEEECC-------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC---------------------CCCCeeeeEEEEEeeeeeeeeeecccceeeeccc
Confidence 4589999999999999999993210 0112344445678899999999999999999988
Q ss_pred HHHHHHhcCEEEEEEeCCCCCCh-----------hHHHHHHHHH----HcCCccEEEEeccCCCC---------------
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMP-----------QTRFVTRKAL----KLGFKPIVVVNKIDRSN--------------- 1051 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~-----------qt~~~~~~~~----~~glp~IvviNKiD~~~--------------- 1051 (1527)
+....+.++++++++|.++.... .....|.... ..+.|+++|.||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~ 140 (200)
T d1zcba2 61 WFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEF 140 (200)
T ss_dssp CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTC
T ss_pred ccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccc
Confidence 88889999999999999875432 1122222222 24789999999999631
Q ss_pred ----CChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1052 ----ARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1052 ----a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
.+.+...+.+.+.|..+........+...++||+++. +++.+|+++.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~----------ni~~vf~~v~d~i 194 (200)
T d1zcba2 141 EGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTE----------NIRLVFRDVKDTI 194 (200)
T ss_dssp CSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHH----------HHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcH----------HHHHHHHHHHHHH
Confidence 1334455556666655444333344556679999998 8888888876543
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=7.8e-11 Score=125.15 Aligned_cols=155 Identities=14% Similarity=0.150 Sum_probs=109.1
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|..++|||||+++|....- .+.|+ ....+.+.+.++.+|||+|+..|...+
T Consensus 3 ~KivllG~~~vGKTsl~~r~~~~~~-------------------~t~~~----~~~~~~~~~~~~~i~D~~Gq~~~~~~~ 59 (195)
T d1svsa1 3 VKLLLLGAGESGKSTIVKQMKIIHE-------------------AGTGI----VETHFTFKDLHFKMFDVGGQRSERKKW 59 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHS-------------------CCCSE----EEEEEEETTEEEEEEEECCSGGGGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-------------------CCccE----EEEEEEeeeeeeeeeccccccccccch
Confidence 4799999999999999999964311 01122 335677889999999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCCCh-----------hHHHHHHHHH----HcCCccEEEEeccCCC-----------------
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPMP-----------QTRFVTRKAL----KLGFKPIVVVNKIDRS----------------- 1050 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~~-----------qt~~~~~~~~----~~glp~IvviNKiD~~----------------- 1050 (1527)
..+++.+|++++|+|.++.... .....|.... ..+.|.+++.||+|+.
T Consensus 60 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~ 139 (195)
T d1svsa1 60 IHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYA 139 (195)
T ss_dssp GGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCC
T ss_pred hhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhc
Confidence 9999999999999998753111 1123333332 2367999999999952
Q ss_pred -CCChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhh
Q psy1758 1051 -NARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKY 1110 (1527)
Q Consensus 1051 -~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~ 1110 (1527)
..+..+....+...|.+.........++++++||++|. +++.+|+.+.+.
T Consensus 140 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~----------nv~~~F~~v~~~ 190 (195)
T d1svsa1 140 GSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTK----------NVQFVFDAVTDV 190 (195)
T ss_dssp SCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHH----------HHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCH----------hHHHHHHHHHHH
Confidence 11233333444455554444444445677889999998 899999887654
|
| >d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.00 E-value=4.5e-10 Score=104.58 Aligned_cols=87 Identities=20% Similarity=0.318 Sum_probs=75.9
Q ss_pred CCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ec
Q psy1758 1119 NNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TG 1196 (1527)
Q Consensus 1119 ~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~g 1196 (1527)
++||+|+|.+++..+..|+++.|+|.+|++++||.|.+++. ....+|.+|+.+. .++++|.|||.|++ .|
T Consensus 1 dkP~rmpI~~vf~i~g~GtVvtG~v~~G~i~~Gd~v~i~P~----~~~~~VksI~~~~----~~~~~a~aG~~v~l~l~~ 72 (94)
T d1f60a1 1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPA----GVTTEVKSVEMHH----EQLEQGVPGDNVGFNVKN 72 (94)
T ss_dssp TSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETT----TEEEEEEEEEETT----EECSCBCTTCEEEEEESS
T ss_pred CCCEEEEEEEEEEeCCeeEEEEEeeecccCCCCCEEEECcC----CceEEEEEEEEcC----cCcCEecCCCeEEEEEeC
Confidence 57999999999999999999999999999999999999987 3467899988664 67999999999976 56
Q ss_pred ce--ecccCCeeeCCCCCC
Q psy1758 1197 IE--EICIGSTICDPSKPN 1213 (1527)
Q Consensus 1197 l~--~~~iGdTi~~~~~~~ 1213 (1527)
++ ++..|+.||+++++.
T Consensus 73 i~~~~i~rG~vl~~~~~~p 91 (94)
T d1f60a1 73 VSVKEIRRGNVCGDAKNDP 91 (94)
T ss_dssp CCTTTSCTTCEEEETTSSC
T ss_pred ccHHhcCCCCEEECCCCCC
Confidence 65 788999999987753
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.95 E-value=1.8e-09 Score=120.43 Aligned_cols=117 Identities=18% Similarity=0.090 Sum_probs=87.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc-cccccCCceeEEEEEEEEEeCCeEEEEEeCCCh-------hhHHHHHHh--h
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN-VVFSEAGGITQHIGAYNVVTNHGSITFLDTPGH-------EAFTAMRAR--G 136 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~-~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG~-------e~f~~~~~~--~ 136 (1527)
..+.+|+++|.+|+|||||+|+|.+.. +..+..+++|.+........++..+.||||||- +........ .
T Consensus 30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~ 109 (257)
T d1h65a_ 30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 109 (257)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHh
Confidence 345789999999999999999999876 466667788888888888899999999999992 222222222 2
Q ss_pred ccccCEEEEEEeCCCC-CcHHHHHHHHHHHH-----cCCCEEEEEEcccCCcc
Q psy1758 137 AKVTDIVVLVVAADDG-VMPQTREAIAHAKI-----SGVPLIVAINKIDKLDI 183 (1527)
Q Consensus 137 ~~~aD~~IlVvda~~g-~~~qt~e~i~~~~~-----~~vpiIvviNKiDl~~~ 183 (1527)
....|++++|++++.. ........+..+.. ...++|+|.||+|....
T Consensus 110 ~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~ 162 (257)
T d1h65a_ 110 DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 162 (257)
T ss_dssp TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCc
Confidence 3567899999998874 55555555554432 22479999999998753
|
| >d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2 {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.94 E-value=1.2e-09 Score=102.10 Aligned_cols=86 Identities=26% Similarity=0.468 Sum_probs=75.3
Q ss_pred CCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ec
Q psy1758 1119 NNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TG 1196 (1527)
Q Consensus 1119 ~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~g 1196 (1527)
++||+|+|.+++..++.|+++.|+|.+|++++||++.++++ + ...+|.+|..+. .++++|.|||.+++ .|
T Consensus 3 d~Plr~pI~~vf~~~g~G~vv~G~v~~G~i~~gd~v~i~P~--~--~~~~VksI~~~~----~~~~~a~aG~~v~l~l~~ 74 (95)
T d1jnya1 3 DKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPA--G--KVGEVRSIETHH----TKMDKAEPGDNIGFNVRG 74 (95)
T ss_dssp GSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETT--T--EEEEEEEEEETT----EEESEECTTCEEEEEEES
T ss_pred CcCEEEEEEEEEEcCCceeEEEEEEeeccccCCCEEEEEeC--C--ceEEEEEEEecC----CccCEEeCCCcEEEEEEc
Confidence 68999999999999999999999999999999999999987 3 567899888764 57999999999965 56
Q ss_pred ce--ecccCCeeeCCCCC
Q psy1758 1197 IE--EICIGSTICDPSKP 1212 (1527)
Q Consensus 1197 l~--~~~iGdTi~~~~~~ 1212 (1527)
++ ++..||.||+++++
T Consensus 75 i~~~~i~rG~vl~~~~~~ 92 (95)
T d1jnya1 75 VEKKDIKRGDVVGHPNNP 92 (95)
T ss_dssp SCGGGCCTTCEEECTTSC
T ss_pred CcHHhcCCCCEEECCCcc
Confidence 54 68889999998875
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.90 E-value=1.1e-09 Score=116.42 Aligned_cols=158 Identities=15% Similarity=0.170 Sum_probs=110.2
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHHH
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV 1002 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ev 1002 (1527)
.+|+++|..++|||||+.++..... .. . .|+......+.++...+.+|||+|+..|...+
T Consensus 3 ~Kiv~lG~~~vGKTsll~r~~~~~~--~~--------------~----pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~ 62 (200)
T d2bcjq2 3 LKLLLLGTGESGKSTFIKQMRIIHG--SG--------------V----PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKW 62 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTS--SC--------------C----CCCSCEEEEEECSSCEEEEEECCCSTTGGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC--CC--------------C----ceeeEEEEEEeccceeeeeccccccccccccc
Confidence 5899999999999999999965421 10 1 23333445677788999999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCCCC-----------hhHHHHHHHHHH----cCCccEEEEeccCCCCC---------------
Q psy1758 1003 ERILSMVDNVLLLIDAVEGPM-----------PQTRFVTRKALK----LGFKPIVVVNKIDRSNA--------------- 1052 (1527)
Q Consensus 1003 ~~~l~~aD~ailVVDa~~G~~-----------~qt~~~~~~~~~----~glp~IvviNKiD~~~a--------------- 1052 (1527)
...++.++++++++|+++... ......|..... .+.|.+++.||.|+...
T Consensus 63 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~ 142 (200)
T d2bcjq2 63 IHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYD 142 (200)
T ss_dssp GGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCC
T ss_pred cccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhccccc
Confidence 999999999999999976321 123455555443 36889999999996311
Q ss_pred ----ChhhhHHHHHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1053 ----RPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1053 ----~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
+.....+.+...|.+.... ....+.++++||++|. |++.+|+.+.+.+
T Consensus 143 ~~~~~~~~~~~~i~~~f~~~~~~-~~~~~~~~~tSAk~~~----------ni~~vF~~i~~~I 194 (200)
T d2bcjq2 143 GPQRDAQAAREFILKMFVDLNPD-SDKIIYSHFTCATDTE----------NIRFVFAAVKDTI 194 (200)
T ss_dssp SCSSCHHHHHHHHHHHHHTTCSC-TTSCEEEEECCTTCHH----------HHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccc-CCCceEEEEeEEEcCH----------hHHHHHHHHHHHH
Confidence 1222223333334333221 2234567889999998 9999998887654
|
| >d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Thermus thermophilus [TaxId: 274]
Probab=98.89 E-value=1.8e-09 Score=101.80 Aligned_cols=94 Identities=20% Similarity=0.360 Sum_probs=77.7
Q ss_pred CCCCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEE
Q psy1758 1114 HKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVL 1193 (1527)
Q Consensus 1114 p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIva 1193 (1527)
|..+.++||+|+|.+++..+..|.++.|+|.+|++++||.+.+++. .......+|.+|+.+ ..++++|.|||.|+
T Consensus 1 P~R~~~~p~r~~Id~vf~~~g~Gtvv~G~v~~G~i~~gd~v~i~~~-~p~~~~~~V~sI~~~----~~~~~~a~aG~~v~ 75 (100)
T d2c78a1 1 PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGL-APETRKTVVTGVEMH----RKTLQEGIAGDNVG 75 (100)
T ss_dssp CCCCCSSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESS-SSSCEEEEEEEEEET----TEEESEEETTCEEE
T ss_pred CcCCCCCCEEEEEEEEEEcCCcEEEEEEEEeccEEECCCEeEEEee-cCCCcEEEEEEEEEC----CccccEEeCCCeEE
Confidence 4567789999999999999999999999999999999999999855 122345678888765 36899999999997
Q ss_pred E--ecce--ecccCCeeeCCCCC
Q psy1758 1194 I--TGIE--EICIGSTICDPSKP 1212 (1527)
Q Consensus 1194 i--~gl~--~~~iGdTi~~~~~~ 1212 (1527)
+ .|++ ++..|+.||+++..
T Consensus 76 l~l~gi~~~~i~rG~vl~~p~~l 98 (100)
T d2c78a1 76 VLLRGVSREEVERGQVLAKPGSI 98 (100)
T ss_dssp EEESSCCTTTCCTTCEEESTTSS
T ss_pred EEEcCCCHHHccCcCEEECCCCC
Confidence 6 5554 67789999987653
|
| >d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=1.9e-09 Score=99.82 Aligned_cols=86 Identities=29% Similarity=0.427 Sum_probs=73.1
Q ss_pred CCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--ec
Q psy1758 1119 NNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI--TG 1196 (1527)
Q Consensus 1119 ~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai--~g 1196 (1527)
++||+++|.+++..++.|+++.|+|.+|++++||+|.+++. +...+.+|.+|..+ +.+++.|.|||.+++ .|
T Consensus 3 d~P~rlpId~vf~i~G~GtVvtG~v~~G~i~~Gd~v~i~p~--~~~~~~~vksi~~~----~~~~~~a~aG~~v~l~L~g 76 (92)
T d1efca1 3 DKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGI--KETQKSTCTGVEMF----RKLLDEGRAGENVGVLLRG 76 (92)
T ss_dssp GSCCEEECCEEEECTTSCEEEEEECCBSEEETTCEEEEESS--SSCEEEEEEEEEET----TEEESEEETTCEEEEEETT
T ss_pred CCCEEEEEEEEEEcCCeEEEEEEEeccCeEcCCCEEEEEcC--CCCcEEEEEEEEEC----CcCccccCCCCEEEEEEcC
Confidence 68999999999999999999999999999999999999876 33345678888766 378999999999976 45
Q ss_pred ce--ecccCCeeeCCC
Q psy1758 1197 IE--EICIGSTICDPS 1210 (1527)
Q Consensus 1197 l~--~~~iGdTi~~~~ 1210 (1527)
++ +++.||.||++.
T Consensus 77 i~~~~i~rG~vl~~pG 92 (92)
T d1efca1 77 IKREEIERGQVLAKPG 92 (92)
T ss_dssp CCGGGCCTTCEEECTT
T ss_pred CCHHHcCCccEEeCCC
Confidence 54 688899999863
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.82 E-value=4.7e-09 Score=116.95 Aligned_cols=116 Identities=18% Similarity=0.196 Sum_probs=79.8
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCc---
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADF--- 998 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df--- 998 (1527)
..+|+++|.+|+|||||+|+|+++.-. ......+.|.........+++..+++|||||..+-
T Consensus 32 ~l~I~LvG~tg~GKSSliN~ilg~~~~---------------~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~ 96 (257)
T d1h65a_ 32 SLTILVMGKGGVGKSSTVNSIIGERVV---------------SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYI 96 (257)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCS---------------CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEE
T ss_pred CcEEEEECCCCCcHHHHHHHHhCCCce---------------eecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcch
Confidence 468999999999999999999976211 11122466666677778889999999999997542
Q ss_pred hH----HHHHHH--HhcCEEEEEEeCCCC-CChhHHHHHHHHHH-cC----CccEEEEeccCCCCC
Q psy1758 999 GG----EVERIL--SMVDNVLLLIDAVEG-PMPQTRFVTRKALK-LG----FKPIVVVNKIDRSNA 1052 (1527)
Q Consensus 999 ~~----ev~~~l--~~aD~ailVVDa~~G-~~~qt~~~~~~~~~-~g----lp~IvviNKiD~~~a 1052 (1527)
.. .+...+ ...|++++|+++... ...+....+..+.. +| .++|+|+||+|....
T Consensus 97 ~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~ 162 (257)
T d1h65a_ 97 NDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 162 (257)
T ss_dssp CHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCc
Confidence 12 222222 345789999998765 44555555554443 22 467899999998643
|
| >d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release factor ERF2, post-G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Eukaryotic peptide chain release factor ERF2, post-G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.81 E-value=3.3e-09 Score=99.06 Aligned_cols=86 Identities=24% Similarity=0.341 Sum_probs=70.9
Q ss_pred CCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe--
Q psy1758 1118 SNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT-- 1195 (1527)
Q Consensus 1118 ~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~-- 1195 (1527)
.++||+|+|.+++. ..|.+++|||.+|++++||+|.++|+ + ...+|..|+... ..++++|.|||.|+++
T Consensus 6 ~~~PlR~pV~d~~k--g~G~vv~G~v~sG~i~~gd~v~i~P~--~--~~~~Vk~I~~~~---~~~v~~a~aGd~V~l~l~ 76 (95)
T d1r5ba1 6 VNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPI--N--QTLEVTAIYDEA---DEEISSSICGDQVRLRVR 76 (95)
T ss_dssp HTSCCEEECCEEEE--SSSEEEEEECCBSEEETTEEEEEETT--T--EEEEEEEEECTT---CCEESEEETTCEEEEEEE
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEeeCeEeCCCEEEEecC--C--CEEEEEEEEEEc---cccccCcCCCCEEEEEEc
Confidence 46899999999984 67999999999999999999999987 2 456788876432 3569999999999875
Q ss_pred cc-eecccCCeeeCCCCC
Q psy1758 1196 GI-EEICIGSTICDPSKP 1212 (1527)
Q Consensus 1196 gl-~~~~iGdTi~~~~~~ 1212 (1527)
|. .++..||+||++++|
T Consensus 77 ~~~~di~rG~vl~~~~~P 94 (95)
T d1r5ba1 77 GDDSDVQTGYVLTSTKNP 94 (95)
T ss_dssp SCCTTCCTTCEEECSSSC
T ss_pred CcccccCCCCEEEcCCCC
Confidence 42 368889999998865
|
| >d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=98.81 E-value=5.6e-09 Score=97.91 Aligned_cols=91 Identities=18% Similarity=0.284 Sum_probs=75.0
Q ss_pred CCCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE-
Q psy1758 1116 DNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI- 1194 (1527)
Q Consensus 1116 ~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai- 1194 (1527)
.+.++||+|+|.+++..++.|.++.|+|.+|+|++||.+.+++. +.....+|..|..+ ..++++|.|||.|++
T Consensus 2 R~~d~Pfr~pId~vf~i~G~GtVvtG~v~~G~i~~gd~v~~~~~--~~~~~~~V~si~~~----~~~~~~a~aG~~v~l~ 75 (98)
T d1d2ea1 2 RDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGH--SKNIRTVVTGIEMF----HKSLDRAEAGDNLGAL 75 (98)
T ss_dssp CCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEET--TEEEEEEEEEEEET----TEEESEEETTCEEEEE
T ss_pred CCCCCCEEEEEEEEEEeCCcEEEEecceeeeeEeCCCEEEEccC--CCCeeEEEEEEEEe----ccEeccCCCCCEEEEE
Confidence 35689999999999999999999999999999999999987765 22234567777665 368999999999976
Q ss_pred -ecce--ecccCCeeeCCCCC
Q psy1758 1195 -TGIE--EICIGSTICDPSKP 1212 (1527)
Q Consensus 1195 -~gl~--~~~iGdTi~~~~~~ 1212 (1527)
.|++ ++..|+.||+++..
T Consensus 76 l~gi~~~~i~rG~vl~~p~~~ 96 (98)
T d1d2ea1 76 VRGLKREDLRRGLVMAKPGSI 96 (98)
T ss_dssp ESSCCGGGCCTTCEEESTTSC
T ss_pred EcCCCHHHccCccEEeCCCCC
Confidence 4654 68889999998654
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=4.6e-09 Score=120.44 Aligned_cols=109 Identities=21% Similarity=0.191 Sum_probs=70.2
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHH--HHHHHHHHcCCccEEEEeccCCCCCCh-hhhHHH
Q psy1758 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTR--FVTRKALKLGFKPIVVVNKIDRSNARP-EWVVDA 1060 (1527)
Q Consensus 984 ~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~--~~~~~~~~~glp~IvviNKiD~~~a~~-~~v~~~ 1060 (1527)
|+.+.||.|.|.-.-. ......+|.+++|++...|-.-|.. -+++ ++-++||||+|+++++. .....+
T Consensus 146 g~d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e------~aDi~VvNKaD~~~~~~~~~~~~~ 216 (327)
T d2p67a1 146 GYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLME------VADLIVINKDDGDNHTNVAIARHM 216 (327)
T ss_dssp TCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHH------HCSEEEECCCCTTCHHHHHHHHHH
T ss_pred CCCeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhhc------cccEEEEEeecccchHHHHHHHHH
Confidence 5678889998864422 2356789999999998877555532 2222 35599999999987542 233344
Q ss_pred HHHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhc
Q psy1758 1061 TFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYV 1111 (1527)
Q Consensus 1061 ~~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~l 1111 (1527)
....+..+.........||+.+||++|. |+++|++.|.++.
T Consensus 217 ~~~al~~~~~~~~~w~p~V~~~SA~~g~----------Gi~eL~~~I~~~~ 257 (327)
T d2p67a1 217 YESALHILRRKYDEWQPRVLTCSALEKR----------GIDEIWHAIIDFK 257 (327)
T ss_dssp HHHHHHHSCCSBTTBCCEEEECBGGGTB----------SHHHHHHHHHHHH
T ss_pred HHHHhhhcccCCCCCcceeEEEEeeCCC----------CHHHHHHHHHHHH
Confidence 4444333333333445689999999998 9999999987765
|
| >d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=98.71 E-value=1.5e-08 Score=93.67 Aligned_cols=86 Identities=15% Similarity=0.214 Sum_probs=72.4
Q ss_pred CCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEecc-
Q psy1758 1119 NNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGI- 1197 (1527)
Q Consensus 1119 ~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~gl- 1197 (1527)
+.+|+|+|..++..+.-+|...|+|.+|++++||+|.++|+ | ...+|.+|+.+. .++++|.|||.|++..-
T Consensus 4 ~~~fr~pVQ~V~r~~~~~r~~~G~v~sG~v~~Gd~v~i~Ps--g--~~~~Vk~I~~~~----~~~~~a~~G~~v~l~L~~ 75 (92)
T d1zunb1 4 YTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPS--G--KSSRVKSIVTFE----GELEQAGPGQAVTLTMED 75 (92)
T ss_dssp SSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTT--C--CEEEEEEEEETT----EEESEECTTCEEEEEESS
T ss_pred CCCeEEeEEEEEccCCCccEEEEEEcccEEecCCEEEECCC--C--ceEEEeEEEEcC----cccCEEcCCCEEEEEEcC
Confidence 45899999999877767788999999999999999999987 3 468999998765 58999999999987643
Q ss_pred -eecccCCeeeCCCCC
Q psy1758 1198 -EEICIGSTICDPSKP 1212 (1527)
Q Consensus 1198 -~~~~iGdTi~~~~~~ 1212 (1527)
.++..||+||+++++
T Consensus 76 ~~di~RGdvl~~~~~~ 91 (92)
T d1zunb1 76 EIDISRGDLLVHADNV 91 (92)
T ss_dssp CCCCCTTCEEEETTSC
T ss_pred ccccCCCCEEecCCCC
Confidence 356679999998764
|
| >d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor SelB, domains 2 and 4 species: Methanococcus maripaludis [TaxId: 39152]
Probab=98.66 E-value=1.5e-09 Score=100.59 Aligned_cols=86 Identities=21% Similarity=0.285 Sum_probs=73.9
Q ss_pred CCCCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEE--
Q psy1758 1117 NSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLI-- 1194 (1527)
Q Consensus 1117 ~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai-- 1194 (1527)
+.++||+|+|.+++..++.|.++.|+|.+|++++||+|.++|. + ...+|.+|+.+ ..++++|.|||.|++
T Consensus 2 ~~~~~fr~~I~~vf~i~g~G~VvtG~v~sG~i~~gd~v~i~P~--~--~~~~VksI~~~----~~~~~~a~aGd~v~l~L 73 (92)
T d1wb1a1 2 NTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPI--N--MSTKVRSIQYF----KESVMEAKAGDRVGMAI 73 (92)
T ss_dssp CSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTT--C--CCEEECCBCGG----GSCBCCCCSSCCCCEEC
T ss_pred CCCCCEEEEEEEEEEeCCcEEEEEeEEeeceEecCCeEEEecc--C--CceEEEeeeEc----CceeeEeCCCCEEEEEE
Confidence 4689999999999999999999999999999999999999987 2 45788888654 368999999999976
Q ss_pred ecc--eecccCCeeeCCC
Q psy1758 1195 TGI--EEICIGSTICDPS 1210 (1527)
Q Consensus 1195 ~gl--~~~~iGdTi~~~~ 1210 (1527)
.|+ +++..||.||+++
T Consensus 74 ~gi~~~~i~rG~vl~~~~ 91 (92)
T d1wb1a1 74 QGVDAKQIYRGCILTSKD 91 (92)
T ss_dssp SSCCSSCCCSSCBCCCTT
T ss_pred cCCCHHHcCCcCEEeCCC
Confidence 455 4688899999875
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.65 E-value=6.3e-09 Score=113.23 Aligned_cols=108 Identities=12% Similarity=0.135 Sum_probs=80.5
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchH
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGG 1000 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~ 1000 (1527)
...+|.++|..|+|||||+.+|..... - .|+......+.+++..+.++|++|+..+..
T Consensus 5 ~~~KilllG~~~vGKTsll~~~~~~~~------------------~----pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~ 62 (221)
T d1azta2 5 ATHRLLLLGAGESGKSTIVKQMRILHV------------------V----LTSGIFETKFQVDKVNFHMFDVGGQRDERR 62 (221)
T ss_dssp HSEEEEEECSTTSSHHHHHHHHHHHHC------------------C----CCCSCEEEEEEETTEEEEEEECCCSTTTTT
T ss_pred hcCEEEEECCCCCCHHHHHHHHhcCCc------------------C----CCCCeEEEEEEECcEEEEEEecCccceecc
Confidence 346899999999999999999953210 0 123333456788999999999999999999
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCC-----------hhHHHHHHHHHH----cCCccEEEEeccCCC
Q psy1758 1001 EVERILSMVDNVLLLIDAVEGPM-----------PQTRFVTRKALK----LGFKPIVVVNKIDRS 1050 (1527)
Q Consensus 1001 ev~~~l~~aD~ailVVDa~~G~~-----------~qt~~~~~~~~~----~glp~IvviNKiD~~ 1050 (1527)
.+......++++++++|.++-.. ......|..+.. .++|+++++||+|+.
T Consensus 63 ~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~ 127 (221)
T d1azta2 63 KWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 127 (221)
T ss_dssp GGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHH
T ss_pred chhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhh
Confidence 99999999999999999875211 122233333332 368999999999974
|
| >d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit, domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=98.56 E-value=7e-08 Score=93.57 Aligned_cols=94 Identities=21% Similarity=0.345 Sum_probs=73.1
Q ss_pred CCCCCCCCceeEEEeeecc--------ccCceEEEEEeecCccccCCEEEEecCCC--------CCcCcceeeeEEEeec
Q psy1758 1114 HKDNSNNPLQLQIISLEYS--------SYLGKIGIGRILSGRIKSLQDVVIMNGPD--------DKPNKAKINQIRVFKG 1177 (1527)
Q Consensus 1114 p~~~~~~p~~~~V~~~~~d--------~~~G~v~~grV~sG~lk~Gd~v~~~~~~~--------g~~~~~kV~~i~~~~g 1177 (1527)
|..+.+.||+|+|..++.- ++.|.++.|+|.+|+|++||+|.++|.+. ++..+.+|.+|+.+.
T Consensus 1 P~R~~~~p~r~~Idr~F~v~g~Gt~~~~~~G~VvtGtv~sG~ik~GD~v~i~P~~~~~~~~~~~~~~~~~~V~sI~~~~- 79 (121)
T d1kk1a1 1 PKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGG- 79 (121)
T ss_dssp CCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETT-
T ss_pred CCCCCCCCcEEEEEEEEEecCCCCccccCcceEEEeeecCCEEecCCEEEECCCCccccccceeceeeeeEEEEEEECC-
Confidence 4567789999999998865 45566999999999999999999998610 001235788888764
Q ss_pred CceeEeeeeecCCEEEEe-----cc--eecccCCeeeCCCC
Q psy1758 1178 LDRVLVNEALSGDIVLIT-----GI--EEICIGSTICDPSK 1211 (1527)
Q Consensus 1178 ~~~~~v~~a~AGdIvai~-----gl--~~~~iGdTi~~~~~ 1211 (1527)
.++++|.|||.|++. ++ +|+..|++|+.++.
T Consensus 80 ---~~v~~A~~G~~Vgv~l~~d~~i~r~Dv~rG~Vl~~pg~ 117 (121)
T d1kk1a1 80 ---QFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGK 117 (121)
T ss_dssp ---EEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTC
T ss_pred ---CCcCEEeCCCeEEEEecccCCcchhHhcceeEEECCCC
Confidence 689999999999875 22 26778999998765
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=98.52 E-value=1.2e-07 Score=108.38 Aligned_cols=156 Identities=17% Similarity=0.115 Sum_probs=84.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcc------cc-ccccCCceeEE-----------------EEEEEEEe---------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKT------NV-VFSEAGGITQH-----------------IGAYNVVT--------- 113 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~------~~-~~~~~~giT~~-----------------~~~~~~~~--------- 113 (1527)
.+.++|+|.|+||+|||||+++|... .+ .....|..+.+ ...+.-..
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~ 131 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 131 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccc
Confidence 46789999999999999999998532 21 11111111110 00010000
Q ss_pred -------------CCeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccC
Q psy1758 114 -------------NHGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK 180 (1527)
Q Consensus 114 -------------~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl 180 (1527)
.+..+.|+.|.|.-.-. ......+|.+++|++...|-..|....- . ..++=++|+||+|+
T Consensus 132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~g-i---~e~aDi~VvNKaD~ 204 (327)
T d2p67a1 132 SQRARELMLLCEAAGYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKG-L---MEVADLIVINKDDG 204 (327)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHH-H---HHHCSEEEECCCCT
T ss_pred hhhhhHHHHHHHhcCCCeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchh-h---hccccEEEEEeecc
Confidence 12346677776632111 1234678999999988776544432111 0 11244889999999
Q ss_pred CcchhHHH-HHHHhhh----cccccccCCCCcEEEeeccCCCChhHHHHHHHHHHH
Q psy1758 181 LDINLDRI-KQDLISE----QVIPEEYGGASPFISISAKTGVGINKLLENISLQAE 231 (1527)
Q Consensus 181 ~~~~~~~~-~~~l~~~----~~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~ 231 (1527)
...+.... ...+... ......| ..|++.+||++|.||++|.+.|.....
T Consensus 205 ~~~~~~~~~~~~~~~al~~~~~~~~~w--~p~V~~~SA~~g~Gi~eL~~~I~~~~~ 258 (327)
T d2p67a1 205 DNHTNVAIARHMYESALHILRRKYDEW--QPRVLTCSALEKRGIDEIWHAIIDFKT 258 (327)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCSBTTB--CCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhhcccCCCCC--cceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence 87543221 1111111 1112233 358999999999999999999975443
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.50 E-value=1e-07 Score=109.00 Aligned_cols=111 Identities=20% Similarity=0.217 Sum_probs=69.6
Q ss_pred cCeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHH-
Q psy1758 983 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDAT- 1061 (1527)
Q Consensus 983 ~~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~- 1061 (1527)
.|+.+.||-|.|--.-..+ ....+|..++|+....|-.-|... +--+.++-++|+||+|+.++. .....+
T Consensus 142 ~g~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k----~gilE~aDi~vvNKaD~~~~~--~~~~~~~ 212 (323)
T d2qm8a1 142 AGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIK----KGIFELADMIAVNKADDGDGE--RRASAAA 212 (323)
T ss_dssp TTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CC----TTHHHHCSEEEEECCSTTCCH--HHHHHHH
T ss_pred CCCCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhh----hhHhhhhheeeEeccccccch--HHHHHHH
Confidence 3678999999996553332 456799999999999876555321 111123459999999987653 222222
Q ss_pred ---HHHHhhhcccccccCCcEEEeccccCCcCCCcccccCCChhHHHHHHhhcC
Q psy1758 1062 ---FDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVP 1112 (1527)
Q Consensus 1062 ---~~~~~~l~~~~~~~~~pvi~~SA~~g~~~~~~~~~~~gi~~Ll~~i~~~lp 1112 (1527)
...+..+.........|++.+||++|. |+++|+++|.++..
T Consensus 213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~----------Gi~el~~~I~~~~~ 256 (323)
T d2qm8a1 213 SEYRAALHILTPPSATWTPPVVTISGLHGK----------GLDSLWSRIEDHRS 256 (323)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTB----------SHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccccccCCCCceEEEEecCCC----------CHHHHHHHHHHHHH
Confidence 222222222223345689999999998 99999999977653
|
| >d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Hypothetical protein PF0907 species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.45 E-value=1.8e-07 Score=86.14 Aligned_cols=81 Identities=22% Similarity=0.162 Sum_probs=67.4
Q ss_pred CCCCc-eeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe-
Q psy1758 1118 SNNPL-QLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT- 1195 (1527)
Q Consensus 1118 ~~~p~-~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~- 1195 (1527)
...|+ +++|.+++...+ |++..|+|.+|++++||.|.+.|. ..+|.+|+.+. .++++|.|||.|++.
T Consensus 5 ~~kp~~R~~Id~vf~i~G-gtVvtGtV~sG~i~~Gd~v~~~p~------~~~VksIq~~~----~~v~~a~~G~~v~l~L 73 (91)
T d1xe1a_ 5 SKKPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKVKGPSG------IGGIVRIERNR----EKVEFAIAGDRIGISI 73 (91)
T ss_dssp CSSCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEEECSSC------EEEEEEEEETT----EEESEEETTCEEEEEE
T ss_pred cCCCccEeeEEEEEEECC-cEEEEEEEeeCCcCCCCEEEECCc------cEEEEEEEEcc----eEhhhhhhcceeEEEE
Confidence 35677 999999999999 999999999999999999987643 36799888764 579999999999874
Q ss_pred -cc-eecccCCeeeCC
Q psy1758 1196 -GI-EEICIGSTICDP 1209 (1527)
Q Consensus 1196 -gl-~~~~iGdTi~~~ 1209 (1527)
|- +++..||.|+..
T Consensus 74 ~~~~~di~rGdvL~~~ 89 (91)
T d1xe1a_ 74 EGKIGKVKKGDVLEIY 89 (91)
T ss_dssp ESCCCCCCTTCEEEEE
T ss_pred cCCcCCcCCCCEEEec
Confidence 42 268889999754
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.40 E-value=4.9e-07 Score=102.44 Aligned_cols=115 Identities=18% Similarity=0.220 Sum_probs=74.2
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEE------------------------------------
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYN------------------------------------ 110 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~------------------------------------ 110 (1527)
..|.|+|+|+.++|||||+|+|.+..+ ..+..+ +|..+....
T Consensus 25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~-~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (299)
T d2akab1 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSC-SCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCc-cccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHh
Confidence 467899999999999999999999886 333322 221111111
Q ss_pred ---------------EEeC-CeEEEEEeCCCh-------------hhHHHHHHhhccccCE-EEEEEeCCCCCcHHH-HH
Q psy1758 111 ---------------VVTN-HGSITFLDTPGH-------------EAFTAMRARGAKVTDI-VVLVVAADDGVMPQT-RE 159 (1527)
Q Consensus 111 ---------------~~~~-~~~i~~iDTPG~-------------e~f~~~~~~~~~~aD~-~IlVvda~~g~~~qt-~e 159 (1527)
+... -..++|+||||. .....+...++..++. +++|.++......+. ..
T Consensus 104 ~~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~ 183 (299)
T d2akab1 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred hCCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHH
Confidence 1111 124889999992 2234556667767764 556666766554433 44
Q ss_pred HHHHHHHcCCCEEEEEEcccCCcc
Q psy1758 160 AIAHAKISGVPLIVAINKIDKLDI 183 (1527)
Q Consensus 160 ~i~~~~~~~vpiIvviNKiDl~~~ 183 (1527)
..+.+.....++++|+||+|+.+.
T Consensus 184 ~~~~~~~~~~r~i~Vltk~D~~~~ 207 (299)
T d2akab1 184 IAKEVDPQGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHHCTTCSSEEEEEECGGGSCT
T ss_pred HHHHhCcCCCceeeEEeccccccc
Confidence 555555566789999999998763
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.36 E-value=1.5e-07 Score=108.01 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=46.2
Q ss_pred EEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEE------------------------eCCeEEEEEeCCCh
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVV------------------------TNHGSITFLDTPGH 126 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~------------------------~~~~~i~~iDTPG~ 126 (1527)
+|+++|.||||||||+|+|++.+..++.+|++|.+....... +...++.|+|+||-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pGl 81 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred cEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCCc
Confidence 599999999999999999999999889999999876544321 11236999999993
Q ss_pred hh-------HHHHHHhhccccCEEEEEEeCCC
Q psy1758 127 EA-------FTAMRARGAKVTDIVVLVVAADD 151 (1527)
Q Consensus 127 e~-------f~~~~~~~~~~aD~~IlVvda~~ 151 (1527)
-. ........++.+|+++.|+|+.+
T Consensus 82 i~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 82 VPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp -------------CCCSSTTCSEEEEEEETTC
T ss_pred ccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 21 12222244578999999999874
|
| >d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit, domain II {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.35 E-value=5.2e-07 Score=86.88 Aligned_cols=91 Identities=18% Similarity=0.240 Sum_probs=70.9
Q ss_pred CCCCCceeEEEeeec--------cccCceEEEEEeecCccccCCEEEEecCCCC--------CcCcceeeeEEEeecCce
Q psy1758 1117 NSNNPLQLQIISLEY--------SSYLGKIGIGRILSGRIKSLQDVVIMNGPDD--------KPNKAKINQIRVFKGLDR 1180 (1527)
Q Consensus 1117 ~~~~p~~~~V~~~~~--------d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g--------~~~~~kV~~i~~~~g~~~ 1180 (1527)
+.+.||+|+|..++. ..+.|.++.|+|.+|+|++||+|.++|.+.. +....+|.+|+.+.
T Consensus 2 ~~~~p~~~~I~r~F~i~~~gt~~~~~~G~VvtGtv~sG~i~~GD~v~i~P~~~~~~~~~~~~~~~~t~V~sI~~~~---- 77 (118)
T d1s0ua1 2 DPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGN---- 77 (118)
T ss_dssp CTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETT----
T ss_pred CCCCCcEEEEEeEEcccCCCCccccccccEEEeeecccEEeeCCEEEECCCCcccccceeeeeeeeEEEEEEEECC----
Confidence 568999999998764 3556779999999999999999999986200 01236799888764
Q ss_pred eEeeeeecCCEEEEec-----c--eecccCCeeeCCCC
Q psy1758 1181 VLVNEALSGDIVLITG-----I--EEICIGSTICDPSK 1211 (1527)
Q Consensus 1181 ~~v~~a~AGdIvai~g-----l--~~~~iGdTi~~~~~ 1211 (1527)
.++++|.|||.|+|.- + .|+..|++|+.++.
T Consensus 78 ~~v~~A~aG~~V~i~l~~d~~i~r~Di~~G~Vl~~pg~ 115 (118)
T d1s0ua1 78 TILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGT 115 (118)
T ss_dssp EEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTC
T ss_pred cccCEEeCCCEEEEEeccCCCccHHHheeeeEEeCCCC
Confidence 6899999999999852 2 25677999998764
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.34 E-value=8e-07 Score=101.06 Aligned_cols=116 Identities=20% Similarity=0.307 Sum_probs=72.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEE------------------------------------
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYN------------------------------------ 110 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~------------------------------------ 110 (1527)
...|.|+|+|+.++|||||+|+|.+..+.......+|..+....
T Consensus 22 ~~lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (306)
T d1jwyb_ 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (306)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHH
Confidence 34578999999999999999999988763222222222221111
Q ss_pred -----------------------EEeC-CeEEEEEeCCCh-------------hhHHHHHHhhccccCEEEEEE-eCCCC
Q psy1758 111 -----------------------VVTN-HGSITFLDTPGH-------------EAFTAMRARGAKVTDIVVLVV-AADDG 152 (1527)
Q Consensus 111 -----------------------~~~~-~~~i~~iDTPG~-------------e~f~~~~~~~~~~aD~~IlVv-da~~g 152 (1527)
+... -..++|+||||. +....+...+++.++.+++++ ++...
T Consensus 102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~ 181 (306)
T d1jwyb_ 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (306)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccc
Confidence 1111 124889999992 224466677888898766554 55544
Q ss_pred Cc-HHHHHHHHHHHHcCCCEEEEEEcccCCc
Q psy1758 153 VM-PQTREAIAHAKISGVPLIVAINKIDKLD 182 (1527)
Q Consensus 153 ~~-~qt~e~i~~~~~~~vpiIvviNKiDl~~ 182 (1527)
.. ......++.+...+.++++|+||+|...
T Consensus 182 ~~~~~~~~~~~~~~~~~~r~i~Vitk~D~~~ 212 (306)
T d1jwyb_ 182 LANSDALQLAKEVDPEGKRTIGVITKLDLMD 212 (306)
T ss_dssp STTCSHHHHHHHHCSSCSSEEEEEECTTSSC
T ss_pred ccccHHHHHHHHhCcCCCeEEEEEecccccc
Confidence 33 3344555555555568999999999875
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.27 E-value=1.5e-06 Score=99.15 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=61.9
Q ss_pred CeEEEEEeCCChhhHHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHH--HHHH
Q psy1758 115 HGSITFLDTPGHEAFTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRI--KQDL 192 (1527)
Q Consensus 115 ~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~--~~~l 192 (1527)
+..+.|+-|.|.-.-.. .....+|..++|+....|..-|.... .-..++=++|+||+|+.+...... ....
T Consensus 143 g~d~iiiETVG~gq~e~---~~~~~~D~~v~v~~p~~GD~iQ~~k~----gilE~aDi~vvNKaD~~~~~~~~~~~~~~~ 215 (323)
T d2qm8a1 143 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKK----GIFELADMIAVNKADDGDGERRASAAASEY 215 (323)
T ss_dssp TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCT----THHHHCSEEEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEeehhhhhhhh---hhhcccceEEEEeeccchhhhhhhhh----hHhhhhheeeEeccccccchHHHHHHHHHH
Confidence 34577888887321111 12345899999999988654432210 001234589999999876432211 1111
Q ss_pred hhh-c-ccccccCCCCcEEEeeccCCCChhHHHHHHHHHHH
Q psy1758 193 ISE-Q-VIPEEYGGASPFISISAKTGVGINKLLENISLQAE 231 (1527)
Q Consensus 193 ~~~-~-~~~~~~~~~~~v~~iSAktg~gI~eL~~~l~~~~~ 231 (1527)
... . ..........|++.+||++|.|+++|.++|....+
T Consensus 216 ~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~ 256 (323)
T d2qm8a1 216 RAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 256 (323)
T ss_dssp HHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 111 1 11111122468999999999999999999975543
|
| >d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus [TaxId: 274]
Probab=98.18 E-value=2.4e-06 Score=82.86 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=73.2
Q ss_pred cCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCC---ceeeecCCCcceEecCCC
Q psy1758 236 KAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENG---KNILEAGPSIPVEIQGLT 310 (1527)
Q Consensus 236 ~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g---~~v~~a~~~~~v~I~gl~ 310 (1527)
..+++.|+.++|+++.++++.|.+++++|++|+|+.||.|.+.. ...||..++...+ .++.++.+|+.+.|.|++
T Consensus 20 ~pd~~~p~~a~Vfk~~~d~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~~i~gl~ 99 (121)
T d2bv3a1 20 HPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLK 99 (121)
T ss_dssp CCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTTTEEEEECEEEEECSSCEEEESEEETTCEEEEESCS
T ss_pred eCCCCCCEEEEEEeeeecCCCCeEEeeeecccccCCCCEEEEccCCCEEEEeeeeeeecccccEeeEeccccceEEeccC
Confidence 34567899999999999999999999999999999999998753 3346666655444 578899999999999998
Q ss_pred CCCCCCCeEEEeCC
Q psy1758 311 KVPFSGEELFVILN 324 (1527)
Q Consensus 311 ~~~~~G~~~~~~~~ 324 (1527)
+. ..||.+....+
T Consensus 100 ~~-~~GDTl~~~~~ 112 (121)
T d2bv3a1 100 ET-ITGDTLVGEDA 112 (121)
T ss_dssp SC-CTTCEEEETTS
T ss_pred Cc-eeCCEEecCCC
Confidence 87 89999976544
|
| >d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor G (EF-G), domain II species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=98.14 E-value=1.1e-06 Score=82.90 Aligned_cols=84 Identities=18% Similarity=0.182 Sum_probs=70.5
Q ss_pred CCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceeeeEeEeeccCC---ceeeecCCCcceEecCCCCCCC
Q psy1758 238 PVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENG---KNILEAGPSIPVEIQGLTKVPF 314 (1527)
Q Consensus 238 ~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~kVr~i~~~~g---~~v~~a~~~~~v~I~gl~~~~~ 314 (1527)
+.+.|+.++|+++..+++.|++++++|++|+|+.||.|.+.....++..++...+ .++.++.+|+.+.|.|++++ .
T Consensus 5 ~~d~p~~a~Vfk~~~d~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~aGdI~~v~g~~~~-~ 83 (103)
T d2dy1a1 5 FGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGL-H 83 (103)
T ss_dssp HCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCTTSCEEESSEEEEETTEEEEESCEETTCEEEESSCTTC-C
T ss_pred CCCCCcEEEEEEEEecCCCCEEEEEEEeccccCCCCEEEEeecccccceeeeeecCcceecCEecCCCEEEEeCCCCC-c
Confidence 4568999999999999999999999999999999999987655556665554444 56788999999999999886 8
Q ss_pred CCCeEEEe
Q psy1758 315 SGEELFVI 322 (1527)
Q Consensus 315 ~G~~~~~~ 322 (1527)
.||++..-
T Consensus 84 iGDTl~~~ 91 (103)
T d2dy1a1 84 RGMVLWQG 91 (103)
T ss_dssp TTCEEESS
T ss_pred cCCEEcCC
Confidence 99988743
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.10 E-value=4.7e-07 Score=103.73 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=47.1
Q ss_pred EEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeee----------------EEEEecCeEE
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKN----------------CSIEYNGTRI 987 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~----------------~~~~~~~~~i 987 (1527)
.|||+|.||+|||||+|+|++..-.+..++++. +++..|++..... ....+.+..+
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT--------~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 73 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTT--------IEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPV 73 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC----------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEE
T ss_pred cEeEECCCCCCHHHHHHHHHCCCCchhcCCCCc--------ccCccceeeCCCCchhhhhhhccCccccccccccccccE
Confidence 599999999999999999987643333333211 1222233221000 1111234679
Q ss_pred EEEeCCCCCCc-------hHHHHHHHHhcCEEEEEEeCCC
Q psy1758 988 NIIDTPGHADF-------GGEVERILSMVDNVLLLIDAVE 1020 (1527)
Q Consensus 988 niiDTPGh~df-------~~ev~~~l~~aD~ailVVDa~~ 1020 (1527)
+++|+||...- +..+.+.++.+|+++.||||.+
T Consensus 74 ~~~D~pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 74 KMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp EEEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred EEEECCCcccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 99999996542 2223334688999999999974
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.10 E-value=1.3e-06 Score=98.80 Aligned_cols=84 Identities=19% Similarity=0.157 Sum_probs=66.0
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCC-----------------eEEEEEeCCC----
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNH-----------------GSITFLDTPG---- 125 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~-----------------~~i~~iDTPG---- 125 (1527)
...+|+|+|.||||||||++++++... ..+.+|++|++.....+...+ ..+.|+|.||
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g 88 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 88 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence 457899999999999999999998765 577889999987776666543 3689999998
Q ss_pred -hh--hHHHHHHhhccccCEEEEEEeCCC
Q psy1758 126 -HE--AFTAMRARGAKVTDIVVLVVAADD 151 (1527)
Q Consensus 126 -~e--~f~~~~~~~~~~aD~~IlVvda~~ 151 (1527)
|+ .........++.||+++.|+|+.+
T Consensus 89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccccccHHHHHHHhhccceeEEEEeccC
Confidence 22 122344456788999999999876
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.10 E-value=7.3e-07 Score=100.00 Aligned_cols=82 Identities=18% Similarity=0.161 Sum_probs=59.5
Q ss_pred CEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCe-----------------EEEEEeCCC-----hh
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHG-----------------SITFLDTPG-----HE 127 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~-----------------~i~~iDTPG-----~e 127 (1527)
.+|+|||-||||||||++++++.....+.+|++|.+.....+...+. .+.|+|.|| |+
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~~ 82 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCccc
Confidence 57999999999999999999999988888899998877776665432 588999999 21
Q ss_pred --hHHHHHHhhccccCEEEEEEeCCC
Q psy1758 128 --AFTAMRARGAKVTDIVVLVVAADD 151 (1527)
Q Consensus 128 --~f~~~~~~~~~~aD~~IlVvda~~ 151 (1527)
.....-.+.++.||+++.|+|+..
T Consensus 83 g~Glg~~FL~~ir~~d~LihVVr~f~ 108 (278)
T d1jala1 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (278)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred CCCccHHHHHHHHhccceEEEeeccC
Confidence 122223455688999999999854
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.05 E-value=2e-06 Score=97.29 Aligned_cols=82 Identities=16% Similarity=0.250 Sum_probs=62.6
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccC-cccccccccceecchhhhhcccceeEeeeeEEEEecC-----------------
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSG-TFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG----------------- 984 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g-~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~----------------- 984 (1527)
.+|+|||.||+|||||+++|+...- .+.. -+++|+++..+.+...+
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~~~~~an----------------ypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~ 74 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSVLGNPAN----------------YPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVP 74 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTC----------------CSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCCCCcCC----------------CCccCccCCeEEEeccccchhhhhhcccCCceec
Confidence 4799999999999999999986521 2222 24566666666665432
Q ss_pred eEEEEEeCCCCCC-------chHHHHHHHHhcCEEEEEEeCCC
Q psy1758 985 TRINIIDTPGHAD-------FGGEVERILSMVDNVLLLIDAVE 1020 (1527)
Q Consensus 985 ~~iniiDTPGh~d-------f~~ev~~~l~~aD~ailVVDa~~ 1020 (1527)
..+.++|.||... .+.....-++.||+.+.|||+.+
T Consensus 75 ~~i~~~DvaGLv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 75 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccceeeeccccccccccccccHHHHHHHhhccceeEEEEeccC
Confidence 4789999999543 56788889999999999999975
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.05 E-value=2.7e-06 Score=96.51 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=44.9
Q ss_pred eEEEEEeCCCCCCc-------------hHHHHHHHHhcCEEEEEE-eCCCCCChh-HHHHHHHHHHcCCccEEEEeccCC
Q psy1758 985 TRINIIDTPGHADF-------------GGEVERILSMVDNVLLLI-DAVEGPMPQ-TRFVTRKALKLGFKPIVVVNKIDR 1049 (1527)
Q Consensus 985 ~~iniiDTPGh~df-------------~~ev~~~l~~aD~ailVV-Da~~G~~~q-t~~~~~~~~~~glp~IvviNKiD~ 1049 (1527)
..++||||||.... ...+..++..++.++++| ++...+..+ +..+.+.+...+.+.++|+||+|.
T Consensus 131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~~~r~i~Vitk~D~ 210 (306)
T d1jwyb_ 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDL 210 (306)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTS
T ss_pred CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCcCCCeEEEEEecccc
Confidence 46899999996542 234556788899766554 665544433 344555555556788999999998
Q ss_pred CCC
Q psy1758 1050 SNA 1052 (1527)
Q Consensus 1050 ~~a 1052 (1527)
...
T Consensus 211 ~~~ 213 (306)
T d1jwyb_ 211 MDK 213 (306)
T ss_dssp SCS
T ss_pred ccc
Confidence 643
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.02 E-value=1.7e-06 Score=96.99 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=57.4
Q ss_pred eEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecC-----------------e
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNG-----------------T 985 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-----------------~ 985 (1527)
.+|+|||.||+|||||+++|+.....+..+++ +|+++..+.+...+ .
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf----------------~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a 66 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPF----------------CTIEPNTGVVPMPDPRLDALAEIVKPERILPT 66 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CC----------------CCCCCCSSEEECCCHHHHHHHHHHCCSEEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHCCCCccccCCC----------------CCCCCceEEEecccHhHHHHHHhcCCCceeee
Confidence 37999999999999999999976433333333 44444444444322 3
Q ss_pred EEEEEeCCCCCC-------chHHHHHHHHhcCEEEEEEeCCC
Q psy1758 986 RINIIDTPGHAD-------FGGEVERILSMVDNVLLLIDAVE 1020 (1527)
Q Consensus 986 ~iniiDTPGh~d-------f~~ev~~~l~~aD~ailVVDa~~ 1020 (1527)
.+.++|.||... .+....+-++.||+++.||||.+
T Consensus 67 ~i~~~Di~GLi~ga~~g~Glg~~FL~~ir~~d~LihVVr~f~ 108 (278)
T d1jala1 67 TMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (278)
T ss_dssp EEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eEEEEEccccCCCcccCCCccHHHHHHHHhccceEEEeeccC
Confidence 588999999654 34457788899999999999864
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.98 E-value=5.4e-06 Score=93.63 Aligned_cols=68 Identities=13% Similarity=0.199 Sum_probs=43.6
Q ss_pred eEEEEEeCCCCCC--------c-----hHHHHHHHHhcCEEE-EEEeCCCCCChhH-HHHHHHHHHcCCccEEEEeccCC
Q psy1758 985 TRINIIDTPGHAD--------F-----GGEVERILSMVDNVL-LLIDAVEGPMPQT-RFVTRKALKLGFKPIVVVNKIDR 1049 (1527)
Q Consensus 985 ~~iniiDTPGh~d--------f-----~~ev~~~l~~aD~ai-lVVDa~~G~~~qt-~~~~~~~~~~glp~IvviNKiD~ 1049 (1527)
..+.||||||... . ...+..++..++.++ +|.+|...+..+. ..+.+.+...+.+.++|+||+|.
T Consensus 125 ~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~~~r~i~Vltk~D~ 204 (299)
T d2akab1 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDL 204 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGG
T ss_pred CCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcCCCceeeEEecccc
Confidence 3589999999532 1 233455666777554 5566655444433 34445555566788999999998
Q ss_pred CCC
Q psy1758 1050 SNA 1052 (1527)
Q Consensus 1050 ~~a 1052 (1527)
...
T Consensus 205 ~~~ 207 (299)
T d2akab1 205 MDE 207 (299)
T ss_dssp SCT
T ss_pred ccc
Confidence 653
|
| >d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit, domain II {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Sulfolobus solfataricus [TaxId: 2287]
Probab=97.95 E-value=7.4e-06 Score=78.16 Aligned_cols=86 Identities=23% Similarity=0.252 Sum_probs=65.7
Q ss_pred CCCCCceeEEEeee--------ccccCceEEEEEeecCccccCCEEEEecCCCCCc----------CcceeeeEEEeecC
Q psy1758 1117 NSNNPLQLQIISLE--------YSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKP----------NKAKINQIRVFKGL 1178 (1527)
Q Consensus 1117 ~~~~p~~~~V~~~~--------~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~----------~~~kV~~i~~~~g~ 1178 (1527)
+.+.|++++|...+ +.++.|.++.|+|.+|+|++||+|.+.|. +.. ...+|.+|+.+.
T Consensus 2 d~~~~p~~~V~R~F~vn~pgt~~~~~~G~VvtGtv~~G~ikvGD~i~i~P~--~~~~~~~~~~~~~~~t~V~sI~~~~-- 77 (114)
T d2qn6a1 2 DLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPG--LRVEKQGKVSYEPIFTKISSIRFGD-- 77 (114)
T ss_dssp CTTSCCEEEEEEEECCCCTTCBGGGCCCCEEEEEEEESCEETTCEEEEEEE--EEEEETTEEEEEEEEEEEEEEEETT--
T ss_pred CCCCCceEEEeccccccCCCCCcccccceEEEEEEccccEEeCCEEEEcCC--CccccCceeeeeecceEEEEEEECC--
Confidence 45789999998764 44567889999999999999999999986 211 235788888764
Q ss_pred ceeEeeeeecCCEEEEecc-------eecccCCeeeC
Q psy1758 1179 DRVLVNEALSGDIVLITGI-------EEICIGSTICD 1208 (1527)
Q Consensus 1179 ~~~~v~~a~AGdIvai~gl-------~~~~iGdTi~~ 1208 (1527)
.++++|.|||.|+|.-- .|+..|+.++.
T Consensus 78 --~~v~~A~aG~~V~i~l~~d~~isr~D~l~G~Vl~~ 112 (114)
T d2qn6a1 78 --EEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITL 112 (114)
T ss_dssp --EEESEECSSSCEEEEESSCHHHHGGGTTTTCEEEE
T ss_pred --cccCEEeCCCEEEEEeccCCCcchhheeeeeEEec
Confidence 68999999999998522 14555666654
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=97.86 E-value=3.8e-06 Score=93.73 Aligned_cols=58 Identities=29% Similarity=0.383 Sum_probs=38.1
Q ss_pred cccCCCEEEEEecCCCChhHHHHHHHcccc-ccccCCceeEEEEEEEEEeCCeEEEEEeCCC
Q psy1758 65 SLVRAPIVTIMGHVDHGKTSLLDYIRKTNV-VFSEAGGITQHIGAYNVVTNHGSITFLDTPG 125 (1527)
Q Consensus 65 ~~~r~~~V~IvG~~~~GKTSLl~~L~~~~~-~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG 125 (1527)
...++.+|+|+|.||||||||+|+|.+... .++..||+|.+..... .+..+.++||||
T Consensus 108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~---~~~~~~l~DTPG 166 (273)
T d1puja_ 108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK---VGKELELLDTPG 166 (273)
T ss_dssp CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE---ETTTEEEEECCC
T ss_pred CCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEE---CCCCeEEecCCC
Confidence 345678899999999999999999998774 8889999999876543 345699999999
|
| >d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Hypothetical protein PF0907 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.70 E-value=0.0001 Score=67.32 Aligned_cols=83 Identities=20% Similarity=0.115 Sum_probs=67.8
Q ss_pred CCCCC-ceEEEEEeecCCCceEEEEEeeccEEEeccEEEecceeeeEeEeeccCCceeeecCCCcceEec--CCCCCCCC
Q psy1758 239 VTTPA-KGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGASYGRIRSMLNENGKNILEAGPSIPVEIQ--GLTKVPFS 315 (1527)
Q Consensus 239 ~~~p~-~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~~~kVr~i~~~~g~~v~~a~~~~~v~I~--gl~~~~~~ 315 (1527)
...|+ +..|.+++..+| |+|++++|.+|++++||.|.+.+...+|++|+.+ ++++..|.||+.+.+. |-.+-..+
T Consensus 5 ~~kp~~R~~Id~vf~i~G-gtVvtGtV~sG~i~~Gd~v~~~p~~~~VksIq~~-~~~v~~a~~G~~v~l~L~~~~~di~r 82 (91)
T d1xe1a_ 5 SKKPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKVKGPSGIGGIVRIERN-REKVEFAIAGDRIGISIEGKIGKVKK 82 (91)
T ss_dssp CSSCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEEECSSCEEEEEEEEET-TEEESEEETTCEEEEEEESCCCCCCT
T ss_pred cCCCccEeeEEEEEEECC-cEEEEEEEeeCCcCCCCEEEECCccEEEEEEEEc-ceEhhhhhhcceeEEEEcCCcCCcCC
Confidence 45565 889999999999 9999999999999999999998888999999754 4678888888877654 52223489
Q ss_pred CCeEEEeC
Q psy1758 316 GEELFVIL 323 (1527)
Q Consensus 316 G~~~~~~~ 323 (1527)
|+++-...
T Consensus 83 GdvL~~~~ 90 (91)
T d1xe1a_ 83 GDVLEIYQ 90 (91)
T ss_dssp TCEEEEEC
T ss_pred CCEEEecc
Confidence 99887654
|
| >d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=4.1e-05 Score=70.06 Aligned_cols=80 Identities=18% Similarity=0.124 Sum_probs=63.5
Q ss_pred CCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecce----eeeEeEeeccCCceeeecCCCcceEe--cCCCCCC
Q psy1758 240 TTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGAS----YGRIRSMLNENGKNILEAGPSIPVEI--QGLTKVP 313 (1527)
Q Consensus 240 ~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~----~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~~ 313 (1527)
+.|++..|.+.+..++.|+|+++++.+|++++||.+.+.+. ..+|++|+.+ .+++..|.||+.+.+ .|++...
T Consensus 3 d~P~rlpId~vf~i~G~GtVvtG~v~~G~i~~Gd~v~i~p~~~~~~~~vksi~~~-~~~~~~a~aG~~v~l~L~gi~~~~ 81 (92)
T d1efca1 3 DKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMF-RKLLDEGRAGENVGVLLRGIKREE 81 (92)
T ss_dssp GSCCEEECCEEEECTTSCEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEEET-TEEESEEETTCEEEEEETTCCGGG
T ss_pred CCCEEEEEEEEEEcCCeEEEEEEEeccCeEcCCCEEEEEcCCCCcEEEEEEEEEC-CcCccccCCCCEEEEEEcCCCHHH
Confidence 56899999999999999999999999999999999876432 3579999655 467888888876654 5665543
Q ss_pred -CCCCeEE
Q psy1758 314 -FSGEELF 320 (1527)
Q Consensus 314 -~~G~~~~ 320 (1527)
.+|+++.
T Consensus 82 i~rG~vl~ 89 (92)
T d1efca1 82 IERGQVLA 89 (92)
T ss_dssp CCTTCEEE
T ss_pred cCCccEEe
Confidence 6888764
|
| >d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.67 E-value=6.2e-05 Score=69.20 Aligned_cols=83 Identities=12% Similarity=0.103 Sum_probs=67.2
Q ss_pred CCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEe--cCCCCCC-C
Q psy1758 240 TTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEI--QGLTKVP-F 314 (1527)
Q Consensus 240 ~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~~-~ 314 (1527)
+.|++..|.+.+..++.|+|+++++.+|++++||.+.+.+ ...+|++|+.++ +.+.+|.+|+.+.+ .|++.-. .
T Consensus 1 dkP~rmpI~~vf~i~g~GtVvtG~v~~G~i~~Gd~v~i~P~~~~~~VksI~~~~-~~~~~a~aG~~v~l~l~~i~~~~i~ 79 (94)
T d1f60a1 1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHH-EQLEQGVPGDNVGFNVKNVSVKEIR 79 (94)
T ss_dssp TSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEETT-EECSCBCTTCEEEEEESSCCTTTSC
T ss_pred CCCEEEEEEEEEEeCCeeEEEEEeeecccCCCCCEEEECcCCceEEEEEEEEcC-cCcCEecCCCeEEEEEeCccHHhcC
Confidence 4689999999999999999999999999999999998854 457999997654 67888888876655 5666433 7
Q ss_pred CCCeEEEeC
Q psy1758 315 SGEELFVIL 323 (1527)
Q Consensus 315 ~G~~~~~~~ 323 (1527)
+|+++.-..
T Consensus 80 rG~vl~~~~ 88 (94)
T d1f60a1 80 RGNVCGDAK 88 (94)
T ss_dssp TTCEEEETT
T ss_pred CCCEEECCC
Confidence 999886443
|
| >d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.65 E-value=2.9e-05 Score=75.54 Aligned_cols=62 Identities=21% Similarity=0.273 Sum_probs=56.1
Q ss_pred EEEEcCCCCeEEEEEEeeeEEeeCCeEEEeeCCeEEEEEEeceecccccccceeecCccccccchh
Q psy1758 480 QVILVNKVSKIAGCYILEGLIRRDSKIRILRNKNIIWTGELDSLKRFKDNVKEVKAGFECERLSRI 545 (1527)
Q Consensus 480 ~vF~~~k~~~iaGc~V~~G~i~~~~~~~v~R~~~~i~~g~i~Slk~~k~~V~ev~~G~ecgr~~r~ 545 (1527)
.+|+.++ +.|.|++|.+|+++.|.++.+.-++ ..|+|.||+.++++++++.+|++|++.+..
T Consensus 13 ~vFr~~~-p~ivgv~V~sG~ik~G~~l~~~p~~---~~g~VksIq~~~~~v~~A~~G~~Vai~I~g 74 (128)
T d1g7sa2 13 LVFRQSK-PAIGGVEVLTGVIRQGYPLMNDDGE---TVGTVESMQDKGENLKSASRGQKVAMAIKD 74 (128)
T ss_dssp EEEECSS-SEEEEEEEEEEEEETTCEEECTTSC---EEEEEEEEEETTEEESEEETTCCEEEEEET
T ss_pred cEecCCC-CeEEEEEEeeeeecCCCEEEECCCC---ceEEEEEEEECCccccEEcCCCEEEEEEcC
Confidence 6999766 6899999999999999999887656 469999999999999999999999999965
|
| >d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2 {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor eEF-1alpha, domain 2 species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.63 E-value=6.1e-05 Score=69.51 Aligned_cols=85 Identities=24% Similarity=0.293 Sum_probs=68.6
Q ss_pred CCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcce--EecCCCCCC-
Q psy1758 239 VTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPV--EIQGLTKVP- 313 (1527)
Q Consensus 239 ~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v--~I~gl~~~~- 313 (1527)
.+.|++..|.+++..++.|+++++++.+|++++||.+.+.+ ...+|++|..++ +.+++|.+|+.+ .+.|++...
T Consensus 2 ~d~Plr~pI~~vf~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~-~~~~~a~aG~~v~l~l~~i~~~~i 80 (95)
T d1jnya1 2 VDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHH-TKMDKAEPGDNIGFNVRGVEKKDI 80 (95)
T ss_dssp GGSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEETT-EEESEECTTCEEEEEEESSCGGGC
T ss_pred CCcCEEEEEEEEEEcCCceeEEEEEEeeccccCCCEEEEEeCCceEEEEEEEecC-CccCEEeCCCcEEEEEEcCcHHhc
Confidence 46799999999999999999999999999999999998754 468999997764 578888888755 666776443
Q ss_pred CCCCeEEEeCC
Q psy1758 314 FSGEELFVILN 324 (1527)
Q Consensus 314 ~~G~~~~~~~~ 324 (1527)
.+|+++...++
T Consensus 81 ~rG~vl~~~~~ 91 (95)
T d1jnya1 81 KRGDVVGHPNN 91 (95)
T ss_dssp CTTCEEECTTS
T ss_pred CCCCEEECCCc
Confidence 79998764443
|
| >d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release factor ERF2, post-G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Eukaryotic peptide chain release factor ERF2, post-G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.57 E-value=8.2e-05 Score=68.61 Aligned_cols=83 Identities=17% Similarity=0.132 Sum_probs=66.0
Q ss_pred CCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEec--CCCCCCC
Q psy1758 239 VTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEIQ--GLTKVPF 314 (1527)
Q Consensus 239 ~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I~--gl~~~~~ 314 (1527)
.+.|++..|.+.+ ++.|++++++|.+|++++||.|.+.+ ...+|++|+.++.+++..|.+|+.+.+. |-.+--.
T Consensus 6 ~~~PlR~pV~d~~--kg~G~vv~G~v~sG~i~~gd~v~i~P~~~~~~Vk~I~~~~~~~v~~a~aGd~V~l~l~~~~~di~ 83 (95)
T d1r5ba1 6 VNAPFIMPIASKY--KDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDDSDVQ 83 (95)
T ss_dssp HTSCCEEECCEEE--ESSSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEEEEESCCTTCC
T ss_pred CCCCEEEEEEEEE--cCCCEEEEEEEeeCeEeCCCEEEEecCCCEEEEEEEEEEccccccCcCCCCEEEEEEcCcccccC
Confidence 3578999998888 47899999999999999999998854 4679999987677788899999887776 4332237
Q ss_pred CCCeEEEeC
Q psy1758 315 SGEELFVIL 323 (1527)
Q Consensus 315 ~G~~~~~~~ 323 (1527)
+|+++....
T Consensus 84 rG~vl~~~~ 92 (95)
T d1r5ba1 84 TGYVLTSTK 92 (95)
T ss_dssp TTCEEECSS
T ss_pred CCCEEEcCC
Confidence 999876443
|
| >d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=97.56 E-value=9.2e-05 Score=68.62 Aligned_cols=82 Identities=16% Similarity=0.111 Sum_probs=64.8
Q ss_pred CCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEe--cce--eeeEeEeeccCCceeeecCCCcceE--ecCCCC
Q psy1758 238 PVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVA--GAS--YGRIRSMLNENGKNILEAGPSIPVE--IQGLTK 311 (1527)
Q Consensus 238 ~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~--g~~--~~kVr~i~~~~g~~v~~a~~~~~v~--I~gl~~ 311 (1527)
+.+.|++..|.+.+..++.|+|+++++.+|++++||.+.+ .+. ..+|++|+. +.+++..|.||+.+. +.|++.
T Consensus 3 ~~d~Pfr~pId~vf~i~G~GtVvtG~v~~G~i~~gd~v~~~~~~~~~~~~V~si~~-~~~~~~~a~aG~~v~l~l~gi~~ 81 (98)
T d1d2ea1 3 DLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEM-FHKSLDRAEAGDNLGALVRGLKR 81 (98)
T ss_dssp CTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEE-TTEEESEEETTCEEEEEESSCCG
T ss_pred CCCCCEEEEEEEEEEeCCcEEEEecceeeeeEeCCCEEEEccCCCCeeEEEEEEEE-eccEeccCCCCCEEEEEEcCCCH
Confidence 4578999999999999999999999999999999999854 232 457999965 456788888887664 456654
Q ss_pred CC-CCCCeEE
Q psy1758 312 VP-FSGEELF 320 (1527)
Q Consensus 312 ~~-~~G~~~~ 320 (1527)
-. .+|+++.
T Consensus 82 ~~i~rG~vl~ 91 (98)
T d1d2ea1 82 EDLRRGLVMA 91 (98)
T ss_dssp GGCCTTCEEE
T ss_pred HHccCccEEe
Confidence 33 6898775
|
| >d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor Tu (EF-Tu), domain 2 species: Thermus thermophilus [TaxId: 274]
Probab=97.37 E-value=0.00028 Score=65.54 Aligned_cols=83 Identities=20% Similarity=0.186 Sum_probs=66.6
Q ss_pred CCCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEec---c--eeeeEeEeeccCCceeeecCCCcceE--ecCC
Q psy1758 237 APVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAG---A--SYGRIRSMLNENGKNILEAGPSIPVE--IQGL 309 (1527)
Q Consensus 237 ~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g---~--~~~kVr~i~~~~g~~v~~a~~~~~v~--I~gl 309 (1527)
.+.+.|++..|.+++..++.|++++++|.+|++++||.+.+. + ...+|++|+. +.+.+.+|.+|+.+. +.|+
T Consensus 3 R~~~~p~r~~Id~vf~~~g~Gtvv~G~v~~G~i~~gd~v~i~~~~p~~~~~~V~sI~~-~~~~~~~a~aG~~v~l~l~gi 81 (100)
T d2c78a1 3 RDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEM-HRKTLQEGIAGDNVGVLLRGV 81 (100)
T ss_dssp CCCSSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEE-TTEEESEEETTCEEEEEESSC
T ss_pred CCCCCCEEEEEEEEEEcCCcEEEEEEEEeccEEECCCEeEEEeecCCCcEEEEEEEEE-CCccccEEeCCCeEEEEEcCC
Confidence 456789999999999999999999999999999999999874 2 3468999975 456788888887664 5566
Q ss_pred CCCC-CCCCeEE
Q psy1758 310 TKVP-FSGEELF 320 (1527)
Q Consensus 310 ~~~~-~~G~~~~ 320 (1527)
+... .+|+++.
T Consensus 82 ~~~~i~rG~vl~ 93 (100)
T d2c78a1 82 SREEVERGQVLA 93 (100)
T ss_dssp CTTTCCTTCEEE
T ss_pred CHHHccCcCEEE
Confidence 6544 6898775
|
| >d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor 2 (eEF-2), domain II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.37 E-value=0.00025 Score=69.90 Aligned_cols=84 Identities=14% Similarity=0.119 Sum_probs=68.8
Q ss_pred CCCCCCCceEEEEEeecCCCce-EEEEEeeccEEEeccEEEe-cce----------eeeEeEeeccCC---ceeeecCCC
Q psy1758 237 APVTTPAKGVIIESRLDKGKGP-VATVLIQSGTLRCSDIVVA-GAS----------YGRIRSMLNENG---KNILEAGPS 301 (1527)
Q Consensus 237 ~~~~~p~~~~v~~~~~~~~~G~-v~~~~v~~G~l~~gd~vv~-g~~----------~~kVr~i~~~~g---~~v~~a~~~ 301 (1527)
.+++.|+.++|.+...++..|. ++.++|++|+|++||.|++ ++. ..+|..++...| .++.+|.+|
T Consensus 29 cd~~~Pl~~~v~k~~~~~~~g~~~~~gRV~SGtl~~G~~v~vl~~~~~~~~~~~~~~~~i~~i~~~~g~~~~~v~~a~AG 108 (138)
T d1n0ua1 29 CDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAG 108 (138)
T ss_dssp TCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETT
T ss_pred cCCCCCEEEEEEeeccCCCCCEEEEEEEEEeceEcCCCEEEEecCCcccccccccceeeeeeeEEEecCceeeEeEEecC
Confidence 4678999999999999999999 5789999999999999966 432 246777776666 568899999
Q ss_pred cceEecCCCCCCCCCCeEE
Q psy1758 302 IPVEIQGLTKVPFSGEELF 320 (1527)
Q Consensus 302 ~~v~I~gl~~~~~~G~~~~ 320 (1527)
+.+.|.|+++...-|+.+.
T Consensus 109 dIvai~Gl~~~i~k~~Tl~ 127 (138)
T d1n0ua1 109 NIIGLVGIDQFLLKTGTLT 127 (138)
T ss_dssp CEEEEESCTTTCCSSEEEE
T ss_pred cEEEEeccccceeccceec
Confidence 9999999998655576654
|
| >d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit, domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=97.27 E-value=0.00039 Score=66.65 Aligned_cols=83 Identities=24% Similarity=0.188 Sum_probs=63.1
Q ss_pred CCCCCCCceEEEEEeecCCCc--------eEEEEEeeccEEEeccEEEecce--------------eeeEeEeeccCCce
Q psy1758 237 APVTTPAKGVIIESRLDKGKG--------PVATVLIQSGTLRCSDIVVAGAS--------------YGRIRSMLNENGKN 294 (1527)
Q Consensus 237 ~~~~~p~~~~v~~~~~~~~~G--------~v~~~~v~~G~l~~gd~vv~g~~--------------~~kVr~i~~~~g~~ 294 (1527)
.+.+.|++..|..++..++.| .|++++|.+|+|++||.|.+.+. ..+|++|+.+ +++
T Consensus 3 R~~~~p~r~~Idr~F~v~g~Gt~~~~~~G~VvtGtv~sG~ik~GD~v~i~P~~~~~~~~~~~~~~~~~~V~sI~~~-~~~ 81 (121)
T d1kk1a1 3 RDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAG-GQF 81 (121)
T ss_dssp CCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEET-TEE
T ss_pred CCCCCCcEEEEEEEEEecCCCCccccCcceEEEeeecCCEEecCCEEEECCCCccccccceeceeeeeEEEEEEEC-CCC
Confidence 356789999999999775555 59999999999999999987553 2589999765 457
Q ss_pred eeecCCCcceEec-----CCCCCC-CCCCeEE
Q psy1758 295 ILEAGPSIPVEIQ-----GLTKVP-FSGEELF 320 (1527)
Q Consensus 295 v~~a~~~~~v~I~-----gl~~~~-~~G~~~~ 320 (1527)
+++|.||+.+.|. ++.+-. .+|+++.
T Consensus 82 v~~A~~G~~Vgv~l~~d~~i~r~Dv~rG~Vl~ 113 (121)
T d1kk1a1 82 VEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVG 113 (121)
T ss_dssp ESEECSSSCEEEEESSCGGGTGGGTTTTCEEE
T ss_pred cCEEeCCCeEEEEecccCCcchhHhcceeEEE
Confidence 9999999988875 222222 4677654
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=97.26 E-value=0.00017 Score=79.93 Aligned_cols=134 Identities=19% Similarity=0.170 Sum_probs=85.3
Q ss_pred HHHHHHhhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcE
Q psy1758 129 FTAMRARGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPF 208 (1527)
Q Consensus 129 f~~~~~~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v 208 (1527)
........+..+|+++.|+||.++...........++ +.|+|+|+||+|+.+... ......... ....++
T Consensus 5 a~r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~--~Kp~IlVlNK~DLv~~~~---~~~w~~~f~-----~~~~~~ 74 (273)
T d1puja_ 5 ARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK--NKPRIMLLNKADKADAAV---TQQWKEHFE-----NQGIRS 74 (273)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS--SSCEEEEEECGGGSCHHH---HHHHHHHHH-----TTTCCE
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHc--CCCeEEEEECccCCchHH---HHHHHHHHH-----hcCCcc
Confidence 3455667889999999999999987766655544443 789999999999987432 122211110 122478
Q ss_pred EEeeccCCCChhHHHHHHHHHHHH----HhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEecc
Q psy1758 209 ISISAKTGVGINKLLENISLQAEI----LELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSD 273 (1527)
Q Consensus 209 ~~iSAktg~gI~eL~~~l~~~~~~----~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd 273 (1527)
+.+||+++.|+.++.+.+...... .........+ .-+.+-..++-|+.++.+.+......++|+
T Consensus 75 i~isa~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~v~vvG~PNvGKSsliN~L~~~~~~~~~~ 142 (273)
T d1puja_ 75 LSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRA-IRALIIGIPNVGKSTLINRLAKKNIAKTGD 142 (273)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCC-EEEEEEESTTSSHHHHHHHHHTSCCC----
T ss_pred ceeecccCCCccccchhhhhhhhhhhhhhhhccCCCCc-eEEEEEecCccchhhhhhhhhccceEEECC
Confidence 999999999999988877543211 1112222222 224455677888888888777666666665
|
| >d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Elongation factor SelB, domains 2 and 4 species: Methanococcus maripaludis [TaxId: 39152]
Probab=97.21 E-value=3.6e-05 Score=70.58 Aligned_cols=82 Identities=22% Similarity=0.201 Sum_probs=66.0
Q ss_pred CCCCCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecce--eeeEeEeeccCCceeeecCCCcceEe--cCCCCCC
Q psy1758 238 PVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGAS--YGRIRSMLNENGKNILEAGPSIPVEI--QGLTKVP 313 (1527)
Q Consensus 238 ~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~~--~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~~~~ 313 (1527)
+.+.|++..|.+++..++.|+|++++|.+|++++||.|.+.+. ..+|++|+. +++++.+|.||+.+.+ .|++.-.
T Consensus 2 ~~~~~fr~~I~~vf~i~g~G~VvtG~v~sG~i~~gd~v~i~P~~~~~~VksI~~-~~~~~~~a~aGd~v~l~L~gi~~~~ 80 (92)
T d1wb1a1 2 NTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQY-FKESVMEAKAGDRVGMAIQGVDAKQ 80 (92)
T ss_dssp CSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCG-GGSCBCCCCSSCCCCEECSSCCSSC
T ss_pred CCCCCEEEEEEEEEEeCCcEEEEEeEEeeceEecCCeEEEeccCCceEEEeeeE-cCceeeEeCCCCEEEEEEcCCCHHH
Confidence 4567899999999999999999999999999999999998654 579999964 5567888888876654 5665433
Q ss_pred -CCCCeEE
Q psy1758 314 -FSGEELF 320 (1527)
Q Consensus 314 -~~G~~~~ 320 (1527)
.+|+++.
T Consensus 81 i~rG~vl~ 88 (92)
T d1wb1a1 81 IYRGCILT 88 (92)
T ss_dssp CCSSCBCC
T ss_pred cCCcCEEe
Confidence 6788654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.21 E-value=0.00046 Score=72.89 Aligned_cols=150 Identities=18% Similarity=0.239 Sum_probs=75.7
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhh---------hhcccceeEeeeeEEE-----------
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNE---------IEKERGITIFSKNCSI----------- 980 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~---------~E~erGiTi~~~~~~~----------- 980 (1527)
...-|+++|++|+||||.+-.|..... .+...+.--..|... .-+.-|+.+......-
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~--~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~ 88 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK--KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 88 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH--HTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH--HCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHHH
Confidence 445688999999999999888864321 111111100011100 0112233322111110
Q ss_pred --EecCeEEEEEeCCCCCCch------HHHHHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCC
Q psy1758 981 --EYNGTRINIIDTPGHADFG------GEVERIL--SMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRS 1050 (1527)
Q Consensus 981 --~~~~~~iniiDTPGh~df~------~ev~~~l--~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~ 1050 (1527)
...++.+.||||||...+. .++.... ...+-.+||+||+.|... ...........++.. ++++|+|-.
T Consensus 89 ~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~-~~~~~~~~~~~~~~~-lI~TKlDet 166 (211)
T d1j8yf2 89 KFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA-YDLASKFNQASKIGT-IIITKMDGT 166 (211)
T ss_dssp HHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH-HHHHHHHHHHCTTEE-EEEECTTSC
T ss_pred HhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcch-HHHHhhhhcccCcce-EEEecccCC
Confidence 1246789999999954332 2333332 335789999999876433 333444444455544 558999974
Q ss_pred CCChhhhHHHHHHHHhhhcccccccCCcEEEeccccCC
Q psy1758 1051 NARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088 (1527)
Q Consensus 1051 ~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~ 1088 (1527)
. +.-..++-.. ....|+.|+| .|.
T Consensus 167 ~-~~G~~l~~~~-----------~~~lPi~~it--~Gq 190 (211)
T d1j8yf2 167 A-KGGGALSAVA-----------ATGATIKFIG--TGE 190 (211)
T ss_dssp S-CHHHHHHHHH-----------TTTCCEEEEE--CSS
T ss_pred C-cccHHHHHHH-----------HHCcCEEEEe--CCC
Confidence 3 3333333221 2356888888 465
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.09 E-value=0.00042 Score=73.32 Aligned_cols=151 Identities=18% Similarity=0.192 Sum_probs=80.6
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhh---h------hcccceeEeeeeEE-----------
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNE---I------EKERGITIFSKNCS----------- 979 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~---~------E~erGiTi~~~~~~----------- 979 (1527)
.....|+++|++|+||||.+-.|.... ..++..+.--.+|... . -+.-|+.+......
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~--~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~ 86 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMF--VDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 86 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH--HHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH--HHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHH
Confidence 445678999999999999988886432 1111111100111110 0 11223333211110
Q ss_pred --EEecCeEEEEEeCCCCCCchHHHHHH----HHh--------cCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEe
Q psy1758 980 --IEYNGTRINIIDTPGHADFGGEVERI----LSM--------VDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVN 1045 (1527)
Q Consensus 980 --~~~~~~~iniiDTPGh~df~~ev~~~----l~~--------aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviN 1045 (1527)
...+++.+.||||||...+..+.... ... .+-.+||+||+.+.. ............++. =++++
T Consensus 87 ~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~-~~~~~~~~~~~~~~~-~lI~T 164 (213)
T d1vmaa2 87 AHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQN-GLVQAKIFKEAVNVT-GIILT 164 (213)
T ss_dssp HHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHH-HHHHHHHHHHHSCCC-EEEEE
T ss_pred HHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcc-hhhhhhhhccccCCc-eEEEe
Confidence 00136789999999966655444332 222 367999999986522 222333333444533 46689
Q ss_pred ccCCCCCChhhhHHHHHHHHhhhcccccccCCcEEEeccccCC
Q psy1758 1046 KIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088 (1527)
Q Consensus 1046 KiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~ 1088 (1527)
|+|-. ++.-..++.... ...|+.|++ +|+
T Consensus 165 KlDe~-~~~G~~l~~~~~-----------~~~Pi~~i~--~Gq 193 (213)
T d1vmaa2 165 KLDGT-AKGGITLAIARE-----------LGIPIKFIG--VGE 193 (213)
T ss_dssp CGGGC-SCTTHHHHHHHH-----------HCCCEEEEE--CSS
T ss_pred cccCC-CcccHHHHHHHH-----------HCCCEEEEe--CCC
Confidence 99964 444444443322 246888887 455
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.07 E-value=0.00044 Score=73.51 Aligned_cols=116 Identities=28% Similarity=0.327 Sum_probs=71.7
Q ss_pred ccccCEEEEEEeCCCC-CcHH-HHHHHHHHHHcCCCEEEEEEcccCCcchhHHHHHHHhhhcccccccCCCCcEEEeecc
Q psy1758 137 AKVTDIVVLVVAADDG-VMPQ-TREAIAHAKISGVPLIVAINKIDKLDINLDRIKQDLISEQVIPEEYGGASPFISISAK 214 (1527)
Q Consensus 137 ~~~aD~~IlVvda~~g-~~~q-t~e~i~~~~~~~vpiIvviNKiDl~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAk 214 (1527)
+.+.|.+++|+++.+. .... ....+..+...++|.+||+||+||.+.+......... ..+....+++.+||+
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~------~~~~~~~~v~~vSa~ 81 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELE------EIYSGLYPIVKTSAK 81 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHH------HHHTTTSCEEECCTT
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCcccCCHHHHHHHHHhh------cccccceeEEEeccc
Confidence 4678999999999873 3333 3345666778899999999999998643222111111 112223689999999
Q ss_pred CCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEecc
Q psy1758 215 TGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSD 273 (1527)
Q Consensus 215 tg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd 273 (1527)
++.|+++|.+.+. ....++-.....|+.++.+.+.-+-.++.|+
T Consensus 82 ~~~g~~~L~~~l~---------------~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~ 125 (225)
T d1u0la2 82 TGMGIEELKEYLK---------------GKISTMAGLSGVGKSSLLNAINPGLKLRVSE 125 (225)
T ss_dssp TCTTHHHHHHHHS---------------SSEEEEECSTTSSHHHHHHHHSTTCCCC---
T ss_pred cchhHhhHHHHhc---------------CCeEEEECCCCCCHHHHHHhhcchhhhhccC
Confidence 9999999988762 1223444444555555555444333334443
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.00 E-value=0.001 Score=70.24 Aligned_cols=94 Identities=22% Similarity=0.162 Sum_probs=51.8
Q ss_pred CeEEEEEeCCChhh----H--HHHHH--hhccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCcchhH
Q psy1758 115 HGSITFLDTPGHEA----F--TAMRA--RGAKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLDINLD 186 (1527)
Q Consensus 115 ~~~i~~iDTPG~e~----f--~~~~~--~~~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~~~~~ 186 (1527)
+..+.|+||||... - ..... ......+-++||+|+..+... ...........++ -=+++||.|-... .-
T Consensus 94 ~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~-~~~~~~~~~~~~~-~~lI~TKlDet~~-~G 170 (211)
T d1j8yf2 94 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA-YDLASKFNQASKI-GTIIITKMDGTAK-GG 170 (211)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH-HHHHHHHHHHCTT-EEEEEECTTSCSC-HH
T ss_pred CCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcch-HHHHhhhhcccCc-ceEEEecccCCCc-cc
Confidence 45799999999311 1 11111 222346789999999875432 2223333333343 3466999997542 22
Q ss_pred HHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 187 RIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
....... ....|+..+| +|++|++|
T Consensus 171 ~~l~~~~---------~~~lPi~~it--~Gq~v~DL 195 (211)
T d1j8yf2 171 GALSAVA---------ATGATIKFIG--TGEKIDEL 195 (211)
T ss_dssp HHHHHHH---------TTTCCEEEEE--CSSSTTCE
T ss_pred HHHHHHH---------HHCcCEEEEe--CCCCcccC
Confidence 2222111 1235777777 58888764
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.94 E-value=0.003 Score=66.55 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=49.9
Q ss_pred CeEEEEEeCCCh----hhHHHHHH---hhc-----cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCc
Q psy1758 115 HGSITFLDTPGH----EAFTAMRA---RGA-----KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLD 182 (1527)
Q Consensus 115 ~~~i~~iDTPG~----e~f~~~~~---~~~-----~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~ 182 (1527)
+..+.|+||||- +....... ... ...+-.+||+|+..+. ....+........+ +-=++++|.|-..
T Consensus 93 ~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~-~~~~~~~~~~~~~~-~~~lI~TKlDe~~ 170 (213)
T d1vmaa2 93 NKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ-NGLVQAKIFKEAVN-VTGIILTKLDGTA 170 (213)
T ss_dssp TCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH-HHHHHHHHHHHHSC-CCEEEEECGGGCS
T ss_pred CCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCc-chhhhhhhhccccC-CceEEEecccCCC
Confidence 446899999992 11111111 111 1257899999998642 22223333333333 3457789999643
Q ss_pred chhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 183 INLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 183 ~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
..-......... ..|+..++ +|+++++|
T Consensus 171 -~~G~~l~~~~~~---------~~Pi~~i~--~Gq~v~Dl 198 (213)
T d1vmaa2 171 -KGGITLAIAREL---------GIPIKFIG--VGEKAEDL 198 (213)
T ss_dssp -CTTHHHHHHHHH---------CCCEEEEE--CSSSGGGE
T ss_pred -cccHHHHHHHHH---------CCCEEEEe--CCCCcccC
Confidence 222222221111 24777777 58888764
|
| >d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=96.87 E-value=0.0014 Score=59.57 Aligned_cols=82 Identities=16% Similarity=0.086 Sum_probs=63.6
Q ss_pred CCCceEEEEEeecCCCceEEEEEeeccEEEeccEEEecc--eeeeEeEeeccCCceeeecCCCcceEecCCCCCC-CCCC
Q psy1758 241 TPAKGVIIESRLDKGKGPVATVLIQSGTLRCSDIVVAGA--SYGRIRSMLNENGKNILEAGPSIPVEIQGLTKVP-FSGE 317 (1527)
Q Consensus 241 ~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd~vv~g~--~~~kVr~i~~~~g~~v~~a~~~~~v~I~gl~~~~-~~G~ 317 (1527)
.+++..|..+...++.++..+++|.+|++++||.|++.+ ...+|++|+.+ ++.+++|.+|+.+.+..-.... .+|+
T Consensus 5 ~~fr~pVQ~V~r~~~~~r~~~G~v~sG~v~~Gd~v~i~Psg~~~~Vk~I~~~-~~~~~~a~~G~~v~l~L~~~~di~RGd 83 (92)
T d1zunb1 5 TDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTF-EGELEQAGPGQAVTLTMEDEIDISRGD 83 (92)
T ss_dssp SSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEET-TEEESEECTTCEEEEEESSCCCCCTTC
T ss_pred CCeEEeEEEEEccCCCccEEEEEEcccEEecCCEEEECCCCceEEEeEEEEc-CcccCEEcCCCEEEEEEcCccccCCCC
Confidence 467777777776666678899999999999999998854 45899999654 4689999999988877444343 6899
Q ss_pred eEEEeC
Q psy1758 318 ELFVIL 323 (1527)
Q Consensus 318 ~~~~~~ 323 (1527)
++....
T Consensus 84 vl~~~~ 89 (92)
T d1zunb1 84 LLVHAD 89 (92)
T ss_dssp EEEETT
T ss_pred EEecCC
Confidence 887543
|
| >d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit, domain II {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.87 E-value=0.001 Score=63.36 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=57.6
Q ss_pred CCCCCCceEEEEEeecCCCce--------EEEEEeeccEEEeccEEEecce--------------eeeEeEeeccCCcee
Q psy1758 238 PVTTPAKGVIIESRLDKGKGP--------VATVLIQSGTLRCSDIVVAGAS--------------YGRIRSMLNENGKNI 295 (1527)
Q Consensus 238 ~~~~p~~~~v~~~~~~~~~G~--------v~~~~v~~G~l~~gd~vv~g~~--------------~~kVr~i~~~~g~~v 295 (1527)
+.+.|+...|..++..++.|+ |++++|.+|+|++||.|.+.+. ..+|++|+. +++.+
T Consensus 2 ~~~~p~~~~I~r~F~i~~~gt~~~~~~G~VvtGtv~sG~i~~GD~v~i~P~~~~~~~~~~~~~~~~t~V~sI~~-~~~~v 80 (118)
T d1s0ua1 2 DPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAA-GNTIL 80 (118)
T ss_dssp CTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEE-TTEEE
T ss_pred CCCCCcEEEEEeEEcccCCCCccccccccEEEeeecccEEeeCCEEEECCCCcccccceeeeeeeeEEEEEEEE-CCccc
Confidence 457789999999997766555 9999999999999999988553 358999966 55689
Q ss_pred eecCCCcceEec
Q psy1758 296 LEAGPSIPVEIQ 307 (1527)
Q Consensus 296 ~~a~~~~~v~I~ 307 (1527)
++|.||+.+.|.
T Consensus 81 ~~A~aG~~V~i~ 92 (118)
T d1s0ua1 81 RKAHPGGLIGVG 92 (118)
T ss_dssp SEECSSSCEEEE
T ss_pred CEEeCCCEEEEE
Confidence 999999999886
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.0034 Score=65.99 Aligned_cols=94 Identities=19% Similarity=0.164 Sum_probs=50.2
Q ss_pred CeEEEEEeCCCh--h--hHHHHHH---hhc-----cccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCc
Q psy1758 115 HGSITFLDTPGH--E--AFTAMRA---RGA-----KVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLD 182 (1527)
Q Consensus 115 ~~~i~~iDTPG~--e--~f~~~~~---~~~-----~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~ 182 (1527)
+..+.|+||||- . ....... ... ...+-.+||+|+..+.. ...+........++ -=++++|.|-..
T Consensus 91 ~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~-~~~~~~~~~~~~~~-~~lIlTKlDe~~ 168 (211)
T d2qy9a2 91 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN-AVSQAKLFHEAVGL-TGITLTKLDGTA 168 (211)
T ss_dssp TCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHH-HHHHHHHHHHHSCC-CEEEEECCTTCT
T ss_pred CCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcc-hHHHHhhhhhccCC-ceEEEeecCCCC
Confidence 346899999992 1 1111111 112 13578999999987532 22233333333333 456789999643
Q ss_pred chhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHH
Q psy1758 183 INLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKL 222 (1527)
Q Consensus 183 ~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL 222 (1527)
. .-......... ..|+..+| +|++|++|
T Consensus 169 ~-~G~~l~~~~~~---------~~Pi~~i~--~Gq~v~Dl 196 (211)
T d2qy9a2 169 K-GGVIFSVADQF---------GIPIRYIG--VGERIEDL 196 (211)
T ss_dssp T-TTHHHHHHHHH---------CCCEEEEE--CSSSGGGE
T ss_pred C-ccHHHHHHHHH---------CCCEEEEe--CCCCcccC
Confidence 1 11222211111 24777777 68888664
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.0012 Score=69.53 Aligned_cols=149 Identities=19% Similarity=0.264 Sum_probs=78.7
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhh---------hhcccceeEeeeeEEE------------
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNE---------IEKERGITIFSKNCSI------------ 980 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~---------~E~erGiTi~~~~~~~------------ 980 (1527)
..-|+++|++|+||||.+-.|..... .++..+.--.+|... .-+.-|+.+......-
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~--~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~ 86 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 86 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH--TTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH--HCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHH
Confidence 34689999999999999999974311 111111100111110 1112233332211100
Q ss_pred -EecCeEEEEEeCCCCCCch----HHHHHHHHh--------cCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEecc
Q psy1758 981 -EYNGTRINIIDTPGHADFG----GEVERILSM--------VDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKI 1047 (1527)
Q Consensus 981 -~~~~~~iniiDTPGh~df~----~ev~~~l~~--------aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKi 1047 (1527)
..+++.+.||||||..... .++....+. .+-.+||+||..|... ...........++. =++++|+
T Consensus 87 a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~-~~~~~~~~~~~~~~-~lIlTKl 164 (211)
T d2qy9a2 87 AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA-VSQAKLFHEAVGLT-GITLTKL 164 (211)
T ss_dssp HHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHH-HHHHHHHHHHSCCC-EEEEECC
T ss_pred HHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcch-HHHHhhhhhccCCc-eEEEeec
Confidence 0135689999999954433 333333222 3589999999876322 23333444444543 4668999
Q ss_pred CCCCCChhhhHHHHHHHHhhhcccccccCCcEEEeccccCC
Q psy1758 1048 DRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088 (1527)
Q Consensus 1048 D~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~ 1088 (1527)
|-. ++.-.+++-... ...|+.|++ .|+
T Consensus 165 De~-~~~G~~l~~~~~-----------~~~Pi~~i~--~Gq 191 (211)
T d2qy9a2 165 DGT-AKGGVIFSVADQ-----------FGIPIRYIG--VGE 191 (211)
T ss_dssp TTC-TTTTHHHHHHHH-----------HCCCEEEEE--CSS
T ss_pred CCC-CCccHHHHHHHH-----------HCCCEEEEe--CCC
Confidence 974 334444433322 246888888 554
|
| >d1vioa1 d.265.1.3 (A:58-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase RsuA/RluD domain: Ribosomal small subunit pseudouridine 516 synthase RsuA species: Haemophilus influenzae [TaxId: 727]
Probab=96.72 E-value=0.00029 Score=72.47 Aligned_cols=143 Identities=23% Similarity=0.326 Sum_probs=82.5
Q ss_pred EEEEeCCCCCCHHH-------HHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccc----cCCCcEEEEEEEE
Q psy1758 665 VLLLDKPYGLSSNN-------ALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYL----SEADKYYEAIIHL 733 (1527)
Q Consensus 665 ~~~v~Kp~g~ts~~-------~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~----~~~~K~Y~~~~~~ 733 (1527)
.+++|||+|+-|+- +.+.+.... ..++...|.||..+||||+++-. .++++.+ ....|.|.+++.-
T Consensus 5 Yi~lNKP~G~~~~~~~~~~~~v~~~l~~~~-~~~l~~V~RLD~~TsGLll~t~d--~~~~~~l~~~~~~~~k~y~v~v~~ 81 (174)
T d1vioa1 5 YFMLNKPQGCVCSNDDGDYPTIYQFFDYPL-AGKLHSAGRLDVDTTGLVLLTDD--GQWSHRITSPKHHCEKTYLVTLAD 81 (174)
T ss_dssp EEEEEECTTCBSSCCC--CCBGGGGSCTTG-GGGCEESSCCCTTCEEEEEEESC--HHHHHHHHCTTSCCCEEEEEEESS
T ss_pred EEEEECCCCEEeCCCCCCCCcHHHhCcccc-cCceEEEecCChhHhceEEEeec--ccccccccccccceeeeeeeEEec
Confidence 47899999985431 112222111 23577799999999999999743 2334444 4678899887742
Q ss_pred CccccCCCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEE
Q psy1758 734 GITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITII 813 (1527)
Q Consensus 734 G~~tdt~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~ 813 (1527)
+++.+.+...-. .+.++|+. . ...... ++.
T Consensus 82 --------------------~~~~~~~~~l~~--------------~v~~~g~~----------~--~~~~~~---~~~- 111 (174)
T d1vioa1 82 --------------------PVEENYSAACAE--------------GILLRGEK----------E--PTKPAK---LEI- 111 (174)
T ss_dssp --------------------CCCTTHHHHHHH--------------CCCCTTCS----------S--CCCCCE---EEE-
T ss_pred --------------------ccchhhHHHHhC--------------CceecCcc----------c--cceeee---ecc-
Confidence 122333332211 11222211 1 111111 111
Q ss_pred EEeCCeEEEEEEeccccc--HHHHHHHHHHHhCChhhhHHHhhcccCccccccccChh
Q psy1758 814 DYTIPYLTLRIHCSKGTY--IRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLNID 869 (1527)
Q Consensus 814 ~~~~~~~~~~v~cs~gtY--irsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~l~ 869 (1527)
.....+++....|.+ ||.++..+| -.+..|.|+++|+|++.+.+..-
T Consensus 112 ---~~~~~~~i~l~tGR~hQIR~~~~~~g------~pI~~L~Ri~~g~~~L~~~L~~G 160 (174)
T d1vioa1 112 ---LDDYNVNLTISEGRYHQVKRMFAALG------NKVVGLHRWKIGDVVLDESLEEG 160 (174)
T ss_dssp ---CSSSEEEEEESCCCTTHHHHHHHHTT------CCEEEEEEEEETTEECCTTCCTT
T ss_pred ---ccCcEEEEEEecccchHHHHHHHHcC------CEEEEEEEEEEcccccCCCCCCC
Confidence 123346677778886 888887764 34579999999999986655544
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.67 E-value=0.00041 Score=73.10 Aligned_cols=150 Identities=19% Similarity=0.222 Sum_probs=79.7
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhh---------hhcccceeEeeeeEE------------
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNE---------IEKERGITIFSKNCS------------ 979 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~---------~E~erGiTi~~~~~~------------ 979 (1527)
+.+.|+++|++|+||||.+-.|...... ++..+.--..|... .-+.-|+.+......
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~--~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~ 82 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQ 82 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHH
Confidence 3467899999999999998888643211 11111100011100 011122222111100
Q ss_pred -EEecCeEEEEEeCCCCCCchHH----HHHHHH--------hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEec
Q psy1758 980 -IEYNGTRINIIDTPGHADFGGE----VERILS--------MVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNK 1046 (1527)
Q Consensus 980 -~~~~~~~iniiDTPGh~df~~e----v~~~l~--------~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNK 1046 (1527)
....++.+.||||||...+..+ +..... ..+-.+||+||+.|. .............++.- ++++|
T Consensus 83 ~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~-~~~~~~~~~~~~~~~~~-lI~TK 160 (207)
T d1okkd2 83 AMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ-NGLEQAKKFHEAVGLTG-VIVTK 160 (207)
T ss_dssp HHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT-HHHHHHHHHHHHHCCSE-EEEEC
T ss_pred HHHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCc-hHHHHHHHhhhccCCce-EEEec
Confidence 0113678999999995544333 222222 236789999999874 33344444444555554 56899
Q ss_pred cCCCCCChhhhHHHHHHHHhhhcccccccCCcEEEeccccCC
Q psy1758 1047 IDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGY 1088 (1527)
Q Consensus 1047 iD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA~~g~ 1088 (1527)
+|-. ++.-..++-... ...|+.|+| +|+
T Consensus 161 lDet-~~~G~~l~~~~~-----------~~~Pi~~i~--~Gq 188 (207)
T d1okkd2 161 LDGT-AKGGVLIPIVRT-----------LKVPIKFVG--VGE 188 (207)
T ss_dssp TTSS-CCCTTHHHHHHH-----------HCCCEEEEE--CSS
T ss_pred cCCC-CCccHHHHHHHH-----------HCCCEEEEe--CCC
Confidence 9964 344444443322 246888887 454
|
| >d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit, domain II {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor eIF2 gamma subunit, domain II species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.67 E-value=0.0022 Score=60.62 Aligned_cols=68 Identities=21% Similarity=0.172 Sum_probs=55.4
Q ss_pred CCCCCceEEEEEeecCC--------CceEEEEEeeccEEEeccEEEecce--------------eeeEeEeeccCCceee
Q psy1758 239 VTTPAKGVIIESRLDKG--------KGPVATVLIQSGTLRCSDIVVAGAS--------------YGRIRSMLNENGKNIL 296 (1527)
Q Consensus 239 ~~~p~~~~v~~~~~~~~--------~G~v~~~~v~~G~l~~gd~vv~g~~--------------~~kVr~i~~~~g~~v~ 296 (1527)
...|+..+|..++...+ +|.|+++++.+|+|++||.|.+-+. ..+|++|+.+ +++++
T Consensus 3 ~~~~p~~~V~R~F~vn~pgt~~~~~~G~VvtGtv~~G~ikvGD~i~i~P~~~~~~~~~~~~~~~~t~V~sI~~~-~~~v~ 81 (114)
T d2qn6a1 3 LSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFG-DEEFK 81 (114)
T ss_dssp TTSCCEEEEEEEECCCCTTCBGGGCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEET-TEEES
T ss_pred CCCCceEEEeccccccCCCCCcccccceEEEEEEccccEEeCCEEEEcCCCccccCceeeeeecceEEEEEEEC-CcccC
Confidence 45678889999887655 4559999999999999999987442 3689999665 56899
Q ss_pred ecCCCcceEec
Q psy1758 297 EAGPSIPVEIQ 307 (1527)
Q Consensus 297 ~a~~~~~v~I~ 307 (1527)
+|.||+.+.|.
T Consensus 82 ~A~aG~~V~i~ 92 (114)
T d2qn6a1 82 EAKPGGLVAIG 92 (114)
T ss_dssp EECSSSCEEEE
T ss_pred EEeCCCEEEEE
Confidence 99999999885
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.60 E-value=0.0015 Score=69.21 Aligned_cols=83 Identities=22% Similarity=0.217 Sum_probs=56.8
Q ss_pred HhcCEEEEEEeCCCCCCh--hHHHHHHHHHHcCCccEEEEeccCCCCCChhhhHHHHHHHHhhhcccccccCCcEEEecc
Q psy1758 1007 SMVDNVLLLIDAVEGPMP--QTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSA 1084 (1527)
Q Consensus 1007 ~~aD~ailVVDa~~G~~~--qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~v~~~~~~~~~~l~~~~~~~~~pvi~~SA 1084 (1527)
++.|.+++|+++.++... .-.+.+-.+...|+|++||+||+|+.+.+ ..+.+...+... ...+|++++||
T Consensus 9 ANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~---~~~~~~~~~~~~-----~~~~~v~~vSa 80 (225)
T d1u0la2 9 ANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDED---DLRKVRELEEIY-----SGLYPIVKTSA 80 (225)
T ss_dssp ESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHH---HHHHHHHHHHHH-----TTTSCEEECCT
T ss_pred ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCcccCCHH---HHHHHHHhhccc-----ccceeEEEecc
Confidence 568999999988764322 23455667788999999999999996532 222222222111 12368999999
Q ss_pred ccCCcCCCcccccCCChhHHHHH
Q psy1758 1085 LHGYANENSKARQGNMIPLFEAI 1107 (1527)
Q Consensus 1085 ~~g~~~~~~~~~~~gi~~Ll~~i 1107 (1527)
++|. |++.|.+.+
T Consensus 81 ~~~~----------g~~~L~~~l 93 (225)
T d1u0la2 81 KTGM----------GIEELKEYL 93 (225)
T ss_dssp TTCT----------THHHHHHHH
T ss_pred ccch----------hHhhHHHHh
Confidence 9998 887777766
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.0022 Score=68.37 Aligned_cols=129 Identities=22% Similarity=0.272 Sum_probs=66.7
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCccccccccc----ceecchhhhhcccceeEeeeeEEEEe--------------
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNIN----ARIMDSNEIEKERGITIFSKNCSIEY-------------- 982 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~----~~~~D~~~~E~erGiTi~~~~~~~~~-------------- 982 (1527)
+++-..|.|..|||||||+++|+.+... .+-.-+. +.-.|........-..+......+..
T Consensus 2 ~iPv~iitGFLGaGKTTll~~lL~~~~~-~riaVI~Ne~g~~~iD~~~~~~~~~~~~el~~gcicc~~~~~~~~~l~~~~ 80 (222)
T d1nija1 2 PIAVTLLTGFLGAGKTTLLRHILNEQHG-YKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 80 (222)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSCCC-CCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCHHHHHHHHHhcCCC-CcEEEEEecccchhhhhhhhcccccceEEecCCcceeccchhHHHHHHHHH
Confidence 4667889999999999999999976311 0100000 00111111111111111111111111
Q ss_pred -------cCeEEEEEeCCCCCCchHHHHHH--------HHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEecc
Q psy1758 983 -------NGTRINIIDTPGHADFGGEVERI--------LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKI 1047 (1527)
Q Consensus 983 -------~~~~iniiDTPGh~df~~ev~~~--------l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKi 1047 (1527)
......+|-|.|..+...-+... ....|+++.|||+..+....... -....+...--++++||+
T Consensus 81 ~~~~~~~~~~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~-~~~~~Qi~~AD~ivlNK~ 159 (222)
T d1nija1 81 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQF-TIAQSQVGYADRILLTKT 159 (222)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHC-HHHHHHHHTCSEEEEECT
T ss_pred HHHhhccCCcceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhh-HHHHHHHHhCCccccccc
Confidence 01345889999988755433221 22468999999998753211110 011112223448999999
Q ss_pred CCCC
Q psy1758 1048 DRSN 1051 (1527)
Q Consensus 1048 D~~~ 1051 (1527)
|+..
T Consensus 160 Dl~~ 163 (222)
T d1nija1 160 DVAG 163 (222)
T ss_dssp TTCS
T ss_pred cccc
Confidence 9965
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.47 E-value=0.0056 Score=64.17 Aligned_cols=66 Identities=21% Similarity=0.242 Sum_probs=38.6
Q ss_pred CeEEEEEeCCCh----hhHHHHHHh---h-----ccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccCCc
Q psy1758 115 HGSITFLDTPGH----EAFTAMRAR---G-----AKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDKLD 182 (1527)
Q Consensus 115 ~~~i~~iDTPG~----e~f~~~~~~---~-----~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl~~ 182 (1527)
+..+.|+||||. ......... . ....+-.+||+|+..+. ....+........++. =++++|.|-..
T Consensus 88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~-~~~~~~~~~~~~~~~~-~lI~TKlDet~ 165 (207)
T d1okkd2 88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ-NGLEQAKKFHEAVGLT-GVIVTKLDGTA 165 (207)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT-HHHHHHHHHHHHHCCS-EEEEECTTSSC
T ss_pred CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCc-hHHHHHHHhhhccCCc-eEEEeccCCCC
Confidence 346899999992 111111111 1 12457899999999864 3333334444444444 55789999643
|
| >d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.44 E-value=0.0055 Score=55.90 Aligned_cols=87 Identities=18% Similarity=0.267 Sum_probs=71.3
Q ss_pred CCCceeEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEee--------cCceeEeeeeecCC
Q psy1758 1119 NNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFK--------GLDRVLVNEALSGD 1190 (1527)
Q Consensus 1119 ~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~--------g~~~~~v~~a~AGd 1190 (1527)
++|.++.|....-+...|.++..-|++|+|+.||.+.+... .| ....+|..|+... ..+...+++|.|-.
T Consensus 2 d~~a~G~VlEs~~dkg~G~~atviv~~GtLk~GD~iv~g~~-~G-~i~~~iraLl~p~pl~emr~~~~~~~~vke~~aa~ 79 (101)
T d1g7sa1 2 DSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTS-KD-VISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAA 79 (101)
T ss_dssp TSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBS-SS-EEEEECCEEEEECCCC----CCCSEEECSEEESSE
T ss_pred CCCcEEEEEEEEEcCCCCeeEEEEEEcCEEccCCEEEEecC-cC-CEEEEeecccCCcchhhhhccccCCeECcEEeCCC
Confidence 67889999999999999999999999999999999998766 45 3456788887643 33567899999988
Q ss_pred EEEEe--cceecccCCeee
Q psy1758 1191 IVLIT--GIEEICIGSTIC 1207 (1527)
Q Consensus 1191 Ivai~--gl~~~~iGdTi~ 1207 (1527)
=|-|. |++++-.||.|.
T Consensus 80 gVkI~a~gLe~v~aG~~~~ 98 (101)
T d1g7sa1 80 GIKIVAPGIDDVMAGSPLR 98 (101)
T ss_dssp EEEEECSSCTTBCTTCEEE
T ss_pred ceEEEcCCCCcCCCCCEEE
Confidence 77665 888887898874
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.34 E-value=0.0017 Score=68.29 Aligned_cols=87 Identities=22% Similarity=0.318 Sum_probs=50.1
Q ss_pred cCeEEEEEeCCCCCCchHHHHH----H--HHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccCCCCCChhh
Q psy1758 983 NGTRINIIDTPGHADFGGEVER----I--LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEW 1056 (1527)
Q Consensus 983 ~~~~iniiDTPGh~df~~ev~~----~--l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD~~~a~~~~ 1056 (1527)
.++.+.||||||...+..+... . ....|-++||+|+..|-.. ...........++. =++++|+|-. ++.-.
T Consensus 91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~-~~~~~~f~~~~~~~-~~I~TKlDe~-~~~G~ 167 (207)
T d1ls1a2 91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEA-LSVARAFDEKVGVT-GLVLTKLDGD-ARGGA 167 (207)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHH-HHHHHHHHHHTCCC-EEEEECGGGC-SSCHH
T ss_pred ccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhH-HHHHHHHHhhCCCC-eeEEeecCcc-ccchH
Confidence 4678999999995544333322 2 2445899999999876222 12222233334543 3678999964 33443
Q ss_pred hHHHHHHHHhhhcccccccCCcEEEec
Q psy1758 1057 VVDATFDLFDKLCATEEQLDFPVIYTS 1083 (1527)
Q Consensus 1057 v~~~~~~~~~~l~~~~~~~~~pvi~~S 1083 (1527)
.++-... ...|+.|++
T Consensus 168 ~l~~~~~-----------~~~Pi~~i~ 183 (207)
T d1ls1a2 168 ALSARHV-----------TGKPIYFAG 183 (207)
T ss_dssp HHHHHHH-----------HCCCEEEEC
T ss_pred HHHHHHH-----------HCCCEEEEe
Confidence 3333221 245787775
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.27 E-value=0.0016 Score=69.23 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=57.3
Q ss_pred HhcCEEEEEEeCCCCCC--hhHHHHHHHHHHcCCccEEEEeccCCCCCC-hhhhHHHHHHHHhhhcccccccCCcEEEec
Q psy1758 1007 SMVDNVLLLIDAVEGPM--PQTRFVTRKALKLGFKPIVVVNKIDRSNAR-PEWVVDATFDLFDKLCATEEQLDFPVIYTS 1083 (1527)
Q Consensus 1007 ~~aD~ailVVDa~~G~~--~qt~~~~~~~~~~glp~IvviNKiD~~~a~-~~~v~~~~~~~~~~l~~~~~~~~~pvi~~S 1083 (1527)
++.|.+++|+++.++.. ..-...+-.|...|++++||+||+|+.+.. .+..++.+.+.+.. +.+|++.+|
T Consensus 9 ANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~-------~g~~v~~~S 81 (231)
T d1t9ha2 9 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN-------IGYDVYLTS 81 (231)
T ss_dssp ECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH-------HTCCEEECC
T ss_pred cccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHhh-------ccccceeee
Confidence 57899999999976432 233456667788999999999999997532 22223333333322 356899999
Q ss_pred cccCCcCCCcccccCCChhHHHHH
Q psy1758 1084 ALHGYANENSKARQGNMIPLFEAI 1107 (1527)
Q Consensus 1084 A~~g~~~~~~~~~~~gi~~Ll~~i 1107 (1527)
|+++. |+++|.+.+
T Consensus 82 a~~~~----------gl~~L~~~l 95 (231)
T d1t9ha2 82 SKDQD----------SLADIIPHF 95 (231)
T ss_dssp HHHHT----------TCTTTGGGG
T ss_pred cCChh----------HHHHHHHhh
Confidence 99997 676665443
|
| >d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.19 E-value=0.011 Score=56.98 Aligned_cols=90 Identities=22% Similarity=0.339 Sum_probs=62.4
Q ss_pred CCceEEEEEeec-CCCceEEEEEeeccEEEeccEEEe--cceeeeEeEeeccCCceeeecCCCcceEe--cCCC--CCCC
Q psy1758 242 PAKGVIIESRLD-KGKGPVATVLIQSGTLRCSDIVVA--GASYGRIRSMLNENGKNILEAGPSIPVEI--QGLT--KVPF 314 (1527)
Q Consensus 242 p~~~~v~~~~~~-~~~G~v~~~~v~~G~l~~gd~vv~--g~~~~kVr~i~~~~g~~v~~a~~~~~v~I--~gl~--~~~~ 314 (1527)
|....++..+.= .....|+.+.|.+|+|++|+.|.. +...++|++|.. +++++.+|.+|+.|+| .|.. +-..
T Consensus 4 P~~~~il~~~vFr~~~p~ivgv~V~sG~ik~G~~l~~~p~~~~g~VksIq~-~~~~v~~A~~G~~Vai~I~g~~~gr~i~ 82 (128)
T d1g7sa2 4 PASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMNDDGETVGTVESMQD-KGENLKSASRGQKVAMAIKDAVYGKTIH 82 (128)
T ss_dssp CEEEEEEEEEEEECSSSEEEEEEEEEEEEETTCEEECTTSCEEEEEEEEEE-TTEEESEEETTCCEEEEEETCCBTTTBC
T ss_pred eEEEEEcCCcEecCCCCeEEEEEEeeeeecCCCEEEECCCCceEEEEEEEE-CCccccEEcCCCEEEEEEcCcccCCCCC
Confidence 444444432222 223456666999999999999987 456799999965 5678888888876655 4543 2347
Q ss_pred CCCeEEEeCChhHHHHHH
Q psy1758 315 SGEELFVILNEKKAREIG 332 (1527)
Q Consensus 315 ~G~~~~~~~~e~~a~~~~ 332 (1527)
.||.+++--+++.++.+.
T Consensus 83 ~gD~L~s~i~~~~i~~lk 100 (128)
T d1g7sa2 83 EGDTLYVDIPENHYHILK 100 (128)
T ss_dssp TTCEEEECCCHHHHHTTT
T ss_pred CCCEEEEeCCHHHHHHHH
Confidence 999999887877666543
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.18 E-value=0.0017 Score=69.08 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=69.3
Q ss_pred ccccCEEEEEEeCCCC-CcHH-HHHHHHHHHHcCCCEEEEEEcccCCcchh-HHHHHHHhhhcccccccCCCCcEEEeec
Q psy1758 137 AKVTDIVVLVVAADDG-VMPQ-TREAIAHAKISGVPLIVAINKIDKLDINL-DRIKQDLISEQVIPEEYGGASPFISISA 213 (1527)
Q Consensus 137 ~~~aD~~IlVvda~~g-~~~q-t~e~i~~~~~~~vpiIvviNKiDl~~~~~-~~~~~~l~~~~~~~~~~~~~~~v~~iSA 213 (1527)
..+.|.+++|+++.+. .... ....+..+...+++.+||+||+||.+... ......+... ...+ .++++.+||
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~---y~~~--g~~v~~~Sa 82 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAED---YRNI--GYDVYLTSS 82 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHH---HHHH--TCCEEECCH
T ss_pred ccccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHH---Hhhc--cccceeeec
Confidence 4678999999999763 3333 33455667788999999999999976322 1111211111 1112 258999999
Q ss_pred cCCCChhHHHHHHHHHHHHHhhcCCCCCCCceEEEEEeecCCCceEEEEEeeccEEEecc
Q psy1758 214 KTGVGINKLLENISLQAEILELKAPVTTPAKGVIIESRLDKGKGPVATVLIQSGTLRCSD 273 (1527)
Q Consensus 214 ktg~gI~eL~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~G~v~~~~v~~G~l~~gd 273 (1527)
+++.|+++|.+.+. ....++-....-|+.++.+.++-+-.++.|+
T Consensus 83 ~~~~gl~~L~~~l~---------------~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~ 127 (231)
T d1t9ha2 83 KDQDSLADIIPHFQ---------------DKTTVFAGQSGVGKSSLLNAISPELGLRTNE 127 (231)
T ss_dssp HHHTTCTTTGGGGT---------------TSEEEEEESHHHHHHHHHHHHCC--------
T ss_pred CChhHHHHHHHhhc---------------cceEEEECCCCccHHHHHHhhccHhHhhhcc
Confidence 99999999887662 1223444555555556655554443444443
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.87 E-value=0.0055 Score=65.14 Aligned_cols=67 Identities=19% Similarity=0.181 Sum_probs=54.8
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccE-EEEeccCCCCC
Q psy1758 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI-VVVNKIDRSNA 1052 (1527)
Q Consensus 984 ~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~I-vviNKiD~~~a 1052 (1527)
.+.+.++|||+.. ...+..++..+|.+++++.+......++...+..+.+.++|.+ +++||.|..+.
T Consensus 111 ~~d~IiiD~~~~~--~~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~giv~N~~~~~~~ 178 (237)
T d1g3qa_ 111 KFDFILIDCPAGL--QLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDR 178 (237)
T ss_dssp GCSEEEEECCSSS--SHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTT
T ss_pred cCCEEEEcccccc--cccchhhhhhhhcccccccccceecchhhHHHHHHhhhhhhhhhhhhcccccccc
Confidence 5789999999864 4567778999999999999875555677888888888999987 78999987543
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.83 E-value=0.019 Score=60.09 Aligned_cols=65 Identities=22% Similarity=0.223 Sum_probs=37.3
Q ss_pred CeEEEEEeCCCh--h--hHHHHHH--hhccccCEEEEEEeCCCCCcHHHHHHHHHH-HHcCCCEEEEEEcccCCc
Q psy1758 115 HGSITFLDTPGH--E--AFTAMRA--RGAKVTDIVVLVVAADDGVMPQTREAIAHA-KISGVPLIVAINKIDKLD 182 (1527)
Q Consensus 115 ~~~i~~iDTPG~--e--~f~~~~~--~~~~~aD~~IlVvda~~g~~~qt~e~i~~~-~~~~vpiIvviNKiDl~~ 182 (1527)
+..+.||||||. . ....... ......|-+++|+|+..+- ......... ...++ -=++++|.|-..
T Consensus 92 ~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~--~~~~~~~~f~~~~~~-~~~I~TKlDe~~ 163 (207)
T d1ls1a2 92 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAFDEKVGV-TGLVLTKLDGDA 163 (207)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH--HHHHHHHHHHHHTCC-CEEEEECGGGCS
T ss_pred cCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccch--hHHHHHHHHHhhCCC-CeeEEeecCccc
Confidence 346899999992 1 1111111 2234568999999998752 223333222 22333 347789999643
|
| >d1kska4 d.265.1.3 (A:60-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase RsuA/RluD domain: Ribosomal small subunit pseudouridine 516 synthase RsuA species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.00077 Score=69.04 Aligned_cols=141 Identities=22% Similarity=0.280 Sum_probs=81.8
Q ss_pred EEEEeCCCCCCHH-------HHHHHHHHHhccccccccCCCCCCCeEEEEEEecccccccccc----cCCCcEEEEEEEE
Q psy1758 665 VLLLDKPYGLSSN-------NALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYL----SEADKYYEAIIHL 733 (1527)
Q Consensus 665 ~~~v~Kp~g~ts~-------~~~~~~~~~~~~~kvgh~gtLdp~a~Gvl~~~~g~~tk~~~~~----~~~~K~Y~~~~~~ 733 (1527)
.+++|||+|+-|+ .+...+... ...++-..|.||..+||+|++.-. .++++.| ....|+|.+++.
T Consensus 3 yi~lNKP~G~l~s~~~~~~~~~~~~l~~~-~~~~l~~vgRLD~~tsGLlL~tnd--g~~~~~l~~~~~~i~k~Y~v~v~- 78 (172)
T d1kska4 3 YFMLNKPQGYVCSTDDPDHPTVLYFLDEP-VAWKLHAAGRLDIDTTGLVLMTDD--GQWSHRITSPRHHCEKTYLVTLE- 78 (172)
T ss_dssp EEEEEECTTCBSSSSCSSSCBGGGGCCCT-TGGGCEESSCCCTTCEEEEEEESC--HHHHHHHHCTTSCCCEEEEEEES-
T ss_pred EEEEECCCCEEECCcCCCCCcEEEecCcc-ccCcEEEeecCCccccccEEEecc--cceeeeeccccccccEEEEEEEe-
Confidence 4789999999542 111112111 124688999999999999999653 2344444 367899999873
Q ss_pred CccccCCCCcccEEeecCCCCCCHHHHHHHHHhccccccccCccccccccCChhhHHHHhcCCcccccceeEEEEEEEEE
Q psy1758 734 GITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITII 813 (1527)
Q Consensus 734 G~~tdt~d~~g~v~~~~~~~~~~~~~~~~~l~~~~g~~~q~pp~~Sa~k~~g~~~y~~ar~g~~~~~~~r~~~i~~~~~~ 813 (1527)
| +++.+++++.-. .+.++|+. .......+..
T Consensus 79 ----------~---------~i~~~~~~~l~~--------------gv~i~~~~------------~~~~~~~v~~---- 109 (172)
T d1kska4 79 ----------S---------PVADDTAEQFAK--------------GVQLHNEK------------DLTKPAVLEV---- 109 (172)
T ss_dssp ----------S---------CCCTTHHHHHHH--------------CCCCTTCS------------SCCCCCEEEE----
T ss_pred ----------c---------cCCHHHHHHhhc--------------ceEEcCcc------------ccccceEEee----
Confidence 2 245555543222 11222211 0111122211
Q ss_pred EEeCCeEEEEEEecccc--cHHHHHHHHHHHhCChhhhHHHhhcccCccccccccC
Q psy1758 814 DYTIPYLTLRIHCSKGT--YIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKCLN 867 (1527)
Q Consensus 814 ~~~~~~~~~~v~cs~gt--Yirsl~~dig~~l~~~a~~~~LrR~~~g~f~~~~a~~ 867 (1527)
.... .+++.-..|. -||.++..+|. .+..|.|+++|+|+|+..+.
T Consensus 110 -~~~~--~l~i~l~~Gr~~qIR~~~~~lg~------~V~~L~Rv~~G~~~L~~~L~ 156 (172)
T d1kska4 110 -ITPT--QVRLTISEGRYHQVKRMFAAVGN------HVVELHRERIGGITLDADLA 156 (172)
T ss_dssp -EETT--EEEEEESCCCTTHHHHHHHHTTC------CEEEEEEEEETTEECCTTCC
T ss_pred -ccCc--EEEEEEecCccHHHHHHHHHcCC------EEeEEEEEEEccEecCCCCC
Confidence 1122 3566667776 48888877654 45689999999998854343
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.55 E-value=0.011 Score=62.60 Aligned_cols=142 Identities=15% Similarity=0.174 Sum_probs=74.3
Q ss_pred CEEEEEecCCCChhHHHHHHHccc------cccccCCceeEEEEEE------EEEeCC----------------------
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTN------VVFSEAGGITQHIGAY------NVVTNH---------------------- 115 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~------~~~~~~~giT~~~~~~------~~~~~~---------------------- 115 (1527)
|...|.|--|+|||||++++.... +..++.+.+..|-... .....+
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~~~~~riaVI~Ne~g~~~iD~~~~~~~~~~~~el~~gcicc~~~~~~~~~l~~~~~~~ 83 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 83 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEeeCCCCCHHHHHHHHHhcCCCCcEEEEEecccchhhhhhhhcccccceEEecCCcceeccchhHHHHHHHHHHHH
Confidence 678899999999999999986542 1334444333332211 111111
Q ss_pred ------eEEEEEeCCChhhHHHHHH--------hhccccCEEEEEEeCCCCCcHHHH-H-HHHHHHHcCCCEEEEEEccc
Q psy1758 116 ------GSITFLDTPGHEAFTAMRA--------RGAKVTDIVVLVVAADDGVMPQTR-E-AIAHAKISGVPLIVAINKID 179 (1527)
Q Consensus 116 ------~~i~~iDTPG~e~f~~~~~--------~~~~~aD~~IlVvda~~g~~~qt~-e-~i~~~~~~~vpiIvviNKiD 179 (1527)
....++-|.|-........ ......|.+|.|+|+..+...... . ...++. ..=++++||+|
T Consensus 84 ~~~~~~~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~---~AD~ivlNK~D 160 (222)
T d1nija1 84 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG---YADRILLTKTD 160 (222)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHH---TCSEEEEECTT
T ss_pred hhccCCcceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHH---hCCcccccccc
Confidence 1246777777433322221 112235889999999874321111 1 112222 23368899999
Q ss_pred CCcchhHHHHHHHhhhcccccccCCCCcEEEeeccCCCChhHHH
Q psy1758 180 KLDINLDRIKQDLISEQVIPEEYGGASPFISISAKTGVGINKLL 223 (1527)
Q Consensus 180 l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iSAktg~gI~eL~ 223 (1527)
+.+. .++....+.. ....++++++| .-...++.|+
T Consensus 161 l~~~-~~~~~~~l~~-------lNP~a~Ii~~~-~g~v~~~~ll 195 (222)
T d1nija1 161 VAGE-AEKLHERLAR-------INARAPVYTVT-HGDIDLGLLF 195 (222)
T ss_dssp TCSC-THHHHHHHHH-------HCSSSCEEECC-SSCCCGGGGS
T ss_pred cccH-HHHHHHHHHH-------HhCCCeEEEee-CCccCHHHhh
Confidence 9763 3333333322 23345677644 2234555554
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.48 E-value=0.00084 Score=70.37 Aligned_cols=111 Identities=9% Similarity=-0.028 Sum_probs=59.0
Q ss_pred CCEEEEEecCCCChhHHHHHHHccccccccC-CceeEEEEEEEEEeCCeEEEEEeCCChhhHH-----------HHHHhh
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKTNVVFSEA-GGITQHIGAYNVVTNHGSITFLDTPGHEAFT-----------AMRARG 136 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~-~giT~~~~~~~~~~~~~~i~~iDTPG~e~f~-----------~~~~~~ 136 (1527)
|..|+++|.||+|||||.++|...-...... ...+.|..-... .......-.+.++.+... ......
T Consensus 2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (213)
T d1bifa1 2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDM-VKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF 80 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-HCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhh-ccccccccccccccccchhhHHHHHHHHHHHHHHH
Confidence 3468899999999999999997532211110 001110000000 000000001122211111 111122
Q ss_pred ccccCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccC
Q psy1758 137 AKVTDIVVLVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK 180 (1527)
Q Consensus 137 ~~~aD~~IlVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl 180 (1527)
+...++.++++|++.....+-......+...+.+++++.++++.
T Consensus 81 ~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 124 (213)
T d1bifa1 81 LSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVD 124 (213)
T ss_dssp HHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCC
T ss_pred HHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccH
Confidence 33456677889999877666666667777888889999898874
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.01 E-value=0.004 Score=64.92 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=32.2
Q ss_pred HHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEEeccC
Q psy1758 1006 LSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKID 1048 (1527)
Q Consensus 1006 l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~IvviNKiD 1048 (1527)
+...++.++++|+..+...+-......+...+.+.+++.++++
T Consensus 81 ~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 123 (213)
T d1bifa1 81 LSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICV 123 (213)
T ss_dssp HHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred HHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeecc
Confidence 3445677889999876666656666778888888888877775
|
| >d1v9fa_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase D, RluD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase RsuA/RluD domain: Ribosomal large subunit pseudouridine synthase D, RluD species: Escherichia coli [TaxId: 562]
Probab=94.77 E-value=0.0085 Score=64.80 Aligned_cols=70 Identities=23% Similarity=0.365 Sum_probs=54.8
Q ss_pred eeEEEEeCCCCCCHH--------HHHHHHHHHhc----cccccccCCCCCCCeEEEEEEeccc--cccccccc--CCCcE
Q psy1758 663 HGVLLLDKPYGLSSN--------NALKKIKYLLN----AKKVGYTGTLDPFATGLLPLCFGEA--TKFSNYLS--EADKY 726 (1527)
Q Consensus 663 ~G~~~v~Kp~g~ts~--------~~~~~~~~~~~----~~kvgh~gtLdp~a~Gvl~~~~g~~--tk~~~~~~--~~~K~ 726 (1527)
+.+++||||+|+.+| .+++.++..+. ..+++....||...||||++|-++. ..+...+. .-.|+
T Consensus 15 ~~~ivvnKP~gl~~hp~~~~~~~t~~~~l~~~~~~~~~~~~~~~vHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~v~K~ 94 (250)
T d1v9fa_ 15 EDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITRE 94 (250)
T ss_dssp SSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBCCCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEE
T ss_pred CCEEEEECCCCCCCcCCCCCCCccHHHHHHHHhhhccCCCceeEEeecCCCCcceEEEecccHHHHhhhhhhccceEeEE
Confidence 569999999999886 46777777664 3478899999999999999998874 33555554 55899
Q ss_pred EEEEEE
Q psy1758 727 YEAIIH 732 (1527)
Q Consensus 727 Y~~~~~ 732 (1527)
|.+...
T Consensus 95 Y~a~~~ 100 (250)
T d1v9fa_ 95 YEAVAI 100 (250)
T ss_dssp EEEEEE
T ss_pred eeeeec
Confidence 998764
|
| >d1v9ka_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase C, RluC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pseudouridine synthase superfamily: Pseudouridine synthase family: Pseudouridine synthase RsuA/RluD domain: Ribosomal large subunit pseudouridine synthase C, RluC species: Escherichia coli [TaxId: 562]
Probab=94.45 E-value=0.01 Score=63.17 Aligned_cols=70 Identities=21% Similarity=0.347 Sum_probs=54.1
Q ss_pred eeEEEEeCCCCCCHH-------HHHHHHHHHhc-cccccccCCCCCCCeEEEEEEecccc--ccccccc--CCCcEEEEE
Q psy1758 663 HGVLLLDKPYGLSSN-------NALKKIKYLLN-AKKVGYTGTLDPFATGLLPLCFGEAT--KFSNYLS--EADKYYEAI 730 (1527)
Q Consensus 663 ~G~~~v~Kp~g~ts~-------~~~~~~~~~~~-~~kvgh~gtLdp~a~Gvl~~~~g~~t--k~~~~~~--~~~K~Y~~~ 730 (1527)
+.+++||||+|+.+| .++..++.... ...++-...||-..||||++|-+..+ .|.+.+. ...|+|.+.
T Consensus 8 ~~ilvvnKP~gl~~h~~~~~~~~~~~~l~~~~~~~~~~~~vHRLD~~TSGlll~Ak~~~~~~~l~~~f~~~~v~K~Y~a~ 87 (227)
T d1v9ka_ 8 DHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 87 (227)
T ss_dssp SSEEEEEECTTSCSSCCSSSBCCHHHHHHHHSTTCSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCEEEEECCCCCccCCCCCCcchHHHHHHHhCCCCcccceeeeccceeeeeeeeecchHHHHHHHHHHhcccccceeccc
Confidence 458999999999875 67888876654 35677889999999999999987742 3444443 568999987
Q ss_pred EE
Q psy1758 731 IH 732 (1527)
Q Consensus 731 ~~ 732 (1527)
..
T Consensus 88 ~~ 89 (227)
T d1v9ka_ 88 VR 89 (227)
T ss_dssp EE
T ss_pred cc
Confidence 65
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.43 E-value=0.023 Score=59.98 Aligned_cols=64 Identities=23% Similarity=0.333 Sum_probs=47.0
Q ss_pred CeEEEEEeCCCCCCchHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccE-EEEeccCC
Q psy1758 984 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPI-VVVNKIDR 1049 (1527)
Q Consensus 984 ~~~iniiDTPGh~df~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~I-vviNKiD~ 1049 (1527)
.+.+.|+|||+... ......+..+|.+++|+++...-..+....+..+.+.+.+.+ +++||.+.
T Consensus 109 ~~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~N~~~~ 173 (232)
T d1hyqa_ 109 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITT 173 (232)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECT
T ss_pred ccceeeeccccccc--chhHHHhhhhheeeeeccccccchhhhhhhhhhhhhccccccccccccccc
Confidence 56789999999764 455667889999999998754223344455666777888875 67899874
|
| >d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Reductase/isomerase/elongation factor common domain superfamily: Translation proteins family: Elongation factors domain: Initiation factor IF2/eIF5b, domains 2 and 4 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.16 E-value=0.032 Score=50.75 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=62.0
Q ss_pred eEEEeeeccccCceEEEEEeecCccccCCEEEEecCCCCCcCcceeeeEEEeecCceeEeeeeecCCEEEEe--cceecc
Q psy1758 1124 LQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLIT--GIEEIC 1201 (1527)
Q Consensus 1124 ~~V~~~~~d~~~G~v~~grV~sG~lk~Gd~v~~~~~~~g~~~~~kV~~i~~~~g~~~~~v~~a~AGdIvai~--gl~~~~ 1201 (1527)
+.|-.++.....|.++-++|.+|.++.+..+.+++. +......+|.+|..+ ..+++++.+|.=|.|. +..++.
T Consensus 9 A~V~~vF~~~k~~~iAGc~V~~G~i~~~~~vrv~R~-~~~I~~G~i~sLk~~----K~~V~eV~~G~ECGi~l~~~~d~~ 83 (99)
T d1d1na_ 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQ-GIVVYEGEIDSLKRY----KDDVREVAQGYECGLTIKNFNDIK 83 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECS-SSEEEEEECSEEECS----SSCCSCCBTTCEEEEECTTCSSCS
T ss_pred EEEEEEEEcCCCcEEEEEEEEeCeEccCCceEEecC-CEEEEEeEEeeeccc----ccccCEecCCeEEEEEecCccCCC
Confidence 445555555667899999999999999999999987 222345688887655 3589999999999774 556889
Q ss_pred cCCeeeC
Q psy1758 1202 IGSTICD 1208 (1527)
Q Consensus 1202 iGdTi~~ 1208 (1527)
.||+|-.
T Consensus 84 ~GD~ie~ 90 (99)
T d1d1na_ 84 EGDVIEA 90 (99)
T ss_dssp SCSEEEE
T ss_pred CCCEEEE
Confidence 9999943
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=93.30 E-value=0.018 Score=57.24 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.5
Q ss_pred CEEEEEecCCCChhHHHHHHHc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRK 91 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~ 91 (1527)
|.++|+|.+|+|||||+++|..
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999999975
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.89 E-value=0.074 Score=57.97 Aligned_cols=56 Identities=25% Similarity=0.324 Sum_probs=37.1
Q ss_pred CEEEEEecCCCChhHHHHHHHcccccc--cc-CCceeEEEEEEEEEe---CCeEEEEEeCCC
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTNVVF--SE-AGGITQHIGAYNVVT---NHGSITFLDTPG 125 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~~~~--~~-~~giT~~~~~~~~~~---~~~~i~~iDTPG 125 (1527)
..|+|+|+..+|||+|+|.|.+..... +. ....|..+..+.... .+..+.++||.|
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG 94 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEG 94 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccc
Confidence 478999999999999999998776422 21 112333333333322 234788999999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.85 E-value=0.12 Score=51.88 Aligned_cols=92 Identities=17% Similarity=0.121 Sum_probs=55.4
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccccccccCCceeEEEEEEEEEeCCeEEEEEeCCC-hhhHHHHHHhhccccCEEE
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTNVVFSEAGGITQHIGAYNVVTNHGSITFLDTPG-HEAFTAMRARGAKVTDIVV 144 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~~~~~~~~giT~~~~~~~~~~~~~~i~~iDTPG-~e~f~~~~~~~~~~aD~~I 144 (1527)
.+++..|+++|.||+||||++..+..... . ..+.. |.-+ ...........+.. ..-
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~~~~-------~------~~i~~--------D~~~~~~~~~~~~~~~l~~--g~~ 67 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLVSAG-------Y------VHVNR--------DTLGSWQRCVSSCQAALRQ--GKR 67 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTGGGT-------C------EEEEH--------HHHCSHHHHHHHHHHHHHT--TCC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcC-------C------EEEch--------HHHHHHHHHHHHHHHHHHC--CCC
Confidence 45677899999999999999998854321 0 00111 1111 12222233333322 234
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEEcccC
Q psy1758 145 LVVAADDGVMPQTREAIAHAKISGVPLIVAINKIDK 180 (1527)
Q Consensus 145 lVvda~~g~~~qt~e~i~~~~~~~vpiIvviNKiDl 180 (1527)
+|+|.+.....+-...+..++..+.++.++.-.+|+
T Consensus 68 vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~ 103 (172)
T d1yj5a2 68 VVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATI 103 (172)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCH
T ss_pred ceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCCH
Confidence 667988866666666777788889997776655553
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=92.41 E-value=0.016 Score=57.63 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=21.4
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhc
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQ 945 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~ 945 (1527)
++.|+|+|++|+|||||+++|+..
T Consensus 2 ~Pvi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 2 IPLLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999854
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.12 E-value=0.017 Score=58.17 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.0
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccC
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSG 947 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g 947 (1527)
.++|+|+|.+|+|||||+.+|....+
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 47999999999999999999987643
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=92.12 E-value=0.036 Score=55.23 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=23.8
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHcc
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
.+++.+|+|.|++|+||||+.+.|...
T Consensus 2 ~pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 2 QPKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 367789999999999999999999764
|
| >d1vi7a2 d.58.11.2 (A:138-208) Hypothetical protein YigZ, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: YigZ C-terminal domain-like domain: Hypothetical protein YigZ, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.06 E-value=0.096 Score=44.55 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=61.1
Q ss_pred eeEEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEEEE
Q psy1758 1318 PYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLIS 1385 (1527)
Q Consensus 1318 P~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~~~ 1385 (1527)
|..++++.++=...|.|-..|.+..+++.+.++. ..+.+...+|..+.-.|...|..+|+|...+.
T Consensus 1 P~t~~~l~~dY~~~~~v~~~L~~~~~~i~~~~y~--~~V~l~v~vp~~~~~~f~~~l~d~t~G~v~~~ 66 (71)
T d1vi7a2 1 PLTEYTLQCEYHQLTGIEALLGQCDGKIINSDYQ--AFVLLRVALPAAKVAEFSAKLADFSRGSLQLL 66 (71)
T ss_dssp CCEEEEEEECTTTHHHHHHHHHHTTCEEEEEEES--SSEEEEEEECSSTHHHHHHHHHHHHTTCCCCE
T ss_pred CceEEEEEeccccHHHHHHHHHHCCCEEEeeeec--cEEEEEEEECHHHHHHHHHHHHHhCCCcEEEE
Confidence 7889999999999999999999999999999994 46999999999999999999999999987543
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=91.57 E-value=0.034 Score=55.23 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.0
Q ss_pred CCEEEEEecCCCChhHHHHHHHcc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
-|+|+|+|.||+||||++++|...
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999999999653
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=91.23 E-value=0.045 Score=54.91 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.0
Q ss_pred EEEEEecCCCChhHHHHHHHcc
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
+|+|+|++|+|||||++.+.+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHhc
Confidence 6999999999999999998763
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.03 E-value=0.053 Score=55.51 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRK 91 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~ 91 (1527)
.+|+.|+|+|+||+||||++..|..
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4677899999999999999999976
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.95 E-value=0.04 Score=55.20 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.9
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
...+|+|.|.+|+|||||+++|...
T Consensus 6 ~~K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 6 FAKTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999999764
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.76 E-value=0.057 Score=54.52 Aligned_cols=85 Identities=14% Similarity=0.144 Sum_probs=52.1
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCchHH
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGE 1001 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~~e 1001 (1527)
..-|.++|.+|+||||++.+|+...+... ++.+.... .......
T Consensus 14 p~liil~G~pGsGKST~a~~l~~~~~~~~---------i~~D~~~~---------------------------~~~~~~~ 57 (172)
T d1yj5a2 14 PEVVVAVGFPGAGKSTFIQEHLVSAGYVH---------VNRDTLGS---------------------------WQRCVSS 57 (172)
T ss_dssp CCEEEEECCTTSSHHHHHHHHTGGGTCEE---------EEHHHHCS---------------------------HHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCCEE---------EchHHHHH---------------------------HHHHHHH
Confidence 34689999999999999999975532211 11111100 0012233
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCccEEEE
Q psy1758 1002 VERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVV 1044 (1527)
Q Consensus 1002 v~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~~glp~Ivvi 1044 (1527)
+..++. .+..+|+|++.....+-...+..|...|.++.++.
T Consensus 58 ~~~~l~--~g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~ 98 (172)
T d1yj5a2 58 CQAALR--QGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFN 98 (172)
T ss_dssp HHHHHH--TTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHH--CCCCceeeCcCCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 333443 34557789987665666667788888999886665
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.52 E-value=0.079 Score=57.72 Aligned_cols=88 Identities=16% Similarity=0.253 Sum_probs=51.8
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccCcccccccccceecchhhhhcccceeEeeeeEEEEecCeEEEEEeCCCCCCch-
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFG- 999 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~iniiDTPGh~df~- 999 (1527)
++--|+|+|...+|||||+|.|++....+.-...+. ...+|+=+-.... ....+..+.++||.|..+-.
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~---------~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~~~~ 100 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQ---------SHTKGIWMWCVPH-PKKPGHILVLLDTEGLGDVEK 100 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSS---------CCCCSEEEEEEEC-SSSTTCEEEEEEECCBCCGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCC---------CCCCceEEEEeec-cCCCCceEEEEeccccccccc
Confidence 466899999999999999999987644333222111 1235654322111 11245689999999964421
Q ss_pred ----HHH---HHHHHhcCEEEEEEeC
Q psy1758 1000 ----GEV---ERILSMVDNVLLLIDA 1018 (1527)
Q Consensus 1000 ----~ev---~~~l~~aD~ailVVDa 1018 (1527)
.+. .-++..++..|+=+..
T Consensus 101 ~~~~~~~~i~~l~~llSs~~i~N~~~ 126 (277)
T d1f5na2 101 GDNQNDSWIFALAVLLSSTFVYNSIG 126 (277)
T ss_dssp CCCTTHHHHHHHHHHHCSEEEEEEES
T ss_pred ccchhHHHHHHHHHHHhCEEEEeccc
Confidence 111 1134557766665554
|
| >d1t95a3 d.58.11.3 (A:162-234) Hypothetical protein AF0491, C-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: EF-G C-terminal domain-like family: Hypothetical protein AF0491, C-terminal domain domain: Hypothetical protein AF0491, C-terminal domain species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=90.39 E-value=0.16 Score=43.01 Aligned_cols=63 Identities=17% Similarity=0.171 Sum_probs=51.5
Q ss_pred EEEEEEecCcchHHHHHHHhccCCeEeeeeecCCcEEEEEEEechhhhcChHHHHccccceeEE
Q psy1758 1320 ENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGL 1383 (1527)
Q Consensus 1320 ~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~l~~~vP~~~l~g~~~~l~s~T~G~g~ 1383 (1527)
.++.|.+|.+|.|++.+.|.+- |.+...+-.++|.....-++|..--..|.+.|.++|+|.+.
T Consensus 9 ~~lavkIP~~~~gka~~~l~~~-g~i~kEeW~~DGSw~~vveiPaG~q~e~~~~ln~~t~G~ae 71 (73)
T d1t95a3 9 MEIAIKIPPEHTGRAISALYNF-GGVTREEWQRDGSWICVMRIPSGMYGDLMDLLGKVAKGEAL 71 (73)
T ss_dssp EEEEEEECGGGHHHHHHHHHHH-CCEEEEEECTTSCEEEEEEEEGGGHHHHHHHHHHHHTTCCE
T ss_pred EEEEEEECHHHHHHHHHHHHHh-CcchhhcccCCCcEEEEEEecccchHHHHHHHhhhcCCcee
Confidence 4678899999999999999876 77777776666655666699987666799999999999864
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=89.86 E-value=0.08 Score=53.91 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=22.5
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRK 91 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~ 91 (1527)
+++.+|+++|+||+||||+...|..
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999875
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=89.38 E-value=0.079 Score=53.96 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.8
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
+|.+|+|+|++|+||||++..|...
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999988653
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=89.37 E-value=0.049 Score=54.61 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.5
Q ss_pred EEEEEeecCCCCCcHHhHHhhc
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQ 945 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~ 945 (1527)
+|+|+|++|+|||||+..++..
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHhc
Confidence 6999999999999999999865
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.20 E-value=0.1 Score=53.16 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=21.1
Q ss_pred CCEEEEEecCCCChhHHHHHHHc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRK 91 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~ 91 (1527)
|++|+|+|+||+||||+...|..
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999998876
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=88.12 E-value=0.053 Score=53.78 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=21.4
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhc
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQ 945 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~ 945 (1527)
..||+|+|++|+||||++..|...
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999765
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.82 E-value=0.069 Score=53.17 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.2
Q ss_pred eEEEEEeecCCCCCcHHhHHhhc
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQ 945 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~ 945 (1527)
+-|+|+|.+|+|||||+++|+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 35789999999999999999754
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.73 E-value=0.1 Score=51.86 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=20.2
Q ss_pred CEEEEEecCCCChhHHHHHHHcc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
|+|+++|.+|+||||+...|...
T Consensus 2 p~IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999988653
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.53 E-value=0.13 Score=51.13 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=18.7
Q ss_pred EEEEEecCCCChhHHHHHHHc
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRK 91 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~ 91 (1527)
.+.|+|.+|+|||||+++|..
T Consensus 3 ii~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 578999999999999998854
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=87.03 E-value=0.17 Score=51.68 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=23.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
.|..+|+|+|+||+||||+...|...
T Consensus 4 ~r~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 4 ARLLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHH
Confidence 47788999999999999999999763
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=86.79 E-value=0.15 Score=49.40 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=18.5
Q ss_pred EEEEEecCCCChhHHHHHHHc
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRK 91 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~ 91 (1527)
.|++.|.||+|||||++.|..
T Consensus 4 lIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999998854
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=86.66 E-value=0.16 Score=50.27 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=22.3
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
.++..|.++|.+|+||||+...|...
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46678999999999999999888653
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=86.55 E-value=0.14 Score=57.06 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=22.3
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQ 945 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~ 945 (1527)
..+||.|+|.+|+|||||+++|+..
T Consensus 165 ~~~nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 165 IGKNVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp HTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred hCCCEEEEeeccccchHHHHHHhhh
Confidence 3468999999999999999999865
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=86.42 E-value=0.15 Score=50.21 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.6
Q ss_pred EEEEEecCCCChhHHHHHHHcc
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
.|+|.|++|+||||++++|...
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999754
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.20 E-value=0.17 Score=51.04 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.1
Q ss_pred CCCEEEEEecCCCChhHHHHHHHc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRK 91 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~ 91 (1527)
.+..|+|-|++|+|||||+++|..
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999865
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.15 E-value=0.17 Score=51.58 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=21.6
Q ss_pred CCCEEEEEecCCCChhHHHHHHHc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRK 91 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~ 91 (1527)
+.+.|+|+|+||+||||+...|..
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999976
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=85.96 E-value=0.098 Score=51.88 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.5
Q ss_pred eeEEEEEeecCCCCCcHHhHHhhc
Q psy1758 922 LIKSAIIAHVDHGKTTLIDHLLRQ 945 (1527)
Q Consensus 922 irnIaIiGh~d~GKTTLv~~Ll~~ 945 (1527)
..||+|.|++|+||||+++.|...
T Consensus 5 ~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHH
Confidence 458999999999999999999765
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.84 E-value=0.17 Score=50.60 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.6
Q ss_pred EEEEEecCCCChhHHHHHHHcc
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
+|+|+|+||+||||+...|...
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999988663
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=85.58 E-value=0.16 Score=49.33 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=19.6
Q ss_pred EEEEEecCCCChhHHHHHHHcc
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
.|+++|++|+||||+...|...
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999764
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.30 E-value=0.21 Score=50.78 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.8
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHc
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRK 91 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~ 91 (1527)
..+++.|.|+|+||+||||+...|..
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34678899999999999999999966
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.11 E-value=0.25 Score=49.69 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=20.3
Q ss_pred CEEEEEecCCCChhHHHHHHHcc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
..|+|+|++|+|||||++.|...
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 46889999999999999999764
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.01 E-value=0.098 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=21.0
Q ss_pred eEEEEEeecCCCCCcHHhHHhhc
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQ 945 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~ 945 (1527)
|+|.|.|++|+|||||+.++...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 67999999999999999999854
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=84.97 E-value=0.11 Score=50.65 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.8
Q ss_pred eEEEEEeecCCCCCcHHhHHhhc
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQ 945 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~ 945 (1527)
++|.|+|++|+||||+...|...
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999765
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=84.85 E-value=0.11 Score=50.27 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.4
Q ss_pred EEEEEeecCCCCCcHHhHHhhc
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQ 945 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~ 945 (1527)
-|.|.|.+|+|||||+++|+..
T Consensus 4 lIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3788999999999999999754
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=84.57 E-value=0.25 Score=48.61 Aligned_cols=24 Identities=13% Similarity=0.405 Sum_probs=20.6
Q ss_pred CCEEEEEecCCCChhHHHHHHHcc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
...|.|.|.+|+||||+.+.|...
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356888899999999999999764
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.46 E-value=0.22 Score=50.00 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=19.9
Q ss_pred EEEEEecCCCChhHHHHHHHcc
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
+|+|+|+||+||||+...|...
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998754
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=84.37 E-value=0.22 Score=50.04 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.9
Q ss_pred EEEEEecCCCChhHHHHHHHcc
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
+|+|+|+||+||||+...|...
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988764
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=84.21 E-value=0.22 Score=52.76 Aligned_cols=28 Identities=21% Similarity=0.477 Sum_probs=23.8
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccc
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTN 93 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~ 93 (1527)
..++-+|+|+|++|+|||||++.+.+--
T Consensus 26 i~~Ge~vaIvG~sGsGKSTLl~ll~gl~ 53 (241)
T d2pmka1 26 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 53 (241)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3456789999999999999999998753
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=84.17 E-value=0.19 Score=51.73 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=23.0
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN 93 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~ 93 (1527)
.++-.++++|+.|+|||||++.+++-.
T Consensus 25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 25 EKGNVVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhccc
Confidence 455679999999999999999997743
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.16 E-value=0.16 Score=51.34 Aligned_cols=25 Identities=28% Similarity=0.201 Sum_probs=21.4
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQ 945 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~ 945 (1527)
...-|||.|++|||||||+++|...
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999999753
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=84.11 E-value=0.25 Score=49.03 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.6
Q ss_pred CEEEEEecCCCChhHHHHHHHc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRK 91 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~ 91 (1527)
..|+|.|.+|+||||+++.|..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.08 E-value=0.27 Score=51.70 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN 93 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~ 93 (1527)
.++=.++++|+.|+|||||++.+.+-.
T Consensus 24 ~~Gei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 24 HEGEFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 455689999999999999999997753
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=84.07 E-value=0.25 Score=51.96 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=23.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN 93 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~ 93 (1527)
.++=.++|+|++|+|||||++.+.+-.
T Consensus 29 ~~Ge~~~iiG~sGsGKSTLl~~i~gl~ 55 (230)
T d1l2ta_ 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (230)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCcchhhHhccCCC
Confidence 456689999999999999999887753
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=83.94 E-value=0.15 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.169 Sum_probs=20.5
Q ss_pred eEEEEEeecCCCCCcHHhHHhhc
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQ 945 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~ 945 (1527)
+-|.|.|++|+||||++.+|...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999865
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=83.92 E-value=0.28 Score=48.35 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=20.5
Q ss_pred CCEEEEEecCCCChhHHHHHHHcc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
+-.|++.|++|+||||+.+.|...
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345889999999999999999764
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=83.83 E-value=0.12 Score=51.25 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.0
Q ss_pred eEEEEEeecCCCCCcHHhHHhhcc
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQS 946 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~ 946 (1527)
+||+|+|++|+||||+...|...-
T Consensus 1 k~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999997653
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.70 E-value=0.96 Score=47.41 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=22.0
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
..+.+.+.|+||+||||++.++.+.
T Consensus 51 ~~~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 51 VFRAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999874
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.50 E-value=0.39 Score=48.94 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=20.9
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
+..+++++|+||+|||+++..|...
T Consensus 42 ~k~n~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCeEEEecCCcccHHHHHHHHHH
Confidence 3457999999999999999877653
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=83.49 E-value=0.26 Score=50.76 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.3
Q ss_pred CCEEEEEecCCCChhHHHHHHHcc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
.|.|+|.|+||+||||+...|...
T Consensus 3 ~piI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 3 APVITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999988763
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=83.47 E-value=0.15 Score=54.24 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=21.8
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQ 945 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~ 945 (1527)
..-.+||+|++|+|||||++.|++.
T Consensus 28 ~Ge~vaIvG~sGsGKSTLl~ll~gl 52 (241)
T d2pmka1 28 QGEVIGIVGRSGSGKSTLTKLIQRF 52 (241)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999999764
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=83.42 E-value=0.28 Score=52.47 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=22.7
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
.++-.++|+|++|+|||||++.|.+-
T Consensus 39 ~~Ge~iaivG~sGsGKSTLl~ll~gl 64 (253)
T d3b60a1 39 PAGKTVALVGRSGSGKSTIASLITRF 64 (253)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcc
Confidence 45668999999999999999999764
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=83.41 E-value=0.27 Score=49.23 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=19.3
Q ss_pred EEEEEecCCCChhHHHHHHHc
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRK 91 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~ 91 (1527)
+|+++|+||+||||+...|..
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.29 E-value=0.25 Score=48.95 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.6
Q ss_pred EEEEEecCCCChhHHHHHHHc
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRK 91 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~ 91 (1527)
.|.|.|++|+|||||+..+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999998753
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=83.28 E-value=0.17 Score=51.38 Aligned_cols=27 Identities=19% Similarity=0.179 Sum_probs=22.6
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccC
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSG 947 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g 947 (1527)
+...|+|+|++|+||||++..|....|
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~g 31 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 345789999999999999999976544
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.20 E-value=0.25 Score=50.95 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.2
Q ss_pred CCEEEEEecCCCChhHHHHHHHcc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
|..|+|.|.+|+|||||.+.|...
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999988653
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.12 E-value=0.31 Score=52.89 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=23.9
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccc
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTN 93 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~ 93 (1527)
..++-.++|+|+.|+|||||++.+.+--
T Consensus 59 i~~Ge~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 59 IEKGEMLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3566789999999999999999998743
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=83.00 E-value=0.29 Score=48.16 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=20.8
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
.+..++++|.+|+||||+...|...
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456788999999999999998753
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=82.89 E-value=0.17 Score=50.01 Aligned_cols=26 Identities=12% Similarity=0.061 Sum_probs=22.1
Q ss_pred eeeeEEEEEeecCCCCCcHHhHHhhc
Q psy1758 920 YILIKSAIIAHVDHGKTTLIDHLLRQ 945 (1527)
Q Consensus 920 ~~irnIaIiGh~d~GKTTLv~~Ll~~ 945 (1527)
.+...|.|+|.+|+||||+..+|...
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999644
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.80 E-value=0.16 Score=51.37 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.8
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
++..|.++|.+|+|||||.+.|...
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6678889999999999999998653
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=82.73 E-value=0.18 Score=54.06 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.6
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQ 945 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~ 945 (1527)
..-.+||+|++|+|||||++.|++.
T Consensus 40 ~Ge~iaivG~sGsGKSTLl~ll~gl 64 (253)
T d3b60a1 40 AGKTVALVGRSGSGKSTIASLITRF 64 (253)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhcc
Confidence 3457999999999999999999754
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.73 E-value=0.3 Score=52.14 Aligned_cols=27 Identities=11% Similarity=0.297 Sum_probs=23.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN 93 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~ 93 (1527)
.++-.++|+|++|+|||||++.+.+--
T Consensus 38 ~~Ge~vaivG~sGsGKSTLl~li~gl~ 64 (251)
T d1jj7a_ 38 RPGEVTALVGPNGSGKSTVAALLQNLY 64 (251)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 456689999999999999999987743
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=82.67 E-value=0.27 Score=52.17 Aligned_cols=27 Identities=15% Similarity=0.363 Sum_probs=22.8
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN 93 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~ 93 (1527)
.++-.++|+|++|+|||||++.|.+-.
T Consensus 26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 455689999999999999999987643
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=82.59 E-value=0.34 Score=51.16 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.2
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN 93 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~ 93 (1527)
.++-.++++|+.|+|||||++.+.+-.
T Consensus 30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 30 KDGEFLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 455689999999999999999998754
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.52 E-value=0.3 Score=51.56 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.2
Q ss_pred CEEEEEecCCCChhHHHHHHHccc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRKTN 93 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~~~ 93 (1527)
-.++++|+.|+|||||++.+.+-.
T Consensus 25 e~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCChHHHHHHHHHcCC
Confidence 368899999999999999998854
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=82.34 E-value=0.23 Score=49.07 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=20.8
Q ss_pred eEEEEEeecCCCCCcHHhHHhhcc
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQS 946 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~~ 946 (1527)
+-|+|.|++|+||||++..|....
T Consensus 5 ~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 5 NILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999997653
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=82.27 E-value=0.72 Score=49.17 Aligned_cols=78 Identities=12% Similarity=0.033 Sum_probs=43.5
Q ss_pred CeEEEEEeCCCCCC-chHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHH----cCCccE-EEEeccCCCCCChhhh
Q psy1758 984 GTRINIIDTPGHAD-FGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK----LGFKPI-VVVNKIDRSNARPEWV 1057 (1527)
Q Consensus 984 ~~~iniiDTPGh~d-f~~ev~~~l~~aD~ailVVDa~~G~~~qt~~~~~~~~~----~glp~I-vviNKiD~~~a~~~~v 1057 (1527)
.+.+.++|||+... ...........||.+++++++..............+.. .+++.. +++|+.+.... .+.
T Consensus 115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~--~~~ 192 (269)
T d1cp2a_ 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANE--YEL 192 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC--HHH
T ss_pred cCCEEEeccCCccchhHHHHHHHhhccCceeeccchhhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCc--cch
Confidence 46799999997543 33344445567899998887743211122222222322 344433 67899876542 234
Q ss_pred HHHHHH
Q psy1758 1058 VDATFD 1063 (1527)
Q Consensus 1058 ~~~~~~ 1063 (1527)
.+++.+
T Consensus 193 ~~~~~~ 198 (269)
T d1cp2a_ 193 LDAFAK 198 (269)
T ss_dssp HHHHHH
T ss_pred hhhhHh
Confidence 444444
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=82.00 E-value=0.32 Score=51.40 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=23.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN 93 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~ 93 (1527)
.++=.++++|+.|+|||||++.+.+-.
T Consensus 27 ~~Ge~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 345689999999999999999998754
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.95 E-value=0.18 Score=50.40 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=20.3
Q ss_pred EEEEEeecCCCCCcHHhHHhhcc
Q psy1758 924 KSAIIAHVDHGKTTLIDHLLRQS 946 (1527)
Q Consensus 924 nIaIiGh~d~GKTTLv~~Ll~~~ 946 (1527)
||+|+|+||+||||++..|...-
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999999886553
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.92 E-value=0.2 Score=51.07 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=24.2
Q ss_pred ceeeeEEEEEeecCCCCCcHHhHHhhccC
Q psy1758 919 IYILIKSAIIAHVDHGKTTLIDHLLRQSG 947 (1527)
Q Consensus 919 ~~~irnIaIiGh~d~GKTTLv~~Ll~~~g 947 (1527)
+.+..-|+|+|++|+||||++..|...-|
T Consensus 5 ~~~~~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 5 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567799999999999999999987543
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.78 E-value=0.58 Score=50.17 Aligned_cols=24 Identities=17% Similarity=0.190 Sum_probs=20.5
Q ss_pred CCEEEEEecCCCChhHHHHHHHcc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
..++.++|++|+|||+|+..|...
T Consensus 39 k~n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 39 KNNPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCcEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999887653
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.72 E-value=0.3 Score=49.37 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.2
Q ss_pred EEEEecCCCChhHHHHHHHcc
Q psy1758 72 VTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 72 V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
|+|+|++|+|||||+++|...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999764
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=81.63 E-value=0.3 Score=49.52 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=23.4
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHcc
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
..+|..|+|-|..|+||||+++.|...
T Consensus 6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 6 GTQPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 356778999999999999999998764
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=81.53 E-value=0.29 Score=48.25 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHHHHHcc
Q psy1758 71 IVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 71 ~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
+|+++|.+|+||||+...|...
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988764
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=81.45 E-value=0.2 Score=49.88 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=20.0
Q ss_pred eEEEEEeecCCCCCcHHhHHhhc
Q psy1758 923 IKSAIIAHVDHGKTTLIDHLLRQ 945 (1527)
Q Consensus 923 rnIaIiGh~d~GKTTLv~~Ll~~ 945 (1527)
+-|+|.|.+|+||||+++.|...
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998643
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=81.41 E-value=0.38 Score=49.64 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.8
Q ss_pred CCCEEEEEecCCCChhHHHHHHHcc
Q psy1758 68 RAPIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 68 r~~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
+..+|+|-|+||+||||+...|...
T Consensus 2 k~i~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 2 KTIQIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998763
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.40 E-value=0.37 Score=48.29 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=19.9
Q ss_pred CEEEEEecCCCChhHHHHHHHc
Q psy1758 70 PIVTIMGHVDHGKTSLLDYIRK 91 (1527)
Q Consensus 70 ~~V~IvG~~~~GKTSLl~~L~~ 91 (1527)
.+|+|+|+||+||||+...|..
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=81.20 E-value=0.2 Score=53.16 Aligned_cols=25 Identities=24% Similarity=0.108 Sum_probs=21.8
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQ 945 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~ 945 (1527)
..-.+||+|+.|+|||||++.|++.
T Consensus 27 ~Ge~vaivG~sGsGKSTLl~ll~gl 51 (242)
T d1mv5a_ 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (242)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4457999999999999999999754
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=81.19 E-value=0.38 Score=50.84 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=23.1
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN 93 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~ 93 (1527)
.++-.++|+|++|+|||||++.+.+-.
T Consensus 29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 29 PAGQIYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp CSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 455689999999999999999997753
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=81.01 E-value=0.36 Score=49.81 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.8
Q ss_pred CCEEEEEecCCCChhHHHHHHHcc
Q psy1758 69 APIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 69 ~~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
+..|+|+|++|+|||||++.|...
T Consensus 2 G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhh
Confidence 346889999999999999999765
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=80.81 E-value=0.26 Score=51.78 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=23.4
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHccc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKTN 93 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~~ 93 (1527)
.++=.++++|+.|+|||||++.+.+-.
T Consensus 24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 455589999999999999999998854
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.79 E-value=0.21 Score=53.33 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=21.7
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQ 945 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~ 945 (1527)
..-.+||+|+.|+|||||++.|++.
T Consensus 39 ~Ge~vaivG~sGsGKSTLl~li~gl 63 (251)
T d1jj7a_ 39 PGEVTALVGPNGSGKSTVAALLQNL 63 (251)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcc
Confidence 3457999999999999999999754
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=80.63 E-value=0.24 Score=50.44 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=22.9
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhccC
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQSG 947 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~~g 947 (1527)
+..+|+|+|+||+||||+...|...-|
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHC
Confidence 456899999999999999999986543
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.45 E-value=0.21 Score=52.58 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=21.0
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQ 945 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~ 945 (1527)
+.-.++|+|+.|||||||++.|.+.
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~gl 54 (230)
T d1l2ta_ 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (230)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCcchhhHhccCC
Confidence 3447999999999999999988643
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=80.32 E-value=0.29 Score=51.56 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=22.9
Q ss_pred cCCCEEEEEecCCCChhHHHHHHHcc
Q psy1758 67 VRAPIVTIMGHVDHGKTSLLDYIRKT 92 (1527)
Q Consensus 67 ~r~~~V~IvG~~~~GKTSLl~~L~~~ 92 (1527)
.++=.++++|+.|+|||||++.+.+-
T Consensus 23 ~~Gei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 23 RAGEILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp ETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45668999999999999999999873
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=80.32 E-value=0.21 Score=51.40 Aligned_cols=25 Identities=20% Similarity=0.032 Sum_probs=21.3
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQ 945 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~ 945 (1527)
+.-.++|+|+.|+|||||++.|.+.
T Consensus 26 ~Gei~~l~G~NGsGKSTLl~~i~gl 50 (200)
T d1sgwa_ 26 KGNVVNFHGPNGIGKTTLLKTISTY 50 (200)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcc
Confidence 3446899999999999999999754
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=80.12 E-value=0.39 Score=50.78 Aligned_cols=28 Identities=36% Similarity=0.438 Sum_probs=23.9
Q ss_pred ccCCCEEEEEecCCCChhHHHHHHHccc
Q psy1758 66 LVRAPIVTIMGHVDHGKTSLLDYIRKTN 93 (1527)
Q Consensus 66 ~~r~~~V~IvG~~~~GKTSLl~~L~~~~ 93 (1527)
..++-.++++|+.|+|||||++.+.+-.
T Consensus 29 i~~Gei~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3456689999999999999999998754
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.12 E-value=0.25 Score=53.61 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=21.7
Q ss_pred eeeEEEEEeecCCCCCcHHhHHhhc
Q psy1758 921 ILIKSAIIAHVDHGKTTLIDHLLRQ 945 (1527)
Q Consensus 921 ~irnIaIiGh~d~GKTTLv~~Ll~~ 945 (1527)
+.-.+||+|+.|+|||||++.|++.
T Consensus 61 ~Ge~vaivG~nGsGKSTLl~~i~Gl 85 (281)
T d1r0wa_ 61 KGEMLAITGSTGSGKTSLLMLILGE 85 (281)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4457999999999999999999754
|