Psyllid ID: psy17605

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-
Protein Sequence
MGRFFKDFFCYNFLTHYFLIVSQVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQVKPNADHLHLSSVYLANYTSYVTTFKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINIPRPRTGISLELIRFPELFMYAVRISVARYTSLQLELTQWTSDLEIVGSSPSHIHKLRGNSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINIPRPRTGILINIKCKAWAKNIKHLRDGSGSVHFEIMVD
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEEcccccEEEcccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccEEEccccccccccccccccccccccEEEEEEccccccEEEEEEEccEEEcccccccHHHccccHHHHHcccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEcccccccccccccHHHHHHHHHHHcccccccccEEEEEEEcccccccccccEEEccccccccccccccccccccccEEEEEEcccccccEEEEEEEEEcccccccccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEEEHEEccccccccccccccccccHHHHHHHHHcccccccccccccccccccccEEccccccEEEccccccccccEEEEEEccccHHHHHHcccEEEccccccccEEccccccccccccEEEEEEEcccccEEEEEEEEEEEHHHHHHcccccHcccccEHHHHHHcccccccHHHHHHHHEEccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEccccccEEEEccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEccHHccccccccccccccccccHHHHHccccccccccccccccccccccccccccEEEEEHHHcccccccccccccccccEEEEEEcEEEccccccccccccccHHccHHccHcHHcccccccccccEEEEEEccccHcHHHHcccEEEccccccccEEccccccccccccEEEEEEEcccccEEEEEEEEEEEEcEccccccccEEEEEEEEc
Coil and Loop (DISEMBL)
MGRFFKDFFCYNFLTHYFLIVSQVYgwipeyyndtqnlprgmpgqlRNYIENvartnpkqvkpnadhlhLSSVYLANYTSYVTTFKTIDSRRLNTVWVscegenpadienlgdikyypkqgfagyffpyensegylsplvainiprprtgislelirfpeLFMYAVRISVARYTSLQLELTQWtsdleivgsspshihklrgnsekgQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQtldprtprwlldesligtnpgigfrpipvesdvgssliwykasdrsnyQYWIDSLIKFLDvykrpgltpgrgqniyncdydrppgrgqvcdvdvklfdpcteenhfnyhksgpclFLKLNKTLCAClglrldtrvlrdydrppgrgqvcdvdvklfdpcteenhfnyhksgpclflKLNKvygwipeyyndtqnlprgmpgqlRNYIENVARTNPKQLNTVWVScegenpadienlgdikyypkqgfagyffpyensegylsplvainiprprtgilINIKCKAWAKNIKhlrdgsgsvHFEIMVD
Flexible Loop (DISEMBL)
MGRFFKDFFCYNFLTHYFLIVSQVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQVKPNADHLHLSSVYLANYTSYVTTFKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINIPRPRTGISLELIRFPELFMYAVRISVARYTSLQLELTQWTSDLEIVGSSPshihklrgnsekgqKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTrvlrdydrppgrgqvcdVDVKLFDPCTEENhfnyhksgpcLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINIPRPRTGILINIKCKAWAKNIKhlrdgsgsvhfeimvd
Low Complexity Region (SEG)
MGRFFKDFFCYNFLTHYFLIVSQVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQVKPNADHLHLSSVYLANYTSYVTTFKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINIPRPRTGISLELIRFPELFMYAVRISVARYTSLQLELTQWTSDLEIVGSSPSHIHKLRGNSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINIPRPRTGILINIKCKAWAKNIKHLRDGSGSVHFEIMVD
Disordered region (IsUnstruct)
***FFKDFFCYNFLTHYFLIVSQVYGWIPEYYNDTQNLPRGMPGQLRNYIENVA*********NADHLHLSSVYLANYTSYVTTFKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINIPRPRTGISLELIRFPELFMYAVRISVARYTSLQLELTQWTSDLEIVG******************SIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINIPRPRTGILINIKCKAWAKNIKHLRDGSGSVHF*****
Disordered Region (DISOPRED)
*GRFFKDFFCYNFLTHYFLIVSQVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQVKPNADHLHLSSVYLANYTSYVTTFKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINIPRPRTGISLELIRFPELFMYAVRISVAR***L******WT***EIVGSSPSHIHKLRGNSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIY*****RPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINIPRPRTGILINIKCKAWAKNIKHLRDGSGSVHFEIMVD
Disordered Region (DISEMBL)
MGRFFKDFFCYNFLTHYFLIVSQVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQVKPNADHLHLSSVYLANYTSYVTTFKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINIPRPRTGISLELIRFPELFMYAVRISVARYTSLQLELTQWTSDLEIVGSSPSHIHKLRGNSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINIPRPRTGILINIKCKAWAKNIKHLRDGSGSVHFEIMVD
Disordered Region (DISPRO)
*GRFFKDFFCYNFLTHYFLIVSQVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQVKPNADHLHLSSVYLANYTSYVTTFKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINIPRPRTGISLELIRFPELFMYAVRISVARYTSLQLELTQWTSDLEIVGSSPSHIHKLRGNSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINIPRPRTGILINIKCKAWAKNIKHLRDGSGSVHFEIMVD
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRFFKDFFCYNFLTHYFLIVSQVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQVKPNADHLHLSSVYLANYTSYVTTFKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINIPRPRTGISLELIRFPELFMYAVRISVARYTSLQLELTQWTSDLEIVGSSPSHIHKLRGNSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINIPRPRTGILINIKCKAWAKNIKHLRDGSGSVHFEIMVD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	551	2.2.26 [Sep-21-2011]
Q24048	323	Sodium/potassium-transpor	yes	N/A	0.504	0.860	0.508	3e-96
P25169	315	Sodium/potassium-transpor	N/A	N/A	0.304	0.533	0.444	5e-39
Q24046	309	Sodium/potassium-transpor	no	N/A	0.312	0.556	0.417	8e-36
Q93235	320	Sodium/potassium-transpor	yes	N/A	0.255	0.440	0.288	2e-16
A8X4W9	326	Probable sodium/potassium	N/A	N/A	0.255	0.432	0.286	1e-14
Q9XUY5	317	Probable sodium/potassium	no	N/A	0.255	0.444	0.292	2e-14
Q3T0C6	279	Sodium/potassium-transpor	yes	N/A	0.312	0.616	0.307	3e-11
P08251	305	Sodium/potassium-transpor	yes	N/A	0.375	0.678	0.237	6e-11
Q8WMG3	290	Sodium/potassium-transpor	yes	N/A	0.426	0.810	0.246	6e-11
Q5J583	290	Sodium/potassium-transpor	N/A	N/A	0.426	0.810	0.249	8e-11

>sp|Q24048|ATPB2_DROME Sodium/potassium-transporting ATPase subunit beta-2 OS=Drosophila melanogaster GN=nrv2 PE=1 SV=2

 Score =  352 bits (904), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 172/338 (50%), Positives = 223/338 (65%), Gaps = 60/338 (17%)

Query: 215 LRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPV 274
           +    +IG+FY+ FY VLAA+  + MWAF QTLDPR P+W LD SLIGTNPG+GFRP+P 
Sbjct: 45  MDSWAKIGIFYVAFYGVLAALVAICMWAFFQTLDPRIPKWTLDRSLIGTNPGLGFRPLPP 104

Query: 275 ESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQV 334
             +V S+LIWYK +   NY++W DSL  FL VYK PGLTP               GRGQ 
Sbjct: 105 VDNVESTLIWYKGTQHENYKHWTDSLDDFLAVYKVPGLTP---------------GRGQ- 148

Query: 335 CDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVC 394
                         N +N                  C           DY++PP +GQVC
Sbjct: 149 --------------NIYN------------------C-----------DYNQPPPKGQVC 165

Query: 395 DVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIEN 454
           DVD+K + PCT+EN+++YHKS PC+FLKLNK+YGWIPEYYN + +LP  MP  L+ YI  
Sbjct: 166 DVDIKTWSPCTKENNYSYHKSAPCIFLKLNKIYGWIPEYYNRSNDLPANMPASLKTYIAE 225

Query: 455 VARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINI 514
           V +T P++LNT+WVSCEGENPAD EN+G + Y P +GF GYF+PY+NSEGYLSPLVA++ 
Sbjct: 226 VEKTQPEKLNTIWVSCEGENPADQENIGAVNYLPIRGFPGYFYPYQNSEGYLSPLVAVHF 285

Query: 515 PRPRTGILINIKCKAWAKNIKHLR-DGSGSVHFEIMVD 551
            RP+ GI+IN++C+AWA+NI H R +  GSVH+E+++D
Sbjct: 286 QRPKRGIIINVECRAWARNIIHDRKERIGSVHYELLID 323

This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. The beta subunit regulates, through assembly of alpha/beta heterodimers, the number of sodium pumps transported to the plasma membrane.
Drosophila melanogaster (taxid: 7227)

>sp|P25169|AT1B1_ARTSF Sodium/potassium-transporting ATPase subunit beta OS=Artemia franciscana PE=2 SV=1

 Score =  162 bits (411), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 76/171 (44%), Positives = 108/171 (63%), Gaps = 3/171 (1%)

Query: 383 DYDRPPGRGQVCDVDVKLF-DPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLP 441
           D+D+PP  G+ C+ +V+L  D CT+EN+F Y    PC+ +KL   +GW PE YN +  +P
Sbjct: 146 DFDKPPQEGKACNFNVELLGDHCTKENNFGYELGKPCVLIKLTD-FGWRPEVYNSSAEVP 204

Query: 442 RGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYEN 501
             MP  L++YI+++   N   +N VW+SCEGE   D E +G I Y P +GF  Y++PY N
Sbjct: 205 EDMPADLKSYIKDIETGNKTHMNMVWLSCEGETANDKEKIGTITYTPFRGFPAYYYPYLN 264

Query: 502 SEGYLSPLVAINIPRPRTGILINIKCKAWAKNIKHLRDGS-GSVHFEIMVD 551
             GYL+P+VA+     + G  +N++CKAWA NI   R    GSVHFEI +D
Sbjct: 265 VPGYLTPVVALQFGSLQNGQAVNVECKAWANNISRDRQRRLGSVHFEIRMD 315

This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. The beta subunit regulates, through assembly of alpha/beta heterodimers, the number of sodium pumps transported to the plasma membrane.

Artemia franciscana (taxid: 6661)

>sp|Q24046|ATPB1_DROME Sodium/potassium-transporting ATPase subunit beta-1 OS=Drosophila melanogaster GN=nrv1 PE=1 SV=2

 Score =  152 bits (383), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 81/194 (41%), Positives = 117/194 (60%), Gaps = 22/194 (11%)

Query: 374 LRLDTRVLRDYDRPPGR-------GQV------CDVDVKLFDPCTEENHFNYHKSGPCLF 420
           + L    LRDY+   GR       GQV      C V+  LF  C++ N++ Y  + PC+F
Sbjct: 122 IELIDDFLRDYNHTEGRDMKHCGFGQVLEPTDVCVVNTDLFGGCSKANNYGYKTNQPCIF 181

Query: 421 LKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIEN 480
           LKLNK++GWIPE Y+  +   + MP  L+  I N  +T  +Q   VWVSC G    D EN
Sbjct: 182 LKLNKIFGWIPEVYDKEE---KDMPDDLKKVI-NETKTEERQ--QVWVSCNGHLGKDKEN 235

Query: 481 LGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINIPRPRTGILINIKCKAWAKNIKH---L 537
             +I+Y+P QGF  Y++P+ N  GYLSPLVA+    P  G +++++C+AWAKNI++   +
Sbjct: 236 FQNIRYFPSQGFPSYYYPFLNQPGYLSPLVAVQFNSPPKGQMLDVECRAWAKNIQYSGSV 295

Query: 538 RDGSGSVHFEIMVD 551
           RD  GSV F+I++D
Sbjct: 296 RDRKGSVTFQILLD 309

This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. The beta subunit regulates, through assembly of alpha/beta heterodimers, the number of sodium pumps transported to the plasma membrane.

Drosophila melanogaster (taxid: 7227)

>sp|Q93235|AT1B1_CAEEL Sodium/potassium-transporting ATPase subunit beta-1 OS=Caenorhabditis elegans GN=nkb-1 PE=1 SV=1

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 87/163 (53%), Gaps = 22/163 (13%)

Query: 394 CDVDVKLFDP-CTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYI 452
           C  D+ +FD  C+E++ F Y    PC+ + LN++ GW P  Y +       +P ++++  
Sbjct: 165 CRFDLSVFDKGCSEKSDFGYKSGKPCVIISLNRLIGWRPTDYQENS-----VPEEVKDRY 219

Query: 453 ENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAI 512
                    +  ++ ++C G    D E++G + Y P  G  G ++PY  ++GY  P+  +
Sbjct: 220 ---------KAGSIAINCRGATNVDQEHIGKVTYMPSNGIDGRYYPYVFTKGYQQPIAMV 270

Query: 513 ---NIPRPRTGILINIKCKAWAKNIKH-LRDGSGSVHFEIMVD 551
               IPR +   L+ ++C+A+A NI+H +    G V+FE+MV+
Sbjct: 271 KFDTIPRNK---LVIVECRAYALNIEHDISSRLGMVYFEVMVE 310

Non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. The beta subunit regulates, through assembly of alpha/beta heterodimers, the number of sodium pumps transported to the plasma membrane (By similarity). May also may function in the peptidic vesicle transport pathway from the endoplasmic reticulum for the defecation behaviors.

Caenorhabditis elegans (taxid: 6239)

>sp|A8X4W9|AT1B3_CAEBR Probable sodium/potassium-transporting ATPase subunit beta-3 OS=Caenorhabditis briggsae GN=nkb-3 PE=3 SV=3

 Score = 82.0 bits (201), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 23/164 (14%)

Query: 394 CDVDVKLFDP--CTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNY 451
           C  D+ LF+   C  ++ + +    PC+ + LN++ GW P  Y D  ++P  +  + ++ 
Sbjct: 170 CRFDLGLFEKANCGAKDQYGFKSGKPCVVVSLNRLIGWRPVDY-DGNSVPEEIKSRYKS- 227

Query: 452 IENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVA 511
                        ++ ++CEG  P D E+LG +KY P+ G  G ++PY     Y  P+  
Sbjct: 228 ------------GSITINCEGATPFDKEHLGKVKYIPEAGIDGRYYPYVFLPSYQQPIAM 275

Query: 512 I---NIPRPRTGILINIKCKAWAKNIKH-LRDGSGSVHFEIMVD 551
           +    IPR +   L+ ++C+A+A NI+H +    G V+FE+ V+
Sbjct: 276 VKFDTIPRNK---LVIVECRAYASNIEHDVSTRIGMVYFELFVE 316

This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. The beta subunit regulates, through assembly of alpha/beta heterodimers, the number of sodium pumps transported to the plasma membrane. Implicated in genomic response to various soil bacteria that affects fitness, lifespan and brood size.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q9XUY5|AT1B3_CAEEL Probable sodium/potassium-transporting ATPase subunit beta-3 OS=Caenorhabditis elegans GN=nkb-3 PE=3 SV=1

 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 85/164 (51%), Gaps = 23/164 (14%)

Query: 394 CDVDVKLFDP--CTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNY 451
           C  D+ LF+   C  ++ + Y    PC+ + LN++ GW P  Y+D  ++P  + G+ +  
Sbjct: 161 CRFDLGLFEKANCGAKDQYGYKSGKPCVAVSLNRLIGWRPVNYDDG-SVPEEIKGRYKP- 218

Query: 452 IENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVA 511
                        ++ ++CEG    D E+LG +KY P+ G  G ++PY     Y  P+  
Sbjct: 219 ------------GSITINCEGATSFDKEHLGKVKYIPETGIDGRYYPYVFVPSYQQPIAM 266

Query: 512 I---NIPRPRTGILINIKCKAWAKNIKH-LRDGSGSVHFEIMVD 551
           +    IPR +   L+ ++C+A+A NI+H +    G V+FE+ V+
Sbjct: 267 VKFDTIPRNK---LVIVECRAYASNIEHDISTRLGMVYFELFVE 307

This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. The beta subunit regulates, through assembly of alpha/beta heterodimers, the number of sodium pumps transported to the plasma membrane (By similarity). Implicated in genomic response to various soil bacteria that affects fitness, lifespan and brood size.

Caenorhabditis elegans (taxid: 6239)

>sp|Q3T0C6|AT1B3_BOVIN Sodium/potassium-transporting ATPase subunit beta-3 OS=Bos taurus GN=ATP1B3 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 96/208 (46%), Gaps = 36/208 (17%)

Query: 221 IGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVES-DVG 279
           I +FYLVFY  LAA+    MWA LQTL+   P++  D+     +PG+   P PV + D  
Sbjct: 39  ILLFYLVFYGFLAALFSFTMWAMLQTLNDEVPKY-RDQI---PSPGLMVFPKPVSALDFS 94

Query: 280 SSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCD----YDRPPGRGQVC 335
            SL     SD  +YQ +ID L KFL  Y   GL     +N+ +C     +++       C
Sbjct: 95  FSL-----SDAESYQGYIDDLKKFLKPY---GLE--EQKNLTDCTNGTFFEQKGPEYTAC 144

Query: 336 DVDVKLFDPCT--EENHFNYHKSGPCLFLKLNKTL---------CACLGLRLDTRVLRDY 384
              + L + C+  ++  F Y +  PC+ +K+N+ +           C G    T  L  Y
Sbjct: 145 QFPLALLEACSGVDDPTFGYQEGKPCILVKMNRIIGLKPQGEPRIECTGKSESTAFLSTY 204

Query: 385 DRPPGRGQVCDVDVKLFDPCTEENHFNY 412
              P  G    +D+K F    ++ H NY
Sbjct: 205 ---PSNGT---IDLKYFPYYGKKLHGNY 226

This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. The exact function of the beta-3 subunit is not known.

Bos taurus (taxid: 9913)

>sp|P08251|AT1B1_CHICK Sodium/potassium-transporting ATPase subunit beta-1 OS=Gallus gallus GN=ATP1B1 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 104/244 (42%), Gaps = 37/244 (15%)

Query: 328 PPGRGQVCDV----------DVKLFDPCTE--ENHFNYHKSGPCLFLKLNKTLCACLGLR 375
           PPG  QV  V          D K +DP  +  E   N + +G       N     C  + 
Sbjct: 75  PPGLTQVPQVQKTEISFTVNDPKSYDPYVKNLEGFLNKYSAGE---QTDNIVFQDCGDIP 131

Query: 376 LDTRVLRDYDRPPGRGQVCDVDVKLFDPCT--EENHFNYHKSGPCLFLKLNKVYGWIPEY 433
            D +    Y+   G+ +VC    +  + C+  ++N F Y    PC+ +KLN++ G+ P+ 
Sbjct: 132 TDYKERGPYNDAQGQKKVCKFKREWLENCSGLQDNTFGYKDGKPCILVKLNRIIGFKPK- 190

Query: 434 YNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFA 493
             + ++LP  + G+   Y+             + V C  +   D + +G ++YY   G+ 
Sbjct: 191 APENESLPSDLAGKYNPYL-------------IPVHCVAKRDEDADKIGMVEYYGMGGYP 237

Query: 494 GY---FFPYEN---SEGYLSPLVAINIPRPRTGILINIKCKAWAKNIKHLRDGSGSVHFE 547
           G+   ++PY        YL PLVA+        + + ++CK + +NI++         F+
Sbjct: 238 GFALQYYPYYGRLLQPQYLQPLVAVQFTNLTYDVEVRVECKEYGQNIQYSDKDRFQGRFD 297

Query: 548 IMVD 551
           I  D
Sbjct: 298 IKFD 301

This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. The beta subunit regulates, through assembly of alpha/beta heterodimers, the number of sodium pumps transported to the plasma membrane.

Gallus gallus (taxid: 9031)

>sp|Q8WMG3|AT1B2_RABIT Sodium/potassium-transporting ATPase subunit beta-2 OS=Oryctolagus cuniculus GN=ATP1B2 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 128/345 (37%), Gaps = 110/345 (31%)

Query: 221 IGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVGS 280
           I +FYLVFY  L AM  + MW  LQT+   TP++   +  + T PG+  RP     DV  
Sbjct: 40  ILLFYLVFYGFLTAMFTLTMWVMLQTVSEHTPKY---QDRLAT-PGLMIRPKTENLDVIV 95

Query: 281 SLIWYKASDRSNYQYWIDSLIKFLDVY-------KRPGLTPGRGQNIYNCDYDRPPGRGQ 333
           ++     SD  ++   +  L KFL+ Y       K     PGR        Y   P  G 
Sbjct: 96  NV-----SDTESWDQHVQKLNKFLEPYNDSIQAQKNDVCRPGR--------YYEQPDNGV 142

Query: 334 VCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQV 393
           +                 NY K   C F +     C+ +G                    
Sbjct: 143 L-----------------NYPKRA-CQFNRTQLGNCSGIG-------------------- 164

Query: 394 CDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIE 453
                   DP     H+ Y    PC+F+K+N+V  +   Y    Q++             
Sbjct: 165 --------DP----THYGYSTGQPCVFIKMNRVINF---YAGANQSMN------------ 197

Query: 454 NVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQG-FAGYFFPYENSE---GYLSPL 509
                         V+C G+   D ENLG+   +P  G     +FPY   +    Y  PL
Sbjct: 198 --------------VTCAGKRDEDAENLGNFVMFPANGNIDLMYFPYYGKKFHVNYTQPL 243

Query: 510 VAINIPRPRTGILINIKCKAWAKNIK--HLRDG-SGSVHFEIMVD 551
           VA+        + +N++C+  A NI     RD  +G V F++ ++
Sbjct: 244 VAVKFLNVTPNVEVNVECRINAANIATDDERDKFAGRVAFKLRIN 288

This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. The exact function of the beta-2 subunit is not known.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q5J583|AT1B2_OCHCU Sodium/potassium-transporting ATPase subunit beta-2 OS=Ochotona curzoniae GN=ATP1B2 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 128/345 (37%), Gaps = 110/345 (31%)

Query: 221 IGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVGS 280
           I +FYLVFY  L AM  + MW  LQT+   TP++   +  + T PG+  RP     DV  
Sbjct: 40  ILLFYLVFYGFLTAMFTLTMWVMLQTVSDHTPKY---QDRLAT-PGLMIRPKTENLDVIV 95

Query: 281 SLIWYKASDRSNYQYWIDSLIKFLDVY-------KRPGLTPGRGQNIYNCDYDRPPGRGQ 333
           ++     SD  ++   +  L KFL+ Y       K     PGR        Y   P  G 
Sbjct: 96  NV-----SDTESWDQHVQKLNKFLEPYNDSIQAQKNDVCRPGR--------YYEQPDNGV 142

Query: 334 VCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQV 393
           +                 NY K   C F +     C+ +G                    
Sbjct: 143 L-----------------NYPKRA-CQFNRTQLGNCSGIG-------------------- 164

Query: 394 CDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIE 453
                   DP     H+ Y    PC+F+K+N+V   I  Y    Q++             
Sbjct: 165 --------DP----THYGYSTGQPCVFIKMNRV---INFYAGANQSMN------------ 197

Query: 454 NVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQG-FAGYFFPYENSE---GYLSPL 509
                         V+C G+   D ENLG+   +P  G     +FPY   +    Y  PL
Sbjct: 198 --------------VTCAGKRDEDAENLGNFVMFPANGNIDLMYFPYYGKKFHVNYTQPL 243

Query: 510 VAINIPRPRTGILINIKCKAWAKNIK--HLRDG-SGSVHFEIMVD 551
           VA+        + +N++C+  A NI     RD  +G V F++ ++
Sbjct: 244 VAVKFLNVTPNVEVNVECRINAANIATDDERDKFAGRVAFKLRIN 288

This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. The exact function of the beta-2 subunit is not known.

Ochotona curzoniae (taxid: 130825)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	551
195471667	323	GE18402 [Drosophila yakuba] gi|194174225	0.508	0.866	0.511	1e-95
242024010	319	sodium/potassium-transporting ATPase sub	0.475	0.821	0.552	3e-95
195155698	323	GL25960 [Drosophila persimilis] gi|19411	0.508	0.866	0.508	4e-95
125987303	323	GA21652 [Drosophila pseudoobscura pseudo	0.508	0.866	0.508	5e-95
194862688	323	GG23580 [Drosophila erecta] gi|190661940	0.504	0.860	0.508	1e-94
194760260	323	GF14479 [Drosophila ananassae] gi|190616	0.504	0.860	0.514	1e-94
17137212	323	nervana 2, isoform C [Drosophila melanog	0.504	0.860	0.508	2e-94
195338751	323	GM13825 [Drosophila sechellia] gi|194129	0.504	0.860	0.508	2e-94
195030352	323	GH10786 [Drosophila grimshawi] gi|193904	0.522	0.891	0.498	2e-94
17137214	322	nervana 2, isoform A [Drosophila melanog	0.497	0.850	0.514	3e-94

>gi|195471667|ref|XP_002088124.1| GE18402 [Drosophila yakuba] gi|194174225|gb|EDW87836.1| GE18402 [Drosophila yakuba]

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 174/340 (51%), Positives = 226/340 (66%), Gaps = 60/340 (17%)

Query: 213 QVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPI 272
           + +    +IG+FY+ FY VLAA+  + MWAF QTLDPR P+W LD SLIGTNPG+GFRP+
Sbjct: 43  RTMDSWAKIGIFYVAFYGVLAALVAICMWAFFQTLDPRIPKWTLDRSLIGTNPGLGFRPL 102

Query: 273 PVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRG 332
           P   +V S+LIWYK +   NY++W DSL +FL VYK PGLTP               GRG
Sbjct: 103 PPVDNVESTLIWYKGTQHENYKHWTDSLDEFLAVYKVPGLTP---------------GRG 147

Query: 333 QVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQ 392
           Q               N +N                  C           DY++PP +GQ
Sbjct: 148 Q---------------NIYN------------------C-----------DYNQPPPKGQ 163

Query: 393 VCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYI 452
           VCDVD+K + PCT+EN+++YHKS PC+FLKLNK+YGW+PEYYN +QNLP  MP  L+ YI
Sbjct: 164 VCDVDIKTWSPCTKENNYSYHKSAPCIFLKLNKIYGWVPEYYNTSQNLPVSMPLSLKTYI 223

Query: 453 ENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAI 512
             V +T P++LNT+WVSCEGENPAD EN+G + Y P +GF GYF+PY+NSEGYLSPLVA+
Sbjct: 224 AEVEKTQPEKLNTIWVSCEGENPADQENIGAVNYLPIRGFPGYFYPYQNSEGYLSPLVAV 283

Query: 513 NIPRPRTGILINIKCKAWAKNIKHLR-DGSGSVHFEIMVD 551
           +  RP+ GI+IN++CKAWA+NI H R +  GSVH+E+++D
Sbjct: 284 HFQRPKRGIIINVECKAWARNIIHDRKERIGSVHYELLID 323

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024010|ref|XP_002432423.1| sodium/potassium-transporting ATPase subunit beta-2, putative [Pediculus humanus corporis] gi|212517856|gb|EEB19685.1| sodium/potassium-transporting ATPase subunit beta-2, putative [Pediculus humanus corporis]

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 178/322 (55%), Positives = 214/322 (66%), Gaps = 60/322 (18%)

Query: 231 VLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVGSSLIWYKASDR 290
           VL A+    MW F QTLDPR P+W LDESLIGTNPG+GFRP+P   +V S+LIWYK +DR
Sbjct: 57  VLMALFAFCMWVFFQTLDPRIPKWKLDESLIGTNPGLGFRPMPDTGNVESTLIWYKGTDR 116

Query: 291 SNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQVCDVDVKLFDPCTEENH 350
            NY+YW+ SL +FL+VY+ PGLTP               GRGQ               N 
Sbjct: 117 ENYKYWVKSLEEFLEVYRTPGLTP---------------GRGQ---------------NI 146

Query: 351 FNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVKLFDPCTEENHF 410
           +N                  C           DY R PG GQVCDVD++ +DPCT +N+F
Sbjct: 147 YN------------------C-----------DYTRKPGPGQVCDVDIRNWDPCTADNYF 177

Query: 411 NYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSC 470
           NYHK+ PC+FLKLNK+YGW+PEYYN T NLP  MP +L+ +I  VART P +LNT+WVSC
Sbjct: 178 NYHKAAPCIFLKLNKIYGWVPEYYNTTDNLPEQMPEELKKHISEVARTKPHELNTIWVSC 237

Query: 471 EGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINIPRPRTGILINIKCKAW 530
           EGENPADIENLG + Y P+ GF GYFFP+EN EGYLSPL AI+I  PR+GI+INI+CKAW
Sbjct: 238 EGENPADIENLGPVTYIPRHGFPGYFFPFENFEGYLSPLTAIHISNPRSGIIINIECKAW 297

Query: 531 AKNIKHLR-DGSGSVHFEIMVD 551
           AKNIKH R D  GSVH E+M+D
Sbjct: 298 AKNIKHNRQDRVGSVHLELMID 319

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195155698|ref|XP_002018738.1| GL25960 [Drosophila persimilis] gi|194114891|gb|EDW36934.1| GL25960 [Drosophila persimilis]

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 173/340 (50%), Positives = 225/340 (66%), Gaps = 60/340 (17%)

Query: 213 QVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPI 272
           + +    +IG+FY+ FY VL A+  + MW F QTLDPR P+W LDES+IGTNPG+GFRP+
Sbjct: 43  RTIDSWAKIGIFYVAFYGVLGALVAICMWVFFQTLDPRIPKWTLDESIIGTNPGLGFRPL 102

Query: 273 PVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRG 332
           P   +V S+LIWYK +   NY++W DSL  FL VYK PGLTP               GRG
Sbjct: 103 PPMDNVESTLIWYKGTQHENYKHWTDSLDDFLAVYKVPGLTP---------------GRG 147

Query: 333 QVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQ 392
           Q               N +N                  C           DY++PP +GQ
Sbjct: 148 Q---------------NIYN------------------C-----------DYNQPPPKGQ 163

Query: 393 VCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYI 452
           VCDVD+K + PCT+EN+++YHKS PC+FLKLNK+YGWIPEYYND+++LP+ MP  L+ YI
Sbjct: 164 VCDVDIKSWTPCTKENNYSYHKSAPCIFLKLNKIYGWIPEYYNDSKDLPQTMPLSLKTYI 223

Query: 453 ENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAI 512
             V +T P +LNT+WVSCEGENPAD EN+G + Y P +GF GYF+PY+NSEGYLSPLVA+
Sbjct: 224 AEVEKTQPHKLNTIWVSCEGENPADQENIGAVNYLPVRGFPGYFYPYQNSEGYLSPLVAV 283

Query: 513 NIPRPRTGILINIKCKAWAKNIKHLR-DGSGSVHFEIMVD 551
           +  RPR GI+IN++CKAWA+NI H R +  GSVH+E+++D
Sbjct: 284 HFQRPRRGIIINVECKAWARNIHHDRKERIGSVHYELLID 323

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125987303|ref|XP_001357414.1| GA21652 [Drosophila pseudoobscura pseudoobscura] gi|54645745|gb|EAL34483.1| GA21652 [Drosophila pseudoobscura pseudoobscura]

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 173/340 (50%), Positives = 225/340 (66%), Gaps = 60/340 (17%)

Query: 213 QVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPI 272
           + +    +IG+FY+ FY VL A+  + MW F QTLDPR P+W LDES+IGTNPG+GFRP+
Sbjct: 43  RTIDSWAKIGIFYVAFYGVLGALVAICMWVFFQTLDPRIPKWTLDESIIGTNPGLGFRPL 102

Query: 273 PVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRG 332
           P   +V S+LIWYK +   NY++W DSL  FL VYK PGLTP               GRG
Sbjct: 103 PPVDNVESTLIWYKGTQHENYKHWTDSLDDFLAVYKVPGLTP---------------GRG 147

Query: 333 QVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQ 392
           Q               N +N                  C           DY++PP +GQ
Sbjct: 148 Q---------------NIYN------------------C-----------DYNQPPPKGQ 163

Query: 393 VCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYI 452
           VCDVD+K + PCT+EN+++YHKS PC+FLKLNK+YGWIPEYYND+++LP+ MP  L+ YI
Sbjct: 164 VCDVDIKSWTPCTKENNYSYHKSAPCIFLKLNKIYGWIPEYYNDSKDLPQTMPLSLKTYI 223

Query: 453 ENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAI 512
             V +T P +LNT+WVSCEGENPAD EN+G + Y P +GF GYF+PY+NSEGYLSPLVA+
Sbjct: 224 AEVEKTQPHKLNTIWVSCEGENPADQENIGAVNYLPVRGFPGYFYPYQNSEGYLSPLVAV 283

Query: 513 NIPRPRTGILINIKCKAWAKNIKHLR-DGSGSVHFEIMVD 551
           +  RPR GI+IN++CKAWA+NI H R +  GSVH+E+++D
Sbjct: 284 HFQRPRRGIIINVECKAWARNIHHDRKERIGSVHYELLID 323

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194862688|ref|XP_001970073.1| GG23580 [Drosophila erecta] gi|190661940|gb|EDV59132.1| GG23580 [Drosophila erecta]

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 172/338 (50%), Positives = 226/338 (66%), Gaps = 60/338 (17%)

Query: 215 LRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPV 274
           +    +IG+FY+ FY VLAA+  + MWAF QTLDPR P+W LD SLIGTNPG+GFRP+P 
Sbjct: 45  MDSWAKIGIFYVAFYGVLAALVAICMWAFFQTLDPRIPKWTLDRSLIGTNPGLGFRPLPP 104

Query: 275 ESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQV 334
             +V S+LIWYK +   NY++W DSL  FL VYK PGLTP               GRGQ 
Sbjct: 105 VDNVESTLIWYKGTQHENYKHWTDSLNDFLAVYKVPGLTP---------------GRGQ- 148

Query: 335 CDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVC 394
                         N +N                  C           DY++PP +GQVC
Sbjct: 149 --------------NIYN------------------C-----------DYNQPPPKGQVC 165

Query: 395 DVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIEN 454
           DVD+K + PCT+EN+++YHKS PC+FLKLNK+YGW+PEYYN++++LP  MP  L+ YI  
Sbjct: 166 DVDIKTWSPCTKENNYSYHKSAPCIFLKLNKIYGWVPEYYNNSRDLPESMPVSLKTYIGE 225

Query: 455 VARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINI 514
           V ++NP++LNT+WVSCEGENPAD EN+G + Y P +GF GYF+PY+NSEGYLSPLVA++ 
Sbjct: 226 VEKSNPEKLNTIWVSCEGENPADQENIGAVNYLPIRGFPGYFYPYQNSEGYLSPLVAVHF 285

Query: 515 PRPRTGILINIKCKAWAKNIKHLR-DGSGSVHFEIMVD 551
            RP+ GI+IN++CKAWA+NI H R +  GSVH+E+++D
Sbjct: 286 QRPKRGIIINVECKAWARNIIHDRKERIGSVHYELLID 323

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194760260|ref|XP_001962359.1| GF14479 [Drosophila ananassae] gi|190616056|gb|EDV31580.1| GF14479 [Drosophila ananassae]

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 174/338 (51%), Positives = 223/338 (65%), Gaps = 60/338 (17%)

Query: 215 LRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPV 274
           +    +IG+FY+ FY VLAA+  + MWAF QTLDPR P+W LD SLIGTNPG+GFRP+P 
Sbjct: 45  IESWAKIGIFYVAFYGVLAALVAICMWAFFQTLDPRIPKWTLDRSLIGTNPGLGFRPLPP 104

Query: 275 ESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQV 334
             +V S+LIWYK +   NY++W DSL  FL VYK PGLTP               GRGQ 
Sbjct: 105 LDNVESTLIWYKGTQHENYKHWTDSLNDFLAVYKVPGLTP---------------GRGQ- 148

Query: 335 CDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVC 394
                         N +N                  C           DY++PP +GQVC
Sbjct: 149 --------------NIYN------------------C-----------DYNQPPPQGQVC 165

Query: 395 DVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIEN 454
           DVD+K + PCT EN+++YHKS PC+FLKLNK+YGWIPEYYN++++LP  MP  L+ YI  
Sbjct: 166 DVDIKSWAPCTRENNYSYHKSAPCIFLKLNKIYGWIPEYYNNSRDLPESMPSSLKTYIAE 225

Query: 455 VARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINI 514
           V ++ P +LNT+WVSCEGENPAD EN+G I Y P +GF GYF+PY+NSEGYLSPLVA++ 
Sbjct: 226 VEKSEPIKLNTIWVSCEGENPADQENIGAINYLPIRGFPGYFYPYQNSEGYLSPLVAVHF 285

Query: 515 PRPRTGILINIKCKAWAKNIKHLR-DGSGSVHFEIMVD 551
            RP+ GI+IN++CKAWA+NI H R D  GSVH+E+++D
Sbjct: 286 QRPKRGIIINVECKAWARNIIHDRKDRIGSVHYELLID 323

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17137212|ref|NP_477168.1| nervana 2, isoform C [Drosophila melanogaster] gi|62471615|ref|NP_001014475.1| nervana 2, isoform F [Drosophila melanogaster] gi|442626443|ref|NP_001260164.1| nervana 2, isoform G [Drosophila melanogaster] gi|12643737|sp|Q24048.2|ATPB2_DROME RecName: Full=Sodium/potassium-transporting ATPase subunit beta-2; AltName: Full=Protein nervana 2; AltName: Full=Sodium/potassium-dependent ATPase subunit beta-2 gi|16648126|gb|AAL25328.1| GH13134p [Drosophila melanogaster] gi|22945809|gb|AAN10600.1| nervana 2, isoform C [Drosophila melanogaster] gi|61678289|gb|AAX52659.1| nervana 2, isoform F [Drosophila melanogaster] gi|220945432|gb|ACL85259.1| nrv2-PC [synthetic construct] gi|220955180|gb|ACL90133.1| nrv2-PC [synthetic construct] gi|440213465|gb|AGB92700.1| nervana 2, isoform G [Drosophila melanogaster]

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 172/338 (50%), Positives = 223/338 (65%), Gaps = 60/338 (17%)

Query: 215 LRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPV 274
           +    +IG+FY+ FY VLAA+  + MWAF QTLDPR P+W LD SLIGTNPG+GFRP+P 
Sbjct: 45  MDSWAKIGIFYVAFYGVLAALVAICMWAFFQTLDPRIPKWTLDRSLIGTNPGLGFRPLPP 104

Query: 275 ESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQV 334
             +V S+LIWYK +   NY++W DSL  FL VYK PGLTP               GRGQ 
Sbjct: 105 VDNVESTLIWYKGTQHENYKHWTDSLDDFLAVYKVPGLTP---------------GRGQ- 148

Query: 335 CDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVC 394
                         N +N                  C           DY++PP +GQVC
Sbjct: 149 --------------NIYN------------------C-----------DYNQPPPKGQVC 165

Query: 395 DVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIEN 454
           DVD+K + PCT+EN+++YHKS PC+FLKLNK+YGWIPEYYN + +LP  MP  L+ YI  
Sbjct: 166 DVDIKTWSPCTKENNYSYHKSAPCIFLKLNKIYGWIPEYYNRSNDLPANMPASLKTYIAE 225

Query: 455 VARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINI 514
           V +T P++LNT+WVSCEGENPAD EN+G + Y P +GF GYF+PY+NSEGYLSPLVA++ 
Sbjct: 226 VEKTQPEKLNTIWVSCEGENPADQENIGAVNYLPIRGFPGYFYPYQNSEGYLSPLVAVHF 285

Query: 515 PRPRTGILINIKCKAWAKNIKHLR-DGSGSVHFEIMVD 551
            RP+ GI+IN++C+AWA+NI H R +  GSVH+E+++D
Sbjct: 286 QRPKRGIIINVECRAWARNIIHDRKERIGSVHYELLID 323

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195338751|ref|XP_002035987.1| GM13825 [Drosophila sechellia] gi|194129867|gb|EDW51910.1| GM13825 [Drosophila sechellia]

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 172/338 (50%), Positives = 223/338 (65%), Gaps = 60/338 (17%)

Query: 215 LRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPV 274
           +    +IG+FY+ FY VLAA+  + MWAF QTLDPR P+W LD SLIGTNPG+GFRP+P 
Sbjct: 45  MDSWAKIGIFYVAFYGVLAALVAICMWAFFQTLDPRIPKWTLDRSLIGTNPGLGFRPLPP 104

Query: 275 ESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQV 334
             +V S+LIWYK +   NY++W DSL  FL VYK PGLTP               GRGQ 
Sbjct: 105 VDNVESTLIWYKGTQHENYKHWTDSLDDFLAVYKVPGLTP---------------GRGQ- 148

Query: 335 CDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVC 394
                         N +N                  C           DY++PP +GQVC
Sbjct: 149 --------------NIYN------------------C-----------DYNQPPPKGQVC 165

Query: 395 DVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIEN 454
           DVD+K + PCT+EN+++YHKS PC+FLKLNK+YGWIPEYYN + +LP  MP  L+ YI  
Sbjct: 166 DVDIKTWSPCTKENNYSYHKSAPCIFLKLNKIYGWIPEYYNRSNDLPVSMPASLKTYIAE 225

Query: 455 VARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINI 514
           V +T P++LNT+WVSCEGENPAD EN+G + Y P +GF GYF+PY+NSEGYLSPLVA++ 
Sbjct: 226 VEKTQPEKLNTIWVSCEGENPADQENIGAVNYLPIRGFPGYFYPYQNSEGYLSPLVAVHF 285

Query: 515 PRPRTGILINIKCKAWAKNIKHLR-DGSGSVHFEIMVD 551
            RP+ GI+IN++C+AWA+NI H R +  GSVH+E+++D
Sbjct: 286 QRPKRGIIINVECRAWARNIIHDRKERIGSVHYELLID 323

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195030352|ref|XP_001988032.1| GH10786 [Drosophila grimshawi] gi|193904032|gb|EDW02899.1| GH10786 [Drosophila grimshawi]

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 174/349 (49%), Positives = 228/349 (65%), Gaps = 61/349 (17%)

Query: 205 EKGQKSIF-QVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGT 263
           ++ + S F + +    +IG+FY+VFY VLAA+  + MWAF QTLDPR P+W LD S+IGT
Sbjct: 34  DEDENSYFGRTIESWAKIGIFYIVFYVVLAALVAICMWAFFQTLDPRIPKWTLDRSIIGT 93

Query: 264 NPGIGFRPIPVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNC 323
           NPG+GFRP+P    V S+LIWYK +   NY++W DSL  FL VYK PGLTP         
Sbjct: 94  NPGLGFRPLPPVEMVESTLIWYKGTQHENYKHWTDSLDDFLAVYKVPGLTP--------- 144

Query: 324 DYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRD 383
                 GRGQ               N +N                  C           D
Sbjct: 145 ------GRGQ---------------NIYN------------------C-----------D 154

Query: 384 YDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRG 443
           Y++PP RGQVCDVD+K + PCT+EN+++YHKS PC+FLKLNK+Y W+PE+YN + +LP  
Sbjct: 155 YNQPPPRGQVCDVDIKTWAPCTKENNYSYHKSSPCIFLKLNKIYDWMPEFYNTSTDLPHN 214

Query: 444 MPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSE 503
           MP  L+ YI  + +T P +LNT+WVSCEGENPAD EN+G + Y P +GF GYF+PY+NSE
Sbjct: 215 MPENLKTYIAEIEKTEPHKLNTIWVSCEGENPADQENVGSVNYLPVRGFPGYFYPYQNSE 274

Query: 504 GYLSPLVAINIPRPRTGILINIKCKAWAKNIKHLR-DGSGSVHFEIMVD 551
           GYLSPLVA++  RP+ GI+IN++CKAWA+NIKH R D  GSVH+E+++D
Sbjct: 275 GYLSPLVAVHFQRPKRGIIINVECKAWARNIKHDRKDRLGSVHYELLID 323

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17137214|ref|NP_477169.1| nervana 2, isoform A [Drosophila melanogaster] gi|24582331|ref|NP_723216.1| nervana 2, isoform D [Drosophila melanogaster] gi|62471617|ref|NP_001014476.1| nervana 2, isoform E [Drosophila melanogaster] gi|7297173|gb|AAF52439.1| nervana 2, isoform D [Drosophila melanogaster] gi|22945810|gb|AAF52438.2| nervana 2, isoform A [Drosophila melanogaster] gi|61678290|gb|AAX52660.1| nervana 2, isoform E [Drosophila melanogaster] gi|92109790|gb|ABE73219.1| IP16413p [Drosophila melanogaster]

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 172/334 (51%), Positives = 222/334 (66%), Gaps = 60/334 (17%)

Query: 219 CRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDV 278
            +IG+FY+ FY VLAA+  + MWAF QTLDPR P+W LD SLIGTNPG+GFRP+P   +V
Sbjct: 48  AKIGIFYVAFYGVLAALVAICMWAFFQTLDPRIPKWTLDRSLIGTNPGLGFRPLPPVDNV 107

Query: 279 GSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQVCDVD 338
            S+LIWYK +   NY++W DSL  FL VYK PGLTP               GRGQ     
Sbjct: 108 ESTLIWYKGTQHENYKHWTDSLDDFLAVYKVPGLTP---------------GRGQ----- 147

Query: 339 VKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDV 398
                     N +N                  C           DY++PP +GQVCDVD+
Sbjct: 148 ----------NIYN------------------C-----------DYNQPPPKGQVCDVDI 168

Query: 399 KLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIENVART 458
           K + PCT+EN+++YHKS PC+FLKLNK+YGWIPEYYN + +LP  MP  L+ YI  V +T
Sbjct: 169 KTWSPCTKENNYSYHKSAPCIFLKLNKIYGWIPEYYNRSNDLPANMPASLKTYIAEVEKT 228

Query: 459 NPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINIPRPR 518
            P++LNT+WVSCEGENPAD EN+G + Y P +GF GYF+PY+NSEGYLSPLVA++  RP+
Sbjct: 229 QPEKLNTIWVSCEGENPADQENIGAVNYLPIRGFPGYFYPYQNSEGYLSPLVAVHFQRPK 288

Query: 519 TGILINIKCKAWAKNIKHLR-DGSGSVHFEIMVD 551
            GI+IN++C+AWA+NI H R +  GSVH+E+++D
Sbjct: 289 RGIIINVECRAWARNIIHDRKERIGSVHYELLID 322

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	551
FB|FBgn0015777	323	nrv2 "nervana 2" [Drosophila m	0.306	0.523	0.617	3.7e-66
FB|FBgn0032946	311	nrv3 "nervana 3" [Drosophila m	0.321	0.569	0.513	6.1e-54
FB|FBgn0015776	309	nrv1 "nervana 1" [Drosophila m	0.299	0.533	0.427	4.4e-36
WB|WBGene00007646	320	nkb-1 [Caenorhabditis elegans	0.259	0.446	0.285	1.6e-16
WB|WBGene00010117	317	nkb-3 [Caenorhabditis elegans	0.259	0.451	0.302	5.8e-15
RGD|2171	290	Atp1b2 "ATPase, Na+/K+ transpo	0.246	0.468	0.270	3.2e-13
FB|FBgn0038690	377	CG11703 [Drosophila melanogast	0.254	0.371	0.294	2.1e-12
UNIPROTKB|P33879	280	ATP1B3 "Sodium/potassium-trans	0.241	0.475	0.300	7.6e-12
UNIPROTKB|Q3T0C6	279	ATP1B3 "Sodium/potassium-trans	0.308	0.609	0.305	1.1e-11
RGD|2172	279	Atp1b3 "ATPase, Na+/K+ transpo	0.241	0.476	0.296	1.7e-11

FB|FBgn0015777 nrv2 "nervana 2" [Drosophila melanogaster (taxid:7227)]

 Score = 646 (232.5 bits), Expect = 3.7e-66, Sum P(2) = 3.7e-66
 Identities = 105/170 (61%), Positives = 141/170 (82%)

Query:   383 DYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPR 442
             DY++PP +GQVCDVD+K + PCT+EN+++YHKS PC+FLKLNK+YGWIPEYYN + +LP 
Sbjct:   154 DYNQPPPKGQVCDVDIKTWSPCTKENNYSYHKSAPCIFLKLNKIYGWIPEYYNRSNDLPA 213

Query:   443 GMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENS 502
              MP  L+ YI  V +T P++LNT+WVSCEGENPAD EN+G + Y P +GF GYF+PY+NS
Sbjct:   214 NMPASLKTYIAEVEKTQPEKLNTIWVSCEGENPADQENIGAVNYLPIRGFPGYFYPYQNS 273

Query:   503 EGYLSPLVAINIPRPRTGILINIKCKAWAKNIKHLR-DGSGSVHFEIMVD 551
             EGYLSPLVA++  RP+ GI+IN++C+AWA+NI H R +  GSVH+E+++D
Sbjct:   274 EGYLSPLVAVHFQRPKRGIIINVECRAWARNIIHDRKERIGSVHYELLID 323

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=ISS;NAS;IMP

GO:0005890 "sodium:potassium-exchanging ATPase complex" evidence=IC;ISS

GO:0008324 "cation transmembrane transporter activity" evidence=IDA

GO:0006812 "cation transport" evidence=IDA

GO:0007424 "open tracheal system development" evidence=IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0005918 "septate junction" evidence=IDA

GO:0035158 "regulation of tube diameter, open tracheal system" evidence=IMP

GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP

GO:0019991 "septate junction assembly" evidence=IMP

GO:0006814 "sodium ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0060857 "establishment of glial blood-brain barrier" evidence=IMP

FB|FBgn0032946 nrv3 "nervana 3" [Drosophila melanogaster (taxid:7227)]

 Score = 530 (191.6 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
 Identities = 92/179 (51%), Positives = 123/179 (68%)

Query:   374 LRLDTRVLRDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEY 433
             L    +V   ++ PP   +VC +D   F PCT +N+F YH + PC+FLKLNK+Y WIPE 
Sbjct:   134 LEKQNQVNCSFEHPPQDDKVCGIDFSSFSPCTADNNFGYHVARPCIFLKLNKIYNWIPEI 193

Query:   434 YNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFA 493
             YND++ LP  MP +L+ +I+      P + N VWVSCEGENPAD+EN+    YYP+ GF 
Sbjct:   194 YNDSKTLPDHMPEELKQHIKEKQSLRPNETNVVWVSCEGENPADVENIKARDYYPRMGFP 253

Query:   494 GYFFPYENSEGYLSPLVAINIPRPRTGILINIKCKAWAKNIKHLR-DGSGSVHFEIMVD 551
              Y+FP++N +GY+ P+VA+      TG+LINI+CKAWA+NI H R D  GSVHFE+MVD
Sbjct:   254 RYYFPFKNIQGYIPPIVAVQFT-VETGVLINIECKAWARNINHDRSDRRGSVHFELMVD 311

GO:0005886 "plasma membrane" evidence=IDA;NAS

GO:0005890 "sodium:potassium-exchanging ATPase complex" evidence=IEA;NAS

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=NAS

GO:0006814 "sodium ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

FB|FBgn0015776 nrv1 "nervana 1" [Drosophila melanogaster (taxid:7227)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 80/187 (42%), Positives = 115/187 (61%)

Query:   381 LRDYDRPPGR-------GQV------CDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVY 427
             LRDY+   GR       GQV      C V+  LF  C++ N++ Y  + PC+FLKLNK++
Sbjct:   129 LRDYNHTEGRDMKHCGFGQVLEPTDVCVVNTDLFGGCSKANNYGYKTNQPCIFLKLNKIF 188

Query:   428 GWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYY 487
             GWIPE Y+  +   + MP  L+  I N  +T  +Q   VWVSC G    D EN  +I+Y+
Sbjct:   189 GWIPEVYDKEE---KDMPDDLKKVI-NETKTEERQ--QVWVSCNGHLGKDKENFQNIRYF 242

Query:   488 PKQGFAGYFFPYENSEGYLSPLVAINIPRPRTGILINIKCKAWAKNIKH---LRDGSGSV 544
             P QGF  Y++P+ N  GYLSPLVA+    P  G +++++C+AWAKNI++   +RD  GSV
Sbjct:   243 PSQGFPSYYYPFLNQPGYLSPLVAVQFNSPPKGQMLDVECRAWAKNIQYSGSVRDRKGSV 302

Query:   545 HFEIMVD 551
              F+I++D
Sbjct:   303 TFQILLD 309

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=ISS;NAS;IMP

GO:0008324 "cation transmembrane transporter activity" evidence=IDA

GO:0005890 "sodium:potassium-exchanging ATPase complex" evidence=IC;ISS;NAS

GO:0006812 "cation transport" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0006813 "potassium ion transport" evidence=IEA;NAS

GO:0006814 "sodium ion transport" evidence=IEA;NAS

GO:0005515 "protein binding" evidence=IPI

WB|WBGene00007646 nkb-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 224 (83.9 bits), Expect = 1.6e-16, P = 1.6e-16
 Identities = 46/161 (28%), Positives = 86/161 (53%)

Query:   394 CDVDVKLFDP-CTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYI 452
             C  D+ +FD  C+E++ F Y    PC+ + LN++ GW P  Y +       +P ++++  
Sbjct:   165 CRFDLSVFDKGCSEKSDFGYKSGKPCVIISLNRLIGWRPTDYQENS-----VPEEVKDRY 219

Query:   453 ENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAI 512
             +           ++ ++C G    D E++G + Y P  G  G ++PY  ++GY  P+  +
Sbjct:   220 K---------AGSIAINCRGATNVDQEHIGKVTYMPSNGIDGRYYPYVFTKGYQQPIAMV 270

Query:   513 NIPR-PRTGILINIKCKAWAKNIKH-LRDGSGSVHFEIMVD 551
                  PR  ++I ++C+A+A NI+H +    G V+FE+MV+
Sbjct:   271 KFDTIPRNKLVI-VECRAYALNIEHDISSRLGMVYFEVMVE 310

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

WB|WBGene00010117 nkb-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 212 (79.7 bits), Expect = 5.8e-15, P = 5.8e-15
 Identities = 49/162 (30%), Positives = 84/162 (51%)

Query:   394 CDVDVKLFDP--CTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNY 451
             C  D+ LF+   C  ++ + Y    PC+ + LN++ GW P  Y+D  ++P  + G     
Sbjct:   161 CRFDLGLFEKANCGAKDQYGYKSGKPCVAVSLNRLIGWRPVNYDDG-SVPEEIKG----- 214

Query:   452 IENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVA 511
                  R  P    ++ ++CEG    D E+LG +KY P+ G  G ++PY     Y  P+  
Sbjct:   215 -----RYKP---GSITINCEGATSFDKEHLGKVKYIPETGIDGRYYPYVFVPSYQQPIAM 266

Query:   512 INIPR-PRTGILINIKCKAWAKNIKH-LRDGSGSVHFEIMVD 551
             +     PR  ++I ++C+A+A NI+H +    G V+FE+ V+
Sbjct:   267 VKFDTIPRNKLVI-VECRAYASNIEHDISTRLGMVYFELFVE 307

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|2171 Atp1b2 "ATPase, Na+/K+ transporting, beta 2 polypeptide" [Rattus norvegicus (taxid:10116)]

 Score = 143 (55.4 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
 Identities = 42/155 (27%), Positives = 68/155 (43%)

Query:   223 VFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVGSSL 282
             +FYLVFY  L AM  + MW  LQT+   TP++   +  + T PG+  RP     DV  ++
Sbjct:    42 LFYLVFYGFLTAMFTLTMWVMLQTVSDHTPKY---QDRLAT-PGLMIRPKTENLDVIVNI 97

Query:   283 IWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRG------QVCD 336
                  SD  ++   +  L KFL+ Y    +   +        Y   P  G      + C 
Sbjct:    98 -----SDTESWDQHVQKLNKFLEPYN-DSIQAQKNDVCRPGRYYEQPDNGVLNYPKRACQ 151

Query:   337 VDVKLFDPCT---EENHFNYHKSGPCLFLKLNKTL 368
              +      C+   +  H+ Y    PC+F+K+N+ +
Sbjct:   152 FNRTQLGNCSGIGDPTHYGYSTGQPCVFIKMNRVI 186

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005890 "sodium:potassium-exchanging ATPase complex" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

FB|FBgn0038690 CG11703 [Drosophila melanogaster (taxid:7227)]

 Score = 167 (63.8 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
 Identities = 46/156 (29%), Positives = 74/156 (47%)

Query:   395 DVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIEN 454
             D  +  F    ++  + Y    P +F+KLNKV G++PE Y+   +LP+  P  L++ +  
Sbjct:   157 DNAIDFFADFNQDTTWGYATEKPTVFIKLNKVIGYVPETYDTPDDLPKEAPASLQDTVGK 216

Query:   455 VARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGYFFPYENSEGYLSPLVAINI 514
             +  T PK    +W++CE  N    E +    +YP      YF   EN  G ++ +VAI +
Sbjct:   217 LGNT-PK----IWITCEVTNGPKPEMV----FYP----GPYFEASENMRG-VTRVVAIQM 262

Query:   515 PRPRTGILINIKCKAWAKNIKHLRD--GSGSVHFEI 548
              +          CK WA+NI    D  G G + F +
Sbjct:   263 NKMPENAKTFFSCKVWARNIPIDDDYQGMGIIKFAL 298

GO:0005890 "sodium:potassium-exchanging ATPase complex" evidence=IEA;NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=NAS

GO:0006814 "sodium ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

UNIPROTKB|P33879 ATP1B3 "Sodium/potassium-transporting ATPase subunit beta-3" [Gallus gallus (taxid:9031)]

 Score = 153 (58.9 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
 Identities = 46/153 (30%), Positives = 72/153 (47%)

Query:   223 VFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVGSSL 282
             +FYLVFY  LAA+    MW  LQTL    P++  D     ++PG+   P P   D     
Sbjct:    41 LFYLVFYGFLAALFTFTMWVMLQTLSNDIPKYR-DRI---SSPGLMISPKP---DTALEF 93

Query:   283 IWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQV-----CDV 337
              ++  SD  +Y  ++ +L KFL+ Y        + QNI NC   +   +  V     C  
Sbjct:    94 -YFNKSDAQSYAEYVSTLRKFLETYD----DSKQSQNI-NCTPGKVFDQNDVAVKKACRF 147

Query:   338 DVKLFDPCT--EENHFNYHKSGPCLFLKLNKTL 368
             ++     C+  E+  F Y K  PC+ +K+N+ +
Sbjct:   148 NLSELGQCSGKEDKTFGYSKGTPCVLVKMNRII 180

GO:0005890 "sodium:potassium-exchanging ATPase complex" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q3T0C6 ATP1B3 "Sodium/potassium-transporting ATPase subunit beta-3" [Bos taurus (taxid:9913)]

 Score = 182 (69.1 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 63/206 (30%), Positives = 95/206 (46%)

Query:   223 VFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVES-DVGSS 281
             +FYLVFY  LAA+    MWA LQTL+   P++  D+     +PG+   P PV + D   S
Sbjct:    41 LFYLVFYGFLAALFSFTMWAMLQTLNDEVPKYR-DQI---PSPGLMVFPKPVSALDFSFS 96

Query:   282 LIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCD----YDRPPGRGQVCDV 337
             L     SD  +YQ +ID L KFL  Y   GL   +  N+ +C     +++       C  
Sbjct:    97 L-----SDAESYQGYIDDLKKFLKPY---GLEEQK--NLTDCTNGTFFEQKGPEYTACQF 146

Query:   338 DVKLFDPCT--EENHFNYHKSGPCLFLKLNKTL---------CACLGLRLDTRVLRDYDR 386
              + L + C+  ++  F Y +  PC+ +K+N+ +           C G    T  L  Y  
Sbjct:   147 PLALLEACSGVDDPTFGYQEGKPCILVKMNRIIGLKPQGEPRIECTGKSESTAFLSTY-- 204

Query:   387 PPGRGQVCDVDVKLFDPCTEENHFNY 412
              P  G +   D+K F    ++ H NY
Sbjct:   205 -PSNGTI---DLKYFPYYGKKLHGNY 226

GO:0042470 "melanosome" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0005890 "sodium:potassium-exchanging ATPase complex" evidence=IEA

RGD|2172 Atp1b3 "ATPase, Na+/K+ transporting, beta 3 polypeptide" [Rattus norvegicus (taxid:10116)]

 Score = 151 (58.2 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
 Identities = 45/152 (29%), Positives = 74/152 (48%)

Query:   223 VFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVGSSL 282
             +FYLVFY  LAA+    MW  LQTL+   P++  D+     +PG+   P P      ++L
Sbjct:    41 LFYLVFYGFLAALFTFTMWVMLQTLNDEVPKYR-DQI---PSPGLMVFPKPP-----TAL 91

Query:   283 IW-YKASDRSNYQYWIDSLIKFLDVY---KRPGLTPGRGQNIYNCDYDRPPGRGQVCDVD 338
              + Y  SD   Y+ +++ L  FL  Y   ++  LT   G  ++   +   P     C   
Sbjct:    92 DYTYSMSDPHTYKKFVEDLKNFLKPYSVEEQKNLTDCPGGALF---HQEGPDYS-ACQFP 147

Query:   339 VKLFDPCT--EENHFNYHKSGPCLFLKLNKTL 368
             V L   C+   +++F Y K  PC+ +K+N+ +
Sbjct:   148 VSLLQECSGVNDSNFGYSKGQPCVLVKMNRII 179

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=IC;IDA;TAS

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0005890 "sodium:potassium-exchanging ATPase complex" evidence=IDA

GO:0005901 "caveola" evidence=IDA

GO:0006813 "potassium ion transport" evidence=IDA

GO:0006814 "sodium ion transport" evidence=IDA

GO:0030001 "metal ion transport" evidence=IDA

GO:0042470 "melanosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q24048	ATPB2_DROME	No assigned EC number	0.5088	0.5045	0.8606	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	551
TIGR01107	289	TIGR01107, Na_K_ATPase_bet, Sodium Potassium ATPas	3e-22
pfam00287	289	pfam00287, Na_K-ATPase, Sodium / potassium ATPase	1e-20
pfam00287	289	pfam00287, Na_K-ATPase, Sodium / potassium ATPase	9e-20
pfam00287	289	pfam00287, Na_K-ATPase, Sodium / potassium ATPase	2e-06
TIGR01107	289	TIGR01107, Na_K_ATPase_bet, Sodium Potassium ATPas	4e-04

>gnl|CDD|162204 TIGR01107, Na_K_ATPase_bet, Sodium Potassium ATPase beta subunit

 Score = 97.0 bits (242), Expect = 3e-22
 Identities = 78/348 (22%), Positives = 132/348 (37%), Gaps = 115/348 (33%)

Query: 203 NSEKGQ------KSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLL 256
           N E  +       S F++L       +FYLVFY  LA +    +   LQT+   TP++  
Sbjct: 22  NPETKEFLGRTGGSWFKIL-------LFYLVFYGCLAGIFIGTIQVMLQTISDFTPKY-- 72

Query: 257 DESLIGTNPGIGFRPIPVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGR 316
            +  + + PG+  RP   + +     I +  SD S+Y+ ++ +L KFL  Y     +   
Sbjct: 73  -QDRVAS-PGLTQRPKVQKLE-----ISFNVSDPSSYEGYVQNLHKFLKPYND---SAQE 122

Query: 317 GQNIYNCDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRL 376
            +N+++C      G                      Y + GP                  
Sbjct: 123 DKNLFDC----GDGAE--------------------YEQRGP------------------ 140

Query: 377 DTRVLRDYDRPPGRGQVCDVDVKLFDPCT--EENHFNYHKSGPCLFLKLNKVYGWIPEYY 434
                  ++ P G  + C         C+   +  F Y +  PC+ +K+N++ G+ P+  
Sbjct: 141 -------FNAPYGTKKACQFKRDWLGNCSGLNDPTFGYSEGKPCIIIKMNRIIGFKPK-- 191

Query: 435 NDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQG-FA 493
                +P                          V C G+   D EN+G+++YYP  G F 
Sbjct: 192 --NPGVPP-------------------------VDCTGKRDEDDENIGNVEYYPMNGGFP 224

Query: 494 GYFFPYENSE---GYLSPLVAI---NIPRPRTGILINIKCKAWAKNIK 535
             +FPY   +    YL PLVA+   N+        + I+CK + +NI 
Sbjct: 225 LQYFPYYGKKLQPNYLQPLVAVQFTNLTMNTE---VRIECKIYGENIA 269

This model describes the Na+/K+ ATPase beta subunit in eukaryotes. Na+/K+ ATPase(also called Sodium-Potassium pump) is intimately associated with the plasma membrane. It couples the energy released by the hydrolysis of ATP to extrude 3 Na+ ions, with the concomitant uptake of 2K+ ions, against their ionic gradients [Transport and binding proteins, Cations and iron carrying compounds]. Length = 289

>gnl|CDD|215838 pfam00287, Na_K-ATPase, Sodium / potassium ATPase beta chain

 Score = 92.1 bits (229), Expect = 1e-20
 Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 36/181 (19%)

Query: 203 NSEKGQ------KSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLL 256
           N E G+       S  ++L       +FY+VFY  LA +  + +W  LQTLD  TP++  
Sbjct: 23  NPETGEFLGRTGSSWAKIL-------LFYVVFYGFLAGIFTLTIWVMLQTLDDYTPKY-Q 74

Query: 257 DESLIGTNPGIGFRPIPVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGR 316
           D      +PG+  RP           I +  SD  ++Q ++ +L +FL+ Y        +
Sbjct: 75  DR---VASPGLMIRPKV----YKGLEISFNVSDPKSWQEYVHTLNEFLEPYN----DSKQ 123

Query: 317 GQNIYNCD----YDRPP-----GRGQVCDVDVKLFDPCT--EENHFNYHKSGPCLFLKLN 365
             N  NC     +D+ P     G  + C  + +    C+   +  F Y +  PC+ +K+N
Sbjct: 124 SGNFENCTPGKYFDQGPFGAPNGEKKACQFNREWLGNCSGLNDPTFGYSEGKPCVLIKMN 183

Query: 366 K 366
           +
Sbjct: 184 R 184

Length = 289

>gnl|CDD|215838 pfam00287, Na_K-ATPase, Sodium / potassium ATPase beta chain

 Score = 89.4 bits (222), Expect = 9e-20
 Identities = 39/174 (22%), Positives = 73/174 (41%), Gaps = 33/174 (18%)

Query: 383 DYDRPPGRGQVCDVDVKLFDPCT--EENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNL 440
            +  P G  + C  + +    C+   +  F Y +  PC+ +K+N++ G+ PE   +  + 
Sbjct: 140 PFGAPNGEKKACQFNREWLGNCSGLNDPTFGYSEGKPCVLIKMNRIIGFKPEPPKNYNS- 198

Query: 441 PRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQG-FAGYFFPY 499
                                      + C G+   D + +G+I+Y+P  G F   ++PY
Sbjct: 199 -----------------------TAPPIHCTGKRAEDKDRIGNIEYFPMGGGFDLMYYPY 235

Query: 500 ENSE---GYLSPLVAINIPRPRTGILINIKCKAWAKNIKHLRDGS---GSVHFE 547
              +    YL PLVA+        + + ++CK +A+NIK+        G V F+
Sbjct: 236 YGKKLQPNYLQPLVAVKFTNLTRNVEVRVECKIYAENIKNDDPRDRFLGRVEFK 289

Length = 289

>gnl|CDD|215838 pfam00287, Na_K-ATPase, Sodium / potassium ATPase beta chain

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 94  NTVWVSCEGENPADIENLGDIKYYPKQG-FAGYFFPYENSE---GYLSPLVAINI 144
               + C G+   D + +G+I+Y+P  G F   ++PY   +    YL PLVA+  
Sbjct: 199 TAPPIHCTGKRAEDKDRIGNIEYFPMGGGFDLMYYPYYGKKLQPNYLQPLVAVKF 253

Length = 289

>gnl|CDD|162204 TIGR01107, Na_K_ATPase_bet, Sodium Potassium ATPase beta subunit

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 7/56 (12%)

Query: 98  VSCEGENPADIENLGDIKYYPKQG-FAGYFFPYENSE---GYLSPLVAI---NIPR 146
           V C G+   D EN+G+++YYP  G F   +FPY   +    YL PLVA+   N+  
Sbjct: 198 VDCTGKRDEDDENIGNVEYYPMNGGFPLQYFPYYGKKLQPNYLQPLVAVQFTNLTM 253

This model describes the Na+/K+ ATPase beta subunit in eukaryotes. Na+/K+ ATPase(also called Sodium-Potassium pump) is intimately associated with the plasma membrane. It couples the energy released by the hydrolysis of ATP to extrude 3 Na+ ions, with the concomitant uptake of 2K+ ions, against their ionic gradients [Transport and binding proteins, Cations and iron carrying compounds]. Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	551
TIGR01107	289	Na_K_ATPase_bet Sodium Potassium ATPase beta subun	100.0
PF00287	289	Na_K-ATPase: Sodium / potassium ATPase beta chain;	100.0
KOG3927|consensus	300		100.0
TIGR01107	289	Na_K_ATPase_bet Sodium Potassium ATPase beta subun	100.0
PF00287	289	Na_K-ATPase: Sodium / potassium ATPase beta chain;	99.97
KOG3927|consensus	300		99.95

>TIGR01107 Na_K_ATPase_bet Sodium Potassium ATPase beta subunit

Probab=100.00  E-value=2.1e-80  Score=626.31  Aligned_cols=263  Identities=29%  Similarity=0.565  Sum_probs=225.1

Q ss_pred             cccccccccCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCcccCCCCcceecCCC
Q psy17605        194 PSHIHKLRGNSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIP  273 (551)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~rt~~sW~~I~lFYliFY~~La~lFa~~m~v~l~TLd~~~P~~q~d~slig~~PGL~~rP~~  273 (551)
                      .....+...||++|++ +|||++||++|+|||||||+||||||++|||+||||||+++|+||++.    ++||||+||..
T Consensus        13 ~~~~k~fi~n~~~~e~-~GRT~~sW~kIllFYliFY~~La~~F~~~m~v~l~Tl~~~~Pk~q~~~----~~PGL~~rP~~   87 (289)
T TIGR01107        13 MGEWKKFIWNPETKEF-LGRTGGSWFKILLFYLVFYGCLAGIFIGTIQVMLQTISDFTPKYQDRV----ASPGLTQRPKV   87 (289)
T ss_pred             ccchhhheeCCCCCeE-eccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcCC----CCCceeeccCC
Confidence            4456788999999999 999999999999999999999999999999999999999999999764    59999999964


Q ss_pred             CCCCCcceEEEEEcCCCccHHHHHHHHHHhhHhcCCCCCCCCCCCCccCCCCC----CCCCCCcceeecccccCCccccC
Q psy17605        274 VESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYD----RPPGRGQVCDVDVKLFDPCTEEN  349 (551)
Q Consensus       274 ~~~~~~s~lI~fn~sd~~s~~~yv~~L~~FL~~Y~~~~~~~~~~~n~~~C~~~----~~~~~~~~C~F~~~~lg~csg~~  349 (551)
                           +.++|+|+++++++|++||++|++||++|+++.|   .+.+..+|..+    +.+                    
T Consensus        88 -----~~~eI~f~~~~~~s~~~yv~~l~~FL~~Y~~~~q---~~~~~~~C~~~~~~~~~~--------------------  139 (289)
T TIGR01107        88 -----QKLEISFNVSDPSSYEGYVQNLHKFLKPYNDSAQ---EDKNLFDCGDGAEYEQRG--------------------  139 (289)
T ss_pred             -----CceEEEEeCCChHHHHHHHHHHHHHHHhhchhhc---cccccccCCccccccccC--------------------
Confidence                 3678999999999999999999999999998755   23334688431    110                    


Q ss_pred             ccccCCCCCceeeccchhhhhhccccccccccccCCCCCCCCcccccCccccCCCCC--CCCCccCCCCcEEEEEeceee
Q psy17605        350 HFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVKLFDPCTE--ENHFNYHKSGPCLFLKLNKVY  427 (551)
Q Consensus       350 ~f~~~~g~pc~~~k~nr~~~~c~~~~~~~~~~~~~~~~~~~~~~C~f~~~~~~~Cs~--d~~fGY~~g~PCI~lKLNkI~  427 (551)
                                                       +.+.+.+..+||+|+++++++||.  |++|||++|+||||||||||+
T Consensus       140 ---------------------------------~~~~~~~~~~~C~F~~~~Lg~Cs~~~D~~fGY~~GkPCI~iKLNrIi  186 (289)
T TIGR01107       140 ---------------------------------PFNAPYGTKKACQFKRDWLGNCSGLNDPTFGYSEGKPCIIIKMNRII  186 (289)
T ss_pred             ---------------------------------CccccccccccceecHHhccCCCCCCCCCcCcCCCCCeEEEEeeeee
Confidence                                             111222333444444444447765  677999999999999999999


Q ss_pred             eeeeeccCCCCCCCCCCChhhHHHHhhhhccCCCCCCceEEeeecCCCCCCCCccceEEecCCC-CCCccccCCC---CC
Q psy17605        428 GWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQG-FAGYFFPYEN---SE  503 (551)
Q Consensus       428 Gw~P~~y~~~~~LP~~~P~~Lk~~I~~~~~~~~~~~n~IwVsC~g~~~~D~e~lg~I~Y~P~~G-Fp~~YFPY~n---q~  503 (551)
                      ||+|+.   .                          +.|||+|+|++++|.|++|+|+|||.+| ||++||||+|   |+
T Consensus       187 g~~P~~---~--------------------------~~i~v~C~~~~~~d~e~~g~i~YyP~~G~f~~~YfPY~gk~~q~  237 (289)
T TIGR01107       187 GFKPKN---P--------------------------GVPPVDCTGKRDEDDENIGNVEYYPMNGGFPLQYFPYYGKKLQP  237 (289)
T ss_pred             CcccCC---C--------------------------CCCceEecccCccccccccceEECCCCCCcCcccccccCcccCc
Confidence            999991   1                          1499999999999999999999999987 9999999999   99


Q ss_pred             CCCCCeEEEEcCCCCCCcEEEEEEEeecCCCccC--CCC-ceeEEEEEEeC
Q psy17605        504 GYLSPLVAINIPRPRTGILINIKCKAWAKNIKHL--RDG-SGSVHFEIMVD  551 (551)
Q Consensus       504 gYlsPLVAVqf~n~~~n~~I~IeCkawAkNI~~d--~d~-~G~V~FeL~Vd  551 (551)
                      +|+||||||||.|+++|++|+|||||||+||.++  +|+ .|||+|+|+||
T Consensus       238 ~YlqPLVAVqf~~~~~n~~v~VeCk~~a~NI~~~~~~d~~~G~v~f~l~i~  288 (289)
T TIGR01107       238 NYLQPLVAVQFTNLTMNTEVRIECKIYGENIAYSNEKDRFLGRVDFKITIK  288 (289)
T ss_pred             CCcCCeEEEEeecCCCCcEEEEEEEEeccCCccCCCccccCCeEEEEEEec
Confidence            9999999999999999999999999999999995  554 89999999997

This model describes the Na+/K+ ATPase beta subunit in eukaryotes. Na+/K+ ATPase(also called Sodium-Potassium pump) is intimately associated with the plasma membrane. It couples the energy released by the hydrolysis of ATP to extrude 3 Na+ ions, with the concomitant uptake of 2K+ ions, against their ionic gradients.

>PF00287 Na_K-ATPase: Sodium / potassium ATPase beta chain; InterPro: IPR000402 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=100.00  E-value=6.9e-79  Score=615.65  Aligned_cols=267  Identities=43%  Similarity=0.830  Sum_probs=163.8

Q ss_pred             cccccccccCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCcccCCCCcceecCCC
Q psy17605        194 PSHIHKLRGNSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIP  273 (551)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~rt~~sW~~I~lFYliFY~~La~lFa~~m~v~l~TLd~~~P~~q~d~slig~~PGL~~rP~~  273 (551)
                      -..+.+...|+++|+. +|||++||++|+|||||||++||||||+||||||||||+++|+||++    |++||||+||++
T Consensus        14 ~~~~~~fl~n~~~~~~-lGRT~~sW~~I~lFYlifY~~La~lfa~~m~v~l~tld~~~Pk~~~~----~~~PGL~~rP~~   88 (289)
T PF00287_consen   14 WESFKRFLWNPETGEF-LGRTGKSWGKILLFYLIFYAFLAALFAICMWVFLQTLDPDVPKYQDR----GSNPGLGFRPNP   88 (289)
T ss_dssp             --------------TT-S-SSSSTHHHHHHHHHTTHHHHHHHHHHHHHHHHHTSSSSS-S-STT----S-S--EEESS--
T ss_pred             cchheeeeEcCCCCeE-eccCcCccchhhhhHHHHHHHHHHHHHHHHHHHHHHCCCCCCceecc----cccceeeecCCC
Confidence            3456778899999999 99999999999999999999999999999999999999999999965    579999999999


Q ss_pred             CCCCCcceEEEEEcCCCccHHHHHHHHHHhhHhcCCCCCCCCCCCCccCCCCCCCCCCCcceeecccccCCccccCcccc
Q psy17605        274 VESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQVCDVDVKLFDPCTEENHFNY  353 (551)
Q Consensus       274 ~~~~~~s~lI~fn~sd~~s~~~yv~~L~~FL~~Y~~~~~~~~~~~n~~~C~~~~~~~~~~~C~F~~~~lg~csg~~~f~~  353 (551)
                      .+   ++++|+|+.+++++|++||++|++||++|++..+     ....+|+.++-.        ...             
T Consensus        89 ~~---~s~~I~f~~s~~~s~~~yv~~L~~FL~~Y~~~~~-----~~~~~C~~g~~~--------~~~-------------  139 (289)
T PF00287_consen   89 DT---ESTLISFNASDPSSYQPYVDRLDEFLKPYNDSSQ-----KNNENCDPGQYF--------EQP-------------  139 (289)
T ss_dssp             TT-----SEEEE-TT-SGGGHHHHHHHHHHHHCC-TTTS------SEE---S-S------------S-------------
T ss_pred             Cc---CcceEEEECCCchhHHHHHHHHHHHHHHhccccc-----cccccCCCccee--------ecC-------------
Confidence            62   7899999999999999999999999999999865     336778743210        000             


Q ss_pred             CCCCCceeeccchhhhhhccccccccccccCCCCCCCCcccccCccccCCCCC--CCCCccCCCCcEEEEEeceeeeeee
Q psy17605        354 HKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVKLFDPCTE--ENHFNYHKSGPCLFLKLNKVYGWIP  431 (551)
Q Consensus       354 ~~g~pc~~~k~nr~~~~c~~~~~~~~~~~~~~~~~~~~~~C~f~~~~~~~Cs~--d~~fGY~~g~PCI~lKLNkI~Gw~P  431 (551)
                                                   ++.+++..++||+|+++++++|+.  |+.|||++|+||||||||||+||+|
T Consensus       140 -----------------------------~~~~~~~~~~~C~F~~~~lg~Cs~~~d~~~GY~~g~PCI~lKlNri~gw~P  190 (289)
T PF00287_consen  140 -----------------------------DFGSPNPPKKACQFDRSWLGPCSGENDPTFGYSSGKPCIFLKLNRIIGWKP  190 (289)
T ss_dssp             -----------------------------SSSSSSSS--EE---GGGSTTS----SSS----SSS-EEEEEE---BT---
T ss_pred             -----------------------------ccccCCCCCcEeEEechhhccCCCCCCCCccccCCCceEEEEcccccCccc
Confidence                                         122334455555555555558875  5679999999999999999999999


Q ss_pred             eccCCCCCCCCCCChhhHHHHhhhhccCCCCCCceEEeeecCCCCCCCCccceEEecCC-CCCCccccCCC---CCCCCC
Q psy17605        432 EYYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQ-GFAGYFFPYEN---SEGYLS  507 (551)
Q Consensus       432 ~~y~~~~~LP~~~P~~Lk~~I~~~~~~~~~~~n~IwVsC~g~~~~D~e~lg~I~Y~P~~-GFp~~YFPY~n---q~gYls  507 (551)
                      ++..+                        .+.+.|||+|++++++|.|++|+|+|||.+ |||++||||+|   |++|+|
T Consensus       191 ~~~~~------------------------~~~~~i~v~C~~~~~~d~~~i~~i~y~P~~ggf~~~YfPy~~k~~~~~Y~~  246 (289)
T PF00287_consen  191 EPIDE------------------------YNSNKIWVSCEGENPEDKENIGPIEYYPSNGGFPLMYFPYYGKKAQPGYLS  246 (289)
T ss_dssp             S-TT--------------------------TTTEEEEEEESSSSS---S---EEEE-STSEEEGGG-SB-TTTTSTT---
T ss_pred             ccccc------------------------ccCCcceEEeeccccccccceeeEEEECCCCCcceeECCccCCccCCCCcC
Confidence            97211                        134689999999999999999999999999 89999999999   999999


Q ss_pred             CeEEEEcCCCCCCcEEEEEEEeecCCCccC--CCC-ceeEEEE
Q psy17605        508 PLVAINIPRPRTGILINIKCKAWAKNIKHL--RDG-SGSVHFE  547 (551)
Q Consensus       508 PLVAVqf~n~~~n~~I~IeCkawAkNI~~d--~d~-~G~V~Fe  547 (551)
                      |||||||.|+++|++|+|||||||+||++|  +|+ .|+|+||
T Consensus       247 PlVAVqf~n~~~n~~i~veCk~wakNI~~d~~~~~~~G~V~F~  289 (289)
T PF00287_consen  247 PLVAVQFTNPPRNVEINVECKAWAKNIPYDDERDKFLGRVHFK  289 (289)
T ss_dssp             --EEEEESSS-SSS-EEEEEEE-STT----SSS-TTSSB--EE
T ss_pred             CeEEEEEecCCCCcEEEEEEEEeCCCCCCCCcCCcccEEEEeC
Confidence            999999999999999999999999999998  454 9999997

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the beta subunit found in the P-type cation exchange ATPases located in the plasma membranes of animal cells. These P-ATPases include both H+/K+-ATPases (3.6.3.10 from EC) and Na+/K+-ATPases (3.6.3.9 from EC), which belong to the IIC subfamily of ATPases [, ]. These ATPases catalyse the hydrolysis of ATP coupled with the exchange of cations, pumping one cation out of the cell (H+ or Na+) in exchange for K+. These ATPases contain an alpha subunit (IPR005775 from INTERPRO) that is the catalytic component, and a glycosylated beta subunit that regulates the number of sodium pumps transported to the plasma membrane through the assembly of alpha/beta heterodimers. The beta subunit has three highly conserved disulphide bonds within the extracellular domain that stabilise the alpha subunit, the alpha/beta interaction, and the catalytic activity of the alpha subunit []. Different beta isoforms exist, permitting greater regulatory control. An example of a H+/K+-ATPase is the gastric pump responsible for acid secretion in the stomach, transporting protons from the cytoplasm of parietal cells to create a large pH gradient in exchange for the internalisation of potassium ions, using ATP hydrolysis to drive the pump []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0005391 sodium:potassium-exchanging ATPase activity, 0006754 ATP biosynthetic process, 0006813 potassium ion transport, 0006814 sodium ion transport, 0016020 membrane; PDB: 2XZB_B 3A3Y_B 3N2F_D 3B8E_D 3KDP_D 3N23_D.

>KOG3927|consensus

Probab=100.00  E-value=1.2e-74  Score=585.60  Aligned_cols=274  Identities=41%  Similarity=0.821  Sum_probs=251.9

Q ss_pred             CCcccccccccCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCcccCCCCcceecC
Q psy17605        192 SSPSHIHKLRGNSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRP  271 (551)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~rt~~sW~~I~lFYliFY~~La~lFa~~m~v~l~TLd~~~P~~q~d~slig~~PGL~~rP  271 (551)
                      ..|....+...|+++||. +|||++||++|+|||+|||++|||||++|||+||||||+++|+|+ ++   |++||||+||
T Consensus        19 ~~~~~~~~~~~n~~~~~~-~GRT~~sW~~IllfYivFY~~la~lf~~~~~~~~~tidp~~P~~~-~~---~~~PGl~~~P   93 (300)
T KOG3927|consen   19 EKPEEWKEFLYNPETGTF-LGRTGSSWAKILLFYIVFYGVLAALFAGCMWFMLQTIDPKVPKYK-DS---GANPGLSFRP   93 (300)
T ss_pred             ccchhhHHheeCcccCeE-ECcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-cc---CCCCceeecC
Confidence            346677888999999999 999999999999999999999999999999999999999999999 44   6899999999


Q ss_pred             CCCCCCCcceEEEEEcCCCccHHHHHHHHHHhhHhcCCCCCCCCCCCCccCCCCCCCCCCCcceeecccccCCccccCcc
Q psy17605        272 IPVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQVCDVDVKLFDPCTEENHF  351 (551)
Q Consensus       272 ~~~~~~~~s~lI~fn~sd~~s~~~yv~~L~~FL~~Y~~~~~~~~~~~n~~~C~~~~~~~~~~~C~F~~~~lg~csg~~~f  351 (551)
                      .+.+ . ++++|+|+.+|+++|++|+++|++||++|+..++.+..+.+..+|.+.++..+..+|+|+++.|++||     
T Consensus        94 ~~~~-~-~~~~i~~~~~~~~~~~~~~~~i~~fL~kY~d~~~~~~~~~~~~~~~~~q~~~~~~~ckfd~~~f~~cs-----  166 (300)
T KOG3927|consen   94 NPPR-T-DSTLISFNPSDPKSYANYVDRIDDFLKKYNDNGQEPRMGVNIDNCWFYQPGTPTVACKFDLDGFGNCS-----  166 (300)
T ss_pred             CCCc-C-cceeEEEeCCChhhHHHHHHHHHHHHHhhCcccccccccccCcccccccCCCCCceEEecHHHcCcCc-----
Confidence            9985 3 89999999999999999999999999999999888777788888988888888889999988888443     


Q ss_pred             ccCCCCCceeeccchhhhhhccccccccccccCCCCCCCCcccccCccccCCCCCCCCCccCCCCcEEEEEeceeeeeee
Q psy17605        352 NYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIP  431 (551)
Q Consensus       352 ~~~~g~pc~~~k~nr~~~~c~~~~~~~~~~~~~~~~~~~~~~C~f~~~~~~~Cs~d~~fGY~~g~PCI~lKLNkI~Gw~P  431 (551)
                                                                          |+.|++|||++|+||||||||||+||+|
T Consensus       167 ----------------------------------------------------~~~d~~~Gy~~g~Pci~iklNri~G~~P  194 (300)
T KOG3927|consen  167 ----------------------------------------------------GSNDDNFGYSKGQPCIFLKLNRILGWKP  194 (300)
T ss_pred             ----------------------------------------------------cccCCCccccCCCceEEEEeeeecCCcc
Confidence                                                                3588899999999999999999999999


Q ss_pred             eccCCCCCCCCCCChhhHHHHhhhhccCCCCCCceEEeeecCCCCCCCCccceEEecCCC-CCCccccCC---CCCCCCC
Q psy17605        432 EYYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQG-FAGYFFPYE---NSEGYLS  507 (551)
Q Consensus       432 ~~y~~~~~LP~~~P~~Lk~~I~~~~~~~~~~~n~IwVsC~g~~~~D~e~lg~I~Y~P~~G-Fp~~YFPY~---nq~gYls  507 (551)
                      +.|+...                      ++.+.|||||+|++++|.|++|.++|||.+| ||++||||+   +|++|+|
T Consensus       195 e~~~~~n----------------------~~~~~i~vsC~g~~~~D~e~i~~~~y~p~~g~f~~~Y~Py~gk~~~~~y~~  252 (300)
T KOG3927|consen  195 ELYNRPN----------------------KEPNVIWVSCEGKNPFDYENIGKVAYFPETGDFPLEYYPYYGKKNQPGYLQ  252 (300)
T ss_pred             ccCCCcC----------------------cccCceeEEecccCccchhcccceeeeccCCCCCceecCccccccCCCccC
Confidence            9886543                      1457999999999999999999999999999 999999999   8999999


Q ss_pred             CeEEEEcCCCCCCcEEEEEEEeecCCCccCC-CCceeEEEEEEeC
Q psy17605        508 PLVAINIPRPRTGILINIKCKAWAKNIKHLR-DGSGSVHFEIMVD  551 (551)
Q Consensus       508 PLVAVqf~n~~~n~~I~IeCkawAkNI~~d~-d~~G~V~FeL~Vd  551 (551)
                      |||||||.|+++|++|+|||||||+||.+++ .+.|+|+|+|+|+
T Consensus       253 plvavkf~ni~~n~~v~IeCka~a~n~~~~~~~~~g~V~f~l~i~  297 (300)
T KOG3927|consen  253 PLVAVKFTNIPRNEEVNIECKAWAENINHDRDTFGGRVRFELLIE  297 (300)
T ss_pred             ceEEEecCCCCCCceEEEEeecccccCcchhhhhcceEEEEEecc
Confidence            9999999999999999999999999999984 4689999999986

>TIGR01107 Na_K_ATPase_bet Sodium Potassium ATPase beta subunit

Probab=100.00  E-value=2.5e-33  Score=284.22  Aligned_cols=101  Identities=29%  Similarity=0.555  Sum_probs=94.7

Q ss_pred             cCccccCCC-cEEEEEcceeeeeeeccCCCCCCCCCCCChhHHHHHhhhcccCCCCCCCCcccccchhhhhccccceeee
Q psy17605          6 KDFFCYNFL-THYFLIVSQVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQVKPNADHLHLSSVYLANYTSYVTT   84 (551)
Q Consensus         6 ~~~~gy~~~-pc~flKlN~i~gw~P~~y~~~~~lp~~mP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (551)
                      |+.|||++| |||||||||||||+|+  +.+                                                 
T Consensus       166 D~~fGY~~GkPCI~iKLNrIig~~P~--~~~-------------------------------------------------  194 (289)
T TIGR01107       166 DPTFGYSEGKPCIIIKMNRIIGFKPK--NPG-------------------------------------------------  194 (289)
T ss_pred             CCCcCcCCCCCeEEEEeeeeeCcccC--CCC-------------------------------------------------
Confidence            457999999 9999999999999999  111                                                 


Q ss_pred             eeeeccCCCcceeEeeeecCCCCcCCCcceeeecCCC-CCCccccccC---CCCCCCceEEEEcCCCCCCceeeeeeceE
Q psy17605         85 FKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQG-FAGYFFPYEN---SEGYLSPLVAINIPRPRTGISLELIRFPE  160 (551)
Q Consensus        85 ~~~~~~~~~~~IwVsC~~~~~~D~e~ig~i~YyP~~G-fp~~YFPY~n---qpgYlsPLVAVqF~n~~~~~~i~~~~~~~  160 (551)
                                .|||+|++++++|.|++|+|+|||.+| ||++||||+|   |++|+||||||||.++++|++|+    ||
T Consensus       195 ----------~i~v~C~~~~~~d~e~~g~i~YyP~~G~f~~~YfPY~gk~~q~~YlqPLVAVqf~~~~~n~~v~----Ve  260 (289)
T TIGR01107       195 ----------VPPVDCTGKRDEDDENIGNVEYYPMNGGFPLQYFPYYGKKLQPNYLQPLVAVQFTNLTMNTEVR----IE  260 (289)
T ss_pred             ----------CCceEecccCccccccccceEECCCCCCcCcccccccCcccCcCCcCCeEEEEeecCCCCcEEE----EE
Confidence                      499999999999999999999999998 9999999999   99999999999999999999999    99


Q ss_pred             EEeeccccccC
Q psy17605        161 LFMYAVRISVA  171 (551)
Q Consensus       161 c~~~A~NI~~d  171 (551)
                      |++||+||.++
T Consensus       261 Ck~~a~NI~~~  271 (289)
T TIGR01107       261 CKIYGENIAYS  271 (289)
T ss_pred             EEEeccCCccC
Confidence            99999999995

This model describes the Na+/K+ ATPase beta subunit in eukaryotes. Na+/K+ ATPase(also called Sodium-Potassium pump) is intimately associated with the plasma membrane. It couples the energy released by the hydrolysis of ATP to extrude 3 Na+ ions, with the concomitant uptake of 2K+ ions, against their ionic gradients.

>PF00287 Na_K-ATPase: Sodium / potassium ATPase beta chain; InterPro: IPR000402 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.97  E-value=5.9e-32  Score=274.27  Aligned_cols=107  Identities=40%  Similarity=0.784  Sum_probs=65.5

Q ss_pred             cCccccCCC-cEEEEEcceeeeeeeccCCCCCCCCCCCChhHHHHHhhhcccCCCCCCCCcccccchhhhhccccceeee
Q psy17605          6 KDFFCYNFL-THYFLIVSQVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQVKPNADHLHLSSVYLANYTSYVTT   84 (551)
Q Consensus         6 ~~~~gy~~~-pc~flKlN~i~gw~P~~y~~~~~lp~~mP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (551)
                      |+.|||+.| ||||||||||+||+|++.++.                                                 
T Consensus       166 d~~~GY~~g~PCI~lKlNri~gw~P~~~~~~-------------------------------------------------  196 (289)
T PF00287_consen  166 DPTFGYSSGKPCIFLKLNRIIGWKPEPIDEY-------------------------------------------------  196 (289)
T ss_dssp             SSS----SSS-EEEEEE---BT---S-TT---------------------------------------------------
T ss_pred             CCCccccCCCceEEEEcccccCccccccccc-------------------------------------------------
Confidence            357999999 999999999999999962111                                                 


Q ss_pred             eeeeccCCCcceeEeeeecCCCCcCCCcceeeecCC-CCCCccccccC---CCCCCCceEEEEcCCCCCCceeeeeeceE
Q psy17605         85 FKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQ-GFAGYFFPYEN---SEGYLSPLVAINIPRPRTGISLELIRFPE  160 (551)
Q Consensus        85 ~~~~~~~~~~~IwVsC~~~~~~D~e~ig~i~YyP~~-Gfp~~YFPY~n---qpgYlsPLVAVqF~n~~~~~~i~~~~~~~  160 (551)
                             +.+.|||+|++++++|.+++|.|+|||.+ |||.+||||+|   |++|+||||||||.|++.|++|+    ||
T Consensus       197 -------~~~~i~v~C~~~~~~d~~~i~~i~y~P~~ggf~~~YfPy~~k~~~~~Y~~PlVAVqf~n~~~n~~i~----ve  265 (289)
T PF00287_consen  197 -------NSNKIWVSCEGENPEDKENIGPIEYYPSNGGFPLMYFPYYGKKAQPGYLSPLVAVQFTNPPRNVEIN----VE  265 (289)
T ss_dssp             -------TTTEEEEEEESSSSS---S---EEEE-STSEEEGGG-SB-TTTTSTT-----EEEEESSS-SSS-EE----EE
T ss_pred             -------cCCcceEEeeccccccccceeeEEEECCCCCcceeECCccCCccCCCCcCCeEEEEEecCCCCcEEE----EE
Confidence                   23589999999999999999999999999 59999999999   99999999999999999999999    99


Q ss_pred             EEeeccccccCC
Q psy17605        161 LFMYAVRISVAR  172 (551)
Q Consensus       161 c~~~A~NI~~d~  172 (551)
                      |++||+||.+|+
T Consensus       266 Ck~wakNI~~d~  277 (289)
T PF00287_consen  266 CKAWAKNIPYDD  277 (289)
T ss_dssp             EEE-STT----S
T ss_pred             EEEeCCCCCCCC
Confidence            999999999987

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the beta subunit found in the P-type cation exchange ATPases located in the plasma membranes of animal cells. These P-ATPases include both H+/K+-ATPases (3.6.3.10 from EC) and Na+/K+-ATPases (3.6.3.9 from EC), which belong to the IIC subfamily of ATPases [, ]. These ATPases catalyse the hydrolysis of ATP coupled with the exchange of cations, pumping one cation out of the cell (H+ or Na+) in exchange for K+. These ATPases contain an alpha subunit (IPR005775 from INTERPRO) that is the catalytic component, and a glycosylated beta subunit that regulates the number of sodium pumps transported to the plasma membrane through the assembly of alpha/beta heterodimers. The beta subunit has three highly conserved disulphide bonds within the extracellular domain that stabilise the alpha subunit, the alpha/beta interaction, and the catalytic activity of the alpha subunit []. Different beta isoforms exist, permitting greater regulatory control. An example of a H+/K+-ATPase is the gastric pump responsible for acid secretion in the stomach, transporting protons from the cytoplasm of parietal cells to create a large pH gradient in exchange for the internalisation of potassium ions, using ATP hydrolysis to drive the pump []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0005391 sodium:potassium-exchanging ATPase activity, 0006754 ATP biosynthetic process, 0006813 potassium ion transport, 0006814 sodium ion transport, 0016020 membrane; PDB: 2XZB_B 3A3Y_B 3N2F_D 3B8E_D 3KDP_D 3N23_D.

>KOG3927|consensus

Probab=99.95  E-value=1.4e-28  Score=250.32  Aligned_cols=109  Identities=39%  Similarity=0.755  Sum_probs=100.7

Q ss_pred             cCccccCCC-cEEEEEcceeeeeeeccCCCCCCCCCCCChhHHHHHhhhcccCCCCCCCCcccccchhhhhccccceeee
Q psy17605          6 KDFFCYNFL-THYFLIVSQVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQVKPNADHLHLSSVYLANYTSYVTT   84 (551)
Q Consensus         6 ~~~~gy~~~-pc~flKlN~i~gw~P~~y~~~~~lp~~mP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (551)
                      |++|||..+ ||||||||||+||+||.|+....                                               
T Consensus       170 d~~~Gy~~g~Pci~iklNri~G~~Pe~~~~~n~-----------------------------------------------  202 (300)
T KOG3927|consen  170 DDNFGYSKGQPCIFLKLNRILGWKPELYNRPNK-----------------------------------------------  202 (300)
T ss_pred             CCCccccCCCceEEEEeeeecCCccccCCCcCc-----------------------------------------------
Confidence            577999999 99999999999999999977521                                               


Q ss_pred             eeeeccCCCcceeEeeeecCCCCcCCCcceeeecCCC-CCCcccccc---CCCCCCCceEEEEcCCCCCCceeeeeeceE
Q psy17605         85 FKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQG-FAGYFFPYE---NSEGYLSPLVAINIPRPRTGISLELIRFPE  160 (551)
Q Consensus        85 ~~~~~~~~~~~IwVsC~~~~~~D~e~ig~i~YyP~~G-fp~~YFPY~---nqpgYlsPLVAVqF~n~~~~~~i~~~~~~~  160 (551)
                             +.+++||||++++++|.|+++.++|+|.+| ||++||||+   +|++|+||||||||+|+++|++|+    ||
T Consensus       203 -------~~~~i~vsC~g~~~~D~e~i~~~~y~p~~g~f~~~Y~Py~gk~~~~~y~~plvavkf~ni~~n~~v~----Ie  271 (300)
T KOG3927|consen  203 -------EPNVIWVSCEGKNPFDYENIGKVAYFPETGDFPLEYYPYYGKKNQPGYLQPLVAVKFTNIPRNEEVN----IE  271 (300)
T ss_pred             -------ccCceeEEecccCccchhcccceeeeccCCCCCceecCccccccCCCccCceEEEecCCCCCCceEE----EE
Confidence                   346899999999999999999999999999 999999999   699999999999999999999999    99


Q ss_pred             EEeeccccccCC
Q psy17605        161 LFMYAVRISVAR  172 (551)
Q Consensus       161 c~~~A~NI~~d~  172 (551)
                      |++||+||..+.
T Consensus       272 Cka~a~n~~~~~  283 (300)
T KOG3927|consen  272 CKAWAENINHDR  283 (300)
T ss_pred             eecccccCcchh
Confidence            999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	551
3a3y_B	305	Crystal Structure Of The Sodium-potassium Pump With		1e-13
2zxe_B	305	Crystal Structure Of The Sodium - Potassium Pump In		1e-13
3n23_B	277	Crystal Structure Of The High Affinity Complex Betw		6e-09
3kdp_B	286	Crystal Structure Of The Sodium-potassium Pump Leng		9e-09
3ixz_B	290	Pig Gastric H+K+-Atpase Complexed With Aluminium Fl		4e-06

>pdb|3A3Y|B Chain B, Crystal Structure Of The Sodium-potassium Pump With Bound Potassium And Ouabain Length = 305

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/343 (20%), Positives = 137/343 (39%), Gaps = 86/343 (25%)
Query: 220 RIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVG 279
           +I +FYL+FY  LA +    +   L TL    P++   +  +   PG+   P  +++++ 
Sbjct: 35  KIFLFYLIFYGCLAGIFIGTIQVLLLTLSDFEPKY---QDRVAP-PGLSHAPYAIKTEIS 90
Query: 280 SSLIWYKASDRSNYQYWIDSLIKFLDVY---KRPGLTPGRGQNIYNCDYDRPPGRGQVCD 336
            S+     S+  +Y+ ++ S+ K +D+Y    + G +P                      
Sbjct: 91  FSI-----SNPKSYESFVKSMHKLMDLYNESSQAGNSP---------------------- 123
Query: 337 VDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDV 396
                F+ C++    +Y K G                         D D   G+ + C  
Sbjct: 124 -----FEDCSD-TPADYIKRG-------------------------DLDDSQGQKKACRF 152
Query: 397 DVKLFDPCT--EENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIEN 454
                  C+  ++  + Y +  PC+  KLN++ G+ P+   +T +LP  +      Y+  
Sbjct: 153 SRMWLKNCSGLDDTTYGYAEGKPCVVAKLNRIIGFYPKPLKNTTDLPEQLQANYNQYV-- 210
Query: 455 VARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGY---FFPYEN---SEGYLSP 508
                      + + C  +   D E +G I+Y+   G+AG+   ++PY      + YL P
Sbjct: 211 -----------LPLRCAAKREEDREKIGSIEYFGLGGYAGFPLQYYPYYGKRLQKKYLQP 259
Query: 509 LVAINIPRPRTGILINIKCKAWAKNIKHLRDGSGSVHFEIMVD 551
           L+AI        + + I+CK + +NI +         FE+ ++
Sbjct: 260 LLAIQFTNLTQNMELRIECKVYGENIDYSEKDRFRGRFEVKIE 302

>pdb|2ZXE|B Chain B, Crystal Structure Of The Sodium - Potassium Pump In The E2.2k+.Pi State Length = 305

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/343 (20%), Positives = 137/343 (39%), Gaps = 86/343 (25%)
Query: 220 RIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVG 279
           +I +FYL+FY  LA +    +   L TL    P++   +  +   PG+   P  +++++ 
Sbjct: 35  KIFLFYLIFYGCLAGIFIGTIQVLLLTLSDFEPKY---QDRVAP-PGLSHAPYAIKTEIS 90
Query: 280 SSLIWYKASDRSNYQYWIDSLIKFLDVY---KRPGLTPGRGQNIYNCDYDRPPGRGQVCD 336
            S+     S+  +Y+ ++ S+ K +D+Y    + G +P                      
Sbjct: 91  FSI-----SNPKSYESFVKSMHKLMDLYNESSQAGNSP---------------------- 123
Query: 337 VDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDV 396
                F+ C++    +Y K G                         D D   G+ + C  
Sbjct: 124 -----FEDCSD-TPADYIKRG-------------------------DLDDSQGQKKACRF 152
Query: 397 DVKLFDPCT--EENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIEN 454
                  C+  ++  + Y +  PC+  KLN++ G+ P+   +T +LP  +      Y+  
Sbjct: 153 SRMWLKNCSGLDDTTYGYAEGKPCVVAKLNRIIGFYPKPLKNTTDLPEELQANYNQYV-- 210
Query: 455 VARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGY---FFPYEN---SEGYLSP 508
                      + + C  +   D E +G I+Y+   G+AG+   ++PY      + YL P
Sbjct: 211 -----------LPLRCAAKREEDREKIGSIEYFGLGGYAGFPLQYYPYYGKRLQKKYLQP 259
Query: 509 LVAINIPRPRTGILINIKCKAWAKNIKHLRDGSGSVHFEIMVD 551
           L+AI        + + I+CK + +NI +         FE+ ++
Sbjct: 260 LLAIQFTNLTQNMELRIECKVYGENIDYSEKDRFRGRFEVKIE 302

>pdb|3N23|B Chain B, Crystal Structure Of The High Affinity Complex Between Ouabain And The E2p Form Of The Sodium-Potassium Pump Length = 277

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/340 (20%), Positives = 133/340 (39%), Gaps = 81/340 (23%)
Query: 220 RIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVG 279
           +I +FY++FY  LA +    +   L T+    P +   +  +   PG+   P   ++++ 
Sbjct: 8   KILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTY---QDRVAP-PGLTQIPQSQKTEIS 63
Query: 280 SSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQVCDVDV 339
                ++ +D  +Y+ ++ S+++FL+ YK                         +   D 
Sbjct: 64  -----FRPNDPQSYESYVVSIVRFLEKYK------------------------DLAQKDD 94
Query: 340 KLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVK 399
            +F+ C                            +  + +   +Y+   G  +VC   ++
Sbjct: 95  MIFEDCG--------------------------NVPSELKERGEYNNERGERKVCRFRLE 128
Query: 400 LFDPCTEENH--FNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIENVAR 457
               C+  N   + Y    PC+ +KLN+V G+ P+   +           L  Y   V +
Sbjct: 129 WLGNCSGLNDETYGYKDGKPCVIIKLNRVLGFKPKPPKNES---------LETY--PVMK 177
Query: 458 TNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGY---FFPYEN---SEGYLSPLVA 511
            NP  L    V C G+   D E +G ++Y+   G+ G+   ++PY        YL PL+A
Sbjct: 178 YNPYVLP---VHCTGKRDEDKEKVGTMEYFGLGGYPGFPLQYYPYYGKLLQPKYLQPLMA 234
Query: 512 INIPRPRTGILINIKCKAWAKNIKHLRDGSGSVHFEIMVD 551
           +          I I+CKA+ +NI +         F++ ++
Sbjct: 235 VQFTNLTMDTEIRIECKAYGENIGYSEKDRFQGRFDVKIE 274

>pdb|3KDP|B Chain B, Crystal Structure Of The Sodium-potassium Pump Length = 286

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 69/340 (20%), Positives = 133/340 (39%), Gaps = 81/340 (23%)
Query: 220 RIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVG 279
           +I +FY++FY  LA +    +   L T+    P +   +  +   PG+   P   +++  
Sbjct: 17  KILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTY---QDRVAP-PGLTQIPQSQKTE-- 70
Query: 280 SSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQVCDVDV 339
              I ++ +D  +Y+ ++ S+++FL+ YK                         +   D 
Sbjct: 71  ---ISFRPNDPQSYESYVVSIVRFLEKYK------------------------DLAQKDD 103
Query: 340 KLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVK 399
            +F+ C                            +  + +   +Y+   G  +VC   ++
Sbjct: 104 MIFEDCG--------------------------NVPSELKERGEYNNERGERKVCRSRLE 137
Query: 400 LFDPCTEENH--FNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIENVAR 457
               C+  N   + Y    PC+ +KLN+V G+ P+   +           L  Y   V +
Sbjct: 138 WLGNCSGLNDETYGYKDGKPCVIIKLNRVLGFKPKPPKNES---------LETY--PVMK 186
Query: 458 TNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGY---FFPYEN---SEGYLSPLVA 511
            NP  L    V C G+   D E +G ++Y+   G+ G+   ++PY        YL PL+A
Sbjct: 187 YNPYVLP---VHCTGKRDEDKEKVGTMEYFGLGGYPGFPLQYYPYYGKLLQPKYLQPLMA 243
Query: 512 INIPRPRTGILINIKCKAWAKNIKHLRDGSGSVHFEIMVD 551
           +          I I+CKA+ +NI +         F++ ++
Sbjct: 244 VQFTNLTMDTEIRIECKAYGENIGYSEKDRFQGRFDVKIE 283

>pdb|3IXZ|B Chain B, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride Length = 290

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 137/340 (40%), Gaps = 101/340 (29%)
Query: 203 NSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIG 262
           N + GQ  + + L +   I ++Y+ FY V++ +  + ++  ++T+DP TP +   + L  
Sbjct: 23  NPDTGQM-LGRTLSRWVWISLYYVAFYVVMSGIFALCIYVLMRTIDPYTPDY--QDQL-- 77
Query: 263 TNPGIGFRPIPVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYN 322
            +PG+  RP  V  + G   I Y  SD + +     +L +FL      G +P   +   N
Sbjct: 78  KSPGVTLRP-DVYGEKGLD-ISYNVSDSTTWAGLAHTLHRFL-----AGYSPAAQEGSIN 130
Query: 323 CDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLR 382
                                 CT E +F + +S    FL  N T  +C   +    +L+
Sbjct: 131 ----------------------CTSEKYF-FQES----FLAPNHTKFSC---KFTADMLQ 160
Query: 383 DYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPR 442
           +    P             DP      F + +  PC  +K+N++  ++P         PR
Sbjct: 161 NCSGRP-------------DPT-----FGFAEGKPCFIIKMNRIVKFLP----GNSTAPR 198
Query: 443 GMPGQLRNYIENVARTNPKQLNTVWVSCEG-ENPADIENLGDIKYYPKQG-FAGYFFPYE 500
                                    V C   + P D   L  ++Y+P  G ++ ++FPY 
Sbjct: 199 -------------------------VDCAFLDQPRDGPPL-QVEYFPANGTYSLHYFPYY 232
Query: 501 NSEG---YLSPLVA---INIPRPRTGILINIKCKAWAKNI 534
             +    Y +PLVA   +N+PR R  +++   CK  A+++
Sbjct: 233 GKKAQPHYSNPLVAAKLLNVPRNRDVVIV---CKILAEHV 269

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	551
2zxe_B	305	Na+,K+-ATPase beta subunit; membrane protein, ION	4e-69
2zxe_B	305	Na+,K+-ATPase beta subunit; membrane protein, ION	3e-14
3kdp_B	286	Sodium/potassium-transporting ATPase subunit beta;	6e-67
3kdp_B	286	Sodium/potassium-transporting ATPase subunit beta;	5e-14
3ixz_B	290	Potassium-transporting ATPase subunit beta; ION pu	3e-66
3ixz_B	290	Potassium-transporting ATPase subunit beta; ION pu	5e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B* Length = 305

 Score =  224 bits (571), Expect = 4e-69
 Identities = 68/357 (19%), Positives = 133/357 (37%), Gaps = 81/357 (22%)

Query: 203 NSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIG 262
           +SEK +  + +      +I +FYL+FY  LA +    +   L TL    P++    +   
Sbjct: 19  DSEKKE-FLGRTGSSWFKIFLFYLIFYGCLAGIFIGTIQVLLLTLSDFEPKYQDRVA--- 74

Query: 263 TNPGIGFRPIPVESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYN 322
             PG+   P  ++++     I +  S+  +Y+ ++ S+ K +D+Y              +
Sbjct: 75  -PPGLSHAPYAIKTE-----ISFSISNPKSYESFVKSMHKLMDLYNESSQAGNSPFE--D 126

Query: 323 CDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLR 382
           C                      T  ++                                
Sbjct: 127 CS--------------------DTPADYIKRG---------------------------- 138

Query: 383 DYDRPPGRGQVCDVDVKLFDPCT--EENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNL 440
           D D   G+ + C         C+  ++  + Y +  PC+  KLN++ G+ P+   +T +L
Sbjct: 139 DLDDSQGQKKACRFSRMWLKNCSGLDDTTYGYAEGKPCVVAKLNRIIGFYPKPLKNTTDL 198

Query: 441 PRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAG---YFF 497
           P  +      Y+             + + C  +   D E +G I+Y+   G+AG    ++
Sbjct: 199 PEELQANYNQYV-------------LPLRCAAKREEDREKIGSIEYFGLGGYAGFPLQYY 245

Query: 498 PYENS---EGYLSPLVAINIPRPRTGILINIKCKAWAKNIKHLRDGSGSVHFEIMVD 551
           PY      + YL PL+AI        + + I+CK + +NI +         FE+ ++
Sbjct: 246 PYYGKRLQKKYLQPLLAIQFTNLTQNMELRIECKVYGENIDYSEKDRFRGRFEVKIE 302

>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B* Length = 305

 Score = 72.8 bits (178), Expect = 3e-14
 Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 51/140 (36%)

Query: 18  FLIVSQVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQVKPNADHLHLSSVYLAN 77
              ++++ G+ P+   +T +LP  +      Y+                           
Sbjct: 178 VAKLNRIIGFYPKPLKNTTDLPEELQANYNQYV--------------------------- 210

Query: 78  YTSYVTTFKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQGFAG---YFFPYENS-- 132
                             + + C  +   D E +G I+Y+   G+AG    ++PY     
Sbjct: 211 ------------------LPLRCAAKREEDREKIGSIEYFGLGGYAGFPLQYYPYYGKRL 252

Query: 133 -EGYLSPLVAINIPRPRTGI 151
            + YL PL+AI        +
Sbjct: 253 QKKYLQPLLAIQFTNLTQNM 272

>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B* Length = 286

 Score =  217 bits (554), Expect = 6e-67
 Identities = 64/343 (18%), Positives = 124/343 (36%), Gaps = 83/343 (24%)

Query: 219 CRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDV 278
            +I +FY++FY  LA +    +   L T+    P +    +     PG+   P   +++ 
Sbjct: 16  FKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDRVA----PPGLTQIPQSQKTE- 70

Query: 279 GSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQVCDVD 338
               I ++ +D  +Y+ ++ S+++FL+ YK       +  ++   D    P   +     
Sbjct: 71  ----ISFRPNDPQSYESYVVSIVRFLEKYK----DLAQKDDMIFEDCGNVPSELKERG-- 120

Query: 339 VKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDV 398
                                                       +Y+   G  +VC   +
Sbjct: 121 --------------------------------------------EYNNERGERKVCRSRL 136

Query: 399 KLFDPCT--EENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIENVA 456
           +    C+   +  + Y    PC+ +KLN+V G+ P+   +                    
Sbjct: 137 EWLGNCSGLNDETYGYKDGKPCVIIKLNRVLGFKPKPPKNESLET--------------Y 182

Query: 457 RTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQGFAGY---FFPYENS---EGYLSPLV 510
                    + V C G+   D E +G ++Y+   G+ G+   ++PY        YL PL+
Sbjct: 183 PVMKYNPYVLPVHCTGKRDEDKEKVGTMEYFGLGGYPGFPLQYYPYYGKLLQPKYLQPLM 242

Query: 511 AINIPRPRTGILINIKCKAWAKNIKH-LRD-GSGSVHFEIMVD 551
           A+          I I+CKA+ +NI +  +D   G    +I V 
Sbjct: 243 AVQFTNLTMDTEIRIECKAYGENIGYSEKDRFQGRFDVKIEVK 285

>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B* Length = 286

 Score = 71.7 bits (175), Expect = 5e-14
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 94  NTVWVSCEGENPADIENLGDIKYYPKQGFAGY---FFPYENS---EGYLSPLVAINIPRP 147
             + V C G+   D E +G ++Y+   G+ G+   ++PY        YL PL+A+     
Sbjct: 190 YVLPVHCTGKRDEDKEKVGTMEYFGLGGYPGFPLQYYPYYGKLLQPKYLQPLMAVQFTNL 249

Query: 148 RTGI 151
               
Sbjct: 250 TMDT 253

>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_B Length = 290

 Score =  216 bits (550), Expect = 3e-66
 Identities = 51/344 (14%), Positives = 102/344 (29%), Gaps = 103/344 (29%)

Query: 219 CRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDV 278
             I ++Y+ FY V++ +  + ++  ++T+DP TP +         +PG+  RP       
Sbjct: 38  VWISLYYVAFYVVMSGIFALCIYVLMRTIDPYTPDYQDQLK----SPGVTLRPDVYGEK- 92

Query: 279 GSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPG----LTPGRGQNIYNCDYDRPPGRGQV 334
               I Y  SD + +     +L +FL  Y        +     +  +   +  P      
Sbjct: 93  -GLDISYNVSDSTTWAGLAHTLHRFLAGYSPAAQEGSINCTSEKYFFQESFLAPNHTKFS 151

Query: 335 CDVDVKLFDPCTEENHFNYHKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVC 394
           C     +                 C                                   
Sbjct: 152 CKFTADML--------------QNC----------------------------------- 162

Query: 395 DVDVKLFDPCTEENHFNYHKSGPCLFLKLNKVYGWIPEYYNDTQNLPRGMPGQLRNYIEN 454
                       +  F + +  PC  +K+N++  ++P                       
Sbjct: 163 --------SGRPDPTFGFAEGKPCFIIKMNRIVKFLPGNST------------------- 195

Query: 455 VARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQG-FAGYFFPYENSE---GYLSPLV 510
                        V C   +         ++Y+P  G ++ ++FPY   +    Y +PLV
Sbjct: 196 ----------APRVDCAFLDQPRDGPPLQVEYFPANGTYSLHYFPYYGKKAQPHYSNPLV 245

Query: 511 AINIPRPRTGILINIKCKAWAKNIKH---LRDGSGSVHFEIMVD 551
           A  +        + I CK  A+++          G V F++ + 
Sbjct: 246 AAKLLNVPRNRDVVIVCKILAEHVSFDNPHDPYEGKVEFKLKIQ 289

>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_B Length = 290

 Score = 72.0 bits (176), Expect = 5e-14
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 94  NTVWVSCEGENPADIENLGDIKYYPKQG-FAGYFFPYENSE---GYLSPLVAINIPRPRT 149
               V C   +         ++Y+P  G ++ ++FPY   +    Y +PLVA  +     
Sbjct: 195 TAPRVDCAFLDQPRDGPPLQVEYFPANGTYSLHYFPYYGKKAQPHYSNPLVAAKLLNVPR 254

Query: 150 GI 151
             
Sbjct: 255 NR 256

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 79/568 (13%), Positives = 146/568 (25%), Gaps = 198/568 (34%)

Query: 3   RFFKDFFCYNFLTHYFLIVSQVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQVK 62
           +F ++    N            Y ++       Q  P  M        + +   N    K
Sbjct: 81  KFVEEVLRIN------------YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 63  PNADHLHL-----SSVYLANYTSYVTTF------KT-----------IDSRRLNTV-WVS 99
            N   L        ++        V         KT           +  +    + W++
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 100 ---CEGENPADIENLGDIKYYPKQGF-------AGYFFPYENSEGYLSPLVAINIPRPRT 149
              C       +E L  + Y     +       +       + +  L  L+    P    
Sbjct: 189 LKNCNSPE-TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENC 246

Query: 150 GISLELIRFPEL---FMYAVRISVARYTSLQLELTQWTSDLEIVGSS-PSHI---HKLRG 202
            + L  ++  +    F  + +I         L  T++    + + ++  +HI   H    
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKI---------LLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 203 NSEKGQKSIF-QVL--------RKMCRIGVFYLVFYSVLAAM--SGVLMW---------- 241
            +    KS+  + L        R++       L   S++A     G+  W          
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL---SIIAESIRDGLATWDNWKHVNCDK 354

Query: 242 ------AFLQTLDPRTPRWLLDESLIGTNPGIGFR---PIP------------------- 273
                 + L  L+P   R + D   +       F     IP                   
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSV-------FPPSAHIPTILLSLIWFDVIKSDVMVV 407

Query: 274 VESDVGSSLIWYKASDRSNYQYWIDSLI---------------KFLDVYKRPGLTPGRGQ 318
           V      SL+             I S+                  +D Y  P     +  
Sbjct: 408 VNKLHKYSLV---EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP-----KT- 458

Query: 319 NIYNCDYDRPPGRGQVCDVDVKLFDPCTEENHFNYHKSG----------PCLFL------ 362
             ++ D   PP       +D   +      +H  +H               +FL      
Sbjct: 459 --FDSDDLIPP------YLDQYFY------SHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504

Query: 363 -KLNK--TLCACLGLRLDT-RVLRDYDRPPGRGQVCD---------VDVKLFDPCTEENH 409
            K+    T     G  L+T + L+ Y     +  +CD           +  F P  EEN 
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFY-----KPYICDNDPKYERLVNAILDFLPKIEENL 559

Query: 410 FNYHKSGPCLFLKLNKVYGWIPEYYNDT 437
               K    L + L          + + 
Sbjct: 560 IC-SKYTDLLRIALMAEDE---AIFEEA 583

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	551
3kdp_B	286	Sodium/potassium-transporting ATPase subunit beta;	100.0
2zxe_B	305	Na+,K+-ATPase beta subunit; membrane protein, ION	100.0
3ixz_B	290	Potassium-transporting ATPase subunit beta; ION pu	100.0
2zxe_B	305	Na+,K+-ATPase beta subunit; membrane protein, ION	100.0
3kdp_B	286	Sodium/potassium-transporting ATPase subunit beta;	100.0
3ixz_B	290	Potassium-transporting ATPase subunit beta; ION pu	99.97

>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*

Probab=100.00  E-value=1.8e-85  Score=661.32  Aligned_cols=271  Identities=25%  Similarity=0.506  Sum_probs=231.6

Q ss_pred             CcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCcccCCCCcceecCCCCCCCCcceE
Q psy17605        203 NSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVESDVGSSL  282 (551)
Q Consensus       203 ~~~~~~~~~~rt~~sW~~I~lFYliFY~~La~lFa~~m~v~l~TLd~~~P~~q~d~slig~~PGL~~rP~~~~~~~~s~l  282 (551)
                      ||++||+ ||||++||++|+|||||||+|||||||+||||||||||+++|+|| |++   ++||||+||++.     +++
T Consensus         1 Np~t~~~-lGRT~~sW~~IllFYliFY~~La~lFa~~m~v~l~TLd~~~Pkyq-d~~---~~PGL~~~P~~~-----~~e   70 (286)
T 3kdp_B            1 NSEKKEF-LGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQ-DRV---APPGLTQIPQSQ-----KTE   70 (286)
T ss_dssp             CCCCCTT-SCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHGGGSCSCSSSCSCC-TTT---CSCCCCBSSCCS-----SSE
T ss_pred             CCCCCce-eCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCccc-CCC---CCCcceeccCCC-----ceE
Confidence            7999999 999999999999999999999999999999999999999999999 666   899999999984     578


Q ss_pred             EEEEcCCCccHHHHHHHHHHhhHhcCCCCCCCCCCCC-ccCCCC--CCCCCCCcceeecccccCCccccCccccCCCCCc
Q psy17605        283 IWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQN-IYNCDY--DRPPGRGQVCDVDVKLFDPCTEENHFNYHKSGPC  359 (551)
Q Consensus       283 I~fn~sd~~s~~~yv~~L~~FL~~Y~~~~~~~~~~~n-~~~C~~--~~~~~~~~~C~F~~~~lg~csg~~~f~~~~g~pc  359 (551)
                      |+|+++|++||+.|+++|++||++|+++.|.   +++ ..+|..  ++.   ..-|                        
T Consensus        71 I~f~~sd~~s~~~yv~~L~~FL~~Y~~~~q~---~~~~~~~C~~~~~~~---~~~~------------------------  120 (286)
T 3kdp_B           71 ISFRPNDPQSYESYVVSIVRFLEKYKDLAQK---DDMIFEDCGNVPSEL---KERG------------------------  120 (286)
T ss_dssp             EECCSSCTTTTHHHHHHHHHHHTTCCTTTSC---STTTEECCCSSCCCC---CCCC------------------------
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhcchhhc---ccccccccccCcccc---eecc------------------------
Confidence            9999999999999999999999999987552   122 234521  110   0000                        


Q ss_pred             eeeccchhhhhhccccccccccccCCCCCCCCcccccCccccCCCC--CCCCCccCCCCcEEEEEeceeeeeeeeccCCC
Q psy17605        360 LFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVKLFDPCT--EENHFNYHKSGPCLFLKLNKVYGWIPEYYNDT  437 (551)
Q Consensus       360 ~~~k~nr~~~~c~~~~~~~~~~~~~~~~~~~~~~C~f~~~~~~~Cs--~d~~fGY~~g~PCI~lKLNkI~Gw~P~~y~~~  437 (551)
                                             |++.+++.++||+|+++++++||  .|++|||++|+||||||||||+||+|++|.  
T Consensus       121 -----------------------~~~~~~~~~~~C~F~~~~lg~Csg~~d~~fGY~~g~PCI~lKlNRIig~~P~~~~--  175 (286)
T 3kdp_B          121 -----------------------EYNNERGERKVCRSRLEWLGNCSGLNDETYGYKDGKPCVIIKLNRVLGFKPKPPK--  175 (286)
T ss_dssp             -----------------------CSSSSSSSCCEECCCGGGSTTSCCCCSSSCCCCSSSCCBCBCCCCCBTCCCCCCC--
T ss_pred             -----------------------ccccCCCCCceeEeccccccCCCCCCCCCCCcCCCCCeEEEEeccccceeecccC--
Confidence                                   22334455555666666556888  899999999999999999999999999873  


Q ss_pred             CCCCCCCCh-hhHHHHhhhhccCCCCCCceEEeeecCCCCCCCCccceEEecCC---CCCCccccCCCC---CCCCCCeE
Q psy17605        438 QNLPRGMPG-QLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQ---GFAGYFFPYENS---EGYLSPLV  510 (551)
Q Consensus       438 ~~LP~~~P~-~Lk~~I~~~~~~~~~~~n~IwVsC~g~~~~D~e~lg~I~Y~P~~---GFp~~YFPY~nq---~gYlsPLV  510 (551)
                      .+.|++||+ +|+             .+.|||+|+|++++|.|++|+|+|||.+   |||++||||+|+   ++|+||||
T Consensus       176 ~~~~~~~p~~~l~-------------~~~i~V~C~~~~~~d~e~ig~i~YyP~~g~~gfp~~YfPYygk~~~~~YlqPLV  242 (286)
T 3kdp_B          176 NESLETYPVMKYN-------------PYVLPVHCTGKRDEDKEKVGTMEYFGLGGYPGFPLQYYPYYGKLLQPKYLQPLM  242 (286)
T ss_dssp             SSSCSSCSSSCCT-------------TTBCCEEEESSSSSCCCCCCCBCCCCTTSCSSCBTTSCSBCTTTSCTTCCCCCC
T ss_pred             CCCcccccchhcc-------------CCceeeeccCcCccccccccceEEcCCCCCCCCCcccCCCCCCcCCCCCcCCeE
Confidence            334688998 665             2689999999999999999999999997   699999999997   99999999


Q ss_pred             EEEcCCCCCCcEEEEEEEeecCCCccC-CCC-ceeEEEEEEeC
Q psy17605        511 AINIPRPRTGILINIKCKAWAKNIKHL-RDG-SGSVHFEIMVD  551 (551)
Q Consensus       511 AVqf~n~~~n~~I~IeCkawAkNI~~d-~d~-~G~V~FeL~Vd  551 (551)
                      ||||.|+++|++|+|||||||+||+++ +|+ +|||+|+|+|.
T Consensus       243 AVqf~n~~~n~~v~VeCk~~a~NI~~~~~d~~~G~v~fkl~i~  285 (286)
T 3kdp_B          243 AVQFTNLTMDTEIRIECKAYGENIGYSEKDRFQGRFDVKIEVK  285 (286)
T ss_dssp             CBCBCCSCCSCCCCBEEEECSTTCCCCSSCTTTTSCCBEEECC
T ss_pred             EEEeecCCCCcEEEEEEEEeccCCCcCCCccccceEEEEEEec
Confidence            999999999999999999999999994 665 89999999984

>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*

Probab=100.00  E-value=3e-83  Score=649.94  Aligned_cols=281  Identities=24%  Similarity=0.463  Sum_probs=219.4

Q ss_pred             cccccccCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCcccCCCCcceecCCCCC
Q psy17605        196 HIHKLRGNSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPVE  275 (551)
Q Consensus       196 ~~~~~~~~~~~~~~~~~rt~~sW~~I~lFYliFY~~La~lFa~~m~v~l~TLd~~~P~~q~d~slig~~PGL~~rP~~~~  275 (551)
                      ...+...||++||+ ||||++||++|+|||||||+|||||||+|||+||||||+++|+||++   | ++||||+||.+  
T Consensus        12 ~~k~f~~n~~~~~~-lGRT~~sW~~IllFYliFY~~La~lF~~~m~v~l~tl~~~~Pk~q~~---i-~~PGL~~~P~~--   84 (305)
T 2zxe_B           12 GWKKFLWDSEKKEF-LGRTGSSWFKIFLFYLIFYGCLAGIFIGTIQVLLLTLSDFEPKYQDR---V-APPGLSHAPYA--   84 (305)
T ss_dssp             -----------------CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSCSCCTT---T-CSCCBCCSSCC--
T ss_pred             hhhhheeCcccCeE-ecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCccccC---C-CCCeeeEecCC--
Confidence            35678899999999 99999999999999999999999999999999999999999999954   2 79999999997  


Q ss_pred             CCCcceEEEEEcCCCccHHHHHHHHHHhhHhcCCCCCCCCCCCC--ccCCCCCCCCCCCcceeecccccCCccccCcccc
Q psy17605        276 SDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQN--IYNCDYDRPPGRGQVCDVDVKLFDPCTEENHFNY  353 (551)
Q Consensus       276 ~~~~s~lI~fn~sd~~s~~~yv~~L~~FL~~Y~~~~~~~~~~~n--~~~C~~~~~~~~~~~C~F~~~~lg~csg~~~f~~  353 (551)
                         ++++|+|+++|+++|+.||++|++||++|+++.|    +++  ..+|+....         +.+.-|          
T Consensus        85 ---~~~~I~f~~~~~~s~~~yv~~l~~FL~~Y~~~~q----~~~~~~~~C~~~~~---------~~~~~g----------  138 (305)
T 2zxe_B           85 ---IKTEISFSISNPKSYESFVKSMHKLMDLYNESSQ----AGNSPFEDCSDTPA---------DYIKRG----------  138 (305)
T ss_dssp             ---SSSEEEECTTCGGGTHHHHHHHHHHHGGGCGGGS----CSTTTEECCCSSCC---------CCCCCS----------
T ss_pred             ---CCeEEEEeCCChhhHHHHHHHHHHHHHHhcchhh----ccccccccCCCccc---------cccccc----------
Confidence               3799999999999999999999999999998765    233  788984211         011111          


Q ss_pred             CCCCCceeeccchhhhhhccccccccccccCCCCCCCCcccccCccccCCCCC--CCCCccCCCCcEEEEEeceeeeeee
Q psy17605        354 HKSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVKLFDPCTE--ENHFNYHKSGPCLFLKLNKVYGWIP  431 (551)
Q Consensus       354 ~~g~pc~~~k~nr~~~~c~~~~~~~~~~~~~~~~~~~~~~C~f~~~~~~~Cs~--d~~fGY~~g~PCI~lKLNkI~Gw~P  431 (551)
                                                   +|..+++.++||+|+++++++|+.  |++|||++|+||||||||||+||+|
T Consensus       139 -----------------------------~~~~~~~~~~~C~F~~~~Lg~Cs~~~d~~fGY~~g~PCI~lKlNrI~g~~P  189 (305)
T 2zxe_B          139 -----------------------------DLDDSQGQKKACRFSRMWLKNCSGLDDTTYGYAEGKPCVVAKLNRIIGFYP  189 (305)
T ss_dssp             -----------------------------SSCSSSSSCCEECCCGGGSTTC--------CCCSSSCCCEEEBCCCBTCCC
T ss_pred             -----------------------------ccccCCCCCceeEeechhccCCCCCCCCCCCcCCCCCeEEEEecceecccc
Confidence                                         255566677777777777778984  5569999999999999999999999


Q ss_pred             eccCCCCCCCCCCChhhHHHHhhhhccCCCCCCceEEeeecCCCCCCCCccceEEecCC---CCCCccccCCC---CCCC
Q psy17605        432 EYYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQ---GFAGYFFPYEN---SEGY  505 (551)
Q Consensus       432 ~~y~~~~~LP~~~P~~Lk~~I~~~~~~~~~~~n~IwVsC~g~~~~D~e~lg~I~Y~P~~---GFp~~YFPY~n---q~gY  505 (551)
                      ++|++ .+||+++   |+++++         .+.|||+|+|++++|.|++|+|+|||.+   |||++||||+|   |++|
T Consensus       190 ~~~~~-~~lP~~~---l~~~~~---------~~~I~v~C~~~~~~d~e~~g~i~Y~P~~g~~gfp~~YfPY~gk~~~~~Y  256 (305)
T 2zxe_B          190 KPLKN-TTDLPEE---LQANYN---------QYVLPLRCAAKREEDREKIGSIEYFGLGGYAGFPLQYYPYYGKRLQKKY  256 (305)
T ss_dssp             CCCCT-TSCCTTT---TTTCCT---------TTEEEEEEEC-----CCCCSCEEEECGGGCSEEEGGGCSBCCTTTCTTC
T ss_pred             cCCcc-ccccHHH---Hhhhhc---------cCCCceEeeccccccccccCCeEEECCCCCCCcCccccCCCCccCCcCC
Confidence            98765 5555443   255553         3699999999999999999999999998   89999999999   9999


Q ss_pred             CCCeEEEEcCCCCCCcEEEEEEEeecCCCccC-CCC-ceeEEEEEEeC
Q psy17605        506 LSPLVAINIPRPRTGILINIKCKAWAKNIKHL-RDG-SGSVHFEIMVD  551 (551)
Q Consensus       506 lsPLVAVqf~n~~~n~~I~IeCkawAkNI~~d-~d~-~G~V~FeL~Vd  551 (551)
                      +||||||||.|+++|++|+|||||||+||.++ +|+ .|+|||+|+||
T Consensus       257 l~PLVAVqf~n~~~n~~v~VeCka~a~NI~~~~~d~~~G~v~fkl~i~  304 (305)
T 2zxe_B          257 LQPLLAIQFTNLTQNMELRIECKVYGENIDYSEKDRFRGRFEVKIEVK  304 (305)
T ss_dssp             CCCEEEEEECCSCCSSCEEEEEEECCSSCCCCSSCTTSSBCCEEEEEC
T ss_pred             cCCeEEEEeecCCCCCEEEEEEEEeccCCCcCCCccccceEEEEEEec
Confidence            99999999999999999999999999999886 664 99999999997

>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B

Probab=100.00  E-value=1.3e-81  Score=634.44  Aligned_cols=266  Identities=21%  Similarity=0.450  Sum_probs=231.5

Q ss_pred             ccccccccCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCcccCCCCcceecCCCC
Q psy17605        195 SHIHKLRGNSEKGQKSIFQVLRKMCRIGVFYLVFYSVLAAMSGVLMWAFLQTLDPRTPRWLLDESLIGTNPGIGFRPIPV  274 (551)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~rt~~sW~~I~lFYliFY~~La~lFa~~m~v~l~TLd~~~P~~q~d~slig~~PGL~~rP~~~  274 (551)
                      ....+...||++||+ ||||++||++|+|||||||+|||||||+|||+||||||+++|+||++.    ++||||+||++.
T Consensus        15 ~~~k~f~~N~~t~~~-lGRT~~sW~~IllFYliFY~~LaglFa~~m~v~l~Tld~~~Pkyqd~~----~~PGL~~~P~~~   89 (290)
T 3ixz_B           15 EEFQRYCWNPDTGQM-LGRTLSRWVWISLYYVAFYVVMSGIFALCIYVLMRTIDPYTPDYQDQL----KSPGVTLRPDVY   89 (290)
T ss_pred             hhhHhhEEcCCCCce-eCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccc----CCCcceecCCCC
Confidence            456778999999999 999999999999999999999999999999999999999999999542    799999999985


Q ss_pred             CCCCcceEEEEEcCCCccHHHHHHHHHHhhHhcCCCCCCCCCCCCccCCCCCCCCCCCcceeecccccCCccccCccccC
Q psy17605        275 ESDVGSSLIWYKASDRSNYQYWIDSLIKFLDVYKRPGLTPGRGQNIYNCDYDRPPGRGQVCDVDVKLFDPCTEENHFNYH  354 (551)
Q Consensus       275 ~~~~~s~lI~fn~sd~~s~~~yv~~L~~FL~~Y~~~~~~~~~~~n~~~C~~~~~~~~~~~C~F~~~~lg~csg~~~f~~~  354 (551)
                        ++++++|+|+++|++||+.|+++|++||++|+++.|     ++..+|+.++.        |...              
T Consensus        90 --~~~~~~I~f~~sd~~s~~~yv~~l~~FL~~Y~~~~q-----~~~~~C~~~~~--------~~q~--------------  140 (290)
T 3ixz_B           90 --GEKGLDISYNVSDSTTWAGLAHTLHRFLAGYSPAAQ-----EGSINCTSEKY--------FFQE--------------  140 (290)
T ss_pred             --CCcceEEEEeCCCchHHHHHHHHHHHHHHHhCchhc-----cCcccCCCccc--------cccc--------------
Confidence              567899999999999999999999999999999754     34567876531        0000              


Q ss_pred             CCCCceeeccchhhhhhccccccccccccCCCCCCCCcccccCccccCCCCC--CCCCccCCCCcEEEEEeceeeeeeee
Q psy17605        355 KSGPCLFLKLNKTLCACLGLRLDTRVLRDYDRPPGRGQVCDVDVKLFDPCTE--ENHFNYHKSGPCLFLKLNKVYGWIPE  432 (551)
Q Consensus       355 ~g~pc~~~k~nr~~~~c~~~~~~~~~~~~~~~~~~~~~~C~f~~~~~~~Cs~--d~~fGY~~g~PCI~lKLNkI~Gw~P~  432 (551)
                                                  +++.+++..+||+|+++++++|+.  |++|||++|+||||||||||+||+|+
T Consensus       141 ----------------------------~~~~~~~~~~~C~F~~~~lg~Csg~~d~~fGY~~g~PCI~iKlNrIig~~P~  192 (290)
T 3ixz_B          141 ----------------------------SFLAPNHTKFSCKFTADMLQNCSGRPDPTFGFAEGKPCFIIKMNRIVKFLPG  192 (290)
T ss_pred             ----------------------------cccCCCCCCceeeccccccCcCCCCCCCCCCcCCCCceEEEEeceEEeeecC
Confidence                                        122334445566666666668884  89999999999999999999999998


Q ss_pred             ccCCCCCCCCCCChhhHHHHhhhhccCCCCCCceEEeeecCCCCCCCCccceEEecCC-CCCCccccCC---CCCCCCCC
Q psy17605        433 YYNDTQNLPRGMPGQLRNYIENVARTNPKQLNTVWVSCEGENPADIENLGDIKYYPKQ-GFAGYFFPYE---NSEGYLSP  508 (551)
Q Consensus       433 ~y~~~~~LP~~~P~~Lk~~I~~~~~~~~~~~n~IwVsC~g~~~~D~e~lg~I~Y~P~~-GFp~~YFPY~---nq~gYlsP  508 (551)
                      .+                             +.+||+|++++++|.+++|+|+|||.+ |||++||||+   +|++|+||
T Consensus       193 ~~-----------------------------~~~~V~C~~~~~~~~~~~~~i~YyP~~ggf~~~YfPYygk~~q~~YlqP  243 (290)
T 3ixz_B          193 NS-----------------------------TAPRVDCAFLDQPRDGPPLQVEYFPANGTYSLHYFPYYGKKAQPHYSNP  243 (290)
T ss_pred             CC-----------------------------CCCcceecCCCcccccCcceEEECCCCCCcCceeCCccCCcCCcCCcCC
Confidence            53                             258999999997777888899999998 8999999999   68999999


Q ss_pred             eEEEEcCCCCCCcEEEEEEEeecCCCccC--CCC-ceeEEEEEEeC
Q psy17605        509 LVAINIPRPRTGILINIKCKAWAKNIKHL--RDG-SGSVHFEIMVD  551 (551)
Q Consensus       509 LVAVqf~n~~~n~~I~IeCkawAkNI~~d--~d~-~G~V~FeL~Vd  551 (551)
                      ||||||.|+++|++|+|||||||+||++|  +|+ .|+|+|+|+|+
T Consensus       244 LVAVqf~n~~~n~~v~VeCk~~a~NI~~d~~~d~~~G~V~Fkl~i~  289 (290)
T 3ixz_B          244 LVAAKLLNVPRNRDVVIVCKILAEHVSFDNPHDPYEGKVEFKLKIQ  289 (290)
T ss_pred             eEEEEEecCCCCcEEEEEEEEeccCCccCCCCCCccceEEEEEEec
Confidence            99999999999999999999999999997  786 99999999986

>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*

Probab=100.00  E-value=1.9e-35  Score=300.15  Aligned_cols=126  Identities=18%  Similarity=0.352  Sum_probs=99.0

Q ss_pred             cCccccCCC-cEEEEEcceeeeeeeccCCCCCCCCCCCChhH-HHHHhhhcccCCCCCCCCcccccchhhhhccccceee
Q psy17605          6 KDFFCYNFL-THYFLIVSQVYGWIPEYYNDTQNLPRGMPGQL-RNYIENVARTNPKQVKPNADHLHLSSVYLANYTSYVT   83 (551)
Q Consensus         6 ~~~~gy~~~-pc~flKlN~i~gw~P~~y~~~~~lp~~mP~~l-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (551)
                      |++|||++| ||||||||||+||+|++|++ ++    ||++| +.++                                 
T Consensus       165 d~~fGY~~g~PCI~lKlNrI~g~~P~~~~~-~~----lP~~~l~~~~---------------------------------  206 (305)
T 2zxe_B          165 DTTYGYAEGKPCVVAKLNRIIGFYPKPLKN-TT----DLPEELQANY---------------------------------  206 (305)
T ss_dssp             ----CCCSSSCCCEEEBCCCBTCCCCCCCT-TS----CCTTTTTTCC---------------------------------
T ss_pred             CCCCCcCCCCCeEEEEecceecccccCCcc-cc----ccHHHHhhhh---------------------------------
Confidence            456999999 99999999999999998765 44    45544 3222                                 


Q ss_pred             eeeeeccCCCcceeEeeeecCCCCcCCCcceeeecCC---CCCCccccccC---CCCCCCceEEEEcCCCCCCceeeeee
Q psy17605         84 TFKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQ---GFAGYFFPYEN---SEGYLSPLVAINIPRPRTGISLELIR  157 (551)
Q Consensus        84 ~~~~~~~~~~~~IwVsC~~~~~~D~e~ig~i~YyP~~---Gfp~~YFPY~n---qpgYlsPLVAVqF~n~~~~~~i~~~~  157 (551)
                              +.+.|||+|++++++|.|++|+|+|||.+   |||++||||+|   |++|+||||||||.|+++|++|+   
T Consensus       207 --------~~~~I~v~C~~~~~~d~e~~g~i~Y~P~~g~~gfp~~YfPY~gk~~~~~Yl~PLVAVqf~n~~~n~~v~---  275 (305)
T 2zxe_B          207 --------NQYVLPLRCAAKREEDREKIGSIEYFGLGGYAGFPLQYYPYYGKRLQKKYLQPLLAIQFTNLTQNMELR---  275 (305)
T ss_dssp             --------TTTEEEEEEEC-----CCCCSCEEEECGGGCSEEEGGGCSBCCTTTCTTCCCCEEEEEECCSCCSSCEE---
T ss_pred             --------ccCCCceEeeccccccccccCCeEEECCCCCCCcCccccCCCCccCCcCCcCCeEEEEeecCCCCCEEE---
Confidence                    12589999999999999999999999998   79999999999   99999999999999999999999   


Q ss_pred             ceEEEeeccccccC----CccceeEEee
Q psy17605        158 FPELFMYAVRISVA----RYTSLQLELT  181 (551)
Q Consensus       158 ~~~c~~~A~NI~~d----~~~~~~~~~~  181 (551)
                       |||++||+||..|    +.-+...||+
T Consensus       276 -VeCka~a~NI~~~~~d~~~G~v~fkl~  302 (305)
T 2zxe_B          276 -IECKVYGENIDYSEKDRFRGRFEVKIE  302 (305)
T ss_dssp             -EEEEECCSSCCCCSSCTTSSBCCEEEE
T ss_pred             -EEEEEeccCCCcCCCccccceEEEEEE
Confidence             9999999999763    2344555554

>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*

Probab=100.00  E-value=1.7e-35  Score=298.22  Aligned_cols=126  Identities=19%  Similarity=0.358  Sum_probs=109.5

Q ss_pred             cCccccCCC-cEEEEEcceeeeeeeccCCCCCCCCCCCCh-hHHHHHhhhcccCCCCCCCCcccccchhhhhccccceee
Q psy17605          6 KDFFCYNFL-THYFLIVSQVYGWIPEYYNDTQNLPRGMPG-QLRNYIENVARTNPKQVKPNADHLHLSSVYLANYTSYVT   83 (551)
Q Consensus         6 ~~~~gy~~~-pc~flKlN~i~gw~P~~y~~~~~lp~~mP~-~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (551)
                      |+.|||++| ||||||||||+||+|+.|  +++.|++||+ +|+                                    
T Consensus       147 d~~fGY~~g~PCI~lKlNRIig~~P~~~--~~~~~~~~p~~~l~------------------------------------  188 (286)
T 3kdp_B          147 DETYGYKDGKPCVIIKLNRVLGFKPKPP--KNESLETYPVMKYN------------------------------------  188 (286)
T ss_dssp             SSSCCCCSSSCCBCBCCCCCBTCCCCCC--CSSSCSSCSSSCCT------------------------------------
T ss_pred             CCCCCcCCCCCeEEEEeccccceeeccc--CCCCcccccchhcc------------------------------------
Confidence            678999999 999999999999999987  3445788998 554                                    


Q ss_pred             eeeeeccCCCcceeEeeeecCCCCcCCCcceeeecCC---CCCCccccccCC---CCCCCceEEEEcCCCCCCceeeeee
Q psy17605         84 TFKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQ---GFAGYFFPYENS---EGYLSPLVAINIPRPRTGISLELIR  157 (551)
Q Consensus        84 ~~~~~~~~~~~~IwVsC~~~~~~D~e~ig~i~YyP~~---Gfp~~YFPY~nq---pgYlsPLVAVqF~n~~~~~~i~~~~  157 (551)
                               .+.|||+|++++++|.|++|+|+|||.+   |||++||||+|+   ++|+||||||||.|+++|++|+   
T Consensus       189 ---------~~~i~V~C~~~~~~d~e~ig~i~YyP~~g~~gfp~~YfPYygk~~~~~YlqPLVAVqf~n~~~n~~v~---  256 (286)
T 3kdp_B          189 ---------PYVLPVHCTGKRDEDKEKVGTMEYFGLGGYPGFPLQYYPYYGKLLQPKYLQPLMAVQFTNLTMDTEIR---  256 (286)
T ss_dssp             ---------TTBCCEEEESSSSSCCCCCCCBCCCCTTSCSSCBTTSCSBCTTTSCTTCCCCCCCBCBCCSCCSCCCC---
T ss_pred             ---------CCceeeeccCcCccccccccceEEcCCCCCCCCCcccCCCCCCcCCCCCcCCeEEEEeecCCCCcEEE---
Confidence                     1479999999999999999999999997   599999999995   9999999999999999999999   


Q ss_pred             ceEEEeecccccc-C---CccceeEEeee
Q psy17605        158 FPELFMYAVRISV-A---RYTSLQLELTQ  182 (551)
Q Consensus       158 ~~~c~~~A~NI~~-d---~~~~~~~~~~~  182 (551)
                       |||++||+||.+ |   +.-+...||+-
T Consensus       257 -VeCk~~a~NI~~~~~d~~~G~v~fkl~i  284 (286)
T 3kdp_B          257 -IECKAYGENIGYSEKDRFQGRFDVKIEV  284 (286)
T ss_dssp             -BEEEECSTTCCCCSSCTTTTSCCBEEEC
T ss_pred             -EEEEEeccCCCcCCCccccceEEEEEEe
Confidence             999999999998 2   23345555543

>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B

Probab=99.97  E-value=5e-32  Score=273.55  Aligned_cols=101  Identities=17%  Similarity=0.298  Sum_probs=92.8

Q ss_pred             cCccccCCC-cEEEEEcceeeeeeeccCCCCCCCCCCCChhHHHHHhhhcccCCCCCCCCcccccchhhhhccccceeee
Q psy17605          6 KDFFCYNFL-THYFLIVSQVYGWIPEYYNDTQNLPRGMPGQLRNYIENVARTNPKQVKPNADHLHLSSVYLANYTSYVTT   84 (551)
Q Consensus         6 ~~~~gy~~~-pc~flKlN~i~gw~P~~y~~~~~lp~~mP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (551)
                      |+.|||++| ||||||||||+||+|+.|                                                    
T Consensus       167 d~~fGY~~g~PCI~iKlNrIig~~P~~~----------------------------------------------------  194 (290)
T 3ixz_B          167 DPTFGFAEGKPCFIIKMNRIVKFLPGNS----------------------------------------------------  194 (290)
T ss_pred             CCCCCcCCCCceEEEEeceEEeeecCCC----------------------------------------------------
Confidence            678999999 999999999999999843                                                    


Q ss_pred             eeeeccCCCcceeEeeeecCCCCcCCCcceeeecCCC-CCCccccccC---CCCCCCceEEEEcCCCCCCceeeeeeceE
Q psy17605         85 FKTIDSRRLNTVWVSCEGENPADIENLGDIKYYPKQG-FAGYFFPYEN---SEGYLSPLVAINIPRPRTGISLELIRFPE  160 (551)
Q Consensus        85 ~~~~~~~~~~~IwVsC~~~~~~D~e~ig~i~YyP~~G-fp~~YFPY~n---qpgYlsPLVAVqF~n~~~~~~i~~~~~~~  160 (551)
                               +.|||+|++++++|.+++|+|+|||.+| ||++||||+|   |++|+||||||||.|+++|++|+    ||
T Consensus       195 ---------~~~~V~C~~~~~~~~~~~~~i~YyP~~ggf~~~YfPYygk~~q~~YlqPLVAVqf~n~~~n~~v~----Ve  261 (290)
T 3ixz_B          195 ---------TAPRVDCAFLDQPRDGPPLQVEYFPANGTYSLHYFPYYGKKAQPHYSNPLVAAKLLNVPRNRDVV----IV  261 (290)
T ss_pred             ---------CCCcceecCCCcccccCcceEEECCCCCCcCceeCCccCCcCCcCCcCCeEEEEEecCCCCcEEE----EE
Confidence                     1489999999876667788999999995 9999999995   99999999999999999999999    99


Q ss_pred             EEeeccccccC
Q psy17605        161 LFMYAVRISVA  171 (551)
Q Consensus       161 c~~~A~NI~~d  171 (551)
                      |++||+||.+|
T Consensus       262 Ck~~a~NI~~d  272 (290)
T 3ixz_B          262 CKILAEHVSFD  272 (290)
T ss_pred             EEEeccCCccC
Confidence            99999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00