Psyllid ID: psy1760

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790---
MILPSISPVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLINIIKIILIYKYMNGDVAEWLKALPC
ccccccccEEEEEccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHEEEEEcccccccccEEEEEcccccccHHHHHHHHHHHccccccccccccccccccccccEEEcccccEEEEEEEEEEEEEEEEEEEcccEEEEEEEEccccHHHHHHHHccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEEccEEEEEccEEEEEEccccccccccHHHHHcccccEEEEEEEccccccccHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccccHHHHHHHHccccccccccccccEEEEEEcccccccEEEEEEEEEEEEEccccEEEEEEcccccEEEEEEEEEEEEcccccEEccccccccEEEEccccccccccccccccccccccccccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHcEEEEEEEcccccccEEEEccHHHHHHHHHHHcccccccccccccEEEEEEEccEEEccEEEEEEEcccccHHHHHHHHHHccccEEccEEccccEEEEEEEccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEcccccHHHHHHccccccccEEEcccccccccEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEccc
cccccccccEEEEcccEcccccHHHHHHHHHHHcccccEEEccccccccEEEEEEEEHHHHHHcHHHHcccEEEEEEEEEcEEEcccEccccEEEccccccccHHHHHHHHHcccEEEEEccccccccEEccEEHHHHHHcccccccccEEEEEEEEEEEEEEccEEEEEEEEcccccHHHHHHHHHHHHcccEEEEEEEEEEEccccHHHcEEHEccccccHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHccccccEEEEEEccccEEEEEEccccHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHHHccccHHHccccEEEEEcccccccccHHHcccccHHHHHHHHHHccccccccccccEEEEEEEcccccEEEEEEEEEEEEEEEcccEEEEEEcccccEEcEEEEEEEcccccEEEEEcHcccccEEEEEccccccccccccccccccccccccccccEEEEEEEEcccccccccccEEcHHHHHHHHHHHHHHcEEEEEccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEcccEEEEEEEcccEcccEEEEEEEccHHcHHHHHHHHccccccccccccccccEEEEEEEEccccEEEEcccHEEccccccHEEEcccccccccccccccccccccEEEEEccccHHHHHHHHHHHHcccEEEccccEEEEEEEEEEEcccccEEEEccccccccEEEcccccccEEEcccHEEcHHHHHHHHccccEEEEccc
milpsispvsvvipkykpyglssnNALKKIKYLLNAkkvgytgtldpfatgllplcfgeatKFSNYLSEADKYYEAIIHLGittetgdiegkiidfnknipNSIEIIEKILINFhgkisqippmysalkykgiplykyarsgitiKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGidkltldknIAIIAHVDHGKTTLIDHLLrqsgtfrknqninarimdsneieKERGITIFskncsieyngtriniidtpghadfggEVERILSMVDNVLLLIDavegpmpqtrfVTRKALKLGFKPIVVVNkidrsnarpewvvdATFDLFDKLCAteeqldfpVIYTSALhgyanenskarqgnmIPLFEAILKYvpvhkdnsnnplQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVimngpddkpnkakinQIRVFKGLDRVLVNEALSGDIVLITGIEEIcigsticdpskpnglpmlnideptltinfmvnnsplagregkfitTRQIKNRLDHeiknniglrvtqnkhddsiyevsgrgelHLTILIENMRregyelsvsrPRVIFKtlngelyepyenlFVDIEEINQGIIMQKLnyrggdlknieINEKERVRleyripsrgligfqnefitltrgtglishvfeeyapfynkskydlgkrrngvlisqySGKAVAYSLWKLqdrgrlfinhndlvyEGMIIGIhsrdndllvnpikekqltnirssgsDEAIQLINIIKIILIYKYMNGDVAEWLKALPC
milpsispvsvvipkykpyglssnnALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYarsgitikrklRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRqsgtfrknqninarimdsneiekERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVtrkalklgfkpivvvnkidrsnarpewVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMngpddkpnkakiNQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIknrldheiknniglrvtqnkhddsiyevsgrgelHLTILIENMrregyelsvsrPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLnyrggdlknieinekervrleyripsrgligfqNEFITLTRGTGLISHVFEEYAPFynkskydlgkrrnGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKqltnirssgsdeaIQLINIIKIILIYKYMNGDVAEWLKALPC
MILPSISPVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGitikrklryikiykitiidytiPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAiqliniikiiliykyMNGDVAEWLKALPC
********VSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNG******KAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIR***SDEAIQLINIIKIILIYKYMNGDVAEWLKA***
****S*SPVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHC**********************************TLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLINIIKIILIYKYMNGDVAEWLKALPC
MILPSISPVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLINIIKIILIYKYMNGDVAEWLKALPC
*ILPSISPVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLINIIKIILIYKYMNGDVAEWLKALPC
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MILPSISPVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETGDIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTIPYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLINIIKIILIYKYMNGDVAEWLKALPC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query793 2.2.26 [Sep-21-2011]
P0A3B4607 GTP-binding protein TypA/ yes N/A 0.706 0.922 0.553 0.0
P32132607 GTP-binding protein TypA/ N/A N/A 0.706 0.922 0.553 0.0
P0A3B1607 GTP-binding protein TypA/ yes N/A 0.706 0.922 0.553 0.0
P0A3B3607 GTP-binding protein TypA/ N/A N/A 0.706 0.922 0.553 0.0
P0A3B2607 GTP-binding protein TypA/ yes N/A 0.706 0.922 0.553 0.0
P57508607 GTP-binding protein TypA/ yes N/A 0.706 0.922 0.555 1e-180
Q8K9C8609 GTP-binding protein TypA/ yes N/A 0.706 0.919 0.550 1e-177
P44910616 GTP-binding protein TypA/ yes N/A 0.706 0.909 0.551 1e-176
Q89AC9611 GTP-binding protein TypA/ yes N/A 0.716 0.929 0.555 1e-176
O07631612 GTP-binding protein TypA/ yes N/A 0.725 0.939 0.501 1e-167
>sp|P0A3B4|TYPA_SHIFL GTP-binding protein TypA/BipA OS=Shigella flexneri GN=typA PE=3 SV=1 Back     alignment and function desciption
 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/565 (55%), Positives = 423/565 (74%), Gaps = 5/565 (0%)

Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
           +NIAIIAHVDHGKTTL+D LL+QSGTF        R+MDSN++EKERGITI +KN +I++
Sbjct: 6   RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW 65

Query: 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 330
           N  RINI+DTPGHADFGGEVER++SMVD+VLL++DA +GPMPQTRFVT+KA   G KPIV
Sbjct: 66  NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIV 125

Query: 331 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 390
           V+NK+DR  ARP+WVVD  FDLF  L AT+EQLDFP++Y SAL+G A  + +    +M P
Sbjct: 126 VINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTP 185

Query: 391 LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD 450
           L++AI+ +VP    + + P Q+QI  L+Y+SY+G IGIGRI  G++K  Q V I++  + 
Sbjct: 186 LYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDS-EG 244

Query: 451 KPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 510
           K   AK+ ++    GL+R+  + A +GDIV ITG+ E+ I  T+CD      LP L++DE
Sbjct: 245 KTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDE 304

Query: 511 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGE 570
           PT+++ F VN SP  G+EGKF+T+RQI +RL+ E+ +N+ LRV + +  D+ + VSGRGE
Sbjct: 305 PTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADA-FRVSGRGE 363

Query: 571 LHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRG 630
           LHL++LIENMRREG+EL+VSRP+VIF+ ++G   EPYEN+ +D+EE +QG +MQ L  R 
Sbjct: 364 LHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERK 423

Query: 631 GDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDL 690
           GDLKN+  + K RVRL+Y IPSRGLIGF++EF+T+T GTGL+   F  Y    +    ++
Sbjct: 424 GDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYD---DVRPGEV 480

Query: 691 GKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKE 750
           G+R+NGVLIS   GKAVA++L+ LQDRG+LF+ H   VYEG IIGIHSR NDL VN +  
Sbjct: 481 GQRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTG 540

Query: 751 KQLTNIRSSGSDEAIQLINIIKIIL 775
           K+LTN+R+SG+DEA+ L+  I++ L
Sbjct: 541 KKLTNMRASGTDEAVVLVPPIRMTL 565
Not known; probably interacts with the ribosomes in a GTP dependent manner.
Shigella flexneri (taxid: 623)
>sp|P32132|TYPA_ECOLI GTP-binding protein TypA/BipA OS=Escherichia coli (strain K12) GN=typA PE=1 SV=2 Back     alignment and function description
>sp|P0A3B1|TYPA_ECOL6 GTP-binding protein TypA/BipA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=typA PE=3 SV=1 Back     alignment and function description
>sp|P0A3B3|TYPA_ECO57 GTP-binding protein TypA/BipA OS=Escherichia coli O157:H7 GN=typA PE=3 SV=1 Back     alignment and function description
>sp|P0A3B2|TYPA_ECO27 GTP-binding protein TypA/BipA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=typA PE=3 SV=1 Back     alignment and function description
>sp|P57508|TYPA_BUCAI GTP-binding protein TypA/BipA homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=typA PE=3 SV=1 Back     alignment and function description
>sp|Q8K9C8|TYPA_BUCAP GTP-binding protein TypA/BipA homolog OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=typA PE=3 SV=1 Back     alignment and function description
>sp|P44910|TYPA_HAEIN GTP-binding protein TypA/BipA homolog OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=typA PE=1 SV=1 Back     alignment and function description
>sp|Q89AC9|TYPA_BUCBP GTP-binding protein TypA/BipA homolog OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=typA PE=3 SV=2 Back     alignment and function description
>sp|O07631|TYPA_BACSU GTP-binding protein TypA/BipA homolog OS=Bacillus subtilis (strain 168) GN=typA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query793
340788622611 GTP-binding protein TypA [Collimonas fun 0.732 0.950 0.726 0.0
152980795612 GTP-binding elongation factor [Janthinob 0.732 0.949 0.718 0.0
134095607612 GTP-binding elongation factor family pro 0.732 0.949 0.716 0.0
399017457625 GTP-binding protein TypA/BipA [Herbaspir 0.732 0.929 0.716 0.0
300312895627 GTP-binding elongation factor protein [H 0.704 0.891 0.730 0.0
409407355613 GTP-binding elongation factor protein [H 0.704 0.911 0.725 0.0
415942722613 GTP-binding protein TypA/BipA [Herbaspir 0.704 0.911 0.725 0.0
329905070610 GTP-binding protein TypA/BipA [Oxalobact 0.731 0.950 0.687 0.0
398832207610 GTP-binding protein TypA/BipA [Herbaspir 0.704 0.916 0.721 0.0
237748741610 GTP-binding elongation factor family pro 0.712 0.926 0.694 0.0
>gi|340788622|ref|YP_004754087.1| GTP-binding protein TypA [Collimonas fungivorans Ter331] gi|340553889|gb|AEK63264.1| GTP-binding protein TypA/BipA [Collimonas fungivorans Ter331] Back     alignment and taxonomy information
 Score =  885 bits (2288), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/582 (72%), Positives = 494/582 (84%), Gaps = 1/582 (0%)

Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
           +NIAIIAHVDHGKTTL+D LLRQSGTFR NQ+++AR+MDSN+IEKERGITI SKNC++EY
Sbjct: 9   RNIAIIAHVDHGKTTLVDQLLRQSGTFRDNQHVDARVMDSNDIEKERGITILSKNCAVEY 68

Query: 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 330
            GT INI+DTPGHADFGGEVER+LSMVD+VLLL+DA EGPMPQTRFVTRKAL LG KPIV
Sbjct: 69  KGTHINIVDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKALALGLKPIV 128

Query: 331 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 390
           VVNKIDR NA P+  V+ATF+LFDKL AT+EQLDFP+IY S   GYA      R GNM P
Sbjct: 129 VVNKIDRENADPQKAVNATFELFDKLGATDEQLDFPIIYASGFKGYAGLEDTVRDGNMEP 188

Query: 391 LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD 450
           LF+AILK+VP  +D+ N PLQLQI SLEYSSY+GKIG+GRIL G++K+LQDVV MNGPDD
Sbjct: 189 LFDAILKHVPAREDDPNGPLQLQITSLEYSSYVGKIGVGRILRGKVKALQDVVWMNGPDD 248

Query: 451 KPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 510
           KP KA+INQ+  F+GLDRVL +EAL+GDIVLI GIEEI IGSTIC P  P GLPML +DE
Sbjct: 249 KPTKARINQVLTFRGLDRVLADEALAGDIVLINGIEEISIGSTICAPDHPEGLPMLKVDE 308

Query: 511 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGE 570
           PTLT+NFMVNNSPLAGREGKF+TTRQIK+RLD E+K N+ LRV Q + DDS YEVSGRGE
Sbjct: 309 PTLTMNFMVNNSPLAGREGKFVTTRQIKDRLDRELKANMALRVVQAEGDDSTYEVSGRGE 368

Query: 571 LHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRG 630
           LHLTILIENMRREGYEL+VSRPRV+FK ++G   EPYENL VD+EE NQG +M++L  R 
Sbjct: 369 LHLTILIENMRREGYELAVSRPRVVFKMVDGVRQEPYENLTVDVEEANQGGVMEELGRRR 428

Query: 631 GDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDL 690
           GDL+N+E + K RVRLEYRIP+RGLIGFQ EF+TLTRGTGL+SHVF+EYAP  + SK +L
Sbjct: 429 GDLQNMEPDGKGRVRLEYRIPARGLIGFQGEFMTLTRGTGLMSHVFDEYAPV-DTSKGEL 487

Query: 691 GKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKE 750
           G RRNGVLISQ  G AVAY++WKLQDRGR+F++HND VYEGMIIGIHSRDNDL+VNPIK 
Sbjct: 488 GGRRNGVLISQDDGAAVAYAIWKLQDRGRMFVSHNDPVYEGMIIGIHSRDNDLVVNPIKG 547

Query: 751 KQLTNIRSSGSDEAIQLINIIKIILIYKYMNGDVAEWLKALP 792
           KQLTN+RSSG+DEA++L+  I++ L Y     D  E ++  P
Sbjct: 548 KQLTNVRSSGTDEAVRLVPPIEMSLEYAVEFIDDDELVEVTP 589

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|152980795|ref|YP_001354182.1| GTP-binding elongation factor [Janthinobacterium sp. Marseille] gi|151280872|gb|ABR89282.1| GTP-binding elongation factor [Janthinobacterium sp. Marseille] Back     alignment and taxonomy information
>gi|134095607|ref|YP_001100682.1| GTP-binding elongation factor family protein [Herminiimonas arsenicoxydans] gi|133739510|emb|CAL62561.1| GTP-binding protein TypA/BipA (Tyrosine phosphorylated protein A) [Herminiimonas arsenicoxydans] Back     alignment and taxonomy information
>gi|399017457|ref|ZP_10719649.1| GTP-binding protein TypA/BipA [Herbaspirillum sp. CF444] gi|398103331|gb|EJL93502.1| GTP-binding protein TypA/BipA [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
>gi|300312895|ref|YP_003776987.1| GTP-binding elongation factor protein [Herbaspirillum seropedicae SmR1] gi|300075680|gb|ADJ65079.1| GTP-binding elongation factor protein [Herbaspirillum seropedicae SmR1] Back     alignment and taxonomy information
>gi|409407355|ref|ZP_11255806.1| GTP-binding elongation factor protein [Herbaspirillum sp. GW103] gi|386433106|gb|EIJ45932.1| GTP-binding elongation factor protein [Herbaspirillum sp. GW103] Back     alignment and taxonomy information
>gi|415942722|ref|ZP_11555964.1| GTP-binding protein TypA/BipA [Herbaspirillum frisingense GSF30] gi|407758799|gb|EKF68572.1| GTP-binding protein TypA/BipA [Herbaspirillum frisingense GSF30] Back     alignment and taxonomy information
>gi|329905070|ref|ZP_08273998.1| GTP-binding protein TypA/BipA [Oxalobacteraceae bacterium IMCC9480] gi|327547742|gb|EGF32518.1| GTP-binding protein TypA/BipA [Oxalobacteraceae bacterium IMCC9480] Back     alignment and taxonomy information
>gi|398832207|ref|ZP_10590371.1| GTP-binding protein TypA/BipA [Herbaspirillum sp. YR522] gi|398223744|gb|EJN10079.1| GTP-binding protein TypA/BipA [Herbaspirillum sp. YR522] Back     alignment and taxonomy information
>gi|237748741|ref|ZP_04579221.1| GTP-binding elongation factor family protein [Oxalobacter formigenes OXCC13] gi|229380103|gb|EEO30194.1| GTP-binding elongation factor family protein [Oxalobacter formigenes OXCC13] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query793
UNIPROTKB|Q603F4606 typA "GTP-binding protein TypA 0.696 0.910 0.575 1.2e-170
TIGR_CMR|SO_4408603 SO_4408 "virulence regulator B 0.692 0.910 0.570 2.2e-167
TIGR_CMR|VC_2744609 VC_2744 "GTP-binding protein T 0.697 0.908 0.566 9.7e-167
UNIPROTKB|P32132607 typA "protein possibly involve 0.697 0.911 0.557 1e-164
TIGR_CMR|CBU_0884602 CBU_0884 "virulence regulator 0.689 0.908 0.593 2.7e-164
UNIPROTKB|Q489A8605 typA "GTP-binding protein TypA 0.697 0.914 0.536 6.5e-161
TIGR_CMR|CPS_0606605 CPS_0606 "GTP-binding protein 0.697 0.914 0.536 6.5e-161
UNIPROTKB|Q88AM8606 typA "GTP-binding protein TypA 0.691 0.904 0.544 6.8e-159
UNIPROTKB|Q74FV3598 typA "Translation-regulating m 0.689 0.914 0.516 1.2e-150
TIGR_CMR|GSU_0500598 GSU_0500 "GTP-binding protein 0.689 0.914 0.516 1.2e-150
UNIPROTKB|Q603F4 typA "GTP-binding protein TypA" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
 Score = 1659 (589.1 bits), Expect = 1.2e-170, P = 1.2e-170
 Identities = 322/560 (57%), Positives = 423/560 (75%)

Query:   204 IDKLTLDKNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFS 263
             ++KL   +NIAIIAHVDHGKTTL+D LL+QSGTF  ++ +  R+MDSN++EKERGITI +
Sbjct:     2 VEKL---RNIAIIAHVDHGKTTLVDKLLQQSGTFAAHERVGERVMDSNDLEKERGITILA 58

Query:   264 KNCSIEYNGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALK 323
             KN +I++   RINI+DTPGHADFGGEVER+LSMVD+VLLL+DAV+GPMPQTRFVT+KA  
Sbjct:    59 KNTAIKWRDYRINIVDTPGHADFGGEVERVLSMVDSVLLLVDAVDGPMPQTRFVTQKAFA 118

Query:   324 LGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKA 383
             +G  PIV++NKIDR  AR  WV+D TFDLFD+L ATE QLDFPVIY SAL+GYA  +   
Sbjct:   119 MGLHPIVLINKIDRPGARAAWVLDQTFDLFDRLGATEAQLDFPVIYCSALNGYAGLSPDI 178

Query:   384 RQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVV 443
              +G + PLFEAI+ +V     +++ P Q+Q+ SL+Y+SY+G IGIGRI  G +K    V 
Sbjct:   179 SEGTLEPLFEAIVNHVSPPDVDTDGPFQMQVSSLDYNSYVGVIGIGRITRGTVKRNTPVT 238

Query:   444 IMNGPDDKPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGL 503
             ++   D + + A+I Q+  F GL+R+   EA +GDI+  TGIE + I  T+C       L
Sbjct:   239 LIKR-DGRQSAARILQVLAFHGLERIEREEANAGDIIAFTGIEGLEISDTLCAVGFAEQL 297

Query:   504 PMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIY 563
             P L +DEPT+++ F VNNSP AGREGKF+T+RQI++RL+ E+ +N+ LRV      D  +
Sbjct:   298 PPLTVDEPTVSMTFQVNNSPFAGREGKFLTSRQIRDRLNRELIHNVALRVEDTADPDK-F 356

Query:   564 EVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIM 623
              VSGRGELHL+ILIENMRREGYEL+VSRP VI + ++GE  EPYE + +++EE +QG +M
Sbjct:   357 TVSGRGELHLSILIENMRREGYELAVSRPEVIIREIDGEPCEPYEFVTIEVEETHQGAVM 416

Query:   624 QKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFY 683
             +KL  R GDL+N+  + + RVRLEY IPSRGLIGFQ EF+T T GTGL+ HVF+ Y P  
Sbjct:   417 EKLGERKGDLRNMVPDGQGRVRLEYLIPSRGLIGFQTEFLTTTSGTGLLYHVFDHYGPIK 476

Query:   684 NKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDL 743
               +   +G+R NG LIS  +GKA+A+SL+ LQ+RGRLF+ H D VYEGM++G+H+R NDL
Sbjct:   477 RGA---IGQRTNGALISNTTGKALAFSLFNLQERGRLFVEHGDEVYEGMVVGVHTRGNDL 533

Query:   744 LVNPIKEKQLTNIRSSGSDE 763
             +VNP K KQLTNIR++GSDE
Sbjct:   534 VVNPTKAKQLTNIRAAGSDE 553
GO:0008150 "biological_process" evidence=ND
TIGR_CMR|SO_4408 SO_4408 "virulence regulator BipA" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2744 VC_2744 "GTP-binding protein TypA" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P32132 typA "protein possibly involved in ribosome structure or function" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0884 CBU_0884 "virulence regulator BipA" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q489A8 typA "GTP-binding protein TypA" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0606 CPS_0606 "GTP-binding protein TypA" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q88AM8 typA "GTP-binding protein TypA" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] Back     alignment and assigned GO terms
UNIPROTKB|Q74FV3 typA "Translation-regulating membrane GTPase TypA" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0500 GSU_0500 "GTP-binding protein TypA" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0A3B1TYPA_ECOL6No assigned EC number0.55390.70610.9225yesN/A
P0A3B2TYPA_ECO27No assigned EC number0.55390.70610.9225yesN/A
P0A3B4TYPA_SHIFLNo assigned EC number0.55390.70610.9225yesN/A
P57508TYPA_BUCAINo assigned EC number0.55570.70610.9225yesN/A
P44910TYPA_HAEINNo assigned EC number0.55120.70610.9090yesN/A
Q89AC9TYPA_BUCBPNo assigned EC number0.55550.71620.9296yesN/A
Q9ZLZ3TYPA_HELPJNo assigned EC number0.50620.69350.9181yesN/A
Q8K9C8TYPA_BUCAPNo assigned EC number0.55040.70610.9195yesN/A
O07631TYPA_BACSUNo assigned EC number0.50170.72500.9395yesN/A
O25225TYPA_HELPYNo assigned EC number0.50620.69350.9181yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.4.990.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query793
COG1217603 COG1217, TypA, Predicted membrane GTPase involved 0.0
TIGR01394594 TIGR01394, TypA_BipA, GTP-binding protein TypA/Bip 0.0
PRK10218607 PRK10218, PRK10218, GTP-binding protein; Provision 0.0
cd01891194 cd01891, TypA_BipA, Tyrosine phosphorylated protei 1e-120
PRK05033312 PRK05033, truB, tRNA pseudouridine synthase B; Pro 3e-97
cd02573213 cd02573, PseudoU_synth_EcTruB, Pseudouridine synth 2e-93
PRK01851303 PRK01851, truB, tRNA pseudouridine synthase B; Pro 3e-93
TIGR00431209 TIGR00431, TruB, tRNA pseudouridine(55) synthase 2e-78
pfam01509149 pfam01509, TruB_N, TruB family pseudouridylate syn 1e-70
pfam00009184 pfam00009, GTP_EFTU, Elongation factor Tu GTP bind 2e-66
PRK00130290 PRK00130, truB, tRNA pseudouridine synthase B; Pro 4e-65
COG0130271 COG0130, TruB, Pseudouridine synthase [Translation 3e-60
PRK00020244 PRK00020, truB, tRNA pseudouridine synthase B; Pro 6e-59
PRK04642300 PRK04642, truB, tRNA pseudouridine synthase B; Pro 2e-57
PRK01550304 PRK01550, truB, tRNA pseudouridine synthase B; Pro 9e-56
cd00506210 cd00506, PseudoU_synth_TruB_like, Pseudouridine sy 1e-55
PRK00989230 PRK00989, truB, tRNA pseudouridine synthase B; Pro 4e-55
TIGR00490720 TIGR00490, aEF-2, translation elongation factor aE 1e-54
cd00881183 cd00881, GTP_translation_factor, GTP translation f 1e-52
PRK02484294 PRK02484, truB, tRNA pseudouridine synthase B; Pro 8e-52
PRK07560731 PRK07560, PRK07560, elongation factor EF-2; Review 7e-51
PRK02755295 PRK02755, truB, tRNA pseudouridine synthase B; Pro 1e-50
PRK05389305 PRK05389, truB, tRNA pseudouridine synthase B; Pro 1e-50
PRK14123305 PRK14123, PRK14123, tRNA pseudouridine synthase B; 3e-47
PRK14124308 PRK14124, PRK14124, tRNA pseudouridine synthase B; 4e-46
PRK04099273 PRK04099, truB, tRNA pseudouridine synthase B; Pro 3e-44
cd01885218 cd01885, EF2, Elongation Factor 2 (EF2) in archaea 6e-43
PRK02193279 PRK02193, truB, tRNA pseudouridine synthase B; Pro 2e-40
COG0480 697 COG0480, FusA, Translation elongation factors (GTP 7e-40
cd04168237 cd04168, TetM_like, Tet(M)-like family includes Te 2e-39
COG0481603 COG0481, LepA, Membrane GTPase LepA [Cell envelope 4e-39
PRK03287298 PRK03287, truB, tRNA pseudouridine synthase B; Pro 2e-38
cd01890179 cd01890, LepA, LepA also known as Elongation Facto 5e-38
PRK05433600 PRK05433, PRK05433, GTP-binding protein LepA; Prov 4e-37
PRK14122312 PRK14122, PRK14122, tRNA pseudouridine synthase B; 2e-36
TIGR01393595 TIGR01393, lepA, GTP-binding protein LepA 5e-36
cd01886270 cd01886, EF-G, Elongation factor G (EF-G) family i 5e-35
PRK01528292 PRK01528, truB, tRNA pseudouridine synthase B; Pro 4e-34
PRK04270300 PRK04270, PRK04270, H/ACA RNA-protein complex comp 2e-33
cd02867312 cd02867, PseudoU_synth_TruB_4, Pseudouridine synth 4e-33
PRK13351 687 PRK13351, PRK13351, elongation factor G; Reviewed 4e-33
PRK14846345 PRK14846, truB, tRNA pseudouridine synthase B; Pro 3e-32
cd0371079 cd03710, BipA_TypA_C, BipA_TypA_C: a C-terminal po 4e-32
PRK12740668 PRK12740, PRK12740, elongation factor G; Reviewed 1e-31
cd02572182 cd02572, PseudoU_synth_hDyskerin, Pseudouridine sy 5e-31
TIGR00484689 TIGR00484, EF-G, translation elongation factor EF- 9e-31
PTZ00416 836 PTZ00416, PTZ00416, elongation factor 2; Provision 1e-30
TIGR00425322 TIGR00425, CBF5, rRNA pseudouridine synthase, puta 2e-29
cd0369186 cd03691, BipA_TypA_II, BipA_TypA_II: domain II of 3e-28
cd04167213 cd04167, Snu114p, Snu114p, a spliceosome protein, 4e-28
cd04170268 cd04170, EF-G_bact, Elongation factor G (EF-G) fam 1e-27
PLN00116 843 PLN00116, PLN00116, translation elongation factor 1e-27
PRK12739691 PRK12739, PRK12739, elongation factor G; Reviewed 3e-27
cd04169268 cd04169, RF3, Release Factor 3 (RF3) protein invol 4e-27
PRK00007 693 PRK00007, PRK00007, elongation factor G; Reviewed 9e-27
COG5256428 COG5256, TEF1, Translation elongation factor EF-1a 2e-26
PLN03127447 PLN03127, PLN03127, Elongation factor Tu; Provisio 2e-24
COG4108528 COG4108, PrfC, Peptide chain release factor RF-3 [ 3e-24
PRK00741526 PRK00741, prfC, peptide chain release factor 3; Pr 2e-22
TIGR00483426 TIGR00483, EF-1_alpha, translation elongation fact 8e-22
TIGR00485394 TIGR00485, EF-Tu, translation elongation factor TU 4e-21
PRK12317425 PRK12317, PRK12317, elongation factor 1-alpha; Rev 5e-21
COG0050394 COG0050, TufB, GTPases - translation elongation fa 3e-20
pfam0067989 pfam00679, EFG_C, Elongation factor G C-terminus 3e-20
cd01883219 cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1 8e-20
cd01887169 cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ euk 2e-19
TIGR00503527 TIGR00503, prfC, peptide chain release factor 3 3e-19
PRK12740668 PRK12740, PRK12740, elongation factor G; Reviewed 4e-18
COG0480697 COG0480, FusA, Translation elongation factors (GTP 5e-18
CHL00071409 CHL00071, tufA, elongation factor Tu 6e-18
cd0151479 cd01514, Elongation_Factor_C, Elongation factor G 8e-18
cd04171170 cd04171, SelB, SelB, the dedicated elongation fact 1e-17
PRK13351687 PRK13351, PRK13351, elongation factor G; Reviewed 2e-17
PRK12736394 PRK12736, PRK12736, elongation factor Tu; Reviewed 3e-17
PLN03126478 PLN03126, PLN03126, Elongation factor Tu; Provisio 1e-16
COG2895431 COG2895, CysN, GTPases - Sulfate adenylate transfe 1e-16
TIGR00231162 TIGR00231, small_GTP, small GTP-binding protein do 2e-15
PRK12735396 PRK12735, PRK12735, elongation factor Tu; Reviewed 3e-15
TIGR00475581 TIGR00475, selB, selenocysteine-specific elongatio 1e-14
cd01884195 cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-b 4e-14
cd00882161 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s 7e-14
cd04166209 cd04166, CysN_ATPS, CysN, together with protein Cy 1e-13
PRK00049396 PRK00049, PRK00049, elongation factor Tu; Reviewed 2e-13
TIGR02034406 TIGR02034, CysN, sulfate adenylyltransferase, larg 2e-12
PRK05306746 PRK05306, infB, translation initiation factor IF-2 3e-12
COG5257415 COG5257, GCD11, Translation initiation factor 2, g 4e-12
COG0532509 COG0532, InfB, Translation initiation factor 2 (IF 4e-12
PLN00043447 PLN00043, PLN00043, elongation factor 1-alpha; Pro 4e-12
TIGR00487587 TIGR00487, IF-2, translation initiation factor IF- 6e-12
PTZ00141446 PTZ00141, PTZ00141, elongation factor 1- alpha; Pr 3e-11
PRK05124474 PRK05124, cysN, sulfate adenylyltransferase subuni 3e-11
TIGR03680406 TIGR03680, eif2g_arch, translation initiation fact 4e-11
COG3276447 COG3276, SelB, Selenocysteine-specific translation 7e-11
cd01889192 cd01889, SelB_euk, SelB, the dedicated elongation 1e-10
CHL00189742 CHL00189, infB, translation initiation factor 2; P 2e-10
cd01888197 cd01888, eIF2_gamma, Gamma subunit of initiation f 2e-10
cd0134283 cd01342, Translation_Factor_II_like, Translation_F 3e-10
PRK05506632 PRK05506, PRK05506, bifunctional sulfate adenylylt 8e-10
TIGR00491590 TIGR00491, aIF-2, translation initiation factor aI 2e-09
PRK04000411 PRK04000, PRK04000, translation initiation factor 2e-09
PRK04004586 PRK04004, PRK04004, translation initiation factor 3e-09
cd0370093 cd03700, eEF2_snRNP_like_II, EF2_snRNP_like_II: th 9e-09
pfam0314470 pfam03144, GTP_EFTU_D2, Elongation factor Tu domai 1e-08
TIGR00484689 TIGR00484, EF-G, translation elongation factor EF- 2e-08
cd0408883 cd04088, EFG_mtEFG_II, EFG_mtEFG_II: this subfamil 2e-08
PRK10512614 PRK10512, PRK10512, selenocysteinyl-tRNA-specific 4e-08
cd02868226 cd02868, PseudoU_synth_hTruB2_like, Pseudouridine 2e-07
cd09912180 cd09912, DLP_2, Dynamin-like protein including dyn 4e-07
TIGR03594429 TIGR03594, GTPase_EngA, ribosome-associated GTPase 5e-07
cd01895174 cd01895, EngA2, EngA2 GTPase contains the second d 7e-07
PRK00089292 PRK00089, era, GTPase Era; Reviewed 1e-06
cd04163168 cd04163, Era, E 5e-06
cd01859157 cd01859, MJ1464, An uncharacterized, circularly pe 6e-06
cd01894157 cd01894, EngA1, EngA1 GTPase contains the first do 7e-06
PRK00093435 PRK00093, PRK00093, GTP-binding protein Der; Revie 9e-06
TIGR03918391 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster 9e-06
TIGR03594429 TIGR03594, GTPase_EngA, ribosome-associated GTPase 1e-05
COG1160444 COG1160, COG1160, Predicted GTPases [General funct 1e-05
COG1159298 COG1159, Era, GTPase [General function prediction 2e-05
cd0371178 cd03711, Tet_C, Tet_C: C-terminus of ribosomal pro 6e-05
PRK12739691 PRK12739, PRK12739, elongation factor G; Reviewed 8e-05
PRK00093435 PRK00093, PRK00093, GTP-binding protein Der; Revie 2e-04
COG1160444 COG1160, COG1160, Predicted GTPases [General funct 2e-04
cd0369085 cd03690, Tet_II, Tet_II: This subfamily represents 2e-04
cd00880161 cd00880, Era_like, E 2e-04
COG5258527 COG5258, GTPBP1, GTPase [General function predicti 4e-04
PRK00007693 PRK00007, PRK00007, elongation factor G; Reviewed 0.001
cd0409094 cd04090, eEF2_II_snRNP, Loc2 eEF2_C_snRNP, cd01514 0.001
pfam01926117 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase 0.002
cd01854211 cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y 0.004
>gnl|CDD|224138 COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] Back     alignment and domain information 
 Score =  904 bits (2339), Expect = 0.0
 Identities = 328/565 (58%), Positives = 434/565 (76%), Gaps = 6/565 (1%)

Query: 211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEY 270
           +NIAIIAHVDHGKTTL+D LL+QSGTFR+ + +  R+MDSN++EKERGITI +KN ++ Y
Sbjct: 6   RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY 65

Query: 271 NGTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIV 330
           NGTRINI+DTPGHADFGGEVER+LSMVD VLLL+DA EGPMPQTRFV +KAL LG KPIV
Sbjct: 66  NGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIV 125

Query: 331 VVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNMIP 390
           V+NKIDR +ARP+ VVD  FDLF +L AT+EQLDFP++Y SA +G A+ + +    +M P
Sbjct: 126 VINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAP 185

Query: 391 LFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD 450
           LFE IL +VP  K + + PLQ+Q+  L+Y+SY+G+IGIGRI  G +K  Q V ++   D 
Sbjct: 186 LFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKS-DG 244

Query: 451 KPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDE 510
                +I ++  F GL+R+ + EA +GDIV I G+E+I IG TICDP  P  LP L++DE
Sbjct: 245 TTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTICDPDNPEALPALSVDE 304

Query: 511 PTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGE 570
           PTL++ F VN+SP AG+EGKF+T+RQI++RL+ E++ N+ LRV + +  D+ +EVSGRGE
Sbjct: 305 PTLSMTFSVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDA-FEVSGRGE 363

Query: 571 LHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRG 630
           LHL+ILIENMRREG+EL VSRP VI K ++G   EP+E + +D+ E +QG +++KL  R 
Sbjct: 364 LHLSILIENMRREGFELQVSRPEVIIKEIDGVKCEPFEEVTIDVPEEHQGAVIEKLGERK 423

Query: 631 GDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDL 690
           G++K++  + K RVRLE+ IP+RGLIGF+ EF+T+TRGTG+++H F+ Y P     K ++
Sbjct: 424 GEMKDMAPDGKGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPV----KGEI 479

Query: 691 GKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKE 750
           G R NGVLIS  +GKAVAY+L+ LQDRG+LFI     VYEGMIIG HSRDNDL VN +K 
Sbjct: 480 GGRHNGVLISNETGKAVAYALFNLQDRGKLFIEPGTKVYEGMIIGEHSRDNDLTVNVLKG 539

Query: 751 KQLTNIRSSGSDEAIQLINIIKIIL 775
           K+LTN+R+SG DEA+ L   I++ L
Sbjct: 540 KKLTNMRASGKDEAVTLTPPIRMTL 564

Length = 603
>gnl|CDD|233394 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA Back     alignment and domain information
>gnl|CDD|104396 PRK10218, PRK10218, GTP-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|206678 cd01891, TypA_BipA, Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases Back     alignment and domain information
>gnl|CDD|235333 PRK05033, truB, tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>gnl|CDD|211339 cd02573, PseudoU_synth_EcTruB, Pseudouridine synthase, Escherichia coli TruB like Back     alignment and domain information
>gnl|CDD|234986 PRK01851, truB, tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>gnl|CDD|129523 TIGR00431, TruB, tRNA pseudouridine(55) synthase Back     alignment and domain information
>gnl|CDD|216540 pfam01509, TruB_N, TruB family pseudouridylate synthase (N terminal domain) Back     alignment and domain information
>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain Back     alignment and domain information
>gnl|CDD|178886 PRK00130, truB, tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>gnl|CDD|223208 COG0130, TruB, Pseudouridine synthase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|134035 PRK00020, truB, tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>gnl|CDD|179870 PRK04642, truB, tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>gnl|CDD|234959 PRK01550, truB, tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>gnl|CDD|211323 cd00506, PseudoU_synth_TruB_like, Pseudouridine synthase, TruB family Back     alignment and domain information
>gnl|CDD|179199 PRK00989, truB, tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>gnl|CDD|129581 TIGR00490, aEF-2, translation elongation factor aEF-2 Back     alignment and domain information
>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors Back     alignment and domain information
>gnl|CDD|235042 PRK02484, truB, tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>gnl|CDD|236047 PRK07560, PRK07560, elongation factor EF-2; Reviewed Back     alignment and domain information
>gnl|CDD|179469 PRK02755, truB, tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>gnl|CDD|235442 PRK05389, truB, tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>gnl|CDD|184522 PRK14123, PRK14123, tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>gnl|CDD|172614 PRK14124, PRK14124, tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>gnl|CDD|179739 PRK04099, truB, tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>gnl|CDD|206672 cd01885, EF2, Elongation Factor 2 (EF2) in archaea and eukarya Back     alignment and domain information
>gnl|CDD|179381 PRK02193, truB, tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|206731 cd04168, TetM_like, Tet(M)-like family includes Tet(M), Tet(O), Tet(W), and OtrA, containing tetracycline resistant proteins Back     alignment and domain information
>gnl|CDD|223557 COG0481, LepA, Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|235113 PRK03287, truB, tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>gnl|CDD|206677 cd01890, LepA, LepA also known as Elongation Factor 4 (EF4) Back     alignment and domain information
>gnl|CDD|235462 PRK05433, PRK05433, GTP-binding protein LepA; Provisional Back     alignment and domain information
>gnl|CDD|184521 PRK14122, PRK14122, tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA Back     alignment and domain information
>gnl|CDD|206673 cd01886, EF-G, Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis Back     alignment and domain information
>gnl|CDD|179300 PRK01528, truB, tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>gnl|CDD|179806 PRK04270, PRK04270, H/ACA RNA-protein complex component Cbf5p; Reviewed Back     alignment and domain information
>gnl|CDD|211344 cd02867, PseudoU_synth_TruB_4, Pseudouridine synthase homolog 4 Back     alignment and domain information
>gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed Back     alignment and domain information
>gnl|CDD|237834 PRK14846, truB, tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>gnl|CDD|239681 cd03710, BipA_TypA_C, BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2 Back     alignment and domain information
>gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed Back     alignment and domain information
>gnl|CDD|211338 cd02572, PseudoU_synth_hDyskerin, Pseudouridine synthase, human dyskerin like Back     alignment and domain information
>gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G Back     alignment and domain information
>gnl|CDD|240409 PTZ00416, PTZ00416, elongation factor 2; Provisional Back     alignment and domain information
>gnl|CDD|232971 TIGR00425, CBF5, rRNA pseudouridine synthase, putative Back     alignment and domain information
>gnl|CDD|239662 cd03691, BipA_TypA_II, BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu Back     alignment and domain information
>gnl|CDD|206730 cd04167, Snu114p, Snu114p, a spliceosome protein, is a GTPase Back     alignment and domain information
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family Back     alignment and domain information
>gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit; Provisional Back     alignment and domain information
>gnl|CDD|237185 PRK12739, PRK12739, elongation factor G; Reviewed Back     alignment and domain information
>gnl|CDD|206732 cd04169, RF3, Release Factor 3 (RF3) protein involved in the terminal step of translocation in bacteria Back     alignment and domain information
>gnl|CDD|234569 PRK00007, PRK00007, elongation factor G; Reviewed Back     alignment and domain information
>gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|178673 PLN03127, PLN03127, Elongation factor Tu; Provisional Back     alignment and domain information
>gnl|CDD|226593 COG4108, PrfC, Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|179105 PRK00741, prfC, peptide chain release factor 3; Provisional Back     alignment and domain information
>gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha Back     alignment and domain information
>gnl|CDD|129576 TIGR00485, EF-Tu, translation elongation factor TU Back     alignment and domain information
>gnl|CDD|237055 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed Back     alignment and domain information
>gnl|CDD|223128 COG0050, TufB, GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|201388 pfam00679, EFG_C, Elongation factor G C-terminus Back     alignment and domain information
>gnl|CDD|206670 cd01883, EF1_alpha, Elongation Factor 1-alpha (EF1-alpha) protein family Back     alignment and domain information
>gnl|CDD|206674 cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family Back     alignment and domain information
>gnl|CDD|129594 TIGR00503, prfC, peptide chain release factor 3 Back     alignment and domain information
>gnl|CDD|237186 PRK12740, PRK12740, elongation factor G; Reviewed Back     alignment and domain information
>gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|177010 CHL00071, tufA, elongation factor Tu Back     alignment and domain information
>gnl|CDD|238772 cd01514, Elongation_Factor_C, Elongation factor G C-terminus Back     alignment and domain information
>gnl|CDD|206734 cd04171, SelB, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome Back     alignment and domain information
>gnl|CDD|237358 PRK13351, PRK13351, elongation factor G; Reviewed Back     alignment and domain information
>gnl|CDD|237184 PRK12736, PRK12736, elongation factor Tu; Reviewed Back     alignment and domain information
>gnl|CDD|215592 PLN03126, PLN03126, Elongation factor Tu; Provisional Back     alignment and domain information
>gnl|CDD|225448 COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain Back     alignment and domain information
>gnl|CDD|183708 PRK12735, PRK12735, elongation factor Tu; Reviewed Back     alignment and domain information
>gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB Back     alignment and domain information
>gnl|CDD|206671 cd01884, EF_Tu, Elongation Factor Tu (EF-Tu) GTP-binding proteins Back     alignment and domain information
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) Back     alignment and domain information
>gnl|CDD|206729 cd04166, CysN_ATPS, CysN, together with protein CysD, forms the ATP sulfurylase (ATPS) complex Back     alignment and domain information
>gnl|CDD|234596 PRK00049, PRK00049, elongation factor Tu; Reviewed Back     alignment and domain information
>gnl|CDD|213679 TIGR02034, CysN, sulfate adenylyltransferase, large subunit Back     alignment and domain information
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated Back     alignment and domain information
>gnl|CDD|227582 COG5257, GCD11, Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|223606 COG0532, InfB, Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|165621 PLN00043, PLN00043, elongation factor 1-alpha; Provisional Back     alignment and domain information
>gnl|CDD|232995 TIGR00487, IF-2, translation initiation factor IF-2 Back     alignment and domain information
>gnl|CDD|185474 PTZ00141, PTZ00141, elongation factor 1- alpha; Provisional Back     alignment and domain information
>gnl|CDD|235349 PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional Back     alignment and domain information
>gnl|CDD|211860 TIGR03680, eif2g_arch, translation initiation factor 2 subunit gamma Back     alignment and domain information
>gnl|CDD|225815 COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|206676 cd01889, SelB_euk, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome Back     alignment and domain information
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional Back     alignment and domain information
>gnl|CDD|206675 cd01888, eIF2_gamma, Gamma subunit of initiation factor 2 (eIF2 gamma) Back     alignment and domain information
>gnl|CDD|238652 cd01342, Translation_Factor_II_like, Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins Back     alignment and domain information
>gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional Back     alignment and domain information
>gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2 Back     alignment and domain information
>gnl|CDD|235194 PRK04000, PRK04000, translation initiation factor IF-2 subunit gamma; Validated Back     alignment and domain information
>gnl|CDD|235195 PRK04004, PRK04004, translation initiation factor IF-2; Validated Back     alignment and domain information
>gnl|CDD|239671 cd03700, eEF2_snRNP_like_II, EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p Back     alignment and domain information
>gnl|CDD|217388 pfam03144, GTP_EFTU_D2, Elongation factor Tu domain 2 Back     alignment and domain information
>gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G Back     alignment and domain information
>gnl|CDD|239755 cd04088, EFG_mtEFG_II, EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes Back     alignment and domain information
>gnl|CDD|182508 PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional Back     alignment and domain information
>gnl|CDD|211345 cd02868, PseudoU_synth_hTruB2_like, Pseudouridine synthase, humanTRUB2_like Back     alignment and domain information
>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins Back     alignment and domain information
>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA Back     alignment and domain information
>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA Back     alignment and domain information
>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed Back     alignment and domain information
>gnl|CDD|206726 cd04163, Era, E Back     alignment and domain information
>gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases Back     alignment and domain information
>gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA Back     alignment and domain information
>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed Back     alignment and domain information
>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF Back     alignment and domain information
>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA Back     alignment and domain information
>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] Back     alignment and domain information
>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only] Back     alignment and domain information
>gnl|CDD|239682 cd03711, Tet_C, Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O) Back     alignment and domain information
>gnl|CDD|237185 PRK12739, PRK12739, elongation factor G; Reviewed Back     alignment and domain information
>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed Back     alignment and domain information
>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] Back     alignment and domain information
>gnl|CDD|239661 cd03690, Tet_II, Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O) Back     alignment and domain information
>gnl|CDD|206646 cd00880, Era_like, E Back     alignment and domain information
>gnl|CDD|227583 COG5258, GTPBP1, GTPase [General function prediction only] Back     alignment and domain information
>gnl|CDD|234569 PRK00007, PRK00007, elongation factor G; Reviewed Back     alignment and domain information
>gnl|CDD|239757 cd04090, eEF2_II_snRNP, Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p Back     alignment and domain information
>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase Back     alignment and domain information
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 793
COG1217603 TypA Predicted membrane GTPase involved in stress 100.0
TIGR01394594 TypA_BipA GTP-binding protein TypA/BipA. This bact 100.0
PRK10218607 GTP-binding protein; Provisional 100.0
KOG0462|consensus650 100.0
COG0480697 FusA Translation elongation factors (GTPases) [Tra 100.0
TIGR01393595 lepA GTP-binding protein LepA. LepA (GUF1 in Sacca 100.0
PRK05433600 GTP-binding protein LepA; Provisional 100.0
KOG0465|consensus721 100.0
COG0481603 LepA Membrane GTPase LepA [Cell envelope biogenesi 100.0
PRK00007693 elongation factor G; Reviewed 100.0
TIGR00484689 EF-G translation elongation factor EF-G. After pep 100.0
PRK12739691 elongation factor G; Reviewed 100.0
PRK07560731 elongation factor EF-2; Reviewed 100.0
PRK13351687 elongation factor G; Reviewed 100.0
PRK12740668 elongation factor G; Reviewed 100.0
TIGR00490720 aEF-2 translation elongation factor aEF-2. This mo 100.0
PLN00116843 translation elongation factor EF-2 subunit; Provis 100.0
PTZ00416836 elongation factor 2; Provisional 100.0
PRK00020244 truB tRNA pseudouridine synthase B; Provisional 100.0
PRK04642300 truB tRNA pseudouridine synthase B; Provisional 100.0
PRK01851303 truB tRNA pseudouridine synthase B; Provisional 100.0
TIGR00431209 TruB tRNA pseudouridine 55 synthase. TruB, the tRN 100.0
PRK00130290 truB tRNA pseudouridine synthase B; Provisional 100.0
PRK00989230 truB tRNA pseudouridine synthase B; Provisional 100.0
PRK02755295 truB tRNA pseudouridine synthase B; Provisional 100.0
PRK05033312 truB tRNA pseudouridine synthase B; Provisional 100.0
PRK02484294 truB tRNA pseudouridine synthase B; Provisional 100.0
PRK01550304 truB tRNA pseudouridine synthase B; Provisional 100.0
PRK14124308 tRNA pseudouridine synthase B; Provisional 100.0
cd00506210 PseudoU_synth_TruB_like PseudoU_synth_TruB: Pseudo 100.0
PRK05389305 truB tRNA pseudouridine synthase B; Provisional 100.0
PRK03287298 truB tRNA pseudouridine synthase B; Provisional 100.0
PRK01528292 truB tRNA pseudouridine synthase B; Provisional 100.0
PRK14123305 tRNA pseudouridine synthase B; Provisional 100.0
PRK04099273 truB tRNA pseudouridine synthase B; Provisional 100.0
PRK14846345 truB tRNA pseudouridine synthase B; Provisional 100.0
PRK14122312 tRNA pseudouridine synthase B; Provisional 100.0
cd02573277 PseudoU_synth_EcTruB PseudoU_synth_EcTruB: Pseudou 100.0
PRK02193279 truB tRNA pseudouridine synthase B; Provisional 100.0
KOG0464|consensus753 100.0
cd02867312 PseudoU_synth_TruB_4 PseudoU_synth_TruB_4: Pseudou 100.0
PRK00741526 prfC peptide chain release factor 3; Provisional 100.0
TIGR00503527 prfC peptide chain release factor 3. This translat 100.0
KOG0469|consensus842 100.0
cd02868226 PseudoU_synth_hTruB2_like PseudoU_synth_ hTRUB2_Li 100.0
COG0130271 TruB Pseudouridine synthase [Translation, ribosoma 100.0
PF01509149 TruB_N: TruB family pseudouridylate synthase (N te 100.0
cd02572182 PseudoU_synth_hDyskerin PseudoU_synth_hDyskerin_Li 100.0
TIGR00425322 CBF5 rRNA pseudouridine synthase, putative. This f 100.0
COG4108528 PrfC Peptide chain release factor RF-3 [Translatio 100.0
PRK04270300 H/ACA RNA-protein complex component Cbf5p; Reviewe 100.0
KOG0468|consensus971 100.0
KOG0467|consensus887 100.0
COG5256428 TEF1 Translation elongation factor EF-1alpha (GTPa 100.0
PLN00043447 elongation factor 1-alpha; Provisional 100.0
CHL00071409 tufA elongation factor Tu 100.0
PTZ00141446 elongation factor 1- alpha; Provisional 100.0
PRK12736394 elongation factor Tu; Reviewed 100.0
PRK12735396 elongation factor Tu; Reviewed 100.0
PRK00049396 elongation factor Tu; Reviewed 100.0
TIGR00485394 EF-Tu translation elongation factor TU. This align 100.0
PLN03126478 Elongation factor Tu; Provisional 100.0
PRK12317425 elongation factor 1-alpha; Reviewed 100.0
TIGR02034406 CysN sulfate adenylyltransferase, large subunit. H 100.0
PLN03127447 Elongation factor Tu; Provisional 100.0
KOG0460|consensus449 100.0
COG0050394 TufB GTPases - translation elongation factors [Tra 100.0
PRK05124474 cysN sulfate adenylyltransferase subunit 1; Provis 100.0
TIGR00483426 EF-1_alpha translation elongation factor EF-1 alph 100.0
PTZ00327460 eukaryotic translation initiation factor 2 gamma s 100.0
PRK05506632 bifunctional sulfate adenylyltransferase subunit 1 100.0
PRK05306787 infB translation initiation factor IF-2; Validated 100.0
PRK10512614 selenocysteinyl-tRNA-specific translation factor; 100.0
COG2895431 CysN GTPases - Sulfate adenylate transferase subun 100.0
TIGR00487587 IF-2 translation initiation factor IF-2. This mode 100.0
PRK04000411 translation initiation factor IF-2 subunit gamma; 100.0
KOG0458|consensus603 100.0
TIGR03680406 eif2g_arch translation initiation factor 2 subunit 100.0
TIGR00475581 selB selenocysteine-specific elongation factor Sel 100.0
COG3276447 SelB Selenocysteine-specific translation elongatio 99.97
CHL00189742 infB translation initiation factor 2; Provisional 99.97
KOG1145|consensus683 99.96
COG5258527 GTPBP1 GTPase [General function prediction only] 99.96
cd01885222 EF2 EF2 (for archaea and eukarya). Translocation r 99.96
PF00009188 GTP_EFTU: Elongation factor Tu GTP binding domain; 99.96
KOG0459|consensus501 99.96
cd01884195 EF_Tu EF-Tu subfamily. This subfamily includes ort 99.95
COG0532509 InfB Translation initiation factor 2 (IF-2; GTPase 99.95
cd01886270 EF-G Elongation factor G (EF-G) subfamily. Translo 99.95
cd04168237 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T 99.95
COG5257415 GCD11 Translation initiation factor 2, gamma subun 99.95
PRK04004586 translation initiation factor IF-2; Validated 99.94
cd01891194 TypA_BipA TypA (tyrosine phosphorylated protein A) 99.94
KOG0461|consensus522 99.94
cd04169267 RF3 RF3 subfamily. Peptide chain release factor 3 99.94
TIGR00491590 aIF-2 translation initiation factor aIF-2/yIF-2. T 99.93
cd01883219 EF1_alpha Eukaryotic elongation factor 1 (EF1) alp 99.93
cd04166208 CysN_ATPS CysN_ATPS subfamily. CysN, together with 99.93
cd04170268 EF-G_bact Elongation factor G (EF-G) subfamily. Tr 99.9
cd01890179 LepA LepA subfamily. LepA belongs to the GTPase fa 99.9
cd04167213 Snu114p Snu114p subfamily. Snu114p is one of sever 99.89
KOG2559|consensus318 99.89
PRK148451049 translation initiation factor IF-2; Provisional 99.88
cd01889192 SelB_euk SelB subfamily. SelB is an elongation fac 99.88
cd01888203 eIF2_gamma eIF2-gamma (gamma subunit of initiation 99.88
COG0486454 ThdF Predicted GTPase [General function prediction 99.87
cd04165224 GTPBP1_like GTPBP1-like. Mammalian GTP binding pro 99.86
cd00881189 GTP_translation_factor GTP translation factor fami 99.86
cd04171164 SelB SelB subfamily. SelB is an elongation factor 99.82
cd0370980 lepA_C lepA_C: This family represents the C-termin 99.82
PRK05291449 trmE tRNA modification GTPase TrmE; Reviewed 99.81
KOG2529|consensus395 99.81
PF0067989 EFG_C: Elongation factor G C-terminus; InterPro: I 99.81
cd0371079 BipA_TypA_C BipA_TypA_C: a C-terminal portion of B 99.81
KOG0463|consensus641 99.81
smart0083885 EFG_C Elongation factor G C-terminus. This domain 99.81
cd0409778 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elo 99.8
cd0371178 Tet_C Tet_C: C-terminus of ribosomal protection pr 99.8
COG1160444 Predicted GTPases [General function prediction onl 99.79
TIGR00450442 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE 99.79
cd01887168 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo 99.78
cd0409680 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family r 99.78
cd0409880 eEF2_C_snRNP eEF2_C_snRNP: This family includes a 99.77
KOG1143|consensus591 99.77
cd0371378 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C- 99.77
KOG0466|consensus466 99.77
COG1159298 Era GTPase [General function prediction only] 99.77
COG1160444 Predicted GTPases [General function prediction onl 99.76
cd0151479 Elongation_Factor_C Elongation factor G C-terminus 99.75
cd01894157 EngA1 EngA1 subfamily. This CD represents the firs 99.75
PF02421156 FeoB_N: Ferrous iron transport protein B; InterPro 99.74
TIGR03594429 GTPase_EngA ribosome-associated GTPase EngA. EngA 99.74
KOG1144|consensus1064 99.74
TIGR00436270 era GTP-binding protein Era. Era is an essential G 99.74
cd04160167 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote 99.73
PRK00093435 GTP-binding protein Der; Reviewed 99.73
PRK15494339 era GTPase Era; Provisional 99.72
TIGR03594429 GTPase_EngA ribosome-associated GTPase EngA. EngA 99.71
cd01895174 EngA2 EngA2 subfamily. This CD represents the seco 99.7
PRK03003472 GTP-binding protein Der; Reviewed 99.68
PRK03003472 GTP-binding protein Der; Reviewed 99.68
cd01898170 Obg Obg subfamily. The Obg nucleotide binding prot 99.67
cd01879158 FeoB Ferrous iron transport protein B (FeoB) subfa 99.67
cd04164157 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein 99.66
PRK00089292 era GTPase Era; Reviewed 99.66
cd01897168 NOG NOG1 is a nucleolar GTP-binding protein presen 99.66
cd0369085 Tet_II Tet_II: This subfamily represents domain II 99.65
TIGR03156351 GTP_HflX GTP-binding protein HflX. This protein fa 99.65
cd04157162 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub 99.65
cd04154173 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are 99.65
cd01864165 Rab19 Rab19 subfamily. Rab19 proteins are associat 99.65
PRK00093435 GTP-binding protein Der; Reviewed 99.64
PRK09518712 bifunctional cytidylate kinase/GTPase Der; Reviewe 99.64
cd04124161 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily 99.63
PRK15467158 ethanolamine utilization protein EutP; Provisional 99.63
PRK09518712 bifunctional cytidylate kinase/GTPase Der; Reviewe 99.63
cd04151158 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t 99.62
cd04145164 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf 99.62
cd01860163 Rab5_related Rab5-related subfamily. This subfamil 99.62
cd04163168 Era Era subfamily. Era (E. coli Ras-like protein) 99.61
cd00878158 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik 99.61
cd01878204 HflX HflX subfamily. A distinct conserved domain w 99.61
PRK09554 772 feoB ferrous iron transport protein B; Reviewed 99.6
cd04152183 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i 99.6
cd01861161 Rab6 Rab6 subfamily. Rab6 is involved in microtubu 99.6
cd0409283 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondri 99.6
cd04113161 Rab4 Rab4 subfamily. Rab4 has been implicated in n 99.6
KOG1191|consensus531 99.6
TIGR00231161 small_GTP small GTP-binding protein domain. This m 99.6
smart00173164 RAS Ras subfamily of RAS small GTPases. Similar in 99.6
cd00880163 Era_like Era (E. coli Ras-like protein)-like. This 99.6
TIGR03598179 GTPase_YsxC ribosome biogenesis GTP-binding protei 99.59
cd00879190 Sar1 Sar1 subfamily. Sar1 is an essential componen 99.59
cd04106162 Rab23_lke Rab23-like subfamily. Rab23 is a member 99.59
PRK11058426 GTPase HflX; Provisional 99.59
smart00175164 RAB Rab subfamily of small GTPases. Rab GTPases ar 99.58
cd00154159 Rab Rab family. Rab GTPases form the largest famil 99.58
cd04138162 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, 99.58
cd04114169 Rab30 Rab30 subfamily. Rab30 appears to be associa 99.58
cd04147198 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v 99.58
cd04158169 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor 99.58
PRK04213201 GTP-binding protein; Provisional 99.58
cd04161167 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( 99.58
cd01862172 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th 99.57
smart00178184 SAR Sar1p-like members of the Ras-family of small 99.57
PRK12298390 obgE GTPase CgtA; Reviewed 99.57
PRK12299335 obgE GTPase CgtA; Reviewed 99.57
cd01866168 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg 99.57
cd01863161 Rab18 Rab18 subfamily. Mammalian Rab18 is implicat 99.57
COG2229187 Predicted GTPase [General function prediction only 99.57
cd01881176 Obg_like The Obg-like subfamily consists of five w 99.57
cd04153174 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a 99.56
cd01865165 Rab3 Rab3 subfamily. The Rab3 subfamily contains R 99.56
cd0408883 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represen 99.56
cd04149168 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 99.56
cd04155173 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f 99.56
cd04140165 ARHI_like ARHI subfamily. ARHI (A Ras homolog memb 99.56
cd0368985 RF3_II RF3_II: this subfamily represents the domai 99.56
cd04119168 RJL RJL (RabJ-Like) subfamily. RJLs are found in m 99.56
cd0369186 BipA_TypA_II BipA_TypA_II: domain II of BipA (also 99.56
PTZ00369189 Ras-like protein; Provisional 99.55
PRK00454196 engB GTP-binding protein YsxC; Reviewed 99.55
cd04139164 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) 99.55
cd01869166 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev 99.55
PLN03118211 Rab family protein; Provisional 99.55
cd04175164 Rap1 Rap1 subgroup. The Rap1 subgroup is part of t 99.55
cd04150159 Arf1_5_like Arf1-Arf5-like subfamily. This subfami 99.55
cd01868165 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a 99.55
TIGR02729329 Obg_CgtA Obg family GTPase CgtA. This model descri 99.55
cd04159159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was id 99.55
PRK12296500 obgE GTPase CgtA; Reviewed 99.55
cd00877166 Ran Ran (Ras-related nuclear proteins) /TC4 subfam 99.55
cd04136163 Rap_like Rap-like subfamily. The Rap subfamily con 99.55
cd01867167 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp 99.54
cd04177168 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the 99.54
cd04156160 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su 99.54
cd04107201 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 99.54
cd00876160 Ras Ras family. The Ras family of the Ras superfam 99.53
cd01893166 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr 99.53
TIGR02528142 EutP ethanolamine utilization protein, EutP. This 99.53
smart00177175 ARF ARF-like small GTPases; ARF, ADP-ribosylation 99.53
cd04112191 Rab26 Rab26 subfamily. First identified in rat pan 99.53
cd04122166 Rab14 Rab14 subfamily. Rab14 GTPases are localized 99.52
cd04142198 RRP22 RRP22 subfamily. RRP22 (Ras-related protein 99.52
cd04116170 Rab9 Rab9 subfamily. Rab9 is found in late endosom 99.52
cd0409181 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondri 99.52
cd04144190 Ras2 Ras2 subfamily. The Ras2 subfamily, found exc 99.52
cd04162164 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 99.52
PRK12297424 obgE GTPase CgtA; Reviewed 99.52
cd04137180 RheB Rheb (Ras Homolog Enriched in Brain) subfamil 99.52
cd04120202 Rab12 Rab12 subfamily. Rab12 was first identified 99.51
cd04176163 Rap2 Rap2 subgroup. The Rap2 subgroup is part of t 99.51
cd04115170 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u 99.51
cd04123162 Rab21 Rab21 subfamily. The localization and functi 99.51
PLN00223181 ADP-ribosylation factor; Provisional 99.51
cd04135174 Tc10 TC10 subfamily. TC10 is a Rho family protein 99.51
cd04127180 Rab27A Rab27a subfamily. The Rab27a subfamily cons 99.51
KOG1423|consensus379 99.5
cd00157171 Rho Rho (Ras homology) family. Members of the Rho 99.5
cd0369986 lepA_II lepA_II: This subfamily represents the dom 99.5
cd04146165 RERG_RasL11_like RERG/RasL11-like subfamily. RERG 99.5
cd04141172 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p 99.5
cd04118193 Rab24 Rab24 subfamily. Rab24 is distinct from othe 99.49
PTZ00133182 ADP-ribosylation factor; Provisional 99.49
PF1449275 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_ 99.49
cd04101164 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove 99.49
cd04110199 Rab35 Rab35 subfamily. Rab35 is one of several Rab 99.49
TIGR00437591 feoB ferrous iron transporter FeoB. FeoB (773 amin 99.48
cd04109215 Rab28 Rab28 subfamily. First identified in maize, 99.48
cd04134189 Rho3 Rho3 subfamily. Rho3 is a member of the Rho f 99.48
COG0218200 Predicted GTPase [General function prediction only 99.48
cd04108170 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr 99.47
cd04125188 RabA_like RabA-like subfamily. RabA was first iden 99.47
smart00174174 RHO Rho (Ras homology) subfamily of Ras-like small 99.47
cd04126220 Rab20 Rab20 subfamily. Rab20 is one of several Rab 99.47
PLN03071219 GTP-binding nuclear protein Ran; Provisional 99.47
cd00882157 Ras_like_GTPase Ras-like GTPase superfamily. The R 99.46
cd04121189 Rab40 Rab40 subfamily. This subfamily contains Rab 99.46
PLN03110216 Rab GTPase; Provisional 99.46
cd01882225 BMS1 Bms1. Bms1 is an essential, evolutionarily co 99.46
cd04143247 Rhes_like Rhes_like subfamily. This subfamily incl 99.45
cd04128182 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi 99.45
cd01871174 Rac1_like Rac1-like subfamily. The Rac1-like subfa 99.45
cd01874175 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas 99.45
smart00176200 RAN Ran (Ras-related nuclear proteins) /TC4 subfam 99.45
PF10662143 PduV-EutP: Ethanolamine utilisation - propanediol 99.44
cd01876170 YihA_EngB The YihA (EngB) subfamily. This subfamil 99.44
cd04132187 Rho4_like Rho4-like subfamily. Rho4 is a GTPase th 99.44
PF00025175 Arf: ADP-ribosylation factor family The prints ent 99.43
cd04130173 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive 99.43
cd01875191 RhoG RhoG subfamily. RhoG is a GTPase with high se 99.42
cd01870175 RhoA_like RhoA-like subfamily. The RhoA subfamily 99.42
PLN03108210 Rab family protein; Provisional 99.42
cd04133176 Rop_like Rop subfamily. The Rop (Rho-related prote 99.42
cd04117161 Rab15 Rab15 subfamily. Rab15 colocalizes with the 99.41
cd01892169 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr 99.41
KOG0073|consensus185 99.4
PF01926116 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I 99.4
cd04111211 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 99.4
COG1084346 Predicted GTPase [General function prediction only 99.38
cd01896233 DRG The developmentally regulated GTP-binding prot 99.38
COG0370653 FeoB Fe2+ transport system protein B [Inorganic io 99.37
cd04172182 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE 99.37
cd04131178 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 99.36
cd04148221 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki 99.36
COG2262411 HflX GTPases [General function prediction only] 99.36
KOG0092|consensus200 99.35
cd04104197 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase 99.35
KOG1489|consensus366 99.34
KOG0094|consensus221 99.34
cd0370093 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfami 99.33
cd0409094 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C termina 99.33
cd04174232 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb 99.33
cd04103158 Centaurin_gamma Centaurin gamma. The centaurins (a 99.32
KOG0075|consensus186 99.3
KOG0084|consensus205 99.28
PRK09866741 hypothetical protein; Provisional 99.28
cd04129187 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that 99.27
cd04105203 SR_beta Signal recognition particle receptor, beta 99.27
cd01852196 AIG1 AIG1 (avrRpt2-induced gene 1). This represent 99.25
PTZ00132215 GTP-binding nuclear protein Ran; Provisional 99.24
COG3596296 Predicted GTPase [General function prediction only 99.24
cd04173222 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb 99.23
PF00071162 Ras: Ras family; InterPro: IPR001806 Small GTPases 99.23
KOG0078|consensus207 99.19
cd01873195 RhoBTB RhoBTB subfamily. Members of the RhoBTB sub 99.18
PRK09435332 membrane ATPase/protein kinase; Provisional 99.17
KOG0394|consensus210 99.16
COG1163365 DRG Predicted GTPase [General function prediction 99.16
cd01850276 CDC_Septin CDC/Septin. Septins are a conserved fam 99.15
KOG0052|consensus391 99.15
cd04102202 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove 99.14
KOG0080|consensus209 99.14
KOG0095|consensus213 99.12
PF03308266 ArgK: ArgK protein; InterPro: IPR005129 Bacterial 99.09
KOG0093|consensus193 99.09
cd0369391 EF1_alpha_II EF1_alpha_II: this family represents 99.08
cd01899318 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg 99.08
PF08477119 Miro: Miro-like protein; InterPro: IPR013684 Mitoc 99.06
cd01853249 Toc34_like Toc34-like (Translocon at the Outer-env 99.05
cd0369883 eRF3_II_like eRF3_II_like: domain similar to domai 99.05
COG1703323 ArgK Putative periplasmic protein kinase ArgK and 99.03
COG1100219 GTPase SAR1 and related small G proteins [General 99.03
KOG0070|consensus181 99.03
KOG0098|consensus216 99.03
PF09439181 SRPRB: Signal recognition particle receptor beta s 99.02
COG0536369 Obg Predicted GTPase [General function prediction 99.01
PTZ00099176 rab6; Provisional 99.0
KOG0076|consensus197 99.0
TIGR02836492 spore_IV_A stage IV sporulation protein A. A compa 99.0
KOG0079|consensus198 98.99
KOG0087|consensus222 98.98
TIGR00750300 lao LAO/AO transport system ATPase. Mutations have 98.97
PLN00023334 GTP-binding protein; Provisional 98.97
PF0314474 GTP_EFTU_D2: Elongation factor Tu domain 2; InterP 98.95
PRK13768253 GTPase; Provisional 98.93
KOG0090|consensus238 98.9
KOG0086|consensus214 98.89
cd0129187 PseudoU_synth PseudoU_synth: Pseudouridine synthas 98.88
PRK09602396 translation-associated GTPase; Reviewed 98.88
KOG0395|consensus196 98.85
cd0408982 eRF3_II eRF3_II: domain II of the eukaryotic class 98.84
COG4917148 EutP Ethanolamine utilization protein [Amino acid 98.84
cd0369787 EFTU_II EFTU_II: Elongation factor Tu domain II. E 98.83
cd0369581 CysN_NodQ_II CysN_NodQ_II: This subfamily represen 98.83
cd0369487 GTPBP_II Domain II of the GP-1 family of GTPase. T 98.82
KOG1532|consensus366 98.79
KOG0071|consensus180 98.77
KOG0083|consensus192 98.77
KOG0088|consensus218 98.77
TIGR00073207 hypB hydrogenase accessory protein HypB. HypB is i 98.75
cd0369683 selB_II selB_II: this subfamily represents the dom 98.74
smart00053240 DYNc Dynamin, GTPase. Large GTPases that mediate v 98.74
cd0134283 Translation_Factor_II_like Translation_Factor_II_l 98.71
KOG0072|consensus182 98.69
PF05049376 IIGP: Interferon-inducible GTPase (IIGP); InterPro 98.69
KOG0081|consensus219 98.69
PF00350168 Dynamin_N: Dynamin family; InterPro: IPR001401 Mem 98.66
PRK09601364 GTP-binding protein YchF; Reviewed 98.65
PF04670232 Gtr1_RagA: Gtr1/RagA G protein conserved region; I 98.65
TIGR00991313 3a0901s02IAP34 GTP-binding protein (Chloroplast En 98.64
KOG0074|consensus185 98.62
PF03029238 ATP_bind_1: Conserved hypothetical ATP binding pro 98.61
KOG0091|consensus213 98.59
KOG0077|consensus193 98.56
TIGR00101199 ureG urease accessory protein UreG. This model rep 98.56
KOG0410|consensus410 98.53
KOG0097|consensus215 98.51
COG5192 1077 BMS1 GTP-binding protein required for 40S ribosome 98.51
PRK10463290 hydrogenase nickel incorporation protein HypB; Pro 98.5
KOG2486|consensus320 98.49
KOG1490|consensus620 98.43
cd01859156 MJ1464 MJ1464. This family represents archaeal GTP 98.41
cd01900274 YchF YchF subfamily. YchF is a member of the Obg f 98.4
COG0378202 HypB Ni2+-binding GTPase involved in regulation of 98.38
PTZ00258390 GTP-binding protein; Provisional 98.33
PF04548212 AIG1: AIG1 family; InterPro: IPR006703 This entry 98.33
PF00735281 Septin: Septin; InterPro: IPR000038 Septins consti 98.32
TIGR00993763 3a0901s04IAP86 chloroplast protein import componen 98.28
KOG4252|consensus246 98.23
KOG1486|consensus364 98.18
cd0369284 mtIF2_IVc mtIF2_IVc: this family represents the C2 98.15
COG0012372 Predicted GTPase, probable translation factor [Tra 98.13
COG5019373 CDC3 Septin family protein [Cell division and chro 98.1
cd01858157 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei 98.08
cd03688113 eIF2_gamma_II eIF2_gamma_II: this subfamily repres 98.08
cd01856171 YlqF YlqF. Proteins of the YlqF family contain all 98.08
cd01855190 YqeH YqeH. YqeH is an essential GTP-binding protei 98.07
TIGR01213388 conserved hypothetical protein TIGR01213. Members 98.05
KOG1547|consensus336 98.04
KOG1707|consensus625 98.03
KOG0448|consensus749 98.03
TIGR03596276 GTPase_YlqF ribosome biogenesis GTP-binding protei 98.03
KOG2655|consensus366 98.02
KOG1954|consensus532 98.0
cd01857141 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t 98.0
KOG3883|consensus198 97.95
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 97.94
KOG0393|consensus198 97.91
KOG1673|consensus205 97.9
KOG3886|consensus295 97.89
PRK09563287 rbgA GTPase YlqF; Reviewed 97.89
cd01858157 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei 97.87
PRK10416318 signal recognition particle-docking protein FtsY; 97.87
cd01849155 YlqF_related_GTPase YlqF-related GTPases. These pr 97.8
KOG1487|consensus358 97.79
cd04178172 Nucleostemin_like Nucleostemin-like. Nucleostemin 97.78
cd01849155 YlqF_related_GTPase YlqF-related GTPases. These pr 97.77
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 97.74
cd03115173 SRP The signal recognition particle (SRP) mediates 97.74
cd01855190 YqeH YqeH. YqeH is an essential GTP-binding protei 97.72
TIGR03596276 GTPase_YlqF ribosome biogenesis GTP-binding protei 97.71
KOG0096|consensus216 97.68
cd03114148 ArgK-like The function of this protein family is u 97.66
PRK14974336 cell division protein FtsY; Provisional 97.64
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 97.63
PRK14554422 putative pseudouridylate synthase; Provisional 97.59
PRK09563287 rbgA GTPase YlqF; Reviewed 97.58
TIGR00064272 ftsY signal recognition particle-docking protein F 97.57
cd01857141 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t 97.57
PF03193161 DUF258: Protein of unknown function, DUF258; Inter 97.56
PRK12289352 GTPase RsgA; Reviewed 97.55
TIGR00157245 ribosome small subunit-dependent GTPase A. The Aqu 97.54
cd01856171 YlqF YlqF. Proteins of the YlqF family contain all 97.53
TIGR03597360 GTPase_YqeH ribosome biogenesis GTPase YqeH. This 97.51
cd0370295 IF2_mtIF2_II This family represents the domain II 97.46
PRK00098298 GTPase RsgA; Reviewed 97.46
PRK12288347 GTPase RsgA; Reviewed 97.41
TIGR00092368 GTP-binding protein YchF. This predicted GTP-bindi 97.39
PF0806859 DKCLD: DKCLD (NUC011) domain; InterPro: IPR012960 97.39
cd01854287 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil 97.38
cd03112158 CobW_like The function of this protein family is u 97.36
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 97.34
TIGR03597360 GTPase_YqeH ribosome biogenesis GTPase YqeH. This 97.34
PRK01889356 GTPase RsgA; Reviewed 97.31
PRK12289352 GTPase RsgA; Reviewed 97.29
TIGR00157245 ribosome small subunit-dependent GTPase A. The Aqu 97.27
COG1162301 Predicted GTPases [General function prediction onl 97.27
COG1161322 Predicted GTPases [General function prediction onl 97.26
cd01859156 MJ1464 MJ1464. This family represents archaeal GTP 97.24
PRK13796365 GTPase YqeH; Provisional 97.22
cd00066317 G-alpha G protein alpha subunit. The alpha subunit 97.21
PRK12288347 GTPase RsgA; Reviewed 97.19
cd02036179 MinD Bacterial cell division requires the formatio 97.19
cd01851224 GBP Guanylate-binding protein (GBP), N-terminal do 97.19
KOG2485|consensus335 97.19
PRK00771437 signal recognition particle protein Srp54; Provisi 97.16
cd03703110 aeIF5B_II aeIF5B_II: This family represents the do 97.15
smart00275342 G_alpha G protein alpha subunit. Subunit of G prot 97.15
PF1457881 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1 97.07
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 97.04
cd01854287 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil 97.01
cd0370195 IF2_IF5B_II IF2_IF5B_II: This family represents th 97.0
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 96.99
cd03110179 Fer4_NifH_child This protein family's function is 96.95
KOG1491|consensus391 96.92
PRK12726407 flagellar biosynthesis regulator FlhF; Provisional 96.9
KOG4423|consensus229 96.87
PF09547492 Spore_IV_A: Stage IV sporulation protein A (spore_ 96.81
KOG3905|consensus473 96.79
cd02553167 PseudoU_synth_RsuA PseudoU_synth_RsuA: Pseudouridi 96.78
PRK13796365 GTPase YqeH; Provisional 96.77
cd02038139 FleN-like FleN is a member of the Fer4_NifH superf 96.76
PRK10867433 signal recognition particle protein; Provisional 96.75
PRK00098298 GTPase RsgA; Reviewed 96.69
PRK11537318 putative GTP-binding protein YjiA; Provisional 96.67
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 96.67
PRK10475290 23S rRNA pseudouridine synthase F; Provisional 96.65
TIGR00959428 ffh signal recognition particle protein. This mode 96.57
PF05783472 DLIC: Dynein light intermediate chain (DLIC); Inte 96.53
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 96.51
TIGR01621217 RluA-like pseudouridine synthase Rlu family protei 96.51
PRK10158219 23S rRNA/tRNA pseudouridine synthase A; Provisiona 96.51
cd02558246 PSRA_1 PSRA_1: Pseudouridine synthase, a subgroup 96.45
cd02557213 PseudoU_synth_ScRIB2 PseudoU_synth_ScRIB2_like: Ps 96.44
PRK06995484 flhF flagellar biosynthesis regulator FlhF; Valida 96.42
COG0523323 Putative GTPases (G3E family) [General function pr 96.29
PRK14723767 flhF flagellar biosynthesis regulator FlhF; Provis 96.29
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 96.29
COG1162301 Predicted GTPases [General function prediction onl 96.24
PF02492178 cobW: CobW/HypB/UreG, nucleotide-binding domain; I 96.21
COG1419407 FlhF Flagellar GTP-binding protein [Cell motility 96.15
cd02563223 PseudoU_synth_TruC tRNA pseudouridine isomerase C: 96.12
KOG3887|consensus347 96.09
cd03111106 CpaE_like This protein family consists of proteins 96.04
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 96.02
PRK10700289 23S rRNA pseudouridylate synthase B; Provisional 95.91
cd02566168 PseudoU_synth_RluE PseudoU_synth_RluE: Pseudouridi 95.89
TIGR02475341 CobW cobalamin biosynthesis protein CobW. A broade 95.81
cd04178172 Nucleostemin_like Nucleostemin-like. Nucleostemin 95.8
cd02550154 PseudoU_synth_Rsu_Rlu_like PseudoU_synth_Rsu_Rlu: 95.59
COG0564289 RluA Pseudouridylate synthases, 23S RNA-specific [ 95.59
cd02042104 ParA ParA and ParB of Caulobacter crescentus belon 95.49
KOG0780|consensus483 95.34
cd0198399 Fer4_NifH The Fer4_NifH superfamily contains a var 95.33
TIGR00005299 rluA_subfam pseudouridine synthase, RluA family. m 95.32
PRK13695174 putative NTPase; Provisional 95.27
PRK11112257 tRNA pseudouridine synthase C; Provisional 95.25
KOG1424|consensus562 95.23
KOG0447|consensus980 95.17
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=5.6e-169  Score=1339.67  Aligned_cols=574  Identities=57%  Similarity=0.970  Sum_probs=567.8

Q ss_pred             cceeeeecccCCcceehhhhhhccCccccccccccccccchhhccccceEEeeeeeEEeecCeEEEEecCCCcccchHHH
Q psy1760         211 KNIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYNGTRINIIDTPGHADFGGEV  290 (793)
Q Consensus       211 ~nIaIiG~~~~GKSTLv~~Ll~~~~~~~~~~~v~~~~~D~~~~e~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ev  290 (793)
                      +||||++|++||||||+++||+++|.++..+.+.+++||++++|+||||||.++++.+.|++++|||+|||||+||++|+
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV   85 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV   85 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccCcEEEEEeCCCCCCchhHHHHHHHHHcCCccEEEEecccCCCCChhhhHhHHHHHHhhhcccccccCccEEEe
Q psy1760         291 ERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVVVNKIDRSNARPEWVVDATFDLFDKLCATEEQLDFPVIYT  370 (793)
Q Consensus       291 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~ip~IvvINKiD~~~a~~~~v~~~i~~~~~~l~~~~~~l~~Pvi~~  370 (793)
                      +|.++|+|++||+|||.+|++|||++++++|.+.|+++||||||+|++.+++++++++++++|.+++++++|++||++|+
T Consensus        86 ERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYA  165 (603)
T COG1217          86 ERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYA  165 (603)
T ss_pred             hhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCcccccccccCCchhhHHHHHhhcCcCcCCCCCCceEEEEEEeeeCCCceEEEEEEeecccccCCEEEEecCCCC
Q psy1760         371 SALHGYANENSKARQGNMIPLFEAILKYVPVHKDNSNNPLQLQIISLEYSSYLGKIGIGRILSGRIKSLQDVVIMNGPDD  450 (793)
Q Consensus       371 SA~~g~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~~~~~G~v~~grV~sG~lk~G~~v~~~~~~~g  450 (793)
                      ||+.|++..++.....++.+|+++|++|+|+|..+.++||+|+|+.++|++|+|++.+|||++|++|+||.|.+... +|
T Consensus       166 S~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~-~g  244 (603)
T COG1217         166 SARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKS-DG  244 (603)
T ss_pred             eccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcC-CC
Confidence            99999999888888889999999999999999999999999999999999999999999999999999999999987 78


Q ss_pred             CCCceeEeEEEEeecCceEEecccCCCcEEEEeccceeecCCeEeCCCCCCCCCCCccCCCceEEEEEecCCCCCCcCcc
Q psy1760         451 KPNKAKINQIRVFKGLDRVLVNEALSGDIVLITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGK  530 (793)
Q Consensus       451 ~~~~~kV~~i~~~~G~~~~~v~~a~aGdIv~i~gl~~i~iGdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~g~e~~  530 (793)
                      +....||++++.|.|++|.++++|.|||||+|+|++++.+|||||+++++.+||.+++++||++|.|.+|+|||+|+|||
T Consensus       245 ~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~igdTi~d~~~~~aLp~l~iDePTlsMtf~vN~SPfAG~EGk  324 (603)
T COG1217         245 TTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTICDPDNPEALPALSVDEPTLSMTFSVNDSPFAGKEGK  324 (603)
T ss_pred             cEEeeEEEeeeeccceeeeecccccccCEEEEcCcccccccccccCCCCccCCCCcccCCCceEEEEEecCCCCCCcCCc
Confidence            77789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHhhhhhhcCcceEEEEecCCCCeEEEEecchhhHHHHHHHHHhcCceEEEecCEEEEEEecCeeeCeEEEE
Q psy1760         531 FITTRQIKNRLDHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENL  610 (793)
Q Consensus       531 ~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~~v~g~GelhL~il~e~lrreg~e~~vs~P~V~yre~~g~llEP~~~~  610 (793)
                      ++|+|+|++||.||++.|++|+|+++++++. |.|+|||||||+||+|+|||||||++||+|+|+|||++|+++||||.+
T Consensus       325 ~vTSR~i~dRL~~El~~NValrVe~t~~pd~-f~VsGRGELhLsILiE~MRREGfEl~VsrP~Vi~keidG~~~EP~E~v  403 (603)
T COG1217         325 FVTSRQIRDRLNKELETNVALRVEETESPDA-FEVSGRGELHLSILIENMRREGFELQVSRPEVIIKEIDGVKCEPFEEV  403 (603)
T ss_pred             eeeHHHHHHHHHHHhhhceeEEEeecCCCCe-EEEeccceeehHHHHHHhhhcceEEEecCceEEEEecCCcCcCcceeE
Confidence            9999999999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCcchHHHHHHhhccCceeeeeeeccCCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEeccCCCcCCC
Q psy1760         611 FVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPFYNKSKYDL  690 (793)
Q Consensus       611 ~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~~~~~~~i  690 (793)
                      +|+||+||+|.||+.|+.|||+|.+|.+.++||++++|.+|+|+|+||+++|+|+|+|+|++++.|++|+|+.    |+|
T Consensus       404 ~iDv~ee~~G~Vie~lg~RKgem~~M~~~g~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~~----g~i  479 (603)
T COG1217         404 TIDVPEEHQGAVIEKLGERKGEMKDMAPDGKGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPVK----GEI  479 (603)
T ss_pred             EecCchhhhhHHHHHHhhhhHhHhhcccCCCCeEEEEEEccCcceeccchheeeccccceeeeeccccccccc----ccc
Confidence            9999999999999999999999999999888999999999999999999999999999999999999999999    999


Q ss_pred             CccccceeeeccchhHHHHHHhcccccccccccccceeccceEEEeeCCCCCeeecccccccccccccCCcccceeeccc
Q psy1760         691 GKRRNGVLISQYSGKAVAYSLWKLQDRGRLFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLINI  770 (793)
Q Consensus       691 ~~~~~g~~v~~~~g~~~~~~l~~~~~rg~~f~~~~~~vy~gmivg~~~~~~d~~~n~~~~k~~~~~r~~~~~~~~~~~~~  770 (793)
                      ..|.||+|||+++|++++|||++||+||.|||.||++||+|||||+|||+|||+|||||+||||||||||+|++++|+||
T Consensus       480 ~~R~nGvLiS~~~G~a~~yal~~lqdRG~~Fi~pG~~vYeGmiiG~hsR~nDL~VN~~k~K~LTN~Rasg~Dea~~L~~p  559 (603)
T COG1217         480 GGRHNGVLISNETGKAVAYALFNLQDRGKLFIEPGTKVYEGMIIGEHSRDNDLTVNVLKGKKLTNMRASGKDEAVTLTPP  559 (603)
T ss_pred             cccccceEEEcCCCcchHhhhhhHHhcCceeecCCCceeeeeEEeeecCccCceeccccccccccccccCCccceEecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhh--hccccceeEEEee
Q psy1760         771 IKIILIY--KYMNGDVAEWLKA  790 (793)
Q Consensus       771 ~~~~le~--~~~~~de~~e~~~  790 (793)
                      +.||||+  |||+||||||||.
T Consensus       560 ~~mtLE~Ale~i~dDElvEVTP  581 (603)
T COG1217         560 IRMTLERALEFIADDELVEVTP  581 (603)
T ss_pred             ccccHHHHHhhcCCCceEEecc
Confidence            9999999  9999999999995

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA Back     alignment and domain information
>PRK10218 GTP-binding protein; Provisional Back     alignment and domain information
>KOG0462|consensus Back     alignment and domain information
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01393 lepA GTP-binding protein LepA Back     alignment and domain information
>PRK05433 GTP-binding protein LepA; Provisional Back     alignment and domain information
>KOG0465|consensus Back     alignment and domain information
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK00007 elongation factor G; Reviewed Back     alignment and domain information
>TIGR00484 EF-G translation elongation factor EF-G Back     alignment and domain information
>PRK12739 elongation factor G; Reviewed Back     alignment and domain information
>PRK07560 elongation factor EF-2; Reviewed Back     alignment and domain information
>PRK13351 elongation factor G; Reviewed Back     alignment and domain information
>PRK12740 elongation factor G; Reviewed Back     alignment and domain information
>TIGR00490 aEF-2 translation elongation factor aEF-2 Back     alignment and domain information
>PLN00116 translation elongation factor EF-2 subunit; Provisional Back     alignment and domain information
>PTZ00416 elongation factor 2; Provisional Back     alignment and domain information
>PRK00020 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK04642 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK01851 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>TIGR00431 TruB tRNA pseudouridine 55 synthase Back     alignment and domain information
>PRK00130 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK00989 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK02755 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK05033 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK02484 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK01550 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK14124 tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>cd00506 PseudoU_synth_TruB_like PseudoU_synth_TruB: Pseudouridine synthase, TruB family Back     alignment and domain information
>PRK05389 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK03287 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK01528 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK14123 tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK04099 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK14846 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK14122 tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>cd02573 PseudoU_synth_EcTruB PseudoU_synth_EcTruB: Pseudouridine synthase, Escherichia coli TruB like Back     alignment and domain information
>PRK02193 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>KOG0464|consensus Back     alignment and domain information
>cd02867 PseudoU_synth_TruB_4 PseudoU_synth_TruB_4: Pseudouridine synthase homolog 4 Back     alignment and domain information
>PRK00741 prfC peptide chain release factor 3; Provisional Back     alignment and domain information
>TIGR00503 prfC peptide chain release factor 3 Back     alignment and domain information
>KOG0469|consensus Back     alignment and domain information
>cd02868 PseudoU_synth_hTruB2_like PseudoU_synth_ hTRUB2_Like: Pseudouridine synthase, humanTRUB2_like Back     alignment and domain information
>COG0130 TruB Pseudouridine synthase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01509 TruB_N: TruB family pseudouridylate synthase (N terminal domain); InterPro: IPR002501 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones Back     alignment and domain information
>cd02572 PseudoU_synth_hDyskerin PseudoU_synth_hDyskerin_Like: Pseudouridine synthase, human dyskerin like Back     alignment and domain information
>TIGR00425 CBF5 rRNA pseudouridine synthase, putative Back     alignment and domain information
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04270 H/ACA RNA-protein complex component Cbf5p; Reviewed Back     alignment and domain information
>KOG0468|consensus Back     alignment and domain information
>KOG0467|consensus Back     alignment and domain information
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN00043 elongation factor 1-alpha; Provisional Back     alignment and domain information
>CHL00071 tufA elongation factor Tu Back     alignment and domain information
>PTZ00141 elongation factor 1- alpha; Provisional Back     alignment and domain information
>PRK12736 elongation factor Tu; Reviewed Back     alignment and domain information
>PRK12735 elongation factor Tu; Reviewed Back     alignment and domain information
>PRK00049 elongation factor Tu; Reviewed Back     alignment and domain information
>TIGR00485 EF-Tu translation elongation factor TU Back     alignment and domain information
>PLN03126 Elongation factor Tu; Provisional Back     alignment and domain information
>PRK12317 elongation factor 1-alpha; Reviewed Back     alignment and domain information
>TIGR02034 CysN sulfate adenylyltransferase, large subunit Back     alignment and domain information
>PLN03127 Elongation factor Tu; Provisional Back     alignment and domain information
>KOG0460|consensus Back     alignment and domain information
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional Back     alignment and domain information
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha Back     alignment and domain information
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional Back     alignment and domain information
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional Back     alignment and domain information
>PRK05306 infB translation initiation factor IF-2; Validated Back     alignment and domain information
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional Back     alignment and domain information
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00487 IF-2 translation initiation factor IF-2 Back     alignment and domain information
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated Back     alignment and domain information
>KOG0458|consensus Back     alignment and domain information
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma Back     alignment and domain information
>TIGR00475 selB selenocysteine-specific elongation factor SelB Back     alignment and domain information
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00189 infB translation initiation factor 2; Provisional Back     alignment and domain information
>KOG1145|consensus Back     alignment and domain information
>COG5258 GTPBP1 GTPase [General function prediction only] Back     alignment and domain information
>cd01885 EF2 EF2 (for archaea and eukarya) Back     alignment and domain information
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site Back     alignment and domain information
>KOG0459|consensus Back     alignment and domain information
>cd01884 EF_Tu EF-Tu subfamily Back     alignment and domain information
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd01886 EF-G Elongation factor G (EF-G) subfamily Back     alignment and domain information
>cd04168 TetM_like Tet(M)-like subfamily Back     alignment and domain information
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04004 translation initiation factor IF-2; Validated Back     alignment and domain information
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily Back     alignment and domain information
>KOG0461|consensus Back     alignment and domain information
>cd04169 RF3 RF3 subfamily Back     alignment and domain information
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 Back     alignment and domain information
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily Back     alignment and domain information
>cd04166 CysN_ATPS CysN_ATPS subfamily Back     alignment and domain information
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily Back     alignment and domain information
>cd01890 LepA LepA subfamily Back     alignment and domain information
>cd04167 Snu114p Snu114p subfamily Back     alignment and domain information
>KOG2559|consensus Back     alignment and domain information
>PRK14845 translation initiation factor IF-2; Provisional Back     alignment and domain information
>cd01889 SelB_euk SelB subfamily Back     alignment and domain information
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) Back     alignment and domain information
>COG0486 ThdF Predicted GTPase [General function prediction only] Back     alignment and domain information
>cd04165 GTPBP1_like GTPBP1-like Back     alignment and domain information
>cd00881 GTP_translation_factor GTP translation factor family Back     alignment and domain information
>cd04171 SelB SelB subfamily Back     alignment and domain information
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane Back     alignment and domain information
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed Back     alignment and domain information
>KOG2529|consensus Back     alignment and domain information
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] Back     alignment and domain information
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2 Back     alignment and domain information
>KOG0463|consensus Back     alignment and domain information
>smart00838 EFG_C Elongation factor G C-terminus Back     alignment and domain information
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes Back     alignment and domain information
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O) Back     alignment and domain information
>COG1160 Predicted GTPases [General function prediction only] Back     alignment and domain information
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE Back     alignment and domain information
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily Back     alignment and domain information
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p Back     alignment and domain information
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p Back     alignment and domain information
>KOG1143|consensus Back     alignment and domain information
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G Back     alignment and domain information
>KOG0466|consensus Back     alignment and domain information
>COG1159 Era GTPase [General function prediction only] Back     alignment and domain information
>COG1160 Predicted GTPases [General function prediction only] Back     alignment and domain information
>cd01514 Elongation_Factor_C Elongation factor G C-terminus Back     alignment and domain information
>cd01894 EngA1 EngA1 subfamily Back     alignment and domain information
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions Back     alignment and domain information
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA Back     alignment and domain information
>KOG1144|consensus Back     alignment and domain information
>TIGR00436 era GTP-binding protein Era Back     alignment and domain information
>cd04160 Arfrp1 Arfrp1 subfamily Back     alignment and domain information
>PRK00093 GTP-binding protein Der; Reviewed Back     alignment and domain information
>PRK15494 era GTPase Era; Provisional Back     alignment and domain information
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA Back     alignment and domain information
>cd01895 EngA2 EngA2 subfamily Back     alignment and domain information
>PRK03003 GTP-binding protein Der; Reviewed Back     alignment and domain information
>PRK03003 GTP-binding protein Der; Reviewed Back     alignment and domain information
>cd01898 Obg Obg subfamily Back     alignment and domain information
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily Back     alignment and domain information
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes Back     alignment and domain information
>PRK00089 era GTPase Era; Reviewed Back     alignment and domain information
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans Back     alignment and domain information
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O) Back     alignment and domain information
>TIGR03156 GTP_HflX GTP-binding protein HflX Back     alignment and domain information
>cd04157 Arl6 Arl6 subfamily Back     alignment and domain information
>cd04154 Arl2 Arl2 subfamily Back     alignment and domain information
>cd01864 Rab19 Rab19 subfamily Back     alignment and domain information
>PRK00093 GTP-binding protein Der; Reviewed Back     alignment and domain information
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed Back     alignment and domain information
>cd04124 RabL2 RabL2 subfamily Back     alignment and domain information
>PRK15467 ethanolamine utilization protein EutP; Provisional Back     alignment and domain information
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed Back     alignment and domain information
>cd04151 Arl1 Arl1 subfamily Back     alignment and domain information
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily Back     alignment and domain information
>cd01860 Rab5_related Rab5-related subfamily Back     alignment and domain information
>cd04163 Era Era subfamily Back     alignment and domain information
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases Back     alignment and domain information
>cd01878 HflX HflX subfamily Back     alignment and domain information
>PRK09554 feoB ferrous iron transport protein B; Reviewed Back     alignment and domain information
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily Back     alignment and domain information
>cd01861 Rab6 Rab6 subfamily Back     alignment and domain information
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes Back     alignment and domain information
>cd04113 Rab4 Rab4 subfamily Back     alignment and domain information
>KOG1191|consensus Back     alignment and domain information
>TIGR00231 small_GTP small GTP-binding protein domain Back     alignment and domain information
>smart00173 RAS Ras subfamily of RAS small GTPases Back     alignment and domain information
>cd00880 Era_like Era (E Back     alignment and domain information
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB Back     alignment and domain information
>cd00879 Sar1 Sar1 subfamily Back     alignment and domain information
>cd04106 Rab23_lke Rab23-like subfamily Back     alignment and domain information
>PRK11058 GTPase HflX; Provisional Back     alignment and domain information
>smart00175 RAB Rab subfamily of small GTPases Back     alignment and domain information
>cd00154 Rab Rab family Back     alignment and domain information
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily Back     alignment and domain information
>cd04114 Rab30 Rab30 subfamily Back     alignment and domain information
>cd04147 Ras_dva Ras-dva subfamily Back     alignment and domain information
>cd04158 ARD1 ARD1 subfamily Back     alignment and domain information
>PRK04213 GTP-binding protein; Provisional Back     alignment and domain information
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily Back     alignment and domain information
>cd01862 Rab7 Rab7 subfamily Back     alignment and domain information
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases Back     alignment and domain information
>PRK12298 obgE GTPase CgtA; Reviewed Back     alignment and domain information
>PRK12299 obgE GTPase CgtA; Reviewed Back     alignment and domain information
>cd01866 Rab2 Rab2 subfamily Back     alignment and domain information
>cd01863 Rab18 Rab18 subfamily Back     alignment and domain information
>COG2229 Predicted GTPase [General function prediction only] Back     alignment and domain information
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 Back     alignment and domain information
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily Back     alignment and domain information
>cd01865 Rab3 Rab3 subfamily Back     alignment and domain information
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes Back     alignment and domain information
>cd04149 Arf6 Arf6 subfamily Back     alignment and domain information
>cd04155 Arl3 Arl3 subfamily Back     alignment and domain information
>cd04140 ARHI_like ARHI subfamily Back     alignment and domain information
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3) Back     alignment and domain information
>cd04119 RJL RJL (RabJ-Like) subfamily Back     alignment and domain information
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu Back     alignment and domain information
>PTZ00369 Ras-like protein; Provisional Back     alignment and domain information
>PRK00454 engB GTP-binding protein YsxC; Reviewed Back     alignment and domain information
>cd04139 RalA_RalB RalA/RalB subfamily Back     alignment and domain information
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily Back     alignment and domain information
>PLN03118 Rab family protein; Provisional Back     alignment and domain information
>cd04175 Rap1 Rap1 subgroup Back     alignment and domain information
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily Back     alignment and domain information
>cd01868 Rab11_like Rab11-like Back     alignment and domain information
>TIGR02729 Obg_CgtA Obg family GTPase CgtA Back     alignment and domain information
>cd04159 Arl10_like Arl10-like subfamily Back     alignment and domain information
>PRK12296 obgE GTPase CgtA; Reviewed Back     alignment and domain information
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases Back     alignment and domain information
>cd04136 Rap_like Rap-like subfamily Back     alignment and domain information
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 Back     alignment and domain information
>cd04177 RSR1 RSR1 subgroup Back     alignment and domain information
>cd04156 ARLTS1 ARLTS1 subfamily Back     alignment and domain information
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily Back     alignment and domain information
>cd00876 Ras Ras family Back     alignment and domain information
>cd01893 Miro1 Miro1 subfamily Back     alignment and domain information
>TIGR02528 EutP ethanolamine utilization protein, EutP Back     alignment and domain information
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor Back     alignment and domain information
>cd04112 Rab26 Rab26 subfamily Back     alignment and domain information
>cd04122 Rab14 Rab14 subfamily Back     alignment and domain information
>cd04142 RRP22 RRP22 subfamily Back     alignment and domain information
>cd04116 Rab9 Rab9 subfamily Back     alignment and domain information
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes Back     alignment and domain information
>cd04144 Ras2 Ras2 subfamily Back     alignment and domain information
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily Back     alignment and domain information
>PRK12297 obgE GTPase CgtA; Reviewed Back     alignment and domain information
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily Back     alignment and domain information
>cd04120 Rab12 Rab12 subfamily Back     alignment and domain information
>cd04176 Rap2 Rap2 subgroup Back     alignment and domain information
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily Back     alignment and domain information
>cd04123 Rab21 Rab21 subfamily Back     alignment and domain information
>PLN00223 ADP-ribosylation factor; Provisional Back     alignment and domain information
>cd04135 Tc10 TC10 subfamily Back     alignment and domain information
>cd04127 Rab27A Rab27a subfamily Back     alignment and domain information
>KOG1423|consensus Back     alignment and domain information
>cd00157 Rho Rho (Ras homology) family Back     alignment and domain information
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane Back     alignment and domain information
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily Back     alignment and domain information
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily Back     alignment and domain information
>cd04118 Rab24 Rab24 subfamily Back     alignment and domain information
>PTZ00133 ADP-ribosylation factor; Provisional Back     alignment and domain information
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H Back     alignment and domain information
>cd04101 RabL4 RabL4 (Rab-like4) subfamily Back     alignment and domain information
>cd04110 Rab35 Rab35 subfamily Back     alignment and domain information
>TIGR00437 feoB ferrous iron transporter FeoB Back     alignment and domain information
>cd04109 Rab28 Rab28 subfamily Back     alignment and domain information
>cd04134 Rho3 Rho3 subfamily Back     alignment and domain information
>COG0218 Predicted GTPase [General function prediction only] Back     alignment and domain information
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily Back     alignment and domain information
>cd04125 RabA_like RabA-like subfamily Back     alignment and domain information
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases Back     alignment and domain information
>cd04126 Rab20 Rab20 subfamily Back     alignment and domain information
>PLN03071 GTP-binding nuclear protein Ran; Provisional Back     alignment and domain information
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily Back     alignment and domain information
>cd04121 Rab40 Rab40 subfamily Back     alignment and domain information
>PLN03110 Rab GTPase; Provisional Back     alignment and domain information
>cd01882 BMS1 Bms1 Back     alignment and domain information
>cd04143 Rhes_like Rhes_like subfamily Back     alignment and domain information
>cd04128 Spg1 Spg1p Back     alignment and domain information
>cd01871 Rac1_like Rac1-like subfamily Back     alignment and domain information
>cd01874 Cdc42 Cdc42 subfamily Back     alignment and domain information
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases Back     alignment and domain information
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways Back     alignment and domain information
>cd01876 YihA_EngB The YihA (EngB) subfamily Back     alignment and domain information
>cd04132 Rho4_like Rho4-like subfamily Back     alignment and domain information
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases Back     alignment and domain information
>cd04130 Wrch_1 Wrch-1 subfamily Back     alignment and domain information
>cd01875 RhoG RhoG subfamily Back     alignment and domain information
>cd01870 RhoA_like RhoA-like subfamily Back     alignment and domain information
>PLN03108 Rab family protein; Provisional Back     alignment and domain information
>cd04133 Rop_like Rop subfamily Back     alignment and domain information
>cd04117 Rab15 Rab15 subfamily Back     alignment and domain information
>cd01892 Miro2 Miro2 subfamily Back     alignment and domain information
>KOG0073|consensus Back     alignment and domain information
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse Back     alignment and domain information
>cd04111 Rab39 Rab39 subfamily Back     alignment and domain information
>COG1084 Predicted GTPase [General function prediction only] Back     alignment and domain information
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins Back     alignment and domain information
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily Back     alignment and domain information
>cd04131 Rnd Rnd subfamily Back     alignment and domain information
>cd04148 RGK RGK subfamily Back     alignment and domain information
>COG2262 HflX GTPases [General function prediction only] Back     alignment and domain information
>KOG0092|consensus Back     alignment and domain information
>cd04104 p47_IIGP_like p47 (47-kDa) family Back     alignment and domain information
>KOG1489|consensus Back     alignment and domain information
>KOG0094|consensus Back     alignment and domain information
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p Back     alignment and domain information
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p Back     alignment and domain information
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily Back     alignment and domain information
>cd04103 Centaurin_gamma Centaurin gamma Back     alignment and domain information
>KOG0075|consensus Back     alignment and domain information
>KOG0084|consensus Back     alignment and domain information
>PRK09866 hypothetical protein; Provisional Back     alignment and domain information
>cd04129 Rho2 Rho2 subfamily Back     alignment and domain information
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) Back     alignment and domain information
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) Back     alignment and domain information
>PTZ00132 GTP-binding nuclear protein Ran; Provisional Back     alignment and domain information
>COG3596 Predicted GTPase [General function prediction only] Back     alignment and domain information
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily Back     alignment and domain information
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases Back     alignment and domain information
>KOG0078|consensus Back     alignment and domain information
>cd01873 RhoBTB RhoBTB subfamily Back     alignment and domain information
>PRK09435 membrane ATPase/protein kinase; Provisional Back     alignment and domain information
>KOG0394|consensus Back     alignment and domain information
>COG1163 DRG Predicted GTPase [General function prediction only] Back     alignment and domain information
>cd01850 CDC_Septin CDC/Septin Back     alignment and domain information
>KOG0052|consensus Back     alignment and domain information
>cd04102 RabL3 RabL3 (Rab-like3) subfamily Back     alignment and domain information
>KOG0080|consensus Back     alignment and domain information
>KOG0095|consensus Back     alignment and domain information
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components Back     alignment and domain information
>KOG0093|consensus Back     alignment and domain information
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages Back     alignment and domain information
>cd01899 Ygr210 Ygr210 subfamily Back     alignment and domain information
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases Back     alignment and domain information
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) Back     alignment and domain information
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3) Back     alignment and domain information
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] Back     alignment and domain information
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only] Back     alignment and domain information
>KOG0070|consensus Back     alignment and domain information
>KOG0098|consensus Back     alignment and domain information
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>COG0536 Obg Predicted GTPase [General function prediction only] Back     alignment and domain information
>PTZ00099 rab6; Provisional Back     alignment and domain information
>KOG0076|consensus Back     alignment and domain information
>TIGR02836 spore_IV_A stage IV sporulation protein A Back     alignment and domain information
>KOG0079|consensus Back     alignment and domain information
>KOG0087|consensus Back     alignment and domain information
>TIGR00750 lao LAO/AO transport system ATPase Back     alignment and domain information
>PLN00023 GTP-binding protein; Provisional Back     alignment and domain information
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] Back     alignment and domain information
>PRK13768 GTPase; Provisional Back     alignment and domain information
>KOG0090|consensus Back     alignment and domain information
>KOG0086|consensus Back     alignment and domain information
>cd01291 PseudoU_synth PseudoU_synth: Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi) Back     alignment and domain information
>PRK09602 translation-associated GTPase; Reviewed Back     alignment and domain information
>KOG0395|consensus Back     alignment and domain information
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3) Back     alignment and domain information
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] Back     alignment and domain information
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II Back     alignment and domain information
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu Back     alignment and domain information
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase Back     alignment and domain information
>KOG1532|consensus Back     alignment and domain information
>KOG0071|consensus Back     alignment and domain information
>KOG0083|consensus Back     alignment and domain information
>KOG0088|consensus Back     alignment and domain information
>TIGR00073 hypB hydrogenase accessory protein HypB Back     alignment and domain information
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu Back     alignment and domain information
>smart00053 DYNc Dynamin, GTPase Back     alignment and domain information
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins Back     alignment and domain information
>KOG0072|consensus Back     alignment and domain information
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence Back     alignment and domain information
>KOG0081|consensus Back     alignment and domain information
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another Back     alignment and domain information
>PRK09601 GTP-binding protein YchF; Reviewed Back     alignment and domain information
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 Back     alignment and domain information
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) Back     alignment and domain information
>KOG0074|consensus Back     alignment and domain information
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity Back     alignment and domain information
>KOG0091|consensus Back     alignment and domain information
>KOG0077|consensus Back     alignment and domain information
>TIGR00101 ureG urease accessory protein UreG Back     alignment and domain information
>KOG0410|consensus Back     alignment and domain information
>KOG0097|consensus Back     alignment and domain information
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional Back     alignment and domain information
>KOG2486|consensus Back     alignment and domain information
>KOG1490|consensus Back     alignment and domain information
>cd01859 MJ1464 MJ1464 Back     alignment and domain information
>cd01900 YchF YchF subfamily Back     alignment and domain information
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] Back     alignment and domain information
>PTZ00258 GTP-binding protein; Provisional Back     alignment and domain information
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria Back     alignment and domain information
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] Back     alignment and domain information
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains Back     alignment and domain information
>KOG4252|consensus Back     alignment and domain information
>KOG1486|consensus Back     alignment and domain information
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu Back     alignment and domain information
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>cd01858 NGP_1 NGP-1 Back     alignment and domain information
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea Back     alignment and domain information
>cd01856 YlqF YlqF Back     alignment and domain information
>cd01855 YqeH YqeH Back     alignment and domain information
>TIGR01213 conserved hypothetical protein TIGR01213 Back     alignment and domain information
>KOG1547|consensus Back     alignment and domain information
>KOG1707|consensus Back     alignment and domain information
>KOG0448|consensus Back     alignment and domain information
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF Back     alignment and domain information
>KOG2655|consensus Back     alignment and domain information
>KOG1954|consensus Back     alignment and domain information
>cd01857 HSR1_MMR1 HSR1/MMR1 Back     alignment and domain information
>KOG3883|consensus Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG0393|consensus Back     alignment and domain information
>KOG1673|consensus Back     alignment and domain information
>KOG3886|consensus Back     alignment and domain information
>PRK09563 rbgA GTPase YlqF; Reviewed Back     alignment and domain information
>cd01858 NGP_1 NGP-1 Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>cd01849 YlqF_related_GTPase YlqF-related GTPases Back     alignment and domain information
>KOG1487|consensus Back     alignment and domain information
>cd04178 Nucleostemin_like Nucleostemin-like Back     alignment and domain information
>cd01849 YlqF_related_GTPase YlqF-related GTPases Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>cd01855 YqeH YqeH Back     alignment and domain information
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF Back     alignment and domain information
>KOG0096|consensus Back     alignment and domain information
>cd03114 ArgK-like The function of this protein family is unkown Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK14554 putative pseudouridylate synthase; Provisional Back     alignment and domain information
>PRK09563 rbgA GTPase YlqF; Reviewed Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>cd01857 HSR1_MMR1 HSR1/MMR1 Back     alignment and domain information
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis Back     alignment and domain information
>PRK12289 GTPase RsgA; Reviewed Back     alignment and domain information
>TIGR00157 ribosome small subunit-dependent GTPase A Back     alignment and domain information
>cd01856 YlqF YlqF Back     alignment and domain information
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH Back     alignment and domain information
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2 Back     alignment and domain information
>PRK00098 GTPase RsgA; Reviewed Back     alignment and domain information
>PRK12288 GTPase RsgA; Reviewed Back     alignment and domain information
>TIGR00092 GTP-binding protein YchF Back     alignment and domain information
>PF08068 DKCLD: DKCLD (NUC011) domain; InterPro: IPR012960 This is an N-terminal domain of dyskerin-like proteins, which is often associated with the TruB N-terminal(IPR002501 from INTERPRO) and PUA(IPR002478 from INTERPRO) domains [] Back     alignment and domain information
>cd01854 YjeQ_engC YjeQ/EngC Back     alignment and domain information
>cd03112 CobW_like The function of this protein family is unkown Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH Back     alignment and domain information
>PRK01889 GTPase RsgA; Reviewed Back     alignment and domain information
>PRK12289 GTPase RsgA; Reviewed Back     alignment and domain information
>TIGR00157 ribosome small subunit-dependent GTPase A Back     alignment and domain information
>COG1162 Predicted GTPases [General function prediction only] Back     alignment and domain information
>COG1161 Predicted GTPases [General function prediction only] Back     alignment and domain information
>cd01859 MJ1464 MJ1464 Back     alignment and domain information
>PRK13796 GTPase YqeH; Provisional Back     alignment and domain information
>cd00066 G-alpha G protein alpha subunit Back     alignment and domain information
>PRK12288 GTPase RsgA; Reviewed Back     alignment and domain information
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell Back     alignment and domain information
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain Back     alignment and domain information
>KOG2485|consensus Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B Back     alignment and domain information
>smart00275 G_alpha G protein alpha subunit Back     alignment and domain information
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>cd01854 YjeQ_engC YjeQ/EngC Back     alignment and domain information
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd03110 Fer4_NifH_child This protein family's function is unkown Back     alignment and domain information
>KOG1491|consensus Back     alignment and domain information
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG4423|consensus Back     alignment and domain information
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A Back     alignment and domain information
>KOG3905|consensus Back     alignment and domain information
>cd02553 PseudoU_synth_RsuA PseudoU_synth_RsuA: Pseudouridine synthase, Escherichia coli RsuA like Back     alignment and domain information
>PRK13796 GTPase YqeH; Provisional Back     alignment and domain information
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>PRK00098 GTPase RsgA; Reviewed Back     alignment and domain information
>PRK11537 putative GTP-binding protein YjiA; Provisional Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK10475 23S rRNA pseudouridine synthase F; Provisional Back     alignment and domain information
>TIGR00959 ffh signal recognition particle protein Back     alignment and domain information
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>TIGR01621 RluA-like pseudouridine synthase Rlu family protein, TIGR01621 Back     alignment and domain information
>PRK10158 23S rRNA/tRNA pseudouridine synthase A; Provisional Back     alignment and domain information
>cd02558 PSRA_1 PSRA_1: Pseudouridine synthase, a subgroup of the RluA family Back     alignment and domain information
>cd02557 PseudoU_synth_ScRIB2 PseudoU_synth_ScRIB2_like: Pseudouridine synthase, Saccharomyces cerevisiae RIB2_like Back     alignment and domain information
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>COG0523 Putative GTPases (G3E family) [General function prediction only] Back     alignment and domain information
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>COG1162 Predicted GTPases [General function prediction only] Back     alignment and domain information
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt Back     alignment and domain information
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Back     alignment and domain information
>cd02563 PseudoU_synth_TruC tRNA pseudouridine isomerase C: Pseudouridine synthases catalyze the isomerization of specific uridines in an tRNA molecule to pseudouridines (5-ribosyluracil, psi) Back     alignment and domain information
>KOG3887|consensus Back     alignment and domain information
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK10700 23S rRNA pseudouridylate synthase B; Provisional Back     alignment and domain information
>cd02566 PseudoU_synth_RluE PseudoU_synth_RluE: Pseudouridine synthase, Escherichia coli RluE Back     alignment and domain information
>TIGR02475 CobW cobalamin biosynthesis protein CobW Back     alignment and domain information
>cd04178 Nucleostemin_like Nucleostemin-like Back     alignment and domain information
>cd02550 PseudoU_synth_Rsu_Rlu_like PseudoU_synth_Rsu_Rlu: Pseudouridine synthase, Rsu/Rlu family Back     alignment and domain information
>COG0564 RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation Back     alignment and domain information
>KOG0780|consensus Back     alignment and domain information
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain Back     alignment and domain information
>TIGR00005 rluA_subfam pseudouridine synthase, RluA family Back     alignment and domain information
>PRK13695 putative NTPase; Provisional Back     alignment and domain information
>PRK11112 tRNA pseudouridine synthase C; Provisional Back     alignment and domain information
>KOG1424|consensus Back     alignment and domain information
>KOG0447|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query793
3e3x_A332 The C-Terminal Part Of Bipa Protein From Vibrio Par 3e-80
1r3f_A314 Crystal Structure Of Trna Pseudouridine Synthase Tr 1e-47
1k8w_A327 Crystal Structure Of The E. Coli Pseudouridine Synt 2e-47
1zl3_A327 Coupling Of Active Site Motions And Rna Binding Len 8e-47
2ywe_A600 Crystal Structure Of Lepa From Aquifex Aeolicus Len 4e-30
1sgv_A316 Structure Of Trna Psi55 Pseudouridine Synthase (Tru 2e-27
2ywg_A600 Crystal Structure Of Gtp-Bound Lepa From Aquifex Ae 2e-27
1ze1_A309 Conformational Change Of Pseudouridine 55 Synthase 8e-27
1ze2_A309 Conformational Change Of Pseudouridine 55 Synthase 8e-27
1r3e_A309 Crystal Structure Of Trna Pseudouridine Synthase Tr 9e-27
2ab4_A309 Dissecting The Roles Of A Strictly Conserved Tyrosi 2e-26
1n0v_C 842 Crystal Structure Of Elongation Factor 2 Length = 8 2e-25
1u2r_A 842 Crystal Structure Of Adp-Ribosylated Ribosomal Tran 2e-25
3cb4_D599 The Crystal Structure Of Lepa Length = 599 3e-25
3deg_C545 Complex Of Elongating Escherichia Coli 70s Ribosome 3e-25
3zz0_A 693 Crystal Structure Of Ribosomal Elongation Factor (E 4e-23
2xex_A 693 Crystal Structure Of Staphylococcus Aureus Elongati 7e-23
3j25_A638 Structural Basis For Tetm-Mediated Tetracycline Res 1e-22
3zzu_A 693 Crystal Structure Of Staphylococcus Aureus Elongati 2e-22
3zzt_A 693 Crystal Structure Of Staphylococcus Aureus Elongati 4e-22
1fnm_A691 Structure Of Thermus Thermophilus Ef-G H573a Length 2e-21
1fnm_A691 Structure Of Thermus Thermophilus Ef-G H573a Length 8e-06
1ktv_A691 Crystal Structure Of Elongation Factor G Dimer With 2e-21
1ktv_A691 Crystal Structure Of Elongation Factor G Dimer With 8e-06
1efg_A691 The Crystal Structure Of Elongation Factor G Comple 3e-21
1efg_A691 The Crystal Structure Of Elongation Factor G Comple 8e-06
3izp_E688 Conformation Of Ef-G During Translocation Length = 3e-21
3izp_E688 Conformation Of Ef-G During Translocation Length = 8e-06
2bm1_A691 Ribosomal Elongation Factor G (Ef-G) Fusidic Acid R 3e-21
2bm1_A691 Ribosomal Elongation Factor G (Ef-G) Fusidic Acid R 8e-06
2bm0_A691 Ribosomal Elongation Factor G (Ef-G) Fusidic Acid R 6e-21
2bm0_A691 Ribosomal Elongation Factor G (Ef-G) Fusidic Acid R 8e-06
2bv3_A691 Crystal Structure Of A Mutant Elongation Factor G T 8e-21
2bv3_A691 Crystal Structure Of A Mutant Elongation Factor G T 2e-04
2j7k_A691 Crystal Structure Of The T84a Mutant Ef-G:gdpcp Com 9e-21
2j7k_A691 Crystal Structure Of The T84a Mutant Ef-G:gdpcp Com 8e-06
3j0e_H 702 Models For The T. Thermophilus Ribosome Recycling F 5e-20
3j0e_H702 Models For The T. Thermophilus Ribosome Recycling F 4e-10
2c78_A405 Ef-Tu Complexed With A Gtp Analog And The Antibioti 6e-20
2rdo_7 704 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = 6e-20
2rdo_7704 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = 5e-10
2c77_A405 Ef-Tu Complexed With A Gtp Analog And The Antibioti 6e-20
2y0u_Z405 The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bou 6e-20
1exm_A405 Crystal Structure Of Thermus Thermophilus Elongatio 8e-20
4fn5_A 709 Elongation Factor G 1 (Pseudomonas Aeruginosa) In C 9e-20
4fn5_A709 Elongation Factor G 1 (Pseudomonas Aeruginosa) In C 9e-10
2wrn_Z406 The Crystal Structure Of The 70s Ribosome Bound To 9e-20
1aip_A405 Ef-Tu Ef-Ts Complex From Thermus Thermophilus Lengt 1e-19
2y0y_Z405 The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bo 1e-19
1ttt_A405 Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Com 1e-19
4abr_Z405 Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kir 1e-19
1eft_A405 The Crystal Structure Of Elongation Factor Ef-Tu Fr 1e-19
3vqt_A548 Crystal Structure Analysis Of The Translation Facto 6e-17
3tr5_A528 Structure Of A Peptide Chain Release Factor 3 (Prfc 1e-16
2h5e_A529 Crystal Structure Of E.Coli Polypeptide Release Fac 4e-15
3uoq_W534 Crystal Structure Of Release Factor Rf3 Trapped In 5e-15
1d2e_A397 Crystal Structure Of Mitochondrial Ef-Tu In Complex 1e-14
3lwo_A340 Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONT 2e-14
2hvy_A346 Crystal Structure Of An HACA BOX RNP FROM PYROCOCCU 2e-14
2ey4_A333 Crystal Structure Of A Cbf5-Nop10-Gar1 Complex Leng 2e-14
3mqk_A328 Cbf5-Nop10-Gar1 Complex Binding With 17mer Rna Cont 2e-14
3hjw_A327 Structure Of A Functional Ribonucleoprotein Pseudou 2e-14
2apo_A357 Crystal Structure Of The Methanococcus Jannaschii C 6e-14
2aus_C334 Crystal Structure Of The Archaeal Box HACA SRNP NOP 8e-14
1d8t_A393 Crystal Structure Of Elongation Factor, Tu (Ef-Tu-M 9e-14
3u6b_A394 Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028 9e-14
1efu_A385 Elongation Factor Complex Ef-TuEF-Ts From Escherich 9e-14
1dg1_G394 Whole, Unmodified, Ef-Tu(Elongation Factor Tu). Len 9e-14
1ob2_A393 E. Coli Elongation Factor Ef-Tu Complexed With The 1e-13
1efc_A393 Intact Elongation Factor From E.Coli Length = 393 1e-13
1xb2_A409 Crystal Structure Of Bos Taurus Mitochondrial Elong 1e-13
2rfk_A334 Substrate Rna Positioning In The Archaeal HACA Ribo 1e-13
3agp_A 1289 Structure Of Viral Polymerase Form I Length = 1289 2e-13
3mmp_A678 Structure Of The Qb Replicase, An Rna-Dependent Rna 2e-13
1mj1_A405 Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIB 3e-13
1zn0_B655 Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map 3e-13
1zn0_B655 Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map 8e-06
3agj_A437 Crystal Structure Of Archaeal Pelota And Gtp-bound 1e-12
3vmf_A440 Archaeal Protein Length = 440 1e-12
3izy_P537 Mammalian Mitochondrial Translation Initiation Fact 5e-12
1jny_A435 Crystal Structure Of Sulfolobus Solfataricus Elonga 1e-11
1efm_A379 Structure Of The Gdp Domain Of Ef-Tu And Location O 3e-11
3u28_A400 Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From 4e-11
1wdt_A665 Crystal Structure Of Ttk003000868 From Thermus Ther 1e-10
1wdt_A665 Crystal Structure Of Ttk003000868 From Thermus Ther 6e-06
2lkc_A178 Free B.St If2-G2 Length = 178 2e-10
2d74_A419 Crystal Structure Of Translation Initiation Factor 2e-10
3j2k_7439 Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associ 4e-09
1g7s_A594 X-Ray Structure Of Translation Initiation Factor If 5e-09
1kjz_A410 Structure Of The Large Gamma Subunit Of Initiation 6e-09
1kk3_A410 Structure Of The Wild-Type Large Gamma Subunit Of I 6e-09
1f60_A458 Crystal Structure Of The Yeast Elongation Factor Co 6e-09
2pmd_A415 The Structures Of Aif2gamma Subunit From The Archae 9e-09
2aho_A414 Structure Of The Archaeal Initiation Factor Eif2 Al 9e-09
3pen_A403 Structure Of Archaeal Initiation Factor Aif2gamma S 1e-08
1g7r_A594 X-Ray Structure Of Translation Initiation Factor If 1e-08
3sjz_A409 The Structure Of Aif2gamma Subunit Delta 41-45 From 1e-08
4ac9_A482 Crystal Structure Of Translation Elongation Factor 1e-08
1kk0_A410 Structure Of The Large Gamma Subunit Of Initiation 3e-08
1r5b_A467 Crystal Structure Analysis Of Sup35 Length = 467 1e-07
1s0u_A408 Eif2gamma Apo Length = 408 1e-07
1zo1_I501 If2, If1, And Trna Fitted To Cryo-Em Data Of E. Col 1e-07
3p26_A483 Crystal Structure Of S. Cerevisiae Hbs1 Protein (Ap 3e-07
2hdn_B335 Trypsin-Modified Elongation Factor Tu In Complex Wi 3e-07
2hcj_B335 "trypsin-Modified Elongation Factor Tu In Complex W 3e-07
3izq_1611 Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To 4e-07
1zun_B434 Crystal Structure Of A Gtp-Regulated Atp Sulfurylas 2e-06
3p27_A483 Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gd 3e-06
3mca_A592 Structure Of The Dom34-Hbs1 Complex And Implication 4e-05
>pdb|3E3X|A Chain A, The C-Terminal Part Of Bipa Protein From Vibrio Parahaemolyticus Rimd 2210633 Length = 332 Back     alignment and structure 
Iteration: 1

 Score =  296 bits (758), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 148/282 (52%), Positives = 196/282 (69%), Gaps = 4/282 (1%)
Query: 483 TGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLD 542
           TG+ E+ I  TIC  +    LP L++DEPT+T  F VN SP AG EG F+T+R I  RL+
Sbjct: 4   TGLGELKISDTICAQNAVEALPALSVDEPTVTXTFQVNTSPFAGXEGXFVTSRNILERLE 63
Query: 543 HEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGE 602
            E+ +N+ LRV Q    D  + VSGRGELHL+ILIEN RREG+EL+VSRP VI    +G+
Sbjct: 64  KELVHNVALRVEQTDDPDK-FRVSGRGELHLSILIENXRREGFELAVSRPEVIIXEEDGQ 122
Query: 603 LYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNEF 662
           L EP+E + +D+ E +QG I + +  R G+L +   + K RVR ++  PSRGLIGFQ EF
Sbjct: 123 LXEPFETVTIDVXEEHQGGIXENIGLRXGELXDXAPDGKGRVRXDFIXPSRGLIGFQTEF 182
Query: 663 ITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLFI 722
            TLT G+GL+ H F+ Y P       ++G+R NGVLI+  +GKA+  +L+ LQ+RGRLFI
Sbjct: 183 XTLTSGSGLLYHTFDHYGPHXGG---NIGQRVNGVLIANAAGKALTNALFNLQERGRLFI 239
Query: 723 NHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEA 764
            H   VYEG +IGIHSRDNDL VN +K KQLTN+R+SG+D+A
Sbjct: 240 GHGVEVYEGXVIGIHSRDNDLTVNALKGKQLTNVRASGTDDA 281
>pdb|1R3F|A Chain A, Crystal Structure Of Trna Pseudouridine Synthase Trub And Its Rna Complex: Rna-Protein Recognition Through A Combination Of Rigid Docking And Induced Fit Length = 314 Back     alignment and structure
>pdb|1K8W|A Chain A, Crystal Structure Of The E. Coli Pseudouridine Synthase Trub Bound To A T Stem-Loop Rna Length = 327 Back     alignment and structure
>pdb|1ZL3|A Chain A, Coupling Of Active Site Motions And Rna Binding Length = 327 Back     alignment and structure
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus Length = 600 Back     alignment and structure
>pdb|1SGV|A Chain A, Structure Of Trna Psi55 Pseudouridine Synthase (Trub) Length = 316 Back     alignment and structure
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus Length = 600 Back     alignment and structure
>pdb|1ZE1|A Chain A, Conformational Change Of Pseudouridine 55 Synthase Upon Its Association With Rna Substrate Length = 309 Back     alignment and structure
>pdb|1ZE2|A Chain A, Conformational Change Of Pseudouridine 55 Synthase Upon Its Association With Rna Substrate Length = 309 Back     alignment and structure
>pdb|1R3E|A Chain A, Crystal Structure Of Trna Pseudouridine Synthase Trub And Its Rna Complex: Rna-Protein Recognition Through A Combination Of Rigid Docking And Induced Fit Length = 309 Back     alignment and structure
>pdb|2AB4|A Chain A, Dissecting The Roles Of A Strictly Conserved Tyrosine In Substrate Recognition And Catalysis By Pseudouridine 55 Synthase Length = 309 Back     alignment and structure
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2 Length = 842 Back     alignment and structure
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase From Saccharomyces Cerevisiae Length = 842 Back     alignment and structure
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa Length = 599 Back     alignment and structure
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And Ef4(Lepa)- Gmppnp Length = 545 Back     alignment and structure
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G From Staphylococcus Aureus With A Fusidic Acid Hyper-Sensitivity Mutation M16i Length = 693 Back     alignment and structure
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G Length = 693 Back     alignment and structure
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance Length = 638 Back     alignment and structure
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G With Mutations M16i And F88l Length = 693 Back     alignment and structure
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation Factor G With A Fusidic-Acid-Resistant Mutation F88l Length = 693 Back     alignment and structure
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a Length = 691 Back     alignment and structure
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a Length = 691 Back     alignment and structure
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without Nucleotide Length = 691 Back     alignment and structure
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without Nucleotide Length = 691 Back     alignment and structure
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed With Gdp, At 2.7 Angstroms Resolution Length = 691 Back     alignment and structure
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed With Gdp, At 2.7 Angstroms Resolution Length = 691 Back     alignment and structure
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation Length = 688 Back     alignment and structure
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation Length = 688 Back     alignment and structure
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant Mutant G16v Length = 691 Back     alignment and structure
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant Mutant G16v Length = 691 Back     alignment and structure
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant Mutant T84a Length = 691 Back     alignment and structure
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid Resistant Mutant T84a Length = 691 Back     alignment and structure
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped With A Gtp Analogue Length = 691 Back     alignment and structure
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped With A Gtp Analogue Length = 691 Back     alignment and structure
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex Length = 691 Back     alignment and structure
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex Length = 691 Back     alignment and structure
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor And The E. Coli Elongation Factor G Bound To The E. Coli Post-Termination Complex Length = 702 Back     alignment and structure
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor And The E. Coli Elongation Factor G Bound To The E. Coli Post-Termination Complex Length = 702 Back     alignment and structure
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic Pulvomycin Length = 405 Back     alignment and structure
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = 704 Back     alignment and structure
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = 704 Back     alignment and structure
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic Ge2270 A Length = 405 Back     alignment and structure
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome Length = 405 Back     alignment and structure
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation Factor Tu (Ef-Tu) In Complex With The Gtp Analogue Gppnhp. Length = 405 Back     alignment and structure
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex With Argyrin B Length = 709 Back     alignment and structure
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex With Argyrin B Length = 709 Back     alignment and structure
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu And Trna (Part 1 Of 4). Length = 406 Back     alignment and structure
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus Length = 405 Back     alignment and structure
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To A Near-Cognate Codon On The 70s Ribosome Length = 405 Back     alignment and structure
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex Length = 405 Back     alignment and structure
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin With The 70s Ribosome Length = 405 Back     alignment and structure
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From Thermus Aquaticus In The Gtp Conformation Length = 405 Back     alignment and structure
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3 Length = 548 Back     alignment and structure
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From Coxiella Burnetii Length = 528 Back     alignment and structure
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3 Length = 529 Back     alignment and structure
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome (Without Viomycin) Length = 534 Back     alignment and structure
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With Gdp Length = 397 Back     alignment and structure
>pdb|3LWO|A Chain A, Structure Of HACA RNP BOUND TO A SUBSTRATE RNA CONTAINING 5BRU Length = 340 Back     alignment and structure
>pdb|2HVY|A Chain A, Crystal Structure Of An HACA BOX RNP FROM PYROCOCCUS FURIOSUS Length = 346 Back     alignment and structure
>pdb|2EY4|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex Length = 333 Back     alignment and structure
>pdb|3MQK|A Chain A, Cbf5-Nop10-Gar1 Complex Binding With 17mer Rna Containing Aca Trinucleotide Length = 328 Back     alignment and structure
>pdb|3HJW|A Chain A, Structure Of A Functional Ribonucleoprotein Pseudouridine Synthase Bound To A Substrate Rna Length = 327 Back     alignment and structure
>pdb|2APO|A Chain A, Crystal Structure Of The Methanococcus Jannaschii Cbf5 Nop10 Complex Length = 357 Back     alignment and structure
>pdb|2AUS|C Chain C, Crystal Structure Of The Archaeal Box HACA SRNP NOP10-Cbf5 Complex Length = 334 Back     alignment and structure
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp) Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic Length = 393 Back     alignment and structure
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028 Length = 394 Back     alignment and structure
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli Length = 385 Back     alignment and structure
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu). Length = 394 Back     alignment and structure
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna Length = 393 Back     alignment and structure
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli Length = 393 Back     alignment and structure
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation Factor TuTS COMPLEX Length = 409 Back     alignment and structure
>pdb|2RFK|A Chain A, Substrate Rna Positioning In The Archaeal HACA Ribonucleoprotein Complex Length = 334 Back     alignment and structure
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I Length = 1289 Back     alignment and structure
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna Polymerase Consisting Of Viral And Host Proteins Length = 678 Back     alignment and structure
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s Ribosome Length = 405 Back     alignment and structure
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The 50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf Length = 655 Back     alignment and structure
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The 50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf Length = 655 Back     alignment and structure
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1 Alpha Complex Length = 437 Back     alignment and structure
>pdb|3VMF|A Chain A, Archaeal Protein Length = 440 Back     alignment and structure
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2 Length = 537 Back     alignment and structure
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation Factor 1 Alpha In Complex With Gdp Length = 435 Back     alignment and structure
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The Amino Acids Homologous To Ras Oncogene Proteins Length = 379 Back     alignment and structure
>pdb|3U28|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From Saccharomyces Cerevisiae Length = 400 Back     alignment and structure
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus Thermophilus Hb8 Length = 665 Back     alignment and structure
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus Thermophilus Hb8 Length = 665 Back     alignment and structure
>pdb|2LKC|A Chain A, Free B.St If2-G2 Length = 178 Back     alignment and structure
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor Aif2betagamma Heterodimer Length = 419 Back     alignment and structure
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated Termination Complex Length = 439 Back     alignment and structure
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Complexed With Gdp Length = 594 Back     alignment and structure
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi-G235d Mutant Length = 410 Back     alignment and structure
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi Complexed With Gdp-Mg2+ Length = 410 Back     alignment and structure
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex Eef1a:eef1ba Length = 458 Back     alignment and structure
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon Sulfolobus Solfataricus In The Gdp-Bound Form. Length = 415 Back     alignment and structure
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha- Gamma Heterodimer From Sulfolobus Solfataricus Complexed With Gdpnp Length = 414 Back     alignment and structure
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit Delta 37-47 From Sulfolobus Solfataricus In The Gdp-Bound Form. Length = 403 Back     alignment and structure
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Length = 594 Back     alignment and structure
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From Archaeon Sulfolobus Solfataricus Complexed With Gdp And Gdpnp Length = 409 Back     alignment and structure
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb From Methanococcus Maripaludis In Complex With Gdp Length = 482 Back     alignment and structure
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi Length = 410 Back     alignment and structure
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35 Length = 467 Back     alignment and structure
>pdb|1S0U|A Chain A, Eif2gamma Apo Length = 408 Back     alignment and structure
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s Initiation Complex Length = 501 Back     alignment and structure
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Apo-Form), A Translational Gtpase Involved In Rna Quality Control Pathways And Interacting With Dom34PELOTA Length = 483 Back     alignment and structure
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With Tetracycline At 2.8 Angstrom Resolution Length = 335 Back     alignment and structure
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With Tetracycline" Length = 335 Back     alignment and structure
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A Translating Ribosome Length = 611 Back     alignment and structure
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase Heterodimer From Pseudomonas Syringae Length = 434 Back     alignment and structure
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound Form), A Translational Gtpase Involved In Rna Quality Control Pathways And Interacting With Dom34PELOTA Length = 483 Back     alignment and structure
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For Its Role In No-Go Decay Length = 592 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query793
3e3x_A332 BIPA; MCSG,PSI2, structural genomics, protein stru 1e-130
1k8w_A327 TRNA pseudouridine synthase B; protein-RNA complex 2e-99
1r3e_A309 TRNA pseudouridine synthase B; RNA modification, p 7e-97
1sgv_A316 TRNA pseudouridine synthase B; hinged motion, tRNA 1e-92
2apo_A357 Probable tRNA pseudouridine synthase B; protein-pr 3e-71
2aus_C334 Pseudouridine synthase; isomerase, structural prot 1e-69
3u28_A400 H/ACA ribonucleoprotein complex subunit 4; pseudou 3e-62
1n0u_A 842 EF-2, elongation factor 2; G-protein, CIS-proline, 9e-42
1n0u_A842 EF-2, elongation factor 2; G-protein, CIS-proline, 3e-10
2ywe_A600 GTP-binding protein LEPA; G domain, beta-barrel, f 2e-37
3cb4_D599 GTP-binding protein LEPA; GTPase, OB-fold, membran 3e-37
2dy1_A665 Elongation factor G; translocation, GTP complex, s 2e-30
2dy1_A665 Elongation factor G; translocation, GTP complex, s 2e-11
1wb1_A482 Translation elongation factor SELB; selenocysteine 2e-27
2h5e_A529 Peptide chain release factor RF-3; beta barrel, tr 6e-27
3tr5_A528 RF-3, peptide chain release factor 3; protein synt 8e-27
2xex_A 693 Elongation factor G; GTPase, translation, biosynth 4e-26
2xex_A693 Elongation factor G; GTPase, translation, biosynth 2e-05
1dar_A691 EF-G, elongation factor G; ribosomal translocase, 5e-26
2rdo_7 704 EF-G, elongation factor G; elongation factor G, EF 1e-25
2rdo_7704 EF-G, elongation factor G; elongation factor G, EF 4e-05
2elf_A370 Protein translation elongation factor 1A; tRNA, py 4e-24
1r5b_A467 Eukaryotic peptide chain release factor GTP-bindi 8e-24
1jny_A435 EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- 8e-24
3mca_A592 HBS1, elongation factor 1 alpha-like protein; prot 1e-21
3izq_1611 HBS1P, elongation factor 1 alpha-like protein; NO- 2e-21
1zun_B434 Sulfate adenylate transferase, subunit 1/adenylyls 4e-21
3p26_A483 Elongation factor 1 alpha-like protein; GTP/GDP bi 4e-21
1f60_A458 Elongation factor EEF1A; protein-protein complex, 1e-20
3sjy_A403 Translation initiation factor 2 subunit gamma; zin 2e-20
1s0u_A408 EIF-2-gamma, translation initiation factor 2 gamma 2e-18
1d2e_A397 Elongation factor TU (EF-TU); G-protein, beta-barr 4e-18
3avx_A 1289 Elongation factor TS, elongation factor TU, linke 2e-17
1kk1_A410 EIF2gamma; initiation of translation; HET: GNP; 1. 2e-17
2c78_A405 Elongation factor TU-A; hydrolase, GTPase, transla 2e-16
2lkc_A178 Translation initiation factor IF-2; NMR {Geobacill 3e-16
3izy_P537 Translation initiation factor IF-2, mitochondrial; 1e-12
1g7s_A594 Translation initiation factor IF2/EIF5B; translati 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
1zo1_I501 IF2, translation initiation factor 2; E. coli, rib 1e-11
2v9k_A530 Uncharacterized protein FLJ32312; pseudouridine sy 3e-09
3qq5_A423 Small GTP-binding protein; hydrogenase, H-cluster, 2e-08
1tq4_A413 IIGP1, interferon-inducible GTPase; interferon gam 4e-07
3iev_A308 GTP-binding protein ERA; ERA, GTPase, KH domain, a 1e-06
1ega_A301 Protein (GTP-binding protein ERA); GTPase, RNA-bin 4e-06
3gee_A476 MNME, tRNA modification GTPase MNME; G protein, cy 5e-06
1wf3_A301 GTP-binding protein; GTPase, riken structural geno 2e-05
2gj8_A172 MNME, tRNA modification GTPase TRME; G-domain dime 5e-05
2hjg_A436 GTP-binding protein ENGA; GTPase ENGA KH-domain, h 5e-05
1xzp_A482 Probable tRNA modification GTPase TRME; GTP-bindin 1e-04
2cxx_A190 Probable GTP-binding protein ENGB; structural geno 1e-04
1mky_A439 Probable GTP-binding protein ENGA; GTPase, DER, KH 2e-04
2qpt_A550 EH domain-containing protein-2; protein-nucleotide 2e-04
3geh_A462 MNME, tRNA modification GTPase MNME; G protein, U3 5e-04
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus} Length = 332 Back     alignment and structure
 Score =  389 bits (1000), Expect = e-130
 Identities = 154/294 (52%), Positives = 208/294 (70%), Gaps = 4/294 (1%)

Query: 482 ITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRL 541
            TG+ E+ I  TIC  +    LP L++DEPT+T+ F VN SP AG EG F+T+R I  RL
Sbjct: 3   ATGLGELKISDTICAQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERL 62

Query: 542 DHEIKNNIGLRVTQNKHDDSIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNG 601
           + E+ +N+ LRV Q    D  + VSGRGELHL+ILIENMRREG+EL+VSRP VI    +G
Sbjct: 63  EKELVHNVALRVEQTDDPDK-FRVSGRGELHLSILIENMRREGFELAVSRPEVIIXEEDG 121

Query: 602 ELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINEKERVRLEYRIPSRGLIGFQNE 661
           +L EP+E + +D+ E +QG IM+ +  R G+L ++  + K RVR+++ +PSRGLIGFQ E
Sbjct: 122 QLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPDGKGRVRMDFIMPSRGLIGFQTE 181

Query: 662 FITLTRGTGLISHVFEEYAPFYNKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGRLF 721
           F+TLT G+GL+ H F+ Y P       ++G+R NGVLI+  +GKA+  +L+ LQ+RGRLF
Sbjct: 182 FMTLTSGSGLLYHTFDHYGPH---XGGNIGQRVNGVLIANAAGKALTNALFNLQERGRLF 238

Query: 722 INHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLINIIKIIL 775
           I H   VYEGM+IGIHSRDNDL VN +K KQLTN+R+SG+D+A  L   I + L
Sbjct: 239 IGHGVEVYEGMVIGIHSRDNDLTVNALKGKQLTNVRASGTDDAQVLTPPIVMTL 292
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A Length = 327 Back     alignment and structure
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A Length = 309 Back     alignment and structure
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2 Length = 316 Back     alignment and structure
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2 Length = 357 Back     alignment and structure
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A Length = 334 Back     alignment and structure
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A Length = 400 Back     alignment and structure
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* Length = 842 Back     alignment and structure
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* Length = 842 Back     alignment and structure
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* Length = 600 Back     alignment and structure
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* Length = 599 Back     alignment and structure
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* Length = 665 Back     alignment and structure
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* Length = 665 Back     alignment and structure
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Length = 482 Back     alignment and structure
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* Length = 529 Back     alignment and structure
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} Length = 528 Back     alignment and structure
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} Length = 693 Back     alignment and structure
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} Length = 693 Back     alignment and structure
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... Length = 691 Back     alignment and structure
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H Length = 704 Back     alignment and structure
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H Length = 704 Back     alignment and structure
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} Length = 370 Back     alignment and structure
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A Length = 467 Back     alignment and structure
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* Length = 435 Back     alignment and structure
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 592 Back     alignment and structure
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} Length = 611 Back     alignment and structure
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 434 Back     alignment and structure
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* Length = 483 Back     alignment and structure
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A Length = 458 Back     alignment and structure
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* Length = 403 Back     alignment and structure
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 408 Back     alignment and structure
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* Length = 397 Back     alignment and structure
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Length = 1289 Back     alignment and structure
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* Length = 410 Back     alignment and structure
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... Length = 405 Back     alignment and structure
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Length = 178 Back     alignment and structure
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} Length = 537 Back     alignment and structure
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* Length = 594 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} Length = 501 Back     alignment and structure
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens} Length = 530 Back     alignment and structure
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 Back     alignment and structure
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 Back     alignment and structure
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308 Back     alignment and structure
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301 Back     alignment and structure
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476 Back     alignment and structure
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301 Back     alignment and structure
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172 Back     alignment and structure
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436 Back     alignment and structure
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482 Back     alignment and structure
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190 Back     alignment and structure
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439 Back     alignment and structure
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} Length = 550 Back     alignment and structure
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query793
3e3x_A332 BIPA; MCSG,PSI2, structural genomics, protein stru 100.0
2ywe_A600 GTP-binding protein LEPA; G domain, beta-barrel, f 100.0
4fn5_A709 EF-G 1, elongation factor G 1; translation, transl 100.0
3cb4_D599 GTP-binding protein LEPA; GTPase, OB-fold, membran 100.0
3j25_A638 Tetracycline resistance protein TETM; antibiotic r 100.0
2rdo_7704 EF-G, elongation factor G; elongation factor G, EF 100.0
2xex_A693 Elongation factor G; GTPase, translation, biosynth 100.0
1dar_A691 EF-G, elongation factor G; ribosomal translocase, 100.0
2dy1_A665 Elongation factor G; translocation, GTP complex, s 100.0
1n0u_A842 EF-2, elongation factor 2; G-protein, CIS-proline, 100.0
3vqt_A548 RF-3, peptide chain release factor 3; translation, 100.0
1sgv_A316 TRNA pseudouridine synthase B; hinged motion, tRNA 100.0
1r3e_A309 TRNA pseudouridine synthase B; RNA modification, p 100.0
1k8w_A327 TRNA pseudouridine synthase B; protein-RNA complex 100.0
2h5e_A529 Peptide chain release factor RF-3; beta barrel, tr 100.0
3tr5_A528 RF-3, peptide chain release factor 3; protein synt 100.0
2apo_A357 Probable tRNA pseudouridine synthase B; protein-pr 100.0
3u28_A400 H/ACA ribonucleoprotein complex subunit 4; pseudou 100.0
2aus_C334 Pseudouridine synthase; isomerase, structural prot 100.0
3j2k_7439 ERF3, eukaryotic polypeptide chain release factor 100.0
1d2e_A397 Elongation factor TU (EF-TU); G-protein, beta-barr 100.0
2c78_A405 Elongation factor TU-A; hydrolase, GTPase, transla 100.0
1jny_A435 EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- 100.0
3p26_A483 Elongation factor 1 alpha-like protein; GTP/GDP bi 100.0
1r5b_A467 Eukaryotic peptide chain release factor GTP-bindi 100.0
1f60_A458 Elongation factor EEF1A; protein-protein complex, 100.0
3mca_A592 HBS1, elongation factor 1 alpha-like protein; prot 100.0
1zun_B434 Sulfate adenylate transferase, subunit 1/adenylyls 100.0
3avx_A 1289 Elongation factor TS, elongation factor TU, linke 100.0
2elf_A370 Protein translation elongation factor 1A; tRNA, py 100.0
3izq_1611 HBS1P, elongation factor 1 alpha-like protein; NO- 100.0
1kk1_A410 EIF2gamma; initiation of translation; HET: GNP; 1. 100.0
1s0u_A408 EIF-2-gamma, translation initiation factor 2 gamma 100.0
1wb1_A482 Translation elongation factor SELB; selenocysteine 100.0
1g7s_A594 Translation initiation factor IF2/EIF5B; translati 100.0
3sjy_A403 Translation initiation factor 2 subunit gamma; zin 100.0
3izy_P537 Translation initiation factor IF-2, mitochondrial; 99.97
1zo1_I501 IF2, translation initiation factor 2; E. coli, rib 99.97
3gee_A476 MNME, tRNA modification GTPase MNME; G protein, cy 99.82
3qq5_A423 Small GTP-binding protein; hydrogenase, H-cluster, 99.78
3geh_A462 MNME, tRNA modification GTPase MNME; G protein, U3 99.78
3iev_A308 GTP-binding protein ERA; ERA, GTPase, KH domain, a 99.77
1wf3_A301 GTP-binding protein; GTPase, riken structural geno 99.77
2hjg_A436 GTP-binding protein ENGA; GTPase ENGA KH-domain, h 99.75
2dyk_A161 GTP-binding protein; GTPase, ribosome-binding prot 99.75
4dhe_A223 Probable GTP-binding protein ENGB; melioidosis, RA 99.75
2lkc_A178 Translation initiation factor IF-2; NMR {Geobacill 99.74
1xzp_A482 Probable tRNA modification GTPase TRME; GTP-bindin 99.74
1ega_A301 Protein (GTP-binding protein ERA); GTPase, RNA-bin 99.73
4dcu_A456 GTP-binding protein ENGA; GTPase, GDP, protein bin 99.71
3iby_A256 Ferrous iron transport protein B; G protein, G dom 99.7
3i8s_A274 Ferrous iron transport protein B; GTPase, GPCR, ir 99.7
1mky_A439 Probable GTP-binding protein ENGA; GTPase, DER, KH 99.69
1svi_A195 GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro 99.68
2hjg_A436 GTP-binding protein ENGA; GTPase ENGA KH-domain, h 99.68
2gj8_A172 MNME, tRNA modification GTPase TRME; G-domain dime 99.68
1zj6_A187 ADP-ribosylation factor-like protein 5; ARL, GTP-b 99.68
2fg5_A192 RAB-22B, RAS-related protein RAB-31; G-protein, GT 99.68
2efe_B181 Small GTP-binding protein-like; GEF, GTPase, VPS9, 99.68
1r2q_A170 RAS-related protein RAB-5A; GTPase, GNP, atomic re 99.68
3pqc_A195 Probable GTP-binding protein ENGB; rossmann fold, 99.68
3t1o_A198 Gliding protein MGLA; G domain containing protein, 99.67
4bas_A199 ADP-ribosylation factor, putative (small GTPase, p 99.67
1r8s_A164 ADP-ribosylation factor 1; protein transport/excha 99.67
1upt_A171 ARL1, ADP-ribosylation factor-like protein 1; hydr 99.67
2xtp_A260 GTPase IMAP family member 2; immune system, G prot 99.66
3a1s_A258 Iron(II) transport protein B; FEOB, iron transport 99.66
1z0j_A170 RAB-22, RAS-related protein RAB-22A; RAB GTPase, R 99.66
2wji_A165 Ferrous iron transport protein B homolog; membrane 99.66
1ek0_A170 Protein (GTP-binding protein YPT51); vesicular tra 99.66
3k53_A271 Ferrous iron transport protein B; GTPase fold, hel 99.66
2h17_A181 ADP-ribosylation factor-like protein 5A; GDP, GTPa 99.66
3clv_A208 RAB5 protein, putative; malaria, GTPase, structura 99.65
2g6b_A180 RAS-related protein RAB-26; G-protein, GTP analogu 99.65
1z0f_A179 RAB14, member RAS oncogene family; RAB GTPase, ves 99.65
1zd9_A188 ADP-ribosylation factor-like 10B; transport protei 99.65
2fu5_C183 RAS-related protein RAB-8A; MSS4:RAB8 protein comp 99.65
3tkl_A196 RAS-related protein RAB-1A; vesicle trafficking, p 99.65
3tw8_B181 RAS-related protein RAB-35; longin domain, RAB GTP 99.65
1c1y_A167 RAS-related protein RAP-1A; GTP-binding proteins, 99.65
1ksh_A186 ARF-like protein 2; small GTPase, small GTP-bindin 99.65
2hxs_A178 RAB-26, RAS-related protein RAB-28; GTPase, signal 99.65
1fzq_A181 ADP-ribosylation factor-like protein 3; protein-GD 99.65
1wms_A177 RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p 99.64
2y8e_A179 RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti 99.64
2h57_A190 ADP-ribosylation factor-like protein 6; GTP, GTPas 99.64
1kao_A167 RAP2A; GTP-binding protein, small G protein, GDP, 99.64
2il1_A192 RAB12; G-protein, GDP, GTPase, predicted, structur 99.64
1zbd_A203 Rabphilin-3A; G protein, effector, RABCDR, synapti 99.64
1m2o_B190 GTP-binding protein SAR1, GTP binding protein; zin 99.64
1f6b_A198 SAR1; gtpases, N-terminal helix, Mg-containing com 99.64
2erx_A172 GTP-binding protein DI-RAS2; GTP hydrolysis, trans 99.64
1mky_A439 Probable GTP-binding protein ENGA; GTPase, DER, KH 99.64
2bme_A186 RAB4A, RAS-related protein RAB4A; GTP-binding prot 99.64
2nzj_A175 GTP-binding protein REM 1; GDP/GTP binding, GTP hy 99.64
3cph_A213 RAS-related protein SEC4; RAB GTPase, prenylation, 99.63
1u8z_A168 RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH 99.63
2b6h_A192 ADP-ribosylation factor 5; membrane trafficking, G 99.63
4dsu_A189 GTPase KRAS, isoform 2B; small G-protein, signalin 99.63
2gf9_A189 RAS-related protein RAB-3D; G-protein, structural 99.63
3gj0_A221 GTP-binding nuclear protein RAN; G protein, GDP, a 99.63
1ky3_A182 GTP-binding protein YPT7P; vesicular traffic, GTP 99.63
2f7s_A217 C25KG, RAS-related protein RAB-27B; G-protein, str 99.63
3bc1_A195 RAS-related protein RAB-27A; RAB27, GTPase, RAB, s 99.63
2p5s_A199 RAS and EF-hand domain containing; G-protein, RAB, 99.63
1g16_A170 RAS-related protein SEC4; G protein RAB, signaling 99.63
3q72_A166 GTP-binding protein RAD; G-domain, CAV2 beta, sign 99.63
2wjg_A188 FEOB, ferrous iron transport protein B homolog; me 99.63
4dcu_A456 GTP-binding protein ENGA; GTPase, GDP, protein bin 99.63
1moz_A183 ARL1, ADP-ribosylation factor-like protein 1; GTP- 99.62
2oil_A193 CATX-8, RAS-related protein RAB-25; G-protein, GDP 99.62
1mh1_A186 RAC1; GTP-binding, GTPase, small G-protein, RHO fa 99.62
3kkq_A183 RAS-related protein M-RAS; GTP-binding, GTPase, si 99.62
2fh5_B214 SR-beta, signal recognition particle receptor beta 99.62
1x3s_A195 RAS-related protein RAB-18; GTPase, GNP, structura 99.62
2ce2_X166 GTPase HRAS; signaling protein, guanine nucleotide 99.62
2hup_A201 RAS-related protein RAB-43; G-protein, GDP, struct 99.62
1z2a_A168 RAS-related protein RAB-23; RAB GTPase, vesicular 99.62
2fn4_A181 P23, RAS-related protein R-RAS; GDP/GTP binding, G 99.62
1vg8_A207 RAS-related protein RAB-7; GTP-binding protein, pr 99.62
2a9k_A187 RAS-related protein RAL-A; bacterial ADP-ribosyltr 99.62
3dz8_A191 RAS-related protein RAB-3B; GDP, GTPase, structura 99.61
3b1v_A272 Ferrous iron uptake transporter protein B; G prote 99.61
2atx_A194 Small GTP binding protein TC10; GTPase, P-loop, al 99.61
1z06_A189 RAS-related protein RAB-33B; RAB GTPase, RAB33B GT 99.61
2qu8_A228 Putative nucleolar GTP-binding protein 1; GTPase, 99.6
2bov_A206 RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, 99.6
3lxw_A247 GTPase IMAP family member 1; immunity, structural 99.6
2x77_A189 ADP-ribosylation factor; GTP-binding protein, smal 99.6
1z08_A170 RAS-related protein RAB-21; RAB GTPase, vesicular 99.6
2a5j_A191 RAS-related protein RAB-2B; GTPase, signal transdu 99.6
2yc2_C208 IFT27, small RAB-related GTPase; transport protein 99.6
3t5g_A181 GTP-binding protein RHEB; immunoglobulin-like beta 99.6
2o52_A200 RAS-related protein RAB-4B; G-protein, GDP, struct 99.6
2bcg_Y206 Protein YP2, GTP-binding protein YPT1; RABGTPase, 99.59
2ew1_A201 RAS-related protein RAB-30; G-protein, GTP analogu 99.59
2gf0_A199 GTP-binding protein DI-RAS1; GDP/GTP binding, GTP 99.59
4gzl_A204 RAS-related C3 botulinum toxin substrate 1; rossma 99.59
3bwd_D182 RAC-like GTP-binding protein ARAC6; G domain, cyto 99.59
3reg_A194 RHO-like small GTPase; cytoskeleton, nucleotide-bi 99.59
3con_A190 GTPase NRAS; structural genomics consortium, SGC, 99.59
4djt_A218 GTP-binding nuclear protein GSP1; structural genom 99.58
3q85_A169 GTP-binding protein REM 2; G-domain, CAV2 beta, si 99.58
3o47_A329 ADP-ribosylation factor GTPase-activating protein 99.58
3llu_A196 RAS-related GTP-binding protein C; structural geno 99.58
3l0i_B199 RAS-related protein RAB-1A; GEF-GDF-RAB complex, G 99.58
3cpj_B223 GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl 99.57
2cxx_A190 Probable GTP-binding protein ENGB; structural geno 99.57
3t5d_A274 Septin-7; GTP-binding protein, cytoskeleton, signa 99.57
2fv8_A207 H6, RHO-related GTP-binding protein RHOB; GDP/GTP 99.57
3oes_A201 GTPase rhebl1; small GTPase, structural genomics, 99.56
2q3h_A201 RAS homolog gene family, member U; GTPase, structu 99.56
2j0v_A212 RAC-like GTP-binding protein ARAC7; nucleotide-bin 99.56
2gco_A201 H9, RHO-related GTP-binding protein RHOC; GTPase,s 99.55
2qtf_A364 Protein HFLX, GTP-binding protein; beta-alpha-barr 99.55
2j1l_A214 RHO-related GTP-binding protein RHOD; GTPase, memb 99.55
3q3j_B214 RHO-related GTP-binding protein RHO6; RAS-binding 99.55
3r7w_A307 Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT 99.55
3ihw_A184 Centg3; RAS, centaurin, GTPase, structural genomic 99.54
2atv_A196 RERG, RAS-like estrogen-regulated growth inhibitor 99.54
3cbq_A195 GTP-binding protein REM 2; FLJ38964A, structural g 99.54
2iwr_A178 Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi 99.53
1m7b_A184 RND3/RHOE small GTP-binding protein; small GTPase, 99.52
3th5_A204 RAS-related C3 botulinum toxin substrate 1; rossma 99.28
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.51
3c5c_A187 RAS-like protein 12; GDP, GTPase, structural genom 99.51
1lnz_A342 SPO0B-associated GTP-binding protein; GTPase, OBG, 99.51
2e87_A357 Hypothetical protein PH1320; GTP-binding, GTPase, 99.5
4dkx_A216 RAS-related protein RAB-6A; GTP binding fold, memb 99.49
1gwn_A205 RHO-related GTP-binding protein RHOE; GTPase, inac 99.49
2qag_A361 Septin-2, protein NEDD5; cell cycle, cell division 99.49
2wkq_A332 NPH1-1, RAS-related C3 botulinum toxin substrate 1 99.48
2aka_B299 Dynamin-1; fusion protein, GTPase domain, myosin, 99.47
3def_A262 T7I23.11 protein; chloroplast, TOC33, GTPase, hydr 99.45
1jwy_B315 Dynamin A GTPase domain; dynamin, GTPase, GDP, myo 99.45
2j69_A695 Bacterial dynamin-like protein; FZO, FZL, GTPase, 99.43
2p67_A341 LAO/AO transport system kinase; ARGK, structural G 99.42
1h65_A270 Chloroplast outer envelope protein OEP34; GTPase, 99.42
3p32_A355 Probable GTPase RV1496/MT1543; structural genomics 99.41
1pui_A210 ENGB, probable GTP-binding protein ENGB; structura 99.41
3dpu_A535 RAB family protein; roccor, G-domain, COR, GTP-bin 99.41
2g3y_A211 GTP-binding protein GEM; small GTPase, GDP, inacti 99.4
1nrj_B218 SR-beta, signal recognition particle receptor beta 99.39
2zej_A184 Dardarin, leucine-rich repeat kinase 2; parkinson' 99.39
3lxx_A239 GTPase IMAP family member 4; structural genomics c 99.37
2cjw_A192 GTP-binding protein GEM; nucleotide-binding, small 99.35
2f9l_A199 RAB11B, member RAS oncogene family; RAB11B GTPase, 99.33
1wxq_A397 GTP-binding protein; structural genomics, riken st 99.32
3r7w_B331 Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT 99.3
2x2e_A353 Dynamin-1; nitration, hydrolase, membrane fission, 99.27
2ged_A193 SR-beta, signal recognition particle receptor beta 99.26
2www_A349 Methylmalonic aciduria type A protein, mitochondri 99.26
1oix_A191 RAS-related protein RAB-11A; small G protein, intr 99.24
1udx_A416 The GTP-binding protein OBG; TGS domain, riken str 99.24
2wsm_A221 Hydrogenase expression/formation protein (HYPB); m 99.22
3c5h_A255 Glucocorticoid receptor DNA-binding factor 1; RAS, 99.18
3zvr_A 772 Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito 99.18
2qpt_A550 EH domain-containing protein-2; protein-nucleotide 99.17
3t34_A360 Dynamin-related protein 1A, linker, dynamin-relat 99.12
1yrb_A262 ATP(GTP)binding protein; GTPase, P-loop, rossman f 99.04
1jal_A363 YCHF protein; nucleotide-binding fold, structural 99.02
4a9a_A376 Ribosome-interacting GTPase 1; DRG-DFRP complex, r 99.02
3e1y_E204 Eukaryotic peptide chain release factor GTP-bindi 98.99
2qm8_A337 GTPase/ATPase; G protein, G3E, metallochaperone, c 98.93
2dby_A368 GTP-binding protein; GDP, structural genomics, NPP 98.9
2j37_W504 Signal recognition particle 54 kDa protein (SRP54) 98.88
2qag_C418 Septin-7; cell cycle, cell division, GTP-binding, 98.87
2qnr_A301 Septin-2, protein NEDD5; structural genomics conso 98.81
2hf9_A226 Probable hydrogenase nickel incorporation protein 98.68
1cip_A353 Protein (guanine nucleotide-binding protein alpha- 98.66
2qag_B427 Septin-6, protein NEDD5; cell cycle, cell division 98.52
1zcb_A362 G alpha I/13; GTP-binding, lipoprotein, membrane, 98.51
3ec1_A369 YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase 98.51
3h2y_A368 GTPase family protein; GTP-binding protein YQEH, p 98.4
2ohf_A396 Protein OLA1, GTP-binding protein 9; ATPase, GTPas 98.38
3sop_A270 Neuronal-specific septin-3; hydrolase; HET: GDP; 2 98.33
1tq4_A413 IIGP1, interferon-inducible GTPase; interferon gam 98.27
1u0l_A301 Probable GTPase ENGC; permutation, OB-fold, zinc-f 98.24
2v3c_C432 SRP54, signal recognition 54 kDa protein; nucleoti 98.23
3ohm_A327 Guanine nucleotide-binding protein G(Q) subunit A; 98.22
1azs_C402 GS-alpha; complex (lyase/hydrolase), hydrolase, si 98.2
4fid_A340 G protein alpha subunit; RAS-like domain, all-heli 98.2
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 98.15
1ni3_A392 YCHF GTPase, YCHF GTP-binding protein; structural 98.13
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 98.1
1puj_A282 YLQF, conserved hypothetical protein YLQF; structu 98.09
2xtz_A354 Guanine nucleotide-binding protein alpha-1 subuni; 98.02
2v9k_A530 Uncharacterized protein FLJ32312; pseudouridine sy 98.02
1j8m_F297 SRP54, signal recognition 54 kDa protein; signalin 97.92
2yv5_A302 YJEQ protein; hydrolase, GTPase, permutation, stru 97.86
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 97.79
3ec1_A369 YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase 97.73
1xe1_A116 Hypothetical protein PF0907; structural genomics, 97.66
1puj_A282 YLQF, conserved hypothetical protein YLQF; structu 97.64
2xxa_A433 Signal recognition particle protein; protein trans 97.63
3l82_B227 F-box only protein 4; TRFH domain, helix, GTPase d 97.61
3cnl_A262 YLQF, putative uncharacterized protein; circular p 97.6
3h2y_A368 GTPase family protein; GTP-binding protein YQEH, p 97.48
3e70_C328 DPA, signal recognition particle receptor; FTSY, S 97.44
3cnl_A262 YLQF, putative uncharacterized protein; circular p 97.29
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.15
2yhs_A503 FTSY, cell division protein FTSY; cell cycle, prot 97.09
4dzz_A206 Plasmid partitioning protein PARF; deviant walker 97.07
1t9h_A307 YLOQ, probable GTPase ENGC; N-terminal beta-barrel 97.0
3szr_A608 Interferon-induced GTP-binding protein MX1; interf 96.99
1zu4_A320 FTSY; GTPase, signal recognition particle, SRP, re 96.92
1vma_A306 Cell division protein FTSY; TM0570, structural gen 96.85
1v9k_A228 Ribosomal large subunit pseudouridine synthase C; 96.82
1rj9_A304 FTSY, signal recognition protein; SRP-GTPase domai 96.76
2ffh_A425 Protein (FFH); SRP54, signal recognition particle, 96.74
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 96.66
1d1n_A99 Initiation factor 2; beta-barrel, gene regulation; 96.62
3dh3_A290 Ribosomal large subunit pseudouridine synthase F; 96.49
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 96.24
2rcn_A358 Probable GTPase ENGC; YJEQ, circularly permuted, G 96.14
2crv_A120 IF-2MT, translation initiation factor IF-2; riboso 95.97
3b9q_A302 Chloroplast SRP receptor homolog, alpha subunit CP 95.94
3q5d_A447 Atlastin-1; G protein, GTPase, GDP/GTP binding, hy 95.78
1vio_A243 Ribosomal small subunit pseudouridine synthase A; 95.64
1ksk_A234 Ribosomal small subunit pseudouridine synthase A; 95.45
2og2_A359 Putative signal recognition particle receptor; nuc 95.44
2i82_A217 Ribosomal large subunit pseudouridine synthase A; 95.11
2oml_A189 Ribosomal large subunit pseudouridine synthase E; 94.87
2olw_A217 Ribosomal large subunit pseudouridine synthase E; 94.65
1v9f_A325 Ribosomal large subunit pseudouridine synthase D; 94.63
2ph1_A262 Nucleotide-binding protein; alpha-beta protein, st 94.34
1zo1_I501 IF2, translation initiation factor 2; E. coli, rib 94.31
3end_A307 Light-independent protochlorophyllide reductase ir 94.25
1t9h_A307 YLOQ, probable GTPase ENGC; N-terminal beta-barrel 93.91
2gml_A237 Ribosomal large subunit pseudouridine synthase F; 93.49
3cwq_A209 Para family chromosome partitioning protein; alpha 93.14
2yv5_A302 YJEQ protein; hydrolase, GTPase, permutation, stru 93.07
1wcv_1257 SOJ, segregation protein; ATPase, bacterial, chrom 92.81
2rcn_A358 Probable GTPase ENGC; YJEQ, circularly permuted, G 92.63
1g3q_A237 MIND ATPase, cell division inhibitor; alpha-beta-a 92.17
3bfv_A271 CAPA1, CAPB2, membrane protein CAPA1, protein tyro 92.03
3ney_A197 55 kDa erythrocyte membrane protein; structural ge 91.94
3izy_P537 Translation initiation factor IF-2, mitochondrial; 91.75
1hyq_A263 MIND, cell division inhibitor (MIND-1); MINC, FTSZ 91.74
2oze_A298 ORF delta'; para, walker type atpases, DNA segrega 91.34
3lh2_S76 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immun 91.22
1u0l_A301 Probable GTPase ENGC; permutation, OB-fold, zinc-f 91.18
3cio_A299 ETK, tyrosine-protein kinase ETK; WZC, escherichia 90.9
1bif_A469 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; 90.86
3kjh_A254 CO dehydrogenase/acetyl-COA synthase complex, acce 90.23
2wbm_A252 MTHSBDS, ribosome maturation protein SDO1 homolog; 89.79
3la6_A286 Tyrosine-protein kinase WZC; P-loop protein, nucle 89.72
3k9g_A267 PF-32 protein; ssgcid, SBRI, decode biostructures, 89.4
1kgd_A180 CASK, peripheral plasma membrane CASK; maguk, guan 88.73
1t95_A240 Hypothetical protein AF0491; shwachman-bodian-diam 88.7
3q9l_A260 Septum site-determining protein MIND; ATPase, bact 88.64
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 88.6
1ye8_A178 Protein THEP1, hypothetical UPF0334 kinase-like pr 88.47
1g7s_A594 Translation initiation factor IF2/EIF5B; translati 88.46
1lvg_A198 Guanylate kinase, GMP kinase; transferase; HET: AD 88.38
4ido_A457 Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE 87.93
1byi_A224 Dethiobiotin synthase; biotin synthesis, cyclo-lig 87.91
2xj4_A286 MIPZ; replication, cell division, ATPase, WACA; 1. 87.49
3c8u_A208 Fructokinase; YP_612366.1, putative fructose trans 87.38
3tr0_A205 Guanylate kinase, GMP kinase; purines, pyrimidines 87.17
3ea0_A245 ATPase, para family; alpha-beta-alpha sandwich, st 87.13
1znw_A207 Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans 86.71
3zvl_A416 Bifunctional polynucleotide phosphatase/kinase; hy 86.62
3a00_A186 Guanylate kinase, GMP kinase; domain movement, dim 86.58
1zp6_A191 Hypothetical protein ATU3015; alpha-beta protein., 86.57
1kag_A173 SKI, shikimate kinase I; transferase, structural g 86.04
1z6g_A218 Guanylate kinase; structural genomics, SGC, struct 85.68
3co5_A143 Putative two-component system transcriptional RES 85.53
4gp7_A171 Metallophosphoesterase; polynucleotide kinase phos 85.44
1s96_A219 Guanylate kinase, GMP kinase; E.coli, dimer, SAD, 84.65
3tau_A208 Guanylate kinase, GMP kinase; structural genomics, 84.64
3asz_A211 Uridine kinase; cytidine phosphorylation, transfer 84.55
3kb2_A173 SPBC2 prophage-derived uncharacterized protein YOR 84.51
1htw_A158 HI0065; nucleotide-binding fold, structural genomi 84.3
2j41_A207 Guanylate kinase; GMP, GMK, transferase, ATP-bindi 84.25
3tif_A235 Uncharacterized ABC transporter ATP-binding prote; 84.22
2p5t_B253 PEZT; postsegregational killing system, phosphoryl 84.0
2pcj_A224 ABC transporter, lipoprotein-releasing system ATP- 83.86
4eun_A200 Thermoresistant glucokinase; putative sugar kinase 83.52
3lw7_A179 Adenylate kinase related protein (ADKA-like); AMP, 83.33
3b85_A208 Phosphate starvation-inducible protein; PHOH2, ATP 83.27
2bdt_A189 BH3686; alpha-beta protein, structural genomics, P 83.11
2qor_A204 Guanylate kinase; phosphotransferase, purine metab 82.89
1knq_A175 Gluconate kinase; ALFA/beta structure, transferase 82.57
3lnc_A231 Guanylate kinase, GMP kinase; ALS collaborative cr 82.56
3bos_A242 Putative DNA replication factor; P-loop containing 82.51
1ex7_A186 Guanylate kinase; substrate-induced FIT, domain mo 82.46
4he6_A89 Peptidase family U32; ultra-tight crystal packing, 82.41
2cbz_A237 Multidrug resistance-associated protein 1; ABC pro 82.36
2onk_A240 Molybdate/tungstate ABC transporter, ATP-binding p 82.25
2pze_A229 Cystic fibrosis transmembrane conductance regulat; 82.23
1g6h_A257 High-affinity branched-chain amino acid transport 82.0
2bbw_A246 Adenylate kinase 4, AK4; nucleotide kinase, nucleo 81.9
1b0u_A262 Histidine permease; ABC transporter, transport pro 81.89
4g1u_C266 Hemin import ATP-binding protein HMUV; membrane tr 81.88
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 81.86
1mv5_A243 LMRA, multidrug resistance ABC transporter ATP-bin 81.79
3gfo_A275 Cobalt import ATP-binding protein CBIO 1; structur 81.77
3hr8_A356 Protein RECA; alpha and beta proteins (A/B, A+B), 81.68
1sgw_A214 Putative ABC transporter; structural genomics, P p 81.65
3t61_A202 Gluconokinase; PSI-biology, structural genomics, p 81.64
2v9p_A305 Replication protein E1; AAA+ molecular motor, DNA 81.58
1ly1_A181 Polynucleotide kinase; PNK, phosphatase, transfera 81.57
1np6_A174 Molybdopterin-guanine dinucleotide biosynthesis pr 81.55
2f1r_A171 Molybdopterin-guanine dinucleotide biosynthesis pr 81.53
2ff7_A247 Alpha-hemolysin translocation ATP-binding protein 81.48
1ji0_A240 ABC transporter; ATP binding protein, structural g 81.34
2jaq_A205 Deoxyguanosine kinase; transferase, deoxyribonucle 81.02
2d2e_A250 SUFC protein; ABC-ATPase, SUF protein, 310-helix, 81.02
2ghi_A260 Transport protein; multidrug resistance protein, M 80.97
3vaa_A199 Shikimate kinase, SK; structural genomics, center 80.97
2eyu_A261 Twitching motility protein PILT; pilus retraction 80.93
2vhj_A331 Ntpase P4, P4; non- hydrolysable ATP analogue, hyd 80.87
1cke_A227 CK, MSSA, protein (cytidine monophosphate kinase); 80.86
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 80.67
2olj_A263 Amino acid ABC transporter; ABC domain, ATPase, hy 80.64
2kjq_A149 DNAA-related protein; solution structure, NESG, st 80.63
3aez_A312 Pantothenate kinase; transferase, homodimer, COA b 80.56
1nks_A194 Adenylate kinase; thermophilic, transferase; HET: 80.47
2i3b_A189 HCR-ntpase, human cancer-related ntpase; AAA, ross 80.45
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 80.42
1vpl_A256 ABC transporter, ATP-binding protein; TM0544, stru 80.41
2yvu_A186 Probable adenylyl-sulfate kinase; transferase, str 80.4
2qi9_C249 Vitamin B12 import ATP-binding protein BTUD; inner 80.36
3trf_A185 Shikimate kinase, SK; amino acid biosynthesis, tra 80.34
2if2_A204 Dephospho-COA kinase; alpha-beta protein, structur 80.26
1qhx_A178 CPT, protein (chloramphenicol phosphotransferase); 80.25
2pt7_A330 CAG-ALFA; ATPase, protein-protein complex, type IV 80.11
2ixe_A271 Antigen peptide transporter 1; ABC ATPase, hydrola 80.04
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus} Back     alignment and structure
Probab=100.00  E-value=4.3e-96  Score=783.55  Aligned_cols=305  Identities=51%  Similarity=0.853  Sum_probs=260.6

Q ss_pred             EEeccceeecCCeEeCCCCCCCCCCCccCCCceEEEEEecCCCCCCcCccccchHHHHHHhhhhhhcCcceEEEEecCCC
Q psy1760         481 LITGIEEICIGSTICDPSKPNGLPMLNIDEPTLTINFMVNNSPLAGREGKFITTRQIKNRLDHEIKNNIGLRVTQNKHDD  560 (793)
Q Consensus       481 ~i~gl~~i~iGdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~g~e~~~~~~~~l~~~L~k~~~~d~sl~v~~~~~~~  560 (793)
                      +++|++++.+|||||+.+++.++|++++++|+++|+|.|+++||+|++++++|+++|.++|.|++++||+|+|+++++++
T Consensus         2 av~Gl~~~~iGDTl~~~~~p~~L~~~~~~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t~   81 (332)
T 3e3x_A            2 NATGLGELKISDTICAQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDPD   81 (332)
T ss_dssp             ---------------------------CCCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSSTT
T ss_pred             CccCCCCCccCCEEcCCCCcccCCCCCCCCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEecchhhHHHHHHHHHhcCceEEEecCEEEEEEecCeeeCeEEEEEEEeCCcchHHHHHHhhccCceeeeeeecc
Q psy1760         561 SIYEVSGRGELHLTILIENMRREGYELSVSRPRVIFKTLNGELYEPYENLFVDIEEINQGIIMQKLNYRGGDLKNIEINE  640 (793)
Q Consensus       561 ~~~~v~g~GelhL~il~e~lrreg~e~~vs~P~V~yre~~g~llEP~~~~~i~vp~e~~G~v~~~l~~rrG~~~~~~~~~  640 (793)
                      + |+|+|||||||+|++|+|||||+|+.+++|+|+|||++|++||||++++|+||++|+|+||++|++|||++.+|++.+
T Consensus        82 ~-~~v~G~GELHLeIl~ErLrrEg~ev~v~~P~V~YrEt~G~llEPi~~v~I~vPee~~G~Vm~~L~~RRG~i~~m~~~~  160 (332)
T 3e3x_A           82 K-FRVSGRGELHLSILIENMRREGFELAVSRPEVIIXEEDGQLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPDG  160 (332)
T ss_dssp             E-EEEEESSHHHHHHHHHHHHHHTBCEEECCCEECCEEETTEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEECS
T ss_pred             e-EEEEeeCHHHHHHHHHHHHhcCceEEEeCCEEEEEEECCEEECcEEEEEEEECHHHHHHHHHHHHhhcccccCceECC
Confidence            9 999999999999999999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             CCeEEEEEEechhhhcchHHHHcccccceEEEEeEecceEec-cCCCcCCCCccccceeeeccchhHHHHHHhccccccc
Q psy1760         641 KERVRLEYRIPSRGLIGFQNEFITLTRGTGLISHVFEEYAPF-YNKSKYDLGKRRNGVLISQYSGKAVAYSLWKLQDRGR  719 (793)
Q Consensus       641 ~~~~~i~~~iP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~-~~~~~~~i~~~~~g~~v~~~~g~~~~~~l~~~~~rg~  719 (793)
                      +++++|+|.+|+|+|+||+++|+|+|+|+|+|+++|+||+|+ +    |++..|.||+|||+++|++|+|||++||+||+
T Consensus       161 ~g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~p----g~i~~r~~g~lv~~~~g~~~~y~l~~~~~rg~  236 (332)
T 3e3x_A          161 KGRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXG----GNIGQRVNGVLIANAAGKALTNALFNLQERGR  236 (332)
T ss_dssp             SSEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCC----CSCSCCCCCEEEESSCEECCHHHHHHHTTSEE
T ss_pred             CCeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCC----CccccccCceEEEcCCCcEeHhhhhhHHhhce
Confidence            679999999999999999999999999999999999999999 8    99999999999999999999999999999999


Q ss_pred             ccccccceeccceEEEeeCCCCCeeecccccccccccccCCcccceeeccccccchhh--hccccceeEEEee
Q psy1760         720 LFINHNDLVYEGMIIGIHSRDNDLLVNPIKEKQLTNIRSSGSDEAIQLINIIKIILIY--KYMNGDVAEWLKA  790 (793)
Q Consensus       720 ~f~~~~~~vy~gmivg~~~~~~d~~~n~~~~k~~~~~r~~~~~~~~~~~~~~~~~le~--~~~~~de~~e~~~  790 (793)
                      |||.||++||+|||||||+|+|||+|||||+||||||||||+|++++|+||+.||||+  |||+||||||||.
T Consensus       237 ~fv~pg~~vy~gmivg~~~r~~dl~vn~~k~k~ltn~r~~~~d~~~~l~~~~~~~le~~~~~i~~de~vevtp  309 (332)
T 3e3x_A          237 LFIGHGVEVYEGMVIGIHSRDNDLTVNALKGKQLTNVRASGTDDAQVLTPPIVMTLEQALEFIDDDELVEVTP  309 (332)
T ss_dssp             ESCCTTCEECTTEEEEEESSSSCEEECSCC--------------CCCCCCCCCCCHHHHHHHCCTTEEEEECS
T ss_pred             EEecCCCeEECCeEEEecCCcCCcEEecccccccccccccCCccceEecCCcccCHHHHHhhhcCCeeEEEcC
Confidence            9999999999999999999999999999999999999999999999999999999999  9999999999995
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* Back     alignment and structure
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} Back     alignment and structure
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* Back     alignment and structure
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} Back     alignment and structure
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H Back     alignment and structure
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} Back     alignment and structure
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... Back     alignment and structure
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* Back     alignment and structure
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* Back     alignment and structure
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* Back     alignment and structure
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2 Back     alignment and structure
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A Back     alignment and structure
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A Back     alignment and structure
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* Back     alignment and structure
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} Back     alignment and structure
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2 Back     alignment and structure
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A Back     alignment and structure
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A Back     alignment and structure
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} Back     alignment and structure
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* Back     alignment and structure
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... Back     alignment and structure
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* Back     alignment and structure
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* Back     alignment and structure
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A Back     alignment and structure
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A Back     alignment and structure
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Back     alignment and structure
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Back     alignment and structure
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Back     alignment and structure
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} Back     alignment and structure
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* Back     alignment and structure
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Back     alignment and structure
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* Back     alignment and structure
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* Back     alignment and structure
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* Back     alignment and structure
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} Back     alignment and structure
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} Back     alignment and structure
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Back     alignment and structure
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Back     alignment and structure
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Back     alignment and structure
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Back     alignment and structure
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Back     alignment and structure
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Back     alignment and structure
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Back     alignment and structure
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} Back     alignment and structure
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Back     alignment and structure
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Back     alignment and structure
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Back     alignment and structure
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* Back     alignment and structure
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} Back     alignment and structure
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* Back     alignment and structure
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Back     alignment and structure
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* Back     alignment and structure
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Back     alignment and structure
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Back     alignment and structure
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Back     alignment and structure
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Back     alignment and structure
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Back     alignment and structure
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Back     alignment and structure
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} Back     alignment and structure
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Back     alignment and structure
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Back     alignment and structure
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Back     alignment and structure
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A Back     alignment and structure
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Back     alignment and structure
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Back     alignment and structure
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} Back     alignment and structure
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Back     alignment and structure
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Back     alignment and structure
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Back     alignment and structure
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Back     alignment and structure
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Back     alignment and structure
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Back     alignment and structure
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Back     alignment and structure
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Back     alignment and structure
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Back     alignment and structure
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Back     alignment and structure
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Back     alignment and structure
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Back     alignment and structure
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Back     alignment and structure
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Back     alignment and structure
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Back     alignment and structure
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Back     alignment and structure
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Back     alignment and structure
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Back     alignment and structure
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Back     alignment and structure
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Back     alignment and structure
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Back     alignment and structure
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Back     alignment and structure
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Back     alignment and structure
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Back     alignment and structure
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Back     alignment and structure
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Back     alignment and structure
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... Back     alignment and structure
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Back     alignment and structure
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Back     alignment and structure
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Back     alignment and structure
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Back     alignment and structure
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Back     alignment and structure
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Back     alignment and structure
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Back     alignment and structure
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* Back     alignment and structure
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Back     alignment and structure
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Back     alignment and structure
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Back     alignment and structure
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Back     alignment and structure
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Back     alignment and structure
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Back     alignment and structure
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Back     alignment and structure
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Back     alignment and structure
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Back     alignment and structure
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Back     alignment and structure
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* Back     alignment and structure
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Back     alignment and structure
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Back     alignment and structure
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Back     alignment and structure
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Back     alignment and structure
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Back     alignment and structure
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Back     alignment and structure
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Back     alignment and structure
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* Back     alignment and structure
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Back     alignment and structure
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Back     alignment and structure
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* Back     alignment and structure
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Back     alignment and structure
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* Back     alignment and structure
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Back     alignment and structure
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Back     alignment and structure
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Back     alignment and structure
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Back     alignment and structure
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Back     alignment and structure
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Back     alignment and structure
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Back     alignment and structure
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* Back     alignment and structure
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Back     alignment and structure
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Back     alignment and structure
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Back     alignment and structure
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Back     alignment and structure
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A Back     alignment and structure
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Back     alignment and structure
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Back     alignment and structure
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* Back     alignment and structure
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Back     alignment and structure
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Back     alignment and structure
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Back     alignment and structure
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Back     alignment and structure
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Back     alignment and structure
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 Back     alignment and structure
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Back     alignment and structure
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* Back     alignment and structure
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Back     alignment and structure
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Back     alignment and structure
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Back     alignment and structure
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* Back     alignment and structure
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Back     alignment and structure
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* Back     alignment and structure
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* Back     alignment and structure
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 Back     alignment and structure
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Back     alignment and structure
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* Back     alignment and structure
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 Back     alignment and structure
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Back     alignment and structure
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Back     alignment and structure
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Back     alignment and structure
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Back     alignment and structure
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Back     alignment and structure
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 Back     alignment and structure
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* Back     alignment and structure
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A Back     alignment and structure
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Back     alignment and structure
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Back     alignment and structure
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 Back     alignment and structure
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} Back     alignment and structure
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Back     alignment and structure
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A Back     alignment and structure
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} Back     alignment and structure
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* Back     alignment and structure
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Back     alignment and structure
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 Back     alignment and structure
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} Back     alignment and structure
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens} Back     alignment and structure
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Back     alignment and structure
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A Back     alignment and structure
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Back     alignment and structure
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Back     alignment and structure
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Back     alignment and structure
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* Back     alignment and structure
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Back     alignment and structure
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Back     alignment and structure
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Back     alignment and structure
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Back     alignment and structure
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Back     alignment and structure
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} Back     alignment and structure
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} Back     alignment and structure
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Back     alignment and structure
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 Back     alignment and structure
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B Back     alignment and structure
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Back     alignment and structure
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Back     alignment and structure
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Back     alignment and structure
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Back     alignment and structure
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens} Back     alignment and structure
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F Back     alignment and structure
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Back     alignment and structure
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Back     alignment and structure
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1 Back     alignment and structure
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Back     alignment and structure
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 Back     alignment and structure
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Back     alignment and structure
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Back     alignment and structure
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Back     alignment and structure
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Back     alignment and structure
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Back     alignment and structure
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* Back     alignment and structure
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Back     alignment and structure
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B Back     alignment and structure
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A Back     alignment and structure
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* Back     alignment and structure
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1 Back     alignment and structure
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli} Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V Back     alignment and structure
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} Back     alignment and structure
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* Back     alignment and structure
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5 Back     alignment and structure
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A* Back     alignment and structure
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli} Back     alignment and structure
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli} Back     alignment and structure
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli} Back     alignment and structure
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A Back     alignment and structure
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* Back     alignment and structure
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} Back     alignment and structure
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Back     alignment and structure
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli} Back     alignment and structure
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} Back     alignment and structure
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} Back     alignment and structure
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* Back     alignment and structure
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V Back     alignment and structure
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* Back     alignment and structure
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* Back     alignment and structure
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} Back     alignment and structure
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 Back     alignment and structure
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} Back     alignment and structure
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene} Back     alignment and structure
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 Back     alignment and structure
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} Back     alignment and structure
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A Back     alignment and structure
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* Back     alignment and structure
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} Back     alignment and structure
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A Back     alignment and structure
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C Back     alignment and structure
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Back     alignment and structure
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* Back     alignment and structure
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Back     alignment and structure
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* Back     alignment and structure
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A Back     alignment and structure
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A Back     alignment and structure
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Back     alignment and structure
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Back     alignment and structure
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} Back     alignment and structure
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Back     alignment and structure
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* Back     alignment and structure
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Back     alignment and structure
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Back     alignment and structure
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* Back     alignment and structure
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Back     alignment and structure
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Back     alignment and structure
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Back     alignment and structure
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* Back     alignment and structure
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A Back     alignment and structure
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Back     alignment and structure
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Back     alignment and structure
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Back     alignment and structure
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Back     alignment and structure
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Back     alignment and structure
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Back     alignment and structure
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Back     alignment and structure
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Back     alignment and structure
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Back     alignment and structure
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A Back     alignment and structure
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A Back     alignment and structure
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Back     alignment and structure
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Back     alignment and structure
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Back     alignment and structure
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Back     alignment and structure
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Back     alignment and structure
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Back     alignment and structure
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Back     alignment and structure
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Back     alignment and structure
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Back     alignment and structure
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Back     alignment and structure
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Back     alignment and structure
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* Back     alignment and structure
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Back     alignment and structure
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A Back     alignment and structure
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} Back     alignment and structure
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Back     alignment and structure
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* Back     alignment and structure
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Back     alignment and structure
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Back     alignment and structure
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} Back     alignment and structure
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* Back     alignment and structure
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Back     alignment and structure
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Back     alignment and structure
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} Back     alignment and structure
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Back     alignment and structure
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Back     alignment and structure
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Back     alignment and structure
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A Back     alignment and structure
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 793
d1d2ea3196 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), 1e-55
d1sgva2233 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB 3e-53
d2c78a3204 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N 9e-53
d1r3ea2228 d.265.1.2 (A:10-237) Pseudouridine synthase II Tru 1e-47
d1k8wa5242 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB 2e-45
d1f60a3239 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N 5e-42
d2bv3a2276 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-t 1e-41
d1jnya3224 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N 3e-41
d2ey4a2245 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB 7e-40
d1n0ua2341 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N- 2e-39
d2apoa2230 d.265.1.2 (A:17-246) Pseudouridine synthase II Tru 1e-37
d1zunb3222 c.37.1.8 (B:16-237) Sulfate adenylate transferase 1e-30
d1r5ba3245 c.37.1.8 (A:215-459) Eukaryotic peptide chain rele 1e-29
d2qn6a3205 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su 2e-28
d2dy1a2267 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-t 1e-22
d1g7sa4227 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N- 7e-22
d1kk1a3195 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su 1e-21
d1n0ua1138 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), 6e-17
d1wb1a4179 c.37.1.8 (A:1-179) Elongation factor SelB, N-termi 1e-16
d2dy1a1103 b.43.3.1 (A:275-377) Elongation factor G (EF-G), d 2e-15
d2bv3a589 d.58.11.1 (A:600-688) Elongation factor G (EF-G) { 3e-14
d1yrba1244 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09 6e-14
d2dy1a596 d.58.11.1 (A:570-665) Elongation factor G (EF-G) { 3e-13
d2bv3a1121 b.43.3.1 (A:283-403) Elongation factor G (EF-G), d 4e-12
d1n0ua5117 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) 7e-12
d1mkya2186 c.37.1.8 (A:173-358) Probable GTPase Der, N-termin 2e-11
d1tq4a_400 c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( 3e-09
d2cxxa1184 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc 2e-08
d1mkya1171 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal 6e-06
d1nrjb_209 c.37.1.8 (B:) Signal recognition particle receptor 4e-05
d1egaa1179 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { 6e-05
d1xzpa2160 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog 8e-05
d3raba_169 c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI 1e-04
d2fh5b1207 c.37.1.8 (B:63-269) Signal recognition particle re 2e-04
d2fu5c1173 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta 3e-04
d1x3sa1177 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta 5e-04
d2bmea1174 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta 0.002
d1wf3a1178 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { 0.002
d2ew1a1171 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta 0.002
d1zd9a1164 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human 0.003
d1g16a_166 c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye 0.004
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

 Score =  187 bits (476), Expect = 1e-55
 Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 5/192 (2%)

Query: 212 NIAIIAHVDHGKTTLIDHLLRQSGTFRKNQNINARIMDSNEIEKERGITIFSKNCSIEYN 271
           N+  I HVDHGKTTL   + +        +      +D+   E+ RGITI + +      
Sbjct: 5   NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA 64

Query: 272 GTRINIIDTPGHADFGGEVERILSMVDNVLLLIDAVEGPMPQTRFVTRKALKLGFKPIVV 331
                  D PGHAD+   +    + +D  +L++ A +GPMPQTR     A ++G + +VV
Sbjct: 65  ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVV 124

Query: 332 V-NKID--RSNARPEWVVDATFDLFDKLCATEEQLDFPVIYTSALHGYANENSKARQGNM 388
             NK D  + +   E V     +L  +     E  + P+I  SAL      + +    ++
Sbjct: 125 YVNKADAVQDSEMVELVELEIRELLTEFGYKGE--ETPIIVGSALCALEQRDPELGLKSV 182

Query: 389 IPLFEAILKYVP 400
             L +A+  Y+P
Sbjct: 183 QKLLDAVDTYIP 194
>d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 Back     information, alignment and structure
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204 Back     information, alignment and structure
>d1r3ea2 d.265.1.2 (A:10-237) Pseudouridine synthase II TruB {Thermotoga maritima [TaxId: 2336]} Length = 228 Back     information, alignment and structure
>d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB {Escherichia coli [TaxId: 562]} Length = 242 Back     information, alignment and structure
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 Back     information, alignment and structure
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 276 Back     information, alignment and structure
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 224 Back     information, alignment and structure
>d2ey4a2 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 245 Back     information, alignment and structure
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 341 Back     information, alignment and structure
>d2apoa2 d.265.1.2 (A:17-246) Pseudouridine synthase II TruB {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 Back     information, alignment and structure
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 222 Back     information, alignment and structure
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 245 Back     information, alignment and structure
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205 Back     information, alignment and structure
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 267 Back     information, alignment and structure
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227 Back     information, alignment and structure
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195 Back     information, alignment and structure
>d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 138 Back     information, alignment and structure
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179 Back     information, alignment and structure
>d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 103 Back     information, alignment and structure
>d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]} Length = 89 Back     information, alignment and structure
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244 Back     information, alignment and structure
>d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 96 Back     information, alignment and structure
>d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II {Thermus thermophilus [TaxId: 274]} Length = 121 Back     information, alignment and structure
>d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 117 Back     information, alignment and structure
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 Back     information, alignment and structure
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 Back     information, alignment and structure
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 Back     information, alignment and structure
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 Back     information, alignment and structure
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 Back     information, alignment and structure
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 Back     information, alignment and structure
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 Back     information, alignment and structure
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 Back     information, alignment and structure
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 Back     information, alignment and structure
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 Back     information, alignment and structure
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 Back     information, alignment and structure
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 Back     information, alignment and structure
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 Back     information, alignment and structure
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 Back     information, alignment and structure
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query793
d1sgva2233 Pseudouridine synthase II TruB {Mycobacterium tube 100.0
d1k8wa5242 Pseudouridine synthase II TruB {Escherichia coli [ 100.0
d1r3ea2228 Pseudouridine synthase II TruB {Thermotoga maritim 100.0
d2apoa2230 Pseudouridine synthase II TruB {Archaeon Methanoco 100.0
d2ey4a2245 Pseudouridine synthase II TruB {Archaeon Pyrococcu 100.0
d2bv3a2276 Elongation factor G (EF-G), N-terminal (G) domain 100.0
d1d2ea3196 Elongation factor Tu (EF-Tu), N-terminal (G) domai 100.0
d2c78a3204 Elongation factor Tu (EF-Tu), N-terminal (G) domai 99.97
d2dy1a2267 Elongation factor G (EF-G), N-terminal (G) domain 99.97
d1f60a3239 Elongation factor eEF-1alpha, N-terminal (G) domai 99.97
d1zunb3222 Sulfate adenylate transferase subunit cysN/C, EF-T 99.96
d1jnya3224 Elongation factor eEF-1alpha, N-terminal (G) domai 99.95
d1r5ba3245 Eukaryotic peptide chain release factor ERF2, G do 99.95
d1n0ua2341 Elongation factor 2 (eEF-2), N-terminal (G) domain 99.94
d1wb1a4179 Elongation factor SelB, N-terminal domain {Methano 99.93
d2qn6a3205 Initiation factor eIF2 gamma subunit, N-terminal ( 99.93
d1kk1a3195 Initiation factor eIF2 gamma subunit, N-terminal ( 99.92
d1g7sa4227 Initiation factor IF2/eIF5b, N-terminal (G) domain 99.91
d2bv3a589 Elongation factor G (EF-G) {Thermus thermophilus [ 99.87
d2dy1a596 Elongation factor G (EF-G) {Thermus thermophilus, 99.84
d1wf3a1178 GTPase Era, N-terminal domain {Thermus thermophilu 99.79
d2bv3a1121 Elongation factor G (EF-G), domain II {Thermus the 99.79
d1n0ua5117 Elongation factor 2 (eEF-2) {Baker's yeast (Saccha 99.78
d1mkya2186 Probable GTPase Der, N-terminal and middle domains 99.78
d1mkya1171 Probable GTPase Der, N-terminal and middle domains 99.77
d2dy1a1103 Elongation factor G (EF-G), domain II {Thermus the 99.77
d1n0ua1138 Elongation factor 2 (eEF-2), domain II {Baker's ye 99.72
d2cxxa1184 GTP-binding protein engB {Pyrococcus horikoshii [T 99.71
d1xzpa2160 TrmE GTPase domain {Thermotoga maritima [TaxId: 23 99.69
d2gj8a1161 Probable tRNA modification GTPase TrmE (MnmE), G d 99.69
d1udxa2180 Obg GTP-binding protein middle domain {Thermus the 99.68
d1fzqa_176 ADP-ribosylation factor {Mouse (Mus musculus), ARL 99.65
d2dy1a477 Elongation factor G (EF-G) {Thermus thermophilus, 99.64
d1svia_195 Probable GTPase EngB {Bacillus subtilis [TaxId: 14 99.63
d1ksha_165 ADP-ribosylation factor {Mouse (Mus musculus), ARL 99.61
d1lnza2185 Obg GTP-binding protein middle domain {Bacillus su 99.61
d1zd9a1164 ADP-ribosylation factor {Human (Homo sapiens), ARL 99.6
d3raba_169 Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} 99.58
d1e0sa_173 ADP-ribosylation factor {Human (Homo sapiens), ARF 99.58
d1moza_182 ADP-ribosylation factor {Baker's yeast (Saccharomy 99.55
d1yzqa1164 Rab6 {Human (Homo sapiens) [TaxId: 9606]} 99.55
d1z0fa1166 Rab14 {Human (Homo sapiens) [TaxId: 9606]} 99.55
d1z2aa1164 Rab23 {Mouse (Mus musculus) [TaxId: 10090]} 99.53
d2gjsa1168 Rad {Human (Homo sapiens) [TaxId: 9606]} 99.53
d2ew1a1171 Rab30 {Human (Homo sapiens) [TaxId: 9606]} 99.52
d2bmea1174 Rab4a {Human (Homo sapiens) [TaxId: 9606]} 99.52
d2fu5c1173 Rab8a {Mouse (Mus musculus) [TaxId: 10090]} 99.52
d1egaa1179 GTPase Era, N-terminal domain {Escherichia coli [T 99.52
d1z0ja1167 Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} 99.51
d2f9la1175 Rab11b {Human (Homo sapiens) [TaxId: 9606]} 99.51
d2bcgy1194 GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi 99.51
d2fn4a1173 r-Ras {Human (Homo sapiens) [TaxId: 9606]} 99.51
d2g6ba1170 Rab26 {Human (Homo sapiens) [TaxId: 9606]} 99.5
d2bv3a475 Elongation factor G (EF-G) {Thermus thermophilus [ 99.5
d1r2qa_170 Rab5a {Human (Homo sapiens) [TaxId: 9606]} 99.5
d1i2ma_170 Ran {Human (Homo sapiens) [TaxId: 9606]} 99.5
d1ky3a_175 Rab-related protein ypt7p {Baker's yeast (Saccharo 99.49
d1kmqa_177 RhoA {Human (Homo sapiens) [TaxId: 9606]} 99.48
d1ek0a_170 Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T 99.48
d2f7sa1186 Rab27b {Human (Homo sapiens) [TaxId: 9606]} 99.47
d1u8za_168 Ras-related protein RalA {Cotton-top tamarin (Sagu 99.47
d1kaoa_167 Rap2a {Human (Homo sapiens) [TaxId: 9606]} 99.47
d1x3sa1177 Rab18 {Human (Homo sapiens) [TaxId: 9606]} 99.47
d2erxa1171 di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 99.47
d1g16a_166 Rab-related protein Sec4 {Baker's yeast (Saccharom 99.47
d1nrjb_209 Signal recognition particle receptor beta-subunit 99.47
d2erya1171 r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 99.47
d1n0ua479 Elongation factor 2 (eEF-2) {Baker's yeast (Saccha 99.45
d1ctqa_166 cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 99.45
d1r8sa_160 ADP-ribosylation factor {Human (Homo sapiens), ARF 99.44
d2atxa1185 RhoQ {Human (Homo sapiens) [TaxId: 9606]} 99.44
d1x1ra1169 Ras-related protein M-Ras (XRas) {Mouse (Mus muscu 99.44
d1vg8a_184 Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} 99.44
d1puia_188 Probable GTPase EngB {Escherichia coli [TaxId: 562 99.43
d1c1ya_167 Rap1A {Human (Homo sapiens) [TaxId: 9606]} 99.43
d1xtqa1167 GTP-binding protein RheB {Human (Homo sapiens) [Ta 99.42
d1zj6a1177 ADP-ribosylation factor {Human (Homo sapiens), ARL 99.42
d2a5ja1173 Rab2b {Human (Homo sapiens) [TaxId: 9606]} 99.41
d1z08a1167 Rab21 {Human (Homo sapiens) [TaxId: 9606]} 99.41
d1wmsa_174 Rab9a {Human (Homo sapiens) [TaxId: 9606]} 99.41
d1mh1a_183 Rac {Human (Homo sapiens) [TaxId: 9606]} 99.4
d1yrba1244 ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss 99.39
d2qtvb1166 SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.38
d2ngra_191 CDC42 {Human (Homo sapiens) [TaxId: 9606]} 99.38
d1f60a194 Elongation factor eEF-1alpha, domain 2 {Baker's ye 99.38
d2atva1168 Ras-like estrogen-regulated growth inhibitor, RERG 99.36
d2fh5b1207 Signal recognition particle receptor beta-subunit 99.36
d1tq4a_400 Interferon-inducible GTPase {Mouse (Mus musculus) 99.35
d1upta_169 ADP-ribosylation factor {Human (Homo sapiens), ARL 99.34
d1z06a1165 Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} 99.32
d2bmja1175 Centaurin gamma 1, G domain {Human (Homo sapiens) 99.31
d2g3ya1172 GTP-binding protein GEM {Human (Homo sapiens) [Tax 99.3
d1f6ba_186 SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 99.28
d1m7ba_179 RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} 99.28
d1jnya195 Elongation factor eEF-1alpha, domain 2 {Archaeon S 99.28
d2c78a1100 Elongation factor Tu (EF-Tu), domain 2 {Thermus th 99.24
d1efca192 Elongation factor Tu (EF-Tu), domain 2 {Escherichi 99.22
d1d2ea198 Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos t 99.21
d1zcba2200 Transducin (alpha subunit) {Mouse (Mus musculus) [ 99.18
d1svsa1195 Transducin (alpha subunit) {Rat (Rattus norvegicus 99.15
d1r5ba195 Eukaryotic peptide chain release factor ERF2, post 99.12
d1zunb192 Sulfate adenylate transferase subunit cysN/C, EF-T 99.11
d1wb1a192 Elongation factor SelB, domains 2 and 4 {Methanoco 99.08
d2p67a1327 LAO/AO transport system kinase ArgK {Escherichia c 99.03
d1xe1a_91 Hypothetical protein PF0907 {Pyrococcus furiosus [ 99.0
d1kk1a1121 Initiation factor eIF2 gamma subunit, domain II {A 99.0
d2bcjq2200 Transducin (alpha subunit) {Mouse (Mus musculus) [ 98.98
d1h65a_257 Chloroplast protein translocon GTPase Toc34 {Garde 98.97
d2qm8a1323 Metallochaperone MeaB {Methylobacterium extorquens 98.93
d1s0ua1118 Initiation factor eIF2 gamma subunit, domain II {A 98.85
d1azta2221 Transducin (alpha subunit) {Cow (Bos taurus) [TaxI 98.79
d2qn6a1114 Initiation factor eIF2 gamma subunit, domain II {S 98.49
d1jwyb_306 Dynamin G domain {Dictyostelium discoideum [TaxId: 98.3
d2akab1299 Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 98.27
d1ni3a1296 YchF GTP-binding protein N-terminal domain {Fissio 98.12
d1wxqa1319 GTP-binding protein PH0525 {Pyrococcus horikoshii 98.11
d1jala1278 YchF GTP-binding protein N-terminal domain {Haemop 97.95
d1puja_273 Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 97.83
d1g7sa2128 Initiation factor IF2/eIF5b, domains 2 and 4 {Arch 97.78
d1u0la2225 Probable GTPase EngC (YjeQ), C-terminal domain {Th 97.62
d1puja_273 Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 97.55
d1j8yf2211 GTPase domain of the signal sequence recognition p 97.4
d1g7sa1101 Initiation factor IF2/eIF5b, domains 2 and 4 {Arch 97.34
d2qy9a2211 GTPase domain of the signal recognition particle r 97.31
d1t9ha2231 Probable GTPase EngC (YjeQ), C-terminal domain {Ba 97.27
d1u0la2225 Probable GTPase EngC (YjeQ), C-terminal domain {Th 97.19
d1vmaa2213 GTPase domain of the signal recognition particle r 97.16
d1okkd2207 GTPase domain of the signal recognition particle r 97.13
d1nija1222 Hypothetical protein YjiA, N-terminal domain {Esch 96.97
d1t9ha2231 Probable GTPase EngC (YjeQ), C-terminal domain {Ba 96.9
d1ls1a2207 GTPase domain of the signal sequence recognition p 96.89
d1d1na_99 Initiation factor IF2/eIF5b, domains 2 and 4 {Baci 96.69
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 95.9
d1v9fa_250 Ribosomal large subunit pseudouridine synthase D, 95.67
d1v9ka_227 Ribosomal large subunit pseudouridine synthase C, 95.39
d1vi7a271 Hypothetical protein YigZ, C-terminal domain {Esch 93.82
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 93.64
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 93.42
d1t95a373 Hypothetical protein AF0491, C-terminal domain {Ar 93.03
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 92.76
d1vioa1174 Ribosomal small subunit pseudouridine 516 synthase 92.75
d1g3qa_237 Cell division regulator MinD {Archaeon Pyrococcus 91.88
d1f5na2277 Interferon-induced guanylate-binding protein 1 (GB 91.7
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 91.53
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 91.42
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 90.54
d1kska4172 Ribosomal small subunit pseudouridine 516 synthase 90.5
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 89.9
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 89.7
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 89.68
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 89.64
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 89.46
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 88.62
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 88.06
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 87.8
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 87.58
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 86.93
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 86.89
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 86.0
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 85.91
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 85.85
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 85.32
d1hyqa_232 Cell division regulator MinD {Archaeon Archaeoglob 85.31
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 85.29
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 85.27
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 85.14
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 85.05
d3b60a1253 Multidrug resistance ABC transporter MsbA, C-termi 84.61
d3dhwc1240 Methionine import ATP-binding protein MetN {Escher 84.58
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 84.16
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 84.14
d1l2ta_230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 84.0
d1mv5a_242 Multidrug resistance ABC transporter LmrA, C-termi 83.99
d1sgwa_200 Putative ABC transporter PF0895 {Pyrococcus furios 83.88
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 83.82
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 83.81
d1g2912240 Maltose transport protein MalK, N-terminal domain 83.8
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 83.51
d1jj7a_251 Peptide transporter Tap1, C-terminal ABC domain {H 83.19
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 83.14
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 83.01
d1r0wa_281 Cystic fibrosis transmembrane conductance regulato 82.91
d2awna2232 Maltose transport protein MalK, N-terminal domain 82.78
d1uj2a_213 Uridine-cytidine kinase 2 {Human (Homo sapiens) [T 82.44
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 82.29
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 82.27
d1l7vc_231 ABC transporter involved in vitamin B12 uptake, Bt 82.07
d1v43a3239 Hypothetical protein PH0022, N-terminal domain {Py 82.04
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 81.51
d1ji0a_240 Branched chain aminoacid ABC transporter {Thermoto 81.45
d2hyda1255 Putative multidrug export ATP-binding/permease pro 81.34
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 80.6
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 80.38
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 80.09
>d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase II TruB
domain: Pseudouridine synthase II TruB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.3e-63  Score=510.57  Aligned_cols=207  Identities=34%  Similarity=0.556  Sum_probs=172.0

Q ss_pred             CcceEEEeeCCCCCChHHHHHHHHHHhccccccCCCCCCCCCcceeeeeecccccccchhccCCceEEEEEEEceeeccC
Q psy1760           8 PVSVVIPKYKPYGLSSNNALKKIKYLLNAKKVGYTGTLDPFATGLLPLCFGEATKFSNYLSEADKYYEAIIHLGITTETG   87 (793)
Q Consensus         8 ~~~g~~~~~Kp~g~ts~~~v~~~~~~~~~~k~gh~gtLDp~a~G~l~~~~g~~tk~~~~~~~~~K~Y~~~~~~g~~t~t~   87 (793)
                      +-||||+||||.|||||+||+++||.|+.+|+||+|||||+||||||||+|+|||+++|+++.+|+|+++++||.+|||+
T Consensus         2 ~~~G~l~v~KP~G~TS~~~v~~vk~~~~~kKvGh~GTLDP~AtGvL~i~ig~aTK~~~~~~~~~K~Y~~~~~lG~~TdT~   81 (233)
T d1sgva2           2 TGPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAPKSYAATIRLGQTTSTE   81 (233)
T ss_dssp             CCSEEEEEEECTTCCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGTTTSCEEEEEEEEETEEETTS
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHhCcCccccCcCCCCcceeeEEEEechhhhhhhhhccCceEEEEEEEEccccccc
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceEeeccCCCCCCHHHHHHHHHHhHhhhcCCCcccccccccCcchhhhhccCccccccceeEEEEEEEEEeecC---
Q psy1760          88 DIEGKIIDFNKNIPNSIEIIEKILINFHGKISQIPPMYSALKYKGIPLYKYARSGITIKRKLRYIKIYKITIIDYTI---  164 (793)
Q Consensus        88 d~~g~~~~~~~~~~~t~~~~~~al~~~~G~~~q~pp~~Sa~k~~g~~~y~~ar~g~~v~~~~r~v~i~~~~~~d~~~---  164 (793)
                      |++|+++++.+..++|.+++++++++|+|.++|+||+|||+|+||+|||+|||+|+.+++++|.+.||.+++++|+.   
T Consensus        82 D~~G~vi~~~~~~~~t~~~i~~~l~~f~G~~~Q~PP~ySAvKv~GkraYelAR~G~~~~~~~r~v~I~~~~l~~~~~~~~  161 (233)
T d1sgva2          82 DAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQ  161 (233)
T ss_dssp             BTTSCEEEECCCTTCCHHHHHHHHHHTCEEC----------------------------CCCCCCEEEEEEEEEEEEETT
T ss_pred             ccccceeeeeccccchHHHHHHHHHhcCCcEEeeccHHHHhhccChHHHHHHHhCCcccccccceeeeeEEEEeeccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999865   


Q ss_pred             -CceeeEEeccchhHHHHHHHHHhhhhccchHHHHHHhhccccccccccee
Q psy1760         165 -PYLTLRIHCSKGTYIRVLSEDIGKMLGCGAHLKYLRRIGIDKLTLDKNIA  214 (793)
Q Consensus       165 -~~~~~~~~~s~gtyIRsL~~dIg~~L~~~a~l~~LRRt~~g~f~le~nIa  214 (793)
                       +.+.|++.||+|||||+|++|||+.|+++||+..|||+++|+|.++..+.
T Consensus       162 ~~~~~~~v~Cs~GTYIRsLa~DiG~~Lg~~A~l~~LrRt~~G~F~~~~a~~  212 (233)
T d1sgva2         162 LIDIDVEIDCSSGTYIRALARDLGDALGVGGHVTALRRTRVGRFELDQARS  212 (233)
T ss_dssp             EEEEEEEEEESCCTTHHHHHHHHHHHHTSCEEEEEEEEEEETTEEGGGCBC
T ss_pred             ceEEEEEEEECchhHHHHHHHHHHHHhCCcEEEEEeEeeeEcCCCHHHccC
Confidence             46788999999999999999999999999999999999999998877653
>d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r3ea2 d.265.1.2 (A:10-237) Pseudouridine synthase II TruB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2apoa2 d.265.1.2 (A:17-246) Pseudouridine synthase II TruB {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2ey4a2 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Back     information, alignment and structure
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Back     information, alignment and structure
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Back     information, alignment and structure
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]} Back     information, alignment and structure
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II {Thermus thermophilus, EF-G-2 [TaxId: 274]} Back     information, alignment and structure
>d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Back     information, alignment and structure
>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]} Back     information, alignment and structure
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Back     information, alignment and structure
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Back     information, alignment and structure
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Back     information, alignment and structure
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Back     information, alignment and structure
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Back     information, alignment and structure
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Back     information, alignment and structure
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Back     information, alignment and structure
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Back     information, alignment and structure
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2 {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release factor ERF2, post-G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Back     information, alignment and structure
>d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]} Back     information, alignment and structure
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit, domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit, domain II {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit, domain II {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1v9fa_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase D, RluD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v9ka_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase C, RluC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vi7a2 d.58.11.2 (A:138-208) Hypothetical protein YigZ, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1t95a3 d.58.11.3 (A:162-234) Hypothetical protein AF0491, C-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vioa1 d.265.1.3 (A:58-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1kska4 d.265.1.3 (A:60-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Back     information, alignment and structure
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure