Psyllid ID: psy17636

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
YIDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCFELVNLIAKNYWLIQAVGILMCPKSPSRLSLV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHcccHHHHHHHHHHcccEEEccccccccEEcccccccHHHHHHHHHcccccccccEEEEHHHHHccccccHHHHHHHHHcccccccEEEEHHHHHHHHHHHHHHHccccEEEEEccccccccccEEEEEEccccHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHccccccccccccccccHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHccccccHHcccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEEccccccHHHHHHHHccccccccccccccHHHHHcccccccccccHHHHHccccccEEEEEcccHHHHHHHHHHHccccEEEEEccHHHHHHHEEEEEEEEccHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHccccEEEEEEEEccccccccccc
Coil and Loop (DISEMBL)
yidplppidhstiVYEEVEknfyqphediarlTPQEAQELRaksgitvsgadppypvssfghfgFDEVLMKALRKceytsptpiqaqavpaalsgrdiiepqvrsicdhvrpnrqtLLFSATFKKRIEKLARDvltdpikivqgdigeantDITQVVInlpqtqklTWLTHNLVEFLSTGSLLIFVTKKCFELVNLIAKNYWLIQAVGilmcpkspsrlslv
Flexible Loop (DISEMBL)
yidplppidhsTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIEPQVRsicdhvrpnrqtLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCFELVNLIAKNYWLIQAVGILMcpkspsrlslv
Low Complexity Region (SEG)
YIDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCFELVNLIAKNYWLIQAVGILMCPKSPSRLSLV
Disordered region (IsUnstruct)
***********TIVYEEVEKNFYQ******************************YPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCFELVNLIAKNYWLIQAVGILMC**********
Disordered Region (DISOPRED)
YIDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCFELVNLIAKNYWLIQAVGILMCPKSP**LSLV
Disordered Region (DISEMBL)
YIDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCFELVNLIAKNYWLIQAVGILMCPK********
Disordered Region (DISPRO)
**DPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCFELVNLIAKNYWLIQAVGILMCPKS*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
YIDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCFELVNLIAKNYWLIQAVGILMCPKSPSRLSLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
Q7ZY47	947	ATP-dependent RNA helicas	N/A	N/A	0.414	0.097	0.731	9e-33
Q810A7	929	ATP-dependent RNA helicas	yes	N/A	0.436	0.104	0.663	3e-31
Q5R7D1	942	ATP-dependent RNA helicas	yes	N/A	0.427	0.100	0.663	3e-31
Q86XP3	938	ATP-dependent RNA helicas	yes	N/A	0.427	0.101	0.663	3e-31
Q5F485	944	ATP-dependent RNA helicas	yes	N/A	0.427	0.100	0.653	1e-30
Q54IV3	986	Probable ATP-dependent RN	yes	N/A	0.436	0.098	0.530	8e-24
O22907	760	DEAD-box ATP-dependent RN	yes	N/A	0.414	0.121	0.516	5e-21
Q10MH8	770	DEAD-box ATP-dependent RN	yes	N/A	0.414	0.119	0.494	1e-20
Q4TVV3	1018	Probable ATP-dependent RN	no	N/A	0.427	0.093	0.447	5e-17
Q501J6	650	Probable ATP-dependent RN	no	N/A	0.373	0.127	0.511	2e-15

>sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopus laevis GN=ddx42 PE=2 SV=1

 Score =  140 bits (352), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 78/93 (83%), Gaps = 1/93 (1%)

Query: 99  IEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVI 158
            E QVRSI +HVRP+RQTLLFSATF+K+IEKLARD+L DPI++VQGDIGEAN DITQVV 
Sbjct: 414 FEYQVRSIANHVRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQVVE 473

Query: 159 NLPQT-QKLTWLTHNLVEFLSTGSLLIFVTKKC 190
            LP   +K TWLT  LVEF STGS+L+FVTKK 
Sbjct: 474 ILPSGPEKWTWLTRRLVEFTSTGSVLVFVTKKA 506

ATP-dependent RNA helicase. Binds to RNA. May be involved in the survival of cells.
Xenopus laevis (taxid: 8355)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3

>sp|Q810A7|DDX42_MOUSE ATP-dependent RNA helicase DDX42 OS=Mus musculus GN=Ddx42 PE=1 SV=3

 Score =  135 bits (339), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/98 (66%), Positives = 71/98 (72%)

Query: 2   IDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFG 61
           IDPLPPIDHS I Y   EKNFY  HE+I  LTPQ+  +LR K  + VSGA PP P SSF 
Sbjct: 197 IDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFA 256

Query: 62  HFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
           HFGFDE LM  +RK EYT PTPIQ Q VP ALSGRD+I
Sbjct: 257 HFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMI 294

ATP-dependent RNA helicase. Binds to partially double-stranded RNAs (dsRNAs) in order to unwind RNA secondary structures. Unwinding is promoted in the presence of single-strand binding proteins. Mediates also RNA duplex formation thereby displacing the single-strand RNA binding protein. ATP and ADP modulate its activity: ATP binding and hydrolysis by DDX42 triggers RNA strand separation, whereas the ADP-bound form of the protein triggers annealing of complementary RNA strands. Involved in the survival of cells by interacting with TP53BP2 and thereby counteracting the apoptosis-stimulating activity of TP53BP2. Relocalizes TP53BP2 to the cytoplasm.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q5R7D1|DDX42_PONAB ATP-dependent RNA helicase DDX42 OS=Pongo abelii GN=DDX42 PE=2 SV=1

 Score =  135 bits (339), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/98 (66%), Positives = 71/98 (72%)

Query: 2   IDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFG 61
           IDPLPPIDHS I Y   EKNFY  HE+I  LTPQ+  +LR K  + VSGA PP P SSF 
Sbjct: 197 IDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFA 256

Query: 62  HFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
           HFGFDE LM  +RK EYT PTPIQ Q VP ALSGRD+I
Sbjct: 257 HFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMI 294

ATP-dependent RNA helicase. Binds to partially double-stranded RNAs (dsRNAs) in order to unwind RNA secondary structures. Unwinding is promoted in the presence of single-strand binding proteins. Mediates also RNA duplex formation thereby displacing the single-strand RNA binding protein. ATP and ADP modulate its activity: ATP binding and hydrolysis by DDX42 triggers RNA strand separation, whereas the ADP-bound form of the protein triggers annealing of complementary RNA strands. Involved in the survival of cells by interacting with TP53BP2 and thereby counteracting the apoptosis-stimulating activity of TP53BP2. Relocalizes TP53BP2 to the cytoplasm.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q86XP3|DDX42_HUMAN ATP-dependent RNA helicase DDX42 OS=Homo sapiens GN=DDX42 PE=1 SV=1

 Score =  134 bits (338), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/98 (66%), Positives = 71/98 (72%)

Query: 2   IDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFG 61
           IDPLPPIDHS I Y   EKNFY  HE+I  LTPQ+  +LR K  + VSGA PP P SSF 
Sbjct: 197 IDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFA 256

Query: 62  HFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
           HFGFDE LM  +RK EYT PTPIQ Q VP ALSGRD+I
Sbjct: 257 HFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMI 294

ATP-dependent RNA helicase. Binds to partially double-stranded RNAs (dsRNAs) in order to unwind RNA secondary structures. Unwinding is promoted in the presence of single-strand binding proteins. Mediates also RNA duplex formation thereby displacing the single-strand RNA binding protein. ATP and ADP modulate its activity: ATP binding and hydrolysis by DDX42 triggers RNA strand separation, whereas the ADP-bound form of the protein triggers annealing of complementary RNA strands. Involved in the survival of cells by interacting with TP53BP2 and thereby counteracting the apoptosis-stimulating activity of TP53BP2. Relocalizes TP53BP2 to the cytoplasm.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q5F485|DDX42_CHICK ATP-dependent RNA helicase DDX42 OS=Gallus gallus GN=DDX42 PE=2 SV=1

 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 70/98 (71%)

Query: 2   IDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFG 61
           IDPLPPIDHS I Y   EKNFY  HE+I  LTPQ+  ELR K  + VSGA PP P SSF 
Sbjct: 197 IDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFA 256

Query: 62  HFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
            FGFDE LM  +RK EYT PTPIQ Q VP A+SGRD+I
Sbjct: 257 RFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMI 294

ATP-dependent RNA helicase. Binds to RNA. May be involved in the survival of cells.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42 OS=Dictyostelium discoideum GN=ddx42 PE=3 SV=1

 Score =  110 bits (275), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 69/98 (70%)

Query: 2   IDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFG 61
           I+PLPPIDHS   Y E  K FY+ H DIA LT ++  E+R    I ++G D   PV+SFG
Sbjct: 249 IEPLPPIDHSKEEYIEFNKIFYEEHPDIANLTEEQVFEIRKNLDIRMTGTDLINPVTSFG 308

Query: 62  HFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
           H+GFD++L++A+ K    +PTPIQ QA+P ALSGRD+I
Sbjct: 309 HYGFDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLI 346

probable ATP-dependent RNA helicase which may bind to partially double-stranded RNAs (dsRNAs) in order to unwind RNA secondary structures.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana GN=RH24 PE=1 SV=2

 Score =  101 bits (251), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 65/93 (69%), Gaps = 1/93 (1%)

Query: 99  IEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVI 158
            EPQVRSI   +RP+RQTLLFSAT   ++EKLAR++L+DPI++  G++G AN DITQVV 
Sbjct: 392 FEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVN 451

Query: 159 NLP-QTQKLTWLTHNLVEFLSTGSLLIFVTKKC 190
            +P   +KL WL   L   +  G +L+F +KK 
Sbjct: 452 VIPSDAEKLPWLLEKLPGMIDEGDVLVFASKKA 484

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q10MH8|RH24_ORYSJ DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp. japonica GN=Os03g0308500 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 62/93 (66%), Gaps = 1/93 (1%)

Query: 99  IEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVI 158
            EPQ+RSI   +RP+RQTLLFSAT   ++E+LAR++LTDPI++  G +G AN DI QVV 
Sbjct: 383 FEPQIRSIVGQIRPDRQTLLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVN 442

Query: 159 NLP-QTQKLTWLTHNLVEFLSTGSLLIFVTKKC 190
            LP   +K+ WL   L   +  G +L+F  KK 
Sbjct: 443 VLPSDAEKMPWLLEKLPGMIDDGDVLVFAAKKA 475

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio GN=ddx46 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 60/96 (62%), Gaps = 1/96 (1%)

Query: 5   LPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAK-SGITVSGADPPYPVSSFGHF 63
           L P+DH  I YE   KNFY    ++AR++P+E  E R +  GI+V G   P P+ ++   
Sbjct: 286 LEPVDHQKIQYEPFRKNFYVEVPELARMSPEEVSEYRLELEGISVKGKGCPKPIKTWVQC 345

Query: 64  GFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
           G    ++ AL+K  Y  PTPIQAQA+PA +SGRD+I
Sbjct: 346 GISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLI 381

Plays an essential role in splicing, either prior to, or during A complex formation.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17 OS=Mus musculus GN=Ddx17 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 52/84 (61%), Gaps = 1/84 (1%)

Query: 17  EVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGAD-PPYPVSSFGHFGFDEVLMKALRK 75
           + EKNFY  H ++ARLTP E  ELR K  ITV G D  P PV +F H  F + +M  L  
Sbjct: 50  KFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMD 109

Query: 76  CEYTSPTPIQAQAVPAALSGRDII 99
             +T PTPIQ Q  P ALSGRD++
Sbjct: 110 QHFTEPTPIQCQGFPLALSGRDMV 133

RNA-dependent ATPase activity. Involved in transcriptional regulation. Transcriptional coactivator for estrogen receptor ESR1. Increases ESR1 AF-1 domain-mediated transactivation (By similarity). Synergizes with DDX5 and SRA1 RNA to activate MYOD1 transcriptional activity and probably involved in skeletal muscle differentiation.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
193573502	737	PREDICTED: ATP-dependent RNA helicase DD	0.409	0.123	0.747	6e-35
350426308	774	PREDICTED: ATP-dependent RNA helicase DD	0.436	0.125	0.742	2e-34
340723638	774	PREDICTED: ATP-dependent RNA helicase DD	0.436	0.125	0.742	2e-34
383857449	774	PREDICTED: ATP-dependent RNA helicase DD	0.436	0.125	0.742	4e-34
380022612	772	PREDICTED: LOW QUALITY PROTEIN: ATP-depe	0.436	0.125	0.732	5e-34
66522071	772	PREDICTED: ATP-dependent RNA helicase DD	0.436	0.125	0.732	5e-34
195127173	797	GI12051 [Drosophila mojavensis] gi|19391	0.423	0.117	0.714	6e-34
195376889	797	GJ13322 [Drosophila virilis] gi|19415438	0.423	0.117	0.724	1e-33
345487283	793	PREDICTED: ATP-dependent RNA helicase DD	0.436	0.122	0.742	1e-33
357613478	757	hypothetical protein KGM_00706 [Danaus p	0.432	0.126	0.666	1e-33

>gi|193573502|ref|XP_001943796.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Acyrthosiphon pisum]

 Score =  153 bits (386), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 68/91 (74%), Positives = 82/91 (90%)

Query: 99  IEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVI 158
            EPQVRSICDHVRP+RQTLLFSATFKK+IEKLARD+LTDPI+IVQGD+GEANTD+ Q+++
Sbjct: 406 FEPQVRSICDHVRPDRQTLLFSATFKKKIEKLARDILTDPIRIVQGDVGEANTDVAQIML 465

Query: 159 NLPQTQKLTWLTHNLVEFLSTGSLLIFVTKK 189
            +PQ+ K  WL  NLV+F STGS+L+FVTKK
Sbjct: 466 VMPQSDKCQWLLDNLVQFTSTGSILVFVTKK 496

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350426308|ref|XP_003494399.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Bombus impatiens]

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/101 (74%), Positives = 84/101 (83%), Gaps = 4/101 (3%)

Query: 99  IEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQ--V 156
            EPQVRSIC+HVRP+RQTLLFSATFKKR+EKLARDVLTDP++IVQGD+GEAN D+TQ  +
Sbjct: 419 FEPQVRSICNHVRPDRQTLLFSATFKKRVEKLARDVLTDPVRIVQGDVGEANADVTQHVI 478

Query: 157 VINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKK--CFELVN 195
           V N   T K TWL  NLVEFLS+GSLLIFVTKK    EL N
Sbjct: 479 VFNNNPTGKWTWLLQNLVEFLSSGSLLIFVTKKLNAEELAN 519

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723638|ref|XP_003400196.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Bombus terrestris]

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/101 (74%), Positives = 84/101 (83%), Gaps = 4/101 (3%)

Query: 99  IEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQ--V 156
            EPQVRSIC+HVRP+RQTLLFSATFKKR+EKLARDVLTDP++IVQGD+GEAN D+TQ  +
Sbjct: 419 FEPQVRSICNHVRPDRQTLLFSATFKKRVEKLARDVLTDPVRIVQGDVGEANADVTQHVI 478

Query: 157 VINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKK--CFELVN 195
           V N   T K TWL  NLVEFLS+GSLLIFVTKK    EL N
Sbjct: 479 VFNNNPTGKWTWLLQNLVEFLSSGSLLIFVTKKLNAEELAN 519

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857449|ref|XP_003704217.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Megachile rotundata]

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 75/101 (74%), Positives = 83/101 (82%), Gaps = 4/101 (3%)

Query: 99  IEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQ--V 156
            EPQVRSIC+HVRP+RQTLLFSATFKKR+EKLARDVLTDP++IVQGD+GEAN D+TQ  +
Sbjct: 419 FEPQVRSICNHVRPDRQTLLFSATFKKRVEKLARDVLTDPVRIVQGDVGEANADVTQHVI 478

Query: 157 VINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKK--CFELVN 195
           V N   T K TWL  NLVEFLS GSLLIFVTKK    EL N
Sbjct: 479 VFNNNPTGKWTWLLQNLVEFLSAGSLLIFVTKKLNAEELAN 519

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022612|ref|XP_003695134.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX42-like [Apis florea]

 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 74/101 (73%), Positives = 83/101 (82%), Gaps = 4/101 (3%)

Query: 99  IEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQ--V 156
            EPQVRSIC+HVRP+RQTLLFSATFKKR+EKLARDVLTDP++IVQGD+GEAN D+TQ  +
Sbjct: 419 FEPQVRSICNHVRPDRQTLLFSATFKKRVEKLARDVLTDPVRIVQGDVGEANADVTQHVI 478

Query: 157 VINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKK--CFELVN 195
           V N   T K TWL  NL+EFLS GSLLIFVTKK    EL N
Sbjct: 479 VFNNNPTGKWTWLLQNLIEFLSAGSLLIFVTKKLNAEELAN 519

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66522071|ref|XP_624210.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Apis mellifera]

 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 74/101 (73%), Positives = 83/101 (82%), Gaps = 4/101 (3%)

Query: 99  IEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQ--V 156
            EPQVRSIC+HVRP+RQTLLFSATFKKR+EKLARDVLTDP++IVQGD+GEAN D+TQ  +
Sbjct: 419 FEPQVRSICNHVRPDRQTLLFSATFKKRVEKLARDVLTDPVRIVQGDVGEANADVTQHVI 478

Query: 157 VINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKK--CFELVN 195
           V N   T K TWL  NL+EFLS GSLLIFVTKK    EL N
Sbjct: 479 VFNNNPTGKWTWLLQNLIEFLSAGSLLIFVTKKLNAEELAN 519

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195127173|ref|XP_002008043.1| GI12051 [Drosophila mojavensis] gi|193919652|gb|EDW18519.1| GI12051 [Drosophila mojavensis]

 Score =  149 bits (377), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 70/98 (71%), Positives = 80/98 (81%)

Query: 2   IDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFG 61
           IDPLPPI HS I YE  E+NFY PHEDIA+L  ++ +ELR   G+ VSGA PP PV+SFG
Sbjct: 219 IDPLPPIYHSEIEYEPFERNFYTPHEDIAQLNEEQVRELRHTLGVKVSGAQPPKPVTSFG 278

Query: 62  HFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
           HFGFD+ L+KA+RK EYT PTPIQAQAVPAALSGRDII
Sbjct: 279 HFGFDDQLLKAVRKAEYTQPTPIQAQAVPAALSGRDII 316

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195376889|ref|XP_002047225.1| GJ13322 [Drosophila virilis] gi|194154383|gb|EDW69567.1| GJ13322 [Drosophila virilis]

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/98 (72%), Positives = 80/98 (81%)

Query: 2   IDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFG 61
           IDPLPPI HS I YE  E+NFY PHEDIA+L  ++ +ELR   G+ VSGA PP PVSSFG
Sbjct: 223 IDPLPPIYHSEIDYEPFERNFYTPHEDIAQLDEEQVRELRRTLGVKVSGALPPKPVSSFG 282

Query: 62  HFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
           HFGFDE L+K++RK EYT PTPIQAQAVPAALSGRDII
Sbjct: 283 HFGFDEQLLKSVRKAEYTQPTPIQAQAVPAALSGRDII 320

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487283|ref|XP_001603249.2| PREDICTED: ATP-dependent RNA helicase DDX42-like [Nasonia vitripennis]

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/101 (74%), Positives = 84/101 (83%), Gaps = 4/101 (3%)

Query: 99  IEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVI 158
            EPQVRSIC+HVRP+RQTLLFSATFKKRIEKLARD LTDPI+IVQGD+GEANTD+TQ VI
Sbjct: 419 FEPQVRSICNHVRPDRQTLLFSATFKKRIEKLARDALTDPIRIVQGDVGEANTDVTQHVI 478

Query: 159 NLPQ--TQKLTWLTHNLVEFLSTGSLLIFVTKK--CFELVN 195
              +  T K TWL  N+VE+LS+GSLLIFVTKK    EL N
Sbjct: 479 VFYKNPTGKWTWLNQNIVEYLSSGSLLIFVTKKLNAEELAN 519

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357613478|gb|EHJ68531.1| hypothetical protein KGM_00706 [Danaus plexippus]

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/99 (66%), Positives = 77/99 (77%)

Query: 1   YIDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSF 60
           +IDPLPPIDHS I YE  EKNFY PHEDI +L   + +EL+   G+ +SG DPP PVSSF
Sbjct: 202 FIDPLPPIDHSEIQYEPFEKNFYTPHEDIEKLEQHQVEELKKNLGVKISGPDPPKPVSSF 261

Query: 61  GHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
           GH GFDE LMKA+RK EYT PTP+QA  +PAALSGRD+I
Sbjct: 262 GHLGFDEQLMKAIRKSEYTQPTPVQAAGIPAALSGRDLI 300

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
FB|FBgn0036104	791	CG6418 [Drosophila melanogaste	0.441	0.123	0.683	3.7e-63
UNIPROTKB|F1P0H1	703	DDX42 "ATP-dependent RNA helic	0.441	0.139	0.663	1.2e-60
UNIPROTKB|F1NJ40	946	DDX42 "ATP-dependent RNA helic	0.441	0.103	0.663	4.8e-60
UNIPROTKB|E1BJD2	946	DDX42 "Uncharacterized protein	0.441	0.103	0.663	4.9e-60
ZFIN|ZDB-GENE-050706-53	910	ddx42 "DEAD (Asp-Glu-Ala-Asp)	0.468	0.114	0.675	1.1e-59
RGD|1304909	929	Ddx42 "DEAD (Asp-Glu-Ala-Asp)	0.441	0.105	0.663	3.2e-59
UNIPROTKB|E2RFF1	933	DDX42 "Uncharacterized protein	0.441	0.105	0.663	3.2e-59
UNIPROTKB|Q86XP3	938	DDX42 "ATP-dependent RNA helic	0.441	0.104	0.663	3.3e-59
UNIPROTKB|Q5R7D1	942	DDX42 "ATP-dependent RNA helic	0.441	0.104	0.663	3.3e-59
UNIPROTKB|Q5F485	944	DDX42 "ATP-dependent RNA helic	0.441	0.103	0.653	3.5e-59

FB|FBgn0036104 CG6418 [Drosophila melanogaster (taxid:7227)]

 Score = 350 (128.3 bits), Expect = 3.7e-63, Sum P(2) = 3.7e-63
 Identities = 67/98 (68%), Positives = 76/98 (77%)

Query:     2 IDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFG 61
             IDPLPPI HS I YE  EKNFY  H+DIA L  ++ +ELR   G+ V+G  PP PV+SFG
Sbjct:   213 IDPLPPIYHSEIEYEPFEKNFYTQHDDIAALDDEQVRELRRTLGVKVTGPSPPKPVTSFG 272

Query:    62 HFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
             HFGFDE L+KA+RK EYT PTPIQAQAVP ALSGRDII
Sbjct:   273 HFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDII 310

GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS

GO:0004386 "helicase activity" evidence=ISS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1P0H1 DDX42 "ATP-dependent RNA helicase DDX42" [Gallus gallus (taxid:9031)]

 Score = 337 (123.7 bits), Expect = 1.2e-60, Sum P(2) = 1.2e-60
 Identities = 65/98 (66%), Positives = 71/98 (72%)

Query:     2 IDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFG 61
             IDPLPPIDHS I Y   EKNFY  HE+I  LTPQ+  ELR K  + VSGA PP P SSF 
Sbjct:   192 IDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFA 251

Query:    62 HFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
             HFGFDE LM  +RK EYT PTPIQ Q VP A+SGRD+I
Sbjct:   252 HFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMI 289

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1NJ40 DDX42 "ATP-dependent RNA helicase DDX42" [Gallus gallus (taxid:9031)]

 Score = 337 (123.7 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
 Identities = 65/98 (66%), Positives = 71/98 (72%)

Query:     2 IDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFG 61
             IDPLPPIDHS I Y   EKNFY  HE+I  LTPQ+  ELR K  + VSGA PP P SSF 
Sbjct:   199 IDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFA 258

Query:    62 HFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
             HFGFDE LM  +RK EYT PTPIQ Q VP A+SGRD+I
Sbjct:   259 HFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMI 296

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

UNIPROTKB|E1BJD2 DDX42 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 334 (122.6 bits), Expect = 4.9e-60, Sum P(2) = 4.9e-60
 Identities = 65/98 (66%), Positives = 71/98 (72%)

Query:     2 IDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFG 61
             IDPLPPIDHS I Y   EKNFY  HE+I  LTPQ+  +LR K  + VSGA PP P SSF 
Sbjct:   197 IDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFA 256

Query:    62 HFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
             HFGFDE LM  +RK EYT PTPIQ Q VP ALSGRD+I
Sbjct:   257 HFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMI 294

GO:0008104 "protein localization" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-050706-53 ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42" [Danio rerio (taxid:7955)]

 Score = 334 (122.6 bits), Expect = 1.1e-59, Sum P(2) = 1.1e-59
 Identities = 73/108 (67%), Positives = 83/108 (76%)

Query:   100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVIN 159
             E QVRSI  HVRP+RQTLLFSATF+K+IEKLARD+L DPI++VQGDIGEAN DITQ+V  
Sbjct:   422 EYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQIVEV 481

Query:   160 LPQTQ-KLTWLTHNLVEFLSTGSLLIFVTKK--CFELV-NLIAKNYWL 203
             L   Q K  WLT  LVEF S GS+L+FVTKK  C EL  NLI + Y L
Sbjct:   482 LQSGQDKWGWLTRRLVEFTSAGSVLVFVTKKANCEELATNLIQEGYSL 529

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

RGD|1304909 Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42" [Rattus norvegicus (taxid:10116)]

 Score = 334 (122.6 bits), Expect = 3.2e-59, Sum P(2) = 3.2e-59
 Identities = 65/98 (66%), Positives = 71/98 (72%)

Query:     2 IDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFG 61
             IDPLPPIDHS I Y   EKNFY  HE+I  LTPQ+  +LR K  + VSGA PP P SSF 
Sbjct:   197 IDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFA 256

Query:    62 HFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
             HFGFDE LM  +RK EYT PTPIQ Q VP ALSGRD+I
Sbjct:   257 HFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMI 294

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0008104 "protein localization" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|E2RFF1 DDX42 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 334 (122.6 bits), Expect = 3.2e-59, Sum P(2) = 3.2e-59
 Identities = 65/98 (66%), Positives = 71/98 (72%)

Query:     2 IDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFG 61
             IDPLPPIDHS I Y   EKNFY  HE+I  LTPQ+  +LR K  + VSGA PP P SSF 
Sbjct:   197 IDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFA 256

Query:    62 HFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
             HFGFDE LM  +RK EYT PTPIQ Q VP ALSGRD+I
Sbjct:   257 HFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMI 294

GO:0008104 "protein localization" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q86XP3 DDX42 "ATP-dependent RNA helicase DDX42" [Homo sapiens (taxid:9606)]

 Score = 334 (122.6 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
 Identities = 65/98 (66%), Positives = 71/98 (72%)

Query:     2 IDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFG 61
             IDPLPPIDHS I Y   EKNFY  HE+I  LTPQ+  +LR K  + VSGA PP P SSF 
Sbjct:   197 IDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFA 256

Query:    62 HFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
             HFGFDE LM  +RK EYT PTPIQ Q VP ALSGRD+I
Sbjct:   257 HFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMI 294

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008104 "protein localization" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q5R7D1 DDX42 "ATP-dependent RNA helicase DDX42" [Pongo abelii (taxid:9601)]

 Score = 334 (122.6 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
 Identities = 65/98 (66%), Positives = 71/98 (72%)

Query:     2 IDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFG 61
             IDPLPPIDHS I Y   EKNFY  HE+I  LTPQ+  +LR K  + VSGA PP P SSF 
Sbjct:   197 IDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFA 256

Query:    62 HFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
             HFGFDE LM  +RK EYT PTPIQ Q VP ALSGRD+I
Sbjct:   257 HFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMI 294

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0008104 "protein localization" evidence=ISS

UNIPROTKB|Q5F485 DDX42 "ATP-dependent RNA helicase DDX42" [Gallus gallus (taxid:9031)]

 Score = 329 (120.9 bits), Expect = 3.5e-59, Sum P(2) = 3.5e-59
 Identities = 64/98 (65%), Positives = 70/98 (71%)

Query:     2 IDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFG 61
             IDPLPPIDHS I Y   EKNFY  HE+I  LTPQ+  ELR K  + VSGA PP P SSF 
Sbjct:   197 IDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFA 256

Query:    62 HFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
              FGFDE LM  +RK EYT PTPIQ Q VP A+SGRD+I
Sbjct:   257 RFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMI 294

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008104 "protein localization" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54IV3	DDX42_DICDI	3, ., 6, ., 4, ., 1, 3	0.5306	0.4369	0.0983	yes	N/A
Q5F485	DDX42_CHICK	3, ., 6, ., 4, ., 1, 3	0.6530	0.4279	0.1006	yes	N/A
Q86XP3	DDX42_HUMAN	3, ., 6, ., 4, ., 1, 3	0.6632	0.4279	0.1012	yes	N/A
Q5R7D1	DDX42_PONAB	3, ., 6, ., 4, ., 1, 3	0.6632	0.4279	0.1008	yes	N/A
Q810A7	DDX42_MOUSE	3, ., 6, ., 4, ., 1, 3	0.6632	0.4369	0.1044	yes	N/A
O22907	RH24_ARATH	3, ., 6, ., 4, ., 1, 3	0.5161	0.4144	0.1210	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	222
PTZ00110	545	PTZ00110, PTZ00110, helicase; Provisional	1e-23
PLN00206	518	PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel	2e-13
PTZ00110	545	PTZ00110, PTZ00110, helicase; Provisional	3e-12
COG0513	513	COG0513, SrmB, Superfamily II DNA and RNA helicase	5e-11
cd00268	203	cd00268, DEADc, DEAD-box helicases	7e-11
COG0513	513	COG0513, SrmB, Superfamily II DNA and RNA helicase	5e-10
cd00268	203	cd00268, DEADc, DEAD-box helicases	2e-09
PRK11776	460	PRK11776, PRK11776, ATP-dependent RNA helicase Dbp	2e-08
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	2e-08
PRK10590	456	PRK10590, PRK10590, ATP-dependent RNA helicase Rhl	2e-05
smart00487	201	smart00487, DEXDc, DEAD-like helicases superfamily	2e-05
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	3e-05
PRK11776	460	PRK11776, PRK11776, ATP-dependent RNA helicase Dbp	1e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	4e-04
PRK11634	629	PRK11634, PRK11634, ATP-dependent RNA helicase Dea	4e-04
PRK10590	456	PRK10590, PRK10590, ATP-dependent RNA helicase Rhl	5e-04
pfam00270	169	pfam00270, DEAD, DEAD/DEAH box helicase	0.004

>gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional

 Score = 97.9 bits (244), Expect = 1e-23
 Identities = 41/98 (41%), Positives = 61/98 (62%), Gaps = 1/98 (1%)

Query: 3   DPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGIT-VSGADPPYPVSSFG 61
             L PID  +I     EKNFY+ H +++ L+ +E  E+R +  IT ++G + P PV SF 
Sbjct: 74  KRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFE 133

Query: 62  HFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
           +  F + ++K+L+   +T PTPIQ Q  P ALSGRD+I
Sbjct: 134 YTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMI 171

Length = 545

>gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional

 Score = 68.3 bits (167), Expect = 2e-13
 Identities = 30/69 (43%), Positives = 38/69 (55%)

Query: 31  RLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVP 90
            L+  +A+ LR K  I V G   P P+ SF   G    L+  L    Y  PTPIQ QA+P
Sbjct: 94  GLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIP 153

Query: 91  AALSGRDII 99
           AALSGR ++
Sbjct: 154 AALSGRSLL 162

Length = 518

>gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional

 Score = 64.8 bits (158), Expect = 3e-12
 Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 12/98 (12%)

Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTD-PIKIVQGDIG-EANTDITQVV 157
           EPQ+R I   +RP+RQTL++SAT+ K ++ LARD+  + P+ +  G +   A  +I Q V
Sbjct: 295 EPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEV 354

Query: 158 INLPQTQKLTWLTHNLVEFL-----STGSLLIFV-TKK 189
             + + +K       L   L         +LIFV TKK
Sbjct: 355 FVVEEHEKRG----KLKMLLQRIMRDGDKILIFVETKK 388

Length = 545

>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]

 Score = 61.0 bits (148), Expect = 5e-11
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 5/94 (5%)

Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDP--IKIVQGDIGEANTDITQVV 157
              +  I   + P+RQTLLFSAT    I +LAR  L DP  I++    +      I Q  
Sbjct: 192 IDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFY 251

Query: 158 INLP-QTQKLTWLTHNLVEFLSTGSLLIFV-TKK 189
           + +  + +KL  L   L++    G +++FV TK+
Sbjct: 252 LEVESEEEKLELLLK-LLKDEDEGRVIVFVRTKR 284

Length = 513

>gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases

 Score = 59.0 bits (144), Expect = 7e-11
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
           E Q+R I   +  +RQTLLFSAT  K +  LAR  L +P++I
Sbjct: 161 EDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202

A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203

>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]

 Score = 58.3 bits (141), Expect = 5e-10
 Identities = 16/54 (29%), Positives = 24/54 (44%)

Query: 46 ITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
                        F   G    L++AL+   +  PTPIQ  A+P  L+GRD++
Sbjct: 17 NVALSRGEEKTPPEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVL 70

Length = 513

>gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 60 FGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          F   G    L++ +    +  PTPIQA+A+P  LSGRD+I
Sbjct: 1  FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVI 40

A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203

>gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 104 RSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQT 163
            +I       RQTLLFSAT+ + I  +++    DP   V+ +       I Q    +   
Sbjct: 169 DAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDP-VEVKVESTHDLPAIEQRFYEVSPD 227

Query: 164 QKLTWLTHNLVEFLSTGSLLIFV-TKK-CFELVN 195
           ++L  L   L+      S ++F  TKK C E+ +
Sbjct: 228 ERLPALQRLLLHHQPE-SCVVFCNTKKECQEVAD 260

Length = 460

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 20/39 (51%), Positives = 26/39 (66%)

Query: 60 FGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDI 98
          F     DE L++AL+   YT PT IQA+A+P AL GRD+
Sbjct: 3  FSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDV 41

Length = 434

>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query: 59 SFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          SF   G    +++A+ +  Y  PTPIQ QA+PA L GRD++
Sbjct: 2  SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLM 42

Length = 456

>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQV 156
             Q+  +   +  N Q LL SAT  + IE L    L DP+ I  G        I Q 
Sbjct: 147 GDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGF--TPLEPIEQF 201

Length = 201

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 101 PQVRSICDHVRP--NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVI 158
           PQVR I         RQTLLFSATF   +  LA+   TDP  +       A+  + Q V 
Sbjct: 256 PQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVY 315

Query: 159 NLPQTQKLTWLTHNLVEFLSTGSLLIFVTKK 189
            +  + K   L +NLV       +++F  +K
Sbjct: 316 AVAGSDKYK-LLYNLVTQNPWERVMVFANRK 345

Length = 475

>gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 14/22 (63%), Positives = 19/22 (86%)

Query: 78 YTSPTPIQAQAVPAALSGRDII 99
          YT  TPIQAQ++PA L+G+D+I
Sbjct: 24 YTEMTPIQAQSLPAILAGKDVI 45

Length = 460

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 103 VRSICDHVRPNRQTLLFSATFK-KRIEKLARDVLTDPIKI 141
           + +I    R  +QTLLFSAT +   ++  A  +L DP+++
Sbjct: 168 IETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEV 207

Length = 434

>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 15/42 (35%), Positives = 26/42 (61%)

Query: 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          ++F   G    +++AL    Y  P+PIQA+ +P  L+GRD++
Sbjct: 6  TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVL 47

Length = 629

>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 103 VRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVV 157
           +R +   +   RQ LLFSATF   I+ LA  +L +P++I       A+  +TQ V
Sbjct: 170 IRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHV 224

Length = 456

>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKL 130
              +  I   + P+RQ LL SAT  + +E L
Sbjct: 139 GDDLEEILSRLPPDRQILLLSATLPRNLEDL 169

Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
KOG0339|consensus	731		100.0
KOG0336|consensus	629		100.0
KOG0341|consensus	610		100.0
PTZ00110	545	helicase; Provisional	100.0
KOG0334|consensus	997		100.0
KOG0331|consensus	519		100.0
KOG0333|consensus	673		100.0
KOG0328|consensus	400		100.0
KOG0330|consensus	476		100.0
PLN00206	518	DEAD-box ATP-dependent RNA helicase; Provisional	100.0
COG0513	513	SrmB Superfamily II DNA and RNA helicases [DNA rep	99.97
KOG0338|consensus	691		99.97
KOG0340|consensus	442		99.96
KOG0327|consensus	397		99.96
KOG0343|consensus	758		99.96
KOG0326|consensus	459		99.95
KOG0335|consensus	482		99.95
KOG0346|consensus	569		99.95
KOG0332|consensus	477		99.94
KOG0342|consensus	543		99.94
PRK11634	629	ATP-dependent RNA helicase DeaD; Provisional	99.94
PRK11776	460	ATP-dependent RNA helicase DbpA; Provisional	99.94
KOG0345|consensus	567		99.93
PRK04837	423	ATP-dependent RNA helicase RhlB; Provisional	99.93
PRK10590	456	ATP-dependent RNA helicase RhlE; Provisional	99.93
PRK04537	572	ATP-dependent RNA helicase RhlB; Provisional	99.93
KOG0337|consensus	529		99.92
PRK11192	434	ATP-dependent RNA helicase SrmB; Provisional	99.91
KOG4284|consensus	980		99.9
PRK01297	475	ATP-dependent RNA helicase RhlB; Provisional	99.89
KOG0347|consensus	731		99.89
PTZ00424	401	helicase 45; Provisional	99.87
KOG0344|consensus	593		99.87
KOG0348|consensus	708		99.85
KOG0329|consensus	387		99.75
TIGR03817	742	DECH_helic helicase/secretion neighborhood putativ	99.74
TIGR02621	844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.73
TIGR00614	470	recQ_fam ATP-dependent DNA helicase, RecQ family.	99.57
PLN03137	1195	ATP-dependent DNA helicase; Q4-like; Provisional	99.56
PRK09401	1176	reverse gyrase; Reviewed	99.55
PRK11057	607	ATP-dependent DNA helicase RecQ; Provisional	99.55
TIGR01389	591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	99.54
PRK00254	720	ski2-like helicase; Provisional	99.51
COG1202	830	Superfamily II helicase, archaea-specific [General	99.51
PRK02362	737	ski2-like helicase; Provisional	99.48
PRK10689	1147	transcription-repair coupling factor; Provisional	99.46
PRK14701	1638	reverse gyrase; Provisional	99.44
TIGR00580	926	mfd transcription-repair coupling factor (mfd). Al	99.41
KOG0349|consensus	725		99.4
TIGR01054	1171	rgy reverse gyrase. Generally, these gyrases are e	99.39
COG1201	814	Lhr Lhr-like helicases [General function predictio	99.37
PRK01172	674	ski2-like helicase; Provisional	99.34
PRK13767	876	ATP-dependent helicase; Provisional	99.34
PHA02653	675	RNA helicase NPH-II; Provisional	99.15
COG0514	590	RecQ Superfamily II DNA helicase [DNA replication,	99.14
TIGR01587	358	cas3_core CRISPR-associated helicase Cas3. This mo	99.1
PRK11664	812	ATP-dependent RNA helicase HrpB; Provisional	99.04
TIGR01970	819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	99.03
cd00268	203	DEADc DEAD-box helicases. A diverse family of prot	98.97
TIGR03158	357	cas3_cyano CRISPR-associated helicase, Cyano-type.	98.88
PHA02558	501	uvsW UvsW helicase; Provisional	98.88
PRK10917	681	ATP-dependent DNA helicase RecG; Provisional	98.84
KOG0350|consensus	620		98.81
KOG0351|consensus	941		98.71
PRK09751	1490	putative ATP-dependent helicase Lhr; Provisional	98.7
TIGR00643	630	recG ATP-dependent DNA helicase RecG.	98.7
PRK12898	656	secA preprotein translocase subunit SecA; Reviewed	98.68
PRK11131	1294	ATP-dependent RNA helicase HrpA; Provisional	98.65
KOG0353|consensus	695		98.34
TIGR01967	1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	98.33
COG1205	851	Distinct helicase family with a unique C-terminal	98.28
PRK09200	790	preprotein translocase subunit SecA; Reviewed	97.98
PRK04914	956	ATP-dependent helicase HepA; Validated	97.96
PRK09694	878	helicase Cas3; Provisional	97.95
TIGR03714	762	secA2 accessory Sec system translocase SecA2. Memb	97.95
cd00079	131	HELICc Helicase superfamily c-terminal domain; ass	97.81
PRK13104	896	secA preprotein translocase subunit SecA; Reviewed	97.75
TIGR00963	745	secA preprotein translocase, SecA subunit. The pro	97.63
PRK12904	830	preprotein translocase subunit SecA; Reviewed	97.63
PRK12906	796	secA preprotein translocase subunit SecA; Reviewed	97.5
KOG0352|consensus	641		97.45
PRK13107	908	preprotein translocase subunit SecA; Reviewed	97.39
PRK12900	1025	secA preprotein translocase subunit SecA; Reviewed	97.3
PRK05298	652	excinuclease ABC subunit B; Provisional	97.29
TIGR00631	655	uvrb excinuclease ABC, B subunit. This family is b	97.26
COG1203	733	CRISPR-associated helicase Cas3 [Defense mechanism	97.13
PRK13766	773	Hef nuclease; Provisional	96.8
TIGR00595	505	priA primosomal protein N'. All proteins in this f	96.57
PF06862	442	DUF1253: Protein of unknown function (DUF1253); In	96.53
COG1204	766	Superfamily II helicase [General function predicti	96.51
KOG0951|consensus	1674		96.4
PF00270	169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	95.99
PRK05580	679	primosome assembly protein PriA; Validated	95.71
COG1643	845	HrpA HrpA-like helicases [DNA replication, recombi	95.65
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	95.4
KOG0950|consensus	1008		95.12
TIGR00603	732	rad25 DNA repair helicase rad25. All proteins in t	94.69
COG0556	663	UvrB Helicase subunit of the DNA excision repair c	94.44
smart00487	201	DEXDc DEAD-like helicases superfamily.	94.14
KOG0952|consensus	1230		94.13
PF00271	78	Helicase_C: Helicase conserved C-terminal domain;	94.06
KOG0390|consensus	776		93.06
COG1111	542	MPH1 ERCC4-like helicases [DNA replication, recomb	92.98
smart00490	82	HELICc helicase superfamily c-terminal domain.	92.92
KOG0922|consensus	674		92.15
COG1110	1187	Reverse gyrase [DNA replication, recombination, an	92.12
cd01524	90	RHOD_Pyr_redox Member of the Rhodanese Homology Do	91.41
PRK12903	925	secA preprotein translocase subunit SecA; Reviewed	91.15
KOG1002|consensus	791		90.6
COG1197	1139	Mfd Transcription-repair coupling factor (superfam	90.44
COG1061	442	SSL2 DNA or RNA helicases of superfamily II [Trans	89.82
PRK12326	764	preprotein translocase subunit SecA; Reviewed	89.8
KOG4150|consensus	1034		89.52
PRK12899	970	secA preprotein translocase subunit SecA; Reviewed	87.9
COG4098	441	comFA Superfamily II DNA/RNA helicase required for	86.53
PRK12902	939	secA preprotein translocase subunit SecA; Reviewed	84.73
cd01523	100	RHOD_Lact_B Member of the Rhodanese Homology Domai	84.28
TIGR01407	850	dinG_rel DnaQ family exonuclease/DinG family helic	84.21
KOG0948|consensus	1041		83.66
KOG0354|consensus	746		83.23
CHL00122	870	secA preprotein translocase subunit SecA; Validate	83.18
KOG0947|consensus	1248		82.6
COG4581	1041	Superfamily II RNA helicase [DNA replication, reco	82.32

>KOG0339|consensus

Probab=100.00  E-value=1.2e-43  Score=304.97  Aligned_cols=221  Identities=58%  Similarity=0.899  Sum_probs=214.5

Q ss_pred             CCCCCCCCCCCCcccccccccCCCChhhhcCCHHHHHHHHHHcCCEEecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCC
Q psy17636          2 IDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSP   81 (222)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~p   81 (222)
                      |+++.+|||++|+|+||+|+||.++++++.++..+...++..+++.|.|.++|.|+.+|+++|+++.|+.++.+.-|++|
T Consensus       167 idpl~~idhs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kp  246 (731)
T KOG0339|consen  167 IDPLPPIDHSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKP  246 (731)
T ss_pred             CCCCCCcchhhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHhHHHHHhCCCCCC--------------------------------------------------------------
Q psy17636         82 TPIQAQAVPAALSGRDII--------------------------------------------------------------   99 (222)
Q Consensus        82 TpIQ~~~ip~il~g~dvi--------------------------------------------------------------   99 (222)
                      ||||.+++|..+.|+||+                                                              
T Consensus       247 tpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~  326 (731)
T KOG0339|consen  247 TPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLR  326 (731)
T ss_pred             CcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccce
Confidence            999999999999999999                                                              


Q ss_pred             -------------------------------------------------------------HHHHHHHHhhCCCCCeEEE
Q psy17636        100 -------------------------------------------------------------EPQVRSICDHVRPNRQTLL  118 (222)
Q Consensus       100 -------------------------------------------------------------~~~l~~Il~~~~~~~Q~~l  118 (222)
                                                                                   ++++++|..+++++||++|
T Consensus       327 ~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtll  406 (731)
T KOG0339|consen  327 VVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLL  406 (731)
T ss_pred             EEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEE
Confidence                                                                         9999999999999999999


Q ss_pred             EccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-CchHHHHHHHHHhhCCCCeEEEEecccHH--HH-H
Q psy17636        119 FSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ-TQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-V  194 (222)
Q Consensus       119 fSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~  194 (222)
                      ||||++..|+.+|+.+|.+|+.+..+..+..+..|.|.+.+|++ ..|+.+|++.|.+..+.+++||||..+.+  .+ .
T Consensus       407 FsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a  486 (731)
T KOG0339|consen  407 FSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAA  486 (731)
T ss_pred             eeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHH
Confidence            99999999999999999999999999999999999999999988 78999999999998888999999988866  89 9


Q ss_pred             HhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        195 NLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       195 ~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .|+-+|+++..+||+|.|.+|-+.|+.|
T Consensus       487 ~Lklk~~~v~llhgdkdqa~rn~~ls~f  514 (731)
T KOG0339|consen  487 NLKLKGFNVSLLHGDKDQAERNEVLSKF  514 (731)
T ss_pred             HhccccceeeeecCchhhHHHHHHHHHH
Confidence            9999999999999999999999999876

>KOG0336|consensus

Probab=100.00  E-value=5.3e-39  Score=270.75  Aligned_cols=210  Identities=29%  Similarity=0.453  Sum_probs=190.8

Q ss_pred             CcccccccccCCCChhhhcCCHHHHHHHHHHc-CCEEec------CCCCCCCCCcCC-CCCCHHHHHHHHHCCCCCCCHH
Q psy17636         13 IVYEEVEKNFYQPHEDIARLTPQEAQELRAKS-GITVSG------ADPPYPVSSFGH-FGFDEVLMKALRKCEYTSPTPI   84 (222)
Q Consensus        13 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~-~i~v~g------~~~p~~~~~f~~-l~l~~~l~~~l~~~g~~~pTpI   84 (222)
                      .++||+.||||.++.+.+.|++++++.||+++ +|++..      ..+|+|+.+|++ ++..+++++.+++.||.+||||
T Consensus       167 ~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPI  246 (629)
T KOG0336|consen  167 AKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPI  246 (629)
T ss_pred             ccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcc
Confidence            47999999999999999999999999999996 666653      357999999998 6899999999999999999999


Q ss_pred             HHhHHHHHhCCCCCC-----------------------------------------------------------------
Q psy17636         85 QAQAVPAALSGRDII-----------------------------------------------------------------   99 (222)
Q Consensus        85 Q~~~ip~il~g~dvi-----------------------------------------------------------------   99 (222)
                      |.+|||++|+|.|++                                                                 
T Consensus       247 qSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc  326 (629)
T KOG0336|consen  247 QSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVC  326 (629)
T ss_pred             hhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEE
Confidence            999999999999999                                                                 


Q ss_pred             ----------------------------------------------------------HHHHHHHHhhCCCCCeEEEEcc
Q psy17636        100 ----------------------------------------------------------EPQVRSICDHVRPNRQTLLFSA  121 (222)
Q Consensus       100 ----------------------------------------------------------~~~l~~Il~~~~~~~Q~~lfSA  121 (222)
                                                                                +++|++|+-.++++|||+|.||
T Consensus       327 ~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSA  406 (629)
T KOG0336|consen  327 VYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSA  406 (629)
T ss_pred             EecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecc
Confidence                                                                      8999999999999999999999


Q ss_pred             ccchHHHHHHHHhcCCCcEEEeCCCC-CCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccH--HHH-HHhH
Q psy17636        122 TFKKRIEKLARDVLTDPIKIVQGDIG-EANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKC--FEL-VNLI  197 (222)
Q Consensus       122 T~~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~--~~l-~~L~  197 (222)
                      |||+.|+.+|..|+++|+.+.++..+ .+...|+|.++...+.+|+.....++....+..++||||.++.  +.| ..|.
T Consensus       407 TWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~  486 (629)
T KOG0336|consen  407 TWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFC  486 (629)
T ss_pred             cCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhh
Confidence            99999999999999999999999887 4567899999777778999877666666666689999999884  489 9999


Q ss_pred             HCCceEEEecCCCCCChHHHhhcCC
Q psy17636        198 AKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       198 ~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      -.|+.+.+|||+-+|.+|+.+|.+|
T Consensus       487 l~gi~~q~lHG~r~Q~DrE~al~~~  511 (629)
T KOG0336|consen  487 LKGISSQSLHGNREQSDREMALEDF  511 (629)
T ss_pred             hcccchhhccCChhhhhHHHHHHhh
Confidence            9999999999999999999999876

>KOG0341|consensus

Probab=100.00  E-value=1.8e-39  Score=272.14  Aligned_cols=209  Identities=33%  Similarity=0.497  Sum_probs=199.2

Q ss_pred             CCcccccccccCCCChhhhcCCHHHHHHHHHHcCCEEecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHH
Q psy17636         12 TIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPA   91 (222)
Q Consensus        12 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~   91 (222)
                      .|+|..-.+..|.++.-+..|++++.+..|++++|.|.|.++|+|+.+|.+|.+|..+++.|++.|+.+|||||.+.+|.
T Consensus       124 Gi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPv  203 (610)
T KOG0341|consen  124 GITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPV  203 (610)
T ss_pred             CCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcce
Confidence            37888888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCC------------------------------------------------------------------------
Q psy17636         92 ALSGRDII------------------------------------------------------------------------   99 (222)
Q Consensus        92 il~g~dvi------------------------------------------------------------------------   99 (222)
                      +|+|||+|                                                                        
T Consensus       204 vLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs  283 (610)
T KOG0341|consen  204 VLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRS  283 (610)
T ss_pred             EeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhh
Confidence            99999999                                                                        


Q ss_pred             ------------------------------------------------------------HHHHHHHHhhCCCCCeEEEE
Q psy17636        100 ------------------------------------------------------------EPQVRSICDHVRPNRQTLLF  119 (222)
Q Consensus       100 ------------------------------------------------------------~~~l~~Il~~~~~~~Q~~lf  119 (222)
                                                                                  +++|+.|+.+++..|||+||
T Consensus       284 ~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLF  363 (610)
T KOG0341|consen  284 LLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLF  363 (610)
T ss_pred             hhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeee
Confidence                                                                        89999999999999999999


Q ss_pred             ccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHh
Q psy17636        120 SATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNL  196 (222)
Q Consensus       120 SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L  196 (222)
                      |||||..++.+|+..+-.|+.|+|+..+.++-++.|.+.+|..+.|..+|++.|.+.  ..+++|||..+.+  .+ ++|
T Consensus       364 SATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT--~PpVLIFaEkK~DVD~IhEYL  441 (610)
T KOG0341|consen  364 SATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKT--SPPVLIFAEKKADVDDIHEYL  441 (610)
T ss_pred             eccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccC--CCceEEEeccccChHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999888764  4699999998877  88 999


Q ss_pred             HHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        197 IAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       197 ~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .-+|..++++||+.+|++|..+++.|
T Consensus       442 LlKGVEavaIHGGKDQedR~~ai~af  467 (610)
T KOG0341|consen  442 LLKGVEAVAIHGGKDQEDRHYAIEAF  467 (610)
T ss_pred             HHccceeEEeecCcchhHHHHHHHHH
Confidence            99999999999999999999988754

>PTZ00110 helicase; Provisional

Probab=100.00  E-value=6.3e-37  Score=277.54  Aligned_cols=220  Identities=35%  Similarity=0.549  Sum_probs=202.0

Q ss_pred             CCCCCCCCCCCcccccccccCCCChhhhcCCHHHHHHHHHHcCCEE-ecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCC
Q psy17636          3 DPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITV-SGADPPYPVSSFGHFGFDEVLMKALRKCEYTSP   81 (222)
Q Consensus         3 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~i~v-~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~p   81 (222)
                      +++.++||+..+++||+|+||.++.+++.++.++++.++++++|++ .|.++|+|+.+|+++++++.++++|.++||.+|
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p  153 (545)
T PTZ00110         74 KRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEP  153 (545)
T ss_pred             cccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCC
Confidence            4688999999999999999999999999999999999999999997 699999999999999999999999999999999


Q ss_pred             CHHHHhHHHHHhCCCCCC--------------------------------------------------------------
Q psy17636         82 TPIQAQAVPAALSGRDII--------------------------------------------------------------   99 (222)
Q Consensus        82 TpIQ~~~ip~il~g~dvi--------------------------------------------------------------   99 (222)
                      ||||.+|||.+++|+|+|                                                              
T Consensus       154 t~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~  233 (545)
T PTZ00110        154 TPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIR  233 (545)
T ss_pred             CHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCcc
Confidence            999999999999999999                                                              


Q ss_pred             -------------------------------------------------------------HHHHHHHHhhCCCCCeEEE
Q psy17636        100 -------------------------------------------------------------EPQVRSICDHVRPNRQTLL  118 (222)
Q Consensus       100 -------------------------------------------------------------~~~l~~Il~~~~~~~Q~~l  118 (222)
                                                                                   .+++..|+..+++++|+++
T Consensus       234 ~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~  313 (545)
T PTZ00110        234 NTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLM  313 (545)
T ss_pred             EEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEE
Confidence                                                                         6778899999999999999


Q ss_pred             EccccchHHHHHHHHhcC-CCcEEEeCCCC-CCCCCeeEEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--HH
Q psy17636        119 FSATFKKRIEKLARDVLT-DPIKIVQGDIG-EANTDITQVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL  193 (222)
Q Consensus       119 fSAT~~~~v~~l~~~~l~-~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l  193 (222)
                      ||||+|.+++.+++.++. +|+.+.++... ....+++|.+..++..+|...|..++.... ...++||||+|+..  .+
T Consensus       314 ~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l  393 (545)
T PTZ00110        314 WSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFL  393 (545)
T ss_pred             EEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHH
Confidence            999999999999999986 68888887655 456789999999998889988888777654 45799999999976  88


Q ss_pred             -HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        194 -VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       194 -~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                       ..|...|+++..+||+|++++|+.+|..|
T Consensus       394 ~~~L~~~g~~~~~ihg~~~~~eR~~il~~F  423 (545)
T PTZ00110        394 TKELRLDGWPALCIHGDKKQEERTWVLNEF  423 (545)
T ss_pred             HHHHHHcCCcEEEEECCCcHHHHHHHHHHH
Confidence             99999999999999999999999998765

>KOG0334|consensus

Probab=100.00  E-value=1.5e-38  Score=292.44  Aligned_cols=219  Identities=39%  Similarity=0.574  Sum_probs=208.4

Q ss_pred             CCCCCCCCCCcccccccccCCCChhhhcCCHHHHHHHHHHcC-CEEecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCC
Q psy17636          4 PLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSG-ITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPT   82 (222)
Q Consensus         4 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~-i~v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pT   82 (222)
                      .+..++||++.|.||+|+||.+.++++.|+.++++.+|.... |+|.|.+||.|+.+|.+.|++..|+..++++||..||
T Consensus       310 ~~~~~~~S~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~  389 (997)
T KOG0334|consen  310 NLIQVDHSKISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPT  389 (997)
T ss_pred             ceeecccccccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCc
Confidence            467899999999999999999999999999999999999975 9999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHhCCCCCC---------------------------------------------------------------
Q psy17636         83 PIQAQAVPAALSGRDII---------------------------------------------------------------   99 (222)
Q Consensus        83 pIQ~~~ip~il~g~dvi---------------------------------------------------------------   99 (222)
                      |||.+|||+|++|+|||                                                               
T Consensus       390 ~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~  469 (997)
T KOG0334|consen  390 PIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRV  469 (997)
T ss_pred             chhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceE
Confidence            99999999999999999                                                               


Q ss_pred             ---------------------------------------------------------------HHHHHHHHhhCCCCCeE
Q psy17636        100 ---------------------------------------------------------------EPQVRSICDHVRPNRQT  116 (222)
Q Consensus       100 ---------------------------------------------------------------~~~l~~Il~~~~~~~Q~  116 (222)
                                                                                     +|++..|++.++++|||
T Consensus       470 v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQt  549 (997)
T KOG0334|consen  470 VCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQT  549 (997)
T ss_pred             EEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhh
Confidence                                                                           88888999999999999


Q ss_pred             EEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcC-CCchHHHHHHHHHhhCCCCeEEEEecccH--HHH
Q psy17636        117 LLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLP-QTQKLTWLTHNLVEFLSTGSLLIFVTKKC--FEL  193 (222)
Q Consensus       117 ~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~-~~~K~~~L~~~l~~~~~~~~~IVF~nt~~--~~l  193 (222)
                      ++||||+|-.++.+|...++.|+.|.++.....++.|.|.+.+|+ ..+|+..|+.+|......+++||||.++.  +.+
T Consensus       550 vlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l  629 (997)
T KOG0334|consen  550 VLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADAL  629 (997)
T ss_pred             hhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHH
Confidence            999999999999999999999999999988899999999999999 69999999999998888899999997664  488


Q ss_pred             -HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        194 -VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       194 -~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                       ..|.+.|+.|.+|||+.+|.+|.+.+++|
T Consensus       630 ~~~L~~ag~~~~slHGgv~q~dR~sti~df  659 (997)
T KOG0334|consen  630 LRDLQKAGYNCDSLHGGVDQHDRSSTIEDF  659 (997)
T ss_pred             HHHHHhcCcchhhhcCCCchHHHHhHHHHH
Confidence             99999999999999999999999998876

>KOG0331|consensus

Probab=100.00  E-value=5.5e-37  Score=269.39  Aligned_cols=216  Identities=40%  Similarity=0.571  Sum_probs=193.0

Q ss_pred             CCCCCC--CcccccccccCCCChhhhcCCHHHHHHHHHHcCCEEecCC-CCCCCCCcCC---------------------
Q psy17636          7 PIDHST--IVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGAD-PPYPVSSFGH---------------------   62 (222)
Q Consensus         7 ~~~~~~--~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~-~p~~~~~f~~---------------------   62 (222)
                      ..+|+.  .+++++.+++|.+..........+....+..+.+++.|.+ +|.|+.+|++                     
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (519)
T KOG0331|consen    8 KKDLSLRSLDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGES   87 (519)
T ss_pred             hhhhhccccccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccC
Confidence            345554  7899999999999999999999999999999999999876 8888766544                     


Q ss_pred             --------CCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-----------------------------------
Q psy17636         63 --------FGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-----------------------------------   99 (222)
Q Consensus        63 --------l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-----------------------------------   99 (222)
                              ++|++.+..+|+..||..|||||+++||++++|+|++                                   
T Consensus        88 ~~~~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~  167 (519)
T KOG0331|consen   88 DSSAAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPI  167 (519)
T ss_pred             CcchhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCe
Confidence                    5566777788889999999999999999999999999                                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       168 vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDE  247 (519)
T KOG0331|consen  168 VLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDE  247 (519)
T ss_pred             EEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEecc
Confidence                                                                                            


Q ss_pred             ---------HHHHHHHHhhC-CCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCC--CCCCCeeEEEEEcCCCchHH
Q psy17636        100 ---------EPQVRSICDHV-RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIG--EANTDITQVVINLPQTQKLT  167 (222)
Q Consensus       100 ---------~~~l~~Il~~~-~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~--~~~~~i~q~~~~~~~~~K~~  167 (222)
                               +++|+.|+..+ ++.+||+|||||||.+|+.+|..|+.+|+.|.++...  .++.+|.|.+..|+...|..
T Consensus       248 ADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~  327 (519)
T KOG0331|consen  248 ADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLR  327 (519)
T ss_pred             HHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHH
Confidence                     99999999999 6778999999999999999999999999999998764  67889999999999989998


Q ss_pred             HHHHHHHhhC--CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        168 WLTHNLVEFL--STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       168 ~L~~~l~~~~--~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .|..+|....  +.+|+||||+|+..  +| ..|+..|+++.+||||++|+||+.+|..|
T Consensus       328 ~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~F  387 (519)
T KOG0331|consen  328 KLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGF  387 (519)
T ss_pred             HHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhc
Confidence            8888887765  44699999999965  99 99999999999999999999999999876

>KOG0333|consensus

Probab=100.00  E-value=4e-36  Score=259.50  Aligned_cols=194  Identities=29%  Similarity=0.418  Sum_probs=182.6

Q ss_pred             hhhcCCHHHHHHHHHHcCCEEecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------
Q psy17636         28 DIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------   99 (222)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~i~v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------   99 (222)
                      .+.+|++.+|+.++..++|.++|..+|.|+.+|++.|+|.++++.+...||..|||||++|||..++.+|+|        
T Consensus       215 ~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsG  294 (673)
T KOG0333|consen  215 VLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSG  294 (673)
T ss_pred             hHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCC
Confidence            467899999999999999999999999999999999999999999999999999999999999999999999        


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       295 ktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gce  374 (673)
T KOG0333|consen  295 KTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCE  374 (673)
T ss_pred             ccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccce
Confidence                                                                                            


Q ss_pred             ---------------------------------------HHHHHHHHhhCCC-------------------------CCe
Q psy17636        100 ---------------------------------------EPQVRSICDHVRP-------------------------NRQ  115 (222)
Q Consensus       100 ---------------------------------------~~~l~~Il~~~~~-------------------------~~Q  115 (222)
                                                             ++++..|+.++|.                         -+|
T Consensus       375 iviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrq  454 (673)
T KOG0333|consen  375 IVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQ  454 (673)
T ss_pred             eeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeE
Confidence                                                   8999999999862                         189


Q ss_pred             EEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH
Q psy17636        116 TLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL  193 (222)
Q Consensus       116 ~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l  193 (222)
                      |+|||||||+.++.+|+.||.+|+++.++..+...+.|+|.++.++..+|...|...|... ...++|||+|++..  .|
T Consensus       455 T~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~l  533 (673)
T KOG0333|consen  455 TVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADAL  533 (673)
T ss_pred             EEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHH
Confidence            9999999999999999999999999999999999999999999999999999998888765 45799999999965  88


Q ss_pred             -HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        194 -VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       194 -~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                       +.|.+.|++|..|||+.+|+||+.+|++|
T Consensus       534 Ak~LeK~g~~~~tlHg~k~qeQRe~aL~~f  563 (673)
T KOG0333|consen  534 AKILEKAGYKVTTLHGGKSQEQRENALADF  563 (673)
T ss_pred             HHHHhhccceEEEeeCCccHHHHHHHHHHH
Confidence             99999999999999999999999999876

>KOG0328|consensus

Probab=100.00  E-value=1.2e-34  Score=234.42  Aligned_cols=168  Identities=23%  Similarity=0.354  Sum_probs=157.0

Q ss_pred             CCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC----------------------------------
Q psy17636         54 PYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII----------------------------------   99 (222)
Q Consensus        54 p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi----------------------------------   99 (222)
                      -.++.+|++|||.+++++++...||++|+.||+.|||+|+.|+|||                                  
T Consensus        23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lils  102 (400)
T KOG0328|consen   23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILS  102 (400)
T ss_pred             cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEec
Confidence            4457899999999999999999999999999999999999999999                                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       103 PTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL  182 (400)
T KOG0328|consen  103 PTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEML  182 (400)
T ss_pred             ChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHH
Confidence                                                                                            


Q ss_pred             ----HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCC-chHHHHHHHHH
Q psy17636        100 ----EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQT-QKLTWLTHNLV  174 (222)
Q Consensus       100 ----~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~-~K~~~L~~~l~  174 (222)
                          .+|+.+|.+++|++.|++++|||+|.++.++...|+.+|+.|-+...+.+.+.|+|+|+.++.+ .|++.|.. |.
T Consensus       183 ~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcd-LY  261 (400)
T KOG0328|consen  183 NKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCD-LY  261 (400)
T ss_pred             HhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHH-Hh
Confidence                7899999999999999999999999999999999999999999999999999999999999885 59999955 66


Q ss_pred             hhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        175 EFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       175 ~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ....-.+++|||||+..  +| +.++..++.+.++||||+|++|++...+|
T Consensus       262 d~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dF  312 (400)
T KOG0328|consen  262 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDF  312 (400)
T ss_pred             hhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHh
Confidence            66666899999999976  99 99999999999999999999999988765

>KOG0330|consensus

Probab=100.00  E-value=9.9e-34  Score=237.36  Aligned_cols=166  Identities=30%  Similarity=0.429  Sum_probs=157.1

Q ss_pred             CCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------------
Q psy17636         56 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------   99 (222)
Q Consensus        56 ~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------   99 (222)
                      ...+|.+||+++.+++++++.||+.||+||.++||.++.|+|||                                    
T Consensus        59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPt  138 (476)
T KOG0330|consen   59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPT  138 (476)
T ss_pred             hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCc
Confidence            35789999999999999999999999999999999999999999                                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       139 RELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd  218 (476)
T KOG0330|consen  139 RELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLD  218 (476)
T ss_pred             HHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhh
Confidence                                                                                            


Q ss_pred             ---HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhh
Q psy17636        100 ---EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEF  176 (222)
Q Consensus       100 ---~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~  176 (222)
                         .+.+..|++.+|.+||++|||||||+.+.++-...+.+|+.|.+.....+.++++|+|.+++..+|..+|+.+|.+.
T Consensus       219 ~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~  298 (476)
T KOG0330|consen  219 MDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNEL  298 (476)
T ss_pred             hhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHHhh
Confidence               88999999999999999999999999999999999999999999988899999999999999999999999988776


Q ss_pred             CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        177 LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       177 ~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .. .++||||||+.+  ++ -.|+..|+.+..|||+|+|..|.-+|..|
T Consensus       299 ~g-~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~F  346 (476)
T KOG0330|consen  299 AG-NSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKF  346 (476)
T ss_pred             cC-CcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHH
Confidence            54 799999999977  88 99999999999999999999999999876

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional

Probab=100.00  E-value=5.3e-32  Score=244.39  Aligned_cols=216  Identities=28%  Similarity=0.346  Sum_probs=190.1

Q ss_pred             CCCCCCCCcc-cccccccCCCChhhhc-CCHHHHHHHHHHcCCEEecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCH
Q psy17636          6 PPIDHSTIVY-EEVEKNFYQPHEDIAR-LTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTP   83 (222)
Q Consensus         6 ~~~~~~~~~~-~~~~k~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTp   83 (222)
                      .+++++...+ ++++++||.+..+... ++.++++.+|+.++|.+.|.++|.|+.+|++++|++.++++|.+.||..|||
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptp  146 (518)
T PLN00206         67 VAVGAPKPKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTP  146 (518)
T ss_pred             CCcCCCchhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCH
Confidence            3566777654 8899999998887654 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHhCCCCCC----------------------------------------------------------------
Q psy17636         84 IQAQAVPAALSGRDII----------------------------------------------------------------   99 (222)
Q Consensus        84 IQ~~~ip~il~g~dvi----------------------------------------------------------------   99 (222)
                      ||.+|||.+++|+|++                                                                
T Consensus       147 iQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~  226 (518)
T PLN00206        147 IQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFK  226 (518)
T ss_pred             HHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCce
Confidence            9999999999999998                                                                


Q ss_pred             -------------------------------------------------------------HHHHHHHHhhCCCCCeEEE
Q psy17636        100 -------------------------------------------------------------EPQVRSICDHVRPNRQTLL  118 (222)
Q Consensus       100 -------------------------------------------------------------~~~l~~Il~~~~~~~Q~~l  118 (222)
                                                                                   .+++..|+..++ ++|+++
T Consensus       227 ~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~  305 (518)
T PLN00206        227 TALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLL  305 (518)
T ss_pred             EEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEE
Confidence                                                                         556777777764 689999


Q ss_pred             EccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCC-CCeEEEEecccHH--HH-H
Q psy17636        119 FSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLS-TGSLLIFVTKKCF--EL-V  194 (222)
Q Consensus       119 fSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~-~~~~IVF~nt~~~--~l-~  194 (222)
                      ||||++..++.++..++.++..+.++.....+..++|.++.++..+|...|...+..... .+++||||||+..  .+ .
T Consensus       306 ~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~  385 (518)
T PLN00206        306 FSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLAN  385 (518)
T ss_pred             EEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHH
Confidence            999999999999999999999999988877788899999999988888888777765432 3589999999976  67 7


Q ss_pred             HhHH-CCceEEEecCCCCCChHHHhhcCC
Q psy17636        195 NLIA-KNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       195 ~L~~-~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .|.. .|+++..+||+|++++|..++..|
T Consensus       386 ~L~~~~g~~~~~~Hg~~~~~eR~~il~~F  414 (518)
T PLN00206        386 AITVVTGLKALSIHGEKSMKERREVMKSF  414 (518)
T ss_pred             HHhhccCcceEEeeCCCCHHHHHHHHHHH
Confidence            7864 699999999999999999998765

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=3.8e-31  Score=238.07  Aligned_cols=164  Identities=31%  Similarity=0.475  Sum_probs=152.1

Q ss_pred             CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636         58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------------------------------------   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------------------------------------   99 (222)
                      .+|+++++++.++++|.++||..|||||.++||.++.|+|++                                      
T Consensus        29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT  108 (513)
T COG0513          29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT  108 (513)
T ss_pred             CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence            789999999999999999999999999999999999999999                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd  188 (513)
T COG0513         109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLD  188 (513)
T ss_pred             HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhc
Confidence                                                                                            


Q ss_pred             ---HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCC--CCCCeeEEEEEcCCCc-hHHHHHHHH
Q psy17636        100 ---EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGE--ANTDITQVVINLPQTQ-KLTWLTHNL  173 (222)
Q Consensus       100 ---~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~--~~~~i~q~~~~~~~~~-K~~~L~~~l  173 (222)
                         .+++..|++.+|.++|+++||||+|+.+..+++.++.+|..|.+.....  +..+|.|+++.|++.+ |...|..++
T Consensus       189 ~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll  268 (513)
T COG0513         189 MGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLL  268 (513)
T ss_pred             CCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHH
Confidence               8999999999999999999999999999999999999999999986554  8899999999999865 999887766


Q ss_pred             HhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        174 VEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       174 ~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ... ...++||||+|+..  .+ ..|...|+++..|||+|+|++|.++|..|
T Consensus       269 ~~~-~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F  319 (513)
T COG0513         269 KDE-DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKF  319 (513)
T ss_pred             hcC-CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHH
Confidence            543 45689999999976  88 99999999999999999999999999876

>KOG0338|consensus

Probab=99.97  E-value=2e-31  Score=229.86  Aligned_cols=164  Identities=27%  Similarity=0.360  Sum_probs=149.9

Q ss_pred             CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636         58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------------------------------------   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------------------------------------   99 (222)
                      .+|.+|+|+.+|++++..+||..|||||.++||..|-|+|++                                      
T Consensus       181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~P  260 (691)
T KOG0338|consen  181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVP  260 (691)
T ss_pred             hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEec
Confidence            589999999999999999999999999999999999999999                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       261 TRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRML  340 (691)
T KOG0338|consen  261 TRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRML  340 (691)
T ss_pred             cHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHH
Confidence                                                                                            


Q ss_pred             ----HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC---CchHHHHHHH
Q psy17636        100 ----EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ---TQKLTWLTHN  172 (222)
Q Consensus       100 ----~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~---~~K~~~L~~~  172 (222)
                          .++++.|++.||++|||+||||||+++|..|+...+++|+.|.+.+...+...+.|.|+.+..   .++...|..+
T Consensus       341 eegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l  420 (691)
T KOG0338|consen  341 EEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASL  420 (691)
T ss_pred             HHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHH
Confidence                899999999999999999999999999999999999999999999988899999999998753   5677777665


Q ss_pred             HHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        173 LVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       173 l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      +.... ...+|||+.|++.  .+ -.|--.|+++..|||+|+|+||..+|.+|
T Consensus       421 ~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kF  472 (691)
T KOG0338|consen  421 ITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKF  472 (691)
T ss_pred             HHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHH
Confidence            55544 6799999999976  77 77777899999999999999999999887

>KOG0340|consensus

Probab=99.96  E-value=1e-29  Score=211.12  Aligned_cols=166  Identities=27%  Similarity=0.328  Sum_probs=148.2

Q ss_pred             CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-------------------------------------
Q psy17636         57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------------------   99 (222)
Q Consensus        57 ~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------------------   99 (222)
                      ...|++|||++++.+.|+.+|+.+|||||..|||.||+|+|+|                                     
T Consensus         6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTr   85 (442)
T KOG0340|consen    6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTR   85 (442)
T ss_pred             cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchH
Confidence            4679999999999999999999999999999999999999999                                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        86 ELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrv  165 (442)
T KOG0340|consen   86 ELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRV  165 (442)
T ss_pred             HHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhh
Confidence                                                                                            


Q ss_pred             -----HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCC--CcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHH
Q psy17636        100 -----EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTD--PIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHN  172 (222)
Q Consensus       100 -----~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~--p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~  172 (222)
                           .+++..|.+.+|..||+++||||+++.+.++.......  +..+.+.+...+.+.+.|.|+.|+...|..+|+..
T Consensus       166 L~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~  245 (442)
T KOG0340|consen  166 LAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHL  245 (442)
T ss_pred             hccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHH
Confidence                 77888889999999999999999999998887655554  45555555668889999999999999999999998


Q ss_pred             HHhhCC--CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        173 LVEFLS--TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       173 l~~~~~--~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      |....+  .+.++||+||+.+  .| ..|+..++.+++|||.|+|++|..+|+.|
T Consensus       246 Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrF  300 (442)
T KOG0340|consen  246 LRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRF  300 (442)
T ss_pred             HhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHH
Confidence            876654  5799999998866  66 89999999999999999999999999876

>KOG0327|consensus

Probab=99.96  E-value=7.3e-29  Score=207.96  Aligned_cols=164  Identities=21%  Similarity=0.328  Sum_probs=153.8

Q ss_pred             CCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------------
Q psy17636         56 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------   99 (222)
Q Consensus        56 ~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------   99 (222)
                      .+.+|++|+|++.|++.+...||++|+.||+.||+++..|.|++                                    
T Consensus        24 vvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPt  103 (397)
T KOG0327|consen   24 VVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPT  103 (397)
T ss_pred             HhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcch
Confidence            35789999999999999999999999999999999999999998                                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       104 reLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs  183 (397)
T KOG0327|consen  104 RELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLS  183 (397)
T ss_pred             HHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhc
Confidence                                                                                            


Q ss_pred             ---HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhh
Q psy17636        100 ---EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEF  176 (222)
Q Consensus       100 ---~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~  176 (222)
                         .++|..|++.+|++.|+++||||+|.++..+++.|+.+|+.|.+...+.+.+.++|+|+.+...+|+..|..+..  
T Consensus       184 ~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~--  261 (397)
T KOG0327|consen  184 RGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR--  261 (397)
T ss_pred             cchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH--
Confidence               899999999999999999999999999999999999999999999999999999999999999889999966444  


Q ss_pred             CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        177 LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       177 ~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                       .-.+.+|||||+..  ++ ..|...|+.+.++||+|.|.+|+..+.+|
T Consensus       262 -~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef  309 (397)
T KOG0327|consen  262 -RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREF  309 (397)
T ss_pred             -hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHh
Confidence             35799999999976  89 99999999999999999999999988765

>KOG0343|consensus

Probab=99.96  E-value=1.2e-28  Score=214.48  Aligned_cols=185  Identities=23%  Similarity=0.341  Sum_probs=161.0

Q ss_pred             cCCHHHHHHHHHHc-CCEEecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC----------
Q psy17636         31 RLTPQEAQELRAKS-GITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII----------   99 (222)
Q Consensus        31 ~~~~~~~~~~~~~~-~i~v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi----------   99 (222)
                      ...+++++++...+ ++.+      ..++.|.+|+|+....++|++.+|..||.||+.+||..|.|+||+          
T Consensus        47 ~~Eee~i~~l~~ky~ei~~------~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKT  120 (758)
T KOG0343|consen   47 QQEEEEIEELKQKYAEIDS------TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKT  120 (758)
T ss_pred             hhhHHHHHHHHHHHHHhhh------hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCce
Confidence            34455666666654 3322      125689999999999999999999999999999999999999999          


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       121 LAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGR  200 (758)
T KOG0343|consen  121 LAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGR  200 (758)
T ss_pred             eeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHH
Confidence                                                                                            


Q ss_pred             --------------------------------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCC-
Q psy17636        100 --------------------------------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDI-  146 (222)
Q Consensus       100 --------------------------------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~-  146 (222)
                                                      ...++.|++.+|+.|||+|||||-+..|..+|+..+.||.+|.+... 
T Consensus       201 LLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a  280 (758)
T KOG0343|consen  201 LLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENA  280 (758)
T ss_pred             HHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccc
Confidence                                            78999999999999999999999999999999999999999988743 


Q ss_pred             -CCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHC--CceEEEecCCCCCChHHHhhc
Q psy17636        147 -GEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAK--NYWLIQAVGILMCPKSPSRLS  220 (222)
Q Consensus       147 -~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~--g~~~~~lHg~~~q~~R~~~L~  220 (222)
                       ..++.++.|+|+.|+-.+|.++|..++.... ..++|||++|+++  .+ ..+...  |++..+|||.|+|.+|...+.
T Consensus       281 ~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~  359 (758)
T KOG0343|consen  281 VAATPSNLQQSYVIVPLEDKIDMLWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYK  359 (758)
T ss_pred             cccChhhhhheEEEEehhhHHHHHHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHH
Confidence             4788999999999999999999999887765 4699999999987  56 666554  999999999999999999887


Q ss_pred             CC
Q psy17636        221 LV  222 (222)
Q Consensus       221 ~~  222 (222)
                      .|
T Consensus       360 ~F  361 (758)
T KOG0343|consen  360 KF  361 (758)
T ss_pred             HH
Confidence            65

>KOG0326|consensus

Probab=99.95  E-value=1.4e-28  Score=202.30  Aligned_cols=163  Identities=22%  Similarity=0.334  Sum_probs=148.2

Q ss_pred             CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636         58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------------------------------------   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------------------------------------   99 (222)
                      ..|++++|..+++..+.++||+.|+|||+++||.+|.|+|++                                      
T Consensus        85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtre  164 (459)
T KOG0326|consen   85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRE  164 (459)
T ss_pred             ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecch
Confidence            359999999999999999999999999999999999999999                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       165 lALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F  244 (459)
T KOG0326|consen  165 LALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDF  244 (459)
T ss_pred             hhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhh
Confidence                                                                                            


Q ss_pred             HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCC
Q psy17636        100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLST  179 (222)
Q Consensus       100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~  179 (222)
                      .+-+..++..+|+.+|.+|||||+|-.|..+..++|++|..|.+-. +.+...|.|+|-+|.+++|...|-.++.+. .-
T Consensus       245 ~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~-eLtl~GvtQyYafV~e~qKvhCLntLfskL-qI  322 (459)
T KOG0326|consen  245 QPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLME-ELTLKGVTQYYAFVEERQKVHCLNTLFSKL-QI  322 (459)
T ss_pred             hhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhh-hhhhcchhhheeeechhhhhhhHHHHHHHh-cc
Confidence            7788999999999999999999999999999999999999998754 367889999999999999999986655554 35


Q ss_pred             CeEEEEecccHH-H-H-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        180 GSLLIFVTKKCF-E-L-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       180 ~~~IVF~nt~~~-~-l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .+.|||||+..+ + + ....+.|++|..+|+.|-|+.|-..+.+|
T Consensus       323 NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdF  368 (459)
T KOG0326|consen  323 NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDF  368 (459)
T ss_pred             cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhh
Confidence            699999999877 4 4 88999999999999999999999988776

>KOG0335|consensus

Probab=99.95  E-value=5.8e-28  Score=209.68  Aligned_cols=177  Identities=35%  Similarity=0.481  Sum_probs=163.4

Q ss_pred             CEEecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------
Q psy17636         46 ITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------------------------   99 (222)
Q Consensus        46 i~v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------------------------   99 (222)
                      +++.|.++|.++.+|.+-.+++.+..+++..||+.|||||+.+||.+..|+|++                          
T Consensus        62 v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~  141 (482)
T KOG0335|consen   62 VKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGP  141 (482)
T ss_pred             eeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCc
Confidence            456899999999999999999999999999999999999999999999999999                          


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       142 ~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~  221 (482)
T KOG0335|consen  142 EDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK  221 (482)
T ss_pred             ccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce
Confidence                                                                                            


Q ss_pred             -----------------------HHHHHHHHhhCCC----CCeEEEEccccchHHHHHHHHhcCC-CcEEEeCCCCCCCC
Q psy17636        100 -----------------------EPQVRSICDHVRP----NRQTLLFSATFKKRIEKLARDVLTD-PIKIVQGDIGEANT  151 (222)
Q Consensus       100 -----------------------~~~l~~Il~~~~~----~~Q~~lfSAT~~~~v~~l~~~~l~~-p~~i~v~~~~~~~~  151 (222)
                                             +++|++|+..+..    .+|++|||||+|..++.++..++.+ .+.+.++..+..++
T Consensus       222 i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~  301 (482)
T KOG0335|consen  222 ISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSE  301 (482)
T ss_pred             eehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccc
Confidence                                   7899999988743    7999999999999999999999985 99999999999999


Q ss_pred             CeeEEEEEcCCCchHHHHHHHHHhhC---CCC-----eEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhc
Q psy17636        152 DITQVVINLPQTQKLTWLTHNLVEFL---STG-----SLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLS  220 (222)
Q Consensus       152 ~i~q~~~~~~~~~K~~~L~~~l~~~~---~~~-----~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~  220 (222)
                      ++.|.+.+|.+.+|...|+.+|....   ..+     +++|||.|+..  .+ ..|...|+++.++||+.+|.+|+.+|+
T Consensus       302 ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~  381 (482)
T KOG0335|consen  302 NITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALN  381 (482)
T ss_pred             cceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHH
Confidence            99999999999999999999887554   233     89999999865  99 999999999999999999999999999


Q ss_pred             CC
Q psy17636        221 LV  222 (222)
Q Consensus       221 ~~  222 (222)
                      +|
T Consensus       382 ~F  383 (482)
T KOG0335|consen  382 DF  383 (482)
T ss_pred             Hh
Confidence            87

>KOG0346|consensus

Probab=99.95  E-value=1.6e-27  Score=202.73  Aligned_cols=165  Identities=25%  Similarity=0.318  Sum_probs=153.4

Q ss_pred             CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636         58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------------------------------------   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------------------------------------   99 (222)
                      .+|++|||++.|++++.+.||..||-||+.|||.+|+|+|++                                      
T Consensus        19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i   98 (569)
T KOG0346|consen   19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI   98 (569)
T ss_pred             ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence            589999999999999999999999999999999999999999                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE  178 (569)
T KOG0346|consen   99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE  178 (569)
T ss_pred             EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence                                                                                            


Q ss_pred             ---------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCC-CCCCCeeEEEEEcCCCchHHHH
Q psy17636        100 ---------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIG-EANTDITQVVINLPQTQKLTWL  169 (222)
Q Consensus       100 ---------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L  169 (222)
                               +++++.|.+++|+..|.+|+|||++++|+.+-+.+++||+.+.+...+ ..++++.|+++.|.+.+|+..|
T Consensus       179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll  258 (569)
T KOG0346|consen  179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL  258 (569)
T ss_pred             hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence                     899999999999999999999999999999999999999999888776 4468899999999999999988


Q ss_pred             HHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        170 THNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       170 ~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      +.+|+-..-.+++|||+||...  .| -+|...|++++.|.|+|++..|.+.++-|
T Consensus       259 yallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QF  314 (569)
T KOG0346|consen  259 YALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQF  314 (569)
T ss_pred             HHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHh
Confidence            7777655557899999999877  88 99999999999999999999999998755

>KOG0332|consensus

Probab=99.94  E-value=4.4e-27  Score=196.65  Aligned_cols=166  Identities=24%  Similarity=0.313  Sum_probs=151.5

Q ss_pred             CCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCC--CCCC----------------------------------
Q psy17636         56 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDII----------------------------------   99 (222)
Q Consensus        56 ~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g--~dvi----------------------------------   99 (222)
                      .+.+|++|+|.|+++++|..|||..|+.||+.|+|.+|..  +++|                                  
T Consensus        88 S~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLa  167 (477)
T KOG0332|consen   88 SAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLA  167 (477)
T ss_pred             ccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeC
Confidence            3678999999999999999999999999999999999976  6787                                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       168 PtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~t  247 (477)
T KOG0332|consen  168 PTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDT  247 (477)
T ss_pred             chHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhc
Confidence                                                                                            


Q ss_pred             ---HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-CchHHHHHHHHHh
Q psy17636        100 ---EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ-TQKLTWLTHNLVE  175 (222)
Q Consensus       100 ---~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~  175 (222)
                         .++-..|...+|++.|.++||||+.+.+..+|....+|+..+.+........+|+|+|+.|+. .+|+..|.+ |..
T Consensus       248 qG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~-lyg  326 (477)
T KOG0332|consen  248 QGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVN-LYG  326 (477)
T ss_pred             ccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHH-HHh
Confidence               567778888889999999999999999999999999999999998888999999999999987 789999876 666


Q ss_pred             hCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        176 FLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       176 ~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ...-+++||||.|++.  ++ ..|...|+.+..|||+|.-+||......|
T Consensus       327 ~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~F  376 (477)
T KOG0332|consen  327 LLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRF  376 (477)
T ss_pred             hhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHH
Confidence            6666899999999977  89 99999999999999999999999887654

>KOG0342|consensus

Probab=99.94  E-value=1.5e-26  Score=199.14  Aligned_cols=166  Identities=24%  Similarity=0.334  Sum_probs=151.7

Q ss_pred             CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-------------------------------------
Q psy17636         57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------------------   99 (222)
Q Consensus        57 ~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------------------   99 (222)
                      ...|+++.|++....+++++||..+|+||+++||+++.|+|++                                     
T Consensus        81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi  160 (543)
T KOG0342|consen   81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII  160 (543)
T ss_pred             hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence            3568899999999999999999999999999999999999999                                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD  240 (543)
T KOG0342|consen  161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD  240 (543)
T ss_pred             cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence                                                                                            


Q ss_pred             -------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcC-CCcEEEeCCCC--CCCCCeeEEEEEcCCCchHHHH
Q psy17636        100 -------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLT-DPIKIVQGDIG--EANTDITQVVINLPQTQKLTWL  169 (222)
Q Consensus       100 -------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~-~p~~i~v~~~~--~~~~~i~q~~~~~~~~~K~~~L  169 (222)
                             .+++..|+..+|+.||+++||||+|.+|+++++..++ +|++|++...+  .+.+.+.|.|++++...++..|
T Consensus       241 rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll  320 (543)
T KOG0342|consen  241 RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLL  320 (543)
T ss_pred             hhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHH
Confidence                   8999999999999999999999999999999999987 69999887665  6788999999999998888889


Q ss_pred             HHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        170 THNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       170 ~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      +.+|++..+..++||||.|+..  .+ ..|....++|..|||+++|..|-+....|
T Consensus       321 ~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F  376 (543)
T KOG0342|consen  321 YTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEF  376 (543)
T ss_pred             HHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHH
Confidence            9999888776899999999966  66 88888999999999999999998876544

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional

Probab=99.94  E-value=7.3e-26  Score=207.83  Aligned_cols=165  Identities=25%  Similarity=0.362  Sum_probs=150.2

Q ss_pred             CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-------------------------------------
Q psy17636         57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------------------   99 (222)
Q Consensus        57 ~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------------------   99 (222)
                      .++|.+|+|++.++++|.++||.+|||+|.++||.+++|+|+|                                     
T Consensus         5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr   84 (629)
T PRK11634          5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR   84 (629)
T ss_pred             cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence            4579999999999999999999999999999999999999998                                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~  164 (629)
T PRK11634         85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRM  164 (629)
T ss_pred             HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhc
Confidence                                                                                            


Q ss_pred             --HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC
Q psy17636        100 --EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL  177 (222)
Q Consensus       100 --~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~  177 (222)
                        .+++..|+..+|..+|+++||||+|..+..+++.++.+|..|.+.........+.|.++.+...+|...|..+|... 
T Consensus       165 gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~-  243 (629)
T PRK11634        165 GFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAE-  243 (629)
T ss_pred             ccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhc-
Confidence              56788899999999999999999999999999999999999988877777788999999999888999888776543 


Q ss_pred             CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        178 STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ...++||||+|+..  .+ ..|...|+.+..+||+|+|.+|+..+..|
T Consensus       244 ~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~F  291 (629)
T PRK11634        244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERL  291 (629)
T ss_pred             CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHH
Confidence            45799999999976  88 99999999999999999999999988754

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional

Probab=99.94  E-value=9.3e-26  Score=201.37  Aligned_cols=164  Identities=27%  Similarity=0.383  Sum_probs=147.9

Q ss_pred             CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-------------------------------------
Q psy17636         57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------------------   99 (222)
Q Consensus        57 ~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------------------   99 (222)
                      ..+|++++|++.++++|.++||..|||||++|||.+++|+|++                                     
T Consensus         3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptr   82 (460)
T PRK11776          3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR   82 (460)
T ss_pred             CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCH
Confidence            3689999999999999999999999999999999999999998                                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~  162 (460)
T PRK11776         83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDM  162 (460)
T ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCc
Confidence                                                                                            


Q ss_pred             --HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC
Q psy17636        100 --EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL  177 (222)
Q Consensus       100 --~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~  177 (222)
                        ..++..++..+|..+|+++||||+|+.+..++..++.+|..+.+.... ....+.|+++.++..+|...|..++.. .
T Consensus       163 g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~~-~  240 (460)
T PRK11776        163 GFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQRLLLH-H  240 (460)
T ss_pred             CcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHHHHHHh-c
Confidence              677888999999999999999999999999999999999999886654 456699999999998899988776654 3


Q ss_pred             CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        178 STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ..+++||||||+..  .+ ..|...|+++..+||+|++.+|...+..|
T Consensus       241 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F  288 (460)
T PRK11776        241 QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRF  288 (460)
T ss_pred             CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Confidence            45799999999977  88 99999999999999999999999988765

>KOG0345|consensus

Probab=99.93  E-value=6.4e-26  Score=194.34  Aligned_cols=164  Identities=23%  Similarity=0.327  Sum_probs=147.3

Q ss_pred             CCcCCCC--CCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------------
Q psy17636         58 SSFGHFG--FDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------   99 (222)
Q Consensus        58 ~~f~~l~--l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------   99 (222)
                      .+|++++  |+++|++++..+||..+||+|..|||.+++++||+                                    
T Consensus         4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal   83 (567)
T KOG0345|consen    4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL   83 (567)
T ss_pred             cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence            4688886  45999999999999999999999999999999999                                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL  163 (567)
T KOG0345|consen   84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL  163 (567)
T ss_pred             EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence                                                                                            


Q ss_pred             -----------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCC--CCCCeeEEEEEcCCCchH
Q psy17636        100 -----------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGE--ANTDITQVVINLPQTQKL  166 (222)
Q Consensus       100 -----------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~--~~~~i~q~~~~~~~~~K~  166 (222)
                                 +.+++.|++.+|++|.|.|||||+.+++.++++..++||+.|.|+..+.  ++..+..+|..|+..+|.
T Consensus       164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~  243 (567)
T KOG0345|consen  164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKL  243 (567)
T ss_pred             cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHH
Confidence                       8999999999999999999999999999999999999999999988875  888899999999999999


Q ss_pred             HHHHHHHHhhCCCCeEEEEecccHH--HH-HHhH--HCCceEEEecCCCCCChHHHhhcCC
Q psy17636        167 TWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLI--AKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       167 ~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~--~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ..|+++|... ..+++|||+.|++.  .. ..|.  ..+.+..++||.|+|.+|.++|..|
T Consensus       244 ~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F  303 (567)
T KOG0345|consen  244 SQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAF  303 (567)
T ss_pred             HHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHH
Confidence            9999988763 46899999999976  22 3333  3478999999999999999998765

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional

Probab=99.93  E-value=4.3e-25  Score=195.15  Aligned_cols=164  Identities=25%  Similarity=0.327  Sum_probs=146.4

Q ss_pred             CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636         58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------------------------------------   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------------------------------------   99 (222)
                      .+|++++|++.++++|.++||..|||||++|||.+++|+|++                                      
T Consensus         8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~l   87 (423)
T PRK04837          8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRAL   87 (423)
T ss_pred             CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence            689999999999999999999999999999999999999998                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        88 il~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad  167 (423)
T PRK04837         88 IMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD  167 (423)
T ss_pred             EECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH
Confidence                                                                                            


Q ss_pred             -------HHHHHHHHhhCCC--CCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHH
Q psy17636        100 -------EPQVRSICDHVRP--NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLT  170 (222)
Q Consensus       100 -------~~~l~~Il~~~~~--~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~  170 (222)
                             ..++..|+..++.  .+|+++||||++..+.+++..++.+|..+.+........++.+.++.+...+|...|.
T Consensus       168 ~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~  247 (423)
T PRK04837        168 RMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQ  247 (423)
T ss_pred             HHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHH
Confidence                   5677788888874  6789999999999999999999999999988877777788999888887788988887


Q ss_pred             HHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        171 HNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       171 ~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .++... ...++||||+++..  .+ ..|...|+++..+||+|++++|...+..|
T Consensus       248 ~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F  301 (423)
T PRK04837        248 TLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEF  301 (423)
T ss_pred             HHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHH
Confidence            766543 45799999999966  88 99999999999999999999999998765

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional

Probab=99.93  E-value=2.8e-25  Score=198.04  Aligned_cols=164  Identities=29%  Similarity=0.389  Sum_probs=146.4

Q ss_pred             CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636         58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------------------------------------   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------------------------------------   99 (222)
                      ++|++|+|++.++++|.++||..|||||.+|||.+++|+|++                                      
T Consensus         1 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi   80 (456)
T PRK10590          1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI   80 (456)
T ss_pred             CCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence            479999999999999999999999999999999999999988                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~  160 (456)
T PRK10590         81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR  160 (456)
T ss_pred             EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH
Confidence                                                                                            


Q ss_pred             ------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHH
Q psy17636        100 ------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNL  173 (222)
Q Consensus       100 ------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l  173 (222)
                            ..++..++..++.++|+++||||++.++..++..++.+|..+.+.........+.|.+..++...|...|..++
T Consensus       161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~  240 (456)
T PRK10590        161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI  240 (456)
T ss_pred             HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHH
Confidence                  46677888889999999999999999999999999999999988777677788999999988888877665544


Q ss_pred             HhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        174 VEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       174 ~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                       ......++|||||++..  .+ ..|...|+++..+||+|++++|..++..|
T Consensus       241 -~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F  291 (456)
T PRK10590        241 -GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADF  291 (456)
T ss_pred             -HcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH
Confidence             33445799999999976  88 99999999999999999999999998765

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional

Probab=99.93  E-value=4.5e-25  Score=201.11  Aligned_cols=165  Identities=28%  Similarity=0.359  Sum_probs=146.9

Q ss_pred             CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-------------------------------------
Q psy17636         57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------------------   99 (222)
Q Consensus        57 ~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------------------   99 (222)
                      .++|++|+|++.|+++|.++||..|||||++|||.+++|+|++                                     
T Consensus         8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra   87 (572)
T PRK04537          8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA   87 (572)
T ss_pred             CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence            3579999999999999999999999999999999999999998                                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE  167 (572)
T PRK04537         88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE  167 (572)
T ss_pred             EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence                                                                                            


Q ss_pred             ---------HHHHHHHHhhCCC--CCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHH
Q psy17636        100 ---------EPQVRSICDHVRP--NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTW  168 (222)
Q Consensus       100 ---------~~~l~~Il~~~~~--~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~  168 (222)
                               ..++..|+..++.  ++|+++||||++..+..++..++.+|..+.+........++.|.++.+...+|...
T Consensus       168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~  247 (572)
T PRK04537        168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTL  247 (572)
T ss_pred             HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHH
Confidence                     4567778888876  78999999999999999999999999888777666677889999999888889888


Q ss_pred             HHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        169 LTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       169 L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      |+.++.. ....++||||||+..  .+ ..|...|+++..+||+|++.+|...+..|
T Consensus       248 L~~ll~~-~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~F  303 (572)
T PRK04537        248 LLGLLSR-SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRF  303 (572)
T ss_pred             HHHHHhc-ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHH
Confidence            8776654 345799999999976  88 99999999999999999999999998765

>KOG0337|consensus

Probab=99.92  E-value=3.5e-25  Score=187.71  Aligned_cols=165  Identities=22%  Similarity=0.268  Sum_probs=155.5

Q ss_pred             CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636         58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------------------------------------   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------------------------------------   99 (222)
                      -+|..|||+..+.+++.+.||..|||||+++||.+|+|+|++                                      
T Consensus        21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilsptr  100 (529)
T KOG0337|consen   21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTR  100 (529)
T ss_pred             CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcH
Confidence            579999999999999999999999999999999999999999                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       101 eLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemg  180 (529)
T KOG0337|consen  101 ELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMG  180 (529)
T ss_pred             HHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhh
Confidence                                                                                            


Q ss_pred             -HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCC
Q psy17636        100 -EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLS  178 (222)
Q Consensus       100 -~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~  178 (222)
                       .+++.+++..+|.++||++||||+|..+-.+++.-+.+|+.|.+.-+..+++.++..+..+...+|..+|+.++.....
T Consensus       181 fqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~  260 (529)
T KOG0337|consen  181 FQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIK  260 (529)
T ss_pred             hHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhcccc
Confidence             6999999999999999999999999999999999999999999888889999999999999999999999998888776


Q ss_pred             CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        179 TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       179 ~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ..+++|||.|+..  .+ ..|+..|+.+..+.|+|+|..|.-++.+|
T Consensus       261 ~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F  307 (529)
T KOG0337|consen  261 DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDF  307 (529)
T ss_pred             ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccc
Confidence            7799999999966  67 99999999999999999999999887776

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional

Probab=99.91  E-value=3.8e-23  Score=183.32  Aligned_cols=164  Identities=29%  Similarity=0.404  Sum_probs=143.7

Q ss_pred             CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636         58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------------------------------------   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------------------------------------   99 (222)
                      ++|++++|++.++++|.++||..|||+|.++||.+++|+|++                                      
T Consensus         1 ~~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~   80 (434)
T PRK11192          1 TTFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT   80 (434)
T ss_pred             CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEEC
Confidence            479999999999999999999999999999999999999988                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l  160 (434)
T PRK11192         81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML  160 (434)
T ss_pred             CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence                                                                                            


Q ss_pred             ----HHHHHHHHhhCCCCCeEEEEccccch-HHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-CchHHHHHHHH
Q psy17636        100 ----EPQVRSICDHVRPNRQTLLFSATFKK-RIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ-TQKLTWLTHNL  173 (222)
Q Consensus       100 ----~~~l~~Il~~~~~~~Q~~lfSAT~~~-~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l  173 (222)
                          ...+..|...++..+|+++||||++. .+..++..++.+|+.+.+........++.|.++.++. ..|...|..++
T Consensus       161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~  240 (434)
T PRK11192        161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLL  240 (434)
T ss_pred             CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHH
Confidence                56677777777888999999999985 5889999999999999888777778889999988876 66777776555


Q ss_pred             HhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        174 VEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       174 ~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      . ....+++|||||++..  .+ ..|...|+++..+||+|++.+|..++..|
T Consensus       241 ~-~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f  291 (434)
T PRK11192        241 K-QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRL  291 (434)
T ss_pred             h-cCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHH
Confidence            4 3345799999999976  88 99999999999999999999999988765

>KOG4284|consensus

Probab=99.90  E-value=8.4e-24  Score=187.20  Aligned_cols=166  Identities=22%  Similarity=0.279  Sum_probs=146.9

Q ss_pred             CCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC----------------------------------
Q psy17636         54 PYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII----------------------------------   99 (222)
Q Consensus        54 p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi----------------------------------   99 (222)
                      |.-...|+++.|...++..|++.||..|||||.+|||.++.|-|+|                                  
T Consensus        21 ~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~  100 (980)
T KOG4284|consen   21 SNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVT  100 (980)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEe
Confidence            4445689999999999999999999999999999999999999998                                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       101 PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~  180 (980)
T KOG4284|consen  101 PTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLM  180 (980)
T ss_pred             cchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhh
Confidence                                                                                            


Q ss_pred             -----HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCC--------chH
Q psy17636        100 -----EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQT--------QKL  166 (222)
Q Consensus       100 -----~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~--------~K~  166 (222)
                           .++|..|+..+|..||++.||||.|..+.++..+||++|..|.........-.|+|+++.+++.        .|.
T Consensus       181 ~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlkl  260 (980)
T KOG4284|consen  181 DTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKL  260 (980)
T ss_pred             chhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHH
Confidence                 7899999999999999999999999999999999999999999998888888999999988764        255


Q ss_pred             HHHHHHHHhhCCCCeEEEEecc--cHHHH-HHhHHCCceEEEecCCCCCChHHHhhc
Q psy17636        167 TWLTHNLVEFLSTGSLLIFVTK--KCFEL-VNLIAKNYWLIQAVGILMCPKSPSRLS  220 (222)
Q Consensus       167 ~~L~~~l~~~~~~~~~IVF~nt--~~~~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~  220 (222)
                      ..|-.++ +..+..++||||+.  |++.+ ..|+..|++|.++.|.|+|.+|..+..
T Consensus       261 q~L~~vf-~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~  316 (980)
T KOG4284|consen  261 QKLTHVF-KSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVD  316 (980)
T ss_pred             HHHHHHH-hhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHH
Confidence            5554433 33456799999985  56688 999999999999999999999998865

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional

Probab=99.89  E-value=6.1e-22  Score=177.47  Aligned_cols=165  Identities=28%  Similarity=0.338  Sum_probs=145.9

Q ss_pred             CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-------------------------------------
Q psy17636         57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------------------   99 (222)
Q Consensus        57 ~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------------------   99 (222)
                      ..+|.+++|++.++++|.+.||..|||+|.+|||.+++|+|+|                                     
T Consensus        86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a  165 (475)
T PRK01297         86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA  165 (475)
T ss_pred             CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence            4679999999999999999999999999999999999999998                                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDE  245 (475)
T PRK01297        166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDE  245 (475)
T ss_pred             EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEech
Confidence                                                                                            


Q ss_pred             ---------HHHHHHHHhhCCC--CCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHH
Q psy17636        100 ---------EPQVRSICDHVRP--NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTW  168 (222)
Q Consensus       100 ---------~~~l~~Il~~~~~--~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~  168 (222)
                               .+++..|+..++.  ++|+++||||++.++..++..++.+|..+.+........++.|.+..+...+|...
T Consensus       246 ah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~  325 (475)
T PRK01297        246 ADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKL  325 (475)
T ss_pred             HHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHH
Confidence                     4567788888764  68999999999999999999999999999888777777889999998888888888


Q ss_pred             HHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        169 LTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       169 L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      |..++.. ....++||||+++..  .+ ..|...|+++..+||+|++++|...+..|
T Consensus       326 l~~ll~~-~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~F  381 (475)
T PRK01297        326 LYNLVTQ-NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGF  381 (475)
T ss_pred             HHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHH
Confidence            8766554 345699999999976  77 99999999999999999999999988765

>KOG0347|consensus

Probab=99.89  E-value=2.8e-24  Score=187.26  Aligned_cols=166  Identities=24%  Similarity=0.338  Sum_probs=142.2

Q ss_pred             CCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCC-CCCC----------------------------------
Q psy17636         55 YPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG-RDII----------------------------------   99 (222)
Q Consensus        55 ~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g-~dvi----------------------------------   99 (222)
                      ..+..|.+|+|+.+++++|..+||+.|||||..+||+++.| .|++                                  
T Consensus       178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~  257 (731)
T KOG0347|consen  178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT  257 (731)
T ss_pred             cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence            34567999999999999999999999999999999999999 7999                                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~  337 (731)
T KOG0347|consen  258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN  337 (731)
T ss_pred             HhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence                                                                                            


Q ss_pred             --------------------HHHHHHHHhhCC-----CCCeEEEEccccch---------------------HHHHHHHH
Q psy17636        100 --------------------EPQVRSICDHVR-----PNRQTLLFSATFKK---------------------RIEKLARD  133 (222)
Q Consensus       100 --------------------~~~l~~Il~~~~-----~~~Q~~lfSAT~~~---------------------~v~~l~~~  133 (222)
                                          .+.+..|+..+.     ..+||+.||||++-                     .++.+.+.
T Consensus       338 ~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~  417 (731)
T KOG0347|consen  338 FKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKK  417 (731)
T ss_pred             hhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHH
Confidence                                677888888774     46899999999862                     23333333


Q ss_pred             h--cCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecC
Q psy17636        134 V--LTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVG  208 (222)
Q Consensus       134 ~--l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg  208 (222)
                      .  ..+|..|++.+...+...+....+.|+-.+|.-+|+.+|...  +|++|||||+...  .| -.|...+++...||+
T Consensus       418 ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA  495 (731)
T KOG0347|consen  418 IGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHA  495 (731)
T ss_pred             hCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcCCCCchhhH
Confidence            2  247899999998889999999999999999999987665543  6899999999866  89 999999999999999


Q ss_pred             CCCCChHHHhhcCC
Q psy17636        209 ILMCPKSPSRLSLV  222 (222)
Q Consensus       209 ~~~q~~R~~~L~~~  222 (222)
                      .|.|.+|.++|..|
T Consensus       496 ~M~QKqRLknLEkF  509 (731)
T KOG0347|consen  496 SMIQKQRLKNLEKF  509 (731)
T ss_pred             HHHHHHHHHhHHHH
Confidence            99999999999876

>PTZ00424 helicase 45; Provisional

Probab=99.87  E-value=4.1e-21  Score=168.44  Aligned_cols=165  Identities=20%  Similarity=0.287  Sum_probs=142.0

Q ss_pred             CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-------------------------------------
Q psy17636         57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------------------   99 (222)
Q Consensus        57 ~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------------------   99 (222)
                      ..+|+++++++.++++|.+.||..|||+|.+|||.+++|+|++                                     
T Consensus        27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~  106 (401)
T PTZ00424         27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTR  106 (401)
T ss_pred             cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCH
Confidence            5789999999999999999999999999999999999999988                                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       107 ~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~  186 (401)
T PTZ00424        107 ELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRG  186 (401)
T ss_pred             HHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcc
Confidence                                                                                            


Q ss_pred             -HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-CchHHHHHHHHHhhC
Q psy17636        100 -EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ-TQKLTWLTHNLVEFL  177 (222)
Q Consensus       100 -~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~~~  177 (222)
                       ...+..++..++++.|++++|||+|..+..+...++.+|..+.+........++.++++.++. ..+...+..++. ..
T Consensus       187 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~  265 (401)
T PTZ00424        187 FKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYE-TL  265 (401)
T ss_pred             hHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHH-hc
Confidence             345667778888899999999999999999999999999888777666667788998888876 446666655443 33


Q ss_pred             CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        178 STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ...++||||+|+..  .+ ..|...|+.+..+||+|++.+|...+.+|
T Consensus       266 ~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f  313 (401)
T PTZ00424        266 TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREF  313 (401)
T ss_pred             CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHH
Confidence            45799999999866  78 99999999999999999999999988765

>KOG0344|consensus

Probab=99.87  E-value=2.8e-22  Score=176.06  Aligned_cols=187  Identities=26%  Similarity=0.355  Sum_probs=166.3

Q ss_pred             HHHHHHHHHcCCEEecCCCCCCCCCcCC----CCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-----------
Q psy17636         35 QEAQELRAKSGITVSGADPPYPVSSFGH----FGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-----------   99 (222)
Q Consensus        35 ~~~~~~~~~~~i~v~g~~~p~~~~~f~~----l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-----------   99 (222)
                      +.....|+.+.+.|.|.++|+|+.+|.+    ...++.+++++...||..|||||++|||.++.++|++           
T Consensus       109 ~~~~~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtl  188 (593)
T KOG0344|consen  109 EKLLGIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTL  188 (593)
T ss_pred             cccccchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchh
Confidence            3445677888999999999999999998    4689999999999999999999999999999999999           


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       189 af~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~  268 (593)
T KOG0344|consen  189 AFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILIS  268 (593)
T ss_pred             hhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhc
Confidence                                                                                            


Q ss_pred             --------------------------------------HHHHHHHHhhCC-CCCeEEEEccccchHHHHHHHHhcCCCcE
Q psy17636        100 --------------------------------------EPQVRSICDHVR-PNRQTLLFSATFKKRIEKLARDVLTDPIK  140 (222)
Q Consensus       100 --------------------------------------~~~l~~Il~~~~-~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~  140 (222)
                                                            ..|+.+|++.+. ++..+-+||||++..|++.+...+.+++.
T Consensus       269 TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~  348 (593)
T KOG0344|consen  269 TPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKR  348 (593)
T ss_pred             CHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhcccee
Confidence                                                  567888888874 46677899999999999999999999999


Q ss_pred             EEeCCCCCCCCCeeEEEEEcCC-CchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHh-HHCCceEEEecCCCCCChH
Q psy17636        141 IVQGDIGEANTDITQVVINLPQ-TQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNL-IAKNYWLIQAVGILMCPKS  215 (222)
Q Consensus       141 i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L-~~~g~~~~~lHg~~~q~~R  215 (222)
                      |.++..+..+..|.|..++|-+ ..|...+.+.+.... ..+++||+.+..+  +| ..| ...++++..+||+.+|.+|
T Consensus       349 vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~-~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qr  427 (593)
T KOG0344|consen  349 VIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGF-KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQR  427 (593)
T ss_pred             EEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccC-CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHH
Confidence            9999999899999999999977 789888888777665 4599999998766  88 999 7889999999999999999


Q ss_pred             HHhhcCC
Q psy17636        216 PSRLSLV  222 (222)
Q Consensus       216 ~~~L~~~  222 (222)
                      +..++-|
T Consensus       428 de~~~~F  434 (593)
T KOG0344|consen  428 DETMERF  434 (593)
T ss_pred             HHHHHHH
Confidence            9988754

>KOG0348|consensus

Probab=99.85  E-value=1.6e-21  Score=169.67  Aligned_cols=165  Identities=23%  Similarity=0.337  Sum_probs=135.7

Q ss_pred             CCcCCCCCCHHHHHHHHH-CCCCCCCHHHHhHHHHHhCCCCCC-------------------------------------
Q psy17636         58 SSFGHFGFDEVLMKALRK-CEYTSPTPIQAQAVPAALSGRDII-------------------------------------   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~-~g~~~pTpIQ~~~ip~il~g~dvi-------------------------------------   99 (222)
                      ..|..+||++.+...|.. |+|+.||.||.+|||.+|+|+|++                                     
T Consensus       136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~AL  215 (708)
T KOG0348|consen  136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYAL  215 (708)
T ss_pred             ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEE
Confidence            569999999999999985 699999999999999999999998                                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       216 VivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDE  295 (708)
T KOG0348|consen  216 VIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDE  295 (708)
T ss_pred             EEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecc
Confidence                                                                                            


Q ss_pred             ---------HHHHHHHHhhC-------------CCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCC------------
Q psy17636        100 ---------EPQVRSICDHV-------------RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGD------------  145 (222)
Q Consensus       100 ---------~~~l~~Il~~~-------------~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~------------  145 (222)
                               +.+|..|++.+             |..+|.+|+|||+++.|..++..-++||+.|....            
T Consensus       296 aDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~  375 (708)
T KOG0348|consen  296 ADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAV  375 (708)
T ss_pred             hhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhh
Confidence                     67777777765             23589999999999999999999999999998221            


Q ss_pred             -------------CCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC---CCCeEEEEecccHH-H-----H-HHhHH----
Q psy17636        146 -------------IGEANTDITQVVINLPQTQKLTWLTHNLVEFL---STGSLLIFVTKKCF-E-----L-VNLIA----  198 (222)
Q Consensus       146 -------------~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~---~~~~~IVF~nt~~~-~-----l-~~L~~----  198 (222)
                                   ...+++++.|+|.+|+..-++..|..+|.+..   ...++|||++++.. +     + ..+..    
T Consensus       376 ~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~  455 (708)
T KOG0348|consen  376 QEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEG  455 (708)
T ss_pred             hhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccccc
Confidence                         02456789999999999999998888777654   23589999998854 1     2 22222    


Q ss_pred             --------------CCceEEEecCCCCCChHHHhhcCC
Q psy17636        199 --------------KNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       199 --------------~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                                    .+.++.-|||+|+|++|-..|..|
T Consensus       456 ~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~F  493 (708)
T KOG0348|consen  456 SSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEF  493 (708)
T ss_pred             ccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhh
Confidence                          245789999999999999998766

>KOG0329|consensus

Probab=99.75  E-value=8.2e-19  Score=141.01  Aligned_cols=164  Identities=23%  Similarity=0.348  Sum_probs=133.9

Q ss_pred             EecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC----------------------------
Q psy17636         48 VSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII----------------------------   99 (222)
Q Consensus        48 v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi----------------------------   99 (222)
                      +.|..+......|.++-|.|++++++-++||++|+++|..|||..+-|-||+                            
T Consensus        32 ~kgsyv~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~v  111 (387)
T KOG0329|consen   32 KKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQV  111 (387)
T ss_pred             ccCcEEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeE
Confidence            3444444445679999999999999999999999999999999999999999                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvl  191 (387)
T KOG0329|consen  112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVL  191 (387)
T ss_pred             EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeeh
Confidence                                                                                            


Q ss_pred             ------------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCC-CCCCCeeEEEEEcCCCchH
Q psy17636        100 ------------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIG-EANTDITQVVINLPQTQKL  166 (222)
Q Consensus       100 ------------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~  166 (222)
                                  ..++..|++..|...|+++||||++++++-..++||.+|..|-+.... .+...++|+|+.+.+.+|.
T Consensus       192 DEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKN  271 (387)
T KOG0329|consen  192 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKN  271 (387)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhh
Confidence                        678889999999999999999999999999999999999999887765 4667899999999998888


Q ss_pred             HHHHHHHHhhCCCCeEEEEecccHH-----H-H-HHhHHCCceE----EEecCCCCC
Q psy17636        167 TWLTHNLVEFLSTGSLLIFVTKKCF-----E-L-VNLIAKNYWL----IQAVGILMC  212 (222)
Q Consensus       167 ~~L~~~l~~~~~~~~~IVF~nt~~~-----~-l-~~L~~~g~~~----~~lHg~~~q  212 (222)
                      ..|..+|.. ....+++||+.+...     . + ..|-..|+..    .++.-||+.
T Consensus       272 rkl~dLLd~-LeFNQVvIFvKsv~Rl~f~kr~vat~lfgrgmdiervNi~~NYdmp~  327 (387)
T KOG0329|consen  272 RKLNDLLDV-LEFNQVVIFVKSVQRLSFQKRLVATDLFGRGMDIERVNIVFNYDMPE  327 (387)
T ss_pred             hhhhhhhhh-hhhcceeEeeehhhhhhhhhhhHHhhhhccccCcccceeeeccCCCC
Confidence            888776654 346799999987644     2 3 4555556543    344555554

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase

Probab=99.74  E-value=3.7e-17  Score=153.08  Aligned_cols=159  Identities=15%  Similarity=0.118  Sum_probs=111.7

Q ss_pred             CCcCCC--CCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------------
Q psy17636         58 SSFGHF--GFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------   99 (222)
Q Consensus        58 ~~f~~l--~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------   99 (222)
                      ..|..+  .+++.+.++|.++||++|||+|.+|||.+++|+|++                                    
T Consensus        12 a~~~~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~Ptr   91 (742)
T TIGR03817        12 GRTAPWPAWAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTK   91 (742)
T ss_pred             cccCCCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChH
Confidence            345554  389999999999999999999999999999999998                                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        92 aLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g  171 (742)
T TIGR03817        92 ALAADQLRAVRELTLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG  171 (742)
T ss_pred             HHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence                                                                                            


Q ss_pred             --HHH-------HHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC--------
Q psy17636        100 --EPQ-------VRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ--------  162 (222)
Q Consensus       100 --~~~-------l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~--------  162 (222)
                        ..+       +..+....+.++|+++||||+++..+ ++..++.+|..+ +........ ..+.+++.+.        
T Consensus       172 ~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~-~~~~~~~~p~~~~~~~~~  248 (742)
T TIGR03817       172 VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRG-ARTVALWEPPLTELTGEN  248 (742)
T ss_pred             ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcC-ceEEEEecCCcccccccc
Confidence              122       23333334567899999999998854 677788888654 433332222 2333332221        


Q ss_pred             ---------CchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHC--------CceEEEecCCCCCChHHHhhcCC
Q psy17636        163 ---------TQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAK--------NYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       163 ---------~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~--------g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                               .++...|..++.   ...++||||||+..  .+ ..|+..        +.++..+||+|++++|...+..|
T Consensus       249 ~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f  325 (742)
T TIGR03817       249 GAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERAL  325 (742)
T ss_pred             ccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHH
Confidence                     133444433333   24699999999976  55 666543        67899999999999999987654

A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype

Probab=99.73  E-value=6.9e-17  Score=150.53  Aligned_cols=114  Identities=14%  Similarity=0.148  Sum_probs=88.7

Q ss_pred             HHHHHHHHhhC--CCC---CeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHH
Q psy17636        100 EPQVRSICDHV--RPN---RQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLV  174 (222)
Q Consensus       100 ~~~l~~Il~~~--~~~---~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~  174 (222)
                      .+++..|++.+  ++.   +|+++||||+|.++.+++..++.++..+.+........++.|+ +.++...|...++..+.
T Consensus       187 ~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~-v~v~~e~Kl~~lv~~L~  265 (844)
T TIGR02621       187 QELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKL-VPPSDEKFLSTMVKELN  265 (844)
T ss_pred             HHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEE-EecChHHHHHHHHHHHH
Confidence            68889999864  432   7999999999999999999999888888877666666778875 44555555554443332


Q ss_pred             hh--CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHH
Q psy17636        175 EF--LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSP  216 (222)
Q Consensus       175 ~~--~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~  216 (222)
                      ..  ...+++||||||+..  .+ ..|+..|+  ..|||+|+|.+|.
T Consensus       266 ~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~  310 (844)
T TIGR02621       266 LLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERD  310 (844)
T ss_pred             HHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHh
Confidence            21  234789999999977  88 99999888  9999999999999

This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family

Probab=99.57  E-value=8.8e-14  Score=124.73  Aligned_cols=107  Identities=12%  Similarity=0.004  Sum_probs=76.3

Q ss_pred             CCCeEEEEccccchHHHHHHHHhc--CCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEeccc
Q psy17636        112 PNRQTLLFSATFKKRIEKLARDVL--TDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKK  189 (222)
Q Consensus       112 ~~~Q~~lfSAT~~~~v~~l~~~~l--~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~  189 (222)
                      ++.|++++|||.+..+.......+  .+|..+....   ...++...+... .......|+.++.+..+..++||||+|+
T Consensus       161 ~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~---~r~nl~~~v~~~-~~~~~~~l~~~l~~~~~~~~~IIF~~s~  236 (470)
T TIGR00614       161 PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSF---DRPNLYYEVRRK-TPKILEDLLRFIRKEFKGKSGIIYCPSR  236 (470)
T ss_pred             CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC---CCCCcEEEEEeC-CccHHHHHHHHHHHhcCCCceEEEECcH
Confidence            467899999999998877666654  4666554322   233443222211 1245556667676544455779999999


Q ss_pred             HH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        190 CF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       190 ~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .+  .+ ..|...|+++..+||+|++++|...+..|
T Consensus       237 ~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F  272 (470)
T TIGR00614       237 KKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKF  272 (470)
T ss_pred             HHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHH
Confidence            77  88 99999999999999999999999988754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional

Probab=99.56  E-value=1.1e-13  Score=131.81  Aligned_cols=106  Identities=14%  Similarity=0.042  Sum_probs=75.8

Q ss_pred             CCCeEEEEccccchHHHHHHHHhcC--CCcEEEeCCCCCCCCCeeEEEEEcCCCch-HHHHHHHHHhhCCCCeEEEEecc
Q psy17636        112 PNRQTLLFSATFKKRIEKLARDVLT--DPIKIVQGDIGEANTDITQVVINLPQTQK-LTWLTHNLVEFLSTGSLLIFVTK  188 (222)
Q Consensus       112 ~~~Q~~lfSAT~~~~v~~l~~~~l~--~p~~i~v~~~~~~~~~i~q~~~~~~~~~K-~~~L~~~l~~~~~~~~~IVF~nt  188 (222)
                      ++.|+++||||++..+++.+...+.  ++..+...   ....++  +|.+++...+ ...|..++.......++||||+|
T Consensus       615 p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S---f~RpNL--~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~S  689 (1195)
T PLN03137        615 PNIPVLALTATATASVKEDVVQALGLVNCVVFRQS---FNRPNL--WYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLS  689 (1195)
T ss_pred             CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc---cCccce--EEEEeccchhHHHHHHHHHHhcccCCCceeEeCc
Confidence            4678999999999998886666554  45443321   223344  3344444333 34455655544435689999999


Q ss_pred             cHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        189 KCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       189 ~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      +.+  .+ ..|...|+++..+||+|++++|..++..|
T Consensus       690 Rke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F  726 (1195)
T PLN03137        690 RMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQW  726 (1195)
T ss_pred             hhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHH
Confidence            976  88 99999999999999999999999988765

>PRK09401 reverse gyrase; Reviewed

Probab=99.55  E-value=6e-14  Score=136.46  Aligned_cols=91  Identities=18%  Similarity=0.038  Sum_probs=72.3

Q ss_pred             CCeEEEEccccchH-HHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccH-
Q psy17636        113 NRQTLLFSATFKKR-IEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKC-  190 (222)
Q Consensus       113 ~~Q~~lfSAT~~~~-v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~-  190 (222)
                      ++|+++||||+++. +..   ..+.++..+.++.......+|.|.|+.++  +|...|..++... + .++||||||+. 
T Consensus       268 ~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l-~-~~~LIFv~t~~~  340 (1176)
T PRK09401        268 KGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYLRNIVDSYIVDE--DSVEKLVELVKRL-G-DGGLIFVPSDKG  340 (1176)
T ss_pred             CceEEEEeCCCCccchHH---HHhhccceEEecCcccccCCceEEEEEcc--cHHHHHHHHHHhc-C-CCEEEEEecccC
Confidence            68999999999864 443   34466777888877777889999999877  6777777766543 3 58999999863 


Q ss_pred             ----HHH-HHhHHCCceEEEecCCC
Q psy17636        191 ----FEL-VNLIAKNYWLIQAVGIL  210 (222)
Q Consensus       191 ----~~l-~~L~~~g~~~~~lHg~~  210 (222)
                          +++ ..|+..|+++..+||+|
T Consensus       341 ~~~ae~l~~~L~~~gi~v~~~hg~l  365 (1176)
T PRK09401        341 KEYAEELAEYLEDLGINAELAISGF  365 (1176)
T ss_pred             hHHHHHHHHHHHHCCCcEEEEeCcH
Confidence                288 99999999999999999

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional

Probab=99.55  E-value=1.7e-13  Score=126.37  Aligned_cols=105  Identities=13%  Similarity=0.095  Sum_probs=75.2

Q ss_pred             CCCeEEEEccccchHHHHHHHHh--cCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEeccc
Q psy17636        112 PNRQTLLFSATFKKRIEKLARDV--LTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKK  189 (222)
Q Consensus       112 ~~~Q~~lfSAT~~~~v~~l~~~~--l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~  189 (222)
                      ++.|++++|||.+..+.......  +.+|.... ...  ...++  .+..+....+...|+..+... ..+++||||+|+
T Consensus       173 p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~~~--~r~nl--~~~v~~~~~~~~~l~~~l~~~-~~~~~IIFc~tr  246 (607)
T PRK11057        173 PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSF--DRPNI--RYTLVEKFKPLDQLMRYVQEQ-RGKSGIIYCNSR  246 (607)
T ss_pred             CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-CCC--CCCcc--eeeeeeccchHHHHHHHHHhc-CCCCEEEEECcH
Confidence            36789999999998876644444  34665433 221  22344  233444455556666666543 457999999999


Q ss_pred             HH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        190 CF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       190 ~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .+  .+ ..|...|+++..+||+|++++|..++..|
T Consensus       247 ~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F  282 (607)
T PRK11057        247 AKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAF  282 (607)
T ss_pred             HHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHH
Confidence            77  88 99999999999999999999999988765

>TIGR01389 recQ ATP-dependent DNA helicase RecQ

Probab=99.54  E-value=1.5e-13  Score=126.44  Aligned_cols=113  Identities=13%  Similarity=0.115  Sum_probs=80.3

Q ss_pred             HHHHHhhCCCCCeEEEEccccchHHHHHHHHhcC--CCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCC
Q psy17636        103 VRSICDHVRPNRQTLLFSATFKKRIEKLARDVLT--DPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTG  180 (222)
Q Consensus       103 l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~--~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~  180 (222)
                      +..+...+| +.+++++|||.+..+.......+.  ++..+. ..  ....++  .+..+....+...+..++.... ..
T Consensus       153 l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~--~~r~nl--~~~v~~~~~~~~~l~~~l~~~~-~~  225 (591)
T TIGR01389       153 LGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFI-TS--FDRPNL--RFSVVKKNNKQKFLLDYLKKHR-GQ  225 (591)
T ss_pred             HHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cC--CCCCCc--EEEEEeCCCHHHHHHHHHHhcC-CC
Confidence            333344444 445999999999998876666664  454432 11  222333  3333445667777777776543 57


Q ss_pred             eEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        181 SLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       181 ~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ++||||+|+..  .+ ..|...|+++..+||+|++++|...+..|
T Consensus       226 ~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F  270 (591)
T TIGR01389       226 SGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDF  270 (591)
T ss_pred             CEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHH
Confidence            99999999976  88 99999999999999999999999988754

The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.

>PRK00254 ski2-like helicase; Provisional

Probab=99.51  E-value=9.8e-14  Score=130.30  Aligned_cols=42  Identities=21%  Similarity=0.392  Sum_probs=39.5

Q ss_pred             CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHH-HhCCCCCC
Q psy17636         58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPA-ALSGRDII   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~-il~g~dvi   99 (222)
                      ++|+++++++.+.+.+++.||.+|+|+|.+||+. +++|+|++
T Consensus         1 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvl   43 (720)
T PRK00254          1 MKVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLV   43 (720)
T ss_pred             CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEE
Confidence            4689999999999999999999999999999996 88999988

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]

Probab=99.51  E-value=2.1e-13  Score=120.62  Aligned_cols=155  Identities=17%  Similarity=0.213  Sum_probs=119.9

Q ss_pred             CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHH-HhCCCCCC-------------------------------------
Q psy17636         58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPA-ALSGRDII-------------------------------------   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~-il~g~dvi-------------------------------------   99 (222)
                      ...+++.+|+.+.+.|+..||++.+|+|..|+.. +++|.|++                                     
T Consensus       194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVAL  273 (830)
T COG1202         194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVAL  273 (830)
T ss_pred             ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHh
Confidence            3467899999999999999999999999999988 67999987                                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       274 ANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~de  353 (830)
T COG1202         274 ANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDE  353 (830)
T ss_pred             hcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccch
Confidence                                                                                            


Q ss_pred             --HHHHHHHHh---hCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcC-CCchHHHHHHHH
Q psy17636        100 --EPQVRSICD---HVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLP-QTQKLTWLTHNL  173 (222)
Q Consensus       100 --~~~l~~Il~---~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~-~~~K~~~L~~~l  173 (222)
                        .+.++.++.   ++-++.|.+.+|||+.+. +++|+..--+++..+-     -+-.++.+++++. ..+|++.+..+.
T Consensus       354 ERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~-----RPVplErHlvf~~~e~eK~~ii~~L~  427 (830)
T COG1202         354 ERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDE-----RPVPLERHLVFARNESEKWDIIARLV  427 (830)
T ss_pred             hcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecC-----CCCChhHeeeeecCchHHHHHHHHHH
Confidence              223333333   334689999999999655 6788777556665532     2334666777887 488998776655


Q ss_pred             HhhC-------CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHh
Q psy17636        174 VEFL-------STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSR  218 (222)
Q Consensus       174 ~~~~-------~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~  218 (222)
                      ....       -.++||||+||+..  .+ ..|...|+++..+|++|++.+|-+.
T Consensus       428 k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~v  482 (830)
T COG1202         428 KREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSV  482 (830)
T ss_pred             HHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHH
Confidence            5332       13699999999855  88 9999999999999999999999764

>PRK02362 ski2-like helicase; Provisional

Probab=99.48  E-value=3.5e-13  Score=126.89  Aligned_cols=42  Identities=21%  Similarity=0.296  Sum_probs=39.7

Q ss_pred             CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHH-HhCCCCCC
Q psy17636         58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPA-ALSGRDII   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~-il~g~dvi   99 (222)
                      |.|++++|++.+++++++.||.+|+|+|.+|++. +++|+|++
T Consensus         1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvl   43 (737)
T PRK02362          1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLL   43 (737)
T ss_pred             CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEE
Confidence            5699999999999999999999999999999998 78999988

>PRK10689 transcription-repair coupling factor; Provisional

Probab=99.46  E-value=1.1e-12  Score=127.46  Aligned_cols=112  Identities=13%  Similarity=0.050  Sum_probs=82.8

Q ss_pred             HHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCC-chHHHHHHHHHhhCCCCeEE
Q psy17636        105 SICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQT-QKLTWLTHNLVEFLSTGSLL  183 (222)
Q Consensus       105 ~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~-~K~~~L~~~l~~~~~~~~~I  183 (222)
                      ..+..++.++|+++||||.++.+..++...+.++..|......  ...+++.+...... .|...    +.+....++++
T Consensus       740 e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~i----l~el~r~gqv~  813 (1147)
T PRK10689        740 ERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVREAI----LREILRGGQVY  813 (1147)
T ss_pred             HHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHHHH----HHHHhcCCeEE
Confidence            3455667789999999998888888888888999888764432  23466665544331 22222    22333457999


Q ss_pred             EEecccHH--HH-HHhHHC--CceEEEecCCCCCChHHHhhcCC
Q psy17636        184 IFVTKKCF--EL-VNLIAK--NYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       184 VF~nt~~~--~l-~~L~~~--g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ||||++..  .+ ..|.+.  ++++..+||+|++++|+.++..|
T Consensus       814 vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~F  857 (1147)
T PRK10689        814 YLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDF  857 (1147)
T ss_pred             EEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHH
Confidence            99999866  77 888877  88999999999999999998765

>PRK14701 reverse gyrase; Provisional

Probab=99.44  E-value=2e-12  Score=128.71  Aligned_cols=102  Identities=18%  Similarity=0.132  Sum_probs=77.4

Q ss_pred             CCCCe-EEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEeccc
Q psy17636        111 RPNRQ-TLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKK  189 (222)
Q Consensus       111 ~~~~Q-~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~  189 (222)
                      |+.+| +++||||++..-.  ....++++..+.++.......++.|.|+.++..+| ..|+.++...  ..++||||+|+
T Consensus       266 ~~~~~~ll~~SAT~~~r~~--~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~  340 (1638)
T PRK14701        266 GNKIGCLIVASATGKAKGD--RVKLYRELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPID  340 (1638)
T ss_pred             CCCccEEEEEecCCCchhH--HHHHhhcCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEecc
Confidence            45566 5679999986411  12345788888888887788899999998876656 4566666543  36899999987


Q ss_pred             H-----HHH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        190 C-----FEL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       190 ~-----~~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .     +++ ..|...|+++..+||+     |..++..|
T Consensus       341 ~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F  374 (1638)
T PRK14701        341 EGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLF  374 (1638)
T ss_pred             ccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHH
Confidence            4     388 9999999999999996     88877665

>TIGR00580 mfd transcription-repair coupling factor (mfd)

Probab=99.41  E-value=5.8e-12  Score=120.18  Aligned_cols=115  Identities=14%  Similarity=0.063  Sum_probs=79.5

Q ss_pred             HHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeE
Q psy17636        103 VRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSL  182 (222)
Q Consensus       103 l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~  182 (222)
                      ....+..++.+.|+++||||..+....++...+.++..|...+.+  ...|++++.......-...+   +......+++
T Consensus       589 ~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~~~~i~~~i---~~el~~g~qv  663 (926)
T TIGR00580       589 QKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYDPELVREAI---RRELLRGGQV  663 (926)
T ss_pred             HHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecCHHHHHHHH---HHHHHcCCeE
Confidence            344555566789999999998777666666667788877654432  23466665433221101112   2223345799


Q ss_pred             EEEecccHH--HH-HHhHHC--CceEEEecCCCCCChHHHhhcCC
Q psy17636        183 LIFVTKKCF--EL-VNLIAK--NYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       183 IVF~nt~~~--~l-~~L~~~--g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      +||||++.+  .+ ..|+..  ++++..+||+|++++|+.++..|
T Consensus       664 ~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F  708 (926)
T TIGR00580       664 FYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEF  708 (926)
T ss_pred             EEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHH
Confidence            999999876  77 888874  89999999999999999998765

All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.

>KOG0349|consensus

Probab=99.40  E-value=4.2e-13  Score=115.32  Aligned_cols=123  Identities=15%  Similarity=0.084  Sum_probs=89.1

Q ss_pred             HHHHHHHHhhCCC------CCeEEEEccccch-HHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-C-chHHHHH
Q psy17636        100 EPQVRSICDHVRP------NRQTLLFSATFKK-RIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ-T-QKLTWLT  170 (222)
Q Consensus       100 ~~~l~~Il~~~~~------~~Q~~lfSAT~~~-~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~-~K~~~L~  170 (222)
                      .+-|.++...+|.      +.|.+++|||+.. +|.+++.+.|.=|..|++...+..++.+.|.+..+.. - .-+..|.
T Consensus       381 ~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr  460 (725)
T KOG0349|consen  381 DDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLR  460 (725)
T ss_pred             HHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccceeecCCccCccHHHHh
Confidence            4555666666652      4799999999965 5889999999999999999988889988887765543 1 1111121


Q ss_pred             HHH----------------------------Hh--------hCCCCeEEEEecccHH--HH-HHhHHC---CceEEEecC
Q psy17636        171 HNL----------------------------VE--------FLSTGSLLIFVTKKCF--EL-VNLIAK---NYWLIQAVG  208 (222)
Q Consensus       171 ~~l----------------------------~~--------~~~~~~~IVF~nt~~~--~l-~~L~~~---g~~~~~lHg  208 (222)
                      ..|                            +.        ...-.++||||.|+.+  .| .++...   .++|+++||
T Consensus       461 ~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhg  540 (725)
T KOG0349|consen  461 QFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHG  540 (725)
T ss_pred             hhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEec
Confidence            111                            10        0123589999999855  88 888775   479999999


Q ss_pred             CCCCChHHHhhcCC
Q psy17636        209 ILMCPKSPSRLSLV  222 (222)
Q Consensus       209 ~~~q~~R~~~L~~~  222 (222)
                      |....+|-.+|.-|
T Consensus       541 DrkP~Erk~nle~F  554 (725)
T KOG0349|consen  541 DRKPDERKANLESF  554 (725)
T ss_pred             CCChhHHHHHHHhh
Confidence            99999998888754

>TIGR01054 rgy reverse gyrase

Probab=99.39  E-value=5.3e-12  Score=123.12  Aligned_cols=96  Identities=9%  Similarity=0.040  Sum_probs=71.9

Q ss_pred             CCCCCe--EEEEccc-cchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEe
Q psy17636        110 VRPNRQ--TLLFSAT-FKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFV  186 (222)
Q Consensus       110 ~~~~~Q--~~lfSAT-~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~  186 (222)
                      +++++|  +++|||| +|..+..   .+++++..+.++.......+|.|.|+.+..  +...|.+++...  ..++||||
T Consensus       261 ~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv  333 (1171)
T TIGR01054       261 IPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYV  333 (1171)
T ss_pred             hhhccCcEEEEEeCCCCccccHH---HHcccccceEecCccccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEE
Confidence            455666  5679999 6765543   356777778888777778899999886654  344565655543  35899999


Q ss_pred             ccc---HH--HH-HHhHHCCceEEEecCCCCC
Q psy17636        187 TKK---CF--EL-VNLIAKNYWLIQAVGILMC  212 (222)
Q Consensus       187 nt~---~~--~l-~~L~~~g~~~~~lHg~~~q  212 (222)
                      +|+   ..  ++ ..|...|+++..+||+|++
T Consensus       334 ~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~  365 (1171)
T TIGR01054       334 SIDYGKEKAEEIAEFLENHGVKAVAYHATKPK  365 (1171)
T ss_pred             eccccHHHHHHHHHHHHhCCceEEEEeCCCCH
Confidence            998   33  88 9999999999999999973

Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.

>COG1201 Lhr Lhr-like helicases [General function prediction only]

Probab=99.37  E-value=1e-11  Score=115.82  Aligned_cols=111  Identities=19%  Similarity=0.153  Sum_probs=66.6

Q ss_pred             HHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCC--CcEEEeCCCCCCCCCeeEEEEEcCCC-----chHHHHHHHHHh
Q psy17636        103 VRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTD--PIKIVQGDIGEANTDITQVVINLPQT-----QKLTWLTHNLVE  175 (222)
Q Consensus       103 l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~--p~~i~v~~~~~~~~~i~q~~~~~~~~-----~K~~~L~~~l~~  175 (222)
                      +.++....+ +.|++..|||+.+. .++++-....  +..|....   ...+.+..++.....     .-...++..+.+
T Consensus       174 LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~---~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~  248 (814)
T COG1201         174 LERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVS---AAKKLEIKVISPVEDLIYDEELWAALYERIAE  248 (814)
T ss_pred             HHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcc---cCCcceEEEEecCCccccccchhHHHHHHHHH
Confidence            334333334 89999999999643 4444433332  44442221   223344444333222     112223333333


Q ss_pred             hC-CCCeEEEEecccHH--HH-HHhHHCC-ceEEEecCCCCCChHHHh
Q psy17636        176 FL-STGSLLIFVTKKCF--EL-VNLIAKN-YWLIQAVGILMCPKSPSR  218 (222)
Q Consensus       176 ~~-~~~~~IVF~nt~~~--~l-~~L~~~g-~~~~~lHg~~~q~~R~~~  218 (222)
                      .. ....++||+|||..  .+ ..|+..+ ..+...||++|.++|...
T Consensus       249 ~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~v  296 (814)
T COG1201         249 LVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEV  296 (814)
T ss_pred             HHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHH
Confidence            22 23589999999966  77 8888887 899999999999999764

>PRK01172 ski2-like helicase; Provisional

Probab=99.34  E-value=8.3e-12  Score=116.64  Aligned_cols=41  Identities=15%  Similarity=0.347  Sum_probs=38.6

Q ss_pred             CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC
Q psy17636         58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi   99 (222)
                      +.|++++|++.+.+.+.+.||. ++|+|.+|++.+++|+|++
T Consensus         1 ~~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvl   41 (674)
T PRK01172          1 MKISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVI   41 (674)
T ss_pred             CcHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEE
Confidence            4688999999999999999997 9999999999999999988

>PRK13767 ATP-dependent helicase; Provisional

Probab=99.34  E-value=7.8e-12  Score=119.53  Aligned_cols=44  Identities=14%  Similarity=-0.012  Sum_probs=36.0

Q ss_pred             CCeEEEEecccHH--HH-HHhHH------CCceEEEecCCCCCChHHHhhcCC
Q psy17636        179 TGSLLIFVTKKCF--EL-VNLIA------KNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       179 ~~~~IVF~nt~~~--~l-~~L~~------~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .+++||||||+..  .+ ..|+.      .+..+..+||+|++++|...+..|
T Consensus       284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~f  336 (876)
T PRK13767        284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKL  336 (876)
T ss_pred             CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHH
Confidence            4689999999965  66 77765      357899999999999999887654

>PHA02653 RNA helicase NPH-II; Provisional

Probab=99.15  E-value=4.4e-10  Score=104.16  Aligned_cols=110  Identities=15%  Similarity=0.175  Sum_probs=78.9

Q ss_pred             HHHHHHHHhhCC-CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC----------CchHHH
Q psy17636        100 EPQVRSICDHVR-PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ----------TQKLTW  168 (222)
Q Consensus       100 ~~~l~~Il~~~~-~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~----------~~K~~~  168 (222)
                      .+.+..++..++ ..+|+++||||++++++.+ ..++++|..|.+..  .....|+++|+....          .+|.. 
T Consensus       307 ~DllL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~-  382 (675)
T PHA02653        307 GDIIIAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPISEVYVKNKYNPKNKRAYIEEEKKN-  382 (675)
T ss_pred             hhHHHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCeEEEEeecCcccccchhhhHHHHHH-
Confidence            555556665543 4579999999999999887 57899999988753  345678888875431          12322 


Q ss_pred             HHHHHHhhC--CCCeEEEEecccHH--HH-HHhHHC--CceEEEecCCCCCC
Q psy17636        169 LTHNLVEFL--STGSLLIFVTKKCF--EL-VNLIAK--NYWLIQAVGILMCP  213 (222)
Q Consensus       169 L~~~l~~~~--~~~~~IVF~nt~~~--~l-~~L~~~--g~~~~~lHg~~~q~  213 (222)
                      ++..+....  ..+++||||+++.+  .+ ..|...  |+.+..|||+|+|.
T Consensus       383 ~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~  434 (675)
T PHA02653        383 IVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI  434 (675)
T ss_pred             HHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH
Confidence            234443322  24689999999977  77 888877  79999999999985

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]

Probab=99.14  E-value=4e-10  Score=101.89  Aligned_cols=116  Identities=15%  Similarity=0.061  Sum_probs=79.4

Q ss_pred             HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcC--CCcEEEeCCCCCCCCCeeEEEEEcCC-CchHHHHHHHHHhh
Q psy17636        100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLT--DPIKIVQGDIGEANTDITQVVINLPQ-TQKLTWLTHNLVEF  176 (222)
Q Consensus       100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~--~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~~  176 (222)
                      ...+..+...+| +..++.++||.++.++.-+...+.  ++..+..+   ...+||.-.++...+ .++...+.. + ..
T Consensus       154 Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s---fdRpNi~~~v~~~~~~~~q~~fi~~-~-~~  227 (590)
T COG0514         154 YRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGS---FDRPNLALKVVEKGEPSDQLAFLAT-V-LP  227 (590)
T ss_pred             HHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec---CCCchhhhhhhhcccHHHHHHHHHh-h-cc
Confidence            445555555555 778999999999998887766654  55444322   334555544444332 334433322 1 12


Q ss_pred             CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcC
Q psy17636        177 LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSL  221 (222)
Q Consensus       177 ~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~  221 (222)
                      ...+++||||.||+.  .+ .+|...|+++..+||||+.++|+..-..
T Consensus       228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~  275 (590)
T COG0514         228 QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQA  275 (590)
T ss_pred             ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHH
Confidence            334679999999976  88 9999999999999999999999986543

>TIGR01587 cas3_core CRISPR-associated helicase Cas3

Probab=99.10  E-value=4.8e-10  Score=97.07  Aligned_cols=116  Identities=14%  Similarity=0.076  Sum_probs=75.6

Q ss_pred             HHHHHHhhCC-CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC--CchHHHHHHHHHhhCC
Q psy17636        102 QVRSICDHVR-PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ--TQKLTWLTHNLVEFLS  178 (222)
Q Consensus       102 ~l~~Il~~~~-~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~--~~K~~~L~~~l~~~~~  178 (222)
                      .+..+++.++ .+.|+++||||+|+.+.+++..+...+........ .......|.+..+..  ..|...+..++.....
T Consensus       143 ~l~~~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  221 (358)
T TIGR01587       143 LILAVLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLK-EERRFERHRFIKIESDKVGEISSLERLLEFIKK  221 (358)
T ss_pred             HHHHHHHHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCc-cccccccccceeeccccccCHHHHHHHHHHhhC
Confidence            3555555554 47899999999998888877665443221111111 001112344433332  4566666555544445


Q ss_pred             CCeEEEEecccHH--HH-HHhHHCCc--eEEEecCCCCCChHHHh
Q psy17636        179 TGSLLIFVTKKCF--EL-VNLIAKNY--WLIQAVGILMCPKSPSR  218 (222)
Q Consensus       179 ~~~~IVF~nt~~~--~l-~~L~~~g~--~~~~lHg~~~q~~R~~~  218 (222)
                      .+++||||||+.+  .+ ..|++.+.  .+..+||+|++.+|...
T Consensus       222 ~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~  266 (358)
T TIGR01587       222 GGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKK  266 (358)
T ss_pred             CCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHH
Confidence            6799999999977  78 99988776  59999999999999764

This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional

Probab=99.04  E-value=2.3e-09  Score=101.61  Aligned_cols=113  Identities=20%  Similarity=0.265  Sum_probs=83.0

Q ss_pred             HHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHH-----HHHHHHHhh
Q psy17636        102 QVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLT-----WLTHNLVEF  176 (222)
Q Consensus       102 ~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~-----~L~~~l~~~  176 (222)
                      -+.++++.++++.|+++||||++.+  .+ ..++.++..|.+...   .-.|+++|..++..++..     .+...+.. 
T Consensus       138 ll~~i~~~lr~~lqlilmSATl~~~--~l-~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-  210 (812)
T PRK11664        138 LLLDVQQGLRDDLKLLIMSATLDND--RL-QQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAVARATAELLRQ-  210 (812)
T ss_pred             HHHHHHHhCCccceEEEEecCCCHH--HH-HHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHHHHHHHHHHHh-
Confidence            4556677788899999999999865  23 467777766665432   224788888777666653     23333322 


Q ss_pred             CCCCeEEEEecccHH--HH-HHhHH---CCceEEEecCCCCCChHHHhhcCC
Q psy17636        177 LSTGSLLIFVTKKCF--EL-VNLIA---KNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       177 ~~~~~~IVF~nt~~~--~l-~~L~~---~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                       ..+.+||||+++.+  .+ ..|..   .++.+..+||+|++++|..++..|
T Consensus       211 -~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~  261 (812)
T PRK11664        211 -ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPA  261 (812)
T ss_pred             -CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccc
Confidence             25799999999977  77 88876   589999999999999999988754

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB

Probab=99.03  E-value=2.9e-09  Score=100.86  Aligned_cols=112  Identities=18%  Similarity=0.213  Sum_probs=81.3

Q ss_pred             HHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHH-----HHHHHHHhhC
Q psy17636        103 VRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLT-----WLTHNLVEFL  177 (222)
Q Consensus       103 l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~-----~L~~~l~~~~  177 (222)
                      +..+...++++.|+++||||++...   ...++.++..|.+...   .-.|+++|..++..++..     .+...+..  
T Consensus       136 l~~i~~~lr~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~--  207 (819)
T TIGR01970       136 ALDVQSSLREDLKILAMSATLDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS--  207 (819)
T ss_pred             HHHHHHhcCCCceEEEEeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecchhhhHHHHHHHHHHHHHHh--
Confidence            4556666788999999999998763   3567777766665432   224788887776555432     23333322  


Q ss_pred             CCCeEEEEecccHH--HH-HHhHH---CCceEEEecCCCCCChHHHhhcCC
Q psy17636        178 STGSLLIFVTKKCF--EL-VNLIA---KNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       178 ~~~~~IVF~nt~~~--~l-~~L~~---~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ..+++||||+++.+  .+ ..|..   .++.+..|||+|++++|..++..|
T Consensus       208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~  258 (819)
T TIGR01970       208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPD  258 (819)
T ss_pred             cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhc
Confidence            25799999999977  67 88876   489999999999999999998754

This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.

>cd00268 DEADc DEAD-box helicases

Probab=98.97  E-value=5.5e-09  Score=83.13  Aligned_cols=82  Identities=45%  Similarity=0.778  Sum_probs=75.2

Q ss_pred             cCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC----------------------------------------
Q psy17636         60 FGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII----------------------------------------   99 (222)
Q Consensus        60 f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi----------------------------------------   99 (222)
                      |+++++++.+.+.+.+.||..|++.|.++++.+++|+|++                                        
T Consensus         1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~   80 (203)
T cd00268           1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE   80 (203)
T ss_pred             CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence            7899999999999999999999999999999999999988                                        


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~  160 (203)
T cd00268          81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGF  160 (203)
T ss_pred             HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccCh
Confidence                                                                                            


Q ss_pred             HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEE
Q psy17636        100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI  141 (222)
Q Consensus       100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i  141 (222)
                      ...+..++..++.++|++++|||+++.+..++..++++|+.|
T Consensus       161 ~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~  202 (203)
T cd00268         161 EDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI  202 (203)
T ss_pred             HHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence            455666777777889999999999999999999999999876

A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type

Probab=98.88  E-value=3.3e-08  Score=85.80  Aligned_cols=114  Identities=13%  Similarity=0.031  Sum_probs=75.0

Q ss_pred             HHHhhCCCCCeEEEEccccchHHHHHHHHh--cCCCcEEEeCC-----C-------------CCCCCCeeEEEEEcCCCc
Q psy17636        105 SICDHVRPNRQTLLFSATFKKRIEKLARDV--LTDPIKIVQGD-----I-------------GEANTDITQVVINLPQTQ  164 (222)
Q Consensus       105 ~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~--l~~p~~i~v~~-----~-------------~~~~~~i~q~~~~~~~~~  164 (222)
                      .+++......+++++|||+++.+.+.....  +..++.+..+.     .             ......+.+.+.. ....
T Consensus       173 ~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  251 (357)
T TIGR03158       173 QLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDF  251 (357)
T ss_pred             HHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCch
Confidence            344433445799999999999877776654  55555432222     0             0112367777766 3345


Q ss_pred             hHHHHHH---HHHhh---CCCCeEEEEecccHH--HH-HHhHHCC--ceEEEecCCCCCChHHHhh
Q psy17636        165 KLTWLTH---NLVEF---LSTGSLLIFVTKKCF--EL-VNLIAKN--YWLIQAVGILMCPKSPSRL  219 (222)
Q Consensus       165 K~~~L~~---~l~~~---~~~~~~IVF~nt~~~--~l-~~L~~~g--~~~~~lHg~~~q~~R~~~L  219 (222)
                      |...|..   .+.+.   .+.+++||||||+..  .+ ..|+..|  +.+..+||+|++.+|++.+
T Consensus       252 ~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~  317 (357)
T TIGR03158       252 KEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM  317 (357)
T ss_pred             hHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc
Confidence            5544422   22221   235699999999976  88 9998764  6889999999999998764

subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.

>PHA02558 uvsW UvsW helicase; Provisional

Probab=98.88  E-value=1.2e-08  Score=92.44  Aligned_cols=43  Identities=7%  Similarity=-0.089  Sum_probs=36.2

Q ss_pred             CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcC
Q psy17636        179 TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSL  221 (222)
Q Consensus       179 ~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~  221 (222)
                      ..+++|||++.+.  .+ +.|...|.++..+||+|++++|...+..
T Consensus       344 ~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~  389 (501)
T PHA02558        344 GENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKI  389 (501)
T ss_pred             CCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHH
Confidence            3578888876655  78 9999999999999999999999986654

>PRK10917 ATP-dependent DNA helicase RecG; Provisional

Probab=98.84  E-value=9.4e-08  Score=89.55  Aligned_cols=107  Identities=15%  Similarity=-0.006  Sum_probs=63.3

Q ss_pred             CCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhh-CCCCeEEEEeccc
Q psy17636        111 RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEF-LSTGSLLIFVTKK  189 (222)
Q Consensus       111 ~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~~~IVF~nt~  189 (222)
                      ...+|+++||||..+....+......++..+....  .....+.+.++...  . ...++..+.+. ....+++|||++.
T Consensus       407 ~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p--~~r~~i~~~~~~~~--~-~~~~~~~i~~~~~~g~q~~v~~~~i  481 (681)
T PRK10917        407 GENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELP--PGRKPITTVVIPDS--R-RDEVYERIREEIAKGRQAYVVCPLI  481 (681)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCC--CCCCCcEEEEeCcc--c-HHHHHHHHHHHHHcCCcEEEEEccc
Confidence            34689999999976554333321111333333211  22234555544322  2 22233444433 2346999999853


Q ss_pred             H--------H--HH-HHhHHC--CceEEEecCCCCCChHHHhhcCC
Q psy17636        190 C--------F--EL-VNLIAK--NYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       190 ~--------~--~l-~~L~~~--g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .        .  .+ +.|...  ++++..+||+|++++|...+..|
T Consensus       482 e~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F  527 (681)
T PRK10917        482 EESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAF  527 (681)
T ss_pred             ccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHH
Confidence            1        1  55 666655  58999999999999999988765

>KOG0350|consensus

Probab=98.81  E-value=1.1e-08  Score=89.65  Aligned_cols=111  Identities=17%  Similarity=0.095  Sum_probs=87.7

Q ss_pred             CCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCC----CCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEe
Q psy17636        111 RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGD----IGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFV  186 (222)
Q Consensus       111 ~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~----~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~  186 (222)
                      .+..+.++||||++..-.++...-+..|....+..    .-..+..+.|+++.++...|...+..++.. .+..++|+|+
T Consensus       358 ~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~-~k~~r~lcf~  436 (620)
T KOG0350|consen  358 YPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS-NKLNRTLCFV  436 (620)
T ss_pred             CchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHH-hhcceEEEEe
Confidence            34457899999998888888888888896665542    336788999999999998898888765544 4567999999


Q ss_pred             cccHH--HH-HH----hHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        187 TKKCF--EL-VN----LIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       187 nt~~~--~l-~~----L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      |+...  .+ ..    +...++++..+.|.+++..|.+.|+.|
T Consensus       437 ~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f  479 (620)
T KOG0350|consen  437 NSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKF  479 (620)
T ss_pred             cchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHH
Confidence            98754  44 44    445688899999999999999998876

>KOG0351|consensus

Probab=98.71  E-value=2.3e-07  Score=88.60  Aligned_cols=104  Identities=11%  Similarity=-0.048  Sum_probs=75.9

Q ss_pred             CeEEEEccccchHHHHHHHHhc--CCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH
Q psy17636        114 RQTLLFSATFKKRIEKLARDVL--TDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF  191 (222)
Q Consensus       114 ~Q~~lfSAT~~~~v~~l~~~~l--~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~  191 (222)
                      .-++..+||.+..|++-+-..+  .+|..+.   ......|+.-.+..-...+....++..+....+...+||+|.++.+
T Consensus       421 vP~iALTATAT~~v~~DIi~~L~l~~~~~~~---~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~  497 (941)
T KOG0351|consen  421 VPFIALTATATERVREDVIRSLGLRNPELFK---SSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKE  497 (941)
T ss_pred             CCeEEeehhccHHHHHHHHHHhCCCCcceec---ccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcch
Confidence            7899999999999888655554  4777543   3344566655544333233333344555666667899999998855


Q ss_pred             --HH-HHhHHCCceEEEecCCCCCChHHHhhc
Q psy17636        192 --EL-VNLIAKNYWLIQAVGILMCPKSPSRLS  220 (222)
Q Consensus       192 --~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~  220 (222)
                        .+ ..|+..|++++.+|++|+..+|.+.-.
T Consensus       498 ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~  529 (941)
T KOG0351|consen  498 CEQVSAVLRSLGKSAAFYHAGLPPKERETVQK  529 (941)
T ss_pred             HHHHHHHHHHhchhhHhhhcCCCHHHHHHHHH
Confidence              88 999999999999999999999998654

>PRK09751 putative ATP-dependent helicase Lhr; Provisional

Probab=98.70  E-value=1.4e-07  Score=93.62  Aligned_cols=119  Identities=16%  Similarity=0.223  Sum_probs=70.2

Q ss_pred             HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcC--CCcEEEeCCCCCCCCCeeEEEEEcCCCch------------
Q psy17636        100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLT--DPIKIVQGDIGEANTDITQVVINLPQTQK------------  165 (222)
Q Consensus       100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~--~p~~i~v~~~~~~~~~i~q~~~~~~~~~K------------  165 (222)
                      ...+.+|...++.+.|+++||||+++ .+++++ ++.  +++.|.. ........++ .++.+.+..+            
T Consensus       146 el~LeRL~~l~~~~~QrIgLSATI~n-~eevA~-~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~  221 (1490)
T PRK09751        146 ALSLERLDALLHTSAQRIGLSATVRS-ASDVAA-FLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDS  221 (1490)
T ss_pred             HHHHHHHHHhCCCCCeEEEEEeeCCC-HHHHHH-HhcCCCCEEEEC-CCCCcccceE-EEEecCchhhcccccccccccc
Confidence            34566666666778999999999987 466664 553  4665532 2222222333 2222222110            


Q ss_pred             --------HHHH-HHHHHhhCCCCeEEEEecccHH--HH-HHhHHCC---------------------------------
Q psy17636        166 --------LTWL-THNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKN---------------------------------  200 (222)
Q Consensus       166 --------~~~L-~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g---------------------------------  200 (222)
                              ...+ ...+.......++||||||+..  .+ ..|+..+                                 
T Consensus       222 ~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (1490)
T PRK09751        222 HAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDV  301 (1490)
T ss_pred             chhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccc
Confidence                    0111 1222223345799999999965  55 6665431                                 


Q ss_pred             ceEEEecCCCCCChHHHhhcCC
Q psy17636        201 YWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       201 ~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      +.+..+||+|++++|......|
T Consensus       302 ~ia~~HHGsLSkeeR~~IE~~f  323 (1490)
T PRK09751        302 FIARSHHGSVSKEQRAITEQAL  323 (1490)
T ss_pred             eeeeeccccCCHHHHHHHHHHH
Confidence            2267899999999999887654

>TIGR00643 recG ATP-dependent DNA helicase RecG

Probab=98.70  E-value=3.5e-07  Score=85.04  Aligned_cols=103  Identities=18%  Similarity=0.088  Sum_probs=60.4

Q ss_pred             CCeEEEEccccchHHHHHHHHhcC--CCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhh-CCCCeEEEEeccc
Q psy17636        113 NRQTLLFSATFKKRIEKLARDVLT--DPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEF-LSTGSLLIFVTKK  189 (222)
Q Consensus       113 ~~Q~~lfSAT~~~~v~~l~~~~l~--~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~~~IVF~nt~  189 (222)
                      .+|++++|||..+....++  ...  +...+..-.  .....+...++  ....+ ..++..+.+. ....+++|||++.
T Consensus       386 ~~~~l~~SATp~prtl~l~--~~~~l~~~~i~~~p--~~r~~i~~~~~--~~~~~-~~~~~~i~~~l~~g~q~~v~~~~i  458 (630)
T TIGR00643       386 TPHVLVMSATPIPRTLALT--VYGDLDTSIIDELP--PGRKPITTVLI--KHDEK-DIVYEFIEEEIAKGRQAYVVYPLI  458 (630)
T ss_pred             CCCEEEEeCCCCcHHHHHH--hcCCcceeeeccCC--CCCCceEEEEe--CcchH-HHHHHHHHHHHHhCCcEEEEEccc
Confidence            5789999999655432222  222  222222111  11223444443  33333 3344555543 2456999999764


Q ss_pred             H--------H--HH-HHhHH--CCceEEEecCCCCCChHHHhhcCC
Q psy17636        190 C--------F--EL-VNLIA--KNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       190 ~--------~--~l-~~L~~--~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .        .  .+ ..|..  .|+++..+||+|++++|...+..|
T Consensus       459 ~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F  504 (630)
T TIGR00643       459 EESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEF  504 (630)
T ss_pred             cccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHH
Confidence            1        1  45 56654  488999999999999999988765

>PRK12898 secA preprotein translocase subunit SecA; Reviewed

Probab=98.68  E-value=4.2e-08  Score=90.34  Aligned_cols=99  Identities=9%  Similarity=-0.059  Sum_probs=78.0

Q ss_pred             eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--
Q psy17636        115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--  191 (222)
Q Consensus       115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--  191 (222)
                      ....||||.+...+++...|.-+++.|....  .......+.++.++..+|...|...+.... ...++||||+|+..  
T Consensus       410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~k--p~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se  487 (656)
T PRK12898        410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNR--PSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASE  487 (656)
T ss_pred             HHhcccCcChHHHHHHHHHHCCCeEEeCCCC--CccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence            5678999999988899999988887765433  223345567788888899999988876643 24689999999976  


Q ss_pred             HH-HHhHHCCceEEEecCCCCCChH
Q psy17636        192 EL-VNLIAKNYWLIQAVGILMCPKS  215 (222)
Q Consensus       192 ~l-~~L~~~g~~~~~lHg~~~q~~R  215 (222)
                      .+ ..|...|+++..|||++++.+|
T Consensus       488 ~L~~~L~~~gi~~~~Lhg~~~~rE~  512 (656)
T PRK12898        488 RLSALLREAGLPHQVLNAKQDAEEA  512 (656)
T ss_pred             HHHHHHHHCCCCEEEeeCCcHHHHH
Confidence            78 9999999999999998654444

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional

Probab=98.65  E-value=2.6e-07  Score=90.42  Aligned_cols=111  Identities=16%  Similarity=0.182  Sum_probs=74.2

Q ss_pred             HHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCc---hHHHH---HHHHHh-
Q psy17636        103 VRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQ---KLTWL---THNLVE-  175 (222)
Q Consensus       103 l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~---K~~~L---~~~l~~-  175 (222)
                      ++.++.. +++.|+++||||++.  +.+++.|.+.| .|.+....   -.|+++|..+...+   +.+.+   +..+.. 
T Consensus       209 Lk~lL~~-rpdlKvILmSATid~--e~fs~~F~~ap-vI~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l  281 (1294)
T PRK11131        209 LKELLPR-RPDLKVIITSATIDP--ERFSRHFNNAP-IIEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDEL  281 (1294)
T ss_pred             HHHhhhc-CCCceEEEeeCCCCH--HHHHHHcCCCC-EEEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHH
Confidence            4444332 247899999999974  46776665556 45665432   23677777664322   23333   222222 


Q ss_pred             -hCCCCeEEEEecccHH--HH-HHhHHCCce---EEEecCCCCCChHHHhhc
Q psy17636        176 -FLSTGSLLIFVTKKCF--EL-VNLIAKNYW---LIQAVGILMCPKSPSRLS  220 (222)
Q Consensus       176 -~~~~~~~IVF~nt~~~--~l-~~L~~~g~~---~~~lHg~~~q~~R~~~L~  220 (222)
                       ....+.+||||+++.+  .+ ..|...|++   +..|||+|++++|.+.+.
T Consensus       282 ~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~  333 (1294)
T PRK11131        282 GREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQ  333 (1294)
T ss_pred             hcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhc
Confidence             1245789999999987  78 999888765   678999999999998875

>KOG0353|consensus

Probab=98.34  E-value=6.6e-06  Score=70.53  Aligned_cols=104  Identities=12%  Similarity=0.045  Sum_probs=72.9

Q ss_pred             CCCeEEEEccccchHHHHHHHHhcC--CCcEEEeCCCCCCCCCeeEEEEEcCCCc--hHHHHHHHHHhhCCCCeEEEEec
Q psy17636        112 PNRQTLLFSATFKKRIEKLARDVLT--DPIKIVQGDIGEANTDITQVVINLPQTQ--KLTWLTHNLVEFLSTGSLLIFVT  187 (222)
Q Consensus       112 ~~~Q~~lfSAT~~~~v~~l~~~~l~--~p~~i~v~~~~~~~~~i~q~~~~~~~~~--K~~~L~~~l~~~~~~~~~IVF~n  187 (222)
                      +...++.++||.+..|-.-++..+.  ....++.+   ...+++...+..-|..+  -.+-+..++...+.....||||-
T Consensus       249 ~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~---fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~  325 (695)
T KOG0353|consen  249 KGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG---FNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCF  325 (695)
T ss_pred             CCCceeeeehhhhcchhhHHHHHHhHHhhheeecc---cCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEe
Confidence            4567899999999888777776654  33444332   34566776666666532  23334444544455568899997


Q ss_pred             ccHH--HH-HHhHHCCceEEEecCCCCCChHHHh
Q psy17636        188 KKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSR  218 (222)
Q Consensus       188 t~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~  218 (222)
                      ++.+  .+ ..|+..|+.+..+|..|..++|..+
T Consensus       326 sq~d~ekva~alkn~gi~a~~yha~lep~dks~~  359 (695)
T KOG0353|consen  326 SQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGA  359 (695)
T ss_pred             ccccHHHHHHHHHhcCccccccccccCccccccc
Confidence            7755  88 9999999999999999999988643

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA

Probab=98.33  E-value=6.4e-06  Score=81.10  Aligned_cols=112  Identities=18%  Similarity=0.223  Sum_probs=73.4

Q ss_pred             HHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCC------chHHHHHHHHHh
Q psy17636        102 QVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQT------QKLTWLTHNLVE  175 (222)
Q Consensus       102 ~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~------~K~~~L~~~l~~  175 (222)
                      .+++++.. .++.|++++|||++.  +.+++.|...|+ |.+....   -.++.+|..+...      ++...+...+..
T Consensus       201 lLk~il~~-rpdLKlIlmSATld~--~~fa~~F~~apv-I~V~Gr~---~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~  273 (1283)
T TIGR01967       201 YLKQLLPR-RPDLKIIITSATIDP--ERFSRHFNNAPI-IEVSGRT---YPVEVRYRPLVEEQEDDDLDQLEAILDAVDE  273 (1283)
T ss_pred             HHHHHHhh-CCCCeEEEEeCCcCH--HHHHHHhcCCCE-EEECCCc---ccceeEEecccccccchhhhHHHHHHHHHHH
Confidence            35555544 357899999999974  567766655554 5554322   1355555544321      233334343332


Q ss_pred             h--CCCCeEEEEecccHH--HH-HHhHHCC---ceEEEecCCCCCChHHHhhc
Q psy17636        176 F--LSTGSLLIFVTKKCF--EL-VNLIAKN---YWLIQAVGILMCPKSPSRLS  220 (222)
Q Consensus       176 ~--~~~~~~IVF~nt~~~--~l-~~L~~~g---~~~~~lHg~~~q~~R~~~L~  220 (222)
                      .  ...+.+|||++++.+  .+ ..|...+   +.+..|||+|++++|...+.
T Consensus       274 l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~  326 (1283)
T TIGR01967       274 LFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQ  326 (1283)
T ss_pred             HHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhC
Confidence            2  135799999999987  77 8888764   46899999999999998765

This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]

Probab=98.28  E-value=1.8e-05  Score=75.70  Aligned_cols=120  Identities=11%  Similarity=0.021  Sum_probs=76.9

Q ss_pred             HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcC---------CCchHHHHH
Q psy17636        100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLP---------QTQKLTWLT  170 (222)
Q Consensus       100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~---------~~~K~~~L~  170 (222)
                      ...+.++++..+...|+++.|||+... .+++..+.+......+... ..+...+..+..-+         ...+...+.
T Consensus       219 lRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~-g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~  296 (851)
T COG1205         219 LRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDED-GSPRGLRYFVRREPPIRELAESIRRSALAELA  296 (851)
T ss_pred             HHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCC-CCCCCceEEEEeCCcchhhhhhcccchHHHHH
Confidence            444445555556789999999999666 5677777776655544433 34455555555555         224444443


Q ss_pred             HHHHhhC-CCCeEEEEecccHH------HH-HHhHHCC----ceEEEecCCCCCChHHHhhcC
Q psy17636        171 HNLVEFL-STGSLLIFVTKKCF------EL-VNLIAKN----YWLIQAVGILMCPKSPSRLSL  221 (222)
Q Consensus       171 ~~l~~~~-~~~~~IVF~nt~~~------~l-~~L~~~g----~~~~~lHg~~~q~~R~~~L~~  221 (222)
                      .+..... +.-++|+|+.++..      .. ..+...|    ..+..+||+|..++|......
T Consensus       297 ~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~  359 (851)
T COG1205         297 TLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAE  359 (851)
T ss_pred             HHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHH
Confidence            3222222 34699999998855      22 4555566    789999999999999876554

>PRK09200 preprotein translocase subunit SecA; Reviewed

Probab=97.98  E-value=3.5e-05  Score=72.83  Aligned_cols=102  Identities=8%  Similarity=-0.138  Sum_probs=70.1

Q ss_pred             eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCee-EEEEEcCCCchHHHHHHHHHhh-CCCCeEEEEecccHH-
Q psy17636        115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDIT-QVVINLPQTQKLTWLTHNLVEF-LSTGSLLIFVTKKCF-  191 (222)
Q Consensus       115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~-q~~~~~~~~~K~~~L~~~l~~~-~~~~~~IVF~nt~~~-  191 (222)
                      ....+|.|...+-+++...|--+  .+.+.+. ....... .-.+++...+|...|...+... ....++||||+|+.. 
T Consensus       365 kl~GmTGTa~t~~~e~~~~Y~l~--v~~IPt~-kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~s  441 (790)
T PRK09200        365 KLSGMTGTAKTEEKEFFEVYNME--VVQIPTN-RPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQS  441 (790)
T ss_pred             HHhccCCCChHHHHHHHHHhCCc--EEECCCC-CCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHH
Confidence            35678888865556665555222  3333322 2221122 2345567788999998887664 345699999999876 


Q ss_pred             -HH-HHhHHCCceEEEecCCCCCChHHHhh
Q psy17636        192 -EL-VNLIAKNYWLIQAVGILMCPKSPSRL  219 (222)
Q Consensus       192 -~l-~~L~~~g~~~~~lHg~~~q~~R~~~L  219 (222)
                       .+ ..|...|+++..|||++++++|....
T Consensus       442 e~l~~~L~~~gi~~~~L~~~~~~~e~~~i~  471 (790)
T PRK09200        442 ETFSKLLDEAGIPHNLLNAKNAAKEAQIIA  471 (790)
T ss_pred             HHHHHHHHHCCCCEEEecCCccHHHHHHHH
Confidence             88 99999999999999999988876543

>PRK04914 ATP-dependent helicase HepA; Validated

Probab=97.96  E-value=1e-05  Score=77.98  Aligned_cols=59  Identities=12%  Similarity=0.125  Sum_probs=49.7

Q ss_pred             CchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHh-HHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        163 TQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNL-IAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       163 ~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L-~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ..|..+|..+|... ...|+||||+++..  .+ ..| ...|++++.+||+|++.+|..++..|
T Consensus       478 d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F  540 (956)
T PRK04914        478 DPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF  540 (956)
T ss_pred             CHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence            45788888777654 36799999999977  88 999 46799999999999999999998765

>PRK09694 helicase Cas3; Provisional

Probab=97.95  E-value=9.9e-05  Score=70.78  Aligned_cols=48  Identities=8%  Similarity=-0.070  Sum_probs=37.0

Q ss_pred             HHHHHHhh-CCCCeEEEEecccHH--HH-HHhHHCC---ceEEEecCCCCCChHH
Q psy17636        169 LTHNLVEF-LSTGSLLIFVTKKCF--EL-VNLIAKN---YWLIQAVGILMCPKSP  216 (222)
Q Consensus       169 L~~~l~~~-~~~~~~IVF~nt~~~--~l-~~L~~~g---~~~~~lHg~~~q~~R~  216 (222)
                      +++.+.+. ...++++|||||+.+  ++ ..|+..+   .++..+||.+.+.+|.
T Consensus       549 ~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~  603 (878)
T PRK09694        549 LLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRR  603 (878)
T ss_pred             HHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHH
Confidence            33444432 345789999999977  78 8888765   6899999999999994

>TIGR03714 secA2 accessory Sec system translocase SecA2

Probab=97.95  E-value=3.5e-05  Score=72.35  Aligned_cols=103  Identities=8%  Similarity=-0.138  Sum_probs=70.4

Q ss_pred             eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--
Q psy17636        115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--  191 (222)
Q Consensus       115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--  191 (222)
                      ....+|.|...+-.++...|-  -..+.+.+.......-....+++...+|...+...+.+.. ...++||||+|+..  
T Consensus       361 kl~GmTGTa~~~~~Ef~~iY~--l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se  438 (762)
T TIGR03714       361 KLSGMTGTGKVAEKEFIETYS--LSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSE  438 (762)
T ss_pred             hhcccCCCChhHHHHHHHHhC--CCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHH
Confidence            456788887666666765442  2223333221111111123566777889999988776643 45699999999866  


Q ss_pred             HH-HHhHHCCceEEEecCCCCCChHHHhh
Q psy17636        192 EL-VNLIAKNYWLIQAVGILMCPKSPSRL  219 (222)
Q Consensus       192 ~l-~~L~~~g~~~~~lHg~~~q~~R~~~L  219 (222)
                      .+ ..|...|+++..|||++++++|.-..
T Consensus       439 ~ls~~L~~~gi~~~~L~a~~~~~E~~ii~  467 (762)
T TIGR03714       439 IYSELLLREGIPHNLLNAQNAAKEAQIIA  467 (762)
T ss_pred             HHHHHHHHCCCCEEEecCCChHHHHHHHH
Confidence            78 99999999999999999988876543

Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Probab=97.81  E-value=8e-05  Score=54.31  Aligned_cols=69  Identities=28%  Similarity=0.206  Sum_probs=53.1

Q ss_pred             eeEEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        153 ITQVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       153 i~q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      |.+.+...+ +.|...+...+.+.. ..+++||||++...  .+ ..|...+..+..+||+++..+|...+..|
T Consensus         2 i~~~~~~~~-~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f   74 (131)
T cd00079           2 IKQYVLPVE-DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDF   74 (131)
T ss_pred             cEEEEEECC-HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHH
Confidence            445555443 368888877776654 35799999998866  77 88988899999999999999998876543

>PRK13104 secA preprotein translocase subunit SecA; Reviewed

Probab=97.75  E-value=0.00011  Score=69.90  Aligned_cols=105  Identities=10%  Similarity=-0.086  Sum_probs=72.6

Q ss_pred             eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCC-CCeEEEEecccHH--
Q psy17636        115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLS-TGSLLIFVTKKCF--  191 (222)
Q Consensus       115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~-~~~~IVF~nt~~~--  191 (222)
                      ....+|.|...+..++...|--+.  +.+.+.......-..-.++....+|+..+...+.+... ..|+||||+|+..  
T Consensus       381 kLsGMTGTa~te~~Ef~~iY~l~V--v~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE  458 (896)
T PRK13104        381 KLSGMTGTADTEAYEFQQIYNLEV--VVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASE  458 (896)
T ss_pred             hhccCCCCChhHHHHHHHHhCCCE--EECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHH
Confidence            345677787666666666553333  33332221111112345666778899988887766543 4599999999976  


Q ss_pred             HH-HHhHHCCceEEEecCCCCCChHHHhhcC
Q psy17636        192 EL-VNLIAKNYWLIQAVGILMCPKSPSRLSL  221 (222)
Q Consensus       192 ~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~  221 (222)
                      .+ ..|...|+++..|||++.+.+|+-.+..
T Consensus       459 ~ls~~L~~~gi~h~vLnak~~q~Ea~iia~A  489 (896)
T PRK13104        459 FLSQLLKKENIKHQVLNAKFHEKEAQIIAEA  489 (896)
T ss_pred             HHHHHHHHcCCCeEeecCCCChHHHHHHHhC
Confidence            78 9999999999999999999999876643

>TIGR00963 secA preprotein translocase, SecA subunit

Probab=97.63  E-value=0.00017  Score=67.54  Aligned_cols=102  Identities=9%  Similarity=-0.086  Sum_probs=69.0

Q ss_pred             eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCee-EEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH-
Q psy17636        115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDIT-QVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF-  191 (222)
Q Consensus       115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~-q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~-  191 (222)
                      ....+|.|...+..++...|--+.+.  +.+.. ...... .-.++....+|+..+...+.+.. ...++||||+|... 
T Consensus       342 kl~GmTGTa~te~~E~~~iY~l~vv~--IPtnk-p~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~s  418 (745)
T TIGR00963       342 KLSGMTGTAKTEEEEFEKIYNLEVVV--VPTNR-PVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKS  418 (745)
T ss_pred             hhhccCCCcHHHHHHHHHHhCCCEEE--eCCCC-CeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHH
Confidence            45678888876666666666334333  33221 111111 22445556788888877665443 34699999999976 


Q ss_pred             -HH-HHhHHCCceEEEecCCCCCChHHHhhcC
Q psy17636        192 -EL-VNLIAKNYWLIQAVGILMCPKSPSRLSL  221 (222)
Q Consensus       192 -~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~  221 (222)
                       .+ ..|...|+++..|||+  |.+|+..+-.
T Consensus       419 e~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~  448 (745)
T TIGR00963       419 ELLSNLLKERGIPHNVLNAK--NHEREAEIIA  448 (745)
T ss_pred             HHHHHHHHHcCCCeEEeeCC--hHHHHHHHHH
Confidence             78 9999999999999999  8889887643

The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.

>PRK12904 preprotein translocase subunit SecA; Reviewed

Probab=97.63  E-value=0.00017  Score=68.37  Aligned_cols=102  Identities=10%  Similarity=-0.070  Sum_probs=70.2

Q ss_pred             eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCee-EEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH-
Q psy17636        115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDIT-QVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF-  191 (222)
Q Consensus       115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~-q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~-  191 (222)
                      ....+|.|...+..++...|--+.+.  +.+. ....... .-.++....+|+..+...+.+.. ...++||||+|+.. 
T Consensus       367 kl~GmTGTa~te~~E~~~iY~l~vv~--IPtn-kp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~s  443 (830)
T PRK12904        367 KLAGMTGTADTEAEEFREIYNLDVVV--IPTN-RPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKS  443 (830)
T ss_pred             hhcccCCCcHHHHHHHHHHhCCCEEE--cCCC-CCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHH
Confidence            45678888876666666666333333  3322 1111122 23455566889999988876633 34699999999976 


Q ss_pred             -HH-HHhHHCCceEEEecCCCCCChHHHhhcC
Q psy17636        192 -EL-VNLIAKNYWLIQAVGILMCPKSPSRLSL  221 (222)
Q Consensus       192 -~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~  221 (222)
                       .+ ..|...|+++..|||+  |.+|+..+-.
T Consensus       444 e~Ls~~L~~~gi~~~vLnak--q~eREa~Iia  473 (830)
T PRK12904        444 ELLSKLLKKAGIPHNVLNAK--NHEREAEIIA  473 (830)
T ss_pred             HHHHHHHHHCCCceEeccCc--hHHHHHHHHH
Confidence             78 9999999999999996  8889887643

>PRK12906 secA preprotein translocase subunit SecA; Reviewed

Probab=97.50  E-value=0.00028  Score=66.66  Aligned_cols=101  Identities=9%  Similarity=-0.114  Sum_probs=67.3

Q ss_pred             eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--
Q psy17636        115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--  191 (222)
Q Consensus       115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--  191 (222)
                      ....+|.|...+-.++...|--+  .+.+.+.......-..-.++.+..+|...+...+.... ...++||||+|+..  
T Consensus       377 kl~GmTGTa~~e~~Ef~~iY~l~--vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se  454 (796)
T PRK12906        377 KLSGMTGTAKTEEEEFREIYNME--VITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSE  454 (796)
T ss_pred             hhhccCCCCHHHHHHHHHHhCCC--EEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHH
Confidence            45678888876666665555333  23333321111111123455566789998888776543 34699999999976  


Q ss_pred             HH-HHhHHCCceEEEecCCCCCChHHH
Q psy17636        192 EL-VNLIAKNYWLIQAVGILMCPKSPS  217 (222)
Q Consensus       192 ~l-~~L~~~g~~~~~lHg~~~q~~R~~  217 (222)
                      .+ ..|...|+++..|||++.+++|+-
T Consensus       455 ~ls~~L~~~gi~~~~Lna~~~~~Ea~i  481 (796)
T PRK12906        455 RLSHLLDEAGIPHAVLNAKNHAKEAEI  481 (796)
T ss_pred             HHHHHHHHCCCCeeEecCCcHHHHHHH
Confidence            88 999999999999999988665543

>KOG0352|consensus

Probab=97.45  E-value=0.00021  Score=62.34  Aligned_cols=103  Identities=14%  Similarity=0.040  Sum_probs=64.4

Q ss_pred             CCeEEEEccccchHHHHHHH--HhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-CchHHHHHHHHHhhCC-----------
Q psy17636        113 NRQTLLFSATFKKRIEKLAR--DVLTDPIKIVQGDIGEANTDITQVVINLPQ-TQKLTWLTHNLVEFLS-----------  178 (222)
Q Consensus       113 ~~Q~~lfSAT~~~~v~~l~~--~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~~~~-----------  178 (222)
                      +.--+.++||.+.+|++-+.  ..+++|+-+--.+.-.  .|+-.....-+. .+-+..|..+-...++           
T Consensus       176 ~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR--~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~  253 (641)
T KOG0352|consen  176 GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFR--DNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKT  253 (641)
T ss_pred             CCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchh--hhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCC
Confidence            34578899999999988443  4466888764332211  111100000011 2333334333333222           


Q ss_pred             -CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHH
Q psy17636        179 -TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPS  217 (222)
Q Consensus       179 -~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~  217 (222)
                       .+-.||||.||..  .+ -.|...|+.+.++|.+|...+|-.
T Consensus       254 ~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTe  296 (641)
T KOG0352|consen  254 FTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTE  296 (641)
T ss_pred             cCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHH
Confidence             2358999999966  88 899999999999999999999864

>PRK13107 preprotein translocase subunit SecA; Reviewed

Probab=97.39  E-value=0.00058  Score=65.06  Aligned_cols=104  Identities=6%  Similarity=-0.099  Sum_probs=70.7

Q ss_pred             eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCee-EEEEEcCCCchHHHHHHHHHhhCC-CCeEEEEecccHH-
Q psy17636        115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDIT-QVVINLPQTQKLTWLTHNLVEFLS-TGSLLIFVTKKCF-  191 (222)
Q Consensus       115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~-q~~~~~~~~~K~~~L~~~l~~~~~-~~~~IVF~nt~~~-  191 (222)
                      ....+|.|...+..++...|--+.+.  +.+.. ...... .-.++....+|+..+.+.+.+... ..++||||+|... 
T Consensus       386 kL~GMTGTa~te~~Ef~~iY~l~Vv~--IPTnk-p~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~s  462 (908)
T PRK13107        386 KLAGMTGTADTEAFEFQHIYGLDTVV--VPTNR-PMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQS  462 (908)
T ss_pred             HhhcccCCChHHHHHHHHHhCCCEEE--CCCCC-CccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHH
Confidence            34567778766666666655333333  33221 111122 224455668899888877766543 3599999999876 


Q ss_pred             -HH-HHhHHCCceEEEecCCCCCChHHHhhcC
Q psy17636        192 -EL-VNLIAKNYWLIQAVGILMCPKSPSRLSL  221 (222)
Q Consensus       192 -~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~  221 (222)
                       .+ ..|...|+++..|||++++.+|+-.+..
T Consensus       463 e~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~A  494 (908)
T PRK13107        463 ELLARLMVKEKIPHEVLNAKFHEREAEIVAQA  494 (908)
T ss_pred             HHHHHHHHHCCCCeEeccCcccHHHHHHHHhC
Confidence             78 9999999999999999999999876543

>PRK12900 secA preprotein translocase subunit SecA; Reviewed

Probab=97.30  E-value=0.00064  Score=65.23  Aligned_cols=102  Identities=9%  Similarity=-0.062  Sum_probs=67.4

Q ss_pred             eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--
Q psy17636        115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--  191 (222)
Q Consensus       115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--  191 (222)
                      ....++.|...+..++...|--+.+.  +.+.......-..-.++....+|...|...+.... ...++||||+|+..  
T Consensus       535 kLaGMTGTA~te~~Ef~~iY~L~Vv~--IPTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE  612 (1025)
T PRK12900        535 KLAGMTGTAETEASEFFEIYKLDVVV--IPTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSE  612 (1025)
T ss_pred             hhcccCCCChhHHHHHHHHhCCcEEE--CCCCCCcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHH
Confidence            34556777766666665555223332  33222111111223455666889999988886543 34699999999866  


Q ss_pred             HH-HHhHHCCceEEEecCCCCCChHHHhhc
Q psy17636        192 EL-VNLIAKNYWLIQAVGILMCPKSPSRLS  220 (222)
Q Consensus       192 ~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~  220 (222)
                      .| ..|...|+++..||+  .|.+|+..+-
T Consensus       613 ~Ls~~L~~~gI~h~vLna--kq~~REa~Ii  640 (1025)
T PRK12900        613 TLSRMLRAKRIAHNVLNA--KQHDREAEIV  640 (1025)
T ss_pred             HHHHHHHHcCCCceeecC--CHHHhHHHHH
Confidence            78 999999999999998  5778887653

>PRK05298 excinuclease ABC subunit B; Provisional

Probab=97.29  E-value=0.00035  Score=65.45  Aligned_cols=60  Identities=8%  Similarity=-0.041  Sum_probs=49.5

Q ss_pred             CchHHHHHHHHHhhCC-CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        163 TQKLTWLTHNLVEFLS-TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       163 ~~K~~~L~~~l~~~~~-~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ..+...|+..|..... ..++||||+|+..  .+ ..|...|+++..+||+|++.+|..++..|
T Consensus       429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f  492 (652)
T PRK05298        429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDL  492 (652)
T ss_pred             cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHH
Confidence            4556677777776543 4689999999866  88 99999999999999999999999887654

>TIGR00631 uvrb excinuclease ABC, B subunit

Probab=97.26  E-value=0.00039  Score=64.97  Aligned_cols=60  Identities=8%  Similarity=-0.034  Sum_probs=49.7

Q ss_pred             CchHHHHHHHHHhhC-CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        163 TQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       163 ~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ..+...|+..+.... ...++||||+|+..  .+ ..|...|+++..+||+|++.+|...+..|
T Consensus       425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~f  488 (655)
T TIGR00631       425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDL  488 (655)
T ss_pred             cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHH
Confidence            556677777777654 34699999999866  88 99999999999999999999999887653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]

Probab=97.13  E-value=0.0017  Score=61.74  Aligned_cols=107  Identities=15%  Similarity=0.101  Sum_probs=68.1

Q ss_pred             CCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCC---CCCCCeeEEEE-EcCCCchHHHHHHHH-HhhCCCCeEEEEec
Q psy17636        113 NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIG---EANTDITQVVI-NLPQTQKLTWLTHNL-VEFLSTGSLLIFVT  187 (222)
Q Consensus       113 ~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~---~~~~~i~q~~~-~~~~~~K~~~L~~~l-~~~~~~~~~IVF~n  187 (222)
                      +.-++++|||+|+..++.....+.+...+......   .....+.+... .+..... ..+.... ......++++|=||
T Consensus       370 g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~kvlvI~N  448 (733)
T COG1203         370 GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQ-EELIELISEEVKEGKKVLVIVN  448 (733)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhh-HhhhhcchhhhccCCcEEEEEe
Confidence            67799999999999999888887765554332110   00111111111 1111100 0111222 22234579999999


Q ss_pred             ccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhc
Q psy17636        188 KKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLS  220 (222)
Q Consensus       188 t~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~  220 (222)
                      |...  ++ ..|+..+-++..|||.+....|+....
T Consensus       449 TV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~  484 (733)
T COG1203         449 TVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKER  484 (733)
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHH
Confidence            9876  88 999998888999999999999998765

>PRK13766 Hef nuclease; Provisional

Probab=96.80  E-value=0.0023  Score=61.18  Aligned_cols=60  Identities=17%  Similarity=0.137  Sum_probs=49.8

Q ss_pred             CchHHHHHHHHHhhC---CCCeEEEEecccHH--HH-HHhHHCCceEEEecCC--------CCCChHHHhhcCC
Q psy17636        163 TQKLTWLTHNLVEFL---STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGI--------LMCPKSPSRLSLV  222 (222)
Q Consensus       163 ~~K~~~L~~~l~~~~---~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~--------~~q~~R~~~L~~~  222 (222)
                      ..|+..|.++|.+..   +.+++||||+++..  .| ..|...|+++..+||.        |++.+|...+..|
T Consensus       346 ~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F  419 (773)
T PRK13766        346 HPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKF  419 (773)
T ss_pred             ChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHH
Confidence            568888888776643   45799999999876  88 9999999999999997        9999998887654

>TIGR00595 priA primosomal protein N'

Probab=96.57  E-value=0.018  Score=52.45  Aligned_cols=31  Identities=10%  Similarity=-0.009  Sum_probs=23.7

Q ss_pred             HH-HHhHHC--CceEEEecCCCCCChH--HHhhcCC
Q psy17636        192 EL-VNLIAK--NYWLIQAVGILMCPKS--PSRLSLV  222 (222)
Q Consensus       192 ~l-~~L~~~--g~~~~~lHg~~~q~~R--~~~L~~~  222 (222)
                      .+ +.|++.  +.++..+|||+++.++  +..|..|
T Consensus       273 ~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f  308 (505)
T TIGR00595       273 QVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQF  308 (505)
T ss_pred             HHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHH
Confidence            56 677665  8899999999998877  6666543

All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ]

Probab=96.53  E-value=0.034  Score=49.53  Aligned_cols=105  Identities=16%  Similarity=0.199  Sum_probs=74.4

Q ss_pred             CeEEEEccccchHHHHHHHHhcCCC---cEEEeCCC-----CCCCCCeeEEEEEcCCC-------chHHHHHHHHHh-h-
Q psy17636        114 RQTLLFSATFKKRIEKLARDVLTDP---IKIVQGDI-----GEANTDITQVVINLPQT-------QKLTWLTHNLVE-F-  176 (222)
Q Consensus       114 ~Q~~lfSAT~~~~v~~l~~~~l~~p---~~i~v~~~-----~~~~~~i~q~~~~~~~~-------~K~~~L~~~l~~-~-  176 (222)
                      |||++||+..++++..+....+.|.   +.+.....     ......|+|.+..++..       .++.+....+.. . 
T Consensus       216 RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~  295 (442)
T PF06862_consen  216 RQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLK  295 (442)
T ss_pred             eEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhh
Confidence            8999999999999999999977653   22222222     24566788998875532       344444332222 1 


Q ss_pred             --CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHh
Q psy17636        177 --LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSR  218 (222)
Q Consensus       177 --~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~  218 (222)
                        ...+.+|||+.+=-+  .| ++|++.+++.+++|---++.+-.++
T Consensus       296 ~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRA  342 (442)
T PF06862_consen  296 RDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRA  342 (442)
T ss_pred             hccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHH
Confidence              134689999999888  88 9999999999999988777774433

; GO: 0005634 nucleus

>COG1204 Superfamily II helicase [General function prediction only]

Probab=96.51  E-value=0.038  Score=52.77  Aligned_cols=37  Identities=19%  Similarity=0.247  Sum_probs=27.6

Q ss_pred             CCCCHHHHHHHHHCCCCCCCHHHHhHHHH-HhCCCCCC
Q psy17636         63 FGFDEVLMKALRKCEYTSPTPIQAQAVPA-ALSGRDII   99 (222)
Q Consensus        63 l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~-il~g~dvi   99 (222)
                      ..+++.+.+.++..|+.+..|-|+.++.. +.+|+|++
T Consensus        14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~l   51 (766)
T COG1204          14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVL   51 (766)
T ss_pred             ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEE
Confidence            44788888888888997777666666555 55669988

>KOG0951|consensus

Probab=96.40  E-value=0.039  Score=54.38  Aligned_cols=104  Identities=15%  Similarity=0.078  Sum_probs=60.5

Q ss_pred             CCeEEEEccccchHHHHHHHHhcCCC-cEEEeCCCCCCCCCeeEEEEEcCCC--chH-H----HHHHHHHhhCCCCeEEE
Q psy17636        113 NRQTLLFSATFKKRIEKLARDVLTDP-IKIVQGDIGEANTDITQVVINLPQT--QKL-T----WLTHNLVEFLSTGSLLI  184 (222)
Q Consensus       113 ~~Q~~lfSAT~~~~v~~l~~~~l~~p-~~i~v~~~~~~~~~i~q~~~~~~~~--~K~-~----~L~~~l~~~~~~~~~IV  184 (222)
                      ....+.+|||+|.- +..+....-++ -....++.-. +--++|.|+-+...  .|. .    ..++.+.+..+.+++||
T Consensus       474 ~~RlVGLSATLPNy-~DV~~Fl~v~~~glf~fd~syR-pvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLV  551 (1674)
T KOG0951|consen  474 GSRLVGLSATLPNY-EDVASFLRVDPEGLFYFDSSYR-PVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLV  551 (1674)
T ss_pred             CceeeeecccCCch-hhhHHHhccCcccccccCcccC-cCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEE
Confidence            57889999999864 23332111232 2222222222 34588888877653  332 1    22233334445689999


Q ss_pred             EecccHH--HH-HHhH--------------HC-----------------------CceEEEecCCCCCChHHHh
Q psy17636        185 FVTKKCF--EL-VNLI--------------AK-----------------------NYWLIQAVGILMCPKSPSR  218 (222)
Q Consensus       185 F~nt~~~--~l-~~L~--------------~~-----------------------g~~~~~lHg~~~q~~R~~~  218 (222)
                      ||.+|++  +. ..++              +.                       -+.++..|+||+..+|...
T Consensus       552 FVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~  625 (1674)
T KOG0951|consen  552 FVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELV  625 (1674)
T ss_pred             EEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHH
Confidence            9998855  22 2222              11                       2567889999999999754

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases

Probab=95.99  E-value=0.013  Score=44.67  Aligned_cols=30  Identities=37%  Similarity=0.532  Sum_probs=19.4

Q ss_pred             HHHHHHHhhCC--CCCeEEEEccccchHHHHH
Q psy17636        101 PQVRSICDHVR--PNRQTLLFSATFKKRIEKL  130 (222)
Q Consensus       101 ~~l~~Il~~~~--~~~Q~~lfSAT~~~~v~~l  130 (222)
                      ..+..|++.+.  .+.|++++|||+++.++++
T Consensus       138 ~~~~~i~~~~~~~~~~~~i~~SAT~~~~~~~~  169 (169)
T PF00270_consen  138 AMLKSILRRLKRFKNIQIILLSATLPSNVEKL  169 (169)
T ss_dssp             HHHHHHHHHSHTTTTSEEEEEESSSTHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCcEEEEeeCCChhHhhC
Confidence            35666666652  2577888888888666653

Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....

>PRK05580 primosome assembly protein PriA; Validated

Probab=95.71  E-value=0.1  Score=49.38  Aligned_cols=31  Identities=10%  Similarity=-0.071  Sum_probs=23.1

Q ss_pred             HH-HHhHHC--CceEEEecCCCCC--ChHHHhhcCC
Q psy17636        192 EL-VNLIAK--NYWLIQAVGILMC--PKSPSRLSLV  222 (222)
Q Consensus       192 ~l-~~L~~~--g~~~~~lHg~~~q--~~R~~~L~~~  222 (222)
                      .+ +.|++.  |.++..+|||+.+  .+|++.|..|
T Consensus       441 ~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f  476 (679)
T PRK05580        441 RLEEELAELFPEARILRIDRDTTRRKGALEQLLAQF  476 (679)
T ss_pred             HHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHH
Confidence            45 666665  8899999999975  4677777654

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]

Probab=95.65  E-value=0.23  Score=47.86  Aligned_cols=123  Identities=14%  Similarity=0.162  Sum_probs=78.5

Q ss_pred             HHhCCCCCC---------------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeE
Q psy17636         91 AALSGRDII---------------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQ  155 (222)
Q Consensus        91 ~il~g~dvi---------------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q  155 (222)
                      ..|+|-++|               ..-+.+++...+++-.+++.|||+..+  +++ .++.++-.+.+....  - -|+-
T Consensus       158 ~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~--rfs-~~f~~apvi~i~GR~--f-PVei  231 (845)
T COG1643         158 PLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAE--RFS-AYFGNAPVIEIEGRT--Y-PVEI  231 (845)
T ss_pred             cccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHH--HHH-HHcCCCCEEEecCCc--c-ceEE
Confidence            356777766               566777777777788999999999643  454 455655445554332  1 2455


Q ss_pred             EEEEcCC-Cch-HHHHHHHHHhhC--CCCeEEEEecccHH--HH-HHhHH----CCceEEEecCCCCCChHHHhh
Q psy17636        156 VVINLPQ-TQK-LTWLTHNLVEFL--STGSLLIFVTKKCF--EL-VNLIA----KNYWLIQAVGILMCPKSPSRL  219 (222)
Q Consensus       156 ~~~~~~~-~~K-~~~L~~~l~~~~--~~~~~IVF~nt~~~--~l-~~L~~----~g~~~~~lHg~~~q~~R~~~L  219 (222)
                      +|..... .++ ...+...+....  ..|.++||.+-..+  .+ ..|.+    ....+..|||.|+.++-.+.+
T Consensus       232 ~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF  306 (845)
T COG1643         232 RYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVF  306 (845)
T ss_pred             EecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhc
Confidence            5533332 332 223333333222  45899999998877  66 77776    458899999999988766654

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=95.40  E-value=0.021  Score=56.04  Aligned_cols=62  Identities=16%  Similarity=0.166  Sum_probs=49.3

Q ss_pred             CCCchHHHHHHHHHhhC-CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        161 PQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       161 ~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ....|+..|..+|.... ...++|||+.....  .| .+|...|++...|||+++..+|..++..|
T Consensus       468 e~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~F  533 (1033)
T PLN03142        468 ENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAF  533 (1033)
T ss_pred             hhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHh
Confidence            34578877766665543 34699999986655  67 89999999999999999999999988765

>KOG0950|consensus

Probab=95.12  E-value=0.1  Score=50.13  Aligned_cols=36  Identities=17%  Similarity=0.078  Sum_probs=27.4

Q ss_pred             CCCHHHHHHHHHCCCCCCCHHHHhHH--HHHhCCCCCC
Q psy17636         64 GFDEVLMKALRKCEYTSPTPIQAQAV--PAALSGRDII   99 (222)
Q Consensus        64 ~l~~~l~~~l~~~g~~~pTpIQ~~~i--p~il~g~dvi   99 (222)
                      +++....-..+..|.......|..|+  |.+++|+++|
T Consensus       207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nli  244 (1008)
T KOG0950|consen  207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLI  244 (1008)
T ss_pred             CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceE
Confidence            33444444556679999999999986  7788999998

>TIGR00603 rad25 DNA repair helicase rad25

Probab=94.69  E-value=0.033  Score=52.68  Aligned_cols=55  Identities=11%  Similarity=0.012  Sum_probs=38.1

Q ss_pred             CchHHHHHHHHHhh-CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        163 TQKLTWLTHNLVEF-LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       163 ~~K~~~L~~~l~~~-~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ..|...+..++... ....++||||++...  .+ ..|   |  +..+||++++.+|...|..|
T Consensus       479 p~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~~F  537 (732)
T TIGR00603       479 PNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQNF  537 (732)
T ss_pred             hHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHHHH
Confidence            34555554444322 245699999988755  55 555   3  46699999999999998765

All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

Probab=94.44  E-value=0.14  Score=46.49  Aligned_cols=102  Identities=12%  Similarity=-0.013  Sum_probs=63.1

Q ss_pred             CCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhh-CCCCeEEEEecccHH
Q psy17636        113 NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEF-LSTGSLLIFVTKKCF  191 (222)
Q Consensus       113 ~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~~~IVF~nt~~~  191 (222)
                      ..|++..|||=.+.-.+.+.   ++-+.--+.+.+...+    .+.+-+.....+-|+.-+... ..+.+++|=+-|++-
T Consensus       386 ~~q~i~VSATPg~~E~e~s~---~~vveQiIRPTGLlDP----~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm  458 (663)
T COG0556         386 IPQTIYVSATPGDYELEQSG---GNVVEQIIRPTGLLDP----EIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM  458 (663)
T ss_pred             cCCEEEEECCCChHHHHhcc---CceeEEeecCCCCCCC----ceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence            36999999996443222211   0111111222222222    222233334444455656553 345799999988754


Q ss_pred             --HH-HHhHHCCceEEEecCCCCCChHHHhhcC
Q psy17636        192 --EL-VNLIAKNYWLIQAVGILMCPKSPSRLSL  221 (222)
Q Consensus       192 --~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~  221 (222)
                        .| .+|...|+++..+|++..--+|...+.+
T Consensus       459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIird  491 (663)
T COG0556         459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRD  491 (663)
T ss_pred             HHHHHHHHHhcCceEEeeeccchHHHHHHHHHH
Confidence              89 9999999999999999999999887754

>smart00487 DEXDc DEAD-like helicases superfamily

Probab=94.14  E-value=0.28  Score=37.47  Aligned_cols=46  Identities=35%  Similarity=0.371  Sum_probs=37.6

Q ss_pred             HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCC
Q psy17636        100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGD  145 (222)
Q Consensus       100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~  145 (222)
                      ...+..++..+++..+.+++|||.++.+...+..++.+.+.+....
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~  192 (201)
T smart00487      147 GDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP  192 (201)
T ss_pred             HHHHHHHHHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence            3566667777777899999999999999999999999888776654

>KOG0952|consensus

Probab=94.13  E-value=0.41  Score=46.73  Aligned_cols=96  Identities=22%  Similarity=0.225  Sum_probs=49.6

Q ss_pred             HHHHHHHHhhCC-------CCCeEEEEccccchHHHHHHHHhcC-CC-cEEEeCCCCCCCCCeeEEEEEcCCC---chHH
Q psy17636        100 EPQVRSICDHVR-------PNRQTLLFSATFKKRIEKLARDVLT-DP-IKIVQGDIGEANTDITQVVINLPQT---QKLT  167 (222)
Q Consensus       100 ~~~l~~Il~~~~-------~~~Q~~lfSAT~~~~v~~l~~~~l~-~p-~~i~v~~~~~~~~~i~q~~~~~~~~---~K~~  167 (222)
                      ++.++.|+..+.       ....++.+|||+|.- +.+|. |++ || .-+.--...--+-.++|.++-++..   .+..
T Consensus       255 GpvlEtiVaRtlr~vessqs~IRivgLSATlPN~-eDvA~-fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~  332 (1230)
T KOG0952|consen  255 GPVLETIVARTLRLVESSQSMIRIVGLSATLPNY-EDVAR-FLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKK  332 (1230)
T ss_pred             cchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHH-HhcCCCccceeeecccccccceeeeEEeeecccchhhhh
Confidence            455555554432       345789999999864 45543 444 32 1111111112244577777766543   1111


Q ss_pred             H----HHHHHHh-hCCCCeEEEEecccHH--HH-HHhH
Q psy17636        168 W----LTHNLVE-FLSTGSLLIFVTKKCF--EL-VNLI  197 (222)
Q Consensus       168 ~----L~~~l~~-~~~~~~~IVF~nt~~~--~l-~~L~  197 (222)
                      .    .+..+.+ .....+++|||.++.+  .. +.|.
T Consensus       333 ~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~  370 (1230)
T KOG0952|consen  333 NIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLR  370 (1230)
T ss_pred             hHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHH
Confidence            1    1111222 2245699999999866  44 4443

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins

Probab=94.06  E-value=0.019  Score=38.02  Aligned_cols=29  Identities=14%  Similarity=-0.069  Sum_probs=25.8

Q ss_pred             HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        194 VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       194 ~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ++|+..|+++..+||+|++.+|...+..|
T Consensus         1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f   29 (78)
T PF00271_consen    1 KFLEKKGIKVAIIHGDMSQKERQEILKKF   29 (78)
T ss_dssp             HHHHHTTSSEEEESTTSHHHHHHHHHHHH
T ss_pred             CChHHCCCcEEEEECCCCHHHHHHHHHHh
Confidence            46889999999999999999999988654

It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....

>KOG0390|consensus

Probab=93.06  E-value=0.2  Score=47.52  Aligned_cols=58  Identities=16%  Similarity=0.055  Sum_probs=39.7

Q ss_pred             CchHHHHHHHHHhhCCCCeEEEEe----cccHH-HH--HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        163 TQKLTWLTHNLVEFLSTGSLLIFV----TKKCF-EL--VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       163 ~~K~~~L~~~l~~~~~~~~~IVF~----nt~~~-~l--~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ..|+..|..+|...  ..++.+|+    |-+.. .+  ...+-.|+.+..|||+|++.||.+...-|
T Consensus       577 s~kl~~L~~ll~~~--~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~F  641 (776)
T KOG0390|consen  577 SGKLLVLVFLLEVI--REKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTF  641 (776)
T ss_pred             hhHHHHHHHHHHHH--hhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhc
Confidence            45666665555333  34666666    34444 44  55566699999999999999999877654

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]

Probab=92.98  E-value=0.18  Score=45.30  Aligned_cols=60  Identities=15%  Similarity=0.062  Sum_probs=45.1

Q ss_pred             CchHHHHHHHHHhhC---CCCeEEEEecccHH--HH-HHhHHCCceEE-Eec--------CCCCCChHHHhhcCC
Q psy17636        163 TQKLTWLTHNLVEFL---STGSLLIFVTKKCF--EL-VNLIAKNYWLI-QAV--------GILMCPKSPSRLSLV  222 (222)
Q Consensus       163 ~~K~~~L~~~l~~~~---~~~~~IVF~nt~~~--~l-~~L~~~g~~~~-~lH--------g~~~q~~R~~~L~~~  222 (222)
                      +-|+..|.+++.+..   +..++|||++.|.+  .+ .+|...|.++. .+-        .||+|.+-...+..|
T Consensus       347 HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~F  421 (542)
T COG1111         347 HPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQF  421 (542)
T ss_pred             CccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHH
Confidence            668888888777665   33699999999977  77 99999998874 332        469888877666544

>smart00490 HELICc helicase superfamily c-terminal domain

Probab=92.92  E-value=0.071  Score=34.93  Aligned_cols=30  Identities=17%  Similarity=-0.034  Sum_probs=26.0

Q ss_pred             H-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        193 L-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       193 l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      + ..|...|+.+..+||+|+.++|...+..|
T Consensus         3 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f   33 (82)
T smart00490        3 LAELLKELGIKVARLHGGLSQEEREEILEKF   33 (82)
T ss_pred             HHHHHHHCCCeEEEEECCCCHHHHHHHHHHH
Confidence            5 67888899999999999999999887654

>KOG0922|consensus

Probab=92.15  E-value=2.5  Score=39.44  Aligned_cols=113  Identities=13%  Similarity=0.139  Sum_probs=64.8

Q ss_pred             HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchH-HHHHHH--HHhh
Q psy17636        100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKL-TWLTHN--LVEF  176 (222)
Q Consensus       100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~-~~L~~~--l~~~  176 (222)
                      ..-+++|++. +++-.+++.|||+..   +....|+.+.-.+.+.....   -|+..|..-+..+=. +.+...  +...
T Consensus       183 lGlLKki~~~-R~~LklIimSATlda---~kfS~yF~~a~i~~i~GR~f---PVei~y~~~p~~dYv~a~~~tv~~Ih~~  255 (674)
T KOG0922|consen  183 LGLLKKILKK-RPDLKLIIMSATLDA---EKFSEYFNNAPILTIPGRTF---PVEILYLKEPTADYVDAALITVIQIHLT  255 (674)
T ss_pred             HHHHHHHHhc-CCCceEEEEeeeecH---HHHHHHhcCCceEeecCCCC---ceeEEeccCCchhhHHHHHHHHHHHHcc
Confidence            4555555554 446789999999973   33455677655556654322   244444443332211 122111  2222


Q ss_pred             CCCCeEEEEecccHH--HH-HHhHHC----Cce----EEEecCCCCCChHHHhh
Q psy17636        177 LSTGSLLIFVTKKCF--EL-VNLIAK----NYW----LIQAVGILMCPKSPSRL  219 (222)
Q Consensus       177 ~~~~~~IVF~nt~~~--~l-~~L~~~----g~~----~~~lHg~~~q~~R~~~L  219 (222)
                      .+++-++||.+...+  .+ +.|.+.    +-.    ...+||.|+.++-.+.+
T Consensus       256 E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF  309 (674)
T KOG0922|consen  256 EPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVF  309 (674)
T ss_pred             CCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccc
Confidence            456789999998876  44 444432    222    46799999998866554

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]

Probab=92.12  E-value=0.27  Score=47.79  Aligned_cols=90  Identities=19%  Similarity=0.065  Sum_probs=60.8

Q ss_pred             CCCeEEEEccccchH-HHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEeccc-
Q psy17636        112 PNRQTLLFSATFKKR-IEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKK-  189 (222)
Q Consensus       112 ~~~Q~~lfSAT~~~~-v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~-  189 (222)
                      +..+.+.-|||..+. .+-..-   ++-.-+.++.......||...|+..+..+|..   +++...  ..-+|||+... 
T Consensus       275 k~g~LvvsSATg~~rg~R~~Lf---ReLlgFevG~~~~~LRNIvD~y~~~~~~e~~~---elvk~l--G~GgLIfV~~d~  346 (1187)
T COG1110         275 KLGILVVSSATGKPRGSRLKLF---RELLGFEVGSGGEGLRNIVDIYVESESLEKVV---ELVKKL--GDGGLIFVPIDY  346 (1187)
T ss_pred             CCceEEEeeccCCCCCchHHHH---HHHhCCccCccchhhhheeeeeccCccHHHHH---HHHHHh--CCCeEEEEEcHH
Confidence            457899999999543 322222   22222355666667788988888775555554   434443  24789999983 


Q ss_pred             --H--HHH-HHhHHCCceEEEecCC
Q psy17636        190 --C--FEL-VNLIAKNYWLIQAVGI  209 (222)
Q Consensus       190 --~--~~l-~~L~~~g~~~~~lHg~  209 (222)
                        .  +++ ++|+.+|+++..+|+.
T Consensus       347 G~e~aeel~e~Lr~~Gi~a~~~~a~  371 (1187)
T COG1110         347 GREKAEELAEYLRSHGINAELIHAE  371 (1187)
T ss_pred             hHHHHHHHHHHHHhcCceEEEeecc
Confidence              2  289 9999999999999984

>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily

Probab=91.41  E-value=0.57  Score=31.83  Aligned_cols=35  Identities=6%  Similarity=-0.016  Sum_probs=27.4

Q ss_pred             CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCC
Q psy17636        177 LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILM  211 (222)
Q Consensus       177 ~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~  211 (222)
                      .+..++++||++-..  .. ..|+..|+++..|.|+++
T Consensus        49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~   86 (90)
T cd01524          49 PKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK   86 (90)
T ss_pred             CCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence            334689999986433  55 888999999999999985

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.

>PRK12903 secA preprotein translocase subunit SecA; Reviewed

Probab=91.15  E-value=0.82  Score=44.14  Aligned_cols=98  Identities=10%  Similarity=-0.115  Sum_probs=63.4

Q ss_pred             eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCee-EEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH-
Q psy17636        115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDIT-QVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF-  191 (222)
Q Consensus       115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~-q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~-  191 (222)
                      ....+|.|...+-.++...|--+.+  .+.+. ....... .-.++....+|+..+...+.+.. ...|+||.|.|... 
T Consensus       363 kLsGMTGTA~te~~Ef~~iY~l~Vv--~IPTn-kP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~S  439 (925)
T PRK12903        363 KLSGMTGTAKTEEQEFIDIYNMRVN--VVPTN-KPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDS  439 (925)
T ss_pred             hhhccCCCCHHHHHHHHHHhCCCEE--ECCCC-CCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHH
Confidence            4556778876666666655533333  33222 1111111 12456667889988888777654 34599999999866 


Q ss_pred             -HH-HHhHHCCceEEEecCCCCCChHHH
Q psy17636        192 -EL-VNLIAKNYWLIQAVGILMCPKSPS  217 (222)
Q Consensus       192 -~l-~~L~~~g~~~~~lHg~~~q~~R~~  217 (222)
                       .+ ..|...|++...|++.  +.+|+.
T Consensus       440 E~ls~~L~~~gi~h~vLNAk--~~e~EA  465 (925)
T PRK12903        440 ETLHELLLEANIPHTVLNAK--QNAREA  465 (925)
T ss_pred             HHHHHHHHHCCCCceeeccc--chhhHH
Confidence             77 9999999999999885  445554

>KOG1002|consensus

Probab=90.60  E-value=0.2  Score=45.21  Aligned_cols=60  Identities=13%  Similarity=0.153  Sum_probs=45.0

Q ss_pred             CchHHHHHHHHHhh---CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        163 TQKLTWLTHNLVEF---LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       163 ~~K~~~L~~~l~~~---~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      +.|.++|.+-|...   ...-+.|||..-..-  -+ -.|.+.|++|+-|-|+|+..+|..++..|
T Consensus       619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F  684 (791)
T KOG1002|consen  619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYF  684 (791)
T ss_pred             hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHh
Confidence            56777776655433   223489999753322  55 78999999999999999999999988654

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]

Probab=90.44  E-value=2.3  Score=42.20  Aligned_cols=130  Identities=17%  Similarity=0.143  Sum_probs=85.4

Q ss_pred             HHHHhHHHHHhCCC-CCC-------------------------------HHHHHHHHhhCCCCCeEEEEccccchHHHHH
Q psy17636         83 PIQAQAVPAALSGR-DII-------------------------------EPQVRSICDHVRPNRQTLLFSATFKKRIEKL  130 (222)
Q Consensus        83 pIQ~~~ip~il~g~-dvi-------------------------------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l  130 (222)
                      .-|.+++..+-+|+ |+|                               .+.+++    ++.+.-++-+|||==+..-.+
T Consensus       684 kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGVk~KEkLK~----Lr~~VDvLTLSATPIPRTL~M  759 (1139)
T COG1197         684 KEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVKHKEKLKE----LRANVDVLTLSATPIPRTLNM  759 (1139)
T ss_pred             HHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEEechhhcCccHHHHHHH----HhccCcEEEeeCCCCcchHHH
Confidence            35677777788887 777                               444444    456677999999975666677


Q ss_pred             HHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHH-HHhhCCCCeEEEEecccHH--HH-HHhHHC--CceEE
Q psy17636        131 ARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHN-LVEFLSTGSLLIFVTKKCF--EL-VNLIAK--NYWLI  204 (222)
Q Consensus       131 ~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~-l~~~~~~~~~IVF~nt~~~--~l-~~L~~~--g~~~~  204 (222)
                      +-.-+++--.|...+.+..  .|+-++.  +.++..  +.+. +.+....|++..-+|..++  .+ ..|+..  ..+++
T Consensus       760 sm~GiRdlSvI~TPP~~R~--pV~T~V~--~~d~~~--ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~  833 (1139)
T COG1197         760 SLSGIRDLSVIATPPEDRL--PVKTFVS--EYDDLL--IREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIA  833 (1139)
T ss_pred             HHhcchhhhhccCCCCCCc--ceEEEEe--cCChHH--HHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEE
Confidence            7777788777765544322  2333322  222221  2222 3344456788777788877  77 888776  67899


Q ss_pred             EecCCCCCChHHHhhcCC
Q psy17636        205 QAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       205 ~lHg~~~q~~R~~~L~~~  222 (222)
                      ..||.|+..+=++.+..|
T Consensus       834 vaHGQM~e~eLE~vM~~F  851 (1139)
T COG1197         834 VAHGQMRERELEEVMLDF  851 (1139)
T ss_pred             EeecCCCHHHHHHHHHHH
Confidence            999999999888877655

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]

Probab=89.82  E-value=0.49  Score=42.43  Aligned_cols=43  Identities=16%  Similarity=0.114  Sum_probs=37.7

Q ss_pred             CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        179 TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       179 ~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ..+++|||.+...  .+ ..+...|+ +..+.|+.++.+|+..++.|
T Consensus       283 ~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~f  328 (442)
T COG1061         283 GDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERF  328 (442)
T ss_pred             CCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHH
Confidence            4699999988866  78 88888888 99999999999999998765

>PRK12326 preprotein translocase subunit SecA; Reviewed

Probab=89.80  E-value=1.7  Score=41.32  Aligned_cols=93  Identities=12%  Similarity=-0.076  Sum_probs=62.3

Q ss_pred             eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--
Q psy17636        115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--  191 (222)
Q Consensus       115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--  191 (222)
                      ....+|.|.....+++...|--+  .+.+.+.......-....++....+|+..+...+.+.. ...|+||.|.|...  
T Consensus       364 kLsGMTGTa~t~~~Ef~~iY~l~--Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE  441 (764)
T PRK12326        364 TVCGMTGTAVAAGEQLRQFYDLG--VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESE  441 (764)
T ss_pred             hheeecCCChhHHHHHHHHhCCc--EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHH
Confidence            46788899877777776666434  23333221111111123455566788888877776654 34599999999876  


Q ss_pred             HH-HHhHHCCceEEEecCC
Q psy17636        192 EL-VNLIAKNYWLIQAVGI  209 (222)
Q Consensus       192 ~l-~~L~~~g~~~~~lHg~  209 (222)
                      .+ ..|.+.|++...|++.
T Consensus       442 ~ls~~L~~~gI~h~vLNAk  460 (764)
T PRK12326        442 ELAERLRAAGVPAVVLNAK  460 (764)
T ss_pred             HHHHHHHhCCCcceeeccC
Confidence            77 9999999999999886

>KOG4150|consensus

Probab=89.52  E-value=8.1  Score=35.89  Aligned_cols=152  Identities=16%  Similarity=0.110  Sum_probs=95.9

Q ss_pred             CCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------HHHHHHHHhhC-----CC
Q psy17636         64 GFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------------------------EPQVRSICDHV-----RP  112 (222)
Q Consensus        64 ~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------------------------~~~l~~Il~~~-----~~  112 (222)
                      ++.+.--+++.+.|-.....-|..++..+|...-..                          .++++.+++.+     ..
T Consensus       371 ~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~  450 (1034)
T KOG4150|consen  371 KLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASI  450 (1034)
T ss_pred             CCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhc
Confidence            577778888998887777777888887777553222                          56666666655     34


Q ss_pred             CCeEEEEccccchHHHHHHHHhcC-CCcEEEeCCCCCCCCCeeEEEEEcCC------CchHH---HHHHHHHhh-CCCCe
Q psy17636        113 NRQTLLFSATFKKRIEKLARDVLT-DPIKIVQGDIGEANTDITQVVINLPQ------TQKLT---WLTHNLVEF-LSTGS  181 (222)
Q Consensus       113 ~~Q~~lfSAT~~~~v~~l~~~~l~-~p~~i~v~~~~~~~~~i~q~~~~~~~------~~K~~---~L~~~l~~~-~~~~~  181 (222)
                      +-|++-.|||+-+.++-+...+-- +...|...   ..+..-++.+++-++      ++|..   ....++.+. ...-+
T Consensus       451 ~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~D---GSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R  527 (1034)
T KOG4150|consen  451 NMGVYDGDTPYKDRTRLRSELANLSELELVTID---GSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLR  527 (1034)
T ss_pred             CcceEeCCCCcCCHHHHHHHhcCCcceEEEEec---CCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCc
Confidence            789999999999888877666533 33344332   345566777777653      12222   222222222 23459


Q ss_pred             EEEEecccHH-H-----H-HHhHHCCc----eEEEecCCCCCChHHHh
Q psy17636        182 LLIFVTKKCF-E-----L-VNLIAKNY----WLIQAVGILMCPKSPSR  218 (222)
Q Consensus       182 ~IVF~nt~~~-~-----l-~~L~~~g~----~~~~lHg~~~q~~R~~~  218 (222)
                      +|-||.+|.- +     . +.|..-|-    .+.++.|+-+.++|-+.
T Consensus       528 ~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKI  575 (1034)
T KOG4150|consen  528 CIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKI  575 (1034)
T ss_pred             EEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHH
Confidence            9999987743 2     2 33333332    45677888888888664

>PRK12899 secA preprotein translocase subunit SecA; Reviewed

Probab=87.90  E-value=0.3  Score=47.39  Aligned_cols=71  Identities=17%  Similarity=0.185  Sum_probs=48.7

Q ss_pred             hhhhcCCHHHHHHHHHHcCCEE-ecCCCCCCCCCcCCCCCCHHHHHHHH-----HCCCCCC---CHHHHhHHHHHhCCCC
Q psy17636         27 EDIARLTPQEAQELRAKSGITV-SGADPPYPVSSFGHFGFDEVLMKALR-----KCEYTSP---TPIQAQAVPAALSGRD   97 (222)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~i~v-~g~~~p~~~~~f~~l~l~~~l~~~l~-----~~g~~~p---TpIQ~~~ip~il~g~d   97 (222)
                      ..+.++++++.......+.-.+ .|......  --+.|++..++...+.     .+||..|   ||+|.++||.++.|+|
T Consensus        32 ~~~~~lsd~eL~~kt~~~k~~l~~~~~ld~~--l~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~g  109 (970)
T PRK12899         32 EKFSSLSDDELRNKTAELKQRYQDGESLDKL--LPEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKG  109 (970)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHcCCchHHH--HHHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCC
Confidence            4567788876654333321111 23221111  1255789999998887     6899999   9999999999999999


Q ss_pred             CC
Q psy17636         98 II   99 (222)
Q Consensus        98 vi   99 (222)
                      ++
T Consensus       110 vI  111 (970)
T PRK12899        110 FI  111 (970)
T ss_pred             eE
Confidence            99

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]

Probab=86.53  E-value=4.9  Score=34.93  Aligned_cols=96  Identities=13%  Similarity=-0.022  Sum_probs=56.3

Q ss_pred             CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHH-------HHHHHHHhhCC-CCeEE
Q psy17636        112 PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLT-------WLTHNLVEFLS-TGSLL  183 (222)
Q Consensus       112 ~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~-------~L~~~l~~~~~-~~~~I  183 (222)
                      +..-++.+|||-|++++.-+..-  +-..+.+...-.-.+-..-.++++.+-.|..       .|...|.+..+ ..+++
T Consensus       232 ~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~l  309 (441)
T COG4098         232 KEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVL  309 (441)
T ss_pred             ccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEE
Confidence            45678999999987765533221  3333333333222222334566666533322       46677766543 35999


Q ss_pred             EEecccHH--HH-HHhH-HCCc-eEEEecCC
Q psy17636        184 IFVTKKCF--EL-VNLI-AKNY-WLIQAVGI  209 (222)
Q Consensus       184 VF~nt~~~--~l-~~L~-~~g~-~~~~lHg~  209 (222)
                      ||+++...  .+ ..|+ ..+. ..++.|+.
T Consensus       310 iF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~  340 (441)
T COG4098         310 IFFPEIETMEQVAAALKKKLPKETIASVHSE  340 (441)
T ss_pred             EEecchHHHHHHHHHHHhhCCccceeeeecc
Confidence            99999865  77 7773 3344 44778874

>PRK12902 secA preprotein translocase subunit SecA; Reviewed

Probab=84.73  E-value=3.8  Score=39.85  Aligned_cols=101  Identities=9%  Similarity=-0.113  Sum_probs=64.7

Q ss_pred             eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--
Q psy17636        115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--  191 (222)
Q Consensus       115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--  191 (222)
                      ....+|.|.-.+-.++...|--+.+  .+.+.......-..-.++....+|+..+.+.+.+.. ...|++|-|.|...  
T Consensus       376 kLsGMTGTa~te~~Ef~~iY~l~Vv--~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE  453 (939)
T PRK12902        376 KLAGMTGTAKTEEVEFEKTYKLEVT--VIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSE  453 (939)
T ss_pred             hhcccCCCCHHHHHHHHHHhCCcEE--EcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHH
Confidence            4567788876666666666533333  333221111111123445556789988887777654 34599999999866  


Q ss_pred             HH-HHhHHCCceEEEecCCCCCChHHH
Q psy17636        192 EL-VNLIAKNYWLIQAVGILMCPKSPS  217 (222)
Q Consensus       192 ~l-~~L~~~g~~~~~lHg~~~q~~R~~  217 (222)
                      .+ ..|...|++...|+..-.+.+||.
T Consensus       454 ~ls~~L~~~gi~h~vLNAk~~~~~~EA  480 (939)
T PRK12902        454 LLSALLQEQGIPHNLLNAKPENVEREA  480 (939)
T ss_pred             HHHHHHHHcCCchheeeCCCcchHhHH
Confidence            77 999999999999988644445554

>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily

Probab=84.28  E-value=2  Score=29.61  Aligned_cols=35  Identities=11%  Similarity=0.078  Sum_probs=27.9

Q ss_pred             CCCeEEEEeccc--HHHH-HHhHHCCceEEEecCCCCC
Q psy17636        178 STGSLLIFVTKK--CFEL-VNLIAKNYWLIQAVGILMC  212 (222)
Q Consensus       178 ~~~~~IVF~nt~--~~~l-~~L~~~g~~~~~lHg~~~q  212 (222)
                      ...+++|+|.+-  .... ..|...|+.+..|.|++..
T Consensus        60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~~   97 (100)
T cd01523          60 DDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMKA   97 (100)
T ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHHh
Confidence            446899999864  3366 9999999999999999853

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative

Probab=84.21  E-value=5.7  Score=38.75  Aligned_cols=41  Identities=10%  Similarity=0.045  Sum_probs=26.2

Q ss_pred             CCCeEEEEecccHH--HH-HHhHH----CCceEEEecCCCCCChHHHhhcC
Q psy17636        178 STGSLLIFVTKKCF--EL-VNLIA----KNYWLIQAVGILMCPKSPSRLSL  221 (222)
Q Consensus       178 ~~~~~IVF~nt~~~--~l-~~L~~----~g~~~~~lHg~~~q~~R~~~L~~  221 (222)
                      .+++++|||+|...  .+ ..|..    .++.+..  .++. ..|.+.+..
T Consensus       673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~--q~~~-~~r~~ll~~  720 (850)
T TIGR01407       673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLA--QGIN-GSRAKIKKR  720 (850)
T ss_pred             cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEe--cCCC-ccHHHHHHH
Confidence            35799999999876  66 77764    3555433  3333 467766554

This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.

>KOG0948|consensus

Probab=83.66  E-value=4.3  Score=38.78  Aligned_cols=43  Identities=21%  Similarity=0.246  Sum_probs=26.2

Q ss_pred             CCCCeEEEEccccchHHHHHHHHh---cCCCcEEEeCCCCCCCCCeeEE
Q psy17636        111 RPNRQTLLFSATFKKRIEKLARDV---LTDPIKIVQGDIGEANTDITQV  156 (222)
Q Consensus       111 ~~~~Q~~lfSAT~~~~v~~l~~~~---l~~p~~i~v~~~~~~~~~i~q~  156 (222)
                      |++...+++|||+|... ++|.-.   -+.|..|.-.+-.  +.-++|+
T Consensus       264 P~~vr~VFLSATiPNA~-qFAeWI~~ihkQPcHVVYTdyR--PTPLQHy  309 (1041)
T KOG0948|consen  264 PDNVRFVFLSATIPNAR-QFAEWICHIHKQPCHVVYTDYR--PTPLQHY  309 (1041)
T ss_pred             cccceEEEEeccCCCHH-HHHHHHHHHhcCCceEEeecCC--CCcceee
Confidence            56778899999999774 444433   2467665443332  2335555

>KOG0354|consensus

Probab=83.23  E-value=1.8  Score=41.08  Aligned_cols=60  Identities=22%  Similarity=0.150  Sum_probs=40.2

Q ss_pred             CchHHHHHHHHHhhC---CCCeEEEEecccHH--HH-HHhH---HCCceEEEecC--------CCCCChHHHhhcCC
Q psy17636        163 TQKLTWLTHNLVEFL---STGSLLIFVTKKCF--EL-VNLI---AKNYWLIQAVG--------ILMCPKSPSRLSLV  222 (222)
Q Consensus       163 ~~K~~~L~~~l~~~~---~~~~~IVF~nt~~~--~l-~~L~---~~g~~~~~lHg--------~~~q~~R~~~L~~~  222 (222)
                      +.|...|.+.|.+..   +..++||||.+|..  .| .+|.   ..|+++..+-|        +|+|++--..|..|
T Consensus       394 npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~F  470 (746)
T KOG0354|consen  394 NPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKF  470 (746)
T ss_pred             ChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHH
Confidence            678887877776553   34699999999966  66 6665   34555555444        67777766666544

>CHL00122 secA preprotein translocase subunit SecA; Validated

Probab=83.18  E-value=6  Score=38.41  Aligned_cols=99  Identities=9%  Similarity=-0.120  Sum_probs=62.3

Q ss_pred             eEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeE-EEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH-
Q psy17636        115 QTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQ-VVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF-  191 (222)
Q Consensus       115 Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q-~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~-  191 (222)
                      ....+|.|...+-.++...|--+.  +.+.+. ........ ..++....+|+..+...+.... ...|++|-|.|.+. 
T Consensus       361 kL~GMTGTa~te~~Ef~~iY~l~v--v~IPtn-kp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~S  437 (870)
T CHL00122        361 KLSGMTGTAKTEELEFEKIYNLEV--VCIPTH-RPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKS  437 (870)
T ss_pred             hhcccCCCCHHHHHHHHHHhCCCE--EECCCC-CCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHH
Confidence            355677887665556655552232  233322 22222222 3455566788888777665554 34599999999876 


Q ss_pred             -HH-HHhHHCCceEEEecCCCCCChHH
Q psy17636        192 -EL-VNLIAKNYWLIQAVGILMCPKSP  216 (222)
Q Consensus       192 -~l-~~L~~~g~~~~~lHg~~~q~~R~  216 (222)
                       .+ ..|...|++...|++.-.+.+||
T Consensus       438 E~ls~~L~~~gi~h~vLNAk~~~~~~E  464 (870)
T CHL00122        438 ELLSQLLKEYRLPHQLLNAKPENVRRE  464 (870)
T ss_pred             HHHHHHHHHcCCccceeeCCCccchhH
Confidence             77 99999999999999864333444

>KOG0947|consensus

Probab=82.60  E-value=2.5  Score=41.21  Aligned_cols=22  Identities=14%  Similarity=0.243  Sum_probs=18.7

Q ss_pred             CCCCCCHHHHhHHHHHhCCCCCC
Q psy17636         77 EYTSPTPIQAQAVPAALSGRDII   99 (222)
Q Consensus        77 g~~~pTpIQ~~~ip~il~g~dvi   99 (222)
                      +| +|-+.|++||-++..|..|+
T Consensus       295 pF-elD~FQk~Ai~~lerg~SVF  316 (1248)
T KOG0947|consen  295 PF-ELDTFQKEAIYHLERGDSVF  316 (1248)
T ss_pred             CC-CccHHHHHHHHHHHcCCeEE
Confidence            44 57779999999999998887

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]

Probab=82.32  E-value=6.6  Score=38.93  Aligned_cols=27  Identities=19%  Similarity=0.421  Sum_probs=22.0

Q ss_pred             HHHHCCCCCCCHHHHhHHHHHhCCCCCC
Q psy17636         72 ALRKCEYTSPTPIQAQAVPAALSGRDII   99 (222)
Q Consensus        72 ~l~~~g~~~pTpIQ~~~ip~il~g~dvi   99 (222)
                      .....|| .|=|.|++|+-++..|..|+
T Consensus       112 ~~~~~~F-~LD~fQ~~a~~~Ler~esVl  138 (1041)
T COG4581         112 PAREYPF-ELDPFQQEAIAILERGESVL  138 (1041)
T ss_pred             HHHhCCC-CcCHHHHHHHHHHhCCCcEE
Confidence            3445576 67789999999999999988

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	222
4a4d_A	253	Crystal Structure Of The N-Terminal Domain Of The H		2e-13
4a4d_A	253	Crystal Structure Of The N-Terminal Domain Of The H		2e-07
2i4i_A	417	Crystal Structure Of Human Dead-Box Rna Helicase Dd		6e-08
3fe2_A	242	Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D		2e-07
2db3_A	434	Structural Basis For Rna Unwinding By The Dead-Box		2e-06
1wrb_A	253	Crystal Structure Of The N-Terminal Reca-Like Domai		3e-06
3dkp_A	245	Human Dead-Box Rna-Helicase Ddx52, Conserved Domain		6e-05
3iuy_A	228	Crystal Structure Of Ddx53 Dead-Box Domain Length =		5e-04
3ber_A	249	Human Dead-Box Rna-Helicase Ddx47, Conserved Domain		5e-04

>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 48/83 (57%)
Query: 17 EVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKC 76
          + EKNFYQ H D+AR T QE +  R    ITV G + P PV +F    F   +M  + + 
Sbjct: 2  KFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQ 61
Query: 77 EYTSPTPIQAQAVPAALSGRDII 99
           +T PT IQAQ  P ALSG D++
Sbjct: 62 NFTEPTAIQAQGWPVALSGLDMV 84

>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 99  IEPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQG 144
            EPQ+R I D +RP+RQTL++SAT+ K + +LA D L D I I  G
Sbjct: 207 FEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 252

>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 6/96 (6%)
Query: 99  IEPQVRSIC--DHVRPN--RQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDIT 154
            EPQ+R I   D + P   R T++FSATF K I+ LARD L + I +  G +G  + +IT
Sbjct: 192 FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENIT 251
Query: 155 QVVINLPQTQKLTWLTHNLVEFLSTGSL-LIFVTKK 189
           Q V+ + ++ K ++L  +L+      SL L+FV  K
Sbjct: 252 QKVVWVEESDKRSFLL-DLLNATGKDSLTLVFVETK 286

>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQG 144
           EPQ+R I D +RP+RQTL++SAT+ K + +LA D L D I I  G
Sbjct: 194 EPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238

>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 103 VRSICDHV--RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINL 160
           +R I  HV  RP  QTL+FSATF + I+++A + L + + +  G +G A +D+ Q +  +
Sbjct: 224 MRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEV 283
Query: 161 PQTQKLTWLTHNLVEFLSTGSLLIFVTKK 189
            +  K + L   L E  + G+++   TK+
Sbjct: 284 NKYAKRSKLIEILSE-QADGTIVFVETKR 311

>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of Djvlgb, A Pranarian Vasa-Like Rna Helicase Length = 253

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 100 EPQVRSICDHVRP----NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQ 155
           EPQ+R I +        NRQTL+FSATF K I+KLA D L + I +  G +G  +  I Q
Sbjct: 192 EPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQ 251
Query: 156 VV 157
            +
Sbjct: 252 EI 253

>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In Complex With Adp Length = 245

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 40 LRAKSGITVSGADPPYPVSSFGH----FGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG 95
          LR K  I V G D P P+++F      +  +  L++ +    +  PTPIQ QA+P  L G
Sbjct: 7  LRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHG 66
Query: 96 RDII 99
          R+++
Sbjct: 67 RELL 70

>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain Length = 228

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPI 139
           EPQ+R I   VRP+RQT++ SAT+   + +LA   L DP+
Sbjct: 185 EPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPM 224

>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 59 SFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          +F   G  +VL +A  +  +T PT IQ +A+P AL GRDII
Sbjct: 44 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDII 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	222
2db3_A	434	ATP-dependent RNA helicase VASA; DEAD-BOX, protein	2e-29
2db3_A	434	ATP-dependent RNA helicase VASA; DEAD-BOX, protein	2e-25
3fe2_A	242	Probable ATP-dependent RNA helicase DDX5; DEAD, AD	2e-28
3fe2_A	242	Probable ATP-dependent RNA helicase DDX5; DEAD, AD	8e-21
2i4i_A	417	ATP-dependent RNA helicase DDX3X; DEAD, structural	6e-28
2i4i_A	417	ATP-dependent RNA helicase DDX3X; DEAD, structural	5e-21
3dkp_A	245	Probable ATP-dependent RNA helicase DDX52; DEAD, A	3e-23
3dkp_A	245	Probable ATP-dependent RNA helicase DDX52; DEAD, A	3e-16
1wrb_A	253	DJVLGB; RNA helicase, DEAD BOX, VASA, structural g	1e-22
1wrb_A	253	DJVLGB; RNA helicase, DEAD BOX, VASA, structural g	5e-20
3iuy_A	228	Probable ATP-dependent RNA helicase DDX53; REC-A-l	3e-19
3iuy_A	228	Probable ATP-dependent RNA helicase DDX53; REC-A-l	3e-18
3fho_A	508	ATP-dependent RNA helicase DBP5; mRNA export, ATPa	3e-13
3ber_A	249	Probable ATP-dependent RNA helicase DDX47; DEAD, A	7e-13
3ber_A	249	Probable ATP-dependent RNA helicase DDX47; DEAD, A	4e-10
2z0m_A	337	337AA long hypothetical ATP-dependent RNA helicase	6e-12
2z0m_A	337	337AA long hypothetical ATP-dependent RNA helicase	2e-08
3ly5_A	262	ATP-dependent RNA helicase DDX18; alpha-beta, stru	3e-11
3ly5_A	262	ATP-dependent RNA helicase DDX18; alpha-beta, stru	3e-08
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	3e-11
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	8e-09
2pl3_A	236	Probable ATP-dependent RNA helicase DDX10; DEAD, s	5e-11
2pl3_A	236	Probable ATP-dependent RNA helicase DDX10; DEAD, s	3e-10
1s2m_A	400	Putative ATP-dependent RNA helicase DHH1; ATP-bind	6e-11
1s2m_A	400	Putative ATP-dependent RNA helicase DHH1; ATP-bind	7e-09
3pey_A	395	ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A	1e-10
3pey_A	395	ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A	7e-07
1xti_A	391	Probable ATP-dependent RNA helicase P47; alpha-bet	1e-10
1xti_A	391	Probable ATP-dependent RNA helicase P47; alpha-bet	6e-08
1q0u_A	219	Bstdead; DEAD protein, RNA binding protein; 1.85A	1e-10
1q0u_A	219	Bstdead; DEAD protein, RNA binding protein; 1.85A	9e-07
1hv8_A	367	Putative ATP-dependent RNA helicase MJ0669; RNA-bi	4e-10
1hv8_A	367	Putative ATP-dependent RNA helicase MJ0669; RNA-bi	3e-08
3fht_A	412	ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box	5e-10
3fht_A	412	ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box	6e-07
3fmp_B	479	ATP-dependent RNA helicase DDX19B; nuclear porin,	5e-10
3fmp_B	479	ATP-dependent RNA helicase DDX19B; nuclear porin,	1e-06
3sqw_A	579	ATP-dependent RNA helicase MSS116, mitochondrial;	5e-10
3sqw_A	579	ATP-dependent RNA helicase MSS116, mitochondrial;	3e-08
2j0s_A	410	ATP-dependent RNA helicase DDX48; mRNA processing,	9e-10
2j0s_A	410	ATP-dependent RNA helicase DDX48; mRNA processing,	6e-08
3i5x_A	563	ATP-dependent RNA helicase MSS116; protein-RNA com	1e-09
3i5x_A	563	ATP-dependent RNA helicase MSS116; protein-RNA com	1e-08
3eiq_A	414	Eukaryotic initiation factor 4A-I; PDCD4, anti-onc	1e-09
3eiq_A	414	Eukaryotic initiation factor 4A-I; PDCD4, anti-onc	5e-08
3oiy_A	414	Reverse gyrase helicase domain; topoisomerase, DNA	1e-09
3oiy_A	414	Reverse gyrase helicase domain; topoisomerase, DNA	2e-07
1fuu_A	394	Yeast initiation factor 4A; IF4A, helicase, DEAD-b	2e-09
1fuu_A	394	Yeast initiation factor 4A; IF4A, helicase, DEAD-b	2e-08
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	3e-09
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	6e-07
2oxc_A	230	Probable ATP-dependent RNA helicase DDX20; DEAD, s	9e-09
2oxc_A	230	Probable ATP-dependent RNA helicase DDX20; DEAD, s	6e-06
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	2e-08
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	2e-06
3bor_A	237	Human initiation factor 4A-II; translation initiat	3e-08
3bor_A	237	Human initiation factor 4A-II; translation initiat	2e-06
1t6n_A	220	Probable ATP-dependent RNA helicase; RECA-like fol	3e-08
1t6n_A	220	Probable ATP-dependent RNA helicase; RECA-like fol	1e-05
3fmo_B	300	ATP-dependent RNA helicase DDX19B; nuclear porin,	7e-07
3fmo_B	300	ATP-dependent RNA helicase DDX19B; nuclear porin,	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
2jgn_A	185	DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp	8e-05
2p6n_A	191	ATP-dependent RNA helicase DDX41; DEAD, structural	3e-04

>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434

 Score =  112 bits (283), Expect = 2e-29
 Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 8/94 (8%)

Query: 100 EPQVRSICDHV--RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVV 157
              +R I  HV  RP  QTL+FSATF + I+++A + L + + +  G +G A +D+ Q +
Sbjct: 221 SEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTI 280

Query: 158 INLPQTQKLTWLTHNLVEFLST--GSLLIFVTKK 189
             + +  K +     L+E LS      ++FV  K
Sbjct: 281 YEVNKYAKRSK----LIEILSEQADGTIVFVETK 310

>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434

 Score =  101 bits (254), Expect = 2e-25
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 8/91 (8%)

Query: 17 EVEKNFYQPHEDIARLTPQEAQELRA--------KSGITVSGADPPYPVSSFGHFGFDEV 68
          E    FY P E         +  + +           + V+G+D P P+  F      ++
Sbjct: 7  EFPGEFYIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDI 66

Query: 69 LMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          ++  + K  Y  PTPIQ  ++P   SGRD++
Sbjct: 67 IIDNVNKSGYKIPTPIQKCSIPVISSGRDLM 97

>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242

 Score =  106 bits (266), Expect = 2e-28
 Identities = 27/70 (38%), Positives = 37/70 (52%)

Query: 30 ARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAV 89
          +  T QE +  R    ITV G + P PV +F    F   +M  + +  +T PT IQAQ  
Sbjct: 1  SMRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 60

Query: 90 PAALSGRDII 99
          P ALSG D++
Sbjct: 61 PVALSGLDMV 70

>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242

 Score = 86.1 bits (214), Expect = 8e-21
 Identities = 24/47 (51%), Positives = 33/47 (70%)

Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDI 146
           EPQ+R I D +RP+RQTL++SAT+ K + +LA D L D I I  G +
Sbjct: 194 EPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240

>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417

 Score =  108 bits (272), Expect = 6e-28
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 4/94 (4%)

Query: 100 EPQVRSICDH--VRP--NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQ 155
           EPQ+R I +   + P   R T++FSATF K I+ LARD L + I +  G +G  + +ITQ
Sbjct: 193 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 252

Query: 156 VVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKK 189
            V+ + ++ K ++L   L         L+FV  K
Sbjct: 253 KVVWVEESDKRSFLLDLLNATGKDSLTLVFVETK 286

>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417

 Score = 89.1 bits (222), Expect = 5e-21
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 46 ITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          +  +G + P  + SF      E++M  +    YT PTP+Q  A+P     RD++
Sbjct: 3  VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLM 56

>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245

 Score = 92.6 bits (231), Expect = 3e-23
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 35 QEAQELRAKSGITVSGADPPYPVSSFGH----FGFDEVLMKALRKCEYTSPTPIQAQAVP 90
           +   LR K  I V G D P P+++F      +  +  L++ +    +  PTPIQ QA+P
Sbjct: 2  MKINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIP 61

Query: 91 AALSGRDII 99
            L GR+++
Sbjct: 62 VMLHGRELL 70

>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245

 Score = 73.8 bits (182), Expect = 3e-16
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 100 EPQVRSICDHVRP-NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANT 151
             Q+ SI         +  +FSATF   +E+  +  L + I +    IG  N+
Sbjct: 196 RDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVS---IGARNS 245

>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253

 Score = 91.1 bits (227), Expect = 1e-22
 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 100 EPQVRSICDHVRP----NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQ 155
           EPQ+R I +        NRQTL+FSATF K I+KLA D L + I +  G +G  +  I Q
Sbjct: 192 EPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQ 251

Query: 156 VV 157
            +
Sbjct: 252 EI 253

>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253

 Score = 84.1 bits (209), Expect = 5e-20
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 46 ITVSGAD--PPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          ++V+G D      + +F     D  +   +    Y  PTPIQ  A+PA L  RDI+
Sbjct: 9  VSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIM 64

>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228

 Score = 81.4 bits (202), Expect = 3e-19
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
           EPQ+R I   VRP+RQT++ SAT+   + +LA   L DP+ +
Sbjct: 185 EPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIV 226

>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228

 Score = 78.8 bits (195), Expect = 3e-18
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 46 ITVSGADPPYPVSSFGH-FGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
           +      P P   F   F     L+K++ +     PTPIQ+QA P  L G D+I
Sbjct: 7  KSGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLI 61

>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249

 Score = 64.6 bits (158), Expect = 7e-13
 Identities = 20/76 (26%), Positives = 30/76 (39%)

Query: 24 QPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTP 83
             +        ++ E                   +F   G  +VL +A  +  +T PT 
Sbjct: 9  SGVDLGTENLYFQSMEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTK 68

Query: 84 IQAQAVPAALSGRDII 99
          IQ +A+P AL GRDII
Sbjct: 69 IQIEAIPLALQGRDII 84

>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249

 Score = 56.9 bits (138), Expect = 4e-10
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
           E +V  I   +  +R+T LFSAT  K+++KL R  L +P+K 
Sbjct: 204 ETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKC 245

>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337

 Score = 62.9 bits (154), Expect = 6e-12
 Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 12/108 (11%)

Query: 103 VRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ 162
           ++ I       + T LFSAT  + I K+ +D +T+  +I   +      ++    +++  
Sbjct: 150 IKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEI---EACIGLANVEHKFVHVKD 206

Query: 163 TQKLTWLTHNLVEFLSTGSLLIFV-TKKCFELVNLIAKNYWLIQAVGI 209
             +        +       +++FV T+     V  + +      A+ +
Sbjct: 207 DWRS--KVQ-ALRENKDKGVIVFVRTRNR---VAKLVR--LFDNAIEL 246

>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 8/34 (23%), Positives = 23/34 (67%)

Query: 66 DEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          +E + +A+R+  + + T +Q++ +P  L G++++
Sbjct: 2  NEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVV 35

>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 20/93 (21%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 7  PIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFD 66
             HS+ V    E  ++Q   ++ +    E +       + ++GA      +S  +   +
Sbjct: 4  HHHHSSGVDLGTENLYFQSMNNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCN-LVN 62

Query: 67 EVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          E  +KA+++  +T+ T IQ +++   L GRD++
Sbjct: 63 ENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLL 95

>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLT-DPIKI 141
           E +++ I   +   RQT+LFSAT  +++E LAR  L  +P+ +
Sbjct: 219 EEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYV 261

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207

 Score = 59.5 bits (145), Expect = 3e-11
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 59 SFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
           F  F     +++AL     T+PTPIQA A+P AL G+D+I
Sbjct: 2  EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLI 42

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207

 Score = 52.9 bits (128), Expect = 8e-09
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 101 PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
            +V ++     P+RQTLLFSAT     ++LA   + +P+ I
Sbjct: 163 EEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLI 203

>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236

 Score = 59.2 bits (144), Expect = 5e-11
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          ++ F  F   +  +K L++ +Y   T IQ Q +  AL G+D++
Sbjct: 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVL 66

>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 15/42 (35%), Positives = 25/42 (59%)

Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
              + ++ +++   RQTLLFSAT  K ++ LAR  L +P  +
Sbjct: 189 ADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYV 230

>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400

 Score = 59.9 bits (146), Expect = 6e-11
 Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 9/106 (8%)

Query: 101 PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANT--DITQVVI 158
             +  I   + P  Q+LLFSATF   +++     L  P +I   ++ E  T   ITQ   
Sbjct: 182 TIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEI---NLMEELTLKGITQYYA 238

Query: 159 NLPQTQKLTWLTHNLVEFLSTGSLLIFV--TKKCFELVN-LIAKNY 201
            + + QKL  L   L   L     +IF   T +   L   +    Y
Sbjct: 239 FVEERQKLHCLNT-LFSKLQINQAIIFCNSTNRVELLAKKITDLGY 283

>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400

 Score = 53.7 bits (130), Expect = 7e-09
 Identities = 14/42 (33%), Positives = 26/42 (61%)

Query: 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          ++F  F     L+  + +  +  P+PIQ +A+P A++GRDI+
Sbjct: 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDIL 62

>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 9/106 (8%)

Query: 102 QVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI-VQGDIGEANTD-ITQVVIN 159
           Q   +   +  + Q +LFSATF   + + A+ ++ +   + +Q +  E N D I Q+ ++
Sbjct: 166 QCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTN--EVNVDAIKQLYMD 223

Query: 160 LP-QTQKLTWLTHNLVEFLSTGSLLIFV-TK-KCFELVN-LIAKNY 201
              +  K   LT  L   ++ GS +IFV TK     L   L ++ +
Sbjct: 224 CKNEADKFDVLT-ELYGLMTIGSSIIFVATKKTANVLYGKLKSEGH 268

>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395

 Score = 47.9 bits (115), Expect = 7e-07
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 55 YPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDII 99
              SF   G    L+K +   ++  P+ IQ +A+P  L    R++I
Sbjct: 2  AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMI 48

>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 101 PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI-VQGDIGEANTDITQVVIN 159
             V+ I       +Q ++FSAT  K I  + R  + DP++I V  +       + Q  + 
Sbjct: 172 RDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVK 231

Query: 160 LPQTQKLTWLTHNLVEFLSTGSLLIFV--TKKCFELVN-LIAKNY 201
           L   +K   L  +L++ L    ++IFV   ++C  L   L+ +N+
Sbjct: 232 LKDNEKNRKLF-DLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNF 275

>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391

 Score = 51.0 bits (123), Expect = 6e-08
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          S F  F     L++A+  C +  P+ +Q + +P A+ G D++
Sbjct: 8  SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVL 49

>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219

 Score = 58.0 bits (141), Expect = 1e-10
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          + F  F F   +++A++   +  PT IQ + +P AL G  ++
Sbjct: 4  TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMV 45

>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219

 Score = 46.8 bits (112), Expect = 9e-07
 Identities = 9/40 (22%), Positives = 20/40 (50%)

Query: 102 QVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
            V  I   +  + Q L+FSAT  ++++   +  + +P  +
Sbjct: 170 DVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFV 209

>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367

 Score = 57.5 bits (140), Expect = 4e-10
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 19/107 (17%)

Query: 103 VRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDP--IKIVQGDIGEANTDITQVVINL 160
           V  I +    +++ LLFSAT  + I  LA+  + D   IK       + N +I Q  + +
Sbjct: 168 VEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA------KINANIEQSYVEV 221

Query: 161 PQTQKLTWLTHNLVE---FLSTGSLLIFV-TKK-CFELVN-LIAKNY 201
            + ++   L   L++   F      L+F  TK+   EL + L    +
Sbjct: 222 NENERFEALC-RLLKNKEFYG----LVFCKTKRDTKELASMLRDIGF 263

>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 59 SFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGR-DII 99
          +F      + ++ A+R   +  PT IQ + +P  L+   +I+
Sbjct: 7  NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIV 48

>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412

 Score = 57.6 bits (140), Expect = 5e-10
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 102 QVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI-VQGDIGEANTD-ITQVVIN 159
           Q   I   +  N Q LLFSATF+  + K A+ V+ DP  I ++ +  E   D I Q  + 
Sbjct: 189 QSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE--EETLDTIKQYYVL 246

Query: 160 LPQ-TQKLTWLTHNLVEFLSTGSLLIFV-TKK 189
                +K   L  NL   ++    +IF  T+K
Sbjct: 247 CSSRDEKFQALC-NLYGAITIAQAMIFCHTRK 277

>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412

 Score = 47.9 bits (115), Expect = 6e-07
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 53 PPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDII 99
          P Y V SF        L++ +    +  P+ IQ  A+P  L+   +++I
Sbjct: 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLI 68

>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 7/92 (7%)

Query: 102 QVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI-VQGDIGEANTD-ITQVVIN 159
           Q   I   +  N Q LLFSATF+  + K A+ V+ DP  I ++ +  E   D I Q  + 
Sbjct: 256 QSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE--EETLDTIKQYYVL 313

Query: 160 LP-QTQKLTWLTHNLVEFLSTGSLLIFV-TKK 189
              + +K   L  NL   ++    +IF  T+K
Sbjct: 314 CSSRDEKFQALC-NLYGAITIAQAMIFCHTRK 344

>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 53  PPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDII 99
           P Y V SF        L++ +    +  P+ IQ  A+P  L+   +++I
Sbjct: 87  PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLI 135

>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579

 Score = 57.5 bits (139), Expect = 5e-10
 Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 15/107 (14%)

Query: 96  RDIIE--PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDP--IKIVQGDIGEANT 151
             I     +  S       N +TLLFSAT   +++KLA +++     + +   D  E   
Sbjct: 197 ETISGILNEKNS---KSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA 253

Query: 152 --DITQVVINLPQTQKLTWLTH-----NLVEFLSTGSLLIFV-TKKC 190
              I Q V+   +     +         + E  S    +IF  T K 
Sbjct: 254 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKF 300

>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 49 SGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDII 99
            +      S       D+ + KA+ + E+   TP+Q + +   LS    D+I
Sbjct: 12 DNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVI 64

>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410

 Score = 56.8 bits (138), Expect = 9e-10
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 9/107 (8%)

Query: 101 PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI-VQGDIGEANTD-ITQVVI 158
            Q+  +  ++ P  Q +L SAT    I ++    +TDPI+I V+ D  E   + I Q  +
Sbjct: 198 EQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD--ELTLEGIKQFFV 255

Query: 159 NLPQ-TQKLTWLTHNLVEFLSTGSLLIFV--TKKCFELVN-LIAKNY 201
            + +   K   L  +L + L+    +IF    +K   L   +   N+
Sbjct: 256 AVEREEWKFDTLC-DLYDTLTITQAVIFCNTKRKVDWLTEKMREANF 301

>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410

 Score = 51.4 bits (124), Expect = 6e-08
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
            +F   G  E L++ +    +  P+ IQ +A+   + GRD+I
Sbjct: 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVI 78

>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 15/106 (14%)

Query: 96  RDIIE--PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDP--IKIVQGDIGEANT 151
             I     +  S       N +TLLFSAT   +++KLA +++     + +   D  E   
Sbjct: 248 ETISGILNEKNS---KSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA 304

Query: 152 --DITQVVINLPQTQKLTWLTH-----NLVEFLSTGSLLIFV-TKK 189
              I Q V+   +     +         + E  S    +IF  T K
Sbjct: 305 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVK 350

>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 2/78 (2%)

Query: 24  QPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTP 83
           +  ED   +   +    +         +      S       D+ + KA+ + E+   TP
Sbjct: 38  RSREDDDEVHFDKTTFSKLIHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTP 97

Query: 84  IQAQAVPAALSG--RDII 99
           +Q + +   LS    D+I
Sbjct: 98  VQQKTIKPILSSEDHDVI 115

>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 9/107 (8%)

Query: 101 PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI-VQGDIGEANTD-ITQVVI 158
            Q+  I   +  N Q +L SAT    + ++ +  + DPI+I V+ +  E   + I Q  I
Sbjct: 202 DQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE--ELTLEGIRQFYI 259

Query: 159 NLPQT-QKLTWLTHNLVEFLSTGSLLIFV--TKKCFELVN-LIAKNY 201
           N+ +   KL  L  +L E L+    +IF+   +K   L   + A+++
Sbjct: 260 NVEREEWKLDTLC-DLYETLTITQAVIFINTRRKVDWLTEKMHARDF 305

>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414

 Score = 51.4 bits (124), Expect = 5e-08
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          V SF      E L++ +    +  P+ IQ +A+   + G D+I
Sbjct: 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVI 81

>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 27/111 (24%)

Query: 101 PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDV---------------------LTDPI 139
                +   +        FS   + +I +  +++                       D +
Sbjct: 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLL 217

Query: 140 KIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFV-TKK 189
               G +     +IT V I+    +KL  L     +      +LIF  T++
Sbjct: 218 NFTVGRLVSVARNITHVRISSRSKEKLVELLEIFRD-----GILIFAQTEE 263

>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 5/33 (15%), Positives = 8/33 (24%)

Query: 67 EVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          E      +K      T  Q       + G+   
Sbjct: 8  EDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFT 40

>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 9/107 (8%)

Query: 101 PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI-VQGDIGEANTD-ITQVVI 158
            Q+  I   + P  Q +L SAT    + ++    + +P++I V+ D  E   + I Q  +
Sbjct: 181 EQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD--ELTLEGIKQFYV 238

Query: 159 NLPQTQ-KLTWLTHNLVEFLSTGSLLIFV--TKKCFELVN-LIAKNY 201
           N+ + + K   LT +L + +S    +IF    +K  EL   L    +
Sbjct: 239 NVEEEEYKYECLT-DLYDSISVTQAVIFCNTRRKVEELTTKLRNDKF 284

>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 51 ADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
           +    V  F     DE L++ +    +  P+ IQ +A+   + G D++
Sbjct: 14 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVL 62

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 14/42 (33%), Positives = 25/42 (59%)

Query: 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          + F  +     L+  + +  +  P+PIQ +++P ALSGRDI+
Sbjct: 3  NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDIL 44

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206

 Score = 47.1 bits (113), Expect = 6e-07
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 101 PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
             +  I   +  NRQ LL+SATF   ++K     L  P +I
Sbjct: 165 QIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205

>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230

 Score = 53.0 bits (128), Expect = 9e-09
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          + F        +++ LR   +  P+P+Q +A+P    G D+I
Sbjct: 24 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLI 65

>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230

 Score = 44.9 bits (107), Expect = 6e-06
 Identities = 9/41 (21%), Positives = 18/41 (43%)

Query: 101 PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
            Q+  I   +  ++Q L  SAT+ + +       + DP  +
Sbjct: 186 EQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFV 226

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          V  F     DE L++ +    +  P+ IQ +A+   + G D++
Sbjct: 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVL 55

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 102 QVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
           Q+  I   + P  Q +L SAT    + ++    + +P++I
Sbjct: 175 QIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRI 214

>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          V +F      E L++ +    +  P+ IQ +A+   + G D+I
Sbjct: 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVI 71

>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 102 QVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
           Q+  I   +  + Q +L SAT    + ++ +  + DPI+I
Sbjct: 193 QIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRI 232

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          S F  F     L++A+  C +  P+ +Q + +P A+ G D++
Sbjct: 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVL 55

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 102 QVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
            V+ I       +Q ++FSAT  K I  + R  + DP++I
Sbjct: 179 DVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 218

>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300

 Score = 47.8 bits (114), Expect = 7e-07
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 53  PPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDII 99
           P Y V SF        L++ +    +  P+ IQ  A+P  L+   +++I
Sbjct: 87  PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLI 135

>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300

 Score = 47.8 bits (114), Expect = 7e-07
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 102 QVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
           Q   I   +  N Q LLFSATF+  + K A+ V+ DP  I
Sbjct: 256 QSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI 295

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 9e-06
 Identities = 42/274 (15%), Positives = 88/274 (32%), Gaps = 94/274 (34%)

Query: 1   YIDPLPPIDHSTIVYEEVEKNFYQ-----PHEDIARLTP----QEA-QELRAKSGITVSG 50
              P       T +Y E     Y         +++RL P    ++A  ELR    + + G
Sbjct: 102 QRQPSMM----TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 51  ----------AD----------PPYPVS--SFGHFGFDEVLMKALRK------------C 76
                      D            + +   +  +    E +++ L+K             
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 77  EYTSPTPIQAQAVPAALSGRDII--EPQVRS--ICDHVRPNRQTL-LFSATFKKRIEKLA 131
           +++S   ++  ++ A L  R ++  +P      +  +V+ N +    F+     +I  L 
Sbjct: 218 DHSSNIKLRIHSIQAEL--RRLLKSKPYENCLLVLLNVQ-NAKAWNAFN--LSCKI--L- 269

Query: 132 RDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF 191
             + T                +T  +            TH  ++  S       +T    
Sbjct: 270 --LTT------------RFKQVTDFLSAATT-------THISLDHHSMT-----LTPD-- 301

Query: 192 ELVNLIAKNYWLIQAVGIL---MCPKSPSRLSLV 222
           E+ +L+ K  +L      L   +   +P RLS++
Sbjct: 302 EVKSLLLK--YLDCRPQDLPREVLTTNPRRLSII 333

>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185

 Score = 41.0 bits (97), Expect = 8e-05
 Identities = 12/53 (22%), Positives = 21/53 (39%)

Query: 137 DPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKK 189
                     G  + +ITQ V+ + ++ K ++L   L         L+FV  K
Sbjct: 4   HHHHENLYFQGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETK 56

>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 13/64 (20%)

Query: 135 LTDPIKI-------VQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGS--LLIF 185
                 +           +G A+ D+ Q V  + +  K+ +    L+E L      +LIF
Sbjct: 5   HHHSSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVY----LLECLQKTPPPVLIF 60

Query: 186 VTKK 189
             KK
Sbjct: 61  AEKK 64

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
2db3_A	434	ATP-dependent RNA helicase VASA; DEAD-BOX, protein	99.97
2i4i_A	417	ATP-dependent RNA helicase DDX3X; DEAD, structural	99.93
2j0s_A	410	ATP-dependent RNA helicase DDX48; mRNA processing,	99.9
3fht_A	412	ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box	99.88
3fmp_B	479	ATP-dependent RNA helicase DDX19B; nuclear porin,	99.88
3pey_A	395	ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A	99.87
3eiq_A	414	Eukaryotic initiation factor 4A-I; PDCD4, anti-onc	99.86
1xti_A	391	Probable ATP-dependent RNA helicase P47; alpha-bet	99.86
1s2m_A	400	Putative ATP-dependent RNA helicase DHH1; ATP-bind	99.86
1fuu_A	394	Yeast initiation factor 4A; IF4A, helicase, DEAD-b	99.84
1hv8_A	367	Putative ATP-dependent RNA helicase MJ0669; RNA-bi	99.82
3fe2_A	242	Probable ATP-dependent RNA helicase DDX5; DEAD, AD	99.81
3fho_A	508	ATP-dependent RNA helicase DBP5; mRNA export, ATPa	99.78
3sqw_A	579	ATP-dependent RNA helicase MSS116, mitochondrial;	99.78
3i5x_A	563	ATP-dependent RNA helicase MSS116; protein-RNA com	99.76
3dkp_A	245	Probable ATP-dependent RNA helicase DDX52; DEAD, A	99.7
1oyw_A	523	RECQ helicase, ATP-dependent DNA helicase; winged	99.7
2v1x_A	591	ATP-dependent DNA helicase Q1; DNA strand annealin	99.69
2z0m_A	337	337AA long hypothetical ATP-dependent RNA helicase	99.66
1wrb_A	253	DJVLGB; RNA helicase, DEAD BOX, VASA, structural g	99.65
3fmo_B	300	ATP-dependent RNA helicase DDX19B; nuclear porin,	99.65
3bor_A	237	Human initiation factor 4A-II; translation initiat	99.59
3iuy_A	228	Probable ATP-dependent RNA helicase DDX53; REC-A-l	99.58
2pl3_A	236	Probable ATP-dependent RNA helicase DDX10; DEAD, s	99.54
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	99.53
2oxc_A	230	Probable ATP-dependent RNA helicase DDX20; DEAD, s	99.52
1tf5_A	844	Preprotein translocase SECA subunit; ATPase, helic	99.5
1q0u_A	219	Bstdead; DEAD protein, RNA binding protein; 1.85A	99.5
3ber_A	249	Probable ATP-dependent RNA helicase DDX47; DEAD, A	99.5
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	99.49
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	99.47
1t6n_A	220	Probable ATP-dependent RNA helicase; RECA-like fol	99.46
2va8_A	715	SSO2462, SKI2-type helicase; hydrolase, DNA repair	99.43
3l9o_A	1108	ATP-dependent RNA helicase DOB1; REC-A fold, winge	99.42
2zj8_A	720	DNA helicase, putative SKI2-type helicase; RECA fo	99.41
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	99.41
2p6n_A	191	ATP-dependent RNA helicase DDX41; DEAD, structural	99.36
2p6r_A	702	Afuhel308 helicase; protein-DNA complex, SF2 helic	99.35
3oiy_A	414	Reverse gyrase helicase domain; topoisomerase, DNA	99.32
3ly5_A	262	ATP-dependent RNA helicase DDX18; alpha-beta, stru	99.3
4ddu_A	1104	Reverse gyrase; topoisomerase, DNA supercoiling, a	99.29
1nkt_A	922	Preprotein translocase SECA 1 subunit; preprotein	99.23
1gku_B	1054	Reverse gyrase, TOP-RG; topoisomerase, DNA superco	99.2
2jgn_A	185	DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp	99.16
2ykg_A	696	Probable ATP-dependent RNA helicase DDX58; hydrola	99.13
2eyq_A	1151	TRCF, transcription-repair coupling factor; MFD, S	99.13
2xgj_A	1010	ATP-dependent RNA helicase DOB1; hydrolase-RNA com	99.13
2hjv_A	163	ATP-dependent RNA helicase DBPA; parallel alpha-be	99.12
1t5i_A	172	C_terminal domain of A probable ATP-dependent RNA	99.12
2whx_A	618	Serine protease/ntpase/helicase NS3; transcription	99.1
2fsf_A	853	Preprotein translocase SECA subunit; ATPase, DNA-R	99.09
2rb4_A	175	ATP-dependent RNA helicase DDX25; rossmann fold, s	99.06
4a4z_A	997	Antiviral helicase SKI2; hydrolase, ATPase, mRNA d	99.05
1fuk_A	165	Eukaryotic initiation factor 4A; helicase, DEAD-bo	99.03
4f92_B	1724	U5 small nuclear ribonucleoprotein 200 kDa helica;	99.01
4a2p_A	556	RIG-I, retinoic acid inducible protein I; hydrolas	98.89
3i32_A	300	Heat resistant RNA dependent ATPase; RNA helicase,	98.83
4a2q_A	797	RIG-I, retinoic acid inducible protein I; hydrolas	98.81
3tbk_A	555	RIG-I helicase domain; DECH helicase, ATP binding,	98.8
2yjt_D	170	ATP-dependent RNA helicase SRMB, regulator of ribo	98.27
2wv9_A	673	Flavivirin protease NS2B regulatory subunit, FLAV	98.78
4f92_B	1724	U5 small nuclear ribonucleoprotein 200 kDa helica;	98.77
4a2w_A	936	RIG-I, retinoic acid inducible protein I; hydrolas	98.76
3eaq_A	212	Heat resistant RNA dependent ATPase; DEAD box RNA	98.71
1gm5_A	780	RECG; helicase, replication restart; HET: DNA ADP;	98.68
1wp9_A	494	ATP-dependent RNA helicase, putative; ATPase, DNA	98.68
2jlq_A	451	Serine protease subunit NS3; ribonucleoprotein, nu	98.67
2oca_A	510	DAR protein, ATP-dependent DNA helicase UVSW; ATP-	98.6
2d7d_A	661	Uvrabc system protein B; helicase, protein-DNA-ADP	98.58
1c4o_A	664	DNA nucleotide excision repair enzyme UVRB; uvrabc	98.48
3o8b_A	666	HCV NS3 protease/helicase; ntpase, RNA, translocat	98.32
3jux_A	822	Protein translocase subunit SECA; protein transloc	98.31
1yks_A	440	Genome polyprotein [contains: flavivirin protease	98.24
2fwr_A	472	DNA repair protein RAD25; DNA unwinding, XPB, DNA	98.15
2z83_A	459	Helicase/nucleoside triphosphatase; hydrolase, mem	98.09
2v6i_A	431	RNA helicase; membrane, hydrolase, transmembrane,	97.99
4gl2_A	699	Interferon-induced helicase C domain-containing P;	97.84
1z5z_A	271	Helicase of the SNF2/RAD54 family; hydrolase, reco	97.76
3dmq_A	968	RNA polymerase-associated protein RAPA; SWF2/SNF2,	97.6
3rc3_A	677	ATP-dependent RNA helicase SUPV3L1, mitochondrial;	97.56
3h1t_A	590	Type I site-specific restriction-modification syst	97.49
1z63_A	500	Helicase of the SNF2/RAD54 hamily; protein-DNA com	97.01
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.94
3mwy_W	800	Chromo domain-containing protein 1; SWI2/SNF2 ATPa	96.94
1z3i_X	644	Similar to RAD54-like; recombination ATPase helica	96.84
1rif_A	282	DAR protein, DNA helicase UVSW; bacteriophage, REC	94.49
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	88.91
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	87.37
2w00_A	1038	HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri	87.28
3iwh_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	84.1
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	83.26
2jtq_A	85	Phage shock protein E; solution structure rhodanes	81.66
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	81.41
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	80.5
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	80.15

>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}

Probab=99.97  E-value=5.6e-30  Score=225.52  Aligned_cols=202  Identities=28%  Similarity=0.434  Sum_probs=169.2

Q ss_pred             ccccccccCCCChhhhcCCHHHHHHH------------HHHcCCEEecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCC
Q psy17636         15 YEEVEKNFYQPHEDIARLTPQEAQEL------------RAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPT   82 (222)
Q Consensus        15 ~~~~~k~~~~~~~~~~~~~~~~~~~~------------~~~~~i~v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pT   82 (222)
                      ..++++.||.++....    ++.+.+            ..+..+++.|.++|.|+.+|++++|++.++++|.++||.+||
T Consensus         5 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt   80 (434)
T 2db3_A            5 SPEFPGEFYIPPEPSN----DAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPT   80 (434)
T ss_dssp             --------CCCCCCCC----CHHHHTSCCCCCCTTGGGGGGSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCC
T ss_pred             CCCCCCCCCcCCCCch----hHHHHhhcCcccccChhhhcCceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCC
Confidence            4467788887776421    122222            233468899999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHhCCCCCC---------------------------------------------------------------
Q psy17636         83 PIQAQAVPAALSGRDII---------------------------------------------------------------   99 (222)
Q Consensus        83 pIQ~~~ip~il~g~dvi---------------------------------------------------------------   99 (222)
                      |+|+++||.+++|+|++                                                               
T Consensus        81 ~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~  160 (434)
T 2db3_A           81 PIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKI  160 (434)
T ss_dssp             HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCC
T ss_pred             HHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEE
Confidence            99999999999999998                                                               


Q ss_pred             ------------------------------------------------------------HHHHHHHHhhC--CCCCeEE
Q psy17636        100 ------------------------------------------------------------EPQVRSICDHV--RPNRQTL  117 (222)
Q Consensus       100 ------------------------------------------------------------~~~l~~Il~~~--~~~~Q~~  117 (222)
                                                                                  .+++..|+..+  ++++|++
T Consensus       161 ~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l  240 (434)
T 2db3_A          161 GIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTL  240 (434)
T ss_dssp             CEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEE
T ss_pred             EEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEE
Confidence                                                                        67788888875  5789999


Q ss_pred             EEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-H
Q psy17636        118 LFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-V  194 (222)
Q Consensus       118 lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~  194 (222)
                      +||||+|..+++++..++.++..+.++.......++.|.++.+...+|...|..++....  .++||||+|+..  .+ .
T Consensus       241 ~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~--~~~lVF~~t~~~a~~l~~  318 (434)
T 2db3_A          241 MFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQA--DGTIVFVETKRGADFLAS  318 (434)
T ss_dssp             EEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHCC--TTEEEECSSHHHHHHHHH
T ss_pred             EEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhCC--CCEEEEEeCcHHHHHHHH
Confidence            999999999999999999999999998888888899999999999999999988777643  459999999976  88 9


Q ss_pred             HhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        195 NLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       195 ~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .|...|+++..+||+|++.+|...+..|
T Consensus       319 ~L~~~~~~~~~lhg~~~~~~R~~~l~~F  346 (434)
T 2db3_A          319 FLSEKEFPTTSIHGDRLQSQREQALRDF  346 (434)
T ss_dssp             HHHHTTCCEEEESTTSCHHHHHHHHHHH
T ss_pred             HHHhCCCCEEEEeCCCCHHHHHHHHHHH
Confidence            9999999999999999999999998754

>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}

Probab=99.93  E-value=1e-24  Score=189.53  Aligned_cols=178  Identities=31%  Similarity=0.452  Sum_probs=155.2

Q ss_pred             CCEEecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-------------------------
Q psy17636         45 GITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------   99 (222)
Q Consensus        45 ~i~v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------   99 (222)
                      .+.+.|.++|.|+.+|+++++++.++++|..+||..|||+|.++||.+++|+|++                         
T Consensus         2 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~   81 (417)
T 2i4i_A            2 MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDG   81 (417)
T ss_dssp             CEEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHC
T ss_pred             CcccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcc
Confidence            3678899999999999999999999999999999999999999999999999988                         


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~  161 (417)
T 2i4i_A           82 PGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR  161 (417)
T ss_dssp             CCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHH
T ss_pred             ccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHH
Confidence                                                                                            


Q ss_pred             -------------------------------HHHHHHHHhh--CCC--CCeEEEEccccchHHHHHHHHhcCCCcEEEeC
Q psy17636        100 -------------------------------EPQVRSICDH--VRP--NRQTLLFSATFKKRIEKLARDVLTDPIKIVQG  144 (222)
Q Consensus       100 -------------------------------~~~l~~Il~~--~~~--~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~  144 (222)
                                                     .+.+..++..  ++.  .+|++++|||++..+..++..++.++..+.+.
T Consensus       162 l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~  241 (417)
T 2i4i_A          162 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG  241 (417)
T ss_dssp             HHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred             HHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeC
Confidence                                           4566666663  232  68999999999999999999999999999888


Q ss_pred             CCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcC
Q psy17636        145 DIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSL  221 (222)
Q Consensus       145 ~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~  221 (222)
                      .......++.+.++.++..+|...|..++......+++||||+++..  .+ ..|...|+.+..+||+|++++|...+..
T Consensus       242 ~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~  321 (417)
T 2i4i_A          242 RVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ  321 (417)
T ss_dssp             ----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHH
Confidence            77778889999999999999999888877765556799999999976  88 9999999999999999999999988765


Q ss_pred             C
Q psy17636        222 V  222 (222)
Q Consensus       222 ~  222 (222)
                      |
T Consensus       322 f  322 (417)
T 2i4i_A          322 F  322 (417)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A

Probab=99.90  E-value=5.2e-23  Score=178.66  Aligned_cols=172  Identities=21%  Similarity=0.314  Sum_probs=151.2

Q ss_pred             cCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------
Q psy17636         50 GADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------   99 (222)
Q Consensus        50 g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------   99 (222)
                      ....+.+..+|+++++++.++++|.+.||..|||+|.++||.+++|+|++                              
T Consensus        29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~  108 (410)
T 2j0s_A           29 TSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQA  108 (410)
T ss_dssp             CCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCE
T ss_pred             CCCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceE
Confidence            33445567899999999999999999999999999999999999999988                              


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       109 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEa  188 (410)
T 2j0s_A          109 LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEA  188 (410)
T ss_dssp             EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred             EEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccH
Confidence                                                                                            


Q ss_pred             --------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCc-hHHHHH
Q psy17636        100 --------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQ-KLTWLT  170 (222)
Q Consensus       100 --------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~-K~~~L~  170 (222)
                              ...+..++..+++++|++++|||++..+.+++..++.+|..+.+........++.+.+..++..+ |...|.
T Consensus       189 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~  268 (410)
T 2j0s_A          189 DEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC  268 (410)
T ss_dssp             HHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHH
Confidence                    57788888888889999999999999999999999999999887776677889999999888754 888887


Q ss_pred             HHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        171 HNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       171 ~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .++... ..+++||||+++..  .+ ..|...|+.+..+||+|++.+|...+..|
T Consensus       269 ~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f  322 (410)
T 2j0s_A          269 DLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEF  322 (410)
T ss_dssp             HHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred             HHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHH
Confidence            766654 45799999999976  88 99999999999999999999999988654

>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B

Probab=99.88  E-value=1.4e-21  Score=169.05  Aligned_cols=167  Identities=24%  Similarity=0.309  Sum_probs=147.2

Q ss_pred             CCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCC--CCCC---------------------------------
Q psy17636         55 YPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDII---------------------------------   99 (222)
Q Consensus        55 ~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g--~dvi---------------------------------   99 (222)
                      .++.+|+++++++.++++|.+.||..|||+|.++||.+++|  +|++                                 
T Consensus        22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil  101 (412)
T 3fht_A           22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL  101 (412)
T ss_dssp             CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred             cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEE
Confidence            44788999999999999999999999999999999999998  8887                                 


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       102 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~  181 (412)
T 3fht_A          102 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI  181 (412)
T ss_dssp             CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHh
Confidence                                                                                            


Q ss_pred             -----HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-CchHHHHHHHH
Q psy17636        100 -----EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ-TQKLTWLTHNL  173 (222)
Q Consensus       100 -----~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l  173 (222)
                           ...+..+...++.++|++++|||++..+..++..++.++..+.+.........+.+.++.+.. ..|...|..++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  261 (412)
T 3fht_A          182 ATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLY  261 (412)
T ss_dssp             STTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred             hcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHH
Confidence                 345666777778889999999999999999999999999999888777788899999998887 66777777666


Q ss_pred             HhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        174 VEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       174 ~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ... ..+++||||+++..  .+ ..|...|+.+..+||+|++++|...+..|
T Consensus       262 ~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f  312 (412)
T 3fht_A          262 GAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF  312 (412)
T ss_dssp             HHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred             hhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHH
Confidence            554 45799999999976  88 99999999999999999999999988654

>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}

Probab=99.88  E-value=1.1e-22  Score=180.49  Aligned_cols=176  Identities=24%  Similarity=0.319  Sum_probs=87.6

Q ss_pred             CEEecCCCCCC---CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCC--CCCC---------------------
Q psy17636         46 ITVSGADPPYP---VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDII---------------------   99 (222)
Q Consensus        46 i~v~g~~~p~~---~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g--~dvi---------------------   99 (222)
                      +.+.+.+.+.|   +.+|.+++|++.++++|.++||..|||+|.++||.++.|  +|++                     
T Consensus        77 ~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l  156 (479)
T 3fmp_B           77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV  156 (479)
T ss_dssp             EEEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred             ceecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHH
Confidence            44666666655   578999999999999999999999999999999999987  8887                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       157 ~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~  236 (479)
T 3fmp_B          157 EPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKI  236 (479)
T ss_dssp             CTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGC
T ss_pred             hhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccC
Confidence                                                                                            


Q ss_pred             -----------------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC
Q psy17636        100 -----------------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ  162 (222)
Q Consensus       100 -----------------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~  162 (222)
                                       ...+..++..++.++|+++||||++..+..++..++.+|..+.+.........+.|.++.++.
T Consensus       237 ~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  316 (479)
T 3fmp_B          237 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS  316 (479)
T ss_dssp             CEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC------------------
T ss_pred             CEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCC
Confidence                             446667777788899999999999999999999999999999998887788899999998887


Q ss_pred             -CchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        163 -TQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       163 -~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                       ..|...|..++.. ...+++||||+++..  .+ ..|...|+.+..+||+|++.+|...+..|
T Consensus       317 ~~~~~~~l~~~~~~-~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f  379 (479)
T 3fmp_B          317 RDEKFQALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF  379 (479)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhh-ccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHH
Confidence             6677777665543 345799999999976  88 99999999999999999999999988765

>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*

Probab=99.87  E-value=5e-21  Score=164.47  Aligned_cols=166  Identities=22%  Similarity=0.303  Sum_probs=143.6

Q ss_pred             CCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCC--CCCC----------------------------------
Q psy17636         56 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDII----------------------------------   99 (222)
Q Consensus        56 ~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g--~dvi----------------------------------   99 (222)
                      ...+|++++|++.++++|.+.||..|||+|.++|+.++.|  +|++                                  
T Consensus         3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~   82 (395)
T 3pey_A            3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA   82 (395)
T ss_dssp             -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred             cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence            3578999999999999999999999999999999999998  8887                                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~  162 (395)
T 3pey_A           83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQG  162 (395)
T ss_dssp             SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTT
T ss_pred             CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccc
Confidence                                                                                            


Q ss_pred             -HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-CchHHHHHHHHHhhC
Q psy17636        100 -EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ-TQKLTWLTHNLVEFL  177 (222)
Q Consensus       100 -~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~~~  177 (222)
                       ...+..+...++++.|++++|||++..+..++..++.++..+.+.........+.+.+..+.. ..|...|..+ ....
T Consensus       163 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~  241 (395)
T 3pey_A          163 LGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTEL-YGLM  241 (395)
T ss_dssp             HHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHH-HTTT
T ss_pred             cHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHH-HHhc
Confidence             355666777788899999999999999999999999999988877776777889999988876 5666666554 4444


Q ss_pred             CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        178 STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ..+++||||+++..  .+ ..|+..|+.+..+||+|++++|...+..|
T Consensus       242 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f  289 (395)
T 3pey_A          242 TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDF  289 (395)
T ss_dssp             TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHH
Confidence            56899999999976  88 99999999999999999999999988654

>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}

Probab=99.86  E-value=3.3e-21  Score=167.03  Aligned_cols=173  Identities=21%  Similarity=0.305  Sum_probs=149.2

Q ss_pred             ecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-----------------------------
Q psy17636         49 SGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-----------------------------   99 (222)
Q Consensus        49 ~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-----------------------------   99 (222)
                      .+.+.+....+|+++++++.+.+.|.+.||..|+|+|.++|+.++.|+|++                             
T Consensus        31 ~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~  110 (414)
T 3eiq_A           31 IESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQ  110 (414)
T ss_dssp             CCCCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCC
T ss_pred             cCCCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCcee
Confidence            344556677899999999999999999999999999999999999999988                             


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       111 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViD  190 (414)
T 3eiq_A          111 ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLD  190 (414)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEEC
T ss_pred             EEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEE
Confidence                                                                                            


Q ss_pred             ----------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-CchHHH
Q psy17636        100 ----------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ-TQKLTW  168 (222)
Q Consensus       100 ----------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~  168 (222)
                                ...+..++..+++++|++++|||++..+..++..++.++..+.+.........+.+.+..+.. ..|...
T Consensus       191 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (414)
T 3eiq_A          191 EADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDT  270 (414)
T ss_dssp             SHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHH
T ss_pred             CHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHH
Confidence                      467788888888999999999999999999999999999999887777788889999998887 448887


Q ss_pred             HHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        169 LTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       169 L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      |..++.. ...+++||||+++..  .+ ..|...|+.+..+||+|++.+|...+..|
T Consensus       271 l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f  326 (414)
T 3eiq_A          271 LCDLYET-LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREF  326 (414)
T ss_dssp             HHHHHHS-SCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHH
T ss_pred             HHHHHHh-CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHH
Confidence            7665554 456799999999977  88 99999999999999999999999987654

>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A

Probab=99.86  E-value=1.1e-20  Score=162.63  Aligned_cols=164  Identities=24%  Similarity=0.364  Sum_probs=144.0

Q ss_pred             CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636         58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------------------------------------   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------------------------------------   99 (222)
                      .+|+++++++.++++|.++||..|+|+|.++|+.++.|+|++                                      
T Consensus         8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~   87 (391)
T 1xti_A            8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE   87 (391)
T ss_dssp             -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred             CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence            579999999999999999999999999999999999999988                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~  167 (391)
T 1xti_A           88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ  167 (391)
T ss_dssp             HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSS
T ss_pred             HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhc
Confidence                                                                                            


Q ss_pred             ---HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCC-CCCCCeeEEEEEcCCCchHHHHHHHHHh
Q psy17636        100 ---EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIG-EANTDITQVVINLPQTQKLTWLTHNLVE  175 (222)
Q Consensus       100 ---~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~  175 (222)
                         ...+..++...+.++|++++|||++..+..++..++.+|..+.+.... ....++.+.+..++..+|...|..++..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  247 (391)
T 1xti_A          168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDV  247 (391)
T ss_dssp             HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHH
T ss_pred             cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHh
Confidence               356667777778899999999999999999999999999988776554 4557789999999989999888776665


Q ss_pred             hCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        176 FLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       176 ~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      . ..+++||||+++..  .+ ..|...|+++..+||+|++++|...+..|
T Consensus       248 ~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f  296 (391)
T 1xti_A          248 L-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQF  296 (391)
T ss_dssp             S-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred             c-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Confidence            4 56899999999977  78 99999999999999999999999887654

>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A

Probab=99.86  E-value=1.2e-20  Score=163.16  Aligned_cols=165  Identities=24%  Similarity=0.338  Sum_probs=143.1

Q ss_pred             CCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------------
Q psy17636         56 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------   99 (222)
Q Consensus        56 ~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------   99 (222)
                      +..+|++++|++.++++|.++||..|+|+|.++|+.+++|+|++                                    
T Consensus        19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~   98 (400)
T 1s2m_A           19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT   98 (400)
T ss_dssp             --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred             ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence            35689999999999999999999999999999999999999988                                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~  178 (400)
T 1s2m_A           99 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR  178 (400)
T ss_dssp             HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSH
T ss_pred             HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhh
Confidence                                                                                            


Q ss_pred             --HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC
Q psy17636        100 --EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL  177 (222)
Q Consensus       100 --~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~  177 (222)
                        ...+..++..+++..|++++|||++..+.+....++.+|..+.+... ....++.+++..++...|...|..++.. .
T Consensus       179 ~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~~~~-~  256 (400)
T 1s2m_A          179 DFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQKLHCLNTLFSK-L  256 (400)
T ss_dssp             HHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGGHHHHHHHHHHH-S
T ss_pred             chHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhhHHHHHHHHHhh-c
Confidence              45677777778889999999999999999999999999988765433 4567899999999888898888766654 4


Q ss_pred             CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        178 STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ..+++||||+++..  .+ ..|...|+.+..+||+|++++|...+..|
T Consensus       257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f  304 (400)
T 1s2m_A          257 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEF  304 (400)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHH
Confidence            56799999999976  78 99999999999999999999999887654

>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*

Probab=99.84  E-value=5.2e-21  Score=164.63  Aligned_cols=170  Identities=20%  Similarity=0.305  Sum_probs=86.2

Q ss_pred             CCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------
Q psy17636         52 DPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------------------------------   99 (222)
Q Consensus        52 ~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------------------------------   99 (222)
                      +...+..+|+++++++.+.++|.+.||..|+|+|.++|+.+++|+|++                                
T Consensus        15 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~li   94 (394)
T 1fuu_A           15 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALM   94 (394)
T ss_dssp             SSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEE
T ss_pred             hcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEE
Confidence            456677899999999999999999999999999999999999999988                                


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        95 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~  174 (394)
T 1fuu_A           95 LAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM  174 (394)
T ss_dssp             ECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH
T ss_pred             EcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHh
Confidence                                                                                            


Q ss_pred             -----HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCc-hHHHHHHHH
Q psy17636        100 -----EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQ-KLTWLTHNL  173 (222)
Q Consensus       100 -----~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~-K~~~L~~~l  173 (222)
                           ...+..++..+++.+|++++|||++..+.+++..++.+|..+.+........++.+.+..+...+ |...|..++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  254 (394)
T 1fuu_A          175 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLY  254 (394)
T ss_dssp             HHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------
T ss_pred             hCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHH
Confidence                 45677888888889999999999999999999999999999988777677778888888887744 777675555


Q ss_pred             HhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        174 VEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       174 ~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .. ...+++||||+++..  .+ ..|+..|+.+..+||+|++.+|...+..|
T Consensus       255 ~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f  305 (394)
T 1fuu_A          255 DS-ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEF  305 (394)
T ss_dssp             ----------------------------------------------------
T ss_pred             hc-CCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHH
Confidence            43 345799999999876  78 99999999999999999999999988765

>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19

Probab=99.82  E-value=2.1e-19  Score=152.83  Aligned_cols=160  Identities=23%  Similarity=0.292  Sum_probs=139.4

Q ss_pred             CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCC-CCCC------------------------------------
Q psy17636         57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG-RDII------------------------------------   99 (222)
Q Consensus        57 ~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g-~dvi------------------------------------   99 (222)
                      .++|+++++++.++++|.++||..|+|+|.++|+.+++| ++++                                    
T Consensus         5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~   84 (367)
T 1hv8_A            5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTR   84 (367)
T ss_dssp             CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCH
T ss_pred             cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCH
Confidence            468999999999999999999999999999999999988 6877                                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        85 ~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~  164 (367)
T 1hv8_A           85 ELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGF  164 (367)
T ss_dssp             HHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhch
Confidence                                                                                            


Q ss_pred             HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCC
Q psy17636        100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLST  179 (222)
Q Consensus       100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~  179 (222)
                      ...+..++..++++.|++++|||++..+..++..++.++..+...    ...++.+.++.+...+|...|...+.  ...
T Consensus       165 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~  238 (367)
T 1hv8_A          165 IKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK----INANIEQSYVEVNENERFEALCRLLK--NKE  238 (367)
T ss_dssp             HHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC----SSSSSEEEEEECCGGGHHHHHHHHHC--STT
T ss_pred             HHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec----CCCCceEEEEEeChHHHHHHHHHHHh--cCC
Confidence            456777788888899999999999999999999999988777543    34478899999988999988877665  245


Q ss_pred             CeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        180 GSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       180 ~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      +++||||+++..  .+ ..|...|+.+..+||+|++.+|...+..|
T Consensus       239 ~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f  284 (367)
T 1hv8_A          239 FYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLF  284 (367)
T ss_dssp             CCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHH
T ss_pred             CcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHH
Confidence            799999999977  88 99999999999999999999999887653

>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A

Probab=99.81  E-value=1.5e-19  Score=146.95  Aligned_cols=116  Identities=44%  Similarity=0.673  Sum_probs=106.9

Q ss_pred             cCCHHHHHHHHHHcCCEEecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-----------
Q psy17636         31 RLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-----------   99 (222)
Q Consensus        31 ~~~~~~~~~~~~~~~i~v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-----------   99 (222)
                      .+++++++.+++.+++.+.|.++|.|+.+|+++++++.++++|.+.||..|||+|.++||.+++|+|++           
T Consensus         2 ~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~   81 (242)
T 3fe2_A            2 MRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTL   81 (242)
T ss_dssp             ----CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHH
T ss_pred             CCCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHH
Confidence            457789999999999999999999999999999999999999999999999999999999999999998           


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        82 ~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~  161 (242)
T 3fe2_A           82 SYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPG  161 (242)
T ss_dssp             HHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHH
T ss_pred             HHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHH
Confidence                                                                                            


Q ss_pred             --------------------------------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCC
Q psy17636        100 --------------------------------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDI  146 (222)
Q Consensus       100 --------------------------------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~  146 (222)
                                                      .+++..|++.+++++|+++||||+|+.++++++.++++|+.|.++..
T Consensus       162 ~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~  240 (242)
T 3fe2_A          162 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL  240 (242)
T ss_dssp             HHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred             HHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence                                            67788899999999999999999999999999999999999998764

>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}

Probab=99.78  E-value=1e-18  Score=158.70  Aligned_cols=123  Identities=22%  Similarity=0.252  Sum_probs=90.6

Q ss_pred             HHHHHHHHhhCC-------CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCC----CCCCCCeeEEEEEcCC-CchHH
Q psy17636        100 EPQVRSICDHVR-------PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDI----GEANTDITQVVINLPQ-TQKLT  167 (222)
Q Consensus       100 ~~~l~~Il~~~~-------~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~----~~~~~~i~q~~~~~~~-~~K~~  167 (222)
                      .+++..|+..++       .++|+++||||+++.+..++..++.++..+.+...    ......+.+.+..++. ..+..
T Consensus       193 ~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  272 (579)
T 3sqw_A          193 RDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIF  272 (579)
T ss_dssp             HHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHH
T ss_pred             HHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHH
Confidence            345555555442       36799999999999999999999998877655432    2455678888888876 33332


Q ss_pred             HH----HHHHHhhCCCCeEEEEecccHH--HH-HHhHHC---CceEEEecCCCCCChHHHhhcCC
Q psy17636        168 WL----THNLVEFLSTGSLLIFVTKKCF--EL-VNLIAK---NYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       168 ~L----~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~---g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .+    ...+.......++||||+|+..  .+ ..|...   |+.+..+||+|++.+|...+..|
T Consensus       273 ~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F  337 (579)
T 3sqw_A          273 AAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRF  337 (579)
T ss_dssp             HHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHh
Confidence            23    2333333445799999999976  77 888776   99999999999999999988654

>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A

Probab=99.76  E-value=1.1e-18  Score=157.59  Aligned_cols=123  Identities=22%  Similarity=0.249  Sum_probs=89.9

Q ss_pred             HHHHHHHHhhC-------CCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCC----CCCCCCeeEEEEEcCC-CchHH
Q psy17636        100 EPQVRSICDHV-------RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDI----GEANTDITQVVINLPQ-TQKLT  167 (222)
Q Consensus       100 ~~~l~~Il~~~-------~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~----~~~~~~i~q~~~~~~~-~~K~~  167 (222)
                      .+++..|+..+       +.++|+++||||++..+..++..++.++..+.+...    ......+.+.+..++. ..+..
T Consensus       244 ~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (563)
T 3i5x_A          244 RDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIF  323 (563)
T ss_dssp             HHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHH
T ss_pred             HHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHH
Confidence            34445555443       236799999999999999999999998876655332    2455678888888776 33333


Q ss_pred             HHHH----HHHhhCCCCeEEEEecccHH--HH-HHhHHC---CceEEEecCCCCCChHHHhhcCC
Q psy17636        168 WLTH----NLVEFLSTGSLLIFVTKKCF--EL-VNLIAK---NYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       168 ~L~~----~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~---g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .++.    .+......+++||||+|+..  .+ ..|...   |+.+..+||+|++.+|...+..|
T Consensus       324 ~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f  388 (563)
T 3i5x_A          324 AAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRF  388 (563)
T ss_dssp             HHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHH
Confidence            3333    23333446799999999976  77 888776   99999999999999999988654

>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}

Probab=99.70  E-value=1.5e-16  Score=129.13  Aligned_cols=111  Identities=31%  Similarity=0.502  Sum_probs=100.2

Q ss_pred             HHHHHHHHcCCEEecCCCCCCCCCcCCC----CCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------
Q psy17636         36 EAQELRAKSGITVSGADPPYPVSSFGHF----GFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------   99 (222)
Q Consensus        36 ~~~~~~~~~~i~v~g~~~p~~~~~f~~l----~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------   99 (222)
                      +++.+|+++++.+.|.++|.|+.+|+++    ++++.++++|.++||..|||+|.++||.+++|+|++            
T Consensus         3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~   82 (245)
T 3dkp_A            3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA   82 (245)
T ss_dssp             HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred             hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence            5788999999999999999999999997    899999999999999999999999999999999988            


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        83 ~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~  162 (245)
T 3dkp_A           83 FSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIY  162 (245)
T ss_dssp             HHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHH
T ss_pred             HHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHH
Confidence                                                                                            


Q ss_pred             ---------------------------------HHHHHHHHhhC-CCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCC
Q psy17636        100 ---------------------------------EPQVRSICDHV-RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGD  145 (222)
Q Consensus       100 ---------------------------------~~~l~~Il~~~-~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~  145 (222)
                                                       .+++..++..+ +.+.|+++||||+|++++++++.++++|+.|.++.
T Consensus       163 ~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~  242 (245)
T 3dkp_A          163 LLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA  242 (245)
T ss_dssp             HHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred             HHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence                                             34566666665 45789999999999999999999999999999876


Q ss_pred             C
Q psy17636        146 I  146 (222)
Q Consensus       146 ~  146 (222)
                      .
T Consensus       243 ~  243 (245)
T 3dkp_A          243 R  243 (245)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*

Probab=99.70  E-value=2e-16  Score=142.23  Aligned_cols=159  Identities=15%  Similarity=0.159  Sum_probs=121.2

Q ss_pred             CCCcCCCCCCHHHHHHHHH-CCCCCCCHHHHhHHHHHhCCCCCC------------------------------------
Q psy17636         57 VSSFGHFGFDEVLMKALRK-CEYTSPTPIQAQAVPAALSGRDII------------------------------------   99 (222)
Q Consensus        57 ~~~f~~l~l~~~l~~~l~~-~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------   99 (222)
                      +.+|++++|++.+.+.|++ .||..|+|+|.++|+.+++|+|++                                    
T Consensus         1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q   80 (523)
T 1oyw_A            1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKD   80 (523)
T ss_dssp             CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHH
T ss_pred             CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHH
Confidence            3579999999999999998 699999999999999999999988                                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        81 ~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~  160 (523)
T 1oyw_A           81 QVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP  160 (523)
T ss_dssp             HHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCH
T ss_pred             HHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHH
Confidence                                                                                            


Q ss_pred             -HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhc--CCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhh
Q psy17636        100 -EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVL--TDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEF  176 (222)
Q Consensus       100 -~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l--~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~  176 (222)
                       ...+..+.... ++.+++++|||.+..+..-....+  .+|..+ +...  ...++.  +..++..++...|+.++...
T Consensus       161 ~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~--~r~~l~--~~v~~~~~~~~~l~~~l~~~  234 (523)
T 1oyw_A          161 EYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSF--DRPNIR--YMLMEKFKPLDQLMRYVQEQ  234 (523)
T ss_dssp             HHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECCC--CCTTEE--EEEEECSSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCCC--CCCceE--EEEEeCCCHHHHHHHHHHhc
Confidence             11122233333 358899999999988766444443  456544 3222  234454  34445567777787877654


Q ss_pred             CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        177 LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       177 ~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                       ..+++||||+|+..  .+ ..|...|+++..+||+|++++|...+..|
T Consensus       235 -~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f  282 (523)
T 1oyw_A          235 -RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKF  282 (523)
T ss_dssp             -TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred             -CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHH
Confidence             45799999999977  88 99999999999999999999999987654

>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*

Probab=99.69  E-value=1.5e-16  Score=144.81  Aligned_cols=110  Identities=12%  Similarity=-0.022  Sum_probs=80.8

Q ss_pred             CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC--CchHHHHHHHHHhhCCCCeEEEEeccc
Q psy17636        112 PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ--TQKLTWLTHNLVEFLSTGSLLIFVTKK  189 (222)
Q Consensus       112 ~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~--~~K~~~L~~~l~~~~~~~~~IVF~nt~  189 (222)
                      ++.|+++||||++..+...+..++..+..+.+.. .....++...+...+.  .++...|..++......+++||||+|+
T Consensus       199 ~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr  277 (591)
T 2v1x_A          199 PNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQ  277 (591)
T ss_dssp             TTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSH
T ss_pred             CCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcH
Confidence            3679999999999999888888877443222222 2334566555444433  234555666665544567999999999


Q ss_pred             HH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        190 CF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       190 ~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ..  .+ ..|...|+.+..+||+|++++|...+..|
T Consensus       278 ~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F  313 (591)
T 2v1x_A          278 KDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKW  313 (591)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHH
Confidence            77  88 99999999999999999999999988654

>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}

Probab=99.66  E-value=1.7e-15  Score=127.31  Aligned_cols=148  Identities=19%  Similarity=0.284  Sum_probs=121.9

Q ss_pred             CCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC---------------------------------------------
Q psy17636         65 FDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII---------------------------------------------   99 (222)
Q Consensus        65 l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi---------------------------------------------   99 (222)
                      |++.|.++|+++||..|+|+|.++|+.+++|+|++                                             
T Consensus         1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~   80 (337)
T 2z0m_A            1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDIG   80 (337)
T ss_dssp             CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999988                                             


Q ss_pred             ------------------------------------------------------------------HHHHHHHHhhCCCC
Q psy17636        100 ------------------------------------------------------------------EPQVRSICDHVRPN  113 (222)
Q Consensus       100 ------------------------------------------------------------------~~~l~~Il~~~~~~  113 (222)
                                                                                        ...+..++...+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~  160 (337)
T 2z0m_A           81 RYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNR  160 (337)
T ss_dssp             TTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTC
T ss_pred             hhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcc
Confidence                                                                              46677788888888


Q ss_pred             CeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--
Q psy17636        114 RQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--  191 (222)
Q Consensus       114 ~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--  191 (222)
                      .|++++|||++..+.+....++.++..+...   ....++.+.++.++...+..  +..+.. ...+++||||+++..  
T Consensus       161 ~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~lvf~~~~~~~~  234 (337)
T 2z0m_A          161 KITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRSK--VQALRE-NKDKGVIVFVRTRNRVA  234 (337)
T ss_dssp             SEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSHHH--HHHHHT-CCCSSEEEECSCHHHHH
T ss_pred             cEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHHHH--HHHHHh-CCCCcEEEEEcCHHHHH
Confidence            9999999999999999999999988877432   34567888888887765443  243433 346799999999976  


Q ss_pred             HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        192 EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       192 ~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .+ ..|.    ++..+||+|++.+|...+..|
T Consensus       235 ~l~~~l~----~~~~~~~~~~~~~r~~~~~~f  262 (337)
T 2z0m_A          235 KLVRLFD----NAIELRGDLPQSVRNRNIDAF  262 (337)
T ss_dssp             HHHTTCT----TEEEECTTSCHHHHHHHHHHH
T ss_pred             HHHHHhh----hhhhhcCCCCHHHHHHHHHHH
Confidence            66 6665    688999999999999887654

>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19

Probab=99.65  E-value=1.1e-16  Score=130.58  Aligned_cols=115  Identities=39%  Similarity=0.634  Sum_probs=92.9

Q ss_pred             HcCCEEecCCCCC--CCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC---------------------
Q psy17636         43 KSGITVSGADPPY--PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII---------------------   99 (222)
Q Consensus        43 ~~~i~v~g~~~p~--~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi---------------------   99 (222)
                      +..+.+.|.+.|.  ++.+|+++++++.++++|.++||..|||+|.++||.+++|+|++                     
T Consensus         6 ~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l   85 (253)
T 1wrb_A            6 SIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHL   85 (253)
T ss_dssp             CCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             hCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHH
Confidence            3467889999988  89999999999999999999999999999999999999999988                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        86 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l  165 (253)
T 1wrb_A           86 VCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFI  165 (253)
T ss_dssp             HTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHH
T ss_pred             HhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------HHHHHHHHhh--CCC--CCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCC
Q psy17636        100 --------------------------EPQVRSICDH--VRP--NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEA  149 (222)
Q Consensus       100 --------------------------~~~l~~Il~~--~~~--~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~  149 (222)
                                                .+++..|+..  ++.  ++|+++||||++.+++++++.++.+|+.|.++..+..
T Consensus       166 ~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~  245 (253)
T 1wrb_A          166 EKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGST  245 (253)
T ss_dssp             HTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-----
T ss_pred             HcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCC
Confidence                                      5678888884  344  7899999999999999999999999999999988888


Q ss_pred             CCCeeEEE
Q psy17636        150 NTDITQVV  157 (222)
Q Consensus       150 ~~~i~q~~  157 (222)
                      ..+|+|++
T Consensus       246 ~~~i~q~~  253 (253)
T 1wrb_A          246 SDSIKQEI  253 (253)
T ss_dssp             --------
T ss_pred             cCCceecC
Confidence            88888864

>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}

Probab=99.65  E-value=1.1e-15  Score=128.17  Aligned_cols=101  Identities=32%  Similarity=0.465  Sum_probs=90.8

Q ss_pred             CCEEecCCCCCC---CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCC--CCCC--------------------
Q psy17636         45 GITVSGADPPYP---VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDII--------------------   99 (222)
Q Consensus        45 ~i~v~g~~~p~~---~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g--~dvi--------------------   99 (222)
                      .+.+.+.+.+.|   +.+|++++|++.++++|.++||..|||+|.++||.++.|  +|++                    
T Consensus        76 ~v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~  155 (300)
T 3fmo_B           76 QVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ  155 (300)
T ss_dssp             CEEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHh
Confidence            466777776665   578999999999999999999999999999999999998  9988                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       156 l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~  235 (300)
T 3fmo_B          156 VEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKK  235 (300)
T ss_dssp             CCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred             hhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence                                                                                            


Q ss_pred             ------------------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCC
Q psy17636        100 ------------------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGD  145 (222)
Q Consensus       100 ------------------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~  145 (222)
                                        .+++..|+..+++++|+++||||++..+..++..++.+|+.|.+..
T Consensus       236 l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~  299 (300)
T 3fmo_B          236 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR  299 (300)
T ss_dssp             CSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred             ceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence                              4667788888899999999999999999999999999999998754

>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*

Probab=99.59  E-value=5.8e-15  Score=119.38  Aligned_cols=97  Identities=24%  Similarity=0.440  Sum_probs=83.7

Q ss_pred             EecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC----------------------------
Q psy17636         48 VSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII----------------------------   99 (222)
Q Consensus        48 v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi----------------------------   99 (222)
                      +.+.+.|.++.+|+++++++.++++|.+.||..|||+|.++||.+++|+|++                            
T Consensus        20 ~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~   99 (237)
T 3bor_A           20 VIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKET   99 (237)
T ss_dssp             -------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSC
T ss_pred             cccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCc
Confidence            3455678889999999999999999999999999999999999999999988                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       100 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi  179 (237)
T 3bor_A          100 QALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL  179 (237)
T ss_dssp             CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred             eEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence                                                                                            


Q ss_pred             -----------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeC
Q psy17636        100 -----------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQG  144 (222)
Q Consensus       100 -----------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~  144 (222)
                                 ...+..|++.++.++|+++||||+|++++++++.++++|+.|.++
T Consensus       180 DEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~  235 (237)
T 3bor_A          180 DEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK  235 (237)
T ss_dssp             ESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred             CCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence                       567888888898899999999999999999999999999998765

>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}

Probab=99.58  E-value=4.8e-15  Score=118.92  Aligned_cols=94  Identities=39%  Similarity=0.571  Sum_probs=88.0

Q ss_pred             cCCCCCCCCCcCC-CCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-----------------------------
Q psy17636         50 GADPPYPVSSFGH-FGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-----------------------------   99 (222)
Q Consensus        50 g~~~p~~~~~f~~-l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-----------------------------   99 (222)
                      +..+|.|+.+|++ +++++.++++|.+.||.+|||+|.++||.+++|+|++                             
T Consensus        11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~   90 (228)
T 3iuy_A           11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE   90 (228)
T ss_dssp             CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred             cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence            4578999999999 7999999999999999999999999999999999998                             


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~  170 (228)
T 3iuy_A           91 QRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITY  170 (228)
T ss_dssp             --CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCE
T ss_pred             ccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceE
Confidence                                                                                            


Q ss_pred             --------------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEe
Q psy17636        100 --------------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQ  143 (222)
Q Consensus       100 --------------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v  143 (222)
                                    .+.+..|+..+++++|+++||||+|+.+++++..++++|+.|.|
T Consensus       171 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v  228 (228)
T 3iuy_A          171 LVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV  228 (228)
T ss_dssp             EEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred             EEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence                          67788899999999999999999999999999999999998864

>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}

Probab=99.54  E-value=5.5e-14  Score=113.24  Aligned_cols=107  Identities=27%  Similarity=0.401  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHcCCEEecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------
Q psy17636         34 PQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------------   99 (222)
Q Consensus        34 ~~~~~~~~~~~~i~v~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------------   99 (222)
                      +++.+.+++.+.-     ..+.++.+|+++++++.++++|.+.||..|||+|.++||.+++|+|++              
T Consensus         6 ~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~   80 (236)
T 2pl3_A            6 RESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL   80 (236)
T ss_dssp             HHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred             HhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence            4566677766543     124567899999999999999999999999999999999999999988              


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        81 ~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~  160 (236)
T 2pl3_A           81 VPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQH  160 (236)
T ss_dssp             HHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHH
T ss_pred             HHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHH
Confidence                                                                                            


Q ss_pred             ----------------------------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCC
Q psy17636        100 ----------------------------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGD  145 (222)
Q Consensus       100 ----------------------------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~  145 (222)
                                                  ...+..++..+++++|+++||||++..++++++.++.+|..|.++.
T Consensus       161 l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~  234 (236)
T 2pl3_A          161 MDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE  234 (236)
T ss_dssp             HHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred             HHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence                                        5678888888999999999999999999999999999999998754

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=99.53  E-value=4e-14  Score=113.01  Aligned_cols=97  Identities=22%  Similarity=0.416  Sum_probs=86.5

Q ss_pred             cCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------
Q psy17636         50 GADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------   99 (222)
Q Consensus        50 g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------   99 (222)
                      ..+.|+++.+|+++++++.+++.|.+.||..|+|+|.++|+.+++|+|++                              
T Consensus         6 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~   85 (224)
T 1qde_A            6 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQA   85 (224)
T ss_dssp             CBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCE
T ss_pred             ccccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceE
Confidence            34567888999999999999999999999999999999999999999988                              


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah  165 (224)
T 1qde_A           86 LMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD  165 (224)
T ss_dssp             EEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred             EEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh
Confidence                                                                                            


Q ss_pred             -------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCC
Q psy17636        100 -------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDI  146 (222)
Q Consensus       100 -------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~  146 (222)
                             ...+..++..+++++|++++|||++..++++++.++++|+.|.+...
T Consensus       166 ~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~  219 (224)
T 1qde_A          166 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD  219 (224)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred             HHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence                   56688888888899999999999999999999999999999977654

>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*

Probab=99.52  E-value=3.3e-14  Score=114.36  Aligned_cols=96  Identities=22%  Similarity=0.379  Sum_probs=81.1

Q ss_pred             ecCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-----------------------------
Q psy17636         49 SGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-----------------------------   99 (222)
Q Consensus        49 ~g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-----------------------------   99 (222)
                      .++..|.+..+|+++++++.+.++|.++||..|||+|.++||.+++|+|++                             
T Consensus        15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~   94 (230)
T 2oxc_A           15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQ   94 (230)
T ss_dssp             ---------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCC
T ss_pred             cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCce
Confidence            355667788999999999999999999999999999999999999999988                             


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        95 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDE  174 (230)
T 2oxc_A           95 ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDE  174 (230)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESS
T ss_pred             EEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCC
Confidence                                                                                            


Q ss_pred             ----------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeC
Q psy17636        100 ----------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQG  144 (222)
Q Consensus       100 ----------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~  144 (222)
                                .+++..|++.++.++|+++||||+|+++.+++..++++|+.|.++
T Consensus       175 ah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~  229 (230)
T 2oxc_A          175 ADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLN  229 (230)
T ss_dssp             HHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred             chHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence                      567778888899899999999999999999999999999988653

>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A

Probab=99.50  E-value=6.4e-15  Score=136.82  Aligned_cols=61  Identities=8%  Similarity=-0.106  Sum_probs=49.5

Q ss_pred             EEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHH
Q psy17636        157 VINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPS  217 (222)
Q Consensus       157 ~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~  217 (222)
                      ++++...+|...|...+.... ...++||||+|+..  .| ..|...|+++.+|||++.+++|+-
T Consensus       409 ~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~i  473 (844)
T 1tf5_A          409 LIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQI  473 (844)
T ss_dssp             EEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHH
T ss_pred             EEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHH
Confidence            455666789998888776532 34689999999966  88 999999999999999988777754

>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19

Probab=99.50  E-value=7.7e-14  Score=111.23  Aligned_cols=90  Identities=23%  Similarity=0.480  Sum_probs=82.2

Q ss_pred             CCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------------
Q psy17636         56 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------   99 (222)
Q Consensus        56 ~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------   99 (222)
                      |.++|+++++++.++++|.++||..|||+|.++||.+++|+|++                                    
T Consensus         2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt   81 (219)
T 1q0u_A            2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPT   81 (219)
T ss_dssp             --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred             CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCc
Confidence            35789999999999999999999999999999999999999998                                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~  161 (219)
T 1q0u_A           82 RELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL  161 (219)
T ss_dssp             HHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH
T ss_pred             HHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchH
Confidence                                                                                            


Q ss_pred             ------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCC
Q psy17636        100 ------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGD  145 (222)
Q Consensus       100 ------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~  145 (222)
                            ...+..|+..+++++|+++||||+|.++.++++.++++|..|.+..
T Consensus       162 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~  213 (219)
T 1q0u_A          162 MLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE  213 (219)
T ss_dssp             HHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred             HhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence                  5678889999988999999999999999999999999999987754

>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}

Probab=99.50  E-value=8.1e-14  Score=113.64  Aligned_cols=89  Identities=40%  Similarity=0.661  Sum_probs=83.3

Q ss_pred             CCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------------
Q psy17636         56 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------   99 (222)
Q Consensus        56 ~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------   99 (222)
                      +..+|+++++++.++++|.++||..|||+|.++||.+++|+|++                                    
T Consensus        41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Pt  120 (249)
T 3ber_A           41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPT  120 (249)
T ss_dssp             HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSS
T ss_pred             ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCC
Confidence            46789999999999999999999999999999999999999988                                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       121 r~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~  200 (249)
T 3ber_A          121 RELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILN  200 (249)
T ss_dssp             HHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhc
Confidence                                                                                            


Q ss_pred             ---HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeC
Q psy17636        100 ---EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQG  144 (222)
Q Consensus       100 ---~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~  144 (222)
                         ...+..|+..+++++|+++||||++..++++++.++++|+.|.++
T Consensus       201 ~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~  248 (249)
T 3ber_A          201 MDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS  248 (249)
T ss_dssp             TTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred             cChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence               567888888898899999999999999999999999999998764

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=99.49  E-value=1.7e-13  Score=107.80  Aligned_cols=87  Identities=39%  Similarity=0.602  Sum_probs=81.2

Q ss_pred             CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636         58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------------------------------------   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------------------------------------   99 (222)
                      ++|+++++++.++++|.+.||..|+|+|.++|+.+++|+|++                                      
T Consensus         1 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P   80 (207)
T 2gxq_A            1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTP   80 (207)
T ss_dssp             CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECS
T ss_pred             CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEEC
Confidence            479999999999999999999999999999999999999988                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        81 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~  160 (207)
T 2gxq_A           81 TRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMG  160 (207)
T ss_dssp             SHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccc
Confidence                                                                                            


Q ss_pred             -HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeC
Q psy17636        100 -EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQG  144 (222)
Q Consensus       100 -~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~  144 (222)
                       ...+..++..+++++|++++|||+|+.++++++.++++|+.|.+.
T Consensus       161 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~  206 (207)
T 2gxq_A          161 FEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI  206 (207)
T ss_dssp             CHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred             hHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence             567888888888899999999999999999999999999998764

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19

Probab=99.47  E-value=2.6e-13  Score=106.78  Aligned_cols=84  Identities=33%  Similarity=0.577  Sum_probs=79.3

Q ss_pred             CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636         58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------------------------------------   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------------------------------------   99 (222)
                      ++|+++++++.++++|.++||..|+|+|.++|+.+++|+|++                                      
T Consensus         3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~   82 (206)
T 1vec_A            3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE   82 (206)
T ss_dssp             SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred             CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence            579999999999999999999999999999999999999988                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~  162 (206)
T 1vec_A           83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD  162 (206)
T ss_dssp             HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred             HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC
Confidence                                                                                            


Q ss_pred             -HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEE
Q psy17636        100 -EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI  141 (222)
Q Consensus       100 -~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i  141 (222)
                       ...+..++..+++++|+++||||+|..+.++++.++++|+.|
T Consensus       163 ~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i  205 (206)
T 1vec_A          163 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI  205 (206)
T ss_dssp             THHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred             cHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence             677888888888899999999999999999999999999876

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19

Probab=99.46  E-value=2.2e-13  Score=108.52  Aligned_cols=94  Identities=28%  Similarity=0.552  Sum_probs=79.6

Q ss_pred             cCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------
Q psy17636         50 GADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------   99 (222)
Q Consensus        50 g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------   99 (222)
                      |...+.+..+|+++++++.++++|.++||..|+|+|.++|+.+++|+|++                              
T Consensus         6 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~   85 (220)
T 1t6n_A            6 GSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSV   85 (220)
T ss_dssp             --------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCE
T ss_pred             CCcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEE
Confidence            33334445679999999999999999999999999999999999999988                              


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD  165 (220)
T 1t6n_A           86 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILD  165 (220)
T ss_dssp             EEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred             EEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEc
Confidence                                                                                            


Q ss_pred             -----------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEe
Q psy17636        100 -----------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQ  143 (222)
Q Consensus       100 -----------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v  143 (222)
                                 ...+..+++.+++++|+++||||++..++++++.++.+|+.|.+
T Consensus       166 Eah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~v  220 (220)
T 1t6n_A          166 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV  220 (220)
T ss_dssp             SHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred             CHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEeC
Confidence                       35677788888889999999999999999999999999998753

>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}

Probab=99.43  E-value=8.1e-13  Score=122.65  Aligned_cols=43  Identities=16%  Similarity=0.275  Sum_probs=40.5

Q ss_pred             CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHH-HhCCCCCC
Q psy17636         57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPA-ALSGRDII   99 (222)
Q Consensus        57 ~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~-il~g~dvi   99 (222)
                      .++|++++|++.+.+.+.+.||..|+|+|.++|+. +++|++++
T Consensus         7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~l   50 (715)
T 2va8_A            7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLL   50 (715)
T ss_dssp             CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEE
T ss_pred             cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEE
Confidence            47899999999999999999999999999999999 78899988

>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}

Probab=99.42  E-value=2.8e-13  Score=130.94  Aligned_cols=162  Identities=11%  Similarity=0.067  Sum_probs=117.4

Q ss_pred             CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636         58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------------------------------------   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------------------------------------   99 (222)
                      ..|..+++++.+...+...++..|||+|.++|+.++.|+|++                                      
T Consensus       162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~  241 (1108)
T 3l9o_A          162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSN  241 (1108)
T ss_dssp             SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHH
Confidence            467788888888888878888899999999999999999998                                      


Q ss_pred             ------------------------------------------------------------------HHHHHHHHhhCCCC
Q psy17636        100 ------------------------------------------------------------------EPQVRSICDHVRPN  113 (222)
Q Consensus       100 ------------------------------------------------------------------~~~l~~Il~~~~~~  113 (222)
                                                                                        ...+..++..++++
T Consensus       242 Q~~~~l~~~~~~VglltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~  321 (1108)
T 3l9o_A          242 QKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK  321 (1108)
T ss_dssp             HHHHHHHHHTSSEEEECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHhCCccEEeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCC
Confidence                                                                              55688889999999


Q ss_pred             CeEEEEccccchH--HHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCC-----------------------------
Q psy17636        114 RQTLLFSATFKKR--IEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQ-----------------------------  162 (222)
Q Consensus       114 ~Q~~lfSAT~~~~--v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-----------------------------  162 (222)
                      .|+++||||+|..  +.........+|..+......  +..+.++++....                             
T Consensus       322 ~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~  399 (1108)
T 3l9o_A          322 VRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQI  399 (1108)
T ss_dssp             SEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC--SSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC----
T ss_pred             ceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhh
Confidence            9999999999764  446666667777766554432  2334544433211                             


Q ss_pred             --------------------------CchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCce-----------
Q psy17636        163 --------------------------TQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYW-----------  202 (222)
Q Consensus       163 --------------------------~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~-----------  202 (222)
                                                ..+...++..+.. .+.+++||||+++..  .+ ..|...|+.           
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~-~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~  478 (1108)
T 3l9o_A          400 GDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKI  478 (1108)
T ss_dssp             -------------------------CHHHHHHHHHHHHH-TTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHH
T ss_pred             cccccccccccccccccccccccccchhHHHHHHHHHHh-cCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence                                      1112223333333 235699999999866  66 777554443           


Q ss_pred             ----------------------------EEEecCCCCCChHHHhhcCC
Q psy17636        203 ----------------------------LIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       203 ----------------------------~~~lHg~~~q~~R~~~L~~~  222 (222)
                                                  ++.+||+|++.+|+..+.+|
T Consensus       479 ~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F  526 (1108)
T 3l9o_A          479 FNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILF  526 (1108)
T ss_dssp             GGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHH
T ss_pred             HHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHH
Confidence                                        79999999999999988764

>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*

Probab=99.41  E-value=2.6e-13  Score=126.09  Aligned_cols=42  Identities=24%  Similarity=0.339  Sum_probs=39.8

Q ss_pred             CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHH-HhCCCCCC
Q psy17636         58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPA-ALSGRDII   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~-il~g~dvi   99 (222)
                      ++|++++|++.+.+.+++.||..|+|+|.++|+. +++|++++
T Consensus         1 ~~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~l   43 (720)
T 2zj8_A            1 MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNAL   43 (720)
T ss_dssp             CBGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEE
T ss_pred             CcHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEE
Confidence            4699999999999999999999999999999998 88999988

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=99.41  E-value=2e-12  Score=121.09  Aligned_cols=159  Identities=13%  Similarity=0.141  Sum_probs=116.2

Q ss_pred             CCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCC-CCC-----------------------------------
Q psy17636         56 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGR-DII-----------------------------------   99 (222)
Q Consensus        56 ~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~-dvi-----------------------------------   99 (222)
                      ++.+|.++++++.+.+.+...| ..|+++|+++|+.++.+. +++                                   
T Consensus        70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P  148 (773)
T 2xau_A           70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQP  148 (773)
T ss_dssp             SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEES
T ss_pred             CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCc
Confidence            4678999999999999999988 899999999999988665 454                                   


Q ss_pred             -------------------------------------------------------------------------------H
Q psy17636        100 -------------------------------------------------------------------------------E  100 (222)
Q Consensus       100 -------------------------------------------------------------------------------~  100 (222)
                                                                                                     .
T Consensus       149 ~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~  228 (773)
T 2xau_A          149 RRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILM  228 (773)
T ss_dssp             CHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHH
Confidence                                                                                           1


Q ss_pred             HHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHh---hC
Q psy17636        101 PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVE---FL  177 (222)
Q Consensus       101 ~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~---~~  177 (222)
                      ..+..|... .++.|++++|||++.  +.++ .++.++..+.+...   ...++++|..++..++....+..+..   ..
T Consensus       229 ~~l~~l~~~-~~~~~iIl~SAT~~~--~~l~-~~~~~~~vi~v~gr---~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~  301 (773)
T 2xau_A          229 GLLKQVVKR-RPDLKIIIMSATLDA--EKFQ-RYFNDAPLLAVPGR---TYPVELYYTPEFQRDYLDSAIRTVLQIHATE  301 (773)
T ss_dssp             HHHHHHHHH-CTTCEEEEEESCSCC--HHHH-HHTTSCCEEECCCC---CCCEEEECCSSCCSCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHh-CCCceEEEEeccccH--HHHH-HHhcCCCcccccCc---ccceEEEEecCCchhHHHHHHHHHHHHHHhc
Confidence            233344333 357899999999964  3444 45665555655433   23577777766666655443333332   23


Q ss_pred             CCCeEEEEecccHH--HH-HHhHH-----------CCceEEEecCCCCCChHHHhhcCC
Q psy17636        178 STGSLLIFVTKKCF--EL-VNLIA-----------KNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       178 ~~~~~IVF~nt~~~--~l-~~L~~-----------~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ..+++||||+++.+  .+ ..|..           .|+.+..+||+|++++|...+..|
T Consensus       302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f  360 (773)
T 2xau_A          302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPA  360 (773)
T ss_dssp             CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhc
Confidence            46899999999976  66 77764           689999999999999999998765

>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}

Probab=99.36  E-value=5.3e-13  Score=104.74  Aligned_cols=90  Identities=19%  Similarity=0.175  Sum_probs=62.7

Q ss_pred             HHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEec
Q psy17636        131 ARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAV  207 (222)
Q Consensus       131 ~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lH  207 (222)
                      ...|+.+|+.|.++..+.++.+|.|.++.++..+|...|.++|...  .+++||||+++..  .+ ..|...|+++..+|
T Consensus         8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh   85 (191)
T 2p6n_A            8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH   85 (191)
T ss_dssp             --------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred             cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence            4578999999999888888899999999999999999998877653  4689999999976  88 99999999999999


Q ss_pred             CCCCCChHHHhhcCC
Q psy17636        208 GILMCPKSPSRLSLV  222 (222)
Q Consensus       208 g~~~q~~R~~~L~~~  222 (222)
                      |+|++.+|..++..|
T Consensus        86 g~~~~~~R~~~l~~F  100 (191)
T 2p6n_A           86 GGKDQEERTKAIEAF  100 (191)
T ss_dssp             TTSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999999988754

>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A

Probab=99.35  E-value=2.8e-13  Score=125.55  Aligned_cols=42  Identities=19%  Similarity=0.296  Sum_probs=36.9

Q ss_pred             CCcCCCC--CCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC
Q psy17636         58 SSFGHFG--FDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII   99 (222)
Q Consensus        58 ~~f~~l~--l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi   99 (222)
                      ++|++++  |++.+.+.+++.||..|+|+|.++++.+++|+|++
T Consensus         1 m~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~l   44 (702)
T 2p6r_A            1 MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLL   44 (702)
T ss_dssp             CCSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEE
T ss_pred             CchhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEE
Confidence            4689999  99999999999999999999999999999999988

>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*

Probab=99.32  E-value=1.7e-12  Score=112.73  Aligned_cols=98  Identities=23%  Similarity=0.223  Sum_probs=72.3

Q ss_pred             HHHHHhhCC-----------CCCeEEEEccc-cchHHH-HHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHH
Q psy17636        103 VRSICDHVR-----------PNRQTLLFSAT-FKKRIE-KLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWL  169 (222)
Q Consensus       103 l~~Il~~~~-----------~~~Q~~lfSAT-~~~~v~-~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L  169 (222)
                      +..++..++           .++|+++|||| .|..+. .+...++.    +.+........++.|.++.+   +|...|
T Consensus       172 ~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~---~~~~~l  244 (414)
T 3oiy_A          172 IRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS---RSKEKL  244 (414)
T ss_dssp             HHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEESS---CCHHHH
T ss_pred             HHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchheeecc---CHHHHH
Confidence            666777665           78999999999 676654 33333333    34444556677899988766   456666


Q ss_pred             HHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEE-EecCC
Q psy17636        170 THNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLI-QAVGI  209 (222)
Q Consensus       170 ~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~-~lHg~  209 (222)
                      ..++...  .+++|||||++..  .+ ..|...|+++. .+||+
T Consensus       245 ~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~  286 (414)
T 3oiy_A          245 VELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF  286 (414)
T ss_dssp             HHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH
T ss_pred             HHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc
Confidence            6666663  4799999999976  88 99999999998 99996

>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}

Probab=99.30  E-value=1.1e-11  Score=101.67  Aligned_cols=82  Identities=34%  Similarity=0.535  Sum_probs=72.3

Q ss_pred             CCcCCCC--CCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------------
Q psy17636         58 SSFGHFG--FDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------------   99 (222)
Q Consensus        58 ~~f~~l~--l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------------   99 (222)
                      .+|++++  +++.++++|.++||..|||+|.++||.++.|+|++                                    
T Consensus        52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~li  131 (262)
T 3ly5_A           52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLI  131 (262)
T ss_dssp             GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred             CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEE
Confidence            4577777  99999999999999999999999999999999988                                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus       132 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah  211 (262)
T 3ly5_A          132 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD  211 (262)
T ss_dssp             ECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH
T ss_pred             EeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH
Confidence                                                                                            


Q ss_pred             -------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCc
Q psy17636        100 -------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPI  139 (222)
Q Consensus       100 -------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~  139 (222)
                             .+++..|++.++.++|+++||||+|.+++++++.+++++.
T Consensus       212 ~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~  258 (262)
T 3ly5_A          212 RILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP  258 (262)
T ss_dssp             HHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred             HHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence                   6778899999999999999999999999999999998543

>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A

Probab=99.29  E-value=9.8e-12  Score=120.23  Aligned_cols=98  Identities=23%  Similarity=0.229  Sum_probs=74.2

Q ss_pred             HHHHHhhCC-----------CCCeEEEEccc-cchHHHH-HHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHH
Q psy17636        103 VRSICDHVR-----------PNRQTLLFSAT-FKKRIEK-LARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWL  169 (222)
Q Consensus       103 l~~Il~~~~-----------~~~Q~~lfSAT-~~~~v~~-l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L  169 (222)
                      +..+++.+|           .++|+++|||| .|..+.. +....+    .+.+........++.|.++.+   +|...|
T Consensus       229 i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l----~i~v~~~~~~~~~i~~~~~~~---~k~~~L  301 (1104)
T 4ddu_A          229 IRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLL----NFTVGRLVSVARNITHVRISS---RSKEKL  301 (1104)
T ss_dssp             HHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHT----CCCCCBCCCCCCCEEEEEESC---CCHHHH
T ss_pred             HHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcce----eEEeccCCCCcCCceeEEEec---CHHHHH
Confidence            677777776           78999999999 6766553 333332    245555556778899998877   466667


Q ss_pred             HHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEE-EecCC
Q psy17636        170 THNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLI-QAVGI  209 (222)
Q Consensus       170 ~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~-~lHg~  209 (222)
                      ..++...  .+++|||||++..  .+ ..|...|+++. .+||+
T Consensus       302 ~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~  343 (1104)
T 4ddu_A          302 VELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF  343 (1104)
T ss_dssp             HHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH
T ss_pred             HHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc
Confidence            6766663  4799999999976  88 99999999998 99993

>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A

Probab=99.23  E-value=3.8e-12  Score=118.59  Aligned_cols=61  Identities=11%  Similarity=-0.050  Sum_probs=48.1

Q ss_pred             EEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHH
Q psy17636        157 VINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPS  217 (222)
Q Consensus       157 ~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~  217 (222)
                      ++++...+|...|...+.... ...++||||+|+..  .| ..|+..|+++..|||++.+++|+-
T Consensus       437 ~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~i  501 (922)
T 1nkt_A          437 LIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATI  501 (922)
T ss_dssp             EEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHH
T ss_pred             EEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHH
Confidence            455666789988888776543 34589999999966  88 999999999999999976555543

>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*

Probab=99.20  E-value=5.6e-12  Score=121.60  Aligned_cols=93  Identities=11%  Similarity=0.129  Sum_probs=72.3

Q ss_pred             CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH
Q psy17636        112 PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF  191 (222)
Q Consensus       112 ~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~  191 (222)
                      ..+|+++||||++.. ..++..++.++..+.+........++.|.++   ..+|...|..++...  .+++||||+|+..
T Consensus       214 ~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~~~L~~ll~~~--~~~~LVF~~t~~~  287 (1054)
T 1gku_B          214 GEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESISTLSSILEKL--GTGGIIYARTGEE  287 (1054)
T ss_dssp             ECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCTTTTHHHHTTS--CSCEEEEESSHHH
T ss_pred             cCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHHHHHHHHHhhc--CCCEEEEEcCHHH
Confidence            457999999999988 7666667776666666666666778998877   355666666655543  4799999999976


Q ss_pred             --HH-HHhHHCCceEEEecCCCC
Q psy17636        192 --EL-VNLIAKNYWLIQAVGILM  211 (222)
Q Consensus       192 --~l-~~L~~~g~~~~~lHg~~~  211 (222)
                        .+ ..|... +++..+||+|.
T Consensus       288 a~~l~~~L~~~-~~v~~lhg~~~  309 (1054)
T 1gku_B          288 AEEIYESLKNK-FRIGIVTATKK  309 (1054)
T ss_dssp             HHHHHHTTTTS-SCEEECTTSSS
T ss_pred             HHHHHHHHhhc-cCeeEEeccHH
Confidence              78 889888 99999999984

>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}

Probab=99.16  E-value=4.9e-11  Score=92.95  Aligned_cols=77  Identities=22%  Similarity=0.153  Sum_probs=57.9

Q ss_pred             CCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        146 IGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       146 ~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ...++++|+|.++.|+..+|...|.++|......+++||||+++..  .+ ..|...|+.+..+||+|++.+|...+..|
T Consensus        13 ~~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f   92 (185)
T 2jgn_A           13 QGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF   92 (185)
T ss_dssp             ---CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred             cCCCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence            3356789999999999999999998888775456799999999976  88 99999999999999999999999988654

>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*

Probab=99.13  E-value=5e-11  Score=109.95  Aligned_cols=61  Identities=16%  Similarity=0.059  Sum_probs=35.3

Q ss_pred             CCchHHHHHHHHHhhC---CCCeEEEEecccHH--HH-HHhHHCC----ceEEEe--------cCCCCCChHHHhhcCC
Q psy17636        162 QTQKLTWLTHNLVEFL---STGSLLIFVTKKCF--EL-VNLIAKN----YWLIQA--------VGILMCPKSPSRLSLV  222 (222)
Q Consensus       162 ~~~K~~~L~~~l~~~~---~~~~~IVF~nt~~~--~l-~~L~~~g----~~~~~l--------Hg~~~q~~R~~~L~~~  222 (222)
                      ...|...|..++.+..   +.+++||||+++..  .+ ..|...|    +++..+        ||+|++++|...+..|
T Consensus       378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F  456 (696)
T 2ykg_A          378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF  456 (696)
T ss_dssp             CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-------------------------
T ss_pred             CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHH
Confidence            3567788877776652   45799999999977  78 9999988    899999        4599999999998776

>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1

Probab=99.13  E-value=1.5e-10  Score=112.41  Aligned_cols=115  Identities=14%  Similarity=0.054  Sum_probs=78.3

Q ss_pred             HHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeE
Q psy17636        103 VRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSL  182 (222)
Q Consensus       103 l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~  182 (222)
                      ...++..++.+.|++++|||.++....++...+.++..+....  .....+..++.....   ......++......+++
T Consensus       741 ~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~--~~r~~i~~~~~~~~~---~~i~~~il~~l~~g~qv  815 (1151)
T 2eyq_A          741 HKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP--ARRLAVKTFVREYDS---MVVREAILREILRGGQV  815 (1151)
T ss_dssp             HHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCC--CBCBCEEEEEEECCH---HHHHHHHHHHHTTTCEE
T ss_pred             HHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCC--CCccccEEEEecCCH---HHHHHHHHHHHhcCCeE
Confidence            3444555566789999999988777777766666665543322  222345555443332   22222333344456899


Q ss_pred             EEEecccHH--HH-HHhHHC--CceEEEecCCCCCChHHHhhcCC
Q psy17636        183 LIFVTKKCF--EL-VNLIAK--NYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       183 IVF~nt~~~--~l-~~L~~~--g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      +||||++.+  .+ ..|+..  |+++..+||+|++.+|+..+..|
T Consensus       816 lvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F  860 (1151)
T 2eyq_A          816 YYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDF  860 (1151)
T ss_dssp             EEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHH
Confidence            999999865  77 888877  89999999999999999988654

>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}

Probab=99.13  E-value=5.1e-10  Score=107.45  Aligned_cols=120  Identities=12%  Similarity=0.073  Sum_probs=77.6

Q ss_pred             HHHHHHHHhhCCCCCeEEEEccccchHHH--HHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcC---------C------
Q psy17636        100 EPQVRSICDHVRPNRQTLLFSATFKKRIE--KLARDVLTDPIKIVQGDIGEANTDITQVVINLP---------Q------  162 (222)
Q Consensus       100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~--~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~---------~------  162 (222)
                      ...+..++..++++.|++++|||+|...+  ........++..+......  +..++++++...         .      
T Consensus       210 g~~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~  287 (1010)
T 2xgj_A          210 GVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFRE  287 (1010)
T ss_dssp             HHHHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBCH
T ss_pred             hHHHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEEecCCcceeeeeccccccch
Confidence            45567778888899999999999987532  3333334566666544332  234666655422         0      


Q ss_pred             ----------------------------------------CchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHC
Q psy17636        163 ----------------------------------------TQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAK  199 (222)
Q Consensus       163 ----------------------------------------~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~  199 (222)
                                                              ......|+..+... +..++||||+++..  .+ ..|...
T Consensus       288 ~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~  366 (1010)
T 2xgj_A          288 ENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKL  366 (1010)
T ss_dssp             HHHHHHHHTCC------------------------------CHHHHHHHHHHHH-TCCSEEEEESSHHHHHHHHHTTTTS
T ss_pred             HHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhC
Confidence                                                    11122244444333 34599999999966  67 777765


Q ss_pred             Cce---------------------------------------EEEecCCCCCChHHHhhcCC
Q psy17636        200 NYW---------------------------------------LIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       200 g~~---------------------------------------~~~lHg~~~q~~R~~~L~~~  222 (222)
                      |+.                                       ++.+||+|++.+|...+.+|
T Consensus       367 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F  428 (1010)
T 2xgj_A          367 DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILF  428 (1010)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHH
Confidence            543                                       78899999999999887654

>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}

Probab=99.12  E-value=1.3e-10  Score=88.58  Aligned_cols=74  Identities=19%  Similarity=0.186  Sum_probs=65.0

Q ss_pred             CCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        148 EANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       148 ~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ..+.+|+|+++.++..+|...|..++... +.+++||||+++..  .+ ..|...|+++..+||+|++.+|...+..|
T Consensus         5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f   81 (163)
T 2hjv_A            5 LTTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEF   81 (163)
T ss_dssp             -CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred             cCcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence            45778999999999999999998877765 45799999999976  88 99999999999999999999999988654

>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19

Probab=99.12  E-value=9.7e-11  Score=90.11  Aligned_cols=73  Identities=19%  Similarity=0.121  Sum_probs=62.7

Q ss_pred             CCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        149 ANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       149 ~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ++.+|+|+|+.++..+|...|..++... ..+++||||+++..  .+ ..|...|+++..+||+|++.+|...+..|
T Consensus         2 ~~~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f   77 (172)
T 1t5i_A            2 SLHGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQF   77 (172)
T ss_dssp             ---CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred             ccCCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHH
Confidence            3568999999999999999998877654 56799999999976  88 99999999999999999999999988754

>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A

Probab=99.10  E-value=1.7e-12  Score=118.71  Aligned_cols=100  Identities=11%  Similarity=0.065  Sum_probs=65.9

Q ss_pred             HHHHHHHHhhCC-CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCC
Q psy17636        100 EPQVRSICDHVR-PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLS  178 (222)
Q Consensus       100 ~~~l~~Il~~~~-~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~  178 (222)
                      ...+..|+..++ +++|+++||||++..+..++.   .++..+.+...             ++.. +...++..+.+.  
T Consensus       294 ~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-------------~~~~-~~~~ll~~l~~~--  354 (618)
T 2whx_A          294 VAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-------------IPER-SWNTGFDWITDY--  354 (618)
T ss_dssp             HHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-------------CCSS-CCSSSCHHHHHC--
T ss_pred             HHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-------------CCHH-HHHHHHHHHHhC--
Confidence            335666666654 689999999999887654332   24544444321             1111 111223444442  


Q ss_pred             CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        179 TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       179 ~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .+++||||+|+..  .+ ..|...|+++..+||+    +|...+..|
T Consensus       355 ~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F  397 (618)
T 2whx_A          355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKT  397 (618)
T ss_dssp             CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHH
T ss_pred             CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhh
Confidence            5799999999977  88 9999999999999994    677776543

>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*

Probab=99.09  E-value=1.6e-11  Score=114.01  Aligned_cols=62  Identities=6%  Similarity=-0.022  Sum_probs=49.8

Q ss_pred             EEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHh
Q psy17636        157 VINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSR  218 (222)
Q Consensus       157 ~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~  218 (222)
                      ++++...+|...|...+.... ...++||||+|+..  .| ..|+..|+++..|||++.+++|+-.
T Consensus       418 ~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~ii  483 (853)
T 2fsf_A          418 LVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIV  483 (853)
T ss_dssp             EEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHH
T ss_pred             EEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHH
Confidence            456666889999988776543 34689999999966  88 9999999999999999876666543

>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}

Probab=99.06  E-value=1.9e-10  Score=88.50  Aligned_cols=74  Identities=18%  Similarity=0.152  Sum_probs=63.5

Q ss_pred             CCCCCeeEEEEEcCCCc-hHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        148 EANTDITQVVINLPQTQ-KLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       148 ~~~~~i~q~~~~~~~~~-K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .++.+|+|+|+.|+..+ |...|..++.. ...+++||||+++..  .+ ..|...|+.+..+||+|++.+|...+..|
T Consensus         3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f   80 (175)
T 2rb4_A            3 LTLNNIRQYYVLCEHRKDKYQALCNIYGS-ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRF   80 (175)
T ss_dssp             CCBCCEEEEEEECSSHHHHHHHHHHHHTT-SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHH
T ss_pred             CccCCceEEEEEcCChHhHHHHHHHHHHh-CCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence            35678999999999855 99988776654 456799999999976  88 99999999999999999999999988654

>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A

Probab=99.05  E-value=5.3e-10  Score=107.23  Aligned_cols=59  Identities=17%  Similarity=0.019  Sum_probs=45.7

Q ss_pred             CchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCc--------------------------------------
Q psy17636        163 TQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNY--------------------------------------  201 (222)
Q Consensus       163 ~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~--------------------------------------  201 (222)
                      ..+...|+..+... +..++||||+|+..  .+ ..|...|+                                      
T Consensus       321 ~~~~~~li~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~  399 (997)
T 4a4z_A          321 KKTWPEIVNYLRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLE  399 (997)
T ss_dssp             TTHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhh
Confidence            34555666666554 45799999999966  77 88877666                                      


Q ss_pred             -eEEEecCCCCCChHHHhhcCC
Q psy17636        202 -WLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       202 -~~~~lHg~~~q~~R~~~L~~~  222 (222)
                       .+..+||+|++.+|+..+.+|
T Consensus       400 ~gi~~~H~gl~~~~R~~v~~~F  421 (997)
T 4a4z_A          400 RGIAVHHGGLLPIVKELIEILF  421 (997)
T ss_dssp             TTEEEECTTSCHHHHHHHHHHH
T ss_pred             cCeeeecCCCCHHHHHHHHHHH
Confidence             479999999999999988754

>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19

Probab=99.03  E-value=3.5e-10  Score=86.18  Aligned_cols=71  Identities=18%  Similarity=0.180  Sum_probs=60.9

Q ss_pred             CCeeEEEEEcCCCc-hHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        151 TDITQVVINLPQTQ-KLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       151 ~~i~q~~~~~~~~~-K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ++|+|+|+.++..+ |...|..++... +.+++||||+++..  .+ ..|...|+.+..+||+|++.+|...+..|
T Consensus         2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f   76 (165)
T 1fuk_A            2 EGIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEF   76 (165)
T ss_dssp             --CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHH
Confidence            47999999999877 999998877654 56899999999876  78 99999999999999999999999988654

>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B

Probab=99.01  E-value=4.3e-09  Score=105.61  Aligned_cols=115  Identities=9%  Similarity=0.015  Sum_probs=67.7

Q ss_pred             HHhhCCCCCeEEEEccccchHHHHHHHHhcCCC-cEEEeCCCCCCCCCeeEEEEEcCCCchHHH-------HHHHHHhhC
Q psy17636        106 ICDHVRPNRQTLLFSATFKKRIEKLARDVLTDP-IKIVQGDIGEANTDITQVVINLPQTQKLTW-------LTHNLVEFL  177 (222)
Q Consensus       106 Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p-~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~-------L~~~l~~~~  177 (222)
                      +...++++.|++++|||+++ .++++.-.-.++ ....+... .-+-.++.++...+.......       +...+....
T Consensus      1076 i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~-~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 1153 (1724)
T 4f92_B         1076 ISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPN-VRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHS 1153 (1724)
T ss_dssp             HHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGG-GCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHC
T ss_pred             HHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCC-CCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhc
Confidence            33455778999999999986 456665332232 22233222 223346666555444322221       223344455


Q ss_pred             CCCeEEEEecccHH--HH-HHh----HHC------------------------------CceEEEecCCCCCChHHHhhc
Q psy17636        178 STGSLLIFVTKKCF--EL-VNL----IAK------------------------------NYWLIQAVGILMCPKSPSRLS  220 (222)
Q Consensus       178 ~~~~~IVF~nt~~~--~l-~~L----~~~------------------------------g~~~~~lHg~~~q~~R~~~L~  220 (222)
                      ..+++||||+|+..  .+ ..|    ...                              ...++.+||+|++++|.....
T Consensus      1154 ~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~ 1233 (1724)
T 4f92_B         1154 PKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQ 1233 (1724)
T ss_dssp             SSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHH
T ss_pred             CCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHH
Confidence            56799999999854  22 222    111                              235889999999999998766


Q ss_pred             CC
Q psy17636        221 LV  222 (222)
Q Consensus       221 ~~  222 (222)
                      +|
T Consensus      1234 lF 1235 (1724)
T 4f92_B         1234 LF 1235 (1724)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*

Probab=98.89  E-value=6.7e-09  Score=92.76  Aligned_cols=60  Identities=15%  Similarity=0.085  Sum_probs=27.2

Q ss_pred             CchHHHHHHHHHhh---CCCCeEEEEecccHH--HH-HHhHHC------------CceEEEecCCCCCChHHHhhcCC
Q psy17636        163 TQKLTWLTHNLVEF---LSTGSLLIFVTKKCF--EL-VNLIAK------------NYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       163 ~~K~~~L~~~l~~~---~~~~~~IVF~nt~~~--~l-~~L~~~------------g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ..|...|.++|.+.   .+..++||||+++..  .+ ..|...            |..+..+||+|++++|...+..|
T Consensus       371 ~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F  448 (556)
T 4a2p_A          371 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF  448 (556)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-------------------------
T ss_pred             ChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHh
Confidence            44666676766554   345799999999977  77 888775            66777788899999999998876

>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}

Probab=98.83  E-value=6.7e-09  Score=86.88  Aligned_cols=70  Identities=13%  Similarity=0.081  Sum_probs=62.1

Q ss_pred             CeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        152 DITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       152 ~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      +++|+++.++..+|...|..++.... .+++||||+++.+  .+ ..|...|+.+..+||+|++.+|...+..|
T Consensus         2 ~v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f   74 (300)
T 3i32_A            2 TYEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAF   74 (300)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHH
T ss_pred             ceEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHh
Confidence            47899999999999999988776654 6899999999976  88 99999999999999999999999988654

>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}

Probab=98.81  E-value=4.5e-08  Score=91.92  Aligned_cols=60  Identities=15%  Similarity=0.073  Sum_probs=25.9

Q ss_pred             CchHHHHHHHHHhh---CCCCeEEEEecccHH--HH-HHhHH------------CCceEEEecCCCCCChHHHhhcCC
Q psy17636        163 TQKLTWLTHNLVEF---LSTGSLLIFVTKKCF--EL-VNLIA------------KNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       163 ~~K~~~L~~~l~~~---~~~~~~IVF~nt~~~--~l-~~L~~------------~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ..|...|..+|.+.   .+..++||||+++..  .+ ..|..            .|..+..+||+|++.+|...+..|
T Consensus       612 ~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F  689 (797)
T 4a2q_A          612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF  689 (797)
T ss_dssp             CHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC------------------------
T ss_pred             ChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHh
Confidence            34666666666542   345799999999976  77 88876            377788889999999999998876

>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}

Probab=98.80  E-value=6.4e-08  Score=86.19  Aligned_cols=60  Identities=17%  Similarity=0.074  Sum_probs=27.3

Q ss_pred             CchHHHHHHHHHhh---CCCCeEEEEecccHH--HH-HHhHHCC------------ceEEEecCCCCCChHHHhhcCC
Q psy17636        163 TQKLTWLTHNLVEF---LSTGSLLIFVTKKCF--EL-VNLIAKN------------YWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       163 ~~K~~~L~~~l~~~---~~~~~~IVF~nt~~~--~l-~~L~~~g------------~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ..|...|..+|.+.   .+.+++||||+++..  .+ ..|...|            .....+||+|++++|...+..|
T Consensus       370 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F  447 (555)
T 3tbk_A          370 NPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAF  447 (555)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC----------------------
T ss_pred             CHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHH
Confidence            34666666666543   245799999999976  77 8888764            4555666799999999998876

>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}

Probab=98.27  E-value=6.2e-10  Score=85.26  Aligned_cols=71  Identities=20%  Similarity=0.121  Sum_probs=61.8

Q ss_pred             CCeeEEEEEcCC-CchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        151 TDITQVVINLPQ-TQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       151 ~~i~q~~~~~~~-~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ++|+|+++.++. .+|...|..++.. ...+++||||+++..  .+ ..|...|+.+..+||+|++.+|...+..|
T Consensus         2 ~~i~~~~~~~~~~~~k~~~l~~ll~~-~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f   76 (170)
T 2yjt_D            2 KKIHQWYYRADDLEHKTALLVHLLKQ-PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRL   76 (170)
Confidence            468999999998 8999988776655 345799999999876  78 99999999999999999999999988765

>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}

Probab=98.78  E-value=4.9e-10  Score=103.31  Aligned_cols=88  Identities=14%  Similarity=0.151  Sum_probs=56.2

Q ss_pred             CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH
Q psy17636        112 PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF  191 (222)
Q Consensus       112 ~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~  191 (222)
                      .++|+++||||++..+..++..  ..|              +......++...+.. ++..+.+  ..+++||||+++.+
T Consensus       362 ~~~~vl~~SAT~~~~i~~~~~~--~~~--------------i~~v~~~~~~~~~~~-~l~~l~~--~~~~~lVF~~s~~~  422 (673)
T 2wv9_A          362 GEAAAIFMTATPPGTSDPFPDT--NSP--------------VHDVSSEIPDRAWSS-GFEWITD--YAGKTVWFVASVKM  422 (673)
T ss_dssp             TSCEEEEECSSCTTCCCSSCCC--SSC--------------EEEEECCCCSSCCSS-CCHHHHS--CCSCEEEECSSHHH
T ss_pred             cCCcEEEEcCCCChhhhhhccc--CCc--------------eEEEeeecCHHHHHH-HHHHHHh--CCCCEEEEECCHHH
Confidence            6789999999998664432211  111              111111122222212 2233443  35799999999976


Q ss_pred             --HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        192 --EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       192 --~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                        .+ ..|+..|+++..+||    ++|...+..|
T Consensus       423 ~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F  452 (673)
T 2wv9_A          423 SNEIAQCLQRAGKRVIQLNR----KSYDTEYPKC  452 (673)
T ss_dssp             HHHHHHHHHTTTCCEEEECS----SSHHHHGGGG
T ss_pred             HHHHHHHHHhCCCeEEEeCh----HHHHHHHHHH
Confidence              88 999999999999999    4788887765

>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B

Probab=98.77  E-value=2.4e-08  Score=100.30  Aligned_cols=110  Identities=15%  Similarity=0.167  Sum_probs=65.1

Q ss_pred             hCCCCCeEEEEccccchHHHHHHHHhcC-CC-c-EEEeCCCCCCCCCeeEEEEEcCCCchH---HH----HHHHHHhhCC
Q psy17636        109 HVRPNRQTLLFSATFKKRIEKLARDVLT-DP-I-KIVQGDIGEANTDITQVVINLPQTQKL---TW----LTHNLVEFLS  178 (222)
Q Consensus       109 ~~~~~~Q~~lfSAT~~~~v~~l~~~~l~-~p-~-~i~v~~~~~~~~~i~q~~~~~~~~~K~---~~----L~~~l~~~~~  178 (222)
                      .++++.|++++|||+|+ .+++|+ |+. ++ . ...++. ..-+-.+++.++.+......   ..    +...+.+...
T Consensus       240 ~~~~~~riI~LSATl~N-~~dvA~-wL~~~~~~~~~~~~~-~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  316 (1724)
T 4f92_B          240 MTQEDVRLIGLSATLPN-YEDVAT-FLRVDPAKGLFYFDN-SFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAG  316 (1724)
T ss_dssp             HHTCCCEEEEEECSCTT-HHHHHH-HTTCCHHHHEEECCG-GGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCS
T ss_pred             hCCCCCcEEEEecccCC-HHHHHH-HhCCCCCCCeEEECC-CCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhc
Confidence            45678999999999985 456664 444 22 1 112222 22233577777766553221   11    2223333344


Q ss_pred             CCeEEEEecccHH--HH-HHhH----HC---------------------------------CceEEEecCCCCCChHHHh
Q psy17636        179 TGSLLIFVTKKCF--EL-VNLI----AK---------------------------------NYWLIQAVGILMCPKSPSR  218 (222)
Q Consensus       179 ~~~~IVF~nt~~~--~l-~~L~----~~---------------------------------g~~~~~lHg~~~q~~R~~~  218 (222)
                      .+++||||+||..  .+ ..|.    ..                                 ...++.+||+|++++|...
T Consensus       317 ~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~v  396 (1724)
T 4f92_B          317 KNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLV  396 (1724)
T ss_dssp             SCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHH
Confidence            5799999999844  33 3332    11                                 2347899999999999876


Q ss_pred             hcC
Q psy17636        219 LSL  221 (222)
Q Consensus       219 L~~  221 (222)
                      ..+
T Consensus       397 E~~  399 (1724)
T 4f92_B          397 EDL  399 (1724)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}

Probab=98.76  E-value=9.8e-08  Score=91.14  Aligned_cols=60  Identities=15%  Similarity=0.102  Sum_probs=26.9

Q ss_pred             CchHHHHHHHHHhhC---CCCeEEEEecccHH--HH-HHhHHC------------CceEEEecCCCCCChHHHhhcCC
Q psy17636        163 TQKLTWLTHNLVEFL---STGSLLIFVTKKCF--EL-VNLIAK------------NYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       163 ~~K~~~L~~~l~~~~---~~~~~IVF~nt~~~--~l-~~L~~~------------g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ..|...|..+|.+..   +..++||||+++..  .+ ..|...            |..+..+||+|++.+|...+..|
T Consensus       612 ~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~F  689 (936)
T 4a2w_A          612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF  689 (936)
T ss_dssp             CHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC------------------------
T ss_pred             CHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHh
Confidence            345666666666542   34799999999977  77 999876            67777889999999999998876

>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A

Probab=98.71  E-value=1.6e-08  Score=80.24  Aligned_cols=70  Identities=17%  Similarity=0.113  Sum_probs=60.8

Q ss_pred             CeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        152 DITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       152 ~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .+.+.++.++..+|...|..++... ..+++||||+++..  .+ ..|...|+.+..+||+|++.+|...+..|
T Consensus         5 ~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f   77 (212)
T 3eaq_A            5 TYEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAF   77 (212)
T ss_dssp             CBCCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHH
T ss_pred             ceeeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHH
Confidence            4677888899999999998877654 46799999999976  88 99999999999999999999999988654

>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19

Probab=98.68  E-value=2.2e-08  Score=93.71  Aligned_cols=105  Identities=17%  Similarity=0.116  Sum_probs=61.7

Q ss_pred             CCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccH-
Q psy17636        113 NRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKC-  190 (222)
Q Consensus       113 ~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~-  190 (222)
                      +.|++++|||.++....++  ++.+.....+.........+...+  ++ ..+...+...+.+.. ..++++|||++.. 
T Consensus       516 ~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~r~~i~~~~--~~-~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~  590 (780)
T 1gm5_A          516 MVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPGRKEVQTML--VP-MDRVNEVYEFVRQEVMRGGQAFIVYPLIEE  590 (780)
T ss_dssp             CCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSSCCCCEECC--CC-SSTHHHHHHHHHHHTTTSCCBCCBCCCC--
T ss_pred             CCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCCCcceEEEE--ec-cchHHHHHHHHHHHHhcCCcEEEEecchhh
Confidence            4799999999766543333  333322111221111122343322  22 334444556665543 3469999998541 


Q ss_pred             ---------HHH-HHhHH---CCceEEEecCCCCCChHHHhhcCC
Q psy17636        191 ---------FEL-VNLIA---KNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       191 ---------~~l-~~L~~---~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                               +.+ ..|..   .|+.+..+||+|++.+|+..+..|
T Consensus       591 se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F  635 (780)
T 1gm5_A          591 SDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEF  635 (780)
T ss_dssp             ------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHH
Confidence                     267 77877   588999999999999999988654

>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19

Probab=98.68  E-value=1.6e-07  Score=81.62  Aligned_cols=60  Identities=15%  Similarity=0.119  Sum_probs=46.9

Q ss_pred             CchHHHHHHHHHhh---CCCCeEEEEecccHH--HH-HHhHHCCceEEEecC--------CCCCChHHHhhcCC
Q psy17636        163 TQKLTWLTHNLVEF---LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVG--------ILMCPKSPSRLSLV  222 (222)
Q Consensus       163 ~~K~~~L~~~l~~~---~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg--------~~~q~~R~~~L~~~  222 (222)
                      ..|...|.++|.+.   ...+++||||+++..  .+ ..|...|+++..+||        +|++.+|...+..|
T Consensus       342 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F  415 (494)
T 1wp9_A          342 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEF  415 (494)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHH
Confidence            45667777766664   356799999999876  78 999999999999999        99999999988754

>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A

Probab=98.67  E-value=8.1e-09  Score=90.96  Aligned_cols=82  Identities=10%  Similarity=0.021  Sum_probs=53.3

Q ss_pred             CCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccH
Q psy17636        111 RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKC  190 (222)
Q Consensus       111 ~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~  190 (222)
                      ++++|+++||||+|..+..+   +..++..+.+...  .+..  . +     ..+    ...+.+.  .+++||||+|+.
T Consensus       139 ~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~--~p~~--~-~-----~~~----~~~l~~~--~~~~lVF~~s~~  199 (451)
T 2jlq_A          139 MGEAAAIFMTATPPGSTDPF---PQSNSPIEDIERE--IPER--S-W-----NTG----FDWITDY--QGKTVWFVPSIK  199 (451)
T ss_dssp             TTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECC--CCSS--C-C-----SSS----CHHHHHC--CSCEEEECSSHH
T ss_pred             CCCceEEEEccCCCccchhh---hcCCCceEecCcc--CCch--h-h-----HHH----HHHHHhC--CCCEEEEcCCHH
Confidence            45799999999998754332   2345554444311  1100  0 0     111    2333332  569999999997


Q ss_pred             H--HH-HHhHHCCceEEEecCCCC
Q psy17636        191 F--EL-VNLIAKNYWLIQAVGILM  211 (222)
Q Consensus       191 ~--~l-~~L~~~g~~~~~lHg~~~  211 (222)
                      +  .+ ..|...|+.+..+||++.
T Consensus       200 ~a~~l~~~L~~~g~~~~~lh~~~~  223 (451)
T 2jlq_A          200 AGNDIANCLRKSGKRVIQLSRKTF  223 (451)
T ss_dssp             HHHHHHHHHHTTTCCEEEECTTTH
T ss_pred             HHHHHHHHHHHcCCeEEECCHHHH
Confidence            6  88 999999999999999865

>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}

Probab=98.60  E-value=4.9e-09  Score=93.27  Aligned_cols=123  Identities=8%  Similarity=0.079  Sum_probs=74.6

Q ss_pred             HHHHHHHHhhCCCCCeEEEEccccchHHHH-HHHHhcCCCcEEEeCCCCC------CCCCeeEEEEEcCC----------
Q psy17636        100 EPQVRSICDHVRPNRQTLLFSATFKKRIEK-LARDVLTDPIKIVQGDIGE------ANTDITQVVINLPQ----------  162 (222)
Q Consensus       100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~-l~~~~l~~p~~i~v~~~~~------~~~~i~q~~~~~~~----------  162 (222)
                      .+....++..++...+++++|||.+..... +....+.++..+.+.....      .+..+....+..+.          
T Consensus       239 ~~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  318 (510)
T 2oca_A          239 GKSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKT  318 (510)
T ss_dssp             HHHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCC
T ss_pred             cccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccc
Confidence            567888888888889999999999766433 2222233444433332211      11112222222211          


Q ss_pred             -----------CchHHHHHHHHHhhC--CCCeEEEEecccHH-HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        163 -----------TQKLTWLTHNLVEFL--STGSLLIFVTKKCF-EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       163 -----------~~K~~~L~~~l~~~~--~~~~~IVF~nt~~~-~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                                 ..|...+...+....  ...++||||+++.. .+ ..|...|.++..+||+|++.+|+..+..|
T Consensus       319 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f  393 (510)
T 2oca_A          319 YQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLA  393 (510)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHH
T ss_pred             hHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHH
Confidence                       123334444444432  23467788874433 78 99999989999999999999999887654

>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*

Probab=98.58  E-value=1.7e-07  Score=86.28  Aligned_cols=103  Identities=10%  Similarity=-0.009  Sum_probs=67.9

Q ss_pred             CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccH
Q psy17636        112 PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKC  190 (222)
Q Consensus       112 ~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~  190 (222)
                      ..+|+++||||.+......+    .......+........    .+...+...+...|+..|.... ...++||||+|+.
T Consensus       385 ~~~q~i~~SAT~~~~~~~~~----~~~~~~~~r~~~l~~p----~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~  456 (661)
T 2d7d_A          385 HMHNIVYVSATPGPYEIEHT----DEMVEQIIRPTGLLDP----LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKK  456 (661)
T ss_dssp             TCSEEEEECSSCCHHHHHHC----SSCEEECCCTTCCCCC----EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             cCCCEEEEecCCChhHHHhh----hCeeeeeecccCCCCC----eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence            46899999999986543221    2222221211111111    1222233455566666666543 4569999999986


Q ss_pred             H--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        191 F--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       191 ~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .  .+ ..|...|+++..+||+|++.+|...+..|
T Consensus       457 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f  491 (661)
T 2d7d_A          457 MSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDL  491 (661)
T ss_dssp             HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHH
Confidence            6  88 99999999999999999999999987653

>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*

Probab=98.48  E-value=3.8e-07  Score=84.06  Aligned_cols=103  Identities=16%  Similarity=0.017  Sum_probs=67.0

Q ss_pred             CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccH
Q psy17636        112 PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKC  190 (222)
Q Consensus       112 ~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~  190 (222)
                      ..+|+++||||.+......+    .......+........    .+...+...+...|+..|.... ...++||||+|+.
T Consensus       379 ~~~q~i~~SAT~~~~~~~~~----~~~~~~~~r~~~l~~p----~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~  450 (664)
T 1c4o_A          379 RVSQVVFVSATPGPFELAHS----GRVVEQIIRPTGLLDP----LVRVKPTENQILDLMEGIRERAARGERTLVTVLTVR  450 (664)
T ss_dssp             TCSEEEEEESSCCHHHHHHC----SEEEEECSCTTCCCCC----EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             hcCCEEEEecCCCHHHHHhh----hCeeeeeeccCCCCCC----eEEEecccchHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            36899999999986542221    1111111111111111    1222333556666666665543 4579999999986


Q ss_pred             H--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        191 F--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       191 ~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .  .+ ..|...|+++..+||+|++.+|...+..|
T Consensus       451 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f  485 (664)
T 1c4o_A          451 MAEELTSFLVEHGIRARYLHHELDAFKRQALIRDL  485 (664)
T ss_dssp             HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHh
Confidence            6  88 99999999999999999999999987643

>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...

Probab=98.32  E-value=5e-07  Score=82.86  Aligned_cols=98  Identities=17%  Similarity=0.129  Sum_probs=62.5

Q ss_pred             HHHHHHHHhhCCCCCe--EEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhC
Q psy17636        100 EPQVRSICDHVRPNRQ--TLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFL  177 (222)
Q Consensus       100 ~~~l~~Il~~~~~~~Q--~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~  177 (222)
                      ..++..|++.++..+|  ++++|||++..+.      ...+....+...  ....+.    ...  .+..     + ...
T Consensus       335 ~~~l~~Il~~l~~~~~~llil~SAT~~~~i~------~~~p~i~~v~~~--~~~~i~----~~~--~~~~-----l-~~~  394 (666)
T 3o8b_A          335 ILGIGTVLDQAETAGARLVVLATATPPGSVT------VPHPNIEEVALS--NTGEIP----FYG--KAIP-----I-EAI  394 (666)
T ss_dssp             HHHHHHHHHHTTTTTCSEEEEEESSCTTCCC------CCCTTEEEEECB--SCSSEE----ETT--EEEC-----G-GGS
T ss_pred             HHHHHHHHHhhhhcCCceEEEECCCCCcccc------cCCcceEEEeec--ccchhH----HHH--hhhh-----h-hhc
Confidence            5668889999988877  5677999987421      122222211110  001111    011  0100     1 123


Q ss_pred             CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHH
Q psy17636        178 STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPS  217 (222)
Q Consensus       178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~  217 (222)
                      ..+++||||||+.+  .+ ..|+..|+++..+||+|+|++|.+
T Consensus       395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~er~~  437 (666)
T 3o8b_A          395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIPT  437 (666)
T ss_dssp             SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGGSCS
T ss_pred             cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHh
Confidence            46899999999977  88 999999999999999999998753

>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*

Probab=98.31  E-value=1.1e-06  Score=80.84  Aligned_cols=99  Identities=10%  Similarity=-0.087  Sum_probs=73.0

Q ss_pred             CeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeE-EEEEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH
Q psy17636        114 RQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQ-VVINLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF  191 (222)
Q Consensus       114 ~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q-~~~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~  191 (222)
                      ....++|+|...+..++...|-  ...+.+.. +.....+.+ .++++...+|...+...+.... ...++||||+|+..
T Consensus       410 ~kL~GMTGTa~te~~Ef~~iY~--l~vv~IPt-nkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~  486 (822)
T 3jux_A          410 EKLAGMTGTAKTEESEFVQVYG--MEVVVIPT-HKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEK  486 (822)
T ss_dssp             SEEEEEESSCGGGHHHHHHHSC--CCEEECCC-SSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHH
T ss_pred             hHHeEECCCCchHHHHHHHHhC--CeEEEECC-CCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHH
Confidence            4688999999888888877773  33444433 333344444 4566777899999988887643 35699999999976


Q ss_pred             --HH-HHhHHCCceEEEecCCCCCChH
Q psy17636        192 --EL-VNLIAKNYWLIQAVGILMCPKS  215 (222)
Q Consensus       192 --~l-~~L~~~g~~~~~lHg~~~q~~R  215 (222)
                        .+ ..|...|+++..|||++.+++|
T Consensus       487 sE~Ls~~L~~~Gi~~~vLhgkq~~rE~  513 (822)
T 3jux_A          487 SELLSSMLKKKGIPHQVLNAKYHEKEA  513 (822)
T ss_dssp             HHHHHHHHHTTTCCCEEECSCHHHHHH
T ss_pred             HHHHHHHHHHCCCCEEEeeCCchHHHH
Confidence              78 9999999999999999544444

>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*

Probab=98.24  E-value=1.6e-07  Score=82.51  Aligned_cols=89  Identities=11%  Similarity=0.062  Sum_probs=52.9

Q ss_pred             CCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccH
Q psy17636        111 RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKC  190 (222)
Q Consensus       111 ~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~  190 (222)
                      +.++|+++||||++..+..++..  ..+              +......++...+.. ++..+.+.  .+++||||+++.
T Consensus       128 ~~~~~~l~~SAT~~~~~~~~~~~--~~~--------------~~~~~~~~~~~~~~~-~~~~l~~~--~~~~lVF~~s~~  188 (440)
T 1yks_A          128 ANESATILMTATPPGTSDEFPHS--NGE--------------IEDVQTDIPSEPWNT-GHDWILAD--KRPTAWFLPSIR  188 (440)
T ss_dssp             TTSCEEEEECSSCTTCCCSSCCC--SSC--------------EEEEECCCCSSCCSS-SCHHHHHC--CSCEEEECSCHH
T ss_pred             cCCceEEEEeCCCCchhhhhhhc--CCC--------------eeEeeeccChHHHHH-HHHHHHhc--CCCEEEEeCCHH
Confidence            46799999999998765433221  011              111111222222222 22334432  579999999997


Q ss_pred             H--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        191 F--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       191 ~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .  .+ ..|+..|+++..+||    ++|...+..|
T Consensus       189 ~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F  219 (440)
T 1yks_A          189 AANVMAASLRKAGKSVVVLNR----KTFEREYPTI  219 (440)
T ss_dssp             HHHHHHHHHHHTTCCEEECCS----SSCC------
T ss_pred             HHHHHHHHHHHcCCCEEEecc----hhHHHHHhhh
Confidence            6  88 999999999999999    4576666554

>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*

Probab=98.15  E-value=3e-07  Score=80.90  Aligned_cols=56  Identities=11%  Similarity=0.083  Sum_probs=43.3

Q ss_pred             CCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        161 PQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       161 ~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ....|...|.+++.. ...+++||||+++..  .+ ..|.     +..+||++++.+|...+..|
T Consensus       332 ~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F  390 (472)
T 2fwr_A          332 NSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGF  390 (472)
T ss_dssp             SCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHH
T ss_pred             cChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHH
Confidence            345677778776766 456799999999876  67 7763     66899999999999988654

>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A

Probab=98.09  E-value=5.2e-07  Score=79.55  Aligned_cols=89  Identities=17%  Similarity=0.200  Sum_probs=55.2

Q ss_pred             CCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccH
Q psy17636        111 RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKC  190 (222)
Q Consensus       111 ~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~  190 (222)
                      ++++|+++||||++..+..++..  ..|+.... .             .++.. +...++..+.+.  .+++||||+++.
T Consensus       141 ~~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~-~-------------~~~~~-~~~~~~~~l~~~--~~~~LVF~~s~~  201 (459)
T 2z83_A          141 LGEAAAIFMTATPPGTTDPFPDS--NAPIHDLQ-D-------------EIPDR-AWSSGYEWITEY--AGKTVWFVASVK  201 (459)
T ss_dssp             TTSCEEEEECSSCTTCCCSSCCC--SSCEEEEE-C-------------CCCSS-CCSSCCHHHHHC--CSCEEEECSCHH
T ss_pred             cCCccEEEEEcCCCcchhhhccC--CCCeEEec-c-------------cCCcc-hhHHHHHHHHhc--CCCEEEEeCChH
Confidence            36899999999999765433211  23333211 0             01111 111112334333  579999999997


Q ss_pred             H--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        191 F--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       191 ~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .  .+ ..|...|+++..+||+    +|...+..|
T Consensus       202 ~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f  232 (459)
T 2z83_A          202 MGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKC  232 (459)
T ss_dssp             HHHHHHHHHHHTTCCEEEESTT----CCCCCGGGS
T ss_pred             HHHHHHHHHHhcCCcEEecCHH----HHHHHHhhc
Confidence            6  88 9999999999999995    555555543

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A

Probab=97.99  E-value=9.3e-06  Score=70.95  Aligned_cols=88  Identities=17%  Similarity=0.151  Sum_probs=54.5

Q ss_pred             CCCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccH
Q psy17636        111 RPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKC  190 (222)
Q Consensus       111 ~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~  190 (222)
                      +.++|++++|||++..+.++...  ..|+ +.+.             ..++. .+...++..+.+.  .+++|||||++.
T Consensus       122 ~~~~~~l~~SAT~~~~~~~~~~~--~~~i-~~~~-------------~~~~~-~~~~~~~~~l~~~--~~~~lVF~~~~~  182 (431)
T 2v6i_A          122 MGDAGAIFMTATPPGTTEAFPPS--NSPI-IDEE-------------TRIPD-KAWNSGYEWITEF--DGRTVWFVHSIK  182 (431)
T ss_dssp             TTSCEEEEEESSCTTCCCSSCCC--SSCC-EEEE-------------CCCCS-SCCSSCCHHHHSC--SSCEEEECSSHH
T ss_pred             CCCCcEEEEeCCCCcchhhhcCC--CCce-eecc-------------ccCCH-HHHHHHHHHHHcC--CCCEEEEeCCHH
Confidence            56899999999998743322110  0111 1110             01111 1112223444442  579999999997


Q ss_pred             H--HH-HHhHHCCceEEEecCCCCCChHHHhhcC
Q psy17636        191 F--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSL  221 (222)
Q Consensus       191 ~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~  221 (222)
                      +  .+ ..|+..|+++..+||+    +|...+..
T Consensus       183 ~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~  212 (431)
T 2v6i_A          183 QGAEIGTCLQKAGKKVLYLNRK----TFESEYPK  212 (431)
T ss_dssp             HHHHHHHHHHHTTCCEEEESTT----THHHHTTH
T ss_pred             HHHHHHHHHHHcCCeEEEeCCc----cHHHHHHh
Confidence            6  88 9999999999999997    56666654

>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}

Probab=97.84  E-value=6.8e-06  Score=75.64  Aligned_cols=44  Identities=11%  Similarity=0.101  Sum_probs=36.6

Q ss_pred             CCeEEEEecccHH--HH-HHhHHC------CceEEEecCC--------CCCChHHHhhcCC
Q psy17636        179 TGSLLIFVTKKCF--EL-VNLIAK------NYWLIQAVGI--------LMCPKSPSRLSLV  222 (222)
Q Consensus       179 ~~~~IVF~nt~~~--~l-~~L~~~------g~~~~~lHg~--------~~q~~R~~~L~~~  222 (222)
                      .+++||||+++..  .+ ..|...      |+++..+||+        |++.+|...+..|
T Consensus       400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F  460 (699)
T 4gl2_A          400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKF  460 (699)
T ss_dssp             CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHH
T ss_pred             CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHH
Confidence            5799999999977  78 988887      9999999999        9999999988754

>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19

Probab=97.76  E-value=1.4e-05  Score=65.63  Aligned_cols=63  Identities=14%  Similarity=0.036  Sum_probs=52.0

Q ss_pred             cCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--HH-HHhHHC-CceEEEecCCCCCChHHHhhcCC
Q psy17636        160 LPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL-VNLIAK-NYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       160 ~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l-~~L~~~-g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      +....|...|.++|.+.. ...++||||+++..  .+ ..|... |+++..+||++++++|...+..|
T Consensus        92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F  159 (271)
T 1z5z_A           92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKF  159 (271)
T ss_dssp             STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHh
Confidence            345789999988877653 35799999998866  77 888875 99999999999999999988654

>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}

Probab=97.60  E-value=5e-05  Score=72.78  Aligned_cols=62  Identities=11%  Similarity=0.085  Sum_probs=52.0

Q ss_pred             cCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHH-CCceEEEecCCCCCChHHHhhcCC
Q psy17636        160 LPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIA-KNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       160 ~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~-~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      +....|...|..++.. ...+++||||+++..  .+ ..|.. .|+++..+||+|++.+|+..+..|
T Consensus       485 ~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F  550 (968)
T 3dmq_A          485 WNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWF  550 (968)
T ss_dssp             TTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHH
T ss_pred             cCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence            4456789989887766 456799999999976  78 88884 699999999999999999988765

>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A

Probab=97.56  E-value=5.8e-05  Score=69.58  Aligned_cols=106  Identities=10%  Similarity=-0.053  Sum_probs=67.6

Q ss_pred             HHHHHHHHhhCC-CCCeEEEEccccchHHHHHHHHhcCCCcEEEeCCCCCCCCCeeEEEEEcCCCchHHHHHHHHHhhCC
Q psy17636        100 EPQVRSICDHVR-PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGEANTDITQVVINLPQTQKLTWLTHNLVEFLS  178 (222)
Q Consensus       100 ~~~l~~Il~~~~-~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~  178 (222)
                      ...+..++..++ .+.|++++|||. +.++.++... .....+..... ...  +.  +  ...  .   + ..+...  
T Consensus       257 g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~-~~~~~v~~~~r-~~~--l~--~--~~~--~---l-~~l~~~--  319 (677)
T 3rc3_A          257 GWAWTRALLGLCAEEVHLCGEPAAI-DLVMELMYTT-GEEVEVRDYKR-LTP--IS--V--LDH--A---L-ESLDNL--  319 (677)
T ss_dssp             HHHHHHHHHHCCEEEEEEEECGGGH-HHHHHHHHHH-TCCEEEEECCC-SSC--EE--E--CSS--C---C-CSGGGC--
T ss_pred             hHHHHHHHHccCccceEEEeccchH-HHHHHHHHhc-CCceEEEEeee-cch--HH--H--HHH--H---H-HHHHhc--
Confidence            556777777777 678999999995 4456665544 33333321110 100  10  0  010  0   0 112222  


Q ss_pred             CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        179 TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       179 ~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ....||||+|+.+  .+ ..|...|+.+..+||+|++++|...+..|
T Consensus       320 ~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F  366 (677)
T 3rc3_A          320 RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKF  366 (677)
T ss_dssp             CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHH
Confidence            2456889999876  88 99999999999999999999999887654

>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}

Probab=97.49  E-value=0.00018  Score=65.04  Aligned_cols=50  Identities=12%  Similarity=-0.034  Sum_probs=36.0

Q ss_pred             HHHhhCCCCeEEEEecccHH--HH-HHhHHCCce--------EEEecCCCCCChHHHhhcCC
Q psy17636        172 NLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYW--------LIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       172 ~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~--------~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ++......+++||||+++..  .+ ..|...+..        +..+||++++ +|...+..|
T Consensus       432 ~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F  492 (590)
T 3h1t_A          432 FMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRF  492 (590)
T ss_dssp             HHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHH
T ss_pred             HHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHH
Confidence            34443345799999999966  77 888766543        7899999875 688777643

>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A

Probab=97.01  E-value=0.0004  Score=61.22  Aligned_cols=61  Identities=15%  Similarity=0.032  Sum_probs=49.6

Q ss_pred             CCchHHHHHHHHHhhC-CCCeEEEEecccHH--HH-HHhHHC-CceEEEecCCCCCChHHHhhcCC
Q psy17636        162 QTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL-VNLIAK-NYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       162 ~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l-~~L~~~-g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ...|...|.+++.+.. ...++||||+++..  .+ ..|... |+++..+||+|++.+|...+..|
T Consensus       323 ~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F  388 (500)
T 1z63_A          323 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKF  388 (500)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHh
Confidence            3568887877776653 45699999999866  67 888875 99999999999999999988654

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.94  E-value=0.0011  Score=52.56  Aligned_cols=34  Identities=18%  Similarity=0.188  Sum_probs=25.1

Q ss_pred             CHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC
Q psy17636         66 DEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII   99 (222)
Q Consensus        66 ~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi   99 (222)
                      ++.+.+.+...+...++++|.++++.+.+|++++
T Consensus        47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~   80 (235)
T 3llm_A           47 DHDLQAILQERELLPVKKFESEILEAISQNSVVI   80 (235)
T ss_dssp             CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEE
T ss_pred             CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEE
Confidence            4445454554455567899999999999999887

>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}

Probab=96.94  E-value=0.00073  Score=63.43  Aligned_cols=61  Identities=16%  Similarity=0.127  Sum_probs=51.1

Q ss_pred             CCchHHHHHHHHHhhCC-CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        162 QTQKLTWLTHNLVEFLS-TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       162 ~~~K~~~L~~~l~~~~~-~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ...|...|..+|..... ..++||||+....  .| ..|...|+++..+||++++.+|..++..|
T Consensus       554 ~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F  618 (800)
T 3mwy_W          554 SSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHF  618 (800)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTT
T ss_pred             cChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHh
Confidence            35678888777776543 3599999998766  77 99999999999999999999999998876

>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19

Probab=96.84  E-value=0.0008  Score=61.62  Aligned_cols=60  Identities=10%  Similarity=0.060  Sum_probs=47.0

Q ss_pred             CchHHHHHHHHHhh--CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        163 TQKLTWLTHNLVEF--LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       163 ~~K~~~L~~~l~~~--~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ..|...|..++...  ....++||||+++..  .+ ..|...|+++..+||+|++.+|...+..|
T Consensus       398 s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F  462 (644)
T 1z3i_X          398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERF  462 (644)
T ss_dssp             SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHh
Confidence            45666665444432  235799999998876  67 89999999999999999999999988654

>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23

Probab=94.49  E-value=0.041  Score=44.55  Aligned_cols=60  Identities=18%  Similarity=0.077  Sum_probs=36.3

Q ss_pred             HHHHHHHHHcCCEEecCCCCCCCCCcCCCCCC-HHHHHHHHHCCC------CCCCHHHHhHHHHHhCCCCCC
Q psy17636         35 QEAQELRAKSGITVSGADPPYPVSSFGHFGFD-EVLMKALRKCEY------TSPTPIQAQAVPAALSGRDII   99 (222)
Q Consensus        35 ~~~~~~~~~~~i~v~g~~~p~~~~~f~~l~l~-~~l~~~l~~~g~------~~pTpIQ~~~ip~il~g~dvi   99 (222)
                      +++..+.+++++.+...+.+.+...     ++ ..+-+.+...++      -+|+|.|.++++.++.+++.+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f~~~~~~~~~~~~~~~~~l~~~Q~~ai~~~l~~~~~l  132 (282)
T 1rif_A           66 GQIKKFCDNFGYKAWIDPQINEKEE-----LSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRI  132 (282)
T ss_dssp             GGHHHHHHHTTCCEEECGGGGCCCC-----CCHHHHHHHHHTCCCEETTEECCCCHHHHHHHHHHHHHSEEE
T ss_pred             HHHHHHHHhcCCeeEecCccCCCCC-----CCHHHHHhHHhHHHHhcCCCccCccHHHHHHHHHHHhcCCeE
Confidence            5677777888887765433211111     22 223233333344      489999999999998876555

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}

Probab=88.91  E-value=0.54  Score=32.18  Aligned_cols=43  Identities=7%  Similarity=-0.034  Sum_probs=32.0

Q ss_pred             HHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCC
Q psy17636        169 LTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILM  211 (222)
Q Consensus       169 L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~  211 (222)
                      |...+....+..+++|+|.+-..  .. ..|+..|+++..|.|++.
T Consensus        45 l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~   90 (108)
T 3gk5_A           45 LREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ   90 (108)
T ss_dssp             HHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred             HHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence            43444444445689999987544  66 999999999999999874

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}

Probab=87.37  E-value=0.71  Score=32.40  Aligned_cols=43  Identities=12%  Similarity=0.047  Sum_probs=30.7

Q ss_pred             HHHHHHhhCCC-CeEEEEe-cccHH--HH-HHhHHCCceEEEecCCCC
Q psy17636        169 LTHNLVEFLST-GSLLIFV-TKKCF--EL-VNLIAKNYWLIQAVGILM  211 (222)
Q Consensus       169 L~~~l~~~~~~-~~~IVF~-nt~~~--~l-~~L~~~g~~~~~lHg~~~  211 (222)
                      +...+....+. .++||+| ++-..  .. ..|+..|+++..|.|++.
T Consensus        78 ~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~  125 (134)
T 3g5j_A           78 IYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK  125 (134)
T ss_dssp             HHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred             HHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence            33334443345 6899999 45433  66 899999999999999875

>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*

Probab=87.28  E-value=0.3  Score=47.08  Aligned_cols=24  Identities=8%  Similarity=0.030  Sum_probs=18.0

Q ss_pred             HHHHHHHhhCCCCCeEEEEccccch
Q psy17636        101 PQVRSICDHVRPNRQTLLFSATFKK  125 (222)
Q Consensus       101 ~~l~~Il~~~~~~~Q~~lfSAT~~~  125 (222)
                      .....|...+| ++++++||||...
T Consensus       417 ~~~~~I~~~~p-~a~~lgfTATP~~  440 (1038)
T 2w00_A          417 EAQKNLKKKFK-RYYQFGFTGTPIF  440 (1038)
T ss_dssp             HHHHHHHHHCS-SEEEEEEESSCCC
T ss_pred             HHHHHHHHhCC-cccEEEEeCCccc
Confidence            44566777775 5899999999853

>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A

Probab=84.10  E-value=0.76  Score=31.34  Aligned_cols=35  Identities=11%  Similarity=-0.022  Sum_probs=27.7

Q ss_pred             CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCC
Q psy17636        177 LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILM  211 (222)
Q Consensus       177 ~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~  211 (222)
                      .+..+++|+|.+-..  .. ..|...|+++..|.|++.
T Consensus        54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~   91 (103)
T 3iwh_A           54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH   91 (103)
T ss_dssp             CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred             cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence            345689999986533  66 999999999999999863

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}

Probab=83.26  E-value=1.1  Score=30.03  Aligned_cols=34  Identities=9%  Similarity=0.012  Sum_probs=27.7

Q ss_pred             CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCC
Q psy17636        178 STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILM  211 (222)
Q Consensus       178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~  211 (222)
                      +..+++|+|.+-..  .. ..|+..|+++..|.|++.
T Consensus        55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~   91 (100)
T 3foj_A           55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD   91 (100)
T ss_dssp             TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred             CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence            45689999987544  66 899999999999999864

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A

Probab=81.66  E-value=4.5  Score=25.87  Aligned_cols=34  Identities=15%  Similarity=0.093  Sum_probs=25.6

Q ss_pred             CCCeEEEEecccHH--HH-HHhHHCCce-EEEecCCCCC
Q psy17636        178 STGSLLIFVTKKCF--EL-VNLIAKNYW-LIQAVGILMC  212 (222)
Q Consensus       178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~-~~~lHg~~~q  212 (222)
                      +..+++|+|++-..  .. ..|...|++ +..+ |++..
T Consensus        40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~~   77 (85)
T 2jtq_A           40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLKD   77 (85)
T ss_dssp             TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETTT
T ss_pred             CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHHH
Confidence            44689999987544  66 899999995 6666 88764

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=80.50  E-value=1.3  Score=29.15  Aligned_cols=33  Identities=24%  Similarity=0.233  Sum_probs=27.3

Q ss_pred             CeEEEEecccHH--HH-HHhHHCCceEEEecCCCCC
Q psy17636        180 GSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMC  212 (222)
Q Consensus       180 ~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q  212 (222)
                      .+++|+|.+-..  .. ..|+..|+++..|.|++..
T Consensus        54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~   89 (94)
T 1wv9_A           54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQA   89 (94)
T ss_dssp             SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGGC
T ss_pred             CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHHH
Confidence            789999987544  66 8899999998899999864

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A

Probab=80.15  E-value=1.9  Score=29.23  Aligned_cols=41  Identities=7%  Similarity=-0.020  Sum_probs=29.6

Q ss_pred             HHHHhhCCCCeEEEEecccHH--HH-HHhHHCCce-EEEecCCCC
Q psy17636        171 HNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYW-LIQAVGILM  211 (222)
Q Consensus       171 ~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~-~~~lHg~~~  211 (222)
                      ..+....+..+++|+|.+-..  .. ..|...|+. +..|.|++.
T Consensus        50 ~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~   94 (108)
T 1gmx_A           50 AFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE   94 (108)
T ss_dssp             HHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred             HHHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence            334443345689999987433  66 889999995 889999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	222
d1wrba1	238	c.37.1.19 (A:164-401) putative ATP-dependent RNA h	1e-13
d1wrba1	238	c.37.1.19 (A:164-401) putative ATP-dependent RNA h	1e-09
d2j0sa1	222	c.37.1.19 (A:22-243) Probable ATP-dependent RNA he	2e-12
d2j0sa1	222	c.37.1.19 (A:22-243) Probable ATP-dependent RNA he	5e-12
d1s2ma1	206	c.37.1.19 (A:46-251) Putative ATP-dependent RNA he	3e-12
d1s2ma1	206	c.37.1.19 (A:46-251) Putative ATP-dependent RNA he	7e-11
d2g9na1	218	c.37.1.19 (A:21-238) Initiation factor 4a {Human (	6e-12
d2g9na1	218	c.37.1.19 (A:21-238) Initiation factor 4a {Human (	2e-10
d1t6na_	207	c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5	1e-11
d1t6na_	207	c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5	1e-11
d1qdea_	212	c.37.1.19 (A:) Initiation factor 4a {Baker's yeast	1e-11
d1qdea_	212	c.37.1.19 (A:) Initiation factor 4a {Baker's yeast	2e-11
d1veca_	206	c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma	1e-11
d1veca_	206	c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma	2e-11
d1q0ua_	209	c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR	3e-11
d1q0ua_	209	c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR	8e-11
d1hv8a1	208	c.37.1.19 (A:3-210) Putative DEAD box RNA helicase	2e-09
d1hv8a1	208	c.37.1.19 (A:3-210) Putative DEAD box RNA helicase	4e-09
d2p6ra3	202	c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus	1e-06
d1oywa2	206	c.37.1.19 (A:1-206) RecQ helicase domain {Escheric	3e-05
d1gkub1	237	c.37.1.16 (B:1-250) Helicase-like "domain" of reve	6e-04
d1gkub1	237	c.37.1.16 (B:1-250) Helicase-like "domain" of reve	0.002

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase VlgB
species: Flatworm (Dugesia japonica) [TaxId: 6161]

 Score = 65.3 bits (158), Expect = 1e-13
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 46 ITVSGAD--PPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          ++V+G D      + +F     D  +   +    Y  PTPIQ  A+PA L  RDI+
Sbjct: 7  VSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIM 62

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase VlgB
species: Flatworm (Dugesia japonica) [TaxId: 6161]

 Score = 54.1 bits (129), Expect = 1e-09
 Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 100 EPQVRSICDHVR----PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQG 144
           EPQ+R I +        NRQTL+FSATF K I+KLA D L + I +  G
Sbjct: 190 EPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 238

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 2e-12
 Identities = 12/56 (21%), Positives = 26/56 (46%)

Query: 44 SGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          + +    ++      +F   G  E L++ +    +  P+ IQ +A+   + GRD+I
Sbjct: 3  TKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVI 58

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 5e-12
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
           + Q+  +  ++ P  Q +L SAT    I ++    +TDPI+I
Sbjct: 177 KEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRI 218

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.2 bits (147), Expect = 3e-12
 Identities = 14/42 (33%), Positives = 26/42 (61%)

Query: 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          ++F  F     L+  + +  +  P+PIQ +A+P A++GRDI+
Sbjct: 1  NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDIL 42

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.3 bits (137), Expect = 7e-11
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQGDIGE 148
           +  +  I   + P  Q+LLFSATF   +++     L  P +I   ++ E
Sbjct: 161 KTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEI---NLME 206

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 6e-12
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 51 ADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          ++    V SF      E L++ +    +  P+ IQ +A+   + G D+I
Sbjct: 5  SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVI 53

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
           + Q+  I   +  N Q +L SAT    + ++ +  + DPI+I
Sbjct: 173 KDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRI 214

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 1e-11
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 58  SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII---EPQVRSICDHVRPN 113
           S F  F     L++A+  C +  P+ +Q + +P A+ G D++   +  +      V   
Sbjct: 1   SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 59

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 1e-11
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
              V+ I       +Q ++FSAT  K I  + R  + DP++I
Sbjct: 164 RRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 205

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (143), Expect = 1e-11
 Identities = 10/42 (23%), Positives = 21/42 (50%)

Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
           + Q+  I   + P  Q +L SAT    + ++    + +P++I
Sbjct: 169 KEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRI 210

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (143), Expect = 2e-11
 Identities = 11/48 (22%), Positives = 21/48 (43%)

Query: 54  PYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIEP 101
              V  F     DE L++ +    +  P+ IQ +A+   + G D++  
Sbjct: 6   DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQ 53

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (142), Expect = 1e-11
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
              +  I   +  NRQ LL+SATF   ++K     L  P +I
Sbjct: 164 VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (142), Expect = 2e-11
 Identities = 14/42 (33%), Positives = 25/42 (59%)

Query: 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          + F  +     L+  + +  +  P+PIQ +++P ALSGRDI+
Sbjct: 3  NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDIL 44

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 58.5 bits (140), Expect = 3e-11
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDI 98
          + F  F F   +++A++   +  PT IQ + +P AL G  +
Sbjct: 1  TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESM 41

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 57.4 bits (137), Expect = 8e-11
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
              V  I   +  + Q L+FSAT  ++++   +  + +P  +
Sbjct: 165 ITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFV 206

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 53.1 bits (127), Expect = 2e-09
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKI 141
              V  I +    +++ LLFSAT  + I  LA+  + D   I
Sbjct: 163 IKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFI 204

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 52.4 bits (125), Expect = 4e-09
 Identities = 12/54 (22%), Positives = 22/54 (40%)

Query: 59  SFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIEPQVRSICDHVRP 112
           +F      + ++ A+R   +  PT IQ + +P  L+    I  Q R+       
Sbjct: 5   NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTAS 58

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 45.0 bits (105), Expect = 1e-06
 Identities = 8/36 (22%), Positives = 16/36 (44%)

Query: 64 GFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII 99
                +  L++       P QA+AV    SG++++
Sbjct: 9  SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLL 44

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 57 VSSFGHFGFDEVLMKALRKC-EYTSPTPIQAQAVPAALSGRDII 99
          ++       +    + L++   Y    P Q + +   LSGRD +
Sbjct: 1  MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCL 44

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.6 bits (86), Expect = 6e-04
 Identities = 10/60 (16%), Positives = 15/60 (25%), Gaps = 2/60 (3%)

Query: 42 AKSGITVSGADPPYPVSSFGHFGFDEVL--MKALRKCEYTSPTPIQAQAVPAALSGRDII 99
          A +    + A      +S   F  D +L       +     P  IQ       L      
Sbjct: 3  AAAAAAAAAAAAAAAAASLCLFPEDFLLKEFVEFFRKCVGEPRAIQKMWAKRILRKESFA 62

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 99  IEPQVRSICDHVRPNRQTLLFSATFKKRI-EKLARDVL 135
               +++           ++ +AT KK    +L R +L
Sbjct: 190 FHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLL 227

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	222
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	99.88
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	99.86
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	99.85
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	99.85
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	99.84
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	99.84
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	99.83
d1wrba1	238	putative ATP-dependent RNA helicase VlgB {Flatworm	99.81
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	99.78
d1s2ma2	171	Putative ATP-dependent RNA helicase DHH1 {Baker's	99.28
d1t5ia_	168	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	99.27
d2rb4a1	168	ATP-dependent RNA helicase DDX25 {Human (Homo sapi	99.24
d1hv8a2	155	Putative DEAD box RNA helicase {Archaeon Methanoco	99.23
d2j0sa2	168	Probable ATP-dependent RNA helicase DDX48 {Human (	99.19
d1fuka_	162	Initiation factor 4a {Baker's yeast (Saccharomyces	99.15
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	99.01
d1c4oa2	174	Nucleotide excision repair enzyme UvrB {Thermus th	98.81
d1oywa3	200	RecQ helicase domain {Escherichia coli [TaxId: 562	98.77
d1t5la2	181	Nucleotide excision repair enzyme UvrB {Bacillus c	98.65
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	98.53
d1jr6a_	138	HCV helicase domain {Human hepatitis C virus (HCV)	98.5
d1a1va2	299	HCV helicase domain {Human hepatitis C virus (HCV)	97.99
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	97.96
d1gkub2	248	Helicase-like "domain" of reverse gyrase {Archaeon	97.67
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	97.52
d1wp9a2	286	putative ATP-dependent RNA helicase PF2015 {Pyroco	97.37
d1z5za1	244	Helicase of the SNF2/Rad54 hamily {Sulfolobus solf	97.28
d2fwra1	200	DNA repair protein RAD25 {Archaeoglobus fulgidus [	96.76
d1z3ix1	346	Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI	96.74
d2p6ra4	201	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	96.66
d1yksa2	299	YFV helicase domain {Yellow fever virus [TaxId: 11	96.02
d1gm5a4	206	RecG helicase domain {Thermotoga maritima [TaxId:	95.32
d2eyqa5	211	Transcription-repair coupling factor, TRCF {Escher	95.18
d1tf5a4	175	Translocation ATPase SecA, nucleotide-binding doma	92.26
d1nkta4	219	Translocation ATPase SecA, nucleotide-binding doma	87.81
d1yt8a4	130	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	85.18
d1gmxa_	108	Sulfurtransferase GlpE {Escherichia coli [TaxId: 5	84.05
d1tq1a_	119	Thiosulfate sulfurtransferase/Senescence-associate	83.85

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=6.7e-23  Score=162.28  Aligned_cols=94  Identities=22%  Similarity=0.445  Sum_probs=89.8

Q ss_pred             cCCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------------
Q psy17636         50 GADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------------   99 (222)
Q Consensus        50 g~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------------   99 (222)
                      |.|.|.++.+|++|||++.++++|.++||++|||||++|||.+++|+|++                              
T Consensus         2 ~~~~~~~~~sF~~l~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~~~~~~~~   81 (212)
T d1qdea_           2 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQA   81 (212)
T ss_dssp             CBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCE
T ss_pred             CCCCcccccChhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeecccccchhhhhHhhhHhhhhccCCCcce
Confidence            56889999999999999999999999999999999999999999999999                              


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        82 lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDEad  161 (212)
T d1qdea_          82 LMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD  161 (212)
T ss_dssp             EEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred             EEEcccHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHhcCCcEEEECCCccccccccCceecCcceEEeehhhh
Confidence                                                                                            


Q ss_pred             -------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEe
Q psy17636        100 -------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQ  143 (222)
Q Consensus       100 -------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v  143 (222)
                             .+++..|++.+|+++|+++||||+|++++++++.++++|+.|.|
T Consensus       162 ~lld~~f~~~v~~I~~~~~~~~Q~vl~SAT~~~~v~~l~~~~l~~Pv~i~v  212 (212)
T d1qdea_         162 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV  212 (212)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC-
T ss_pred             hhcccchHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence                   88999999999999999999999999999999999999998864

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.8e-22  Score=157.95  Aligned_cols=94  Identities=26%  Similarity=0.477  Sum_probs=89.9

Q ss_pred             CCCCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC-------------------------------
Q psy17636         51 ADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII-------------------------------   99 (222)
Q Consensus        51 ~~~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi-------------------------------   99 (222)
                      .|.|+++.+|++|+|++.++++|.++||+.|||||++|||.++.|+|++                               
T Consensus         5 ~~~~e~i~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~~~~~~~al   84 (218)
T d2g9na1           5 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQAL   84 (218)
T ss_dssp             CCCCCCCCCGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEE
T ss_pred             CCCCCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhhheecccccCccEE
Confidence            4568899999999999999999999999999999999999999999999                               


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        85 il~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEa  164 (218)
T d2g9na1          85 VLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEA  164 (218)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESH
T ss_pred             EEcccchhhhhHHHHHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcCCcccccceEEEeeec
Confidence                                                                                            


Q ss_pred             --------HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeC
Q psy17636        100 --------EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQG  144 (222)
Q Consensus       100 --------~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~  144 (222)
                              .+++..|++.+|+++|+++||||+|++++++++.++++|+.|.|+
T Consensus       165 D~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~~~~v~~~~~~~l~~pv~i~v~  217 (218)
T d2g9na1         165 DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK  217 (218)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEEECC
T ss_pred             chhhcCchHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHCCCCEEEEEe
Confidence                    889999999999999999999999999999999999999999875

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.9e-22  Score=158.80  Aligned_cols=91  Identities=27%  Similarity=0.518  Sum_probs=86.5

Q ss_pred             CCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC----------------------------------
Q psy17636         54 PYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII----------------------------------   99 (222)
Q Consensus        54 p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi----------------------------------   99 (222)
                      .....+|++|||++.++++|+++||+.|||||++|||.+++|+|++                                  
T Consensus        13 ~~~~~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~~~~~~~~lil~   92 (222)
T d2j0sa1          13 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILA   92 (222)
T ss_dssp             CCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEEC
T ss_pred             CCCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhcccccccccccccCceeEEec
Confidence            4456799999999999999999999999999999999999999999                                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        93 PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll  172 (222)
T d2j0sa1          93 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEML  172 (222)
T ss_dssp             SSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHT
T ss_pred             chHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccccccccccceeeeecchhHhh
Confidence                                                                                            


Q ss_pred             ----HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeC
Q psy17636        100 ----EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQG  144 (222)
Q Consensus       100 ----~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~  144 (222)
                          .+++..|++.+|+++|+++||||+|++++++++.++++|+.|.++
T Consensus       173 ~~~f~~~i~~I~~~l~~~~Q~ilfSAT~~~~v~~l~~~~l~~Pv~I~V~  221 (222)
T d2j0sa1         173 NKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK  221 (222)
T ss_dssp             STTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC
T ss_pred             hcCcHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEEe
Confidence                889999999999999999999999999999999999999999875

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.6e-21  Score=153.57  Aligned_cols=85  Identities=33%  Similarity=0.562  Sum_probs=82.2

Q ss_pred             CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636         58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------------------------------------   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------------------------------------   99 (222)
                      .+|++|+|++.++++|.++||+.|||||++|||.+++|+|++                                      
T Consensus         3 ~~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~~~~~~~~lil~pt~e   82 (206)
T d1veca_           3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE   82 (206)
T ss_dssp             SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred             CChhccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhcccccccCcceEEEeecch
Confidence            589999999999999999999999999999999999999999                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        83 l~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~  162 (206)
T d1veca_          83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD  162 (206)
T ss_dssp             HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred             hhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccchhccccccceEEEeccccccccc
Confidence                                                                                            


Q ss_pred             -HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEE
Q psy17636        100 -EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIV  142 (222)
Q Consensus       100 -~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~  142 (222)
                       .+++..|++.+|+++|+++||||+|++++++++.+|++|+.|+
T Consensus       163 f~~~i~~I~~~~~~~~Q~~l~SAT~~~~v~~l~~~~l~~P~~I~  206 (206)
T d1veca_         163 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEIN  206 (206)
T ss_dssp             THHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEEC
T ss_pred             hHHHHHHHHHhCCCCCEEEEEEecCCHHHHHHHHHHCCCCEEEC
Confidence             8899999999999999999999999999999999999998873

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.9e-21  Score=152.97  Aligned_cols=86  Identities=31%  Similarity=0.581  Sum_probs=83.3

Q ss_pred             CcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC---------------------------------------
Q psy17636         59 SFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII---------------------------------------   99 (222)
Q Consensus        59 ~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi---------------------------------------   99 (222)
                      ||++|+|++.++++|+++||..|||||++|||.+++|+|++                                       
T Consensus         2 sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~~~~~~~~~~~~~~~~~   81 (206)
T d1s2ma1           2 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTREL   81 (206)
T ss_dssp             CGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred             ChHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhhhccccccccccccccccceeeccchhh
Confidence            79999999999999999999999999999999999999998                                       


Q ss_pred             -------------------------------------------------------------------------------H
Q psy17636        100 -------------------------------------------------------------------------------E  100 (222)
Q Consensus       100 -------------------------------------------------------------------------------~  100 (222)
                                                                                                     .
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l~~~~f~  161 (206)
T d1s2ma1          82 ALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFK  161 (206)
T ss_dssp             HHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHH
T ss_pred             hhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcccceEEEECCcccccccccceeecccceEEEeechhhhhhhhhH
Confidence                                                                                           7


Q ss_pred             HHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEeC
Q psy17636        101 PQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQG  144 (222)
Q Consensus       101 ~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~  144 (222)
                      +++..|++.+|+++|+++||||+|+++.++++.++++|+.|+++
T Consensus       162 ~~v~~I~~~l~~~~Q~il~SATl~~~v~~~~~~~l~~P~~I~~~  205 (206)
T d1s2ma1         162 TIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM  205 (206)
T ss_dssp             HHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCC
T ss_pred             HHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEee
Confidence            89999999999999999999999999999999999999999775

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3e-21  Score=152.06  Aligned_cols=86  Identities=29%  Similarity=0.601  Sum_probs=81.9

Q ss_pred             CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636         58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------------------------------------   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------------------------------------   99 (222)
                      .+|++|||++.++++|.++||++|||||++|||.+++|+|++                                      
T Consensus         1 s~F~dl~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~~~~~~~~lil~Ptre   80 (207)
T d1t6na_           1 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE   80 (207)
T ss_dssp             CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred             CCccccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeecccCCCceEEEEeccch
Confidence            369999999999999999999999999999999999999999                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        81 L~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~ll~~  160 (207)
T d1t6na_          81 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ  160 (207)
T ss_dssp             HHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSS
T ss_pred             hhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccCCceeccccceeehhhhhhhhhc
Confidence                                                                                            


Q ss_pred             ---HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEe
Q psy17636        100 ---EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQ  143 (222)
Q Consensus       100 ---~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v  143 (222)
                         .+++..|++.+|+++|+++||||+|++++++++.++++|+.|.|
T Consensus       161 ~~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l~~~~l~~P~~I~V  207 (207)
T d1t6na_         161 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV  207 (207)
T ss_dssp             HHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred             CCcHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEEeC
Confidence               67899999999999999999999999999999999999998864

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.83  E-value=9e-21  Score=149.11  Aligned_cols=86  Identities=24%  Similarity=0.515  Sum_probs=82.8

Q ss_pred             CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC--------------------------------------
Q psy17636         58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII--------------------------------------   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi--------------------------------------   99 (222)
                      ++|++|||++.++++|++.||++|||||++|||.+++|+|++                                      
T Consensus         1 t~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1q0ua_           1 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRE   80 (209)
T ss_dssp             CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred             CccccCCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEeecccccccceeeeeeeccccccccccccccccccccc
Confidence            369999999999999999999999999999999999999999                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDEad~ll  160 (209)
T d1q0ua_          81 LATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLML  160 (209)
T ss_dssp             HHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHH
T ss_pred             hhHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhhccccccceEEEEeeccccc
Confidence                                                                                            


Q ss_pred             ----HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEe
Q psy17636        100 ----EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQ  143 (222)
Q Consensus       100 ----~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v  143 (222)
                          .+++..|++.+|+++|+++||||+|++++++++.++++|+.|.|
T Consensus       161 ~~~f~~~v~~I~~~~~~~~Q~il~SATl~~~v~~l~~~~l~~p~~i~V  208 (209)
T d1q0ua_         161 DMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV  208 (209)
T ss_dssp             HTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred             ccccHHHHHHHHHHCCCCCEEEEEEccCCHHHHHHHHHHCCCCEEEEe
Confidence                78999999999999999999999999999999999999999876

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase VlgB
species: Flatworm (Dugesia japonica) [TaxId: 6161]

Probab=99.81  E-value=1.3e-20  Score=151.55  Aligned_cols=99  Identities=42%  Similarity=0.679  Sum_probs=89.0

Q ss_pred             CEEecCC--CCCCCCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC------------------------
Q psy17636         46 ITVSGAD--PPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII------------------------   99 (222)
Q Consensus        46 i~v~g~~--~p~~~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi------------------------   99 (222)
                      +.+.|.+  .|.++.+|++|||++.++++|.++||+.|||||.+|||.+++|+|++                        
T Consensus         7 ~~~~~~~~~~~~~~~~F~~l~l~~~l~~~L~~~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~   86 (238)
T d1wrba1           7 VSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQ   86 (238)
T ss_dssp             CCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             eeeeCCCCCCCCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhc
Confidence            4455544  46678999999999999999999999999999999999999999999                        


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        87 ~~~~~~~~~~~~~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~  166 (238)
T d1wrba1          87 DLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN  166 (238)
T ss_dssp             CC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT
T ss_pred             ccccccccCCCCceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccC
Confidence                                                                                            


Q ss_pred             -----------------------HHHHHHHHhhCC----CCCeEEEEccccchHHHHHHHHhcCCCcEEEeC
Q psy17636        100 -----------------------EPQVRSICDHVR----PNRQTLLFSATFKKRIEKLARDVLTDPIKIVQG  144 (222)
Q Consensus       100 -----------------------~~~l~~Il~~~~----~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v~  144 (222)
                                             .+++..|++.+.    .++|+++||||+|.+++++++.+|++|+.|.||
T Consensus       167 ~~~l~~v~~lViDEaD~ll~~~f~~~i~~Il~~~~~~~~~~~Q~il~SAT~~~~v~~l~~~~~~~p~~i~vg  238 (238)
T d1wrba1         167 KISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG  238 (238)
T ss_dssp             SBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred             ceeccccceeeeehhhhhhhhccHHHHHHHHHHhcCCCCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEEEeC
Confidence                                   688999998764    368999999999999999999999999999875

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.78  E-value=2.6e-19  Score=140.90  Aligned_cols=87  Identities=26%  Similarity=0.449  Sum_probs=82.8

Q ss_pred             CCCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCC-CCC------------------------------------
Q psy17636         57 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGR-DII------------------------------------   99 (222)
Q Consensus        57 ~~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~-dvi------------------------------------   99 (222)
                      .++|++|||++.|+++|.++||.+|||||.++||.+++|+ |++                                    
T Consensus         3 ~msf~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~~~~~~~lil~pt~   82 (208)
T d1hv8a1           3 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTR   82 (208)
T ss_dssp             CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCH
T ss_pred             ccCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeecccccccccccCcceEEEeecc
Confidence            5799999999999999999999999999999999999985 888                                    


Q ss_pred             --------------------------------------------------------------------------------
Q psy17636        100 --------------------------------------------------------------------------------   99 (222)
Q Consensus       100 --------------------------------------------------------------------------------   99 (222)
                                                                                                      
T Consensus        83 ~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad~l~~~~~  162 (208)
T d1hv8a1          83 ELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGF  162 (208)
T ss_dssp             HHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTT
T ss_pred             ccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhcCCCCEEEEChHHHHHHHHcCCCCcccCcEEEEEChHHhhcCCC
Confidence                                                                                            


Q ss_pred             HHHHHHHHhhCCCCCeEEEEccccchHHHHHHHHhcCCCcEEEe
Q psy17636        100 EPQVRSICDHVRPNRQTLLFSATFKKRIEKLARDVLTDPIKIVQ  143 (222)
Q Consensus       100 ~~~l~~Il~~~~~~~Q~~lfSAT~~~~v~~l~~~~l~~p~~i~v  143 (222)
                      .+++.+|++.+++++|+++||||+|+++.++++.+++||..|.+
T Consensus       163 ~~~i~~I~~~~~~~~Q~i~~SAT~~~~v~~~~~~~l~~~~~I~~  206 (208)
T d1hv8a1         163 IKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA  206 (208)
T ss_dssp             HHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEEC
T ss_pred             hHHHHHHHHhCCCCCeEEEEEccCCHHHHHHHHHHCCCCeEEEE
Confidence            78899999999999999999999999999999999999999875

>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=2.7e-12  Score=97.16  Aligned_cols=74  Identities=16%  Similarity=0.091  Sum_probs=65.6

Q ss_pred             CCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        148 EANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       148 ~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .+.++|+|+|+.|++.+|...|.++|.+ .+.+++||||||+..  .+ ..|...|+++..+||+|++++|..++..|
T Consensus         2 ~tl~~i~q~yi~v~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f   78 (171)
T d1s2ma2           2 LTLKGITQYYAFVEERQKLHCLNTLFSK-LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEF   78 (171)
T ss_dssp             CBCTTEEEEEEECCGGGHHHHHHHHHHH-SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCccceEEEEEEcCHHHHHHHHHHHHHh-CCCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhc
Confidence            3578899999999999999999887765 456799999999976  88 99999999999999999999999988654

>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.1e-12  Score=96.58  Aligned_cols=70  Identities=20%  Similarity=0.137  Sum_probs=62.8

Q ss_pred             CeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        152 DITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       152 ~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      +|+|+|+.+.+++|...|.++|... ..+++|||||++..  .+ ..|...|+++..+||+|++++|..++..|
T Consensus         1 ~l~q~~v~~~~~~K~~~L~~ll~~~-~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F   73 (168)
T d1t5ia_           1 GLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQF   73 (168)
T ss_dssp             CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CcEEEEEEeChHHHHHHHHHHHHhC-CCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhh
Confidence            4799999999999999998877654 56799999999977  88 99999999999999999999999998765

>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.23  E-value=4.6e-12  Score=94.27  Aligned_cols=71  Identities=20%  Similarity=0.129  Sum_probs=63.2

Q ss_pred             CCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        150 NTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       150 ~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      +.+|+|+|+.|++.+|...|.++|...  .+++||||||+..  .+ ..|...|+.+..+||++++.+|..++..|
T Consensus         1 n~nI~~~~i~v~~~~K~~~L~~ll~~~--~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f   74 (155)
T d1hv8a2           1 NANIEQSYVEVNENERFEALCRLLKNK--EFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLF   74 (155)
T ss_dssp             SSSSEEEEEECCGGGHHHHHHHHHCST--TCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHH
T ss_pred             CCCeEEEEEEeChHHHHHHHHHHHccC--CCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhh
Confidence            468999999999999999998877543  5699999999976  88 99999999999999999999999988764

>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.7e-11  Score=92.37  Aligned_cols=74  Identities=15%  Similarity=0.085  Sum_probs=64.5

Q ss_pred             CCCCCeeEEEEEcCC-CchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        148 EANTDITQVVINLPQ-TQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       148 ~~~~~i~q~~~~~~~-~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .+.++|+|+|+.|++ .+|...|..++... ...++|||||++..  .+ ..|...|+++..+||+|++++|..++..|
T Consensus         3 ~tl~~i~q~~v~v~~~~~K~~~L~~ll~~~-~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f   80 (168)
T d2j0sa2           3 LTLEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEF   80 (168)
T ss_dssp             CSCTTEEEEEEEESSTTHHHHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEEecChHHHHHHHHHHHHhC-CCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHH
Confidence            467899999999988 45999998877664 45799999999976  78 99999999999999999999999988654

>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.15  E-value=2.6e-11  Score=90.80  Aligned_cols=69  Identities=19%  Similarity=0.178  Sum_probs=59.9

Q ss_pred             eeEEEEEcCC-CchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        153 ITQVVINLPQ-TQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       153 i~q~~~~~~~-~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      |+|+|+.|++ +.|+..|..++.. .+..++||||||+..  .+ ..|...|+++..+||+|++++|...+..|
T Consensus         1 I~q~~~~v~~~e~K~~~L~~ll~~-~~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f   73 (162)
T d1fuka_           1 IKQFYVNVEEEEYKYECLTDLYDS-ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEF   73 (162)
T ss_dssp             CEEEEEEEESGGGHHHHHHHHHHH-TTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CEEEEEEeCCcHHHHHHHHHHHHh-CCCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHH
Confidence            6899999977 5599999876655 456799999999976  88 99999999999999999999999988754

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=3.2e-10  Score=87.53  Aligned_cols=42  Identities=21%  Similarity=0.337  Sum_probs=39.3

Q ss_pred             CCcCCCCCCHHHHHHHHHC-CCCCCCHHHHhHHHHHhCCCCCC
Q psy17636         58 SSFGHFGFDEVLMKALRKC-EYTSPTPIQAQAVPAALSGRDII   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~~-g~~~pTpIQ~~~ip~il~g~dvi   99 (222)
                      ..++.++|++.+.+.|++. ||+.++|.|.+||+.+++|+|++
T Consensus         2 ~~~e~~~l~~~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g~~vl   44 (206)
T d1oywa2           2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCL   44 (206)
T ss_dssp             CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEE
T ss_pred             CchhhCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEE
Confidence            3578899999999999998 99999999999999999999998

>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=98.81  E-value=2.6e-09  Score=80.33  Aligned_cols=62  Identities=16%  Similarity=0.045  Sum_probs=49.1

Q ss_pred             CCCchHHHHHHHHHhh-CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        161 PQTQKLTWLTHNLVEF-LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       161 ~~~~K~~~L~~~l~~~-~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      +.....+-|+..+.+. ....++||||+|+..  .+ ..|...|+++..+||+|++.+|+..|..|
T Consensus        12 p~~~qv~dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F   77 (174)
T d1c4oa2          12 PTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDL   77 (174)
T ss_dssp             CSTTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHH
Confidence            3333344455555544 345799999999976  88 99999999999999999999999999865

>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=4.5e-09  Score=81.01  Aligned_cols=70  Identities=13%  Similarity=0.037  Sum_probs=58.3

Q ss_pred             CCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        150 NTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       150 ~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .+||.  |.+++..+|...|+.+|... ...++||||+|+..  .+ ..|...|+.+..+||+|++++|..++..|
T Consensus         4 RpNi~--y~v~~~~~k~~~L~~~l~~~-~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f   76 (200)
T d1oywa3           4 RPNIR--YMLMEKFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKF   76 (200)
T ss_dssp             CTTEE--EEEEECSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCcE--EEEEcCCcHHHHHHHHHHhc-CCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHH
Confidence            35664  44567788999998877664 45799999999976  88 99999999999999999999999998764

>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=98.65  E-value=1.5e-08  Score=76.81  Aligned_cols=60  Identities=10%  Similarity=-0.040  Sum_probs=48.2

Q ss_pred             CchHHHHHHHHHhh-CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        163 TQKLTWLTHNLVEF-LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       163 ~~K~~~L~~~l~~~-~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ..+.+.|+..+.+. ....++||||+++..  .+ ..|...|+++..+||+|+|++|.++|..|
T Consensus        14 ~~qvd~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~F   77 (181)
T d1t5la2          14 KGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDL   77 (181)
T ss_dssp             TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHH
Confidence            34444455555544 245799999999976  88 99999999999999999999999999765

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.53  E-value=3.3e-08  Score=75.72  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=30.2

Q ss_pred             CCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC
Q psy17636         65 FDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII   99 (222)
Q Consensus        65 l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi   99 (222)
                      +++.+.+.|++.||.+|||.|.++|+.+++|+|++
T Consensus        10 ~~~~~~~~l~~~g~~~l~~~Q~~ai~~l~~~~~~i   44 (202)
T d2p6ra3          10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLL   44 (202)
T ss_dssp             HHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEE
T ss_pred             hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEE
Confidence            67889999999999999999999999999999988

>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=98.50  E-value=1.3e-08  Score=73.73  Aligned_cols=69  Identities=20%  Similarity=0.164  Sum_probs=49.2

Q ss_pred             CCCCCeeEEEEEcCCCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHH
Q psy17636        148 EANTDITQVVINLPQTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPS  217 (222)
Q Consensus       148 ~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~  217 (222)
                      ...++|++.++..+.+.+.... ....+....+++||||||+..  ++ ..|+..|+++..+||+|++++|.+
T Consensus         5 ~~~p~I~~~~~~~~~~~~~~~~-~i~l~~~~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~~~~~   76 (138)
T d1jr6a_           5 VPHPNIEEVALSTTGEIPFYGK-AIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPT   76 (138)
T ss_dssp             CCCTTEEEEECCBCSSEECSSC-EECHHHHTTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSCCCTT
T ss_pred             CcCCCeEEEEeccCChhHHHHh-hChHhhcCCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchhhhhhh
Confidence            4566788877655543222111 111122346799999999976  88 999999999999999999998854

>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=97.99  E-value=5.2e-07  Score=72.47  Aligned_cols=63  Identities=24%  Similarity=0.211  Sum_probs=45.5

Q ss_pred             CCCCeeEEEEEcCCCc----hHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHH
Q psy17636        149 ANTDITQVVINLPQTQ----KLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSP  216 (222)
Q Consensus       149 ~~~~i~q~~~~~~~~~----K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~  216 (222)
                      ..++|++..+..+.+.    |...| +.+    ..+++||||||+..  ++ ..|+..|+++..+||+|+++.|.
T Consensus         7 pHPnI~ev~l~~egEi~f~~k~I~l-e~~----kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~   76 (299)
T d1a1va2           7 PHPNIEEVALSTTGEIPFYGKAIPL-EVI----KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIP   76 (299)
T ss_dssp             CCTTEEEEECCSCSSEEETTEEECT-HHH----HSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSC
T ss_pred             CCCCeEEEecCCccchhhhhhhchh-hhh----cCCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHH
Confidence            3567887665544331    11111 111    25799999999976  88 99999999999999999999874

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.96  E-value=2.6e-06  Score=66.32  Aligned_cols=41  Identities=12%  Similarity=0.012  Sum_probs=31.6

Q ss_pred             CCcCCCCCCHHHHHHHHHCCCCCCCHHHHhHHHHHhCCCCCC
Q psy17636         58 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDII   99 (222)
Q Consensus        58 ~~f~~l~l~~~l~~~l~~~g~~~pTpIQ~~~ip~il~g~dvi   99 (222)
                      ..|.+.++.+.+.+ +.+.||.+|+|+|+.+||.+++|+|++
T Consensus        22 ~~~~~~~~~~~~~~-~~~~~~~~p~~~Q~~~i~~~l~g~~~~   62 (237)
T d1gkub1          22 CLFPEDFLLKEFVE-FFRKCVGEPRAIQKMWAKRILRKESFA   62 (237)
T ss_dssp             SCCTTHHHHHHHHH-HHHTTTCSCCHHHHHHHHHHHTTCCEE
T ss_pred             ccCccchhHHHHHH-HHHhccCCCCHHHHHHHHHHHCCCCEE
Confidence            34555445555544 556689999999999999999999988

>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.67  E-value=2.3e-06  Score=67.31  Aligned_cols=53  Identities=13%  Similarity=0.073  Sum_probs=42.8

Q ss_pred             CCchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        162 QTQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       162 ~~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      +++|...|..+|.. .+ +++||||+|+..  .+ .+|...      +||+|++++|...+..|
T Consensus        10 ~~~~~~~l~~~l~~-~~-~~~iif~~~~~~~~~l~~~l~~~------~hg~~~~~~R~~~~~~f   65 (248)
T d1gkub2          10 NDESISTLSSILEK-LG-TGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKGDYEKF   65 (248)
T ss_dssp             SCCCTTTTHHHHTT-SC-SCEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSSHHHHHH
T ss_pred             CchHHHHHHHHHHH-hC-CCEEEEECCHHHHHHHHHHHHHh------ccCCCCHHHHHHHHHHH
Confidence            57788888887764 33 589999999976  78 888753      89999999999988754

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=97.52  E-value=2.7e-05  Score=62.09  Aligned_cols=40  Identities=15%  Similarity=0.059  Sum_probs=35.3

Q ss_pred             CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHh
Q psy17636        179 TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSR  218 (222)
Q Consensus       179 ~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~  218 (222)
                      .+++||||+++.+  .+ ..|...|+++..+||++.++.|...
T Consensus       178 ~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~~~~  220 (305)
T d2bmfa2         178 KGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKT  220 (305)
T ss_dssp             CSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHGGGG
T ss_pred             CCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHHHhhh
Confidence            5799999999977  88 9999999999999999988777653

>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.37  E-value=0.00013  Score=57.95  Aligned_cols=60  Identities=15%  Similarity=0.119  Sum_probs=44.0

Q ss_pred             CchHHHHHHHHHhh---CCCCeEEEEecccHH--HH-HHhHHCCceEEEecC--------CCCCChHHHhhcCC
Q psy17636        163 TQKLTWLTHNLVEF---LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVG--------ILMCPKSPSRLSLV  222 (222)
Q Consensus       163 ~~K~~~L~~~l~~~---~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg--------~~~q~~R~~~L~~~  222 (222)
                      +.|...|.+.|.+.   ....++||||+++..  .+ ..|...|+++..+||        +|++.+|...+..|
T Consensus       142 ~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F  215 (286)
T d1wp9a2         142 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEF  215 (286)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHH
Confidence            45777766665432   456799999999976  78 999999999999977        57777888777654

>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Helicase of the SNF2/Rad54 hamily
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.28  E-value=5.3e-05  Score=59.02  Aligned_cols=61  Identities=15%  Similarity=0.014  Sum_probs=48.6

Q ss_pred             CCchHHHHHHHHHhhC-CCCeEEEEecccHH--HH-HHhHH-CCceEEEecCCCCCChHHHhhcCC
Q psy17636        162 QTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL-VNLIA-KNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       162 ~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l-~~L~~-~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .+.|...|.+++.+.. +..++||||+.+..  .+ ..|.. .|+++..+||++++.+|..++..|
T Consensus        67 ~S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F  132 (244)
T d1z5za1          67 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKF  132 (244)
T ss_dssp             TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhh
Confidence            3569999888887643 34699999998876  56 67754 489999999999999999988754

>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.76  E-value=0.00017  Score=54.29  Aligned_cols=54  Identities=11%  Similarity=0.080  Sum_probs=42.0

Q ss_pred             CchHHHHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        163 TQKLTWLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       163 ~~K~~~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ..|...|.+++.+. ...++||||++...  .| ..|     .+..+||++++.+|+..+..|
T Consensus        78 ~~K~~~l~~ll~~~-~~~k~lvf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~R~~~l~~F  134 (200)
T d2fwra1          78 KNKIRKLREILERH-RKDKIIIFTRHNELVYRISKVF-----LIPAITHRTSREEREEILEGF  134 (200)
T ss_dssp             SHHHHHHHHHHHHT-SSSCBCCBCSCHHHHHHHHHHT-----TCCBCCSSSCSHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCcEEEEeCcHHHHHHHHhhc-----CcceeeCCCCHHHHHHHHHHh
Confidence            46888888777654 45799999999866  66 655     345689999999999988765

>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=96.74  E-value=0.00059  Score=55.86  Aligned_cols=60  Identities=10%  Similarity=0.060  Sum_probs=48.7

Q ss_pred             CchHHHHHHHHHhh--CCCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHHhhcCC
Q psy17636        163 TQKLTWLTHNLVEF--LSTGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       163 ~~K~~~L~~~l~~~--~~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      +.|+..|..+|...  .+..++|||++.+..  .+ ..|...|+++..+||+++..+|...+..|
T Consensus       100 S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F  164 (346)
T d1z3ix1         100 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERF  164 (346)
T ss_dssp             SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhh
Confidence            56888776666543  235699999998876  67 99999999999999999999999887654

>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.66  E-value=0.00032  Score=53.01  Aligned_cols=20  Identities=5%  Similarity=-0.230  Sum_probs=16.6

Q ss_pred             EEEecCCCCCChHHHhhcCC
Q psy17636        203 LIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       203 ~~~lHg~~~q~~R~~~L~~~  222 (222)
                      ++.+||+|++++|.....+|
T Consensus        97 Ia~hh~~l~~~~r~~ie~~f  116 (201)
T d2p6ra4          97 AAFHHAGLLNGQRRVVEDAF  116 (201)
T ss_dssp             CCEECTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHH
Confidence            68899999999998776543

>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=96.02  E-value=0.0027  Score=50.75  Aligned_cols=39  Identities=8%  Similarity=-0.023  Sum_probs=31.9

Q ss_pred             CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHH
Q psy17636        179 TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPS  217 (222)
Q Consensus       179 ~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~  217 (222)
                      .++++|||++..+  .+ ..|+..|.++..|||.+..+++.+
T Consensus        36 ~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~~   77 (299)
T d1yksa2          36 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPT   77 (299)
T ss_dssp             CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC-----
T ss_pred             CCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHhh
Confidence            5799999999977  88 999999999999999999888765

>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.32  E-value=0.0026  Score=48.02  Aligned_cols=60  Identities=12%  Similarity=-0.004  Sum_probs=40.1

Q ss_pred             CchHHHHHHHHHhhCC-CCeEEEEecccHH----------HH-HHhHHC---CceEEEecCCCCCChHHHhhcCC
Q psy17636        163 TQKLTWLTHNLVEFLS-TGSLLIFVTKKCF----------EL-VNLIAK---NYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       163 ~~K~~~L~~~l~~~~~-~~~~IVF~nt~~~----------~l-~~L~~~---g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      .+|...+...+.+... .+++.|.|+...+          +. ..|.+.   ++++..+||+|++++|++++..|
T Consensus        12 ~~~~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F   86 (206)
T d1gm5a4          12 MDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEF   86 (206)
T ss_dssp             SSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHH
Confidence            3455656677776554 4688888875422          33 444332   77899999999999999998765

>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=95.18  E-value=0.0074  Score=45.49  Aligned_cols=54  Identities=9%  Similarity=0.067  Sum_probs=40.0

Q ss_pred             HHHHHH-hhCCCCeEEEEecccHH--HH-HHhHH--CCceEEEecCCCCCChHHHhhcCC
Q psy17636        169 LTHNLV-EFLSTGSLLIFVTKKCF--EL-VNLIA--KNYWLIQAVGILMCPKSPSRLSLV  222 (222)
Q Consensus       169 L~~~l~-~~~~~~~~IVF~nt~~~--~l-~~L~~--~g~~~~~lHg~~~q~~R~~~L~~~  222 (222)
                      +...+. +....+++.+.||...+  .+ ..+++  .++++..+||.|+.+++++.+..|
T Consensus        20 i~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F   79 (211)
T d2eyqa5          20 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDF   79 (211)
T ss_dssp             HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHH
Confidence            444444 34455799999997644  55 55554  478999999999999999998765

>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Translocation ATPase SecA, nucleotide-binding domains
species: Bacillus subtilis [TaxId: 1423]

Probab=92.26  E-value=0.031  Score=40.67  Aligned_cols=53  Identities=9%  Similarity=-0.103  Sum_probs=42.6

Q ss_pred             EEcCCCchHHHHHHHHHhhC-CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCC
Q psy17636        158 INLPQTQKLTWLTHNLVEFL-STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGIL  210 (222)
Q Consensus       158 ~~~~~~~K~~~L~~~l~~~~-~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~  210 (222)
                      ++....+|+..+...+.+.. ...|+||||.|...  .+ ..|+..|++...|+...
T Consensus        12 vf~T~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~   68 (175)
T d1tf5a4          12 IYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKN   68 (175)
T ss_dssp             EESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSC
T ss_pred             EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhh
Confidence            44556789998888776544 24699999999876  77 99999999999999874

>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Translocation ATPase SecA, nucleotide-binding domains
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.81  E-value=0.34  Score=36.00  Aligned_cols=59  Identities=12%  Similarity=-0.022  Sum_probs=46.4

Q ss_pred             EEEcCCCchHHHHHHHHHhhCC-CCeEEEEecccHH--HH-HHhHHCCceEEEecCCCCCChHHH
Q psy17636        157 VINLPQTQKLTWLTHNLVEFLS-TGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILMCPKSPS  217 (222)
Q Consensus       157 ~~~~~~~~K~~~L~~~l~~~~~-~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~q~~R~~  217 (222)
                      .++....+|+..++..+..... ..|+||.+.|...  .+ ..|...|++...|+..  +.+||.
T Consensus        11 ~Vy~T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK--~herEA   73 (219)
T d1nkta4          11 LIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK--YHEQEA   73 (219)
T ss_dssp             EEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS--CHHHHH
T ss_pred             eEEcCHHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchh--hHHHHH
Confidence            4556668899998887776653 3599999999866  77 9999999999999886  445554

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.18  E-value=0.51  Score=31.86  Aligned_cols=34  Identities=9%  Similarity=-0.033  Sum_probs=27.9

Q ss_pred             CCCeEEEEecccHH--HH-HHhHHCCceEEEecCCCC
Q psy17636        178 STGSLLIFVTKKCF--EL-VNLIAKNYWLIQAVGILM  211 (222)
Q Consensus       178 ~~~~~IVF~nt~~~--~l-~~L~~~g~~~~~lHg~~~  211 (222)
                      ...++++||++-..  .. ..|+..||++..|.|++.
T Consensus        79 ~~~~ivl~C~~G~rS~~aa~~L~~~G~~v~~l~GG~~  115 (130)
T d1yt8a4          79 RGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSE  115 (130)
T ss_dssp             BTCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCG
T ss_pred             ccceEEeecCCCccHHHHHHHHHHcCCCeEEEcCchH
Confidence            35689999986533  66 999999999999999975

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

Probab=84.05  E-value=0.51  Score=30.68  Aligned_cols=44  Identities=9%  Similarity=-0.003  Sum_probs=32.1

Q ss_pred             HHHHHHHhhCCCCeEEEEecccHH--HH-HHhHHCCc-eEEEecCCCC
Q psy17636        168 WLTHNLVEFLSTGSLLIFVTKKCF--EL-VNLIAKNY-WLIQAVGILM  211 (222)
Q Consensus       168 ~L~~~l~~~~~~~~~IVF~nt~~~--~l-~~L~~~g~-~~~~lHg~~~  211 (222)
                      .|...+.+..+..++||+|++-..  .. ..|...|+ ++..|.|++.
T Consensus        47 ~l~~~~~~~~~~~~ivv~c~~g~rs~~~a~~L~~~G~~~v~~l~GG~~   94 (108)
T d1gmxa_          47 TLGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE   94 (108)
T ss_dssp             HHHHHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred             hHHHHhhhccccCcccccCCCChHHHHHHHHHHHcCCCCEEEEcChHH
Confidence            344455555556789999986533  66 99999999 4888999874

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.85  E-value=0.32  Score=32.32  Aligned_cols=34  Identities=9%  Similarity=0.131  Sum_probs=27.1

Q ss_pred             CCCeEEEEecccHH--HH-HHhHHCCc-eEEEecCCCC
Q psy17636        178 STGSLLIFVTKKCF--EL-VNLIAKNY-WLIQAVGILM  211 (222)
Q Consensus       178 ~~~~~IVF~nt~~~--~l-~~L~~~g~-~~~~lHg~~~  211 (222)
                      +..++||+|++-.+  .. ..|...|+ ++..|.|++.
T Consensus        71 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~nv~~l~GG~~  108 (119)
T d1tq1a_          71 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS  108 (119)
T ss_dssp             TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred             CCcEEEEEcCCcCcHHHHHHHHHhcccCCeEEecChHH
Confidence            44689999987544  66 89999999 5889999974