Psyllid ID: psy1763

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
MPLDELLAMYGYNEHNNERSPSHGNPLAPPVSDPLMLDEEIEDDDEEEEEEEKQPVSQLAKLYEEGCSTSSKETALSKALEEDDDEYNFFDEHPDDDDDDPKKTIMVGSEYQAWIPEGMCKYGDILPYENDDKLLWDPNHNLVTVDLVETYLKKSHEMFINGAGDCLPMGSHSRDDEQALYLLLQCGYNTEEALRRASMQSVPNPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHDVFANKARLEKKKYSLHPGITDYMDRFLDEQEGSINPPASPNVYLMSESSKRQRNSSLGNKTTPPEETKTDKEGATSTPAAQQPANTSQSLPQTQTTPTSSAEEKT
ccHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccHHHHHcccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHccHHHHccccccccccEcccccHcccccccccccccccccccccccccccccHHHcccEEEccHHHcccccHcccccccccccccccEEEccccccccHHHHHHHHHHHHHccHHHHcccccHHHHcccHHHHHHHHHHccccHHHHHHHHccccccccHHHHHccHHHHHHHHHHHHHHcccHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccc
MPLDELLAMYgynehnnerspshgnplappvsdplmldeeiedddeeeeeeekqPVSQLAKLYEEGCSTSSKETALSKAleedddeynffdehpddddddpkktimVGSEYQAwipegmckygdilpyenddkllwdpnhnlvTVDLVETYLKKSHEMFINgagdclpmgshsrdDEQALYLLLQCGYNTEEALRRAsmqsvpnpdttsmwseEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHDVFANKARLEKkkyslhpgitDYMDRFldeqegsinppaspnvylmsesskrqrnsslgnkttppeetktdkegatstpaaqqpantsqslpqtqttptssaeekt
MPLDELLAMYGYNEHnnerspshgnpLAPPVSDPLMLDEEIEDDDEEEEEEEKQPVSQLAKLYEEGCSTSSKETALSKALEEDDDEYNFFdehpddddddpkKTIMVGSEYQAWIPEGMCKYGDILPYENDDKLLWDPNHNLVTVDLVETYLKKSHEMFINGAGDCLPMGSHSRDDEQALYLLLQCGYNTEEALRRASMqsvpnpdttsmwSEEECKNFESGLRMYGKNFYQIHqnkvktrnvGEIVQFYYLWKKTERHDVFANkarlekkkyslhpGITDYMDRFLDEQEGSINPPASPNVYLMSESSkrqrnsslgnkttppeetktdkegatstpaaqqpantsqslpqtqttptssaeekt
MPLDELLAMYGYNEHNNERSPSHGNPLAPPVSDPLMLdeeiedddeeeeeeeKQPVSQLAKLYEEGCSTSSKETALSKALeedddeynffdeHPddddddPKKTIMVGSEYQAWIPEGMCKYGDILPYENDDKLLWDPNHNLVTVDLVETYLKKSHEMFINGAGDCLPMGSHSRDDEQALYLLLQCGYNTEEALRRASMQSVPNPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHDVFANKARLEKKKYSLHPGITDYMDRFLDEQEGSINPPASPNVYLMSESSKRQRNSSLGNkttppeetktDKEGATSTPAAQQPANtsqslpqtqttptssAEEKT
********************************************************************************************************IMVGSEYQAWIPEGMCKYGDILPYENDDKLLWDPNHNLVTVDLVETYLKKSHEMFINGAGDCLPMG*****DEQALYLLLQCGYNTE************************CKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHDVFANKARLEKKKYSLHPGITDYMDRFL******************************************************************************
MPLDELLA************************************************************************************************IMVGSEYQAWIPEGMCKYGDILPYENDDKLLWDPNHNLVTVDLVETYLKKSHEMFIN****CLPMGSHSRDDEQALYLLLQCGYNTEEALRRASMQSVPNPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERH**********************************************************************************************************
MPLDELLAMYGYNEHN*********PLAPPVSDPLMLDEE*****************QLAKLYE**************ALEEDDDEYNFFDEHPDDDDDDPKKTIMVGSEYQAWIPEGMCKYGDILPYENDDKLLWDPNHNLVTVDLVETYLKKSHEMFINGAGDCLPMGSHSRDDEQALYLLLQCGYNTEEAL******************EEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHDVFANKARLEKKKYSLHPGITDYMDRFLDEQEGSINPPASPNVYLMS***********************************************************
MPLDELLAMYGYNE********************LMLD*****DDEEE**EEK**VSQLAKLYEEGCSTSSKETALSKALEEDD*EYNFFDEHPDDDDDDPKKTIMVGSEYQAWIPEGMCKYGDILPYENDDKLLWDPNHNLVTVDLVETYLKKSHEMFINGAGDCLPMGSHSRDDEQALYLLLQCGYNTEEALRRASMQSVPNPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHDVFANKARLEKKKYSLHPGITDYMDRFLDE****************************************************************************
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MPLDELLAMYGYNEHNNERSPSHGNPLAPPVSDPLMLDEEIEDDDEEEEEEEKQPVSQLAKLYEEGCSTSSKETALSKALEEDDDEYNFFDEHPDDDDDDPKKTIMVGSEYQAWIPEGMCKYGDILPYENDDKLLWDPNHNLVTVDLVETYLKKSHEMFINGAGDCLPMGSHSRDDEQALYLLLQCGYNTEEALRRASMQSVPNPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHDVFANKARLEKKKYSLHPGITDYMDRFLDEQEGSINPPASPNVYLMSESSKRQRNSSLGNKTTPPEETKTDKEGATSTPAAQQPANTSQSLPQTQTTPTSSAEEKT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query365 2.2.26 [Sep-21-2011]
Q7T105495 Mesoderm induction early N/A N/A 0.550 0.406 0.511 6e-56
Q5ZKT9513 Mesoderm induction early yes N/A 0.591 0.421 0.490 9e-56
Q8N108512 Mesoderm induction early yes N/A 0.602 0.429 0.484 2e-55
Q5REE1512 Mesoderm induction early yes N/A 0.550 0.392 0.507 2e-55
Q5UAK0511 Mesoderm induction early yes N/A 0.550 0.393 0.502 8e-55
Q4R3R9 550 Mesoderm induction early N/A N/A 0.791 0.525 0.393 2e-48
Q7Z3K6 550 Mesoderm induction early no N/A 0.791 0.525 0.393 3e-48
Q3UHF3 551 Mesoderm induction early no N/A 0.791 0.524 0.379 6e-46
Q8N344545 Mesoderm induction early no N/A 0.747 0.500 0.4 3e-43
A5PJX4 561 Mesoderm induction early no N/A 0.726 0.472 0.399 5e-41
>sp|Q7T105|MIER1_XENLA Mesoderm induction early response protein 1 OS=Xenopus laevis GN=mier1 PE=2 SV=1 Back     alignment and function desciption
 Score =  218 bits (555), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 108/211 (51%), Positives = 143/211 (67%), Gaps = 10/211 (4%)

Query: 99  DDPKKTIMVGSEYQAWIPEGMCKYGDI-LPYENDDKLLWDPNHNLVTVDLVETYLKKSHE 157
           +D KK IMVGS +QA IP G+CKY +    YENDD+LLWDP +  V  + V  +L ++  
Sbjct: 167 EDWKKEIMVGSMFQAEIPVGICKYRETEKVYENDDQLLWDPEY--VMEERVIDFLNEASR 224

Query: 158 MFINGAG-DCLPMGSHSRDDEQALYLLLQCGYNTEEALRRASMQSVPNPDTTSMWSEEEC 216
                 G D +P GSH +D+EQALY L++C ++TEEALRR         +  S+W+EEEC
Sbjct: 225 RTCEERGLDAIPEGSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAAREELSVWTEEEC 284

Query: 217 KNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHDVFANKARLEKKKYSLH 276
           +NFE GL+ YGK+F+ I  NKV+TR+VGE V FYY+WKK+ER+D FA + R  KKKY+LH
Sbjct: 285 RNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFAQQTRFGKKKYNLH 344

Query: 277 PGITDYMDRFLDEQEGSIN------PPASPN 301
           PG+TDYMDR LDE E + +      PP + N
Sbjct: 345 PGVTDYMDRLLDESESATSSRAPSPPPTTSN 375
Transcriptional repressor regulating the expression of a number of genes. Probably functions through recruitment of histone deacetylases involved in chromatin silencing.
Xenopus laevis (taxid: 8355)
>sp|Q5ZKT9|MIER1_CHICK Mesoderm induction early response protein 1 OS=Gallus gallus GN=MIER1 PE=2 SV=1 Back     alignment and function description
>sp|Q8N108|MIER1_HUMAN Mesoderm induction early response protein 1 OS=Homo sapiens GN=MIER1 PE=1 SV=2 Back     alignment and function description
>sp|Q5REE1|MIER1_PONAB Mesoderm induction early response protein 1 OS=Pongo abelii GN=MIER1 PE=2 SV=2 Back     alignment and function description
>sp|Q5UAK0|MIER1_MOUSE Mesoderm induction early response protein 1 OS=Mus musculus GN=Mier1 PE=1 SV=2 Back     alignment and function description
>sp|Q4R3R9|MIER3_MACFA Mesoderm induction early response protein 3 OS=Macaca fascicularis GN=MIER3 PE=2 SV=1 Back     alignment and function description
>sp|Q7Z3K6|MIER3_HUMAN Mesoderm induction early response protein 3 OS=Homo sapiens GN=MIER3 PE=1 SV=2 Back     alignment and function description
>sp|Q3UHF3|MIER3_MOUSE Mesoderm induction early response protein 3 OS=Mus musculus GN=Mier3 PE=1 SV=2 Back     alignment and function description
>sp|Q8N344|MIER2_HUMAN Mesoderm induction early response protein 2 OS=Homo sapiens GN=MIER2 PE=2 SV=2 Back     alignment and function description
>sp|A5PJX4|MIER2_BOVIN Mesoderm induction early response protein 2 OS=Bos taurus GN=MIER2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
242014780450 Mesoderm induction early response protei 0.934 0.757 0.487 5e-84
332029779 751 Mesoderm induction early response protei 0.805 0.391 0.519 5e-80
322789045 660 hypothetical protein SINV_12307 [Solenop 0.616 0.340 0.620 1e-79
156545408 663 PREDICTED: hypothetical protein LOC10012 0.673 0.371 0.573 3e-79
307168969 659 Mesoderm induction early response protei 0.616 0.341 0.611 1e-78
91095017373 PREDICTED: similar to mesoderm induction 0.827 0.809 0.503 5e-78
383864970 654 PREDICTED: uncharacterized protein LOC10 0.649 0.362 0.602 6e-78
340708890 601 PREDICTED: hypothetical protein LOC10064 0.613 0.372 0.622 6e-76
340708888 656 PREDICTED: hypothetical protein LOC10064 0.613 0.341 0.622 7e-76
328791834 624 PREDICTED: hypothetical protein LOC40907 0.613 0.358 0.618 9e-76
>gi|242014780|ref|XP_002428063.1| Mesoderm induction early response protein, putative [Pediculus humanus corporis] gi|212512582|gb|EEB15325.1| Mesoderm induction early response protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  317 bits (813), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 188/386 (48%), Positives = 243/386 (62%), Gaps = 45/386 (11%)

Query: 1   MPLDELLAMYGYNEHNNERSPSHGNPL----APPVSDPLMLDEEIEDDDEEEEEEEK--Q 54
           MPL ELLAMYGYNE++N RS    +           DPL  D+E     EE +E E   +
Sbjct: 60  MPLSELLAMYGYNENDNSRSGESVSSCDVQDKTEHIDPLKNDKENNAPPEENQEAEAVDE 119

Query: 55  PVSQLAKLYEE-----------GCSTSSKETALSKALEEDDDEYNFFDEHPDDDDDDPKK 103
             S+L KLY +           G     +  +  ++ EEDDD     D  PD+++   KK
Sbjct: 120 EPSELVKLYTDIPDTEIVDDTGGTGRLLRSVSRPQSEEEDDD----CDYSPDEEE--WKK 173

Query: 104 TIMVGSEYQAWIPEGMCKYGDILPYENDDKLLWDPNHNLVTVDLVETYLKKSHEMFINGA 163
           TIMVGS+YQA IP GMCKY D LPYENDDK+LWDP+   +T    E +L K+HE  +N +
Sbjct: 174 TIMVGSDYQARIPVGMCKYDDALPYENDDKMLWDPS--ALTEKQTEEFLAKAHESLLNNS 231

Query: 164 GDCLPMGSHSRDDEQALYLLLQCGYNTEEALRRASMQSVPNPDTTSMWSEEECKNFESGL 223
              + + +H +DDEQALYLLLQCGYN EEALRR  + ++P PDT S+WSEEEC+NFE G+
Sbjct: 232 Q--VNLETHVKDDEQALYLLLQCGYNVEEALRRRRLNAIPPPDTMSIWSEEECRNFEIGM 289

Query: 224 RMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHDVFANKARLEKKKYSLHPGITDYM 283
           R+YGK+F+ I +NKVKTR+VGE+VQFYYLWKKTERHDV+A K+RLEKKKYSLHPGITDYM
Sbjct: 290 RIYGKDFHAIQKNKVKTRSVGELVQFYYLWKKTERHDVYAYKSRLEKKKYSLHPGITDYM 349

Query: 284 DRFLDEQE-GSINP---PASPNVYLMSESSKRQRNSSLGNKTTPPEETKTDKEGATSTPA 339
           DRFL+EQE GS +     +SPN++L+  S  + +NS L              EG  ++P 
Sbjct: 350 DRFLEEQEVGSGHQDRRSSSPNLHLLLYSDSK-KNSRLD-------------EGERASPK 395

Query: 340 AQQPANTSQSLPQTQTTPTSSAEEKT 365
               +     +  +   P  + EEKT
Sbjct: 396 VDSLSYLGHFVNTSSELPIVTVEEKT 421

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332029779|gb|EGI69648.1| Mesoderm induction early response protein 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|322789045|gb|EFZ14503.1| hypothetical protein SINV_12307 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|156545408|ref|XP_001606488.1| PREDICTED: hypothetical protein LOC100122880 isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307168969|gb|EFN61855.1| Mesoderm induction early response protein 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|91095017|ref|XP_970158.1| PREDICTED: similar to mesoderm induction early response 1 [Tribolium castaneum] gi|270015433|gb|EFA11881.1| hypothetical protein TcasGA2_TC004295 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|383864970|ref|XP_003707950.1| PREDICTED: uncharacterized protein LOC100883382 [Megachile rotundata] Back     alignment and taxonomy information
>gi|340708890|ref|XP_003393050.1| PREDICTED: hypothetical protein LOC100646250 isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|340708888|ref|XP_003393049.1| PREDICTED: hypothetical protein LOC100646250 isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|328791834|ref|XP_392600.4| PREDICTED: hypothetical protein LOC409075 [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
UNIPROTKB|Q7T105495 mier1 "Mesoderm induction earl 0.575 0.424 0.504 6.9e-57
RGD|1562337512 Mier1 "mesoderm induction earl 0.591 0.421 0.488 6.9e-57
UNIPROTKB|Q08DY2510 MIER1 "Mesoderm induction earl 0.591 0.423 0.484 3.8e-56
UNIPROTKB|F1PLG6565 MIER1 "Uncharacterized protein 0.591 0.382 0.484 3.8e-56
UNIPROTKB|J9NW06458 MIER1 "Uncharacterized protein 0.591 0.471 0.484 3.8e-56
UNIPROTKB|F1NDG9510 MIER1 "Mesoderm induction earl 0.583 0.417 0.493 3.8e-56
UNIPROTKB|Q5ZKT9513 MIER1 "Mesoderm induction earl 0.583 0.415 0.493 3.8e-56
UNIPROTKB|Q8N108512 MIER1 "Mesoderm induction earl 0.575 0.410 0.5 1.3e-55
UNIPROTKB|Q5REE1512 MIER1 "Mesoderm induction earl 0.575 0.410 0.5 1.3e-55
MGI|MGI:1918398511 Mier1 "mesoderm induction earl 0.575 0.410 0.495 3.3e-55
UNIPROTKB|Q7T105 mier1 "Mesoderm induction early response protein 1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
 Score = 549 (198.3 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
 Identities = 109/216 (50%), Positives = 145/216 (67%)

Query:   102 KKTIMVGSEYQAWIPEGMCKYGDILP-YENDDKLLWDPNHNLVTVDLVETYLKKSHEMFI 160
             KK IMVGS +QA IP G+CKY +    YENDD+LLWDP +  V  + V  +L ++     
Sbjct:   170 KKEIMVGSMFQAEIPVGICKYRETEKVYENDDQLLWDPEY--VMEERVIDFLNEASRRTC 227

Query:   161 NGAG-DCLPMGSHSRDDEQALYLLLQCGYNTEEALRRASMQSVPNPDTTSMWSEEECKNF 219
                G D +P GSH +D+EQALY L++C ++TEEALRR         +  S+W+EEEC+NF
Sbjct:   228 EERGLDAIPEGSHIKDNEQALYELVKCNFDTEEALRRLRFNVKAAREELSVWTEEECRNF 287

Query:   220 ESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHDVFANKARLEKKKYSLHPGI 279
             E GL+ YGK+F+ I  NKV+TR+VGE V FYY+WKK+ER+D FA + R  KKKY+LHPG+
Sbjct:   288 EQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKSERYDFFAQQTRFGKKKYNLHPGV 347

Query:   280 TDYMDRFLDEQEG--SINPPASPNVYLMSESSKRQR 313
             TDYMDR LDE E   S   P+ P     S +S+ ++
Sbjct:   348 TDYMDRLLDESESATSSRAPSPPPTTSNSNTSQSEK 383
GO:0017053 "transcriptional repressor complex" evidence=ISS
GO:0031937 "positive regulation of chromatin silencing" evidence=ISS
RGD|1562337 Mier1 "mesoderm induction early response 1 homolog (Xenopus laevis)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q08DY2 MIER1 "Mesoderm induction early response 1 homolog (Xenopus laevis)" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PLG6 MIER1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NW06 MIER1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NDG9 MIER1 "Mesoderm induction early response protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKT9 MIER1 "Mesoderm induction early response protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N108 MIER1 "Mesoderm induction early response protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5REE1 MIER1 "Mesoderm induction early response protein 1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
MGI|MGI:1918398 Mier1 "mesoderm induction early response 1 homolog (Xenopus laevis" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5REE1MIER1_PONABNo assigned EC number0.50710.55060.3925yesN/A
Q5UAK0MIER1_MOUSENo assigned EC number0.50230.55060.3933yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
cd1166146 cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Doma 5e-23
pfam0144855 pfam01448, ELM2, ELM2 domain 3e-06
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 0.001
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 0.001
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 0.004
>gnl|CDD|212559 cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Domain of MTA3 and related proteins Back     alignment and domain information 
 Score = 90.0 bits (224), Expect = 5e-23
 Identities = 26/45 (57%), Positives = 35/45 (77%)

Query: 211 WSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKK 255
           WSE E K FE GLR YGK+F+ I Q+ +  ++VGE+V+FYY+WKK
Sbjct: 2   WSESEAKLFEEGLRKYGKDFHDIRQDFLPWKSVGELVEFYYMWKK 46

Members in this SANT/myb family include domains found in mouse metastasis-associated protein 3 (MTA3) proteins and arginine-glutamic dipeptide (RERE) repeats proteins. SANT (SWI3, ADA2, N-CoR and TFIIIB) DNA-binding domains are a diverse set of proteins that share a common 3 alpha-helix bundle. MTA3 has been shown to interact with nucleosome remodeling and deacetylase (NuRD) proteins CHD4 and HDAC1, and the core cohesin complex protein RAD21 in the ovary, and regulate G2/M progression in proliferating granulosa cells. RERE belongs to the atrophin family and has been identified as a nuclear receptor corepressor; altered expression levels of RERE are associated with cancer in humans while mutations of Rere in mice cause failure in closing the anterior neural tube and fusion of the telencephalic and optic vesicles during embryogenesis. Length = 46
>gnl|CDD|216509 pfam01448, ELM2, ELM2 domain Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 365
KOG4329|consensus445 100.0
KOG3554|consensus 693 100.0
KOG1194|consensus 534 99.95
KOG4167|consensus 907 99.94
PF0144855 ELM2: ELM2 domain; InterPro: IPR000949 The ELM2 (E 99.39
cd04709164 BAH_MTA BAH, or Bromo Adjacent Homology domain, as 99.13
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 98.41
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.31
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.07
KOG1878|consensus 1672 97.57
KOG2133|consensus 1229 97.4
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 96.98
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 95.87
KOG2133|consensus 1229 94.13
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 93.99
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 92.27
KOG4468|consensus 782 90.25
KOG1279|consensus506 90.22
PLN03212249 Transcription repressor MYB5; Provisional 88.17
KOG0457|consensus 438 87.86
PLN03091 459 hypothetical protein; Provisional 85.04
PF1455543 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 81.82
KOG0049|consensus 939 80.02
>KOG4329|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.5e-61  Score=471.23  Aligned_cols=279  Identities=39%  Similarity=0.588  Sum_probs=249.0

Q ss_pred             CChHHHHHhhcccCCCCCCCCCCCCCC--CCCCCCCCCCcccccCCchhhHHhhcCChhHHHHhhhcCCCCch----hhh
Q psy1763           1 MPLDELLAMYGYNEHNNERSPSHGNPL--APPVSDPLMLDEEIEDDDEEEEEEEKQPVSQLAKLYEEGCSTSS----KET   74 (365)
Q Consensus         1 mpl~ella~y~y~~~~~~~~~~~~~~~--~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~ls~~~e~~~~~~~----~~~   74 (365)
                      ||++||||||||++..++.+.+.+++.  .++.+++|++|+.++..+....|+|+++++.-....++|.++.+    -.|
T Consensus        64 mp~~ella~yg~~a~~~i~~e~~eegss~~ae~~~dm~~d~~s~~sg~~~~EeEeetq~sddd~spSV~s~dAq~~~~~r  143 (445)
T KOG4329|consen   64 MPIRELLALYGYTAASPIMEENVEEGSSAAAEPDDDMIFDSGSTMSGTSQLEEEEETQSSDDDASPSVDSEDAQKYEGIR  143 (445)
T ss_pred             CcHHHHHHHhccccCCcchhhccccccccccCCChhhcccccccccccccccccccccccccccCcccchhhhhhhcccc
Confidence            999999999999999998766555555  88999999999999999998888889999999999999998887    113


Q ss_pred             hhh------ccccccCcccCcccCCCCCCCCCCCCCcccCCCCcccCCCCCCCC-CCCCCCCCCCceeeecCCCCCChHH
Q psy1763          75 ALS------KALEEDDDEYNFFDEHPDDDDDDPKKTIMVGSEYQAWIPEGMCKY-GDILPYENDDKLLWDPNHNLVTVDL  147 (365)
Q Consensus        75 s~~------~~~~~~d~d~~~~~y~P~~~~~~~k~eIRVG~~YQA~IPe~l~~~-~d~~~~e~~d~LLW~P~~~~lse~~  147 (365)
                      +++      -+.+.+++|.   ++.|.   ++||++||||+.|||+||.+.+.+ ....+|+|.++|||+|..  +++++
T Consensus       144 ~~~rf~~~~~~e~~seede---~~~p~---d~wKk~ImVg~~fQAdip~~~~~~~e~~~~yenedqllwDps~--lpedE  215 (445)
T KOG4329|consen  144 KQHRFHLLDLYEDASEEDE---DAPPP---DDWKKEIMVGVLFQADIPLGNEATVEEEKRYENEDQLLWDPSN--LPEDE  215 (445)
T ss_pred             ccccccccccccccccccc---cCCCc---chhhhheeeccchhccccchhhhhhhhcccccccceeeecccc--CchHH
Confidence            333      3333444444   56776   899999999999999999999984 678899999999999998  89999


Q ss_pred             HHHHHHHHHh-hhhcCCCCCCCCCCCCCChHHHHHHHHHcCCCHHHHHHHHhhcCCCCCCCCCCCCHHHHHhHHHHHhhh
Q psy1763         148 VETYLKKSHE-MFINGAGDCLPMGSHSRDDEQALYLLLQCGYNTEEALRRASMQSVPNPDTTSMWSEEECKNFESGLRMY  226 (365)
Q Consensus       148 ld~YL~~Ars-~~~~~gl~~~p~~~~~rD~E~AL~~L~~~~yDv~~AL~~L~~~~~p~~~e~~~WTeeE~~~Fe~gl~~y  226 (365)
                      |..||.+|.. ++...+..|+|.|++++|+|+||+.|++||||+++||++|++++++.++.+..|+++||+.|++||..|
T Consensus       216 Vie~l~k~v~~~~~~~~~p~~P~gt~vkDnEqAL~~LvkcnfDteeAlrr~rfnvk~~rd~l~~wsEeEcr~FEegl~~y  295 (445)
T KOG4329|consen  216 VIEFLLKAVVRLRKEHDQPCPPEGTEVKDNEQALYELVKCNFDTEEALRRLRFNVKTVRDDLSGWSEEECRNFEEGLELY  295 (445)
T ss_pred             HHHHHHHHHHhhhcccCCCCCCccccccccHHHHHHHHHcCCcHHHHHHhcCCcceecccccccCCHHHHHHHHHHHHHh
Confidence            9999988875 455678889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHhhhhhccCccchhhHhhhhhccccccchhhHhhhhhcccccccCCCCcchhhhhHhhhhccCC
Q psy1763         227 GKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHDVFANKARLEKKKYSLHPGITDYMDRFLDEQEGSI  294 (365)
Q Consensus       227 GKdF~~I~k~~lptKsv~eiV~yYY~WKKt~ry~~~~~q~R~gKkk~~~~p~~td~~d~~~de~e~s~  294 (365)
                      |||||+||++.|++|+|++||.|||+|||+.||++|.||.       ..||..+.+||..++.....+
T Consensus       296 GKDF~lIr~nkvrtRsvgElVeyYYlWKkSeryd~~~qqt-------~~hp~~t~~~d~~l~~s~~~~  356 (445)
T KOG4329|consen  296 GKDFHLIRANKVRTRSVGELVEYYYLWKKSERYDVFAQQT-------DAHPQHTPVVDPHLDASWHQG  356 (445)
T ss_pred             cccHHHHHhcccccchHHHHHHHHHHhhcCcchhhHhhhc-------ccCCCCCcccccccccccccC
Confidence            9999999999999999999999999999999999999987       458999999999999888755

>KOG3554|consensus Back     alignment and domain information
>KOG1194|consensus Back     alignment and domain information
>KOG4167|consensus Back     alignment and domain information
>PF01448 ELM2: ELM2 domain; InterPro: IPR000949 The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function Back     alignment and domain information
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>KOG1878|consensus Back     alignment and domain information
>KOG2133|consensus Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>KOG2133|consensus Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information
>KOG4468|consensus Back     alignment and domain information
>KOG1279|consensus Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>KOG0457|consensus Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A Back     alignment and domain information
>KOG0049|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
2xaf_B 482 Crystal Structure Of Lsd1-Corest In Complex With Pa 3e-09
2yqk_A63 Solution Structure Of The Sant Domain In Arginine-G 4e-09
2crg_A70 Solution Structure Of The Myb-Like Dna-Binding Doma 2e-05
>pdb|2XAF|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine Length = 482 Back     alignment and structure 
Iteration: 1

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 105 IMVGSEYQAWIPEGMCKYGDILPYENDD--KLLWDPNHNLVTVDLVETYLKKSHEMFING 162
           + VG +YQA +P+           E D+   L+W PN NL    L E Y+  + E     
Sbjct: 102 MRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWSPNQNLSEAKLDE-YIAIAKE----- 155
Query: 163 AGDCLPMGSHSRDDEQALYLLLQCGYNTEEALRRASMQS-VPNPDTTSMWSEEECKNFES 221
                    H  + EQAL +L    +N E++L  A + +  P PD    W+ E+   FE 
Sbjct: 156 --------KHGYNMEQALGMLFWHKHNIEKSL--ADLPNFTPFPDE---WTVEDKVLFEQ 202
Query: 222 GLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTE-RHDVFANKARLEKK 271
               +GK F++I Q  +  +++  +V+FYY WKKT  +  V    AR +K+
Sbjct: 203 AFSFHGKTFHRIQQ-MLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKR 252
>pdb|2YQK|A Chain A, Solution Structure Of The Sant Domain In Arginine-Glutamic Acid Dipeptide (Re) Repeats Length = 63 Back     alignment and structure
>pdb|2CRG|A Chain A, Solution Structure Of The Myb-Like Dna-Binding Domain Of Mouse Mta3 Protein Length = 70 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
2xag_B 482 REST corepressor 1; amine oxidase, chromatin regul 9e-25
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 9e-06
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 9e-21
2crg_A70 Metastasis associated protein MTA3; transcription 1e-19
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 1e-16
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 3e-16
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 2e-12
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 1e-05
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 1e-05
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Length = 482 Back     alignment and structure
 Score =  104 bits (258), Expect = 9e-25
 Identities = 48/335 (14%), Positives = 107/335 (31%), Gaps = 28/335 (8%)

Query: 20  SPSHGNPLAPPVSDPLMLDEEIEDDDEEEEEEEKQPVSQLAKLYEEGCSTSSKETALSKA 79
           + +     +   + P                      +      +   + +    + S +
Sbjct: 24  AAAASAAASAACASPAATAASGAAASSASAAAASAAAAPNNGQNKSLAAAAPNGNSSSNS 83

Query: 80  LEEDDDEYNFFDEHPDDDDDDPKKTIMVGSEYQAWIPE--GMCKYGDILPYENDDKLLWD 137
            EE              D++     + VG +YQA +P+             +N   L+W 
Sbjct: 84  WEEGSSG-------SSSDEEHGGGGMRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWS 136

Query: 138 PNHNLVTVDLVETYLKKSHEMFINGAGDCLPMGSHSRDDEQALYLLLQCGYNTEEALRRA 197
           PN NL     ++ Y+              +    H  + EQAL +L    +N E++L   
Sbjct: 137 PNQNLSEAK-LDEYIA-------------IAKEKHGYNMEQALGMLFWHKHNIEKSLADL 182

Query: 198 SMQSVPNPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTE 257
              +    +    W+ E+   FE     +GK F++I Q  +  +++  +V+FYY WKKT 
Sbjct: 183 PNFTPFPDE----WTVEDKVLFEQAFSFHGKTFHRI-QQMLPDKSIASLVKFYYSWKKTR 237

Query: 258 RHDVFANKARLEKKKYSLHPGITDYMDRFLDEQEGSINPPASPNVYLMSESSKRQRNSSL 317
                 ++   ++K+               +  +  ++        +    +  Q     
Sbjct: 238 TKTSVMDRHARKQKREREESEDELEEANGNNPIDIEVDQNKESKKEVPPTETVPQVKKEK 297

Query: 318 GNKTTPPEETKTDKEGATSTPAAQQPANTSQSLPQ 352
            +        +   +G   +    +  + + +   
Sbjct: 298 HSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAAT 332
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Length = 482 Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63 Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Length = 70 Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
2xag_B 482 REST corepressor 1; amine oxidase, chromatin regul 100.0
2crg_A70 Metastasis associated protein MTA3; transcription 99.79
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 99.74
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 99.66
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 99.6
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 99.14
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 98.58
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 97.78
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 97.78
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 96.91
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 97.68
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 97.58
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 97.4
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 97.35
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 97.31
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 97.29
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 97.13
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 97.01
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 97.0
2cjj_A93 Radialis; plant development, DNA-binding protein, 96.93
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 96.83
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 96.68
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 96.6
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 96.54
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 96.44
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 96.24
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 96.17
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 96.09
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 96.01
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 95.79
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 95.61
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 95.49
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 95.47
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 95.46
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 95.38
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 95.34
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 95.28
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 95.19
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 94.83
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 94.77
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 93.95
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 92.63
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 91.73
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 89.95
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 89.78
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 89.54
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 84.34
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 82.54
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
Probab=100.00  E-value=1.2e-36  Score=309.37  Aligned_cols=156  Identities=28%  Similarity=0.456  Sum_probs=0.0

Q ss_pred             CCCCCCcccCCCCcccCCCCCCCC--CCCCCCCCCCceeeecCCCCCChHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCh
Q psy1763          99 DDPKKTIMVGSEYQAWIPEGMCKY--GDILPYENDDKLLWDPNHNLVTVDLVETYLKKSHEMFINGAGDCLPMGSHSRDD  176 (365)
Q Consensus        99 ~~~k~eIRVG~~YQA~IPe~l~~~--~d~~~~e~~d~LLW~P~~~~lse~~ld~YL~~Ars~~~~~gl~~~p~~~~~rD~  176 (365)
                      +.++++||||++|||+||+++...  .+....+++++|||.|... |++.+|++||..|+++.             ..|+
T Consensus        96 ~~~~~eIRVG~~YQAeIPe~~~~~~~~~~~~~~~~e~LvW~P~~~-l~d~~ldeYL~~Ars~~-------------g~n~  161 (482)
T 2xag_B           96 EHGGGGMRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWSPNQN-LSEAKLDEYIAIAKEKH-------------GYNM  161 (482)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCCCCCCCccCccCCCccCCCccccccccCccceeEecCCCC-CCHHHHHHHHHHHHHhc-------------CccH
Confidence            577899999999999999987432  1223346789999999964 89999999999998752             1357


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHhhcCCCCCCCCCCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhccccc
Q psy1763         177 EQALYLLLQCGYNTEEALRRASMQSVPNPDTTSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKT  256 (365)
Q Consensus       177 E~AL~~L~~~~yDv~~AL~~L~~~~~p~~~e~~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~WKKt  256 (365)
                      |+||++||+|+||+++||..|... .+   ....||++|+++|+++|.+|||+|+.|++ +||+|++++||+|||+|||+
T Consensus       162 EqAL~~L~~~~yDi~~AL~~L~~~-~p---~~d~WT~eE~~lFe~al~~yGKdF~~I~~-~lp~Ksv~e~V~yYY~WKKt  236 (482)
T 2xag_B          162 EQALGMLFWHKHNIEKSLADLPNF-TP---FPDEWTVEDKVLFEQAFSFHGKTFHRIQQ-MLPDKSIASLVKFYYSWKKT  236 (482)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHccCCHHHHHHHHhcc-cc---cccccCHHHHHHHHHHHHHcCccHHHHHH-HcCCCCHHHHHHHhcccccc
Confidence            899999999999999999998632 33   24689999999999999999999999998 89999999999999999999


Q ss_pred             cch-hhHhhhhhcccccc
Q psy1763         257 ERH-DVFANKARLEKKKY  273 (365)
Q Consensus       257 ~ry-~~~~~q~R~gKkk~  273 (365)
                      .+| .+|.++.|++||++
T Consensus       237 ~~yk~l~~~~~rr~krk~  254 (482)
T 2xag_B          237 RTKTSVMDRHARKQKRER  254 (482)
T ss_dssp             ------------------
T ss_pred             ccHHHHHHHHHhhcCCCc
Confidence            998 67777766666554
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 365
d2crga157 a.4.1.3 (A:8-64) Metastasis associated protein MTA 1e-19
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 2e-10
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 5e-07
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.1 bits (195), Expect = 1e-19
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query: 211 WSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERH 259
           WS  E   FE  L  YGK+F  I Q+ +  +++  I+++YY+WK T+R+
Sbjct: 4   WSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRY 52
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 99.76
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 99.31
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 99.11
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 98.49
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 97.97
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.63
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 97.51
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.47
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.12
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.07
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 96.72
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 96.71
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 96.21
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 96.2
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 94.03
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 91.99
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 89.88
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 84.82
d1wj7a191 Ubiquitin-associated protein 2-like Ubap2l {Mouse 83.3
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.3e-19  Score=133.71  Aligned_cols=55  Identities=35%  Similarity=0.679  Sum_probs=50.9

Q ss_pred             CCCCCHHHHHhHHHHHhhhCCChHhhhhhccCccchhhHhhhhhccccccchhhH
Q psy1763         208 TSMWSEEECKNFESGLRMYGKNFYQIHQNKVKTRNVGEIVQFYYLWKKTERHDVF  262 (365)
Q Consensus       208 ~~~WTeeE~~~Fe~gl~~yGKdF~~I~k~~lptKsv~eiV~yYY~WKKt~ry~~~  262 (365)
                      ++.||++|+.+|++||.+|||||+.|++++||+||+++||+|||.|||+.+|..|
T Consensus         1 ~d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~~Kkt~~y~~~   55 (57)
T d2crga1           1 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRYVQQ   55 (57)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHHTCCSSCSC
T ss_pred             CCCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHHHhCCchHhhc
Confidence            4689999999999999999999999998678999999999999999999998443
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure